Psyllid ID: psy12625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610--
Protein Sequence
MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS
Secondary Structure (PSIPRED)
ccccHHHHHccccccccccEEEEEEEEEEEEEEEcccccccccccccccEEEEEccEEEEEEccccccHHHHHHHHHccccccccccEEEEEEEccEEcccHHHHHccEEEEcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHEEccccEEEEcccccHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcccccEEEEEccEEEEEccHHHcccccccEEEEccccccEcccEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEccccccccccHHHEEEEEEccccccccEEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHEEccccccccHEEEEHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHcccccccccccHHHHHHHccccccHcccccHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHcHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEcccccccHHEHHHEEHcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MKSEEAELqdlkksprkhFNLLFQDISysalyydthsysikskDILKDISGVFVSKELSvilgpsgsgktKLLDILagyrrpkktetnsgyieINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELlsnpsiifldepttgldylnATNLVKLLRDMAHQGTMIICTlhqpsaslLNMADYLYVLTEgyctyqgtvpglvpylsdfgyqcpsnynpadyVIEVSLEadrmfepctngkffnansshnTKTVLKTIEEKGLSSKEFYSVLsteipypadCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDvkngvifgpltllpwtifsgyfvlqrdspdcfKFLFKLSFLKHSLEGILLSVygydrdqlkcyeeychfkspakfldaldmkngdysYDLFFLIVSYILVKIASYLVLYFQINRNKS
Flexible Loop (DISEMBL)
mkseeaelqdlkksprkhfNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELsvilgpsgsgktklLDILAgyrrpkktetnsgyieinetrlqdhrMLRKESCYIMQDNLLQELLTVEESLTVAAHLklgnqysrkakeskvdsiadslsistckntltkhlsggqKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTngkffnansshntKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS
Low Complexity Region (SEG)
MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNlsllffstmflmftALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCfkflfklsflkhslEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS
Disordered region (IsUnstruct)
*****************HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR******NSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ******************ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI*****
Disordered Region (DISOPRED)
******************FNLLFQDISYSALYYD****SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN*****AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADR**EPC*NGKFFNA***********************************DCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINR***
Disordered Region (DISEMBL)
************KSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY************ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS
Disordered Region (DISPRO)
**********LKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEK********SVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQIN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	612	2.2.26 [Sep-21-2011]
Q9H172	646	ATP-binding cassette sub-	yes	N/A	0.965	0.914	0.383	1e-122
Q64343	666	ATP-binding cassette sub-	no	N/A	0.957	0.879	0.397	1e-120
P45844	678	ATP-binding cassette sub-	no	N/A	0.965	0.871	0.397	1e-120
Q17320	679	Protein white OS=Ceratiti	N/A	N/A	0.911	0.821	0.269	7e-59
P10090	687	Protein white OS=Drosophi	no	N/A	0.936	0.834	0.26	8e-59
Q9ZU35	725	ABC transporter G family	yes	N/A	0.862	0.728	0.276	2e-58
Q27256	695	Protein white OS=Anophele	no	N/A	0.924	0.814	0.273	9e-58
Q7XA72	672	ABC transporter G family	no	N/A	0.923	0.840	0.285	5e-57
Q05360	677	Protein white OS=Lucilia	N/A	N/A	0.911	0.824	0.266	6e-56
Q9C6W5	648	ABC transporter G family	no	N/A	0.919	0.868	0.273	7e-53

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/615 (38%), Positives = 358/615 (58%), Gaps = 24/615 (3%)

Query: 7   ELQDLKKSP-RKHFNLLFQDISYSALY---YDTHSYSIKSKDILKDISGVFVSKELSVIL 62
           E Q     P R   ++ F ++SYS      +    Y    K +LK +SG F  +EL  I+
Sbjct: 46  EAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGY----KTLLKCLSGKFCRRELIGIM 101

Query: 63  GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
           GPSG+GK+  ++ILAGYR         G I +N  R ++ R  RK SCYIMQD++L   L
Sbjct: 102 GPSGAGKSTFMNILAGYRE----SGMKGQILVN-GRPRELRTFRKMSCYIMQDDMLLPHL 156

Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
           TV E++ V+A+LKL  +  ++ K+  V  I  +L + +C +T T  LSGGQ+KRL+IALE
Sbjct: 157 TVLEAMMVSANLKLSEK--QEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALE 214

Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
           L++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L  M D LY+L
Sbjct: 215 LVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYIL 274

Query: 243 TEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEA-----DRMFEPCTNGKFF 297
           ++G C ++G V  L+PYL   G  CP+ +NPAD++IEV+          +F    NG   
Sbjct: 275 SQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCA 334

Query: 298 NANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFL 357
            A    + +   K                     +    L+QFCIL KRT +   RD  L
Sbjct: 335 MAEKKSSPE---KNEVPAPCPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVL 391

Query: 358 TKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFE 417
           T +R   H++IG  +G++Y  IGDDA++V NN   LFFS +FLMF AL   ++T+PLE  
Sbjct: 392 THLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMA 451

Query: 418 ITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICV 477
           +  REH N W+SLKAYYLA  +AD+P Q++C V+YC  VY+++ QP E  RF +F  +  
Sbjct: 452 VFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALAT 511

Query: 478 FLTLYSQGMGVLVGMILD-VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFL 536
              L +Q +G+L+G   + ++     GP+T +P  +FSG+FV  +  P   ++   LS++
Sbjct: 512 ATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYV 571

Query: 537 KHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVK 596
           ++  EG++L++YG +R  L C EE C F+ P   L ALD+++     D   L + ++ ++
Sbjct: 572 RYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALR 631

Query: 597 IASYLVLYFQINRNK 611
           + +YLVL +++   +
Sbjct: 632 LLAYLVLRYRVKSER 646

May be involved in macrophage lipid homeostasis.
Homo sapiens (taxid: 9606)

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/624 (39%), Positives = 368/624 (58%), Gaps = 38/624 (6%)

Query: 7   ELQDLKKSPRKH-FNLLFQDISYS---ALYYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
           E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct: 62  EAQRFSSLPRRAAVNIEFKDLSYSVPEGPWWKKKGY----KTLLKGISGKFNSGELVAIM 117

Query: 63  GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct: 118 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGMP-RDLRCFRKVSCYIMQDDMLLPH 171

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV+E++ V+AHLKL  Q   + +   V  I  +L +  C NT T  LSGGQ+KRL+IAL
Sbjct: 172 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLPCANTRTGSLSGGQRKRLAIAL 229

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD  +   +V L++ +A  G  I+CT+HQPSA L  + D LYV
Sbjct: 230 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQLYV 289

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-----EADRMFEPCTNG-- 294
           L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+      +  R+      G  
Sbjct: 290 LSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMC 349

Query: 295 -----KFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLI 349
                +    ++  N     +  EE   S +  +S       + A CL+QFCIL KRT +
Sbjct: 350 DADYKRDLGGDTDVNPFLWHRPAEEDSASMEGCHS-------FSASCLTQFCILFKRTFL 402

Query: 350 KCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMI 409
              RD  LT +R++ H+ IG  +G++Y GIG++A +V +N   LFFS +FLMF AL   +
Sbjct: 403 SIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTV 462

Query: 410 ITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRF 469
           +T+PLE  +  REH N W+SLKAYYLA  +AD+P Q++  V YC  VY+++ QP +  RF
Sbjct: 463 LTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRF 522

Query: 470 AMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFK 528
            +F  +    +L +Q +G+L+G     ++     GP+T +P  +FSG+FV     P   +
Sbjct: 523 VLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPAYLQ 582

Query: 529 FLFKLSFLKHSLEGILLSVYGYDRDQLKC-YEEYCHFKSPAKFLDALDMKNGDYSYDLFF 587
           ++  +S++++  EG++LS+YG DR+ L C   E CHF+     L  LD++N     D   
Sbjct: 583 WMSYISYVRYGFEGVILSIYGLDREDLHCDIAETCHFQKSEAILRELDVENAKLYLDFIV 642

Query: 588 LIVSYILVKIASYLVLYFQINRNK 611
           L + +I +++ +Y VL ++I   +
Sbjct: 643 LGIFFISLRLIAYFVLRYKIRAER 666

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Mus musculus (taxid: 10090)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/631 (39%), Positives = 375/631 (59%), Gaps = 40/631 (6%)

Query: 7   ELQDLKKSPRKH-FNLLFQDISYS---ALYYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
           E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct: 62  EAQRFSSLPRRAAVNIEFRDLSYSVPEGPWWRKKGY----KTLLKGISGKFNSGELVAIM 117

Query: 63  GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct: 118 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RDLRCFRKVSCYIMQDDMLLPH 171

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C NT T  LSGGQ+KRL+IAL
Sbjct: 172 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIAL 229

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L  + D LYV
Sbjct: 230 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYV 289

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-----EADRMFEPCTNG-- 294
           L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+      +  R+      G  
Sbjct: 290 LSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMC 349

Query: 295 -----KFFNANSSHN-------TKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCI 342
                +    ++  N       ++ V +T   KGL  ++  S +     + A CL+QFCI
Sbjct: 350 DSDHKRDLGGDAEVNPFLWHRPSEEVKQTKRLKGL--RKDSSSMEGCHSFSASCLTQFCI 407

Query: 343 LLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMF 402
           L KRT +   RD  LT +R++ H+ IG  +G++Y GIG++A +V +N   LFFS +FLMF
Sbjct: 408 LFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMF 467

Query: 403 TALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQ 462
            AL   ++T+PLE  +  REH N W+SLKAYYLA  +AD+P Q++  V YC  VY+++ Q
Sbjct: 468 AALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQ 527

Query: 463 PLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQR 521
           P +  RF +F  +    +L +Q +G+L+G     ++     GP+T +P  +FSG+FV   
Sbjct: 528 PSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFD 587

Query: 522 DSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKC-YEEYCHFKSPAKFLDALDMKNGD 580
             P   +++  +S++++  EG++LS+YG DR+ L C  +E CHF+     L  LD++N  
Sbjct: 588 TIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDETCHFQKSEAILRELDVENAK 647

Query: 581 YSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
              D   L + +I +++ +Y VL ++I   +
Sbjct: 648 LYLDFIVLGIFFISLRLIAYFVLRYKIRAER 678

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1

 Score =  229 bits (583), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 159/590 (26%), Positives = 283/590 (47%), Gaps = 32/590 (5%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K +LK+ SGV    EL  ++G SG+GKT LL+  A +R  K  + +   I +      D 
Sbjct: 101 KHLLKNDSGVAYPGELLAVMGSSGAGKTTLLNASA-FRSSKGVQISPSTIRMLNGHPVDA 159

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           + ++    Y+ QD+L    LT  E L   A +++    ++K K  +VD +   LS+  C+
Sbjct: 160 KEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQ 219

Query: 163 NTL------TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
           NTL       K LSGG++KRL+ A E L++P ++  DEPT+GLD   A ++V++L+ ++ 
Sbjct: 220 NTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQ 279

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADY 276
           +G  +I T+HQPS+ L  + D + ++ EG   + GT    V + S  G  CP+NY PAD+
Sbjct: 280 KGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDFFSYIGATCPTNYTPADF 339

Query: 277 VIEV-------SLEA-DRMFEPCTN---GKFFNANSSHNTKTVLKTIEEKGLSSKEFYSV 325
            ++V        +E+ DR+ + C N   GK     S    +   K ++  G   ++    
Sbjct: 340 YVQVLAVVPGREVESRDRVAKICDNFAVGKV----SREMEQNFQKLVKSNGFGKED---- 391

Query: 326 LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAAR 385
              E  Y A    QF  +L R+ +   ++  L KVRL    ++   +G+++ G       
Sbjct: 392 -ENEYTYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLLQTTMVAVLIGLIFLGQQLTQVG 450

Query: 386 VHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQ 445
           V N    +F     + F    + I  +  E  +  RE  +R +    Y+L   +A++P+ 
Sbjct: 451 VMNINGAIFLFLTNMTFQNSFATITVFTTELPVFMRETRSRLYRCDTYFLGKTIAELPLF 510

Query: 446 LLCTVIYCVTVY-FISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKN-GVIFG 503
           L+   ++    Y  I  +P  +D F   L +   +   S   G L+       +  +  G
Sbjct: 511 LVVPFLFTAIAYPLIGLRP-GVDHFFTALALVTLVANVSTSFGYLISCACSSTSMALSVG 569

Query: 504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYG-YDRDQLKCYEEYC 562
           P  ++P+ +F G+F+     P  FK+L  LS+ +++ EG+L++ +      ++ C     
Sbjct: 570 PPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLINQWADVKPGEITCTLSNT 629

Query: 563 HFKSPAK-FLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
              S  +  L+ L+    D  +D   L +  +  +I++Y+ L  +  R +
Sbjct: 630 TCPSSGEVILETLNFSASDLPFDFIGLALLIVGFRISAYIALTMRARRKE 679

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Ceratitis capitata (taxid: 7213)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  228 bits (582), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 156/600 (26%), Positives = 289/600 (48%), Gaps = 27/600 (4%)

Query: 30  ALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS 89
            L+ +        K +LK++ GV    EL  ++G SG+GKT LL+ LA +R P+  + + 
Sbjct: 97  GLFCNERHIPAPRKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALA-FRSPQGIQVSP 155

Query: 90  GYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
             + +   +  D + ++    Y+ QD+L    LT  E L   A +++    + + + ++V
Sbjct: 156 SGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARV 215

Query: 150 DSIADSLSISTCKNTL------TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           D +   LS+S C++T+       K LSGG++KRL+ A E L++P ++  DEPT+GLD   
Sbjct: 216 DQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFT 275

Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           A ++V++L+ ++ +G  +I T+HQPS+ L  + D + ++ EG   + GT    V + S  
Sbjct: 276 AHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYV 335

Query: 264 GYQCPSNYNPADYVIEV-------SLEA-DRMFEPCTNGKFFNANSSHNTKTVLKTIE-E 314
           G QCP+NYNPAD+ ++V        +E+ DR+ + C N  F  +  + + + +L T   E
Sbjct: 336 GAQCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDN--FAISKVARDMEQLLATKNLE 393

Query: 315 KGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGI 374
           K L   E          Y A    QF  +L R+ +   ++  L KVRL    ++   +G+
Sbjct: 394 KPLEQPE------NGYTYKATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGL 447

Query: 375 MYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYY 434
           ++ G       V N    +F     + F  + + I  +  E  +  RE  +R +    Y+
Sbjct: 448 IFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYF 507

Query: 435 LATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL 494
           L   +A++P+ L   +++    Y +      +  F   L +   +   S   G L+    
Sbjct: 508 LGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCAS 567

Query: 495 DVKNGVI-FGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYG-YDR 552
              +  +  GP  ++P+ +F G+F+     P   K+L  LS+ +++ EG+L++ +   + 
Sbjct: 568 SSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVEP 627

Query: 553 DQLKCYEEYCHFKSPAK-FLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
            ++ C        S  K  L+ L+    D   D   L +  +  ++ +YL L  +  R +
Sbjct: 628 GEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAYLALRLRARRKE 687

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score =  227 bits (579), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/564 (27%), Positives = 285/564 (50%), Gaps = 36/564 (6%)

Query: 6   AELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPS 65
           AE +D      +   + +++I+ S    D  S S++   +LK++SG      L  I+GPS
Sbjct: 55  AETEDGGGDSIRPVTIRWRNITCS--LSDKSSKSVRF--LLKNVSGEAKPGRLLAIMGPS 110

Query: 66  GSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLLQELLT 123
           GSGKT LL++LAG          SG +E+N   +  + +++      ++ Q++L    LT
Sbjct: 111 GSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKL-----AFVRQEDLFFSQLT 165

Query: 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT-----KHLSGGQKKRLS 178
           V E+L+ AA L+L    S + ++  V+++   L + +C ++       + +SGG+KKRLS
Sbjct: 166 VRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLS 225

Query: 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
           +A EL+++PS+IF DEPTTGLD   A  +++ L+ +A  G  +IC++HQP  S+    D 
Sbjct: 226 LACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDD 285

Query: 239 LYVLTEGYCTYQGTVPGLVP--YLSDFGYQCPSNYNPADYVIE-VSLEADRMFEPCTNGK 295
           + +LTEG   Y G   G  P  Y  +FG+ CP + NPA+++ + +S++        ++ K
Sbjct: 286 IVLLTEGTLVYAGPA-GKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQK 344

Query: 296 -------FFNANSS---HNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLK 345
                   F+  SS   + T   +K   + G+  +    V  T+         QF +LLK
Sbjct: 345 RVHALVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTD-----GWWRQFFLLLK 399

Query: 346 RTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL 405
           R  ++  RD    KVR  + +      G ++  +G     + + + LL  + +     AL
Sbjct: 400 RAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAAL 459

Query: 406 SSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLE 465
           +  +  +P E  I  RE     +SL  Y L+  +A+IP+     +++   +Y +++    
Sbjct: 460 TKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPT 519

Query: 466 LDRFAMFLLICVFLTLYSQGMGVLVG-MILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSP 524
           L RF  F  I    +  +  MG+ VG M+   +  +  GP  +  + +F GY+V   ++P
Sbjct: 520 LSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTP 579

Query: 525 DCFKFLFKLSFLKHSLEGILLSVY 548
             F+++ + S ++ + +G+ ++ +
Sbjct: 580 IIFRWIPRASLIRWAFQGLCINEF 603

Arabidopsis thaliana (taxid: 3702)

>sp|Q27256|WHITE_ANOGA Protein white OS=Anopheles gambiae GN=w PE=2 SV=1

 Score =  225 bits (573), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 160/585 (27%), Positives = 282/585 (48%), Gaps = 19/585 (3%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K +LK+++GV  S EL  ++G SG+GKT LL+ LA +R P   + +   +        + 
Sbjct: 113 KHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALA-FRSPPGVKISPNAVRALNGVPVNA 171

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
             LR    Y+ QD+L    LT  E L   A L++G       K+ +V  +   LS+  C 
Sbjct: 172 EQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEVLQELSLVKCA 231

Query: 163 NTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
           +T+       K LSGG++KRL+ A E L++P ++  DEPT+GLD   A +++++L+ MA 
Sbjct: 232 DTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAM 291

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADY 276
           +G  II T+HQPS+ L  + D + ++ EG   + G+      + S  G  CP NYNPAD+
Sbjct: 292 KGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGIPCPPNYNPADF 351

Query: 277 VIEVSLEADRMFEPCTN--GKFFNANS-SHNTKTVLKTIEEKGLSSKEFYSVLSTE---- 329
            +++   A      C +   K  ++ + S   + VL+T    G    E Y +   E    
Sbjct: 352 YVQMLAIAPAKEAECRDMIKKICDSFAVSPIAREVLETASVAGKGMDEPYMLQQVEGVGS 411

Query: 330 IPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHN- 388
             Y +   +QF  +L R+ +   +D  L KVRL    ++ + +G +Y G   D   V N 
Sbjct: 412 TGYRSSWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAMVATLIGSIYFGQVLDQDGVMNI 471

Query: 389 NLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLC 448
           N SL  F T  + F  + ++I  +  E  +  RE  +R + +  Y+L   +A++P+ +  
Sbjct: 472 NGSLFLFLTN-MTFQNVFAVINVFSAELPVFLREKRSRLYRVDTYFLGKTIAELPLFIAV 530

Query: 449 TVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTL 507
             ++    Y +         +   L I   +   S   G L+      +   +  GP  +
Sbjct: 531 PFVFTSITYPMIGLRTGATHYLTTLFIVTLVANVSTSFGYLISCASSSISMALSVGPPVV 590

Query: 508 LPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRD-QLKCYEEYCHFKS 566
           +P+ IF G+F+     P  FK+L  LS+ +++ E +L++ +    D ++ C         
Sbjct: 591 IPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEALLINQWSTVVDGEIACTRANVTCPR 650

Query: 567 PAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
               L+  + +  D++ D+  L    +L ++ + L L+ + +R+K
Sbjct: 651 SEIILETFNFRVEDFALDIACLFALIVLFRLGALLCLWLR-SRSK 694

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Anopheles gambiae (taxid: 7165)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  223 bits (567), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 182/638 (28%), Positives = 315/638 (49%), Gaps = 73/638 (11%)

Query: 17  KHFNLLFQDISYSALYYDTHSYSIKSKD-----------------ILKDISGVFVSKELS 59
           +  ++L Q +    L ++  +YSIKS+                  +LK +SG+    EL 
Sbjct: 54  RQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKPGELL 113

Query: 60  VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
            +LGPSGSGKT L+  LAG  + K     SG +  N         +++++ ++ QD++L 
Sbjct: 114 AMLGPSGSGKTTLVTALAGRLQGKL----SGTVSYNGEPFTSS--VKRKTGFVTQDDVLY 167

Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-----LTKHLSGGQK 174
             LTV E+LT  A L+L  + +RK K  +V+ +   L ++ C N+     L + +SGG++
Sbjct: 168 PHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGER 227

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234
           KR+SI  E+L NPS++ LDEPT+GLD   A  +V  LR +A  G  ++ T+HQPS+ L  
Sbjct: 228 KRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIHQPSSRLYR 287

Query: 235 MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNY-NPADYVIE----VSLEADRMFE 289
           M D + VL+EG   Y G    ++ Y    GYQ  S++ NPAD+V++    ++ +  +  +
Sbjct: 288 MFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGITSDTKQYDQ 347

Query: 290 PCTNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIP------------------ 331
             TNG+       ++ K  L +  +K L     Y  L  E+                   
Sbjct: 348 IETNGRLDRLEEQNSVKQSLISSYKKNL-----YPPLKEEVSRTFPQDQTNARLRKKAIT 402

Query: 332 --YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNN 389
             +P     QF +LLKR L +   + F + +R+ + + +    G+++       A + + 
Sbjct: 403 NRWPTSWWMQFSVLLKRGLKERSHESF-SGLRIFMVMSVSLLSGLLW--WHSRVAHLQDQ 459

Query: 390 LSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCT 449
           + LLFF ++F  F  L + I T+P E  +  +E  +  + L +YY+A  V D+P++L+  
Sbjct: 460 VGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILP 519

Query: 450 VIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL-DVKNGVIFGPLTLL 508
            I+    Y++      L  F M L+I ++  L +QG+G+ +G IL D K       + +L
Sbjct: 520 TIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLML 579

Query: 509 PWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPA 568
            + +  GY++  +  P    +L  +SF  +  + ++   Y +D    + YE  C      
Sbjct: 580 VFLLAGGYYI--QHIPGFIAWLKYVSFSHYCYKLLVGVQYTWD----EVYE--CGSGLHC 631

Query: 569 KFLDALDMKN---GDYSYDLFFLIVSYILVKIASYLVL 603
             +D   +KN   G+  +D+  L V  +L ++ +YL L
Sbjct: 632 SVMDYEGIKNLRIGNMMWDVLALAVMLLLYRVLAYLAL 669

Arabidopsis thaliana (taxid: 3702)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score =  219 bits (558), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 157/590 (26%), Positives = 286/590 (48%), Gaps = 32/590 (5%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K ++K++ GV    EL  ++G SG+GKT LL+ LA +R  +  + +   + +      D 
Sbjct: 99  KHLIKNVCGVAYPGELLAVMGSSGAGKTTLLNALA-FRSARGVQISPSSVRMLNGHPVDA 157

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           + ++    Y+ QD+L    LT  E L   A +++    ++K K  +VD +   LS+  C+
Sbjct: 158 KEMQARCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVIQDLSLIKCQ 217

Query: 163 NTL------TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
           NT+       K LSGG++KRL+ A E L++P ++  DEPT+GLD   A ++V++L+ ++ 
Sbjct: 218 NTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQ 277

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADY 276
           +G  +I T+HQPS+ L  + D + ++ EG   + GT    V + S  G QCP+NYNPAD+
Sbjct: 278 RGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPVEAVDFFSFIGAQCPTNYNPADF 337

Query: 277 VIEV-------SLEA-DRMFEPCTN---GKFFNANSSHNTKTVLKTIEEKGLSSKEFYSV 325
            ++V        +E+ DR+ + C N   GK       +  K   KT    GL   +    
Sbjct: 338 YVQVLAVVPGREIESRDRISKICDNFAVGKVSREMEQNFQKIAAKT---DGLQKDD---- 390

Query: 326 LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAAR 385
             T I Y A   +QF  ++ R+ I   ++  L KVRL    ++   +G+++         
Sbjct: 391 -ETTILYKASWFTQFRAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQPMTQVG 449

Query: 386 VHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQ 445
           V N    +F     + F  + ++I  +  E  +  RE  +R +    Y+L   +A++P+ 
Sbjct: 450 VMNINGAIFLFLTNMTFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTLAELPLF 509

Query: 446 LLCTVIYCVTVY-FISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFG 503
           L+   ++    Y  I  +P  +  F   L +   +   S   G L+          +  G
Sbjct: 510 LVVPFLFIAIAYPMIGLRP-GITHFLSALALVTLVANVSTSFGYLISCASTSTSMALSVG 568

Query: 504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYG-YDRDQLKCYEEYC 562
           P   +P+ +F G F+     P  FK+L   S+ +++ EG+L++ +      ++ C     
Sbjct: 569 PPLTIPFLLFGGVFLNSGSVPVYFKWLSYFSWFRYANEGLLINQWADVQPGEITCTSTNT 628

Query: 563 HFKSPAKF-LDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
              S     L+ L+ ++  +++ L+ LI+  ++ +IA Y+    +  R +
Sbjct: 629 TCPSSGXVXLETLNFRD-KFTFRLYGLILLILIFRIAGYVAXKMRTKRKE 677

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

>sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1

 Score =  209 bits (531), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 168/614 (27%), Positives = 298/614 (48%), Gaps = 51/614 (8%)

Query: 20  NLLFQDISYSALYYDTH----SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI 75
            L F+++ Y      T     S+  K K IL  I+G+    E   +LGPSGSGKT LL  
Sbjct: 52  TLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSA 111

Query: 76  LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135
           L G    + ++T SG +  N         +++ + ++ QD++L   LTV E+L   A L+
Sbjct: 112 LGG----RLSKTFSGKVMYNGQPFSG--CIKRRTGFVAQDDVLYPHLTVWETLFFTALLR 165

Query: 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSII 190
           L +  +R  K   VD +   L ++ C N++      + +SGG+KKR+SI  E+L NPS++
Sbjct: 166 LPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLL 225

Query: 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250
            LDEPT+GLD   A  +V  ++ +A  G  ++ T+HQPS+ + +M D + +L+EG   Y 
Sbjct: 226 LLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYY 285

Query: 251 GTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTKTVLK 310
           G     V Y S  G+      NPAD ++++   A+ +  P    K  +       K  L 
Sbjct: 286 GAASSAVEYFSSLGFSTSLTVNPADLLLDL---ANGI--PPDTQKETSEQEQKTVKETLV 340

Query: 311 TIEEKGLSSK-------------EFYSVLSTEIPYPADCLS---QFCILLKRTLIKCFRD 354
           +  EK +S+K             E+    +  +     C +   QF +LL+R  ++  R 
Sbjct: 341 SAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQWCTTWWYQFTVLLQRG-VRERRF 399

Query: 355 RFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPL 414
               K+R+   +I  +FLG +        + + +  +LLFF ++F  F  L + + T+P 
Sbjct: 400 ESFNKLRI-FQVISVAFLGGLLW-WHTPKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQ 457

Query: 415 EFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLL 474
           E  +  +E  +  + L +Y++A  V D+P++L     +   +Y++     +   F + LL
Sbjct: 458 EKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPDPTTFILSLL 517

Query: 475 ICVFLTLYSQGMGVLVG-MILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKL 533
           + ++  L +QG+G+  G +++++K       +T L + I  GY+V Q+  P    F+  L
Sbjct: 518 VVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYV-QQIPP----FIVWL 572

Query: 534 SFLKHS--LEGILLSVYGYDRDQLKCYEE-YCHFKSPAKFLDALDMKNGDYSYDLFFLIV 590
            +L +S     +LL +   D D  +C +  +C       F     M   +   D+F + V
Sbjct: 573 KYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRV---GDFPAIKSMGLNNLWIDVFVMGV 629

Query: 591 SYILVKIASYLVLY 604
             +  ++ +Y+ L+
Sbjct: 630 MLVGYRLMAYMALH 643

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
91081779	655	PREDICTED: similar to abc transporter [T	0.977	0.912	0.420	1e-143
380019275	642	PREDICTED: ATP-binding cassette sub-fami	0.967	0.922	0.417	1e-140
110765180	645	PREDICTED: ATP-binding cassette sub-fami	0.967	0.917	0.417	1e-139
383855252	640	PREDICTED: ATP-binding cassette sub-fami	0.946	0.904	0.425	1e-138
380011711	752	PREDICTED: ATP-binding cassette sub-fami	0.972	0.791	0.402	1e-135
332031002	738	ATP-binding cassette sub-family G member	0.970	0.804	0.412	1e-135
328789995	752	PREDICTED: ATP-binding cassette sub-fami	0.972	0.791	0.407	1e-135
350417922	642	PREDICTED: ATP-binding cassette sub-fami	0.955	0.911	0.424	1e-134
340728245	738	PREDICTED: ATP-binding cassette sub-fami	0.972	0.806	0.396	1e-134
350403084	740	PREDICTED: ATP-binding cassette sub-fami	0.972	0.804	0.404	1e-134

>gi|91081779|ref|XP_973526.1| PREDICTED: similar to abc transporter [Tribolium castaneum] gi|270005045|gb|EFA01493.1| hypothetical protein TcasGA2_TC007047 [Tribolium castaneum]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/632 (42%), Positives = 389/632 (61%), Gaps = 34/632 (5%)

Query: 4   EEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILG 63
           E+  L   ++S     ++ F+D++Y+           K +D+L+ ++G F + EL+ I+G
Sbjct: 30  EDGPLAKYQQSSTGLVHVGFKDLTYTV---KEGILRRKPRDLLRKVNGEFSAGELTAIMG 86

Query: 64  PSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123
           PSG+GK+ L++ILAGY R       +G + +N    ++    RK+SCYIMQ++ LQ LLT
Sbjct: 87  PSGAGKSTLMNILAGYTR----SGVAGKLLVNGEE-REESTFRKQSCYIMQNDNLQPLLT 141

Query: 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
           V E++TVAA+LKL  + + + K+S+V  I +S+++   +   T  LSGGQKKRLSIALEL
Sbjct: 142 VHEAMTVAANLKLSARNTHREKQSRVKEILESINLWQNRKVKTCSLSGGQKKRLSIALEL 201

Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243
           L NP ++F DEPT+GLD L +   V LL+ +A  G  +ICT+HQPSA +  M D+LY + 
Sbjct: 202 LKNPQVMFFDEPTSGLDSLTSKQCVMLLKQIASTGRTVICTIHQPSAMIFEMFDHLYAVA 261

Query: 244 EGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS------------LEADRMFEPC 291
            GYC YQGTV GL+PYL     +CP  +NPADY++EV+             ++D      
Sbjct: 262 NGYCIYQGTVEGLLPYLEQSNLKCPPYHNPADYLLEVASGDYGDFTEILVKQSDNGLNQE 321

Query: 292 TNGKFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIP--------------YPADCL 337
              K  N+    +   + K +E   ++  +   +L  +I               YP    
Sbjct: 322 WRNKQRNSLQFQSLDHIDKLMESGQITPVKAPPILFKKITNGNAKEATFCGNSQYPTSFC 381

Query: 338 SQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFST 397
           +Q  +LLKRT +   RDR LT  R+S HL I  F+G +Y GIG+DA+ V NN + LFFS 
Sbjct: 382 NQIYVLLKRTFLLISRDRTLTYSRISTHLGIALFIGTLYHGIGEDASNVLNNFNFLFFSV 441

Query: 398 MFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVY 457
           MFLM TA + +  T+P E  I  REHFN+W+SLK+YYLA  +ADIP+Q++ T++Y +  Y
Sbjct: 442 MFLMLTAFNCVTTTFPSELPIITREHFNKWYSLKSYYLAITLADIPIQMVATLLYAIVTY 501

Query: 458 FISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYF 517
           F++ QP+E  R   FL +CV ++L +Q  G+ +G I+D+KNGVIFGP   LP+TIFSG+F
Sbjct: 502 FLTMQPVEAFRIFSFLFMCVLISLVAQSFGLFIGAIMDIKNGVIFGPFCFLPFTIFSGFF 561

Query: 518 VLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMK 577
           V   DS    ++LF +SFLK+ LEG++LSV GYDR +L C  +YCHF  P KFLD +DM+
Sbjct: 562 VQLNDSHPYMRWLFHISFLKYGLEGLVLSVLGYDRGKLPCSADYCHFVYPEKFLDQMDME 621

Query: 578 NGDYSYDLFFLIVSYILVKIASYLVLYFQINR 609
              YS  + F++    +++IA+Y  L  QI +
Sbjct: 622 YAQYSTAVIFMLSLVAIIRIAAYFALSLQIKK 653

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019275|ref|XP_003693536.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis florea]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 391/623 (62%), Gaps = 31/623 (4%)

Query: 7   ELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSG 66
           +L+DL       F L+F+DI+YSA  +     S +  ++LK++SG F + EL+ I+G SG
Sbjct: 29  KLEDLMDIHNSIF-LVFEDITYSARPW---ILSRRKTELLKNVSGEFRAGELTAIMGLSG 84

Query: 67  SGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE 126
           +GK+ L+D+L G+     T   +G I +N ++ ++    R+ S YIMQ++ LQ LLTV+E
Sbjct: 85  AGKSTLMDVLTGF----TTAGVTGNIMVN-SKTRNLNEFRRLSAYIMQNDNLQPLLTVQE 139

Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
           ++ VAA LKL    S + K+ K+D I  ++S+ TC++T T  LSGG++KRL+IALEL+++
Sbjct: 140 AMNVAAELKLTT--SHQQKKQKIDQILVTMSLDTCRHTRTGQLSGGERKRLAIALELINS 197

Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
           P I+FLDEPT+GLD + +   + LL+ +A  G  +IC++HQPSASLLNM D+LYV+ +G 
Sbjct: 198 PPILFLDEPTSGLDSVTSKYCITLLKQLAKAGQTVICSIHQPSASLLNMIDHLYVVADGN 257

Query: 247 CTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEV-----SLEADRMFEPCTNGKFFNANS 301
           C Y G+   LVPYLS  G QCP++YNPADY++E+           M     NGK     S
Sbjct: 258 CVYSGSTQNLVPYLSSLGLQCPTHYNPADYLMEICNGDYGKYVPEMINAIENGKNNAWRS 317

Query: 302 SHNTKTVLKTIEEKGLSSKEFYSVLSTEIP---------------YPADCLSQFCILLKR 346
           + N   V    E   L+    +  L    P               Y  +   Q  ILLKR
Sbjct: 318 TSNVTNVNHQEEVIALNVTASFQALRQRSPVEIQHVHTRHKGSPDYATNFWKQLIILLKR 377

Query: 347 TLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALS 406
             I+  RD+ LT  RLS+H II   +G++Y  +G DA  V +N +LLFF+ MFLMF+A S
Sbjct: 378 NAIRLSRDKVLTFTRLSMHFIIALIVGVIYFKVGQDAVYVLDNFNLLFFNIMFLMFSAFS 437

Query: 407 SMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLEL 466
           + + T+P E  I  REHFNRW+ L ++YLA  +ADIP+Q     +Y + VY++S Q LEL
Sbjct: 438 ATVTTFPSELPIIMREHFNRWYKLHSFYLANKLADIPIQFTAISLYILIVYYMSDQLLEL 497

Query: 467 DRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDC 526
            RF ++ L+C  +++ +Q  G+L+G  + V++G+IFGPLT+LP+ IFSG+FV  RD+   
Sbjct: 498 QRFCLYTLMCFAVSIVAQTFGLLIGTGMKVQHGMIFGPLTILPFLIFSGFFVQFRDAHPY 557

Query: 527 FKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF 586
            ++LF LSFLK+  EG+++++YGYDR +L C + YCHF  P   L+A+DMK  +Y + L 
Sbjct: 558 LRWLFHLSFLKYGFEGVMIAIYGYDRPKLSCSDVYCHFAIPETLLNAVDMKQANYWFCLI 617

Query: 587 FLIVSYILVKIASYLVLYFQINR 609
            L+  Y+++ I +Y +L  ++ +
Sbjct: 618 VLVALYVMLDIGTYTLLKLKLEK 640

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110765180|ref|XP_624748.2| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis mellifera]

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 391/623 (62%), Gaps = 31/623 (4%)

Query: 7   ELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSG 66
           +L+DL       F L+F+DI+YSA  +     S +  ++LK++SG F + EL+ I+G SG
Sbjct: 32  KLEDLMDIHNSIF-LVFEDITYSAKPW---ILSRRKTELLKNVSGEFRAGELTAIMGLSG 87

Query: 67  SGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE 126
           +GK+ L+D+L G+     T   +G I +N ++ ++    R+ S YIMQ++ LQ LLTV+E
Sbjct: 88  AGKSTLMDVLTGF----TTAGVTGNIMVN-SKTRNLNEFRRLSAYIMQNDNLQPLLTVQE 142

Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
           ++ VAA LKL    S + K+ K+D I  ++S+ TC++T T  LSGG++KRL+IALEL+++
Sbjct: 143 AMNVAAELKLTT--SHQQKKQKIDQILVTMSLDTCRHTRTGQLSGGERKRLAIALELINS 200

Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
           P I+FLDEPT+GLD + +   + LL+ +A  G  +IC++HQPSASLLNM D+LYV+ +G 
Sbjct: 201 PPILFLDEPTSGLDSVTSKYCITLLKQLAKAGQTVICSIHQPSASLLNMIDHLYVVADGN 260

Query: 247 CTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEV-----SLEADRMFEPCTNGKFFNANS 301
           C Y G+   LVPYLS  G QCP++YNPADY++E+           M     NGK     S
Sbjct: 261 CVYSGSTQNLVPYLSSLGLQCPTHYNPADYLMEICNGDYGKYVPEMINAIENGKNNAWRS 320

Query: 302 SHNTKTVLKTIEEKGLSSKEFYSVLSTEIP---------------YPADCLSQFCILLKR 346
           + N   V    E   L+    +  L    P               Y  +   Q  ILLKR
Sbjct: 321 TSNVTNVNHQEEVIALNVTASFQALRQRSPVEIQHVHTRHKGSPDYATNFWKQLIILLKR 380

Query: 347 TLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALS 406
             I+  RD+ LT  RLS+H II   +G++Y  +G DA  V +N +LLFF+ MFLMF+A S
Sbjct: 381 NAIRLSRDKVLTFTRLSMHFIIALIVGVIYFKVGQDAVYVLDNFNLLFFNIMFLMFSAFS 440

Query: 407 SMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLEL 466
           + + T+P E  I  REHFNRW+ L ++YLA  +ADIP+Q     +Y + VY++S Q LEL
Sbjct: 441 ATVTTFPSELPIIMREHFNRWYKLHSFYLANKLADIPIQFTAISLYILIVYYMSDQLLEL 500

Query: 467 DRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDC 526
            RF ++ L+C  +++ +Q  G+L+G  + V++G+IFGPLT+LP+ IFSG+FV  RD+   
Sbjct: 501 QRFCLYTLMCFAVSIVAQTFGLLIGTGMKVQHGMIFGPLTILPFLIFSGFFVQFRDAHPY 560

Query: 527 FKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF 586
            ++LF LSFLK+  EG+++++YGYDR +L C + YCHF  P   L+A+DMK  +Y + L 
Sbjct: 561 LRWLFHLSFLKYGFEGVMIAIYGYDRPKLSCSDVYCHFAIPETLLNAVDMKQANYWFCLI 620

Query: 587 FLIVSYILVKIASYLVLYFQINR 609
            L+  Y+++ I +Y +L  ++ +
Sbjct: 621 VLVALYVMLDIGTYTLLKLKLEK 643

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855252|ref|XP_003703130.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Megachile rotundata]

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/607 (42%), Positives = 384/607 (63%), Gaps = 28/607 (4%)

Query: 21  LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80
           L+F+D+SY A  +     S +  ++LK++SG F + EL+ I+G SG+GK+ L+D+LAG+ 
Sbjct: 42  LVFEDVSYKARPW---ILSREKTELLKNLSGEFRAGELTAIMGLSGAGKSTLMDVLAGF- 97

Query: 81  RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
               T   +G I +N ++ ++    R+ S YIMQ++ LQ LLTV+E++ VAA LKL    
Sbjct: 98  ---ITSGVTGNIMVN-SKARNLDEFRRLSAYIMQNDNLQPLLTVQEAMNVAAELKL--TA 151

Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           S + K+ K++ I  ++S+  C++T T  LSGG++KRL+IALELL+ P I+FLDEPT+GLD
Sbjct: 152 SPQQKKQKIEQILITMSLDICRHTRTGQLSGGERKRLAIALELLNCPPILFLDEPTSGLD 211

Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYL 260
            + +   + LL+ +A  G  +IC++HQPSASLLNM D+LYV+ +G C Y G+   LVPYL
Sbjct: 212 SVTSKYCITLLKQLAKSGQTVICSIHQPSASLLNMVDHLYVVADGSCVYTGSTQNLVPYL 271

Query: 261 SDFGYQCPSNYNPADYVIEV-----SLEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEK 315
           S  G QCP++YNPADY++E+           + +   NGK     S+ N  T  +  E  
Sbjct: 272 SSLGLQCPTHYNPADYLMEICNGDYGKHVPGLIDAIENGKNNAWRSTSNVTTANRQEEVI 331

Query: 316 GLSSKEFYSVLSTEIPYPAD-------------CLSQFCILLKRTLIKCFRDRFLTKVRL 362
            L+    +  L    P  AD                Q  +LLKR  I+  RD+ LT  RL
Sbjct: 332 ALNVMASFQALRQRPPMAADYAPRRKGSEYATNFWKQLIVLLKRNTIRLSRDKVLTFTRL 391

Query: 363 SLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRRE 422
           S+H +I   +G +Y  IG DA  V +N +LLFF+ MFLMF+A S+ + T+PLE  I  RE
Sbjct: 392 SMHFVIALLVGTIYFQIGQDAVYVLDNFNLLFFNIMFLMFSAFSATVTTFPLELPIIMRE 451

Query: 423 HFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLY 482
           HFNRW+ L ++YLA  +ADIP+QL    +Y + VY++S Q LEL RF M+ L+C  +++ 
Sbjct: 452 HFNRWYKLHSFYLANKLADIPIQLTAISLYILIVYYMSDQLLELRRFCMYTLMCCAVSIV 511

Query: 483 SQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEG 542
           +Q  G+LVG  + V++G+IFGPLT+LP+ IFSG+FV  R +    ++LF LSFLK+  EG
Sbjct: 512 AQTFGLLVGTGMKVQHGMIFGPLTILPFLIFSGFFVQFRHAHPYLRWLFHLSFLKYGFEG 571

Query: 543 ILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLV 602
           +++++YGY+R +L C + YCHF  P K L A+DM   DY +  F L   YI++ IA++ +
Sbjct: 572 VMIAIYGYNRPKLSCSDVYCHFAVPEKLLSAMDMTQADYWFSFFVLTALYIILDIATFTL 631

Query: 603 LYFQINR 609
           L  ++ +
Sbjct: 632 LKLKLEK 638

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011711|ref|XP_003689941.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis florea]

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/648 (40%), Positives = 386/648 (59%), Gaps = 53/648 (8%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
           K     L  L K P    ++ F++++YS        Y    K ILK ++G F S EL+ I
Sbjct: 112 KRPAVTLTHLPKRPP--VDIEFKNLAYSVSEGRKRGY----KTILKCVNGKFRSGELTAI 165

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           +GPSG+GK+ L+++LAGY    KT   SG + IN  + ++ R  RK SCYIMQD+ L   
Sbjct: 166 MGPSGAGKSTLMNVLAGY----KTSHLSGSVLIN-GKDRNLRRFRKMSCYIMQDDRLLPH 220

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV E++TV+A+LKLG   S  AK+  ++ I ++L +S   NT T  LSGGQ+KRLSI L
Sbjct: 221 LTVYETMTVSANLKLGKDISATAKKIVIEEIIETLGLSDASNTQTHCLSGGQRKRLSIGL 280

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD       + LL+ ++  G  IICT+HQPSA L  M D+LY+
Sbjct: 281 ELVNNPPVMFFDEPTSGLDSSTCYQCLSLLKSLSRGGRTIICTIHQPSARLFEMFDHLYL 340

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLE-----ADRMFEPCTNGKF 296
           L EG C YQG V GLVP+LS  G +CPS +NPADYV+EV+         ++     NGK 
Sbjct: 341 LAEGQCIYQGNVGGLVPFLSSVGLECPSYHNPADYVMEVACGEHGECVHKLVMAVNNGKC 400

Query: 297 FNANSSHNTKTVLKTIEE-------------------KGLSSK----------------- 320
            N     +T   ++T+                      G++ K                 
Sbjct: 401 ANYQHYQSTMNAVQTVSNDIAKESPQQETKSETALIPNGVAKKPNSGTVINIPISCTTSL 460

Query: 321 -EFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
            +    +  ++ +P +  +QF ILLKR  +   RD  LT+VRL  H+I+G  +G +Y  I
Sbjct: 461 LDSAESIEQKVGFPTNSWTQFWILLKRIFLSQIRDMTLTRVRLISHIIVGFLIGAIYYDI 520

Query: 380 GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMV 439
           G+DA+RV +N   +FF+ MFLMFTA+   I+T+P+E  +  REH N W+S+KAYYLA  +
Sbjct: 521 GNDASRVMSNAGCVFFTVMFLMFTAMMPTILTFPIEMAVFVREHLNYWYSVKAYYLARTL 580

Query: 440 ADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNG 499
           AD+P Q++ ++ Y + VYF++ QPLE +RF M+L IC+   L SQ +G+++G  + V+ G
Sbjct: 581 ADVPFQIVYSIAYVIIVYFMTSQPLETNRFMMYLTICILTALVSQSIGLVIGSAMSVETG 640

Query: 500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE 559
           V  GP++ +P  +FSG+FV     P   KFL  +S++++S EG ++SVYGY+R +LKC +
Sbjct: 641 VFIGPVSSVPIVLFSGFFVNFDAIPKYLKFLSYVSYVRYSFEGTMISVYGYNRAKLKCSD 700

Query: 560 EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
            YCHFKSP KFL+ + M+N  +  D   L    + +++ +Y VL  ++
Sbjct: 701 AYCHFKSPTKFLEEMSMQNAVFWQDAVALTGFLLTLRVIAYFVLRLKL 748

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031002|gb|EGI70628.1| ATP-binding cassette sub-family G member 1 [Acromyrmex echinatior]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/650 (41%), Positives = 387/650 (59%), Gaps = 56/650 (8%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
           K     L  L K P    ++ F++++YS        Y    K ILK ++G F S EL+ I
Sbjct: 97  KRPAVSLTHLPKRPP--VDVEFKNLAYSVSEGRKRGY----KTILKCVNGKFRSGELTAI 150

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           +GPSG+GK+ L+++LAGY    KT   SG + IN  + ++ R  RK SCYIMQD+ L   
Sbjct: 151 MGPSGAGKSTLMNVLAGY----KTSHLSGSVLIN-GKDRNLRTFRKMSCYIMQDDRLLPH 205

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV E++TV+A+LKLG   S  AK+  ++ I ++L +    NT T+ LSGGQ+KRLSIAL
Sbjct: 206 LTVYEAMTVSANLKLGKDISATAKKVVIEEIIETLGLREASNTQTQSLSGGQRKRLSIAL 265

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD       + LL+ ++  G  IICT+HQPSA L  M D+LY+
Sbjct: 266 ELVNNPPVMFFDEPTSGLDSSACFQCLSLLKSLSRGGRTIICTIHQPSARLFEMFDHLYL 325

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLE-----ADRMFEPCTNGKF 296
           L EG C YQG V GLVP+LS  G  CPS +NPADYV+EV+         ++     NGK 
Sbjct: 326 LAEGQCIYQGNVGGLVPFLSSMGLDCPSYHNPADYVMEVACGEHGECVHKLVMAVNNGKC 385

Query: 297 FN---------------------------------------ANSSHNTKTVLKTIEEKGL 317
            N                                       A SS  T TV+        
Sbjct: 386 NNYQHHQAAIAAAQTVSNDIAKESPQEQTKPEGAALIPNGVAKSSTGT-TVINMPVSCTT 444

Query: 318 SSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYR 377
           S  +    +  ++ +P +   QF ILLKRT +   RD  LTKVRL  H+I+G  +G +Y 
Sbjct: 445 SLLDSAESIEQKVGFPTNGWMQFWILLKRTFMSQIRDLTLTKVRLISHIIVGFLIGAIYY 504

Query: 378 GIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLAT 437
            IG++A+ V +N   +FF+ MFLMFTA+   I+T+P+E  +  REH N W+S+KA+YLA 
Sbjct: 505 DIGNEASEVMSNAGCVFFTVMFLMFTAMMPTILTFPMEMSVFVREHLNYWYSVKAFYLAR 564

Query: 438 MVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVK 497
            +AD+P Q++ ++ Y + VYFI+ QPLE +RF M+L IC+  +L SQ +G+L+G  + V+
Sbjct: 565 TLADLPFQMMYSIAYVMIVYFITSQPLETERFLMYLNICILTSLVSQSIGLLIGAAMSVE 624

Query: 498 NGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKC 557
           +GV  GP+T +P  +FSG+FV     P   KFL  +S++++  EG ++SVYGY+R +LKC
Sbjct: 625 SGVFIGPVTSVPIILFSGFFVNFNAVPKYLKFLSYVSYVRYGFEGAMISVYGYNRAKLKC 684

Query: 558 YEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
            E YCHFKSP KFL+ + M+N  Y  D+  L+   +++++A Y VL  ++
Sbjct: 685 SEYYCHFKSPTKFLEQMAMENAVYWVDVVALLGFLLVLRVAVYFVLKLKL 734

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789995|ref|XP_623409.3| PREDICTED: ATP-binding cassette sub-family G member 4 [Apis mellifera]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/648 (40%), Positives = 387/648 (59%), Gaps = 53/648 (8%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
           K     L  L K P    ++ F++++YS        Y    K ILK ++G F S EL+ I
Sbjct: 112 KRPAVTLTHLPKRPP--VDIEFKNLAYSVSEGRKRGY----KTILKCVNGKFRSGELTAI 165

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           +GPSG+GK+ L+++LAGY    KT   +G + IN  + ++ R  RK SCYIMQD+ L   
Sbjct: 166 MGPSGAGKSTLMNVLAGY----KTSHLNGSVLIN-GKDRNLRRFRKMSCYIMQDDRLLPH 220

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV E++TV+A+LKLG   S  AK+  ++ I ++L +S   NT T  LSGGQ+KRLSI L
Sbjct: 221 LTVYETMTVSANLKLGKDISATAKKIVIEEIIETLGLSDASNTQTHCLSGGQRKRLSIGL 280

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD       + LL+ ++  G  IICT+HQPSA L  M D+LY+
Sbjct: 281 ELVNNPPVMFFDEPTSGLDSSTCYQCLSLLKSLSRGGRTIICTIHQPSARLFEMFDHLYL 340

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLE-----ADRMFEPCTNGKF 296
           L EG C YQG V GLVP+LS  G +CPS +NPADYV+EV+         ++     NGK 
Sbjct: 341 LAEGQCIYQGNVGGLVPFLSSVGLECPSYHNPADYVMEVACGEHGECVHKLVMAVNNGKC 400

Query: 297 FNANSSHNTKTVLKTI-----------EEKGLSS-------KEFYSVLSTEIP------- 331
            N     +T   ++T+           E K  ++       K+  S     IP       
Sbjct: 401 ANYQHYQSTINAVQTVSNDIAKESPQQETKSETALIPNGVAKQPNSGTVINIPISCTTSL 460

Query: 332 ------------YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
                       +P +  +QF ILLKR  +   RD  LT+VRL  H+I+G  +G +Y  I
Sbjct: 461 LDSAESIEQKVGFPTNSWTQFWILLKRIFLSQIRDMTLTRVRLISHIIVGFLIGAIYYDI 520

Query: 380 GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMV 439
           G+DA+RV +N   +FF+ MFLMFTA+   I+T+P+E  +  REH N W+S+KAYYLA  +
Sbjct: 521 GNDASRVMSNAGCVFFTVMFLMFTAMMPTILTFPIEMAVFVREHLNYWYSVKAYYLARTL 580

Query: 440 ADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNG 499
           AD+P Q++ ++ Y + VYF++ QPLE +RF M+L IC+   L SQ +G+++G  + V+ G
Sbjct: 581 ADVPFQIVYSIAYVIIVYFMTSQPLETNRFMMYLTICILTALVSQSIGLVIGSAMSVETG 640

Query: 500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE 559
           V  GP++ +P  +FSG+FV     P   KFL  +S++++S EG ++SVYGY+R +LKC +
Sbjct: 641 VFIGPVSSVPIVLFSGFFVNFDAIPKYLKFLSYVSYVRYSFEGTMISVYGYNRAKLKCSD 700

Query: 560 EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
            YCHFKSP KFL+ + M+N  +  D   L    + +++ +Y VL  ++
Sbjct: 701 AYCHFKSPTKFLEEMSMQNAVFWQDAVALTGFLLTLRVIAYFVLRLKL 748

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417922|ref|XP_003491646.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Bombus impatiens]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/627 (42%), Positives = 389/627 (62%), Gaps = 42/627 (6%)

Query: 7   ELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSG 66
           +L D++KS      L+F+DI+Y A  +     S K  ++LK++SG F + EL+ I+G SG
Sbjct: 32  DLMDIQKS----IFLVFEDITYCARPW---ILSGKKTELLKNLSGEFRAGELTAIMGLSG 84

Query: 67  SGKTKLLDILAGYRRPKKTE---TNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT 123
           +GK+ L+D+L G+     T     NS    +NE R    R+L     YIMQ++ LQ LLT
Sbjct: 85  AGKSTLMDVLTGFTTTGVTGNIMVNSKARNLNEFR----RLL----AYIMQNDNLQPLLT 136

Query: 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
           V+E++ VAA LKL    S + K+ K+D I  ++S+ TC++T T  LSGG++KRL+IALEL
Sbjct: 137 VQEAMNVAADLKLTT--SPQQKKQKIDQILVTMSLDTCRHTRTGKLSGGERKRLAIALEL 194

Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243
           +++P I+FLDEPT+GLD + +   + LL+ +A  G  +IC++HQPSASLLNM D+LYV+ 
Sbjct: 195 INSPPILFLDEPTSGLDSVTSKYCITLLKQLAKAGQTVICSIHQPSASLLNMIDHLYVVA 254

Query: 244 EGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEAD------RMFEPCTNGKFF 297
           +G C Y G+   LVPYLS  G QCP++YNPADY++E+    D      +M     NGK  
Sbjct: 255 DGNCVYSGSTQNLVPYLSSLGLQCPTHYNPADYLMEIC-NGDYGRYLPQMVNAIENGKNN 313

Query: 298 NANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYP-----------ADC----LSQFCI 342
              S  N   V    E   L+    +  L    P             A C      Q  I
Sbjct: 314 AWRSISNVTNVNHQEEVIALNVTASFQALRQRSPMEIQHVYGKHKAGAGCAIGFWKQLFI 373

Query: 343 LLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMF 402
           LLKR  I+  RD+ LT  RLS+H +I   +G++Y  IG DA  V +N +LLFF+ MFLMF
Sbjct: 374 LLKRNAIRLSRDKVLTFTRLSMHFVIALIVGVIYFKIGQDAVYVLDNFNLLFFNIMFLMF 433

Query: 403 TALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQ 462
           +A S+ + T+P E  IT REHFNRW+ L ++YLA  +ADIP+Q     +Y + VY++S Q
Sbjct: 434 SAFSATVTTFPSELPITMREHFNRWYKLHSFYLANKLADIPIQFTAISLYILIVYYMSDQ 493

Query: 463 PLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRD 522
            LEL RF ++ L+C  +++ +Q  G+LVG  + V++G+IFGPL +LP+ IFSG+FV  RD
Sbjct: 494 LLELQRFCLYTLMCFAVSMVAQTFGLLVGTGMKVQHGMIFGPLMILPFLIFSGFFVQFRD 553

Query: 523 SPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYS 582
           +    ++LF LSFLK+  EG+++++YGYDR +L C + YCHF  P   L+A+DMK  +Y 
Sbjct: 554 AHPYLRWLFHLSFLKYGFEGVMIAIYGYDRPKLSCSDVYCHFAIPETLLNAVDMKQANYW 613

Query: 583 YDLFFLIVSYILVKIASYLVLYFQINR 609
           + L  L+  YI + I +Y +L +++ +
Sbjct: 614 FCLIVLVALYIALDIGTYTLLKYKLEK 640

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728245|ref|XP_003402438.1| PREDICTED: ATP-binding cassette sub-family G member 1-like [Bombus terrestris]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/648 (39%), Positives = 385/648 (59%), Gaps = 53/648 (8%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
           K     L  L K P    ++ F++++YS        Y    K ILK ++G F S EL+ I
Sbjct: 98  KRPAVTLTHLPKRPP--VDVEFKNLAYSVSEGRKRGY----KTILKCVNGKFQSGELTAI 151

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           +GPSG+GK+ L+++LAGY    KT   SG + IN  + ++ R  RK SCYIMQD+ L   
Sbjct: 152 MGPSGAGKSTLMNVLAGY----KTSHLSGSVLIN-GKDRNLRRFRKMSCYIMQDDRLLPH 206

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV E++TV+A+LKLG   S + K   ++ I ++L +S   NT T  LSGGQ+KRLSIAL
Sbjct: 207 LTVYETMTVSANLKLGKDISAREKRVVIEEIIETLGLSDASNTQTHCLSGGQRKRLSIAL 266

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD       + LL+ ++  G  IICT+HQPSA L  M D+LY+
Sbjct: 267 ELVNNPPVMFFDEPTSGLDSSTCYQCLSLLKSLSRGGRTIICTIHQPSARLFEMFDHLYL 326

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLE-----ADRMFEPCTNGKF 296
           L EG C YQG V GLVP+LS  G +CPS +NPADYV+EV+         ++     NG+ 
Sbjct: 327 LAEGQCIYQGNVGGLVPFLSSMGLECPSYHNPADYVMEVACGEHGECVHKLVMAVNNGRC 386

Query: 297 FNANSSHNTKTVLKTIEE-------------------KGLSSK----------------- 320
            N      T   ++T+                      G++ +                 
Sbjct: 387 ANYQQHQATINAVQTVSNDIAKESPQQETKSESALIPNGVTKQPNGGTVINIPISCTTSL 446

Query: 321 -EFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
            +    +  ++ +P +  +QF ILLKR  +   RD  LT+VRL  H+I+G  +G +Y  I
Sbjct: 447 LDSAESIEQKVGFPTNSCTQFWILLKRIFLSQIRDMTLTRVRLISHIIVGFLIGAIYYDI 506

Query: 380 GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMV 439
           G++A++V +N   +FF+ MFLMFTA+   I+T+P E  +  REH N W+S+KAYYLA  +
Sbjct: 507 GNEASKVMSNAGCVFFTVMFLMFTAMMPTILTFPTEMAVFVREHLNYWYSVKAYYLARTL 566

Query: 440 ADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNG 499
           AD+P Q++ ++ Y + VYF++ QPLE +RF M+L IC+   L SQ +G+++G  + V++G
Sbjct: 567 ADVPFQIVYSIAYVIIVYFMTSQPLETNRFMMYLTICILTALVSQSIGLVIGAAMSVESG 626

Query: 500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE 559
           V  GP++ +P  +FSG+FV     P   KFL  +S++++S EG ++SVYGY+R +LKC +
Sbjct: 627 VFIGPVSSVPIILFSGFFVNFDAIPKYLKFLSYVSYVRYSFEGAMISVYGYNRAKLKCSD 686

Query: 560 EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
            YCHFKSP KFL+ + M+N  +  D   L    + +++ +Y VL  ++
Sbjct: 687 AYCHFKSPTKFLEEMSMQNAVFWLDAVALAGFLLTLRVIAYFVLRLKL 734

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403084|ref|XP_003486695.1| PREDICTED: ATP-binding cassette sub-family G member 1-like [Bombus impatiens]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/648 (40%), Positives = 385/648 (59%), Gaps = 53/648 (8%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
           K     L  L K P    ++ F++++YS        Y    K ILK ++G F S EL+ I
Sbjct: 100 KRPAVTLTHLPKRPP--VDVEFKNLAYSVSEGRKRGY----KTILKCVNGKFQSGELTAI 153

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           +GPSG+GK+ L+++LAGY    KT   SG + IN  + ++ R  RK SCYIMQD+ L   
Sbjct: 154 MGPSGAGKSTLMNVLAGY----KTSHLSGSVLIN-GKDRNLRRFRKMSCYIMQDDRLLPH 208

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           LTV E++TV+A+LKLG   S + K   ++ I ++L +S   NT T  LSGGQ+KRLSIAL
Sbjct: 209 LTVYETMTVSANLKLGKDISAREKRVVIEEIIETLGLSDASNTQTHCLSGGQRKRLSIAL 268

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
           EL++NP ++F DEPT+GLD       + LL+ ++  G  IICT+HQPSA L  M D+LY+
Sbjct: 269 ELVNNPPVMFFDEPTSGLDSSTCYQCLSLLKSLSRGGRTIICTIHQPSARLFEMFDHLYL 328

Query: 242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLE-----ADRMFEPCTNGKF 296
           L EG C YQG V GLVP+LS  G +CPS +NPADYV+EV+         ++     NG+ 
Sbjct: 329 LAEGQCIYQGNVGGLVPFLSSMGLECPSYHNPADYVMEVACGEHGECVHKLVMAVNNGRC 388

Query: 297 FNANSSHNTKTVLKTI-----------EEKGLSS-------KEFYSVLSTEIP------- 331
            N      T   ++T+           E K  S+       K+        IP       
Sbjct: 389 ANYQQHQATINAVQTVSNDIAKESPQQETKSESALIPNGVTKQPNGGTVINIPISCTTSL 448

Query: 332 ------------YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
                       +P +  +QF ILLKR  +   RD  LT+VRL  H+I+G  +G +Y  I
Sbjct: 449 LDSAESIEQKVGFPTNSCTQFWILLKRIFLSQIRDMTLTRVRLISHIIVGFLIGAIYYDI 508

Query: 380 GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMV 439
           G++A++V +N   +FF+ MFLMFTA+   I+T+P E  +  REH N W+S+KAYYLA  +
Sbjct: 509 GNEASKVMSNAGCVFFTVMFLMFTAMMPTILTFPTEMAVFVREHLNYWYSVKAYYLARTL 568

Query: 440 ADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNG 499
           AD+P Q++ ++ Y + VYF++ QPLE +RF M+L IC+   L SQ +G+++G  + V++G
Sbjct: 569 ADVPFQIVYSIAYVIIVYFMTSQPLETNRFMMYLTICILTALVSQSIGLVIGAAMSVESG 628

Query: 500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE 559
           V  GP++ +P  +FSG+FV     P   KFL  +S++++S EG ++SVYGY+R +LKC +
Sbjct: 629 VFIGPVSSVPIILFSGFFVNFDAIPKYLKFLSYVSYVRYSFEGAMISVYGYNRAKLKCSD 688

Query: 560 EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
            YCHFKSP KFL+ + M+N  +  D   L    + +++ +Y VL  ++
Sbjct: 689 AYCHFKSPTKFLEEMSMQNAVFWLDAVALAGFLLTLRVIAYFVLRLKL 736

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.419	0.308	0.503	3.3e-117
FB|FBgn0025683	699	CG3164 [Drosophila melanogaste	0.429	0.376	0.478	4.2e-115
UNIPROTKB|P45844	678	ABCG1 "ATP-binding cassette su	0.429	0.387	0.475	4.9e-110
UNIPROTKB|F1PPV0	689	ABCG1 "Uncharacterized protein	0.429	0.381	0.475	1.7e-109
FB|FBgn0031516	808	CG9663 [Drosophila melanogaste	0.449	0.340	0.397	2.1e-109
UNIPROTKB|E1BDU6	665	ABCG1 "Uncharacterized protein	0.975	0.897	0.390	1.1e-108
UNIPROTKB|E7ERE5	786	ABCG1 "ATP-binding cassette su	0.377	0.293	0.508	3.9e-108
UNIPROTKB|E9PGV9	824	ABCG1 "ATP-binding cassette su	0.377	0.280	0.508	5.4e-108
UNIPROTKB|J9P4X7	717	ABCG1 "Uncharacterized protein	0.964	0.822	0.385	4.4e-107
MGI|MGI:107704	666	Abcg1 "ATP-binding cassette, s	0.957	0.879	0.383	5.7e-107

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 635 (228.6 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
 Identities = 134/266 (50%), Positives = 181/266 (68%)

Query:    16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI 75
             R   ++ F DISYS    D+H    K+  ILK +SG F + E++ I+GPSG+GK+ L++I
Sbjct:   140 RPPVDIEFCDISYSVT--DSHRRGFKT--ILKSVSGKFRNGEITAIMGPSGAGKSTLMNI 195

Query:    76 LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135
             LAGY    KT   SG + IN ++ ++ R  RK SCYIMQD++L   LTV E++ VAA+LK
Sbjct:   196 LAGY----KTAQLSGSVLIN-SKERNLRRFRKLSCYIMQDDVLIANLTVREAMMVAANLK 250

Query:   136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195
             LG      AK   V+ I +++ +    NTLT +LSGGQ+KRLSIALEL++NP ++F DEP
Sbjct:   251 LGKNMISYAKVVVVEEILETIGLKESVNTLTCNLSGGQRKRLSIALELVNNPPVMFFDEP 310

Query:   196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255
             T+GLD      L+ LLR +A  G  I+CT+HQPSA L    D+LY+L +G C Y+G V G
Sbjct:   311 TSGLDSSTCFQLISLLRSLARGGRTIVCTIHQPSARLFEKFDHLYLLAQGQCVYEGRVKG 370

Query:   256 LVPYLSDFGYQCPSNYNPADYVIEVS 281
             LVPYLS  GY+CPS +NPADYV+EV+
Sbjct:   371 LVPYLSSLGYECPSYHNPADYVLEVA 396

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0025683 CG3164 [Drosophila melanogaster (taxid:7227)]

 Score = 594 (214.2 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
 Identities = 131/274 (47%), Positives = 175/274 (63%)

Query:     8 LQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGS 67
             LQ L K P    +L F +++Y             +K ILK +SG   S EL+ I+GPSG+
Sbjct:    36 LQHLPKRPA--VDLAFHNLTYRV----KEGNRSNAKTILKGVSGRLRSGELTAIMGPSGA 89

Query:    68 GKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEES 127
             GK+ LL+IL+GY    KT +  G + +N    ++    RK S YIMQDN L   LTV+E+
Sbjct:    90 GKSTLLNILSGY----KTSSIEGSVTMNGAE-RNLSAFRKLSAYIMQDNQLHGNLTVQEA 144

Query:   128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
             +TVA +LKL  ++S+  K S +D I  +LS+S  + T+T++LSGGQKKRLSIALEL+SNP
Sbjct:   145 MTVATNLKLSKKFSKPEKHSMIDDILLTLSLSEHRYTMTRNLSGGQKKRLSIALELVSNP 204

Query:   188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247
              I+F DEPT+GLD       + LL+ +A  G  +ICT+HQPSA L  M D LY L +G C
Sbjct:   205 PIMFFDEPTSGLDSSTCFQCIHLLKMLAAGGRTVICTIHQPSARLFEMFDQLYTLADGQC 264

Query:   248 TYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
              YQG+   LVP+LS    +CPS +NPA YVIEVS
Sbjct:   265 VYQGSTKQLVPFLSTLNLECPSYHNPASYVIEVS 298

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P45844 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
 Identities = 133/280 (47%), Positives = 180/280 (64%)

Query:     7 ELQDLKKSPRKH-FNLLFQDISYSAL---YYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
             E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct:    62 EAQRFSSLPRRAAVNIEFRDLSYSVPEGPWWRKKGY----KTLLKGISGKFNSGELVAIM 117

Query:    63 GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
             GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct:   118 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RDLRCFRKVSCYIMQDDMLLPH 171

Query:   122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
             LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C NT T  LSGGQ+KRL+IAL
Sbjct:   172 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIAL 229

Query:   182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
             EL++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L  + D LYV
Sbjct:   230 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYV 289

Query:   242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
             L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+
Sbjct:   290 LSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVA 329

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0010033 "response to organic substance" evidence=IDA

GO:0009720 "detection of hormone stimulus" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0046983 "protein dimerization activity" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0034041 "sterol-transporting ATPase activity" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0033993 "response to lipid" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010872 "regulation of cholesterol esterification" evidence=ISS

GO:0034374 "low-density lipoprotein particle remodeling" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 599 (215.9 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
 Identities = 133/280 (47%), Positives = 180/280 (64%)

Query:     7 ELQDLKKSPRKH-FNLLFQDISYSAL---YYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
             E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct:    73 EAQRFSSLPRRAAVNIEFKDLSYSVPEGPWWRKKGY----KTLLKGISGKFNSGELVAIM 128

Query:    63 GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
             GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct:   129 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RDLRCFRKVSCYIMQDDMLLPH 182

Query:   122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
             LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C NT T  LSGGQ+KRL+IAL
Sbjct:   183 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIAL 240

Query:   182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
             EL++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L  + D LYV
Sbjct:   241 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYV 300

Query:   242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
             L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+
Sbjct:   301 LSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVA 340

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0031516 CG9663 [Drosophila melanogaster (taxid:7227)]

 Score = 565 (203.9 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
 Identities = 110/277 (39%), Positives = 167/277 (60%)

Query:   332 YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNXX 391
             Y      Q  ILL RT +  +RD  LT +R ++HLI G  +G +Y GIG+DAA+  N   
Sbjct:   529 YATPFYRQLSILLVRTFLLIWRDSSLTTMRFAIHLITGILIGTLYFGIGNDAAQTLNIFR 588

Query:   392 XXXXXXXXXXXXALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVI 451
                         A S +++ +PLEF I  REHFNRW+SL+AYY+A  +AD+P+Q++C+ +
Sbjct:   589 YLFYTIMFIMYCAFSGILVKFPLEFPIVSREHFNRWYSLRAYYVAITLADLPIQIICSAL 648

Query:   452 YCVTVYFISKQPLELDRFAMFLLICVFLT-LYSQGMGVLVGMILDVKNGVIFGPLTLLPW 510
             + V  Y +++QPLEL RF MF LI VF+T L SQ +G+ VG  L +K G I GP  + P+
Sbjct:   649 FIVPTYLMTQQPLELWRFGMFFLI-VFVTALVSQSIGLAVGAALSLKLGSILGPFFICPF 707

Query:   511 TIFSGYFVLQRDSPDCXXXXXXXXXXXXXXEGILLSVYGYDRDQLKCYEEYCHFKSPAKF 570
               FSG+F++++D+P                EG  ++++GYDR+ L C E YCH + P   
Sbjct:   708 LQFSGFFLMEKDAPVFLRWMFDISFLKYSLEGATMAIFGYDREPLACNELYCHLRHPQFI 767

Query:   571 LDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI 607
             L +LDM NG+Y+  L FL    + ++I ++ ++ F++
Sbjct:   768 LKSLDMANGNYTLALIFLFGVLVFLRILAFYIMSFRL 804

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BDU6 ABCG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 245/628 (39%), Positives = 356/628 (56%)

Query:     1 MKSEE---AELQDLKKSPRKH-FNLLFQDISYSAL---YYDTHSYSIKSKDILKDISGVF 53
             +K E+    E Q L   PR+   N+ F+D+SYS     ++    Y    K +LK ISG F
Sbjct:    52 LKKEDNNLTEAQRLSSLPRRAAVNIEFKDLSYSVSEGPWWRKKGY----KTLLKGISGKF 107

Query:    54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYI 112
              S EL  I+GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYI
Sbjct:   108 NSGELVAIMGPSGAGKSTLMNILAGYR-----ETGMKGEVLINGLP-RDLRCFRKVSCYI 161

Query:   113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
             MQD+LL   LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C NT T  LSGG
Sbjct:   162 MQDDLLLPHLTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSCANTRTGSLSGG 219

Query:   173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
             Q+KRL+IALEL++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L
Sbjct:   220 QRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKL 279

Query:   233 LNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-----EADRM 287
               + D LYVL++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+      +  R+
Sbjct:   280 FELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNGRL 339

Query:   288 FEPCTNGKFFN--ANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLK 345
                   GK  +           V   I  +   S+E  + +     + A CL+QFCIL K
Sbjct:   340 VRAVWEGKCDSDCRREPGGDAEVNPFIWHR--PSEEDSTSMEGCHSFSASCLTQFCILFK 397

Query:   346 RTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNXXXXXXXXXXXXXXAL 405
             RT +   RD  LT +R++ H+ IG  +G++Y GIG++A +V +N              AL
Sbjct:   398 RTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAAL 457

Query:   406 SSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLE 465
                ++T+PLE  +  REH N W+SLKAYYLA  +AD+P Q++  V YC  VY+++ QP +
Sbjct:   458 MPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSD 517

Query:   466 LDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSP 524
               RF +F  +    +L +Q +G+L+G     ++     GP+T +P  +FSG+FV     P
Sbjct:   518 AVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIP 577

Query:   525 DCXXXXXXXXXXXXXXEGILLSVYGYDRDQLKCY-EEYCHFKSPAKFLDALDMKNGDYSY 583
                             EG++LS+YG DR+ L C   E CHF+     L  LD++N     
Sbjct:   578 TYLQWMSYVSYVRYGFEGVILSIYGLDREDLHCNTNETCHFQKSEAILRELDVENAKLYL 637

Query:   584 DLFFLIVSYILVKIASYLVLYFQINRNK 611
             D   L + +I +++ +YLVL ++I   +
Sbjct:   638 DFIVLGIFFISLRLIAYLVLRYKIRAER 665

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E7ERE5 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 579 (208.9 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
 Identities = 122/240 (50%), Positives = 163/240 (67%)

Query:    43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQD 101
             K +LK ISG F S EL  I+GPSG+GK+ L++ILAGYR     ET   G + IN    +D
Sbjct:   206 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RD 259

Query:   102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
              R  RK SCYIMQD++L   LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C
Sbjct:   260 LRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSC 317

Query:   162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
              NT T  LSGGQ+KRL+IALEL++NP ++F DEPT+GLD  +   +V L++ +A  G  I
Sbjct:   318 ANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSI 377

Query:   222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
             ICT+HQPSA L  + D LYVL++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+
Sbjct:   378 ICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVA 437

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PGV9 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 579 (208.9 bits), Expect = 5.4e-108, Sum P(2) = 5.4e-108
 Identities = 122/240 (50%), Positives = 163/240 (67%)

Query:    43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQD 101
             K +LK ISG F S EL  I+GPSG+GK+ L++ILAGYR     ET   G + IN    +D
Sbjct:   244 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RD 297

Query:   102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
              R  RK SCYIMQD++L   LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C
Sbjct:   298 LRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSC 355

Query:   162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
              NT T  LSGGQ+KRL+IALEL++NP ++F DEPT+GLD  +   +V L++ +A  G  I
Sbjct:   356 ANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSI 415

Query:   222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVS 281
             ICT+HQPSA L  + D LYVL++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+
Sbjct:   416 ICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPADFVMEVA 475

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P4X7 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 239/620 (38%), Positives = 351/620 (56%)

Query:     7 ELQDLKKSPRKH-FNLLFQDISYSAL---YYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
             E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct:   113 EAQRFSSLPRRAAVNIEFKDLSYSVPEGPWWRKKGY----KTLLKGISGKFNSGELVAIM 168

Query:    63 GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
             GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct:   169 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGLP-RDLRCFRKVSCYIMQDDMLLPH 222

Query:   122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
             LTV+E++ V+AHLKL  Q   + +   V  I  +L + +C NT T  LSGGQ+KRL+IAL
Sbjct:   223 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLSCANTRTGSLSGGQRKRLAIAL 280

Query:   182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
             EL++NP ++F DEPT+GLD  +   +V L++ +A  G  IICT+HQPSA L  + D LYV
Sbjct:   281 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYV 340

Query:   242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-----EADRMFEPCTNGKF 296
             L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+      +  R+      G  
Sbjct:   341 LSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGM- 399

Query:   297 FNANSSHNTKTVLKTIEEKGL---SSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFR 353
                +S H  +          L    S+E  + +     + A CL+QFCIL KRT +   R
Sbjct:   400 --CDSEHRREPGGDAEVNPFLWHRPSEEDSTSMEGCHSFSASCLTQFCILFKRTFLSIMR 457

Query:   354 DRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNXXXXXXXXXXXXXXALSSMIITYP 413
             D  LT +R++ H+ IG  +G++Y GIG++A +V +N              AL   ++T+P
Sbjct:   458 DSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFP 517

Query:   414 LEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFL 473
             LE  +  REH N W+SLKAYYLA  +AD+P Q++  V YC  VY+++ QP +  RF +F 
Sbjct:   518 LEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFA 577

Query:   474 LICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCXXXXXX 532
              +    +L +Q +G+L+G     ++     GP+T +P  +FSG+FV     P        
Sbjct:   578 ALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSY 637

Query:   533 XXXXXXXXEGILLSVYGYDRDQLKC-YEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVS 591
                     EG++LS+YG DR+ L C  +E CHF+     L  LD+++     D   L + 
Sbjct:   638 ISYVRYGFEGVILSIYGLDREDLHCGIDETCHFQKSEAILRELDVEDAKLYLDFIVLGIF 697

Query:   592 YILVKIASYLVLYFQINRNK 611
             +I +++ +Y VL ++I   +
Sbjct:   698 FISLRLIAYFVLRYKIRAER 717

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:107704 Abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Mus musculus (taxid:10090)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 239/624 (38%), Positives = 350/624 (56%)

Query:     7 ELQDLKKSPRKH-FNLLFQDISYSAL---YYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
             E Q     PR+   N+ F+D+SYS     ++    Y    K +LK ISG F S EL  I+
Sbjct:    62 EAQRFSSLPRRAAVNIEFKDLSYSVPEGPWWKKKGY----KTLLKGISGKFNSGELVAIM 117

Query:    63 GPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
             GPSG+GK+ L++ILAGYR     ET   G + IN    +D R  RK SCYIMQD++L   
Sbjct:   118 GPSGAGKSTLMNILAGYR-----ETGMKGAVLINGMP-RDLRCFRKVSCYIMQDDMLLPH 171

Query:   122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
             LTV+E++ V+AHLKL  Q   + +   V  I  +L +  C NT T  LSGGQ+KRL+IAL
Sbjct:   172 LTVQEAMMVSAHLKL--QEKDEGRREMVKEILTALGLLPCANTRTGSLSGGQRKRLAIAL 229

Query:   182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV 241
             EL++NP ++F DEPT+GLD  +   +V L++ +A  G  I+CT+HQPSA L  + D LYV
Sbjct:   230 ELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKLFELFDQLYV 289

Query:   242 LTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-----EADRMFEPCTNG-- 294
             L++G C Y+G V  LVPYL D G  CP+ +NPAD+V+EV+      +  R+      G  
Sbjct:   290 LSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMC 349

Query:   295 -----KFFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLI 349
                  +    ++  N     +  EE   S +  +S       + A CL+QFCIL KRT +
Sbjct:   350 DADYKRDLGGDTDVNPFLWHRPAEEDSASMEGCHS-------FSASCLTQFCILFKRTFL 402

Query:   350 KCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNXXXXXXXXXXXXXXALSSMI 409
                RD  LT +R++ H+ IG  +G++Y GIG++A +V +N              AL   +
Sbjct:   403 SIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTV 462

Query:   410 ITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRF 469
             +T+PLE  +  REH N W+SLKAYYLA  +AD+P Q++  V YC  VY+++ QP +  RF
Sbjct:   463 LTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRF 522

Query:   470 AMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCXX 528
              +F  +    +L +Q +G+L+G     ++     GP+T +P  +FSG+FV     P    
Sbjct:   523 VLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPAYLQ 582

Query:   529 XXXXXXXXXXXXEGILLSVYGYDRDQLKC-YEEYCHFKSPAKFLDALDMKNGDYSYDLFF 587
                         EG++LS+YG DR+ L C   E CHF+     L  LD++N     D   
Sbjct:   583 WMSYISYVRYGFEGVILSIYGLDREDLHCDIAETCHFQKSEAILRELDVENAKLYLDFIV 642

Query:   588 LIVSYILVKIASYLVLYFQINRNK 611
             L + +I +++ +Y VL ++I   +
Sbjct:   643 LGIFFISLRLIAYFVLRYKIRAER 666

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0009897 "external side of plasma membrane" evidence=ISO;IDA

GO:0010033 "response to organic substance" evidence=ISO

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IC

GO:0010872 "regulation of cholesterol esterification" evidence=IMP

GO:0010875 "positive regulation of cholesterol efflux" evidence=IDA

GO:0010888 "negative regulation of lipid storage" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IMP

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0033993 "response to lipid" evidence=ISO

GO:0034041 "sterol-transporting ATPase activity" evidence=ISO

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IMP

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IMP

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0034437 "glycoprotein transporter activity" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042987 "amyloid precursor protein catabolic process" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055037 "recycling endosome" evidence=IDA

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86HQ2	ABCG8_DICDI	No assigned EC number	0.2557	0.9068	0.8865	yes	N/A
Q9H172	ABCG4_HUMAN	No assigned EC number	0.3837	0.9656	0.9148	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	612
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-133
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-65
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-63
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-53
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-52
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	7e-43
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-40
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	7e-39
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-38
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-35
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	1e-34
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-33
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-32
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	7e-32
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-31
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-30
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-29
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	7e-29
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-28
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	7e-28
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-27
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-27
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-27
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	6e-27
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	8e-27
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-26
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-25
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	7e-25
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	9e-25
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-24
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	7e-24
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-23
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-23
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-23
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-23
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	4e-23
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-23
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-22
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-22
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-22
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-22
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-22
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	7e-22
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	7e-22
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	7e-22
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	9e-22
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-21
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-21
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-21
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	4e-21
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-21
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-21
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-21
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	6e-21
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	9e-21
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	9e-21
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-20
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-20
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-20
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-20
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-20
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	6e-20
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-20
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-19
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-19
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	3e-19
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-19
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-19
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-19
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-19
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	4e-19
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-19
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	8e-19
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	9e-19
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-18
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-18
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-18
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-18
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-18
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-18
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	4e-18
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-18
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	5e-18
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	7e-18
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	7e-18
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	7e-18
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	7e-18
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	8e-18
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-17
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-17
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-17
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-17
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	5e-17
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	6e-17
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-17
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-16
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-16
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-16
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-16
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-16
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-16
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-16
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-16
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-16
COG4987	573	COG4987, CydC, ABC-type transport system involved	5e-16
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-16
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	5e-16
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	5e-16
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	6e-16
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	6e-16
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	9e-16
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	1e-15
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-15
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	3e-15
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-15
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-15
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-15
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	5e-15
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	5e-15
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	7e-15
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	9e-15
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-14
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-14
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-14
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-14
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-14
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-14
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-14
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-14
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-14
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	4e-14
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	6e-14
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	7e-14
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-13
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-13
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-13
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-13
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-13
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-13
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-13
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-13
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-13
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-13
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	4e-13
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	6e-13
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-13
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-13
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	8e-13
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	8e-13
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	8e-13
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	9e-13
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-12
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-12
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-12
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-12
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	1e-12
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	1e-12
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	3e-12
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-12
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	4e-12
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	5e-12
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	6e-12
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	8e-12
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	8e-12
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-11
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-11
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-11
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-11
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-11
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	1e-11
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-11
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-11
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-11
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-11
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	3e-11
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	3e-11
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-11
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	3e-11
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	4e-11
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	4e-11
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	4e-11
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	4e-11
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	4e-11
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-11
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	6e-11
COG4598	256	COG4598, HisP, ABC-type histidine transport system	6e-11
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	7e-11
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-11
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	7e-11
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	7e-11
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	9e-11
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	9e-11
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	1e-10
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-10
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-10
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-10
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-10
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-10
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-10
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-10
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	3e-10
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-10
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	3e-10
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-10
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	3e-10
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-10
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	4e-10
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	4e-10
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	4e-10
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	4e-10
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	6e-10
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	6e-10
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	7e-10
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-10
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	9e-10
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-09
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-09
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-09
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-09
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	4e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-09
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-09
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	4e-09
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-09
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-09
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	6e-09
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-09
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	7e-09
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	7e-09
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	7e-09
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	8e-09
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	8e-09
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	8e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	8e-09
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	9e-09
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-08
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-08
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	1e-08
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	1e-08
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-08
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-08
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-08
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-08
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	2e-08
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	2e-08
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-08
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-08
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	4e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	6e-08
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	6e-08
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	7e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	7e-08
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	8e-08
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	8e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-07
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	1e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	1e-07
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-07
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-07
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-07
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-07
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	2e-07
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	3e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-07
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	6e-07
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-07
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	6e-07
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	8e-07
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	8e-07
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	8e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	8e-07
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	9e-07
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	1e-06
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-06
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-06
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	1e-06
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-06
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-06
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	2e-06
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-06
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	2e-06
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-06
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-06
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-06
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-06
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	3e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	3e-06
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	4e-06
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-06
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	5e-06
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	5e-06
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	7e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-06
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	8e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	9e-06
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	9e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	9e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-05
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	2e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	3e-05
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	5e-05
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	6e-05
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	6e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	7e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	8e-05
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	9e-05
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-04
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	1e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-04
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	2e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	2e-04
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	2e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	2e-04
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	5e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	5e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	7e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	8e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	8e-04
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	0.001
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.001
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.002
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.002
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.002
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	0.003
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.003
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.003
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.004
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  401 bits (1033), Expect = e-133
 Identities = 179/586 (30%), Positives = 291/586 (49%), Gaps = 23/586 (3%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K +LK++SGV    EL  ++G SG+GKT L++ LA  R PK  +  SG + +N   + D 
Sbjct: 38  KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF-RSPKGVKG-SGSVLLNGMPI-DA 94

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           + +R  S Y+ QD+L    LTV E L   AHL++  + ++K K  +VD +  +L +  C 
Sbjct: 95  KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA 154

Query: 163 NTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
           NT        K LSGG++KRL+ A ELL++P ++F DEPT+GLD   A ++V++L+ +A 
Sbjct: 155 NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADY 276
           +G  IICT+HQPS+ L  + D + ++ EG   Y G+    VP+ SD G+ CP NYNPAD+
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274

Query: 277 VIEVSLEADRMFEPC--TNGKF--FNANSSHNTKTVLKTIEEKGLSSK-EFYSVLSTEIP 331
            ++V                K     A S      ++ T    G +      S     I 
Sbjct: 275 YVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334

Query: 332 YPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLS 391
           Y A   +QF  LLKR+ +   RD  L KVRL   ++    +G++Y G G     V N   
Sbjct: 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNING 394

Query: 392 LLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVI 451
            LF     + F  +  +I  +  E  +  RE  +  + + AY+LA  +A++P+ ++   +
Sbjct: 395 ALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPAL 454

Query: 452 YCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL-DVKNGVIFGPLTLLPW 510
           +    Y++         F  FL +   +   +   G L+          +  GP  ++P+
Sbjct: 455 FTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPF 514

Query: 511 TIFSGYFVLQRDS-PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY----EEYCHFK 565
            +F G+F +  DS P  FK+L  LS+ ++  EG+L++ +  D D ++C        C   
Sbjct: 515 LLFGGFF-INSDSIPVYFKWLSYLSWFRYGNEGLLINQWS-DVDNIECTSANTTGPCPSS 572

Query: 566 SPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK 611
                L+ L  +N D   DL  L++     ++ +Y  L  +I R +
Sbjct: 573 GEV-ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  212 bits (543), Expect = 1e-65
 Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 40/231 (17%)

Query: 21  LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR 80
           L F++++ +       S S   K +LK++SG     EL+ I+GPSG+GK+ LL+ LAG R
Sbjct: 4   LSFRNLTVTV----KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59

Query: 81  RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
                   SG + IN   L      RK   Y+ QD++L   LTV E+L  AA L+     
Sbjct: 60  TGLGV---SGEVLINGRPLDKRS-FRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110

Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
                                       LSGG++KR+SIALEL+SNPS++FLDEPT+GLD
Sbjct: 111 ---------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143

Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
             +A  ++ LLR +A  G  IIC++HQPS+ +  + D L +L++G   Y G
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  220 bits (563), Expect = 2e-63
 Identities = 147/502 (29%), Positives = 257/502 (51%), Gaps = 32/502 (6%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINE 96
            I+ + IL  ++G+    E+  +LGPSGSGK+ LL+ LAG     + + N+  G I  N 
Sbjct: 77  QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG-----RIQGNNFTGTILANN 131

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
            +     +  K + ++ QD++L   LTV E+L   + L+L    +++ K    +S+   L
Sbjct: 132 RKPTKQIL--KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189

Query: 157 SISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
            ++ C+NT+      + +SGG++KR+SIA E+L NPS++ LDEPT+GLD   A  LV  L
Sbjct: 190 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249

Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNY 271
             +A +G  I+ ++HQPS+ +  M D + VL+EG C + G     + Y    G+      
Sbjct: 250 GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPM 309

Query: 272 NPADYVIEVS---LEADRMFE---PCTNGKFFNANSSHNTKTVLKTIEEKGLSS--KEFY 323
           NPAD++++++    + D + E   P        + ++     V   IE          F 
Sbjct: 310 NPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFV 369

Query: 324 SVLSTEIPYPAD--CLS----QFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYR 377
              ST+    +D   +S    QF ILL+R+L +   + F T +R+   +      G+M+ 
Sbjct: 370 GSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNT-LRVFQVIAAALLAGLMW- 427

Query: 378 GIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLAT 437
               D   V + L LLFF ++F       + +  +P E  I  +E  +  ++L +Y++A 
Sbjct: 428 -WHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMAR 486

Query: 438 MVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVG-MILDV 496
           +V D+P++L+   I+    Y+++    EL  F + LL+ +   L SQG+G+ +G  I+D 
Sbjct: 487 IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546

Query: 497 KNGVIFGPLTLLPWTIFSGYFV 518
           K       +T+L + +  G++V
Sbjct: 547 KKASTIVTVTMLAFVLTGGFYV 568

Length = 659

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  196 bits (499), Expect = 5e-53
 Identities = 151/639 (23%), Positives = 261/639 (40%), Gaps = 94/639 (14%)

Query: 40   IKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
            IK +   IL ++ G      L+ ++G SG+GKT LL++LA           +G I   + 
Sbjct: 771  IKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE-------RVTTGVITGGD- 822

Query: 98   RLQDHRML----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
            RL + R L    ++   Y+ Q +L     TV ESL  +A+L+     S+  K   V+ + 
Sbjct: 823  RLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVI 882

Query: 154  DSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNP-SIIFLDEPTTGLDYLNATNLV 208
              L + +  + +     + L+  Q+KRL+I +EL++ P  ++FLDEPT+GLD   A ++ 
Sbjct: 883  KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942

Query: 209  KLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTV----PGLVPYLSDF 263
            KL+R +A  G  I+CT+HQPSA L    D L +L +G  T Y G +      ++ Y    
Sbjct: 943  KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH 1002

Query: 264  G-YQCPSNYNPADYVIEVS-------LEADRMFEPCTNGKFFNANSSHNTKTVLKTIEEK 315
            G  +CP + NPA++++EV           D   E   N   + A  +      L  +E +
Sbjct: 1003 GAPKCPEDANPAEWMLEVIGAAPGAHANQD-YHEVWRNSSEYQAVKNE-----LDRLEAE 1056

Query: 316  GLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIM 375
             LS  E  +       Y A    QF ++L RT  + +R       +  L +    F+G  
Sbjct: 1057 -LSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFT 1115

Query: 376  YRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMI---ITYPLEFEITRREHFNRWFSLKA 432
            +  +G     + N +  +F +T+      +   +   +     +E+  RE  +R FS  A
Sbjct: 1116 FFKVGTSLQGLQNQMFAVFMATVLFN-PLIQQYLPPFVAQRDLYEV--RERPSRTFSWLA 1172

Query: 433  YYLATMVADIPVQLLCTVIYCVTVYF-------ISKQPLELDRFAMFLLICVFLTLYSQG 485
            +  A +  +IP  L+   I+    Y+        SK     +R  +F L+     LY   
Sbjct: 1173 FIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232

Query: 486  MGVLVGMILDV-KNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGIL 544
            +G +V        N  +   L       F G        P  + F+++ S   + ++ +L
Sbjct: 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALL 1292

Query: 545  LSVYGYDRDQLKCYE------------------------------------EYCHFKSPA 568
             +         K  E                                     +C +    
Sbjct: 1293 STGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTN 1352

Query: 569  KFLDALDMKNGDYSYDL--FFLIVSYILVKIASYLVLYF 605
             FL+ +  K   YS     F + +++I   I + +  Y+
Sbjct: 1353 DFLEPISSK---YSGRWRNFGIFIAFIFFNIIATVFFYW 1388

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  179 bits (455), Expect = 2e-52
 Identities = 79/212 (37%), Positives = 123/212 (58%), Gaps = 4/212 (1%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
           K   IL D+S    S ++  ILG SGSGKT LLD ++G  R +   T SG I  N    +
Sbjct: 18  KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEGGGTTSGQILFNGQPRK 75

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS-LSIS 159
             +  +K   Y+ QD++L   LTV E+LT  A L+L  + S   ++ +V+ +    L+++
Sbjct: 76  PDQF-QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT 134

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
                L K +SGG+++R+SIA++LL +P ++ LDEPT+GLD   A NLV  L  +A +  
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194

Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           ++I T+HQP + L  + D + +L+ G   Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  155 bits (394), Expect = 7e-43
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
             K  L  +S      E+  +LGP+G+GKT LL ILAG  +P      SG I +    + 
Sbjct: 16  GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----TSGEILVLGYDVV 70

Query: 101 DHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
                +R+   Y+ Q+  L   LTV E+L   A L      S++  E +++ + +   + 
Sbjct: 71  KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLE 127

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
              N   + LSGG K+RLSIAL LL +P ++ LDEPT+GLD  +   + +LLR++A +G 
Sbjct: 128 DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187

Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQC 267
           + I            + D + +L +G    +GT   L       G   
Sbjct: 188 VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235

Length = 293

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  157 bits (398), Expect = 4e-40
 Identities = 140/541 (25%), Positives = 254/541 (46%), Gaps = 49/541 (9%)

Query: 45   ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL----Q 100
            +L++++G F    L+ ++G SG+GKT L+D+LAG    +KT    GYIE  + R+    +
Sbjct: 895  LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKT---GGYIE-GDIRISGFPK 946

Query: 101  DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
                  + S Y  Q+++    +TV ESL  +A L+L  + S++ K   VD + + + +  
Sbjct: 947  KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN 1006

Query: 161  CKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
             K+ +        LS  Q+KRL+IA+EL++NPSIIF+DEPT+GLD   A  +++ +R+  
Sbjct: 1007 LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066

Query: 216  HQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQGT--------------VPGLVPYL 260
              G  ++CT+HQPS  +    D L ++   G   Y G               +PG VP  
Sbjct: 1067 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPG-VP-- 1123

Query: 261  SDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHN-TKTVLKTIEEKGLSS 319
                 +    YNPA +++EVS  A  +       + + ++S +   K ++K +      +
Sbjct: 1124 -----KIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA 1178

Query: 320  KEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI 379
             + Y   +T+  Y      QF   L +     +R      VR    L     +G ++  +
Sbjct: 1179 SDLY--FATQ--YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV 1234

Query: 380  G---DDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLA 436
            G    +A  +   +  ++ + +F+     S++     +E  +  RE     +S   Y +A
Sbjct: 1235 GTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294

Query: 437  TMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVL-VGMILD 495
             +V +IP  L+ T  Y + VY +        +F  F  I  F  LY    G++ V +  +
Sbjct: 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354

Query: 496  VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQL 555
             +   IF       + +FSG+F+ +   P  + + + +  +  ++ G+++S YG   D +
Sbjct: 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTI 1414

Query: 556  K 556
            K
Sbjct: 1415 K 1415

Length = 1470

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  141 bits (357), Expect = 7e-39
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 39/227 (17%)

Query: 26  ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
           +++  L Y         + +L +ISG      L+ ++G SG+GKT LLD+LAG  R K  
Sbjct: 4   LTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--R-KTA 59

Query: 86  ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
              +G I IN   L  +   ++ + Y+ Q ++    LTV E+L  +A L+          
Sbjct: 60  GVITGEILINGRPLDKN--FQRSTGYVEQQDVHSPNLTVREALRFSALLR---------- 107

Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
                                  LS  Q+KRL+I +EL + PSI+FLDEPT+GLD   A 
Sbjct: 108 ----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145

Query: 206 NLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQG 251
           N+V+ L+ +A  G  I+CT+HQPSAS+    D L +L   G   Y G
Sbjct: 146 NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  152 bits (386), Expect = 1e-38
 Identities = 124/550 (22%), Positives = 235/550 (42%), Gaps = 59/550 (10%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA----GYRRPKKTETNSGYIEINE 96
           K+ DILK + G+    EL+V+LG  GSG + LL  +A    G+    +       I   E
Sbjct: 72  KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL-GNQYSRKAKESKVDSIAD- 154
            +    +  R +  Y  + ++    LTV E+L  AA  K   N+    ++E     IAD 
Sbjct: 132 IK----KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187

Query: 155 ---SLSISTCKNT-----LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
              +  +S  +NT       + +SGG++KR+SIA   L    I   D  T GLD   A  
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247

Query: 207 LVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGY 265
            ++ L+  A+   T  +  ++Q S     + D + VL EGY  Y G       Y    G+
Sbjct: 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307

Query: 266 QCPSNYNPADYVIEVSLEADRMFEPCTNGKF------FNA---NSS-------------- 302
           +CP     AD++  ++  A+R  +P    K       F     NS               
Sbjct: 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLD 367

Query: 303 -HNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVR 361
             +     +   E  ++ +   +  S+  PY      Q    L R  ++   +   T   
Sbjct: 368 RCSESDTKEAYRESHVAKQSKRTRPSS--PYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425

Query: 362 LSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL---SSMIITYPLEFEI 418
           +  ++I+   L  ++  +  + +  ++    LFF+ +F  F++L   +SM    P    I
Sbjct: 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP----I 481

Query: 419 TRREHFNRWFSL---KAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLI 475
             +   +R ++L    A  +A+++++IP +++ +V++ + +YF+        RF  +LLI
Sbjct: 482 VEK---HRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538

Query: 476 CVFLTLYSQGMGVLVGMILD-VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLS 534
               TL    +   +G +   +   +    + LL  +I++G+ + +       K+++ ++
Sbjct: 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVN 598

Query: 535 FLKHSLEGIL 544
            L ++ E ++
Sbjct: 599 PLAYAFESLM 608

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  132 bits (336), Expect = 1e-35
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 18/217 (8%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + SY   ++  L DIS      E  +I+GP+GSGK+ LL +L G   P      SG + +
Sbjct: 6   SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-----SGEVLV 60

Query: 95  NETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---NQYSRKAKESKV 149
           +   L     + LR++   + Q+   Q         TV   +  G        +  E +V
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQ-FFG----PTVEEEVAFGLENLGLPEEEIEERV 115

Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
           +   + + +   ++     LSGGQK+R++IA  L  +P I+ LDEPT GLD      L++
Sbjct: 116 EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175

Query: 210 LLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEG 245
           LL+ +  +G T+II T H     LL +AD + VL +G
Sbjct: 176 LLKKLKAEGKTIIIVT-HDLDL-LLELADRVIVLEDG 210

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  130 bits (329), Expect = 1e-34
 Identities = 58/212 (27%), Positives = 111/212 (52%), Gaps = 5/212 (2%)

Query: 339 QFCILLKRTLIKCFRDRFLTKV-RLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFST 397
           Q   LLKR  ++ +RD  L  + RL   L++    G ++  +      + N   LLFFS 
Sbjct: 2   QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGL-NRPGLLFFSI 60

Query: 398 MFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVY 457
           +F  F++L+ +   +  E  +  RE  +  +S  AY LA ++ ++P+ LL  +I+ + VY
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 458 FISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMIL-DVKNGVIFGPLTLLPWTIFSGY 516
           F+    L + RF +FLL+ +   L + G+G+ +  +    ++    GPL LLP  + SG+
Sbjct: 121 FMV--GLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 517 FVLQRDSPDCFKFLFKLSFLKHSLEGILLSVY 548
           F+     P   ++++ L+ L +++E +  + +
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  126 bits (318), Expect = 4e-33
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 11/223 (4%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y   +K  + D+S      E+  +LG +G+GKT  L +L G  RP      SG   I
Sbjct: 7   TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----TSGTAYI 61

Query: 95  NETRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           N   ++  R   R+   Y  Q + L + LTV E L   A LK G    +   + +V+ + 
Sbjct: 62  NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK-G--LPKSEIKEEVELLL 118

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
             L ++   N   + LSGG K++LS+A+ L+  PS++ LDEPT+GLD  +   +  L+ +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178

Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
           +    ++I+ T     A  L   D + ++++G     G+   L
Sbjct: 179 VRKGRSIILTTHSMDEAEAL--CDRIAIMSDGKLRCIGSPQEL 219

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score =  123 bits (310), Expect = 3e-32
 Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 30/211 (14%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN-ETRLQD 101
             ILKD SGV    E+ ++LG  GSG + LL  LA   R +   +  G I  N     + 
Sbjct: 20  IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN--RTEGNVSVEGDIHYNGIPYKEF 77

Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
                 E  Y+ ++++    LTV E+L  A   K GN++ R                   
Sbjct: 78  AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-GNEFVRG------------------ 118

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
                  +SGG++KR+SIA  L+S  S++  D  T GLD   A  ++K +R MA    T 
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171

Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
              +L+Q S  + ++ D + VL EG   Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  123 bits (310), Expect = 7e-32
 Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 20/210 (9%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQD 101
            LKD++    + E   I+GPSGSGK+ LL++L G  +P      SG + IN    T+L +
Sbjct: 20  ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-----SGEVLINGKDLTKLSE 74

Query: 102 HRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
             +  LR++   ++ Q+ NLL +L TV E++ +   +      S   ++   + + + L 
Sbjct: 75  KELAKLRRKKIGFVFQNFNLLPDL-TVLENVELPLLIAG---KSAGRRKRAAEELLEVLG 130

Query: 158 IST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
           +           LSGGQ++R++IA  L++NP II  DEPT  LD   A  +++LLR++  
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190

Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEG 245
           + G  II   H P   L   AD +  L +G
Sbjct: 191 ERGKTIIMVTHDP--ELAKYADRVIELKDG 218

Length = 226

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  120 bits (304), Expect = 4e-31
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 33  YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
             +  Y    K  LKD+S      E  +++GP+GSGK+ LL +L G  +P      SG +
Sbjct: 8   NLSFRYP-GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-----SGEV 61

Query: 93  EINETRL---QDHRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESK 148
            ++       +    LR++   + Q+   Q    TVE+ +       LG    R+  E +
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEV-AFGLENLG--LPREEIEER 118

Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
           V    + + +    +    +LSGGQK+R++IA  L   P I+ LDEPT GLD      L+
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178

Query: 209 KLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +LL+ +  +G  T+II T H     +L  AD + VL +G     G 
Sbjct: 179 ELLKKLKEEGGKTIIIVT-HDLEL-VLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  120 bits (303), Expect = 1e-30
 Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 20/225 (8%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S+    K IL D+S      E++ ILGP+GSGK+ LL  LAG  +PK     SG + ++ 
Sbjct: 9   SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-----SGEVLLDG 63

Query: 97  TRLQD--HRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
             +     + L K+  Y+ Q       LTV E   L    HL L  + S K  E  V+  
Sbjct: 64  KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS-KEDEEIVEEA 122

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            + L +    +     LSGG+++R+ IA  L     I+ LDEPT+ LD  +   +++LLR
Sbjct: 123 LELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182

Query: 213 DMAH-QGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
           D+   +G  ++  LH      LN+A    D+L +L +G    QGT
Sbjct: 183 DLNREKGLTVVMVLHD-----LNLAARYADHLILLKDGKIVAQGT 222

Length = 258

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  114 bits (288), Expect = 3e-29
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 13/192 (6%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + SY  K  +IL D+S    + E+  + G +G+GKT L  ILAG  +        G I +
Sbjct: 6   SFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS-----GSILL 59

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           N   ++  +  RK   Y+MQD   Q L T     +V   L LG +      E + +++  
Sbjct: 60  NGKPIK-AKERRKSIGYVMQDVDYQ-LFTD----SVREELLLGLKELDAGNE-QAETVLK 112

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            L +   K      LSGGQK+RL+IA  LLS   ++  DEPT+GLDY N   + +L+R++
Sbjct: 113 DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172

Query: 215 AHQGTMIICTLH 226
           A QG  +I   H
Sbjct: 173 AAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  114 bits (287), Expect = 7e-29
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 25/223 (11%)

Query: 35  THSYS--IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           + +Y    +    LK +S      E   I+GPSGSGK+ LL+IL G  RP      SG +
Sbjct: 7   SKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----TSGEV 61

Query: 93  EINET---RLQDHRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHL--KLGNQYSRK 143
            ++ T   +L +  +   R+    ++ Q  NLL +L T  E++ +   L      +   +
Sbjct: 62  RVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL-TALENVELPLLLAGVPKKERRER 120

Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           A+E     + + + +    N     LSGGQ++R++IA  L ++P II  DEPT  LD   
Sbjct: 121 AEE-----LLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175

Query: 204 ATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEG 245
              +++LLR++  + GT I+   H P   L   AD +  L +G
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  120 bits (302), Expect = 3e-28
 Identities = 148/573 (25%), Positives = 264/573 (46%), Gaps = 102/573 (17%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           ILKD SG+     ++++LGP  SGKT LL  LAG  +   +   SG I  N  RL +  +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGEITYNGYRL-NEFV 236

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLK-------LGNQYSRKAK------ESKVDS 151
            RK S YI Q+++   ++TV+E+L  +A  +       L ++ +R+ K      E++VD 
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296

Query: 152 IADS------------------LSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPS 188
              +                  L +  CK+T+      + +SGGQKKR++   E++  P+
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPT 355

Query: 189 -IIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSASLLNMADYLYVLTEG 245
             +F+DE +TGLD      +VK L+ + H  + T+++ +L QP+    ++ D + +L+EG
Sbjct: 356 KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM-SLLQPAPETFDLFDDIILLSEG 414

Query: 246 YCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNT 305
              YQG    ++ +    G++CP     AD++ EV+ + D+        + + A+ +   
Sbjct: 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQ--------EQYWADRNKPY 466

Query: 306 KTVLKTIEEKGLSSKEFY--SVLSTEIPYPAD---------CLSQFCILLKRTLIKCFRD 354
           + +  ++ E     K F+    L  E+  P D           S++ +  K  L+K   D
Sbjct: 467 RYI--SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV-PKMELLKACWD 523

Query: 355 R-----------FLTK-VRLSLHLIIGSFLGI---MY-RGIGDDAARVHNNLSLLF--FS 396
           +           ++ K V++ +   I S + +   M+ R   D A  +    +LLF    
Sbjct: 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIG---ALLFSMII 580

Query: 397 TMFLMFTALSSMIITYPLEFEITRREHFN-RWFSLKAYYLATMVADIPVQLLCTVIY-CV 454
            MF  F  L+ MI   P+ F   R   F+  W     + L T +  IP+ ++ +V++  +
Sbjct: 581 NMFNGFAELALMIQRLPV-FYKQRDLLFHPPW----TFTLPTFLLGIPISIIESVVWVVI 635

Query: 455 TVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILDVKNGVIF----GPLTLLPW 510
           T Y I   P E  RF   LL+ VFL    Q    +  +I  V   +I     G L LL  
Sbjct: 636 TYYSIGFAP-EASRFFKQLLL-VFLI--QQMAAGIFRLIASVCRTMIIANTGGALVLLLV 691

Query: 511 TIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGI 543
            +  G+ + + + P+ +++ + +S L +    +
Sbjct: 692 FLLGGFILPKGEIPNWWEWAYWVSPLSYGFNAL 724

Length = 1470

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  111 bits (281), Expect = 7e-28
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 20/233 (8%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
            + +LK +       E+  I+GPSGSGK+ LL ++ G  RP     +SG + I+   +  
Sbjct: 12  GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----DSGEVLIDGEDISG 66

Query: 101 ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
               +   LR+    + Q   L + LTV E+  VA  L+   + S +     V    +++
Sbjct: 67  LSEAELYRLRRRMGMLFQSGALFDSLTVFEN--VAFPLREHTRLSEEEIREIVLEKLEAV 124

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-- 214
            +   ++     LSGG KKR+++A  L  +P ++  DEPT GLD + +  +  L+R +  
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184

Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV----PYLSDF 263
               T I+ T H    +   +AD + VL +G    +GT   L     P +  F
Sbjct: 185 ELGLTSIMVT-HDLD-TAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  107 bits (271), Expect = 3e-27
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 46/210 (21%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S     K  L DIS      E+  +LGP+G+GKT L+ I+ G  +P     +SG I++  
Sbjct: 7   SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----DSGEIKVLG 61

Query: 97  TRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
             ++     +++   Y+ ++  L E LTV E+L                           
Sbjct: 62  KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
                        LSGG K+RL++A  LL +P ++ LDEPT+GLD  +     +LLR++ 
Sbjct: 95  ------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEG 245
            +G  I+ + H        + D + +L  G
Sbjct: 143 KEGKTILLSSHILE-EAERLCDRVAILNNG 171

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  106 bits (268), Expect = 4e-27
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 62/211 (29%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S+    +  L ++S    + E+  ++GP+GSGK+ LL  +AG  +P      SG I I+ 
Sbjct: 6   SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----TSGEILIDG 60

Query: 97  TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
             +    +  LR+   Y+ Q                                        
Sbjct: 61  KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            LS             GGQ++R+++A  LL NP ++ LDEPT+GLD  +   L++LLR++
Sbjct: 81  -LS-------------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126

Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
           A +G  +I   H P       AD + VL +G
Sbjct: 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  108 bits (272), Expect = 4e-27
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
               K IL D++      ++  I+G SGSGK+ LL+I+    +      +SG + +N   
Sbjct: 7   KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----DSGQVYLNGQE 61

Query: 99  L------QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
                  +  +  R++  Y+ Q+  L E  TVEE+L +   LK     S+K K  K    
Sbjct: 62  TPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG--LKYKKL-SKKEKREKKKEA 118

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            + + ++         LSGG+++R+++A  +L  P +I  DEPT  LD  N   ++ LL 
Sbjct: 119 LEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178

Query: 213 DMAHQGTMIICTLHQPSASLLNMAD 237
           ++  +G  II   H P  +    AD
Sbjct: 179 ELNDEGKTIIIVTHDPEVA--KQAD 201

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  107 bits (269), Expect = 6e-27
 Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F+++S+S        Y  + K +LKD+S      E   I+GPSGSGK+ LL +L     P
Sbjct: 3   FKNVSFS--------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54

Query: 83  KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
                 SG I I+   L+  D   LRK   Y+ QD  L                     +
Sbjct: 55  -----TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---------------------F 88

Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           S         +I +++            LSGGQ++R++IA  LL +P I+ LDE T+ LD
Sbjct: 89  S--------GTIRENI------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128

Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
                 +++ LR +A   T+I+   H+   S +  AD + VL +G
Sbjct: 129 PETEALILEALRALAKGKTVIVIA-HRL--STIRDADRIIVLDDG 170

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  107 bits (269), Expect = 8e-27
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 46/218 (21%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S     + +L D+S    + E+  ILGP+G+GK+ LL  LAG  +P      SG I ++ 
Sbjct: 6   SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-----SGEILLDG 60

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV--AAHLKLGNQYSRKAKESKVDSIAD 154
             L    +  KE        L +++  V ++L +   AHL           +   +    
Sbjct: 61  KDL--ASLSPKE--------LARKIAYVPQALELLGLAHLA----------DRPFNE--- 97

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
                         LSGG+++R+ +A  L   P I+ LDEPT+ LD  +   L++LLR +
Sbjct: 98  --------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143

Query: 215 AHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           A + G  ++  LH  + +    AD + +L +G    QG
Sbjct: 144 ARERGKTVVMVLHDLNLAAR-YADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  107 bits (270), Expect = 1e-26
 Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 14/213 (6%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + +Y   S   L D+S      E   +LGPSG GKT LL ++AG  RP     +SG I I
Sbjct: 7   SKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----DSGEILI 59

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           +   +      R+    + QD  L   LTV E   +A  LKL     +    ++V  + +
Sbjct: 60  DGRDVTGVPPERRNIGMVFQDYALFPHLTVAE--NIAFGLKLRGV-PKAEIRARVRELLE 116

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            + +    N     LSGGQ++R+++A  L   PS++ LDEP + LD      L + L+++
Sbjct: 117 LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176

Query: 215 --AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
                 T I  T  Q  A  L +AD + V+ EG
Sbjct: 177 QRELGITTIYVTHDQEEA--LALADRIAVMNEG 207

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score =  103 bits (259), Expect = 4e-25
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 25/223 (11%)

Query: 36  HSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           H Y   S  K +L DI+      E+ ++ GPSGSGKT LL ++ G R  +      G ++
Sbjct: 9   HYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ-----EGSLK 63

Query: 94  I---------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
           +          +  +Q    LR+   YI Q + L   LT  +++ +A  L+     S + 
Sbjct: 64  VLGQELYGASEKELVQ----LRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQE 117

Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
              +  ++ +++ +    +    +LSGGQK+R++IA  L+  P ++  DEPT  LD  + 
Sbjct: 118 ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177

Query: 205 TNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY 246
            ++V+L++ +A  QG  I+   H     +L++AD +  + +G 
Sbjct: 178 RDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDGK 218

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  102 bits (257), Expect = 7e-25
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T  Y    K  L  +S       +  +LGP+G+GKT L+ ILA    P      SG I I
Sbjct: 7   TKRY--GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS-----SGTIRI 58

Query: 95  NETRLQDHRM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           +   +      LR+   Y+ Q+  +    TV E L   A LK     S++ K  +VD + 
Sbjct: 59  DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKA-RVDEVL 115

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           + +++          LSGG ++R+ IA  L+ +PSI+ +DEPT GLD         LL +
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175

Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           +     +I+ T H     + ++ + + VL +G   ++G
Sbjct: 176 LGEDRIVILST-HIVE-DVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  102 bits (257), Expect = 9e-25
 Identities = 57/217 (26%), Positives = 111/217 (51%), Gaps = 12/217 (5%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-- 96
               + ++  +S      E+  +LGP+G+GKT    ++ G  +P     +SG I ++   
Sbjct: 9   RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----DSGKILLDGQD 63

Query: 97  -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
            T+L  H+  R    Y+ Q+  +   LTVEE++     ++     S+K +E K++ + + 
Sbjct: 64  ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEE 120

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
             I+  + +    LSGG+++R+ IA  L +NP  + LDEP  G+D +   ++ K+++ + 
Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            +G  ++ T H      L++ D  Y++ EG    +GT
Sbjct: 181 DRGIGVLITDHNVRE-TLSITDRAYIIYEGKVLAEGT 216

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =   99 bits (250), Expect = 2e-24
 Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 48/214 (22%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S     K +L D+S    + E+  +LGPSGSGK+ LL  +AG   P     +SG I I+ 
Sbjct: 7   SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----DSGSILIDG 61

Query: 97  TRLQDHRM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
             L D       LR+    + QD  L   LTV E++ +                      
Sbjct: 62  EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------- 100

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
                           LSGGQ++R+++A  L  +P ++ LDEPT+ LD +    +  LL+
Sbjct: 101 ----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144

Query: 213 DM-AHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
            + A  G  ++   H        +AD + VL +G
Sbjct: 145 SLQAQLGITVVLVTHDL-DEAARLADRVVVLRDG 177

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  100 bits (252), Expect = 7e-24
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 18/197 (9%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--- 99
              LKD++      E+  I+GPSG+GK+ LL  L G   P      SG I  N  ++   
Sbjct: 17  HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----TSGEILFNGVQITKL 71

Query: 100 --QDHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAH---LKLGNQYSRKAKESKVDS 151
             ++ R LR++   I Q  NL+  L  +E  L   +        L   +S++ K   +D+
Sbjct: 72  KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA 131

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           + + + I          LSGGQ++R++IA  L+  P II  DEP   LD  +A  ++ +L
Sbjct: 132 L-ERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190

Query: 212 RDMA-HQGTMIICTLHQ 227
           +D+    G  +I  LHQ
Sbjct: 191 KDINQEDGITVIVNLHQ 207

Length = 258

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 20/206 (9%)

Query: 54  VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML------RK 107
           +++E++ I G SG+GK+ LL  +AG  +P       G I +N T L D R        ++
Sbjct: 21  LNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQR 75

Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
           +   + Q   L   L V E+L      K       +     VD + D L +    N    
Sbjct: 76  KIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA 130

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTL 225
            LSGG+K+R+++A  L + P ++ LDEP + LD      L+  L+ +       +I  T 
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT- 189

Query: 226 HQPSASLLNMADYLYVLTEGYCTYQG 251
           H  S     +AD + V+ +G   Y G
Sbjct: 190 HDLS-EAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 98.2 bits (245), Expect = 1e-23
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           + + +S    + E   + GP+G GKT LL ILAG  RP     +SG +  N T L + R 
Sbjct: 15  LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----DSGEVRWNGTALAEQRD 69

Query: 105 LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
               +  Y+     L+  L+  E+L   A +  G Q +       ++    ++ ++  ++
Sbjct: 70  EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFED 122

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
                LS GQ++RL++A   LS   +  LDEPTT LD      L  LLR    +G +++ 
Sbjct: 123 LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182

Query: 224 TLHQP 228
           T HQ 
Sbjct: 183 TTHQD 187

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 16/199 (8%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
            K  LKD+S      E   ++GPSG+GK+ LL  L G   P      SG + I+ T +  
Sbjct: 13  GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----TSGSVLIDGTDINK 67

Query: 101 ----DHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAHLKLGNQYSRKAKESKVDSIA 153
                 R LR++   I Q  NL++ L  +E  L+  +       + +    KE K  ++A
Sbjct: 68  LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA 127

Query: 154 --DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
             + + +          LSGGQ++R++IA  L+  P +I  DEP   LD  ++  ++ LL
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187

Query: 212 RDMAHQ-GTMIICTLHQPS 229
           + +  + G  +I +LHQ  
Sbjct: 188 KRINREEGITVIVSLHQVD 206

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 18/197 (9%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----EINET 97
           K  LK+I+      E   I+GPSG+GK+ LL  +     P     +SG I     +I + 
Sbjct: 15  KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----SSGSILLEGTDITKL 69

Query: 98  RLQDHRMLRKESCYIMQD-NLLQELLTVEESLT--VAAH---LKLGNQYSRKAKESKVDS 151
           R +  R LR+    I Q  NL++ L  +E  L   +        L  ++S + KE  + +
Sbjct: 70  RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           + + + ++         LSGGQ++R++IA  L   P +I  DEP   LD   +  ++  L
Sbjct: 130 L-ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188

Query: 212 RDMA-HQGTMIICTLHQ 227
           + +    G  +I  LHQ
Sbjct: 189 KRINKEDGITVIINLHQ 205

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  103 bits (260), Expect = 4e-23
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 21/256 (8%)

Query: 1   MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
              E+   + L   P+    + F+++S+    Y           +L+D+S      E   
Sbjct: 452 TPPEQEGDKTLIHLPKLQGEIEFENVSF---RYGPDD-----PPVLEDLSLEIPPGEKVA 503

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLL 118
           I+G SGSGK+ LL +L G  +P       G I ++   L   D   LR++  Y++QD  L
Sbjct: 504 IVGRSGSGKSTLLKLLLGLYKP-----QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL 558

Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDS--IADSLSISTCKNTLTKHLSGGQKKR 176
               ++ E++ +        +    A+ +          +   T       +LSGGQ++R
Sbjct: 559 FSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           L++A  LLS P I+ LDE T+ LD      +++ L  +    T+II   H+   S +  A
Sbjct: 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA-HRL--STIRSA 674

Query: 237 DYLYVLTEGYCTYQGT 252
           D + VL +G    QG+
Sbjct: 675 DRIIVLDQGKIVEQGS 690

Length = 709

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 98.0 bits (245), Expect = 6e-23
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 23/228 (10%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIE 93
           + S   + IL  +       E+  ILG SGSGK+ LL ++ G  RP K E         +
Sbjct: 15  TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74

Query: 94  INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           ++E  L +   +RK    + Q   L   LTV E+  VA  L+   ++++   ES +  + 
Sbjct: 75  LSEEELYE---IRKRMGVLFQQGALFSSLTVFEN--VAFPLR---EHTKL-PESLIRELV 125

Query: 154 DSLSISTC---KNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
             + +            +   LSGG +KR+++A  +  +P ++FLDEPT+GLD ++A  +
Sbjct: 126 L-MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184

Query: 208 VKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            +L+R++      T+I+ T H    SLL +AD + VL +G    +GT 
Sbjct: 185 DELIRELNDALGLTVIMVT-HDLD-SLLTIADRVAVLADGKVIAEGTP 230

Length = 263

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 96.1 bits (240), Expect = 1e-22
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 13/200 (6%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           + S     +L+D+S      E   I+GP+G+GK+ LL  + G  +P      SG I +  
Sbjct: 6   TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-----SGSIRVFG 60

Query: 97  TRLQDHRMLRKESCYIMQ-DNLLQEL-LTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
              +     RK   Y+ Q  ++ ++  ++V +   + +  H  L  + S+  K  KVD  
Sbjct: 61  ---KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA-KVDEA 116

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            + + +S   +     LSGGQ++R+ +A  L+ +P ++ LDEP  G+D     ++ +LLR
Sbjct: 117 LERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLR 176

Query: 213 DMAHQGTMIICTLHQPSASL 232
           ++  +G  I+   H     L
Sbjct: 177 ELRREGMTILVVTHDLGLVL 196

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 19/215 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQD 101
            L+ +S      E+  +LG +G+GKT LL  + G  RP+     SG I  +    T L  
Sbjct: 18  ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-----SGRIIFDGEDITGLPP 72

Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI--- 158
           H   R    Y+ +   +   LTVEE+L + A       Y+R+ KE++   + +   +   
Sbjct: 73  HERARLGIAYVPEGRRIFPRLTVEENLLLGA-------YARRDKEAQERDLEEVYELFPR 125

Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
               +N     LSGG+++ L+IA  L+S P ++ LDEP+ GL       + + ++++  +
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           G M I  + Q +   L +AD  YVL  G     GT
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220

Length = 237

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 11/198 (5%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           + S  ++ +L+DIS      E++ ++GP+G+GK+ LL  + G  +P       G I+I  
Sbjct: 11  TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-----GEIKIFG 65

Query: 97  TRLQDHRMLRKESCYIMQDNLLQEL--LTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
             ++  R   +   Y+ Q + +     +TV++   L          + ++K KE KVD  
Sbjct: 66  KPVRKRRKRLRIG-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE-KVDEA 123

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            + + +   ++     LSGGQK+R+ +A  L  NP ++ LDEP TG+D      +  LL+
Sbjct: 124 LERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183

Query: 213 DMAHQGTMIICTLHQPSA 230
           ++  +G  ++   H    
Sbjct: 184 ELRQEGKTVLMVTHDLGL 201

Length = 254

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 18/215 (8%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
             S+   S ++LKD++      E  V+LGPSG GK+ LL ++AG   P      SG I I
Sbjct: 10  RKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----TSGEILI 62

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           +   + D    ++    + Q+  L   +TV E++     LKL     +   + +V  +A 
Sbjct: 63  DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAK 119

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY----LNATNLVKL 210
            L +    N     LSGGQ++R+++A  L+  P +  LDEP + LD     L  + + KL
Sbjct: 120 LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179

Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
              +    T I  T  Q  A    +AD + V+ +G
Sbjct: 180 HERLG--TTTIYVTHDQVEAMT--LADRIVVMNDG 210

Length = 338

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 93.8 bits (234), Expect = 3e-22
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 46/201 (22%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +L+++S      E   I+GPSGSGK+ L  ++ G  RP          +I++    +   
Sbjct: 17  VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--- 73

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
           L     Y+ QD+   EL +                           SIA+++        
Sbjct: 74  LGDHVGYLPQDD---ELFS--------------------------GSIAENI-------- 96

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
               LSGGQ++RL +A  L  NP I+ LDEP + LD      L + +  +   G   I  
Sbjct: 97  ----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152

Query: 225 LHQPSASLLNMADYLYVLTEG 245
            H+P    L  AD + VL +G
Sbjct: 153 AHRP--ETLASADRILVLEDG 171

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 94.7 bits (236), Expect = 7e-22
 Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 9/182 (4%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           LK++S      +  VILGP+GSGK+ LL+ +AG+ +P     +SG I +N   + +    
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----DSGKILLNGKDITNLPPE 69

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
           +++  Y+ Q+  L   +TV +++      +      +K  E KV  IA+ L I    N  
Sbjct: 70  KRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK 126

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
            + LSGG+++R++IA  L+ NP I+ LDEP + LD      L + L+ +  + G  ++  
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186

Query: 225 LH 226
            H
Sbjct: 187 TH 188

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 96.3 bits (240), Expect = 7e-22
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 12/198 (6%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKK-TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
            LGP+G+GKT  + +L    RP   T   +GY  + E R      +R+    + Q   + 
Sbjct: 24  FLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-----VRRSIGIVPQYASVD 78

Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
           E LT  E+L +   L  G    +   E + + + +   +    +      SGG ++RL I
Sbjct: 79  EDLTGRENLEMMGRL-YG--LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDI 135

Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH-QPSASLLNMADY 238
           A  L+  P ++FLDEPTTGLD      +   +R +  +G  I+ T H    A  L   D 
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL--CDR 193

Query: 239 LYVLTEGYCTYQGTVPGL 256
           + ++  G    +GT   L
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 94.1 bits (235), Expect = 7e-22
 Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 35/237 (14%)

Query: 32  YYDTHSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKK 84
            + T   S+K    L D+S        S+       ++G SGSGK+ L   + G  +P  
Sbjct: 10  SFPTGGGSVK---ALDDVS-------FSIKKGETLGLVGESGSGKSTLARAILGLLKP-- 57

Query: 85  TETNSGYI-----EINETRLQDHRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLG 137
               SG I     ++ +   +  ++ RKE   + QD  + L   +T+ E +        G
Sbjct: 58  ---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL-RIHG 113

Query: 138 NQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
               ++A++  V  +   + +     N     LSGGQ++R++IA  L  NP ++  DEPT
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173

Query: 197 TGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           + LD      ++ LL+ +      T++  T H     +  +AD + V+  G    +G
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFIT-HDLGV-VAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 94.6 bits (236), Expect = 9e-22
 Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 26/236 (11%)

Query: 35  THSYSIK--SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           +  Y     +   L ++S      E   I+G SGSGK+ L  +LAG  +P     +SG I
Sbjct: 10  SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----SSGSI 64

Query: 93  EINETRLQDHRMLRKESC---YIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
            ++   L   +  +        + QD  + L    TV   L+                + 
Sbjct: 65  LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-----GLSKSQQ 119

Query: 148 KVDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
           ++  + D + +    + L +    LSGGQ++R++IA  L+  P ++ LDEPT+ LD    
Sbjct: 120 RIAELLDQVGLP--PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177

Query: 205 TNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP 258
             ++ LL ++      T +  + H   A + +M D + V+  G     G    L+ 
Sbjct: 178 AQILNLLLELKKERGLTYLFIS-HD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL---- 99
           ++LK ++      E+  +LG +G+GK+ LL  L G  RP+     SG + I+   L    
Sbjct: 6   EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLDYSR 60

Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSI 158
           +     R+    + QD    +L   +    VA   L LG   S    E +V     ++  
Sbjct: 61  KGLLERRQRVGLVFQDPD-DQLFAADVDQDVAFGPLNLG--LSEAEVERRVREALTAVGA 117

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
           S  +   T  LSGG+KKR++IA  +   P ++ LDEPT GLD      ++ +LR +  +G
Sbjct: 118 SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177

Query: 219 TMIICTLH 226
             ++ + H
Sbjct: 178 MTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 92.5 bits (231), Expect = 3e-21
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 25/217 (11%)

Query: 45  ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQ 100
           IL  +S + V + E+  +LG +G+GKT LL  + G   P+     SG I  +    T L 
Sbjct: 15  ILFGVS-LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-----SGSIRFDGRDITGLP 68

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-- 158
            H   R    Y+ +   +   LTVEE+L + A+         + +  +   +     +  
Sbjct: 69  PHERARAGIGYVPEGRRIFPELTVEENLLLGAY--------ARRRAKRKARLERVYELFP 120

Query: 159 --STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
                +  L   LSGG+++ L+IA  L+S P ++ LDEP+ GL       + + +R++  
Sbjct: 121 RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180

Query: 217 QGTMIICTL-HQPSASLLNMADYLYVLTEGYCTYQGT 252
           +G  I+  L  Q +   L +AD  YVL  G    +GT
Sbjct: 181 EGVTIL--LVEQNARFALEIADRAYVLERGRVVLEGT 215

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 92.6 bits (231), Expect = 3e-21
 Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 23/198 (11%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S S   K++LK IS      E+ VI+GPSGSGK+ LL  L G   P     +SG I ++ 
Sbjct: 9   SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----DSGSITVDG 63

Query: 97  TRL---QDHRMLRKESCYIMQD-NLLQELLTVEESLTVA--AHLKLGNQYSRK-AKE--S 147
             +   +D   LR++   + Q  NL   L TV E++T+A     KL    +R+ A E   
Sbjct: 64  EDVGDKKDILKLRRKVGMVFQQFNLFPHL-TVLENVTLAPVKVKKLSKAEAREKALELLE 122

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           KV  +AD        +     LSGGQ++R++IA  L  +P ++  DEPT+ LD      +
Sbjct: 123 KVG-LADK------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175

Query: 208 VKLLRDMAHQG-TMIICT 224
           + +++D+A +G TMII T
Sbjct: 176 LDVMKDLAEEGMTMIIVT 193

Length = 240

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 92.5 bits (231), Expect = 4e-21
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 40/222 (18%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDH 102
           L D+S      E+  ++GP+G+GKT L ++++G+ RP      SG +  +    T L  H
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----TSGSVLFDGEDITGLPPH 70

Query: 103 R-----MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQY-------SRKAKESKV 149
                 + R       Q   L  EL TV E++ VAA  + G+           +    + 
Sbjct: 71  EIARLGIGRT-----FQIPRLFPEL-TVLENVMVAAQARTGSGLLLARARREEREARERA 124

Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
           + + + + ++   +     LS GQ++RL IA  L ++P ++ LDEP  GL+      L +
Sbjct: 125 EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184

Query: 210 LLRDMAHQGTMIICTLHQPSASLLNM------ADYLYVLTEG 245
           L+R++  +G  ++   H       +M      AD + VL +G
Sbjct: 185 LIRELRERGITVLLVEH-------DMDVVMSLADRVTVLDQG 219

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 92.6 bits (231), Expect = 4e-21
 Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 25/216 (11%)

Query: 37  SYSIKSKDILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY 91
           S S    ++L+DI+     G FV+     ILGPSG GK+ LL ++AG  +P      SG 
Sbjct: 10  SKSFGGVEVLEDINLSVEKGEFVA-----ILGPSGCGKSTLLRLIAGLEKP-----TSGE 59

Query: 92  IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
           + ++   +        +  Y+ Q++ L   LTV ++  VA  L+L    S+     +   
Sbjct: 60  VLLDGRPVTGPG---PDIGYVFQEDALLPWLTVLDN--VALGLELR-GKSKAEARERAKE 113

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           + + + ++  ++     LSGG ++R++IA  L + P ++ LDEP   LD L    L   L
Sbjct: 114 LLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173

Query: 212 RDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEG 245
             +  +   T+++ T H    ++  +AD + VL+  
Sbjct: 174 LRLWEETRKTVLLVT-HDVDEAVY-LADRVVVLSNR 207

Length = 248

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 91.7 bits (228), Expect = 4e-21
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-- 103
           L  I+    + E   ++GPSG+GK+ LL ++     P      SG I +N   + D R  
Sbjct: 17  LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----TSGTIRVNGQDVSDLRGR 71

Query: 104 ---MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
               LR++   + QD  L     V E++  A  +        +    +V +  + + +S 
Sbjct: 72  AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV---TGVPPREIRKRVPAALELVGLSH 128

Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
               L   LSGG+++R++IA  ++++P+I+  DEPT  LD      ++ LL+ +   GT 
Sbjct: 129 KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188

Query: 221 IICTLH 226
           ++   H
Sbjct: 189 VVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +  D+S    + E   I GP+G+GKT LL ILAG  RP     ++G +      +Q+ R 
Sbjct: 17  LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----DAGEVYWQGEPIQNVRE 71

Query: 105 LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
              ++  Y+     ++  LT  E+L          ++      + +      + ++  ++
Sbjct: 72  SYHQALLYLGHQPGIKTELTALENL------HFWQRFHGSGNAATIWEALAQVGLAGLED 125

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
                LS GQ++R+++A   LS   +  LDEP T LD      L  L+   A QG +++ 
Sbjct: 126 LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185

Query: 224 TLHQP 228
           T HQP
Sbjct: 186 TTHQP 190

Length = 209

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 91.9 bits (229), Expect = 6e-21
 Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 14/219 (6%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-- 96
           S K + ++ D+S    S E+  +LGP+G+GKT    ++ G  RP     +SG I +++  
Sbjct: 13  SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----DSGKILLDDED 67

Query: 97  -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIA 153
            T+L  H+  R    Y+ Q+  +   LTVE+++     ++   +   K  E K  +D++ 
Sbjct: 68  ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALL 124

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           +   I+  +++    LSGG+++R+ IA  L +NP  I LDEP  G+D +   ++ ++++ 
Sbjct: 125 EEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184

Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +  +G  ++ T H      L++ D  Y++++G    +G+
Sbjct: 185 LKDRGIGVLITDHN-VRETLDICDRAYIISDGKVLAEGS 222

Length = 243

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 90.8 bits (226), Expect = 9e-21
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 14/200 (7%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + +Y       L D+S      E   + GPSG+GKT LL +L G   P +     G + I
Sbjct: 8   SKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR-----GQVRI 61

Query: 95  NET---RLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
                 RL+  ++  LR+    + QD  L    TV E+  VA  L++  +  R+  + +V
Sbjct: 62  AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYEN--VALPLEVRGKKEREI-QRRV 118

Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
            +    + +    +   + LSGG+++R++IA  ++++P ++  DEPT  LD   +  ++ 
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178

Query: 210 LLRDMAHQGTMIICTLHQPS 229
           LL+ +  +GT +I   H  S
Sbjct: 179 LLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 90.9 bits (226), Expect = 9e-21
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 21/222 (9%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S     +  + +IS       +  +LGP+G+GK+ LL ++ G  RP      SG I  + 
Sbjct: 7   SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----TSGEIIFD- 60

Query: 97  TRLQDHRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
                H   RK+   I   ++   L E LT  E+L V   L           +S++D + 
Sbjct: 61  ----GHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTL-------LGLPDSRIDEVL 109

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           + + ++       K  S G K+RL IA+ LL++P ++ LDEPT GLD +    L +L+R 
Sbjct: 110 NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169

Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG 255
              QG  +I + H  S  +  +AD++ +++EG   YQG +  
Sbjct: 170 FPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 91.8 bits (228), Expect = 1e-20
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
            +SYS  SK+ L +I+ +        ++GP+G+GK+ L     G  +P      SG + I
Sbjct: 10  CYSYS-GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-----SGSVLI 63

Query: 95  NETRL--QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
               +  ++ R +RK    + Q+   Q      E       + LG     +    +V S 
Sbjct: 64  RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG--LDEETVAHRVSSA 121

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
              L +   ++ +  HLSGG+KKR++IA  +   P ++ LDEPT GLD      L+  L 
Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181

Query: 213 DMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           D+    G  +I + HQ    +  MADY+YV+ +G     GTV
Sbjct: 182 DLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYGTV 222

Length = 277

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR- 103
           +LK I       E+ VI+GPSGSGK+ LL  +     P     +SG I I+  +L D + 
Sbjct: 15  VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----DSGTIIIDGLKLTDDKK 69

Query: 104 ---MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL---- 156
               LR++   + Q   L   LTV E++T      L     +   +++ +  A  L    
Sbjct: 70  NINELRQKVGMVFQQFNLFPHLTVLENIT------LAPIKVKGMSKAEAEERALELLEKV 123

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            ++   +     LSGGQ++R++IA  L  NP ++  DEPT+ LD      ++ +++D+A 
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183

Query: 217 QG-TMIICT 224
           +G TM++ T
Sbjct: 184 EGMTMVVVT 192

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 11/206 (5%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
               + DIS      E   +LGPSG GKT LL ++AG+ +P     +SG I ++   + D
Sbjct: 17  DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----SSGEILLDGEDITD 71

Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
               ++    + Q   L   +TVEE+  VA  LK+  +  +   +++V+   + + +   
Sbjct: 72  VPPEKRPIGMVFQSYALFPHMTVEEN--VAFGLKVRKKLKKAEIKARVEEALELVGLEGF 129

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--T 219
            +     LSGGQ++R+++A  L+  P ++ LDEP + LD      + K L+++  +   T
Sbjct: 130 ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189

Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
            +  T  Q  A  L M+D + V+ +G
Sbjct: 190 FVYVTHDQEEA--LAMSDRIAVMNDG 213

Length = 352

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 41/204 (20%)

Query: 60  VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNL 117
            I+G  GSGK+ LL +LAG  +P      SG + ++ T ++  D   LR+   Y+ QD  
Sbjct: 34  AIIGRVGSGKSTLLKLLAGLYKPT-----SGSVLLDGTDIRQLDPADLRRNIGYVPQDV- 87

Query: 118 LQELL--TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH------- 168
              L   T+ +++T      LG   +   +      I  +  ++   + + KH       
Sbjct: 88  --TLFYGTLRDNIT------LGAPLADDER------ILRAAELAGVTDFVNKHPNGLDLQ 133

Query: 169 -------LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
                  LSGGQ++ +++A  LL++P I+ LDEPT+ +D  +   L + LR +    T+I
Sbjct: 134 IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLI 193

Query: 222 ICTLHQPSASLLNMADYLYVLTEG 245
           I T H+P  SLL++ D + V+  G
Sbjct: 194 IIT-HRP--SLLDLVDRIIVMDSG 214

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 93.5 bits (233), Expect = 5e-20
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
             K  L D++    + +L+ ++G SG+GK+ LL++L G+  P       G I +N   L+
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLR 386

Query: 101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLS 157
           D      RK+  ++ Q+  L    T+ E++ +A       +      ++ +   +     
Sbjct: 387 DLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDG 445

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           + T        LSGGQ +RL++A  LLS  S++ LDEPT  LD      +++ L+++A Q
Sbjct: 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            T+++ T H+        AD + VL  G    QGT
Sbjct: 506 KTVLVIT-HRL--EDAADADRIVVLDNGRLVEQGT 537

Length = 559

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 87.9 bits (218), Expect = 6e-20
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQD 115
           E   + GP+GSGKT LL ILAG   P      +G + +N   L   R        Y+   
Sbjct: 27  EALQVTGPNGSGKTTLLRILAGLSPP-----LAGRVLLNGGPLDFQRDSIARGLLYLGHA 81

Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
             ++  L+V E+L           +     + +V+     + ++  ++     LS GQ++
Sbjct: 82  PGIKTTLSVLENLRF---------WHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQR 132

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           R+++A  LLS   +  LDEPTT LD        + +     +G M++ T HQ 
Sbjct: 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 88.1 bits (219), Expect = 8e-20
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
            +   L D++      E  V+LGPSG GKT  L ++AG   P      SG I I    + 
Sbjct: 11  GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----TSGRIYIGGRDVT 65

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
           D     ++   + Q+  L   +TV +++  A  LKL  +  +   + +V  +A+ L I  
Sbjct: 66  DLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKL-RKVPKDEIDERVREVAELLQIEH 122

Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD----YLNATNLVKLLRDMAH 216
             +   K LSGGQ++R+++   ++  P +  +DEP + LD          L +L +    
Sbjct: 123 LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--L 180

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEG 245
             T I  T  Q  A  + MAD + V+ +G
Sbjct: 181 GTTTIYVTHDQVEA--MTMADRIAVMNDG 207

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 87.2 bits (217), Expect = 1e-19
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 31/211 (14%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDH 102
           +   +S    + E  V+ GP+GSGKT LL ++AG   P      +G I+++  +    D 
Sbjct: 17  LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-----AGTIKLDGGDIDDPDV 71

Query: 103 RMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
                E+C Y+   N ++  LTV E+L   A   LG       +E  + +  +++ ++  
Sbjct: 72  A----EACHYLGHRNAMKPALTVAENLEFWAAF-LGG------EELDIAAALEAVGLAPL 120

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM--AH--Q 217
            +    +LS GQK+R+++A  L+SN  I  LDEPT  LD       V L  ++  AH  Q
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD----AAAVALFAELIRAHLAQ 176

Query: 218 GTMIICTLHQP----SASLLNMADYLYVLTE 244
           G ++I   H P     A  L++  +      
Sbjct: 177 GGIVIAATHIPLGLPGARELDLGPFAAEDPA 207

Length = 207

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHRMLRKESCYIMQD 115
           E+  +LGP+G+GKT  + +L    +P     T +G+  + E R      +R+    + QD
Sbjct: 27  EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR-----EVRRRIGIVFQD 81

Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
             + + LT  E+L +  H +L      + +E ++D + D + +    + L K  SGG ++
Sbjct: 82  LSVDDELTGWENLYI--HARLYGVPGAERRE-RIDELLDFVGLLEAADRLVKTYSGGMRR 138

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLH 226
           RL IA  L+  P ++FLDEPT GLD     ++ + +  +    G  I+ T H
Sbjct: 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K IL D+S    + +++ ++GP+G GK+ LL   A    P+     SG + + +  +   
Sbjct: 15  KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-----SGTVFLGDKPISML 69

Query: 103 --RMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
             R L +    + Q +L  E +TV E  +   +  L L  + S +   ++V+   +   I
Sbjct: 70  SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-DNARVNQAMEQTRI 128

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
           +   +     LSGGQ++R  +A+ L  +  ++ LDEPTT LD  +   L++L+R++  QG
Sbjct: 129 NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQG 188

Query: 219 TMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
             ++  LH      LN A    D+L VL  G+   QGT
Sbjct: 189 KTVVTVLHD-----LNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 25/201 (12%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDHRMLRK---ESCYIMQ 114
           ++GP+G+GKT L +++ G+ +P     +SG +       T L  HR+ R     +  I +
Sbjct: 35  LIGPNGAGKTTLFNLITGFYKP-----SSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89

Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKES---------KVDSIADSLSISTCKNTL 165
             L   L TV E++ V AH +LG         +         +   + + + +    +  
Sbjct: 90  --LFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP 146

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
             +LS GQ++RL IA  L + P ++ LDEP  GL+      L +L+R++  + G  I+  
Sbjct: 147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206

Query: 225 LHQPSASLLNMADYLYVLTEG 245
            H     ++ +AD + VL  G
Sbjct: 207 EHDMKL-VMGLADRIVVLNYG 226

Length = 250

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%)

Query: 21  LLFQDISYSALYYDTHSYSIKSKDILKDIS-----GVFVSKELSVILGPSGSGKTKLLDI 75
           L  +++S +   Y        +   L+DIS     G FV+     ++GPSG GK+ LL I
Sbjct: 1   LEVRNVSKT---YGGGG---GAVTALEDISLSVEEGEFVA-----LVGPSGCGKSTLLRI 49

Query: 76  LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK 135
           +AG  RP      SG + ++   +        +  Y+ Q + L   LTV ++  VA  L+
Sbjct: 50  IAGLERPT-----SGEVLVDGEPVTGPG---PDRGYVFQQDALLPWLTVLDN--VALGLE 99

Query: 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195
           L     +     + + + + + +S  +N     LSGG ++R+++A  L  +P ++ LDEP
Sbjct: 100 LQGV-PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158

Query: 196 TTGLDYLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            + LD L    L + L D+  +   T+++ T H    ++  +AD + VL+         V
Sbjct: 159 FSALDALTREQLQEELLDIWRETGKTVLLVT-HDIDEAVF-LADRVVVLSARPGRIVAEV 216

Query: 254 P 254
            
Sbjct: 217 E 217

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 31/233 (13%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           SYS+  + +L  +S      E+  ILGP+G+GK+ LL  L+G   P   E     + +N 
Sbjct: 8   SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67

Query: 97  ---TRLQDHR-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VD 150
                L  HR +L        Q++ L    TV+E + +       ++  R+ +E +    
Sbjct: 68  WPPEELARHRAVLP-------QNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAA 117

Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALEL------LSNPSIIFLDEPTTGLDYLNA 204
               +  +S       + LSGG+++R+ +A  L      + +   +FLDEPT+ LD  + 
Sbjct: 118 QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177

Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
            + ++L R +A +G  ++  LH      LN+A    D + +L +G     G+ 
Sbjct: 178 HHTLRLARQLAREGGAVLAVLHD-----LNLAAQYADRIVLLHQGRVIASGSP 225

Length = 259

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 86.0 bits (213), Expect = 4e-19
 Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 53  FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKES 109
           F   E++ I+GPSGSGK+ LL+++AG+  P+     SG + IN     D        +  
Sbjct: 21  FAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-----SGRVLING---VDVTAAPPADRPV 72

Query: 110 CYIMQDNLLQELLTVEES--LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
             + Q+N L   LTVE++  L ++  LKL     R+A    ++     + ++  +  L  
Sbjct: 73  SMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQA----IEVALARVGLAGLEKRLPG 127

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLH 226
            LSGG+++R+++A  L+ +  ++ LDEP   LD      ++ L+ D+ A     ++   H
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187

Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
           QP  +   +A  +  L  G    QG
Sbjct: 188 QPEDA-KRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 22/203 (10%)

Query: 56  KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYI 112
            E+  ILGPSG+GK+ LL+++AG+  P      SG I IN     DH       +    +
Sbjct: 25  GEIVAILGPSGAGKSTLLNLIAGFETPA-----SGEILING---VDHTASPPAERPVSML 76

Query: 113 MQDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
            Q+N L   LTV +++ +     LKL        +  KV++ A  + ++     L   LS
Sbjct: 77  FQENNLFAHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGFLKRLPGELS 131

Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQP 228
           GGQ++R+++A  L+    I+ LDEP + LD      ++ L+  +    + T+++ T H P
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT-HHP 190

Query: 229 SASLLNMADYLYVLTEGYCTYQG 251
                 +AD +  L  G    QG
Sbjct: 191 E-DAARIADRVVFLDNGRIAAQG 212

Length = 231

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 86.7 bits (215), Expect = 6e-19
 Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 18/203 (8%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-DHRML---RKESCYI 112
           E+  +LGP+G+GK+ L     G  +P      SG + I    ++ D + L   RK    +
Sbjct: 29  EMVALLGPNGAGKSTLFLHFNGILKPT-----SGEVLIKGEPIKYDKKSLLEVRKTVGIV 83

Query: 113 MQ---DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169
            Q   D L     TVEE +     L LG   S++  E +V     ++ +   +N    HL
Sbjct: 84  FQNPDDQLFAP--TVEEDVAFGP-LNLG--LSKEEVEKRVKEALKAVGMEGFENKPPHHL 138

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
           SGGQKKR++IA  L   P II LDEPT+GLD + A+ ++KLL D+  +G  II + H   
Sbjct: 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198

Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
              +  AD +YV+++G    +GT
Sbjct: 199 LVPV-YADKVYVMSDGKIIKEGT 220

Length = 275

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 16/209 (7%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
           K  + D++      E  V++GPSGSGKT  L ++     P      SG I I+  +    
Sbjct: 14  KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----TSGEILIDGEDISDL 68

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS--LSI 158
           D   LR++  Y++Q   L   LTV E++     L     + ++  + + D + D   L  
Sbjct: 69  DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP 125

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ- 217
           S   +     LSGGQ++R+ +A  L ++P I+ +DEP   LD +    L + ++++  + 
Sbjct: 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL-QKE 184

Query: 218 -GTMIICTLHQPSASLLNMADYLYVLTEG 245
            G  I+   H    + L +AD + V+  G
Sbjct: 185 LGKTIVFVTHDIDEA-LKLADRIAVMDAG 212

Length = 309

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 87.2 bits (217), Expect = 9e-19
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 25/231 (10%)

Query: 31  LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           + + T +  +K    +  +S      E+  I+G SGSGK+ L   + G           G
Sbjct: 9   VSFPTDAGVVK---AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65

Query: 91  YIEIN--------ETRLQDHRMLRKESCYIMQD--NLLQELLTVEESL--TVAAHLKLGN 138
            I  +        E  L+  R   KE   I QD    L  ++T+ + +   +  H K   
Sbjct: 66  EILFDGKDLLSLSEKELRKIR--GKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL- 122

Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEP 195
             S+K  + +   + + + I   +  L  +   LSGG ++R+ IA+ L  NP ++  DEP
Sbjct: 123 --SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180

Query: 196 TTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEG 245
           TT LD      ++ LL+++  + GT +I   H     +  +AD + V+  G
Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230

Length = 316

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 14/214 (6%)

Query: 46  LKDISGVFVSKELSV--ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
           ++D+S  F ++E  +  +LG +G+GKT LL ++A    P     +SG + I+        
Sbjct: 18  VRDVS--FEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----DSGKVTIDGVDTVRDP 70

Query: 104 MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
              +    ++     L   LT  E+L   A L   N  SRK  ++++  ++  L +    
Sbjct: 71  SFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYL 127

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           +      S G K++++IA  L+ +PSI+ LDEPT+GLD          ++ + ++G  +I
Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVI 187

Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
            + H     +  + D + VL +G    +G++  L
Sbjct: 188 FSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEAL 220

Length = 245

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 84.8 bits (211), Expect = 2e-18
 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 46/239 (19%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S  +  + +L D+S      E+  ILGP+G+GK+ LL  L+G   P      SG + +N 
Sbjct: 9   SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-----SGEVRLNG 63

Query: 97  TRLQD--------HR-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---NQYSRKA 144
             L D         R +L        Q + L    TVEE   VA    +G   +  SR  
Sbjct: 64  RPLADWSPAELARRRAVLP-------QHSSLSFPFTVEE--VVA----MGRAPHGLSRAE 110

Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA--LELLSN----PSIIFLDEPTTG 198
            ++ V +    + ++         LSGG+++R+ +A  L  L      P  + LDEPT+ 
Sbjct: 111 DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170

Query: 199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
           LD  +  ++++L R +AH +G  +I  LH      LN+A    D + +L +G     GT
Sbjct: 171 LDLAHQHHVLRLARQLAHERGLAVIVVLHD-----LNLAARYADRIVLLHQGRLVADGT 224

Length = 258

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 12/202 (5%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L D++    +  L  +LGPSGSGK+ LL I+AG  +P     +SG I +N          
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----DSGRIRLNGQDATRVHAR 70

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
            ++  ++ Q   L + LTV ++  +A  L++      K K  +V+ + + + +    +  
Sbjct: 71  DRKIGFVFQHYALFKHLTVRDN--IAFGLEIRKHPKAKIKA-RVEELLELVQLEGLGDRY 127

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIIC 223
              LSGGQ++R+++A  L   P ++ LDEP   LD      L   LR +  +   T +  
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187

Query: 224 TLHQPSASLLNMADYLYVLTEG 245
           T  Q  A  + +AD + V++ G
Sbjct: 188 THDQEEA--MEVADRIVVMSNG 207

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 35  THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           T  +    K +  +  +S      E++ +LGP+G+GKT  L +LAG   P     ++G+ 
Sbjct: 8   TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----DAGFA 62

Query: 93  EINETR-LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
            ++    +++    R+   ++     L + LT  E+L   A L            ++++ 
Sbjct: 63  TVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEE 119

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           +AD L +    +      S G +++++IA  L+ +P ++ LDEPTTGLD +    L + +
Sbjct: 120 LADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179

Query: 212 RDMAHQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTYQG 251
           R +   G  I+ + H  Q    L    D + VL  G   Y+G
Sbjct: 180 RQLRALGKCILFSTHIMQEVERL---CDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 23/205 (11%)

Query: 61  ILGPSGSGKT----KLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD- 115
           ++G SGSGK+     +L +L     P      SG I ++   L    +  +    IMQ+ 
Sbjct: 17  LVGESGSGKSLTCLAILGLL-----PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71

Query: 116 -NLLQELLTVEESL--TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---L 169
                 L T+      T+ +  KL    S++A+   ++++ +++ +   +  L K+   L
Sbjct: 72  RTAFNPLFTMGNHAIETLRSLGKL----SKQARALILEAL-EAVGLPDPEEVLKKYPFQL 126

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQP 228
           SGG  +R+ IAL LL  P  +  DEPTT LD +N   ++KLLR++    GT I+   H  
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186

Query: 229 SASLLNMADYLYVLTEGYCTYQGTV 253
              +  +AD + V+ +G    +GTV
Sbjct: 187 GV-VARIADEVAVMDDGRIVERGTV 210

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 87.6 bits (218), Expect = 4e-18
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 22/196 (11%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ----DHRMLRKESCYIMQD- 115
           ++G SGSGK+ L  ILAG   P      SG I  +   L     + R LR+    + QD 
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376

Query: 116 -NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSG 171
            + L   +TV + L     L++    S   + ++V  + + + +      L ++   LSG
Sbjct: 377 YSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EFLDRYPHELSG 432

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIICTLHQPS 229
           GQ++R++IA  L   P ++ LDEP + LD      ++ LL+D+  +   T +  +     
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-- 490

Query: 230 ASLLNMADYLYVLTEG 245
           A +  +AD + V+ +G
Sbjct: 491 AVVRYIADRVAVMYDG 506

Length = 539

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 54/215 (25%), Positives = 115/215 (53%), Gaps = 11/215 (5%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---T 97
           K + +++D+S    S E+  +LGP+G+GKT    ++ G         ++G I I++   +
Sbjct: 14  KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----VPRDAGNIIIDDEDIS 68

Query: 98  RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
            L  H   R+   Y+ Q+  +   L+V ++L   A L++ +  S + +E + + + +   
Sbjct: 69  LLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFH 126

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           I   ++++ + LSGG+++R+ IA  L +NP  I LDEP  G+D ++  ++ +++  +   
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           G  ++ T H    + L + +  Y++++G+    GT
Sbjct: 187 GLGVLITDHNVRET-LAVCERAYIVSQGHLIAHGT 220

Length = 241

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 87.5 bits (217), Expect = 5e-18
 Identities = 77/261 (29%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 3   SEEAELQD-LKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
            EE E++D          ++ F+++S+S   Y         K +LKDIS      E   I
Sbjct: 310 DEEPEVEDPPDPLKDTIGSIEFENVSFS---YPGK------KPVLKDISFSIEPGEKVAI 360

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQ 119
           +GPSGSGK+ L+ +L     P      SG I I+   ++D     LRK    + QD LL 
Sbjct: 361 VGPSGSGKSTLIKLLLRLYDP-----TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLF 415

Query: 120 ELLTVEESLTVAAHLKLGNQY------SRKAKESKVDSIADSLS--ISTCKNTLTKHLSG 171
                  S T+  ++ LG             K +       +L     T       +LSG
Sbjct: 416 -------SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
           GQ++RL+IA  LL NP I+ LDE T+ LD      +   L+ +    T +I   H+   S
Sbjct: 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA-HRL--S 525

Query: 232 LLNMADYLYVLTEGYCTYQGT 252
            +  AD + VL  G    +GT
Sbjct: 526 TIKNADRIIVLDNGRIVERGT 546

Length = 567

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           +     K  LKDIS      E++ ++GPSG GK+ LL +L           + G + ++ 
Sbjct: 7   NVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66

Query: 97  TRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
             + D  +    LR+    + Q  N            ++  ++  G +      + ++D 
Sbjct: 67  KDIYDLDVDVLELRRRVGMVFQKPNPF--------PGSIYDNVAYGLRLHGIKLKEELDE 118

Query: 152 IA-DSLSI-----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
              ++L                 LSGGQ++RL +A  L + P ++ LDEPT+ LD ++  
Sbjct: 119 RVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178

Query: 206 NLVKLLRDMAHQGTMIICT--LHQPSASLLNMADYLYVLTEG 245
            + +L+ ++  + T++I T  + Q       +AD    L  G
Sbjct: 179 KIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFLLNG 216

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 82.6 bits (205), Expect = 7e-18
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 13/190 (6%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TR 98
            ++ L+D+S      E   + GPSG+GK+ LL ++ G  RP       G I +N    +R
Sbjct: 14  GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----TRGKILVNGHDLSR 68

Query: 99  LQDHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
           L+      LR++   + QD  L    TV E+  VA  L++      +    +V  + D +
Sbjct: 69  LKGREIPFLRRQIGVVFQDFRLLPDRTVYEN--VALPLRV-IGKPPREIRRRVSEVLDLV 125

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            +      L   LSGG+++R++IA  +++ P+++  DEPT  LD   +  +++L  ++  
Sbjct: 126 GLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185

Query: 217 QGTMIICTLH 226
            GT ++   H
Sbjct: 186 LGTTVLMATH 195

Length = 223

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 82.2 bits (203), Expect = 7e-18
 Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 20/201 (9%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYIM 113
           E+  I+GPSG+GK+ LL+++AG+  P      SG I++N+   Q H  L   ++    + 
Sbjct: 25  EIVAIMGPSGAGKSTLLNLIAGFIEPA-----SGSIKVND---QSHTGLAPYQRPVSMLF 76

Query: 114 QDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
           Q+N L   LTV +++ +  H  LKL        ++ KV   A  + I+   + L + LSG
Sbjct: 77  QENNLFAHLTVRQNIGLGLHPGLKL-----NAEQQEKVVDAAQQVGIADYLDRLPEQLSG 131

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM-IICTLHQPSA 230
           GQ++R+++A  L+    I+ LDEP + LD L    ++ L++ +  +    ++   H  S 
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190

Query: 231 SLLNMADYLYVLTEGYCTYQG 251
               +A  + V+++G      
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 82.8 bits (205), Expect = 7e-18
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 20/218 (9%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
           +  + LK IS      E+   +GP+G+GKT  L IL+G  +P      SG + +      
Sbjct: 32  REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----TSGEVRVAGLVPW 86

Query: 101 DHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIADSL 156
             R   LR+      Q   L   L V +S  + A +     Y       K  +D +++ L
Sbjct: 87  KRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI-----YDLPPARFKKRLDELSELL 141

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-A 215
            +    +T  + LS GQ+ R  IA  LL  P I+FLDEPT GLD +   N+   L++   
Sbjct: 142 DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201

Query: 216 HQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTYQG 251
            +GT ++ T H  +   +L   A  + V+ +G   Y G
Sbjct: 202 ERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 85.2 bits (211), Expect = 7e-18
 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 28/249 (11%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
           D    + G      ++ I G SGSGKT L+ ++AG  RP +     G I +N   L D R
Sbjct: 15  DADFTLPGQ----GVTAIFGRSGSGKTTLIRLIAGLTRPDE-----GEIVLNGRTLFDSR 65

Query: 104 ML------RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIADSL 156
                   ++   Y+ Q+        +   L+V  +L+ G + +R   +    + + + L
Sbjct: 66  KGIFLPPEKRRIGYVFQE------ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL 119

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-A 215
            I      L   LSGG+K+R++I   LLS+P ++ +DEP   LD      ++  L  + A
Sbjct: 120 GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPAD 275
             G  I+   H     +L +AD + VL +G     G     V    D  +          
Sbjct: 180 EFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGP-IAEVWASPDLPWL---AREDQG 234

Query: 276 YVIEVSLEA 284
            +IE  +  
Sbjct: 235 SLIEGVVAE 243

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 84.6 bits (210), Expect = 8e-18
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 17/200 (8%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-----RMLRKESCYIMQD 115
           I+G SG+GK+ LL ++    RP      SG + ++   L        R LR++   I Q 
Sbjct: 37  IIGYSGAGKSTLLRLINLLERP-----TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH 91

Query: 116 -NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
            NLL    TV E+  VA  L+L     +   + +V  + + + +S   +     LSGGQK
Sbjct: 92  FNLLSSR-TVFEN--VAFPLELAGV-PKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK 147

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLL 233
           +R++IA  L +NP I+  DE T+ LD     ++++LL+D+    G  I+   H+    + 
Sbjct: 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VK 206

Query: 234 NMADYLYVLTEGYCTYQGTV 253
            + D + VL +G    +GTV
Sbjct: 207 RICDRVAVLDQGRLVEEGTV 226

Length = 339

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 15/206 (7%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
             K +L DIS      E+   LGP+G+GKT  + I+ G  +P     +SG I  +    Q
Sbjct: 11  GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----DSGEITFDGKSYQ 65

Query: 101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
                LR+    I        L T  E+L + A L          ++ ++D + D + + 
Sbjct: 66  KNIEALRRIGALIEAPGFYPNL-TARENLRLLARLLGI-------RKKRIDEVLDVVGLK 117

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
                  K  S G K+RL IAL LL NP ++ LDEPT GLD      L +L+  +  QG 
Sbjct: 118 DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI 177

Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
            ++ + H  S  +  +AD + ++ +G
Sbjct: 178 TVLISSHLLS-EIQKVADRIGIINKG 202

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S S  +K +L D+S       ++ I+GP+G+GK+ LL +++   R  K ++    I+  E
Sbjct: 8   SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS---RLLKKDSGEITIDGLE 64

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR----KAKESKVDSI 152
                 + L K+   + Q+N +   LTV + +           YS+    K     ++  
Sbjct: 65  LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF-----PYSQGRLTKEDRRIINEA 119

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            + L +    +     LSGGQ++R  IA+ L  +   + LDEP   LD  ++  ++K+LR
Sbjct: 120 IEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179

Query: 213 DMAHQ-GTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
            +A + G  I+  LH      +N A    D++  L  G    QG+ 
Sbjct: 180 RLADELGKTIVVVLHD-----INFASCYSDHIVALKNGKVVKQGSP 220

Length = 252

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 34/245 (13%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRL-- 99
            LKDIS      E   +LGPSG GKT LL I+AG  R       +G I       TRL  
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----TAGTIYQGGRDITRLPP 73

Query: 100 --QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
             +D+ ++        Q   L   LTV ++  +A  LK      R     +V  + D + 
Sbjct: 74  QKRDYGIV-------FQSYALFPNLTVADN--IAYGLK-NRGMGRAEVAERVAELLDLVG 123

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           +   +      LSGGQ++R+++A  L ++P ++ LDEP + LD     +L   +R +  +
Sbjct: 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183

Query: 218 -G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPAD 275
            G T I+ T  Q  A  L+MAD + V+  G     GT P  +       Y+ P+    AD
Sbjct: 184 LGVTTIMVTHDQEEA--LSMADRIVVMNHGVIEQVGT-PQEI-------YRHPATPFVAD 233

Query: 276 YVIEV 280
           +V EV
Sbjct: 234 FVGEV 238

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 22/192 (11%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR------MLRKESCYIMQ 114
           + GPSGSGKT L++++AG  RP +     G IE+N   L D          ++   Y+ Q
Sbjct: 29  LFGPSGSGKTSLINMIAGLTRPDE-----GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83

Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
           D  L          TV  +L+ G   S +A+    D +   L I    +     LSGG+K
Sbjct: 84  DARLFP------HYTVRGNLRYGMWKSMRAQ---FDQLVALLGIEHLLDRYPGTLSGGEK 134

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLL 233
           +R++I   LL+ P ++ +DEP   LD      ++  L  +       I+   H     +L
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVL 193

Query: 234 NMADYLYVLTEG 245
            +AD + VL  G
Sbjct: 194 RLADRVVVLENG 205

Length = 352

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 81.0 bits (200), Expect = 5e-17
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 13/210 (6%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           SY  K +  L+D+S    S EL V+LGPSG GKT LL+++AG+  P +     G I++N 
Sbjct: 12  SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR-----GSIQLNG 66

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
            R++       E   + Q+  L   L V ++  VA  L+L     +  +      +   +
Sbjct: 67  RRIEGPG---AERGVVFQNEALLPWLNVIDN--VAFGLQLRG-IEKAQRREIAHQMLALV 120

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            +   ++     LSGG ++R+ IA  L   P ++ LDEP   LD L    + +LL D+  
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180

Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEG 245
           + G  ++   H    +L  +A  L VL+ G
Sbjct: 181 ETGKQVLLITHDIEEALF-LATRLVVLSPG 209

Length = 259

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 24/227 (10%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + SY     + LK++S      E   ILG +GSGK+ +  IL G  +P+     SG I+I
Sbjct: 14  SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-----SGEIKI 68

Query: 95  NETRLQDH--RMLRKESCYIMQ--DNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKV 149
           +   +     + +RK+   I Q  DN  Q +  TVE+   +A  L+   +   K  +  +
Sbjct: 69  DGITISKENLKEIRKKIGIIFQNPDN--QFIGATVEDD--IAFGLE-NKKVPPKKMKDII 123

Query: 150 DSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
           D +A  + +   ++ L K   +LSGGQK+R++IA  L  NP II  DE T+ LD      
Sbjct: 124 DDLAKKVGM---EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180

Query: 207 LVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           + K++ D+       +I   H    ++L  AD + V +EG    QG 
Sbjct: 181 IKKIMVDLRKTRKKTLISITHDMDEAIL--ADKVIVFSEGKLIAQGK 225

Length = 271

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 31/228 (13%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY------------RRPKKTETNSG 90
           K IL D+S      E   I+GP+G+GKT LL +L G             RR  K ET   
Sbjct: 44  KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF- 102

Query: 91  YIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES--K 148
             E+        + +   S  + +   ++E  TV + +       +G        E    
Sbjct: 103 --ELR-------KRIGLVSSELHERFRVRE--TVRDVVLSGFFASIGIYQEDLTAEDLAA 151

Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
              + + L      +     LS G+++R+ IA  L+ +P ++ LDEP  GLD +    L+
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211

Query: 209 KLLRDMA---HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
             L ++A       ++  T H     +     +  +L EG    QG +
Sbjct: 212 NRLEELAASPGAPALLFVT-HHA-EEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 27/207 (13%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQDHRM---LRKESCYIMQ 114
           I+G SGSGK+ L   L G        T SG + ++      L +  M     K    I Q
Sbjct: 40  IVGESGSGKSTLALALMGLLPEGGRIT-SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98

Query: 115 DN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---- 168
           D    L  ++T+ + +  A  L      SR     +   + + + +    +   +     
Sbjct: 99  DPMTSLNPVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLP---DPERRDRYPH 153

Query: 169 -LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTLH 226
            LSGG ++R+ IA+ L   P ++  DEPTT LD      ++ LL+D     G  ++   H
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213

Query: 227 QPSASLLNMADYLYVLTEGYCTYQGTV 253
                +  +AD + V+      Y+G +
Sbjct: 214 DLGV-VAELADRVVVM------YKGEI 233

Length = 539

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 26/176 (14%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYIMQD 115
           I GP+G+GKT LL ILAG  RP     ++G +      I   R + H+ L     Y+   
Sbjct: 32  IEGPNGAGKTSLLRILAGLARP-----DAGEVLWQGEPIRRQRDEYHQDL----LYLGHQ 82

Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL---SISTCKNTLTKHLSGG 172
             ++  LT  E+L      +L             +++ ++L    ++  ++   + LS G
Sbjct: 83  PGIKTELTALENLRFYQ--RLHGPGDD-------EALWEALAQVGLAGFEDVPVRQLSAG 133

Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           Q++R+++A   L+   +  LDEP T +D      L  LL   A QG M+I T HQ 
Sbjct: 134 QQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189

Length = 204

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 15/220 (6%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
             D+L ++S      E+  I+G SGSGK+ LL +L G   P   +       +++     
Sbjct: 21  QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80

Query: 102 HRMLR-KESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
              LR ++  +I Q  +LL +   +E    VA  L +G +   +     ++ +A ++ + 
Sbjct: 81  KAELRNQKLGFIYQFHHLLPDFTALE---NVAMPLLIGKKKPAEINSRALEMLA-AVGLE 136

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQG 218
              N     LSGG+++R++IA  L++NP ++  DEPT  LD  NA ++ +LL ++   QG
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196

Query: 219 TMIICTLHQPSASLLNMADYLYVLTE---GYCTYQGTVPG 255
           T  +   H      L +A  +    E   G  T + ++ G
Sbjct: 197 TAFLVVTHD-----LQLAKRMSRQLEMRDGRLTAELSLMG 231

Length = 233

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S+S   + I+  +        L+ +LGP+GSGK+ LL +LAG  RP     +   +++  
Sbjct: 8   SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL-- 65

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDS--- 151
                H + R+     +   L+++       LTV   + LG     S  A +S  D+   
Sbjct: 66  -----HGLSRRARARRVA--LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118

Query: 152 ---IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
              +A +         ++  LSGG+++R+ +A  L   P ++ LDEPT  LD       +
Sbjct: 119 DRALARTELSHLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177

Query: 209 KLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTVPGLV 257
            L+R++A  G  ++  LH      LN+A    D++ VL  G     G  P  V
Sbjct: 178 ALVRELAATGVTVVAALHD-----LNLAASYCDHVVVLDGGRVVAAGP-PREV 224

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 49/219 (22%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           + SY  + + +LK++S      E   +LG SGSGK+ LL +L G  +P       G I +
Sbjct: 7   SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----QQGEITL 61

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           +   + D             +  L  L++V   L    +L     +              
Sbjct: 62  DGVPVSDL------------EKALSSLISV---LNQRPYL-----FD------------- 88

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
               +T +N L +  SGG+++RL++A  LL +  I+ LDEPT GLD +    L+ L+ ++
Sbjct: 89  ----TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144

Query: 215 AHQGTMIICTLHQPSASLLNM--ADYLYVLTEGYCTYQG 251
               T+I  T H     L  +   D +  L  G    QG
Sbjct: 145 LKDKTLIWITHH-----LTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 36/215 (16%)

Query: 45  ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
            L  +S     G F +     +LGPSG GKT LL ++AG+  P      SG I ++   +
Sbjct: 15  ALDGVSLDIKEGEFFT-----LLGPSGCGKTTLLRLIAGFETP-----TSGEILLDGKDI 64

Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
            +    ++    + Q+  L   LTV E+  +A  L+L  +  +   + +V    D + + 
Sbjct: 65  TNLPPHKRPVNTVFQNYALFPHLTVFEN--IAFGLRL-KKLPKAEIKERVAEALDLVQLE 121

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA---- 215
              N     LSGGQ++R++IA  L++ P ++ LDEP   LD        KL +DM     
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL-------KLRKDMQLELK 174

Query: 216 --HQG---TMIICTLHQPSASLLNMADYLYVLTEG 245
              +    T +  T  Q  A  L M+D + V+ +G
Sbjct: 175 RLQKELGITFVFVTHDQEEA--LTMSDRIAVMNKG 207

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 15/206 (7%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L DIS    S EL  +LGPSG+GK+ LL I+AG   P     ++G I +N   L D   L
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----DAGRIRLNGRVLFDVSNL 72

Query: 106 RKES---CYIMQDNLLQELLTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSISTC 161
                   ++ Q   L   +TV ++  +A  LK+  +  S     ++V+ +   + +   
Sbjct: 73  AVRDRKVGFVFQHYALFPHMTVADN--IAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GT 219
            +     LSGGQ++R+++A  L   P ++ LDEP   LD      L + LR + H   G 
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL-HDRLGV 189

Query: 220 MIICTLHQPSASLLNMADYLYVLTEG 245
             +   H      L +AD + VL +G
Sbjct: 190 TTVFVTHDQ-EEALELADRVVVLNQG 214

Length = 345

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 14/205 (6%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L D+S    S EL  +LGPSGSGKT LL ++AG  RP     +SG I        D  + 
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----DSGTILFGGEDATDVPVQ 72

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK---ESKVDSIADSLSISTCK 162
            +   ++ Q   L   +TV ++  VA  L++  +  R  +    +KV  +   + +    
Sbjct: 73  ERNVGFVFQHYALFRHMTVFDN--VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TM 220
           +     LSGGQ++R+++A  L   P ++ LDEP   LD      L + LR +  +   T 
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190

Query: 221 IICTLHQPSASLLNMADYLYVLTEG 245
           +  T  Q  A  L +AD + V+ +G
Sbjct: 191 VFVTHDQEEA--LEVADRVVVMNKG 213

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 42/244 (17%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F++++++   YD        + +LKD+S    + +   I+GPSGSGK+ +L +L  +R  
Sbjct: 3   FENVTFA---YDPG------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRF- 50

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-- 138
              + +SG I I+   +++  +  LR+    + QD       TV  + T+  +++ G   
Sbjct: 51  --YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQD-------TVLFNDTIGYNIRYGRPD 101

Query: 139 ----QYSRKAKESKV-DSIADSLSISTCKNTL-----TKHLSGGQKKRLSIALELLSNPS 188
               +    AK +++ D I   +      +T+      K LSGG+K+R++IA  +L NP 
Sbjct: 102 ATDEEVIEAAKAAQIHDKI---MRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPP 157

Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248
           I+ LDE T+ LD      +   LRD++   T I+   H+ S +++N AD + VL +G   
Sbjct: 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA-HRLS-TIVN-ADKIIVLKDGRIV 214

Query: 249 YQGT 252
            +GT
Sbjct: 215 ERGT 218

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 81.2 bits (201), Expect = 5e-16
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 23/225 (10%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           +Y  +    LK+ +      E   ILG SGSGK+ LL +LAG   P       G I +N 
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----QQGSITLNG 399

Query: 97  TRLQ--DHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
             +   D + LR+    + Q   L     T+ ++L +A       +     ++  ++ + 
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLANPDASDEELWAALQQVGLEKLL 457

Query: 154 DSLSISTCKNTLTK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           +S          T        LSGG+++RL++A  LL +  +  LDEPT GLD +    +
Sbjct: 458 ESAP----DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513

Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           + LL + A   T+++ T        L   D + VL  G    +GT
Sbjct: 514 LALLFEHAEGKTLLMVTHR---LRGLERMDRIIVLDNGKIIEEGT 555

Length = 573

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
                L DIS      E+  +LGP+G+GKT  + ++ G   P     +SG +  +   L 
Sbjct: 11  GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----DSGEVLFDGKPLD 65

Query: 101 D---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
               +R+      Y+ ++  L   + V + L   A LK      ++    ++D   + L 
Sbjct: 66  IAARNRI-----GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLE 117

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           +S   N   + LS G ++++     ++ +P ++ LDEP +GLD +N   L  ++R++A  
Sbjct: 118 LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177

Query: 218 GTMIICTLHQ 227
           G  +I + HQ
Sbjct: 178 GKTVILSTHQ 187

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDI 75
            +++S     +      +     LKD+S       LSV       I+G SG+GK+ L+  
Sbjct: 4   LKNVSK---VFGDTGGKVT---ALKDVS-------LSVPKGEIFGIIGRSGAGKSTLIRC 50

Query: 76  LAGYRRPKKTETNSGYIEINETRLQDH-----RMLRKESCYIMQD-NLLQELLTVEESLT 129
           + G  RP      SG + ++ T L        R  R+    I Q  NLL    TV E+  
Sbjct: 51  INGLERP-----TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR-TVFEN-- 102

Query: 130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI 189
           VA  L++     +   E +V  + + + +    +     LSGGQK+R+ IA  L +NP +
Sbjct: 103 VALPLEIAGV-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161

Query: 190 IFLDEPTTGLDYLNATNLVKLLRD 213
           +  DE T+ LD     +++ LLRD
Sbjct: 162 LLCDEATSALDPETTQSILALLRD 185

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 79.7 bits (196), Expect = 5e-16
 Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 17/235 (7%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +L D+S    + EL  ++G SG GKT LL  +AG+ +       +G I I +  L     
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA---AGLTGRIAIADRDLTHAPP 76

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
            ++    + Q+  L   L VE++  VA  L+          E   D++   + +      
Sbjct: 77  HKRGLALLFQNYALFPHLKVEDN--VAFGLRAQKMPKADIAERVADAL-KLVGLGDAAAH 133

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMII 222
           L   LSGG ++R++IA  +   P ++ LDEP + LD     N+ + +  +  +     I+
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193

Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
           C  H    +L  +AD   ++ +G     G    L        Y  P++   A+++
Sbjct: 194 CVTHDQDDALT-LADKAGIMKDGRLAAHGEPQAL--------YDAPADGFAAEFL 239

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 21/195 (10%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           ILK +  V    E   I+GPSGSGK+ LL +LAG   P     +SG + +    L  H++
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----SSGEVRLLGQPL--HKL 77

Query: 105 -------LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
                  LR     ++ Q   L   LT  E+  VA  L+L  + S  ++      +  ++
Sbjct: 78  DEDARAALRARHVGFVFQSFHLIPNLTALEN--VALPLELRGESSADSRAGAKALLE-AV 134

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA- 215
            +          LSGG+++R+++A      P ++F DEPT  LD      +  LL  +  
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194

Query: 216 -HQGTMIICTLHQPS 229
               T+++ T H P 
Sbjct: 195 ERGTTLVLVT-HDPQ 208

Length = 228

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 21/223 (9%)

Query: 38  YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           Y      IL +IS      E+  I+G SGSGK+ L  ++  +  P   E     ++ ++ 
Sbjct: 10  YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDL 66

Query: 98  RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS-- 155
            L D   LR++   ++Q+N+L        + ++  ++ L +      +  +   +A +  
Sbjct: 67  ALADPAWLRRQVGVVLQENVLF-------NRSIRDNIALADPGMSMERVIEAAKLAGAHD 119

Query: 156 --LSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
               +    +T+       LSGGQ++R++IA  L+ NP I+  DE T+ LDY +   +++
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179

Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            + D+    T+II   H+ S   +  AD + V+ +G    QG+
Sbjct: 180 NMHDICAGRTVIIIA-HRLST--VKNADRIIVMEKGRIVEQGS 219

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.6 bits (191), Expect = 9e-16
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 17/215 (7%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           LK I+      E++ ILG +G+GK+ L   L G  +P     +SG I  +   +   R  
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----SSGRILFDGKPIDYSRKG 76

Query: 105 ---LRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
              LR+    + Q  DN L      ++    A +LKL     RK    +VD+      I 
Sbjct: 77  LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK----RVDNALKRTGIE 132

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
             K+  T  LS GQKKR++IA  L+  P ++ LDEPT GLD +  + ++KLL +M  + G
Sbjct: 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192

Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
             II   H      L   D ++V+ EG    QG  
Sbjct: 193 LTIIIATHDIDIVPL-YCDNVFVMKEGRVILQGNP 226

Length = 283

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S+ +  + +L  +S  F + +++ ++G +GSGK+ LL +L  ++ P     + G I ++ 
Sbjct: 18  SFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----SEGEILLDA 72

Query: 97  TRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAA---HLKLGNQYSRKAKESKVDS 151
             L+    +   ++  Y+ Q     E +TV E + +     H  LG ++    +E KV+ 
Sbjct: 73  QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG-RFGAADRE-KVEE 130

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
               + +    + L   LSGG+++R  IA+ +  +   + LDEPT+ LD  +  +++ L+
Sbjct: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190

Query: 212 RDMAHQ-GTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGT 252
             ++ + G  +I  LH      +NMA    DYL  L  G    QGT
Sbjct: 191 HRLSQERGLTVIAVLHD-----INMAARYCDYLVALRGGEMIAQGT 231

Length = 265

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)

Query: 72  LLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELLTVEESL 128
           LL ++ G  +P      SG I ++          ++LRK    + QD  L   LTV E+L
Sbjct: 3   LLKLITGLLQP-----TSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57

Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-TKHLSGGQKKRLSIALELLSNP 187
                         K  +++ +   + + +    +      LSGGQK+R++IA  LL  P
Sbjct: 58  FFG--------LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKP 109

Query: 188 SIIFLDEPTT 197
            ++ LDEPT 
Sbjct: 110 KLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 18/149 (12%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML---RKESCYIM 113
           E   ILGPSG+GK+ LL+++AG+  P      SG + +N    QDH      R+    + 
Sbjct: 26  ERVAILGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNG---QDHTTTPPSRRPVSMLF 77

Query: 114 QDNLLQELLTVEESLTVAAH--LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
           Q+N L   LTV +++ +  +  LKL N   R+    K+ +IA  + I      L   LSG
Sbjct: 78  QENNLFSHLTVAQNIGLGLNPGLKL-NAAQRE----KLHAIARQMGIEDLLARLPGQLSG 132

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           GQ++R+++A  L+    I+ LDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161

Length = 232

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 24/221 (10%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRM 104
           L D+S      EL V++GP+G+GKT L+D++ G  RP++ E    G  ++  T+L +HR+
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDL--TKLPEHRI 78

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLK------LGNQYSRKAKESKVDSIADSLSI 158
            R       Q   + E LTV E+L +A +        L  +  R  +  ++D +  ++ +
Sbjct: 79  ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDELLATIGL 137

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
              ++ L   LS GQK+ L I + L  +P ++ LDEP  G+         +LL+ +A   
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GK 196

Query: 219 TMIICTLHQPSASLLNM------ADYLYVLTEGYCTYQGTV 253
             I+   H       +M      AD + VL EG    +G++
Sbjct: 197 HSILVVEH-------DMGFVREIADKVTVLHEGSVLAEGSL 230

Length = 249

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 46/232 (19%)

Query: 14  SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL 73
                  L  +D+S     Y        +  +L  +S      E   ILGPSGSGK+ LL
Sbjct: 328 VGLGKPTLELRDLSAG---YPG------APPVLDGVSLDLPPGERVAILGPSGSGKSTLL 378

Query: 74  DILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQD------NLLQELL--- 122
             LAG   P +     G + ++   +   D   +R+      QD       + + L    
Sbjct: 379 ATLAGLLDPLQ-----GEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR 433

Query: 123 ---TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQKKR 176
              T EE       + L +          + ++ D L        L +    LSGG+++R
Sbjct: 434 PDATDEELWAALERVGLADW---------LRALPDGLDTV-----LGEGGARLSGGERQR 479

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           L++A  LL++  I+ LDEPT  LD   A  L++ L   A  G  ++   H  
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 78.4 bits (194), Expect = 4e-15
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 53/209 (25%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLL 118
           I+G  GSGK+ LL +L G  +P       G + ++  + R  D   LR+   Y+ QD   
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQP-----TEGSVLLDGVDIRQIDPADLRRNIGYVPQDP-- 548

Query: 119 QELL--TVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSLSISTCKNTLTKH-- 168
             L   T+ +++       LG  Y+      R A+ + V                  H  
Sbjct: 549 -RLFYGTLRDNIA------LGAPYADDEEILRAAELAGVTEFVRR------------HPD 589

Query: 169 ------------LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
                       LSGGQ++ +++A  LL +P I+ LDEPT+ +D  +       L+    
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA 649

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEG 245
             T+++ T H+   SLL++ D + V+  G
Sbjct: 650 GKTLVLVT-HRT--SLLDLVDRIIVMDNG 675

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 74.1 bits (182), Expect = 5e-15
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +L +++      E+  ++GPSG GK+ LL  + G    + + T  G + +NE RL     
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT--GELWLNEQRLDMLPA 74

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
            +++   + QD LL   L+V ++L  A    L     R A  + ++     L  +  ++ 
Sbjct: 75  AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSG--LDGAFHQDP 132

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
            T  LSGGQ+ R+++   LL+ P  + LDEP + LD
Sbjct: 133 AT--LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166

Length = 213

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 77.9 bits (192), Expect = 5e-15
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 40/263 (15%)

Query: 3   SEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVIL 62
           SE    +   +    + +++  D+SYS        Y   S  IL DIS        + I+
Sbjct: 456 SEFINKKKRTELNNLNGDIVINDVSYS--------YGYGSN-ILSDISLTIKMNSKTTIV 506

Query: 63  GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQE 120
           G SGSGK+ L  +L G+ + +     SG I +N   L+  D   LR+   Y+ Q+  +  
Sbjct: 507 GMSGSGKSTLAKLLVGFFQAR-----SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF- 560

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--------CKNTLTKH---L 169
                 S ++  +L LG +      + ++ +  +   I           +  L++    +
Sbjct: 561 ------SGSILENLLLGAK--ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
           SGGQK+R+++A  LL++  ++ LDE T+ LD +    +V  L ++  +   II   H+ S
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRLS 670

Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
            +    +D + VL  G    QG+
Sbjct: 671 VA--KQSDKIIVLDHGKIIEQGS 691

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 30/214 (14%)

Query: 42  SKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
           SKDI  DI  G FV     V +GPSG GK+ LL ++AG       +  SG + I E R+ 
Sbjct: 19  SKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----DITSGDLFIGEKRMN 68

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-ESKVDSIADSLSIS 159
           D     +    + Q   L   L+V E+++    LKL    ++K +   +V+ +A+ L ++
Sbjct: 69  DVPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG--AKKEEINQRVNQVAEVLQLA 124

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-------YLNATNLVKLLR 212
              +   K LSGGQ++R++I   L++ PS+  LDEP + LD        +  + L K L 
Sbjct: 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL- 183

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
                 TMI  T  Q  A  + +AD + VL  G 
Sbjct: 184 ----GRTMIYVTHDQVEA--MTLADKIVVLDAGR 211

Length = 369

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 34/230 (14%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S+   ++  L D+S          +LGP+G+GK+ L  +L      +      G I +  
Sbjct: 8   SFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ-----EGQISVA- 61

Query: 97  TRLQDHRMLRKESCYIM-------QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
                   LR+     +       Q   L   L+V ++L   A L   +  SR    +++
Sbjct: 62  -----GHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL---HGLSRAEARARI 113

Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
             +   L ++   +   + L+GG ++R+ IA  LL  P+++ LDEPT GLD  +   +  
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173

Query: 210 LLRDMA-HQGTMIICTLH-----QPSASLLNMADYLYVLTEGYCTYQGTV 253
            +R +A  QG  ++   H     +    L+       VL  G     G  
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLV-------VLHRGRVLADGAA 216

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 8/207 (3%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           LK +S        + +LGP+G+GK+ LL  L G   P++        E+N    ++ + +
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA---ENEKWV 77

Query: 106 RKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
           R +   + QD   Q    TV + +     + +G    +   E +V+    ++ +   ++ 
Sbjct: 78  RSKVGLVFQDPDDQVFSSTVWDDVAFGP-VNMG--LDKDEVERRVEEALKAVRMWDFRDK 134

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
              HLS GQKKR++IA  L  +P +I LDEP   LD      L+++L  + +QG  +I  
Sbjct: 135 PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194

Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQG 251
            H    +    AD + VL EG    +G
Sbjct: 195 THDVDLA-AEWADQVIVLKEGRVLAEG 220

Length = 274

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-- 99
           +   L DI+      E  V+LGPSG+GK+ LL +L     P+    N      + ++   
Sbjct: 14  AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73

Query: 100 -QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
            +  R LR+    + Q   L   LTV+E+L  A    LG   S+    ++ + +   L +
Sbjct: 74  DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG--LSKDQALARAEKLLKRLRL 131

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
               +    HLSGGQ++R++IA  L+  P ++  DEPT  LD      +V +++++A  G
Sbjct: 132 KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191

Query: 219 -TMIICT 224
            T +I T
Sbjct: 192 ITQVIVT 198

Length = 242

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 24/211 (11%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET---RLQD 101
           +L DIS    S ++  +LGPSGSGKT LL I+AG          SG+I  + T   RL  
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-----HQTSGHIRFHGTDVSRL-- 69

Query: 102 HRMLRKESCYIMQDNLLQELLTVEES----LTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
           H   RK   ++ Q   L   +TV ++    LTV   L    + +  A ++KV  + + + 
Sbjct: 70  HARDRKVG-FVFQHYALFRHMTVFDNIAFGLTV---LPRRERPNAAAIKAKVTQLLEMVQ 125

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           ++   +     LSGGQK+R+++A  L   P I+ LDEP   LD      L + LR + H+
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL-HE 184

Query: 218 G---TMIICTLHQPSASLLNMADYLYVLTEG 245
               T +  T  Q  A  + +AD + V+++G
Sbjct: 185 ELKFTSVFVTHDQEEA--MEVADRVVVMSQG 213

Length = 353

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 17/195 (8%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S S   K ++  +S    S E   +LGP+G+GK+ +  ++ G   P     ++G I +  
Sbjct: 48  SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----DAGKITVLG 102

Query: 97  TRLQDH-RMLRKESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSI 152
             +    R+ R     + Q DNL  E  TV E+L V      G  +    +E +  + S+
Sbjct: 103 VPVPARARLARARIGVVPQFDNLDLEF-TVRENLLV-----FGRYFGMSTREIEAVIPSL 156

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLL 211
            +   + +  +     LSGG K+RL++A  L+++P ++ LDEPTTGLD  +A +L+ + L
Sbjct: 157 LEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWERL 215

Query: 212 RDMAHQGTMIICTLH 226
           R +  +G  I+ T H
Sbjct: 216 RSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 73.5 bits (180), Expect = 2e-14
 Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI------NETRL-QDHRMLRKES 109
           E+  +LGPSGSGK+ LL  L+G     K+     +IE+       E RL +D R  R  +
Sbjct: 31  EMVALLGPSGSGKSTLLRHLSGLITGDKSA--GSHIELLGRTVQREGRLARDIRKSRANT 88

Query: 110 CYIMQDNLLQELLTVEESLTVAAHLKLGNQ---------YSRKAKESKVDSIADSLSIST 160
            YI Q   L   L+V E++ + A   LG+          ++R+ K+  + ++   + +  
Sbjct: 89  GYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQRALQALT-RVGMVH 144

Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGT 219
             +     LSGGQ++R++IA  L+    +I  DEP   LD  +A  ++  LRD+  + G 
Sbjct: 145 FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI 204

Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            ++ TLHQ   + L   + +  L +G+  Y G+
Sbjct: 205 TVVVTLHQVDYA-LRYCERIVALRQGHVFYDGS 236

Length = 262

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 28/228 (12%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
           +LGPSG GKT LL +LAG+ +P     +SG I ++   + +     +    + Q   L  
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQP-----DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
            +TVEE+  VA  LK+  +  R   + +V      + +    +     LSGGQ++R+++A
Sbjct: 56  HMTVEEN--VAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112

Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKL----LRDMAHQ-G-TMIICTLHQPSASLLN 234
             L+  P I+ LDEP + LD      L       L+ +  Q G T +  T  Q  A  + 
Sbjct: 113 RALVFKPKILLLDEPLSALDK----KLRDQMQLELKTIQEQLGITFVFVTHDQEEA--MT 166

Query: 235 MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL 282
           M+D + ++ +G     GT   +        Y+ P+N   A ++ E+++
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEI--------YEEPANLFVARFIGEINV 206

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NE 96
            L DI+      E  V+LGPSG+GK+ LL +L     P+     SG + I          
Sbjct: 17  ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-----SGTLNIAGNHFDFSKT 71

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
              +  R LR+    + Q   L   LTV+++L  A    LG   S+    ++ + + + L
Sbjct: 72  PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG--LSKDQALARAEKLLERL 129

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            +    +    HLSGGQ++R++IA  L+  P ++  DEPT  LD      +V ++R++A 
Sbjct: 130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE 189

Query: 217 QG-TMIICT 224
            G T +I T
Sbjct: 190 TGITQVIVT 198

Length = 242

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 25/238 (10%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRL 99
           K+ILK ++      E+  I+GP+GSGK+ L   + G   PK   T  G I  +      L
Sbjct: 17  KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVT-EGEILFDGEDILEL 73

Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI- 158
                 R       Q  +    +T  + L  A + + G +        ++   A+ L + 
Sbjct: 74  SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD 133

Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAH 216
               +  + +  SGG+KKR  I   LL  P +  LDEP +GLD ++A  +V + +  +  
Sbjct: 134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALRE 192

Query: 217 QGTMIICTLHQPSASLLN--MADYLYVLTEGYCTYQGTV-----PGLVPYLSDFGYQC 267
           +G  ++   H     LL+    D ++VL      Y G +     P L   L + GY  
Sbjct: 193 EGRGVLIITHYQ--RLLDYIKPDKVHVL------YDGRIVKSGDPELAEELEEKGYDW 242

Length = 251

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 12/220 (5%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETR 98
           +S + ++DIS      E+   LG +G+GK+  L +L G   P      SG + +N  +  
Sbjct: 35  RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-----SGKVRVNGKDPF 89

Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
            +    LR     + Q   L   L   +SL V   +    +        ++D + + L +
Sbjct: 90  RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDL 146

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQ 217
                   + LS GQ+ R  +A  LL  P ++FLDEPT GLD     N+ + L++    +
Sbjct: 147 EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
              ++ T H     +  + D + ++ +G   + GT+  L 
Sbjct: 207 QATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245

Length = 325

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 74.6 bits (184), Expect = 4e-14
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 31/210 (14%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
           L+ +S      E   ++GPSG+GK+ LL++L G+  P       G I +N   L   D  
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----TEGSIAVNGVPLADADAD 392

Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
             R +  ++ Q   L          T+A +++L       A ++++    +   +     
Sbjct: 393 SWRDQIAWVPQHPFLFA-------GTIAENIRLA---RPDASDAEIREALERAGLDEFVA 442

Query: 164 TL-----TK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            L     T        LSGGQ +RL++A   L +  ++ LDEPT  LD      +++ LR
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVL 242
            +A   T+++ T H+   +L  +AD + VL
Sbjct: 503 ALAQGRTVLLVT-HRL--ALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K  L+DI+    S EL V+LGPSG GKT LL+++AG+   +      G I ++   ++  
Sbjct: 14  KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-----HGSITLDGKPVEGP 68

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
                E   + Q+  L     V+++  VA  L+L     +  +      +   + +   +
Sbjct: 69  ---GAERGVVFQNEGLLPWRNVQDN--VAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAE 122

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN----ATNLVKLLRDMAHQG 218
                 LSGGQ++R+ IA  L +NP ++ LDEP   LD        T L+KL ++   Q 
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182

Query: 219 TMI 221
            +I
Sbjct: 183 LLI 185

Length = 255

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 11/198 (5%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
               + +L  I       E+  I+GPSGSGKT LL  +    +P+      G I I+  R
Sbjct: 12  KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR 71

Query: 99  LQDH-----RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
                    R LR+   ++ Q+ NL      +E  +     +K      ++   ++   +
Sbjct: 72  SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK---GEPKEEATARAREL 128

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
              + ++  + +  + LSGGQ++R++IA  L   P +I  DEPT+ LD      ++  +R
Sbjct: 129 LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188

Query: 213 DMAHQG-TMIICTLHQPS 229
            +A +  TM+I T H+ S
Sbjct: 189 QLAQEKRTMVIVT-HEMS 205

Length = 250

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 34/240 (14%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F+++++S   YD      + K +LKDI+      E   I+GP+G+GKT L+++L  +  P
Sbjct: 5   FENVNFS---YD------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP 55

Query: 83  KKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
           +K     G I I+   ++D   + LR     ++QD  L        S T+  +++LG   
Sbjct: 56  QK-----GQILIDGIDIRDISRKSLRSMIGVVLQDTFLF-------SGTIMENIRLGRPN 103

Query: 141 SRK------AKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL 192
           +        AKE+        L     T       +LS G+++ L+IA  +L +P I+ L
Sbjct: 104 ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163

Query: 193 DEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           DE T+ +D      + + L  +    T II   H+ S ++ N AD + VL +G    +GT
Sbjct: 164 DEATSNIDTETEKLIQEALEKLMKGRTSIIIA-HRLS-TIKN-ADKILVLDDGKIIEEGT 220

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-------T 97
           +LK++S    + E   + GPSG+GK+ LL  L     P     +SG I +          
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----DSGRILVRHEGAWVDLA 77

Query: 98  RLQDHRML---RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           +     +L   RK   Y+ Q   L+ +  V  +L V A   L     R+A  ++   +  
Sbjct: 78  QASPREVLEVRRKTIGYVSQ--FLRVIPRVS-ALEVVAEPLLERGVPREAARARARELLA 134

Query: 155 SLSI-----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
            L+I          T     SGG+++R++IA   +++  I+ LDEPT  LD  N   +V+
Sbjct: 135 RLNIPERLWHLPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190

Query: 210 LLRDMAHQGTMIICTLHQP 228
           L+ +   +G  +I   H  
Sbjct: 191 LIAEAKARGAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 74.7 bits (183), Expect = 1e-13
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 53   FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI 112
            F   +++  LG +G+GKT  L IL G   P       G  +I ET L     +R+     
Sbjct: 953  FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLD---AVRQSLGMC 1008

Query: 113  MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
             Q N+L   LTV E +   A LK     S +  + +++++ +   +   +N   + LSGG
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGG 1065

Query: 173  QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
             +++LS+A+  + +  ++ LDEPT+G+D  +  ++  LL       T+I+ T H   A L
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125

Query: 233  LNMADYLYVLTEG--YCT 248
            L   D + ++++G  YC+
Sbjct: 1126 L--GDRIAIISQGRLYCS 1141

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 17/245 (6%)

Query: 40  IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG----YRRPKKTETNSGYIEIN 95
           I  K ILKDI+    +  +  I+GPSGSGK+ LL +L      Y    K +    Y   +
Sbjct: 20  INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79

Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT--VAAHLKLGNQYSRKAKESKVDSIA 153
             ++ D   LRKE   + Q       L++ +++   + +H     +  +K  E  +  + 
Sbjct: 80  IFQI-DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVG 138

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
               +    N+    LSGGQ++RL+IA  L   P ++ +DEPT+ +D +N+  + KL+ +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198

Query: 214 MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNP 273
           + ++  ++I + H P   +  +ADY+  L  G     G+        S+  +  P N   
Sbjct: 199 LKNEIAIVIVS-HNPQ-QVARVADYVAFLYNGELVEWGS--------SNEIFTSPKNELT 248

Query: 274 ADYVI 278
             YVI
Sbjct: 249 EKYVI 253

Length = 257

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 15/194 (7%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-N 95
           S S   K ++ D+S      E   +LGP+G+GK+ +  +L G   P     + G I +  
Sbjct: 11  SKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----DRGKITVLG 65

Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK--ESKVDSIA 153
           E      R+ R     + Q + L    TV E+L V      G  +    +  E+ + S+ 
Sbjct: 66  EPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLV-----FGRYFGMSTREIEAVIPSLL 120

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLR 212
           +   + +  +     LSGG K+RL++A  L+++P ++ LDEPTTGLD  +A +L+ + LR
Sbjct: 121 EFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWERLR 179

Query: 213 DMAHQGTMIICTLH 226
            +  +G  I+ T H
Sbjct: 180 SLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 26/193 (13%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGY-----IEINET 97
            +L +I       E+ VI+GPSGSGK+ LL      R   K E   SG      +++N+ 
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLL------RCINKLEEITSGDLIVDGLKVNDP 68

Query: 98  RLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
           ++ D R++R+E+  + Q   L   L  +E    V      G    R A + + +  A  L
Sbjct: 69  KV-DERLIRQEAGMVFQQFYLFPHLTALE---NVM----FGPLRVRGASKEEAEKQAREL 120

Query: 157 ----SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
                ++   +     LSGGQ++R++IA  L   P ++  DEPT+ LD      ++K+++
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180

Query: 213 DMAHQG-TMIICT 224
           D+A +G TM+I T
Sbjct: 181 DLAEEGMTMVIVT 193

Length = 240

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 48/215 (22%)

Query: 37  SYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNS 89
           S +   + +L+++S       L++       ++G +G+GK+ LL ILAG   P     +S
Sbjct: 10  SLAYGDRPLLENVS-------LTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----DS 57

Query: 90  GYIEIN----------ETRLQDHRMLRKESCYIMQDN-----LLQELLTVEESLTVAAHL 134
           G +             E  L   + +     Y+++       LL EL      L      
Sbjct: 58  GEVTRPKGLRVGYLSQEPPLDPEKTVLD---YVIEGFGELRELLAELEEAYALLADPDDE 114

Query: 135 KLGNQYSRKAK------ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS 188
            L    +   +      E++ +     L     ++     LSGG ++R+++A  LL  P 
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPD 173

Query: 189 IIFLDEPTTGLDYLNATN-LVKLLRDMAHQGTMII 222
           ++ LDEPT  LD L +   L   L+   + GT+I+
Sbjct: 174 LLLLDEPTNHLD-LESIEWLEDYLKR--YPGTVIV 205

Length = 530

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 71/228 (31%)

Query: 31  LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPK 83
           LYY         K  LKDI+      +++ ++GPSG GK+ LL       D++ G R   
Sbjct: 15  LYYGD-------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV-- 65

Query: 84  KTETNSGYIEINETRLQDHRM----LRKE-------------SCYI----------MQDN 116
                 G + ++   + D ++    LR+              S Y           ++D 
Sbjct: 66  -----EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDK 120

Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            L E+  VE SL  AA                 D + D L     K+ L   LSGGQ++R
Sbjct: 121 ELDEI--VESSLKKAALW---------------DEVKDRLH----KSALG--LSGGQQQR 157

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           L IA  L   P ++ +DEPT+ LD ++   + +L+ ++  + T++I T
Sbjct: 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205

Length = 253

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 11/232 (4%)

Query: 26  ISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT 85
           I +  + Y     S  +   L DI         + ++G +GSGK+ LL  L G  +P + 
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 86  ETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
           +   G I ++ T  Q   + +RK+   + Q     E    EE  TV   +  G Q     
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ---FPESQLFEE--TVLKDVAFGPQNFGIP 116

Query: 145 KESKVDSIADSLSISTCKNTLTK----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           KE      A+ L +    +   +     LSGGQ +R++IA  L   P ++ LDEPT GLD
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176

Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
                 +++L   +   G  ++   H     + + ADY+Y+L +G+    GT
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGT 227

Length = 288

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           EL VI+GP+G+GKT ++D++ G  RP +     G  ++  T L +H++ R       Q  
Sbjct: 29  ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKP 86

Query: 117 LLQELLTVEESLTVAAH-----LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
            + E LTV E+L +A                  ++ +++ + +++ ++   + L   LS 
Sbjct: 87  TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           GQK+ L I + L+ +P ++ LDEP  G+         +LL+ +A + ++++
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIE 93
           S++  ++ I  +IS      +++ I+GPSG GKT LL ++ G   P   E          
Sbjct: 14  SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPA 73

Query: 94  INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           ++ +RL     +RK    + Q   L   + V ++  VA  L+   Q       S V    
Sbjct: 74  MSRSRLYT---VRKRMSMLFQSGALFTDMNVFDN--VAYPLREHTQLPAPLLHSTVMMKL 128

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           +++ +      +   LSGG  +R ++A  +   P +I  DEP  G D +    LVKL+ +
Sbjct: 129 EAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188

Query: 214 MAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
           +    G   +   H     +L++AD+ Y++ +      G+   L
Sbjct: 189 LNSALGVTCVVVSHD-VPEVLSIADHAYIVADKKIVAHGSAQAL 231

Length = 269

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%)

Query: 35  THSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
              Y     D  +LK +S      E+  I+G SGSGK+ LL +L G   P      SG +
Sbjct: 8   GKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----TSGEV 62

Query: 93  EINETRLQ-----DHRMLRKESC-YIMQ-DNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
             N   L      +   LR +   +I Q  +LL +   +E    VA  L +G + S K  
Sbjct: 63  LFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALE---NVAMPLLIGKK-SVKEA 118

Query: 146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
           + +   + + + +    N     LSGG+++R++IA  L++ PS++  DEPT  LD  NA 
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178

Query: 206 NLVKLLRDM-AHQGTMIICTLHQP 228
            +  L+ ++     T  +   H  
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHDL 202

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 69.7 bits (170), Expect = 4e-13
 Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 44/258 (17%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKT----ETNSGY 91
           K +L  +S  F ++ ++ ++GP+GSGKT  L       D ++GYR          +   Y
Sbjct: 34  KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93

Query: 92  IEINETRLQDHRMLRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV 149
            ++ E R +   + ++ + + M   DN+L           V AH  +  +  R   ++++
Sbjct: 94  RDVLEFRRRVGMLFQRPNPFPMSIMDNVLA---------GVRAHKLVPRKEFRGVAQARL 144

Query: 150 ------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
                 D++ D LS S  +      LSGGQ++ L +A  L  NP ++ LDEPT+ LD   
Sbjct: 145 TEVGLWDAVKDRLSDSPFR------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198

Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
              + + +R +A + T+II T +   A+   ++D   +  +G    +G    L       
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHNLAQAA--RISDRAALFFDGRLVEEGPTEQL------- 249

Query: 264 GYQCPSNYNPADYVIEVS 281
            +  P +   A YV  +S
Sbjct: 250 -FSSPKHAETARYVAGLS 266

Length = 276

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 68.4 bits (167), Expect = 6e-13
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E+  ++G +G+GKT LL  L G   P+ T     +   + T  Q  +++R+    + +  
Sbjct: 32  EIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGR 89

Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            +   +TVEE+L +       +Q+  + K   V  +   L     +   T  +SGG+++ 
Sbjct: 90  RVFSRMTVEENLAMGGFFAERDQFQERIK--WVYELFPRLHERRIQRAGT--MSGGEQQM 145

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           L+I   L+S P ++ LDEP+ GL  +    +   +  +  QG M I  + Q +   L +A
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG-MTIFLVEQNANQALKLA 204

Query: 237 DYLYVLTEGYCTYQGT 252
           D  YVL  G+   + T
Sbjct: 205 DRGYVLENGHVVLEDT 220

Length = 237

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
           + +++      E  V++GPSGSGKT  + ++      +  E  SG I I+  + R QD  
Sbjct: 17  VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-----RLIEPTSGEIFIDGEDIREQDPV 71

Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD--SLSISTC 161
            LR++  Y++Q   L   +TVEE+  +A   KL  ++ ++    + D +     L  +  
Sbjct: 72  ELRRKIGYVIQQIGLFPHMTVEEN--IALVPKL-LKWPKEKIRERADELLALVGLDPAEF 128

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
            +     LSGGQ++R+ +A  L ++P ++ +DEP   LD +    L +  + +  + G  
Sbjct: 129 ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT 188

Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           I+   H    +   +AD + ++  G     GT
Sbjct: 189 IVFVTHDIDEAFR-LADRIAIMKNGEIVQVGT 219

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.3 bits (167), Expect = 7e-13
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 21/196 (10%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           SYS   K+ILKDIS  F    +  I+GPSG+GK+ L+ ++     P  TE   G I I+ 
Sbjct: 10  SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TE---GSILIDG 64

Query: 97  TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
             ++   +  LR++   + Q   L E  TV++++     LK          E  VD    
Sbjct: 65  VDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLK---------GEKNVDVEYY 114

Query: 155 SLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
              +   K   T+   +LSGG+ +R+SIA  L +NP ++ LDEPT+ LD  +   + +L+
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174

Query: 212 RDMAHQ-GTMIICTLH 226
             + ++    +I   H
Sbjct: 175 VKLKNKMNLTVIWITH 190

Length = 241

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 68.3 bits (167), Expect = 8e-13
 Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 34  DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           D   Y  K K  L  +S  F   E++ ++GPSGSGK+ LL  +          T +G I 
Sbjct: 10  DLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68

Query: 94  INETRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
            N   +   R     LRKE   + Q  N     +++ E+  V   L+L     ++  +  
Sbjct: 69  YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP--MSIYEN--VVYGLRLKGIKDKQVLDEA 124

Query: 149 VDSIADSLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
           V+      SI    K+ L      LSGGQ++R+ IA  L ++P II LDEPT+ LD ++A
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184

Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSAS 231
             + + L  +    TM++ T     AS
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211

Length = 252

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
           ++LK IS    + E+  I+G SGSGK+ L++IL    +P          ++         
Sbjct: 22  EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81

Query: 104 MLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
            LR+E   +I Q   L   LT  +++ V A +  G    RK +  +   +   L +    
Sbjct: 82  QLRREHFGFIFQRYHLLSHLTAAQNVEVPA-VYAGL--ERKQRLLRAQELLQRLGLEDRV 138

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMI 221
                 LSGGQ++R+SIA  L++   +I  DEPT  LD  +   ++ +L  +  +G T+I
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198

Query: 222 ICTLHQP 228
           I T H P
Sbjct: 199 IVT-HDP 204

Length = 648

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 13/226 (5%)

Query: 29  SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88
            AL  +  + S   K  + +IS      E+  +LGP+G+GKT    ++ G   P      
Sbjct: 1   MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----T 55

Query: 89  SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
            G I  N   L     ++    Y+ ++  L   +TVE+ L   A LK      +   + K
Sbjct: 56  EGEITWNGGPLSQE--IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKK 110

Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
           + +  + L I   K    K LS G ++++     ++  P ++ LDEP +GLD +N   L 
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170

Query: 209 KLLRDMAHQGTMIICTLHQPS-ASLLNMADYLYVLTEGYCTYQGTV 253
             + ++  +G  II + H+      L   D L +L +G     GTV
Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEEL--CDRLLMLKKGQTVLYGTV 214

Length = 300

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-- 99
            K  L  +S      +   ++G +G+GK+ LL+ +AG  +P      SG I I+   +  
Sbjct: 18  EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----TSGQILIDGVDVTK 72

Query: 100 --QDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
                R       +  QD L      LT+EE+L +A         S    E +  S  + 
Sbjct: 73  KSVAKRANLLARVF--QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130

Query: 156 LSISTCKNTLTKHL-------SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           L+       L   L       SGGQ++ LS+ +  L  P I+ LDE T  LD
Sbjct: 131 LARL--GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180

Length = 263

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 70.4 bits (173), Expect = 1e-12
 Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 31/225 (13%)

Query: 5   EAELQDLKKSPRKHFNLLFQDISYSALYYDTH-----SYSI-KSKDILKDISGVFVSKEL 58
           EA L + +                  L          S      + +LKD+S      + 
Sbjct: 291 EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDR 350

Query: 59  SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL 118
             I+GP+G+GK+ LL +LAG     +    SG +++ ET          +  Y  Q    
Sbjct: 351 IAIVGPNGAGKSTLLKLLAG-----ELGPLSGTVKVGET---------VKIGYFDQHR-- 394

Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-NTLTKHLSGGQKKRL 177
                ++   TV   L    +      E +V +       +          LSGG+K RL
Sbjct: 395 ---DELDPDKTVLEELS---EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL 448

Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
            +A  LL  P+++ LDEPT  LD  +   L + L D   +GT+++
Sbjct: 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLL 491

Length = 530

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 33/225 (14%)

Query: 45  ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQ 100
           IL+ +S + V K E++ +LG +G GKT LL  L G    K     SG I ++    T+L 
Sbjct: 15  ILRGVS-LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-----SGSIRLDGEDITKLP 68

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESL-TVAAHLKLGNQYSRKAKESKV-DSIADSLSI 158
            H   R    Y+ Q   +   LTVEE+L T  A        +   +  K+ D I +   +
Sbjct: 69  PHERARAGIAYVPQGREIFPRLTVEENLLTGLA--------ALPRRSRKIPDEIYELFPV 120

Query: 159 STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LL 211
              K  L +    LSGGQ+++L+IA  L++ P ++ LDEPT G+      +++K    ++
Sbjct: 121 --LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ----PSIIKDIGRVI 174

Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
           R +  +G M I  + Q       +AD  YV+  G     G    L
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 67/219 (30%)

Query: 43  KDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
           K  ++D+S         V       I G  G+G+T+L + L G R P      SG I ++
Sbjct: 13  KGAVRDVS-------FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-----SGEITLD 60

Query: 96  E---TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
               TR      +R    Y+ +D   + L+                            S+
Sbjct: 61  GKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL-------------------------SV 95

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLL 211
           A+++        L+  LSGG ++++ +A  L  +P ++ LDEPT G+D + A   + +L+
Sbjct: 96  AENI-------ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVD-VGAKAEIYRLI 147

Query: 212 RDMAHQGTMIICTLHQPSAS-----LLNMADYLYVLTEG 245
           R++A  G  ++        S     LL + D + V+ EG
Sbjct: 148 RELADAGKAVLL------ISSELDELLGLCDRILVMYEG 180

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 24/213 (11%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
           K  L+ IS    + E   I+GPSGSGK+ L  ++ G   P      SG + ++  + +  
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-----SGSVRLDGADLKQW 385

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KLG-NQYSRKAKESKVDSIADSLSI 158
           D     K   Y+ QD    EL       TVA ++ + G N    K  E+   +    L +
Sbjct: 386 DRETFGKHIGYLPQD---VELF----PGTVAENIARFGENADPEKIIEAAKLAGVHELIL 438

Query: 159 STCKNTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
                  T        LSGGQ++R+++A  L  +P ++ LDEP + LD      L   ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
            +  +G  ++   H+P  SLL   D + VL +G
Sbjct: 499 ALKARGITVVVITHRP--SLLGCVDKILVLQDG 529

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 22/223 (9%)

Query: 40  IKSKDI---------LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           I +KD+         L  IS  F  KEL+ ++GPSG GK+  L  L       +    +G
Sbjct: 5   ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG 64

Query: 91  YIEINETRLQDHRM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
            I+     +   +M    LRKE   + Q          +    VA  LK+     ++  +
Sbjct: 65  EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYD---NVAYGLKIAGVKDKELID 121

Query: 147 SKVD-SIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
            +V+ S+  +      K+ L ++    SGGQ++R+ IA  L   P ++ LDEPT+ LD +
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181

Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
           +++ + + L ++ HQ T I+ T +   A    ++D    L  G
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHNLQQAG--RISDQTAFLMNG 222

Length = 251

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 30/217 (13%)

Query: 56  KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ---DHRMLRKESCYI 112
           +E+  ++GP+G+GKT + + L G+ +P       G I +    ++    H++ R      
Sbjct: 31  QEIVSLIGPNGAGKTTVFNCLTGFYKP-----TGGTILLRGQHIEGLPGHQIARMGVVRT 85

Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQY---------SRKAKESKVDSIA---DSLSIST 160
            Q   L   +TV E+L VA H +L              R+A+   +D  A   + + +  
Sbjct: 86  FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE 145

Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL-----DYLNATNLVKLLRDMA 215
             N    +L+ GQ++RL IA  +++ P I+ LDEP  GL       L+   L+  LR+  
Sbjct: 146 HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE--LIAELRN-- 201

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
                ++   H     ++ ++D +YV+ +G     GT
Sbjct: 202 EHNVTVLLIEHDMKL-VMGISDRIYVVNQGTPLANGT 237

Length = 255

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 11/212 (5%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRM 104
           L D++        +  +G +GSGK+ ++ +L G   P +         I + ++ +D + 
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
           +RK+   + Q     E    EE  TV   +  G Q    ++E       + L++     +
Sbjct: 83  IRKKVGLVFQ---FPESQLFEE--TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES 137

Query: 165 LTK----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
           L +     LSGGQ +R++IA  L   P I+ LDEPT GLD      L+ L + + HQ  M
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGM 196

Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            I  +      + N AD++YVL +G     G 
Sbjct: 197 TIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228

Length = 280

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 14/206 (6%)

Query: 34  DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           D H +  K  + LK I   F   E++ ++GPSG GK+  L  L          T +G + 
Sbjct: 10  DVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68

Query: 94  INETRL----QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
           +    +    +D   LRK+   + Q  N      ++ E++     L  G +      E+ 
Sbjct: 69  LRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP--FSIYENVIYGLRLA-GVKDKAVLDEAV 125

Query: 149 VDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
             S+  +      K+ L +    LSGGQ++R+ IA  L   P +I LDEPT+ LD +++T
Sbjct: 126 ETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISST 185

Query: 206 NLVKLLRDMAHQGTMIICT--LHQPS 229
            +  +L ++  Q T+I+ T  +HQ S
Sbjct: 186 QIENMLLELRDQYTIILVTHSMHQAS 211

Length = 252

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 65.2 bits (160), Expect = 4e-12
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 42/213 (19%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
             S+  K+ILK ++      E+  ++GP+GSGK+ L   + G         +  Y     
Sbjct: 7   HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG---------HPKYEVTEG 57

Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
           E   +               ++    L  EE       + L  QY    +   V   AD 
Sbjct: 58  EILFKGE-------------DITD--LPPEER--ARLGIFLAFQYP--PEIPGV-KNADF 97

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
           L        + +  SGG+KKR  I   LL  P +  LDEP +GLD      + +++  + 
Sbjct: 98  L------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151

Query: 216 HQGT-MIICTLHQPSASLLNM--ADYLYVLTEG 245
            +G  ++I T +Q    LL+    D ++VL +G
Sbjct: 152 EEGKSVLIITHYQ---RLLDYIKPDRVHVLYDG 181

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 11/200 (5%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTET-----NSGYIEINETRLQDHRMLRKESCYIMQD 115
           I+G SGSGKT LL  ++G   P          +    ++      + R L +     +  
Sbjct: 37  IVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96

Query: 116 NLLQEL-LTVEESLTVAAHL-KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
           N    L + V     +   L  +G ++    +    D + +        + L +  SGG 
Sbjct: 97  NPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156

Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSAS 231
           ++RL IA  L++ P ++F+DEPT GLD      L+ LLR +       ++I T     A 
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216

Query: 232 LLNMADYLYVLTEGYCTYQG 251
           LL  AD L V+ +G     G
Sbjct: 217 LL--ADRLMVMKQGQVVESG 234

Length = 258

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 13/174 (7%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           EL  +LGP+G+GKT LL  + G   P K     G +++            +   Y+ Q +
Sbjct: 7   ELLGLLGPNGAGKTTLLRAILGLIPPAK-----GTVKVAG---ASPGKGWRHIGYVPQRH 58

Query: 117 LLQELLTVEESLTV----AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
                  +  + TV      H+    +    A  + V      + ++   +     LSGG
Sbjct: 59  EFAWDFPISVAHTVMSGRTGHIGWLRR-PCVADFAAVRDALRRVGLTELADRPVGELSGG 117

Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           Q++R+ +A  L + PS++ LDEP TGLD      L +L  ++A  GT I+ T H
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 20/228 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK-------------KTETNSGY 91
            L +IS  F   ++  I+G SGSGK+ L+    G  + K             K   +   
Sbjct: 41  ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100

Query: 92  IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
                 ++++ + LR+    + Q    Q      E   +   + LG + S   K +K   
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYL 160

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
               L  S  + +    LSGGQK+R++IA  L   P I+  DEPT GLD      +++L+
Sbjct: 161 NKMGLDDSYLERS-PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219

Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259
            D       +    H     +L +AD + V+ +G     GT     PY
Sbjct: 220 LDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTGT-----PY 261

Length = 320

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 39/204 (19%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYI--- 92
           K+ LK+I+      +++ ++GPSG GK+ LL       D++ G R         G +   
Sbjct: 14  KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI-------EGKVLFD 66

Query: 93  --EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV- 149
             +I + ++    + R+      + N     +++ ++  +A   +L     +K  +  V 
Sbjct: 67  GQDIYDKKIDVVELRRRVGMVFQKPNPF--PMSIYDN--IAYGPRLHGIKDKKELDEIVE 122

Query: 150 ---------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
                    D + D L      + L   LSGGQ++RL IA  L   P ++ LDEPT+ LD
Sbjct: 123 ESLKKAALWDEVKDRLH----DSALG--LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176

Query: 201 YLNATNLVKLLRDMAHQGTMIICT 224
            +    + +L++++  + T++I T
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVT 200

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 17/212 (8%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---H 102
           LK ++      E   ++G SG GK+ LL++++G  +P      SG + +   ++ +    
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----TSGGVILEGKQITEPGPD 55

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           RM+      + Q+  L   LTV E++ +A    L    S+  + + V+     + ++   
Sbjct: 56  RMV------VFQNYSLLPWLTVRENIALAVDRVL-PDLSKSERRAIVEEHIALVGLTEAA 108

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMI 221
           +     LSGG K+R++IA  L   P ++ LDEP   LD L   NL  +L++        +
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168

Query: 222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           +   H    +LL ++D + +LT G     G +
Sbjct: 169 LMVTHDVDEALL-LSDRVVMLTNGPAANIGQI 199

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH- 102
           ++LK +S    + ++  I+G SGSGK+  L  +    +P +         IN  R +D  
Sbjct: 19  EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78

Query: 103 ---------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
                    R+LR     + Q   L   +TV E++  A    LG     +A+E  V  +A
Sbjct: 79  LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ-EARERAVKYLA 137

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
                   +     HLSGGQ++R+SIA  L   P ++  DEPT+ LD      ++++++ 
Sbjct: 138 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197

Query: 214 MAHQG-TMIICT 224
           +A +G TM++ T
Sbjct: 198 LAEEGKTMVVVT 209

Length = 257

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 28/207 (13%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRMLRKESCYIMQ-DNLL 118
           +LGP+G+GKT  L +L G   P     ++G I +  E      R  R+    + Q DNL 
Sbjct: 38  LLGPNGAGKTTTLRMLLGLTHP-----DAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92

Query: 119 QELLTVEESLTV-AAHLKLGNQYSRKA-----KESKVDSIADSLSISTCKNTLTKHLSGG 172
            +  TV E+L V   +  L    +R       + +K+++ AD+             LSGG
Sbjct: 93  PDF-TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---------VGELSGG 142

Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLH-QPSA 230
            K+RL++A  L+++P ++ LDEPTTGLD   A +L+ + LR +  +G  I+ T H    A
Sbjct: 143 MKRRLTLARALVNDPDVLVLDEPTTGLD-PQARHLMWERLRSLLARGKTILLTTHFMEEA 201

Query: 231 SLLNMADYLYVLTEGYCTYQGTVPGLV 257
             L   D L V+ EG    +G    L+
Sbjct: 202 ERL--CDRLCVIEEGRKIAEGAPHALI 226

Length = 306

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 19/169 (11%)

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-LQDHRMLRKESCYIMQDNLLQE 120
           LGP+G+GK+  + I+ GY  P     +SG +++     LQ+ + +++   Y+ + N L  
Sbjct: 34  LGPNGAGKSTTMKIITGYLPP-----DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-----LSGGQKK 175
            + V E L   A +        +  + +V+ +     I        +H     LS G ++
Sbjct: 89  DMYVREYLQFIAGI---YGMKGQLLKQRVEEM-----IELVGLRPEQHKKIGQLSKGYRQ 140

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           R+ +A  L+ +P ++ LDEPTTGLD      +  +++++    T+I+ T
Sbjct: 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 16/201 (7%)

Query: 58  LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC----YIM 113
            + I+GP+G GK+ LL  L+    P       G++ ++   +Q      KE       + 
Sbjct: 35  FTAIIGPNGCGKSTLLRTLSRLMTPA-----HGHVWLDGEHIQ--HYASKEVARRIGLLA 87

Query: 114 QDNLLQELLTVEESLTVA--AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
           Q+      +TV+E +      H  L  ++ RK  E  V     +  I+   +     LSG
Sbjct: 88  QNATTPGDITVQELVARGRYPHQPLFTRW-RKEDEEAVTKAMQATGITHLADQSVDTLSG 146

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSA 230
           GQ++R  IA+ L    +I+ LDEPTT LD  +  +L++LL ++   +G  +   LH  + 
Sbjct: 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206

Query: 231 SLLNMADYLYVLTEGYCTYQG 251
           +    A +L  L EG    QG
Sbjct: 207 A-CRYASHLIALREGKIVAQG 226

Length = 265

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (7%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E  ++ G +G+GKT LL +LAG          SG I+I+          R +    M   
Sbjct: 38  EALLVQGDNGAGKTTLLRVLAGLLHV-----ESGQIQID-----GKTATRGDRSRFMA-- 85

Query: 117 LLQELLTVEESLTVAAHLK-LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
            L  L  ++  L+   +L  L   + R+AK+    ++A  + ++  ++TL + LS GQKK
Sbjct: 86  YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA-IVGLAGYEDTLVRQLSAGQKK 144

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
           RL++A   LS   +  LDEP   LD    T + +++      G   + T H   A+ 
Sbjct: 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201

Length = 214

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 5/220 (2%)

Query: 38  YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           +  + + +LK ++  F    ++ ++G +G GK+ L   L+G  RP+K         ++ +
Sbjct: 9   FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS 68

Query: 98  RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
           + +    LR++   + QD   Q   T  +S    +   LG   +   +  +VD     + 
Sbjct: 69  K-RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR--RVDEALTLVD 125

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
               ++   + LS GQKKR++IA  L+     + LDEPT GLD    T ++ ++R +  Q
Sbjct: 126 AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
           G  +I + H     +  ++D +YVL +G     G  PG V
Sbjct: 186 GNHVIISSHDIDL-IYEISDAVYVLRQGQILTHGA-PGEV 223

Length = 271

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 47  KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-----NSGYIEINETRLQD 101
           +D+S      E+  I+G SGSGK+ LL  LAG   P          +   +E+ +    +
Sbjct: 20  RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79

Query: 102 HRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHL-KLGNQYSRKAKESKVDSIADSLSIS 159
            R L +     +  N    L + V     +   L  +G ++    + +  D + +     
Sbjct: 80  RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP 139

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
           T  + L +  SGG ++RL IA  L++ P ++F+DEPT GLD      L+ LLR +    G
Sbjct: 140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199

Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
             +I   H    + L +A  L V+ +G     G
Sbjct: 200 LAVIIVTHDLGVARL-LAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 66.4 bits (163), Expect = 2e-11
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 49/229 (21%)

Query: 43  KDILKDISGVFVSKELSV----ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYIEIN 95
              ++D+S        +V    ILG +G   +G+T+L   L G R        SG I ++
Sbjct: 272 GGKVRDVS-------FTVRAGEILGIAGLVGAGRTELARALFGARPAS-----SGEILLD 319

Query: 96  ETRLQ--------DHRML-----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR 142
              ++           +      RK    ++  ++ + +     +L             R
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENI-----TLASLRRFSRRGLIDR 374

Query: 143 KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
           + + +  +     L I T         LSGG ++++ +A  L ++P ++ LDEPT G+D 
Sbjct: 375 RKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID- 433

Query: 202 LNATNLV-KLLRDMAHQGTMIICTLHQPSAS----LLNMADYLYVLTEG 245
           + A   + +L+R++A +G  I+       +S    LL ++D + V+ EG
Sbjct: 434 VGAKAEIYRLIRELAAEGKAILMI-----SSELPELLGLSDRILVMREG 477

Length = 500

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 21/219 (9%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
           LK ++      E+  +LG +G+GK+ L+ +L+G   P       G I IN       DH+
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----TKGTITINNINYNKLDHK 75

Query: 104 MLRKESCYIMQDNLLQEL-----LTVEESLTVAAHLK---LG-NQYSRKAKESKVDSIAD 154
           +  +    I    + QEL     LTV E+L +  HL     G N    +    +   +  
Sbjct: 76  LAAQLGIGI----IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL 131

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            + +    +    +LS   K+ L IA  L+ +  +I +DEPT+ L       L  ++  +
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191

Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
             +GT I+   H+  A +  + D   V+ +G     G V
Sbjct: 192 RKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMV 229

Length = 510

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 25/184 (13%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL------------QDHRMLRKE 108
           ++GPSGSGK+ +L IL           + G I++   +L             D + LR+ 
Sbjct: 31  LIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85

Query: 109 SCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
              I    Q   L    TV +++T A  L LG   +R   E +   + D + ++   + +
Sbjct: 86  RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG--MARAEAEKRAMELLDMVGLADKADHM 143

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIIC 223
              LSGGQ++R++IA  L   P ++  DE T+ LD      ++ ++R +A +   TM++ 
Sbjct: 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV 203

Query: 224 TLHQ 227
           T H+
Sbjct: 204 T-HE 206

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 32/219 (14%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--- 102
           +KD+S    + E+  I G +G+G+++L++ ++G R+P      SG I +N   +      
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-----SGRILLNGKDVLGRLSP 328

Query: 103 RMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQY----------SRKAKESKVDS 151
           R  R+    Y+ +D     L+     L++A +L LG              R+A       
Sbjct: 329 RERRRLGLAYVPEDRHGHGLVL---DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE 385

Query: 152 IADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-K 209
           + +   +     +   + LSGG +++L +A EL   P ++   +PT GLD + A   + +
Sbjct: 386 LIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD-VGAIEFIHE 444

Query: 210 LLRDMAHQGTMIICT---LHQPSASLLNMADYLYVLTEG 245
            L ++   G  ++     L +    +L ++D + V+ EG
Sbjct: 445 RLLELRDAGKAVLLISEDLDE----ILELSDRIAVIYEG 479

Length = 501

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ 100
           K  L DI+      +++ ++G SG GK+  L      R   K     G +EI   + + Q
Sbjct: 15  KQALFDINMQIEQNKITALIGASGCGKSTFLRCFN--RMNDKIAKIDGLVEIEGKDVKNQ 72

Query: 101 DHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--VDSIADSLS 157
           D   LRK    + Q  N+  +  ++ E+++ A   KL      K +E    VD +     
Sbjct: 73  DVVALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGL 128

Query: 158 ISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
               K+ L ++   LSGGQ++RL IA  L   P ++ LDEPT+ LD +++  + +LL+++
Sbjct: 129 FEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL 188

Query: 215 AHQGTMIICTLHQPSASLLNMADY 238
           +H  +MI+ T +        +ADY
Sbjct: 189 SHNLSMIMVTHNMQQGK--RVADY 210

Length = 246

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 24/215 (11%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           L  +SG   + E+  ++GP+G+GK+ LL  +AG        + SG I+     L+     
Sbjct: 15  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG------MTSGSGSIQFAGQPLEAWSAT 68

Query: 105 -LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
            L +   Y+ Q       + V   LT+            K +   ++ +A +L++     
Sbjct: 69  ELARHRAYLSQQQTPPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDKLG 120

Query: 164 TLTKHLSGGQKKRLSIALELLS-----NPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
             T  LSGG+ +R+ +A  +L      NP+  ++ LDEP   LD    + L +LL  +  
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ 180

Query: 217 QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           QG  I+ + H  + + L  A   ++L  G     G
Sbjct: 181 QGLAIVMSSHDLNHT-LRHAHRAWLLKRGKLLASG 214

Length = 248

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 46  LKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           L ++S + V   ++  ++G SG+GK+ L+  +    RP          ++      +   
Sbjct: 21  LNNVS-LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79

Query: 105 LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
            R++   I Q  NLL    TV  +  VA  L+L N   +   + KV  +   + +    +
Sbjct: 80  ARRQIGMIFQHFNLLSSR-TVFGN--VALPLELDNT-PKDEIKRKVTELLALVGLGDKHD 135

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
           +   +LSGGQK+R++IA  L SNP ++  DE T+ LD     ++++LL+++  +  + I 
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195

Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            +      +  + D + V++ G    QGTV
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGTV 225

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 51/205 (24%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           +KD+S  F    ++ I+GPSG GK+ +L  +        +   +G I +++T + D  + 
Sbjct: 20  VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79

Query: 105 ---LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-ST 160
              +R+    + Q       +++ ++  V A  KL  + +R   +  V+S    +++   
Sbjct: 80  PVSIRRRVGMVFQKPNPFPAMSIYDN--VIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137

Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
            K+ L  +   LSGGQ++RL IA  +   P +I +DEP + LD ++   + +L+ ++  +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197

Query: 218 GTMIICTLH-QPSASLLNMADYLYV 241
            T+II T + Q +A + +   + Y+
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYM 222

Length = 252

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 65.9 bits (161), Expect = 4e-11
 Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 25/225 (11%)

Query: 38  YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           Y+  S ++L +++      E   I+GPSGSGK+ L  +L     P+      G + ++  
Sbjct: 465 YAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH-----GQVLVDGV 519

Query: 98  RLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
            L   D   LR++   ++Q+N+L        S ++  ++ L N  +          +A +
Sbjct: 520 DLAIADPAWLRRQMGVVLQENVLF-------SRSIRDNIALCNPGAPFEHVIHAAKLAGA 572

Query: 156 LS-ISTCK---NT-LTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
              IS      NT + +    LSGGQ++R++IA  L+ NP I+  DE T+ LDY +   +
Sbjct: 573 HDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632

Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           ++ +R++  +G  +I   H+ S   +   D + VL +G     G 
Sbjct: 633 MRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGR 674

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 35  THSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY 91
           TH Y   +   K  L +++      E   ++G +GSGK+ L+  L G  +P      SG 
Sbjct: 9   THIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----TSGK 63

Query: 92  IEINETRLQDHRM----LRKESCYIMQ---DNLLQELLTVEESLTVA-AHLKLG-NQYSR 142
           I I+   + D ++    +RK+   + Q     L +E  T+E+ +     +L L   +   
Sbjct: 64  IIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE--TIEKDIAFGPINLGLSEEEIEN 121

Query: 143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
           + K + ++ +   L     K+     LSGGQK+R++IA  +   P I+ LDEPT GLD  
Sbjct: 122 RVKRA-MNIVG--LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178

Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
               ++  ++++  +  M I  +      +  +AD + V+ +G C  QGT 
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229

Length = 287

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 29/238 (12%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F+++++         Y      +L+DIS    + E   ++GPSGSGK+ L++++     P
Sbjct: 3   FKNVTFR--------YPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI-----P 49

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
           +  + +SG I I+   ++D+ +  LR++   + QD  L    TV E++          + 
Sbjct: 50  RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAYGRPGATREEV 108

Query: 141 SRKAKESK----VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
              A+ +     +  + +       +  +   LSGGQ++R++IA  LL +P I+ LDE T
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVK--LSGGQRQRIAIARALLKDPPILILDEAT 166

Query: 197 TGLDYLNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           + LD   +  LV+  L R M ++ T +I   H+   S +  AD + VL +G    +GT
Sbjct: 167 SALD-TESERLVQAALERLMKNRTTFVIA--HR--LSTIENADRIVVLEDGKIVERGT 219

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 65.5 bits (160), Expect = 4e-11
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 34/233 (14%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T  Y  + +  L  IS V    E   ++G SGSGK+ L++++     P+  E +SG I +
Sbjct: 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI-----PRFYEPDSGQILL 391

Query: 95  NETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--NQYSRKAKESK-- 148
           +   L D+ +  LR++   + QD +L          T+A ++  G   Q  R   E    
Sbjct: 392 DGHDLADYTLASLRRQVALVSQDVVLFND-------TIANNIAYGRTEQADRAEIERALA 444

Query: 149 -------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
                  VD +   L     +N +   LSGGQ++RL+IA  LL +  I+ LDE T+ LD 
Sbjct: 445 AAYAQDFVDKLPLGLDTPIGENGV--LLSGGQRQRLAIARALLKDAPILILDEATSALDN 502

Query: 202 LNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             +  LV+  L R M  + T++I   H+   S +  AD + V+ +G    +GT
Sbjct: 503 -ESERLVQAALERLMQGRTTLVIA--HR--LSTIEKADRIVVMDDGRIVERGT 550

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 64.5 bits (158), Expect = 4e-11
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 38/206 (18%)

Query: 55  SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC---- 110
           ++ ++ I G SG+GKT L++ ++G  RP+K     G I +N   L D     K  C    
Sbjct: 23  AQGITAIFGRSGAGKTSLINAISGLTRPQK-----GRIVLNGRVLFDAE---KGICLPPE 74

Query: 111 -----YIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAK-ESKVDSIADSLSISTCKN 163
                Y+ QD  L     V            GN +Y       ++ D I   L I    +
Sbjct: 75  KRRIGYVFQDARLFPHYKVR-----------GNLRYGMAKSMVAQFDKIVALLGIEPLLD 123

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMII 222
                LSGG+K+R++I   LL+ P ++ +DEP   LD      L+  L  +A +    I+
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183

Query: 223 CTLHQPSASL---LNMADYLYVLTEG 245
              H    SL   L +AD + VL +G
Sbjct: 184 YVSH----SLDEILRLADRVVVLEQG 205

Length = 352

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 65.0 bits (159), Expect = 5e-11
 Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 52/227 (22%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--NETRLQ 100
           K ILK IS    + E   I+GPSGSGK+ L  +L G   P      SG + +   + R  
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT-----SGSVRLDGADLRQW 403

Query: 101 DHRMLRKESCYIMQDNLLQELL--TVEESLT-----------VAA------H---LKLGN 138
           D   L +   Y+ QD    EL   T+ E++            + A      H   L+L  
Sbjct: 404 DREQLGRHIGYLPQD---VELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ 460

Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
            Y           I +  +           LSGGQ++R+++A  L  +P ++ LDEP + 
Sbjct: 461 GYD--------TRIGEGGA----------TLSGGQRQRIALARALYGDPFLVVLDEPNSN 502

Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
           LD      L   +     +G  ++   H+PSA  L   D + VL +G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPSA--LASVDKILVLQDG 547

Length = 580

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 28/231 (12%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQ+++++   Y T   ++    +L+D+S      E++ ++GPSGSGK+ ++ +L  + +P
Sbjct: 14  FQNVTFA---YPTRPDTL----VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66

Query: 83  KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
           +      G + ++   +   +H+ L  +   + Q+ +L        SL       L +  
Sbjct: 67  QG-----GQVLLDGKPISQYEHKYLHSKVSLVGQEPVL-----FARSLQDNIAYGLQSCS 116

Query: 141 SRKAKESKVDSIADS------LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
               KE+   + A S          T        LSGGQK+R++IA  L+ NP ++ LDE
Sbjct: 117 FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE 176

Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
            T+ LD  +   + + L D   + T+++        S +  AD + VL  G
Sbjct: 177 ATSALDAESEQQVQQALYDWPERRTVLVIAHR---LSTVERADQILVLDGG 224

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 25/198 (12%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQ- 100
           ++LK +S    + ++  I+G SGSGK+  L  +    +P     ++G I +N  E RL+ 
Sbjct: 20  EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SAGSIRVNGEEIRLKR 74

Query: 101 ---------DHR---MLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
                    D R    LR     + Q  NL   +  +E  +    H+ LG   S+     
Sbjct: 75  DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-LG--VSKAEAIE 131

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           + +     + I+   +    HLSGGQ++R++IA  L   P ++  DEPT+ LD      +
Sbjct: 132 RAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEV 191

Query: 208 VKLLRDMAHQG-TMIICT 224
           +K+++D+A +G TM++ T
Sbjct: 192 LKVMQDLAEEGRTMVVVT 209

Length = 256

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 25/229 (10%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR--PKKTETNSGYIEINE 96
           S    ++L  ++       ++ ++GPSGSGK+ LL +        P+   +   Y++  +
Sbjct: 12  SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71

Query: 97  TRLQDHRMLRKESCYIMQ-DNLLQELLTVEESLTVAAHLKLGNQY-SRKAKESKV----- 149
               D   LR+    + Q  N +  L   E    VA  LKL     S+K  + +V     
Sbjct: 72  IFKMDVIELRRRVQMVFQIPNPIPNLSIFE---NVALGLKLNRLVKSKKELQERVRWALE 128

Query: 150 -----DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
                D + D L     K      LSGGQ++RL IA  L   P ++  DEPT  LD  N 
Sbjct: 129 KAQLWDEVKDRLDAPAGK------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182

Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
             +  L  ++    T+++ T     A+   ++DY+  L +G     G  
Sbjct: 183 AKIESLFLELKKDMTIVLVTHFPQQAA--RISDYVAFLYKGQIVEWGPT 229

Length = 250

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 12/203 (5%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           IL +IS    + E   I GPSG GK+ LL I+A    P          E  +        
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL---LFEGEDVSTLKPEA 74

Query: 105 LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
            R++  Y  Q   L  +  TVE++L     ++   +  R A    +D +A      +   
Sbjct: 75  YRQQVSYCAQTPALFGD--TVEDNLIFPWQIR-NRRPDRAAA---LDLLARFALPDSILT 128

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMII 222
                LSGG+K+R+++   L   P I+ LDE T+ LD  N  N+ + + R +  Q   ++
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Query: 223 CTLHQPSASLLNMADYLYVLTEG 245
              H    + +  AD +  L  G
Sbjct: 189 WITHDKDQA-IRHADKVITLQPG 210

Length = 223

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 65.0 bits (159), Expect = 7e-11
 Identities = 68/241 (28%), Positives = 101/241 (41%), Gaps = 74/241 (30%)

Query: 45  ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-------- 91
           IL D+S     G FV+     I+GPSGSGK+ LL +L G+  P   E+ S +        
Sbjct: 468 ILDDVSLQIEPGEFVA-----IVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLAG 519

Query: 92  IEINETR------LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK 145
           +++   R      LQ+ R++   S  I ++      LT++E+   A    L         
Sbjct: 520 LDVQAVRRQLGVVLQNGRLM---SGSIFENIAGGAPLTLDEAWEAARMAGL--------- 567

Query: 146 ESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD--- 200
              + ++   +   IS    TL    SGGQ++RL IA  L+  P I+  DE T+ LD   
Sbjct: 568 AEDIRAMPMGMHTVISEGGGTL----SGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623

Query: 201 ---------YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
                     L  T +V     +AH+ + I              AD +YVL  G    QG
Sbjct: 624 QAIVSESLERLKVTRIV-----IAHRLSTIR------------NADRIYVLDAGRVVQQG 666

Query: 252 T 252
           T
Sbjct: 667 T 667

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 63.8 bits (156), Expect = 7e-11
 Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 48/245 (19%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD 101
            K+++ ++     + E   +LGPSG GKT +L ++AG+  P     +SG I ++    QD
Sbjct: 26  GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----DSGRIMLDG---QD 77

Query: 102 HRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLS 157
              +  E+ ++    Q   L   +TV E+  VA  L++     +K   +++   + ++L 
Sbjct: 78  ITHVPAENRHVNTVFQSYALFPHMTVFEN--VAFGLRM-----QKTPAAEITPRVMEALR 130

Query: 158 ISTCKNTLT---KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
           +   +         LSGGQ++R++IA  +++ P ++ LDE  + LDY       KL + M
Sbjct: 131 MVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY-------KLRKQM 183

Query: 215 AHQ--------G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGY 265
            ++        G T +  T  Q  A  L M+D + V+ +G     GT P  +       Y
Sbjct: 184 QNELKALQRKLGITFVFVTHDQEEA--LTMSDRIVVMRDGRIEQDGT-PREI-------Y 233

Query: 266 QCPSN 270
           + P N
Sbjct: 234 EEPKN 238

Length = 375

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 19/228 (8%)

Query: 36  HSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           H Y  K+   +  L D++    S     I+G +GSGK+ LL  L G  +P       G  
Sbjct: 10  HRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGER 69

Query: 93  EI-NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ---YSRKAKESK 148
            I    + +  + LRK+   + Q     E    EE  TV   +  G      S +  + K
Sbjct: 70  VITAGKKNKKLKPLRKKVGIVFQ---FPEHQLFEE--TVEKDICFGPMNFGVSEEDAKQK 124

Query: 149 VDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
              + + + +   +  L +    LSGGQ +R++IA  L   P ++ LDEPT GLD     
Sbjct: 125 AREMIELVGLP--EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182

Query: 206 NLVKLLRDMAHQGTM-IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            ++++   +  +  +  +   H         AD + V+ +G    QGT
Sbjct: 183 EMMEMFYKLHKEKGLTTVLVTHS-MEDAARYADQIVVMHKGTVFLQGT 229

Length = 290

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 64.5 bits (158), Expect = 9e-11
 Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 46/252 (18%)

Query: 17  KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDIL 76
              +L   ++S++        Y  + + +LK +S    + E   +LG +G GK+ LL +L
Sbjct: 335 DQVSLTLNNVSFT--------YPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386

Query: 77  AGYRRPKKTETNSGYIEINETRLQDHR--MLRKESCYIMQ----------DNLL--QELL 122
                P       G I +N   + D+    LR+    + Q          DNLL      
Sbjct: 387 TRAWDP-----QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441

Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
           + E  + V   + L               + D   ++       + LSGG+++RL IA  
Sbjct: 442 SDEALIEVLQQVGLEKL------------LEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489

Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA--DYLY 240
           LL +  ++ LDEPT GLD      +++LL + A   T+++ T H+    L  +   D + 
Sbjct: 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT-HR----LTGLEQFDRIC 544

Query: 241 VLTEGYCTYQGT 252
           V+  G    QGT
Sbjct: 545 VMDNGQIIEQGT 556

Length = 574

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 15/216 (6%)

Query: 30  ALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS 89
           A+  +  S+   ++ IL+ +S      +++ I+GPSG GK+  L  L      +      
Sbjct: 7   AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVE 66

Query: 90  GYIE-----INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
           G +E     I E R+  +R+ R+ S    + NL    ++V ++  VA  +K+     +  
Sbjct: 67  GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP--MSVYDN--VAYGVKIVGWRPKLE 122

Query: 145 KESKVDS-IADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
            +  V+S + D+      K+ + K    LSGGQ++RL IA  L   P ++ +DEP  GLD
Sbjct: 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182

Query: 201 YLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLN 234
            + +  +  L++ +  +   TM+I + +    S L+
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218

Length = 261

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 26/194 (13%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNS----GYIEI 94
           LK I+    +++++ ++GPSG GK+ LL       D++ G +   K   +     G I++
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
            + R++   + +K + + M         ++ E+  VA  L+      +K  +  V+    
Sbjct: 79  ADLRIKVGMVFQKPNPFPM---------SIYEN--VAYGLRAQGIKDKKVLDEVVERSLR 127

Query: 155 SLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
             ++    K+ L  H   LSGGQ++RL IA  +   P +I +DEPT+ LD +    + +L
Sbjct: 128 GAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187

Query: 211 LRDMAHQGTMIICT 224
           + ++    T++I T
Sbjct: 188 MEELKKNYTIVIVT 201

Length = 249

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 64.2 bits (157), Expect = 1e-10
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 26/195 (13%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH-RMLRKESCYIM 113
           ILGP+G GK+  L ILAG  +P   + E    + E+ +    T LQ++ + L +     +
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAV 164

Query: 114 QDNLLQELL------TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
                 +L+       V E L             +  +  K D + + L +    +    
Sbjct: 165 HKPQYVDLIPKVVKGKVGELLK------------KVDERGKFDEVVERLGLENVLDRDVS 212

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
            LSGG+ +R++IA  LL +  + F DEP++ LD     N  +++R++A  G  +I   H 
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272

Query: 228 PSASLLNMADYLYVL 242
             A L  ++D++++L
Sbjct: 273 -LAVLDYLSDFVHIL 286

Length = 591

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 41/249 (16%)

Query: 27  SYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGY 79
           ++SA Y +        K  +K+++      +++ I+GPSG GKT LL       D + G+
Sbjct: 8   NFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGF 59

Query: 80  RRPKKTETNSGYIE---INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL 136
           R   K      Y +   I + +L D    RK+   + Q             +++  ++  
Sbjct: 60  RVEGKI-----YFKGQDIYDPQL-DVTEYRKKVGMVFQK-------PTPFPMSIYDNVAF 106

Query: 137 GNQYSRKAKESKVDSIAD-SLSIST----CKNTLTK---HLSGGQKKRLSIALELLSNPS 188
           G +      + K+D I + SL  +      K+ L K    LSGGQ++RL IA  L   P 
Sbjct: 107 GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166

Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT 248
           +I LDEPT+ LD +    + KLL +++   T++I T +   A  + +ADY+  +  G   
Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQA--IRIADYIAFMYRGELI 224

Query: 249 YQGTVPGLV 257
             G    +V
Sbjct: 225 EYGPTREIV 233

Length = 250

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
             D+S      E+  +LG +G+GK+ L+ IL G  +P     +SG I ++  E R++  R
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----DSGEIRVDGKEVRIKSPR 74

Query: 104 MLRKESCYIM-QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
              +    ++ Q  +L   LTV E++ +      G    R+   +++  +++   +    
Sbjct: 75  DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP 134

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           +     LS G+++R+ I   L     ++ LDEPT  L    A  L ++LR +A +G  II
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194

Length = 501

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 33  YDTHSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           Y T           +L ++S      E   +LG SG GK+ L  +L G  +P +   +  
Sbjct: 12  YRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFR 71

Query: 91  YIEINETRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVA-AHLKLGNQYSRKAKES 147
             ++ +   +  R  R++   + QD+   +   +TV + +     HL   ++  +KA+ +
Sbjct: 72  GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA 131

Query: 148 KV-------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           ++          AD L          + LSGGQ +R++IA  L   P +I LDE  + LD
Sbjct: 132 ELLDMVGLRSEDADKLP---------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182

Query: 201 YLNATNLVKLLRDMAHQG 218
            +    +++LLR +    
Sbjct: 183 MVLQAVILELLRKLQQAF 200

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDH 102
           ILK +S      +   ++G SG GK+ ++ +L  +  P      SG I ++  + R  + 
Sbjct: 18  ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----TSGEILLDGVDIRDLNL 72

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSL 156
           R LR +   + Q+ +L          T+A +++ G   +        AK++ +     SL
Sbjct: 73  RWLRSQIGLVSQEPVLF-------DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125

Query: 157 SISTCKNTL----TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
                 +TL       LSGGQK+R++IA  LL NP I+ LDE T+ LD   +  LV+   
Sbjct: 126 PDGY--DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA-ESEKLVQEAL 182

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           D A +G   I   H+ S   +  AD + VL  G    QGT
Sbjct: 183 DRAMKGRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGT 220

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 27/228 (11%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKT----KLLDILAGYRRPKKTETNSGYIEINETR 98
            + +K IS    + E   ++G SGSGK+     +L +L            SG I  +   
Sbjct: 23  VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS----PAAAHPSGSILFDGED 78

Query: 99  L-----QDHRMLRKESC-YIMQDNL--LQELLTVEESL--TVAAHLKLGNQYSRKAKESK 148
           L     +  R +R      I Q+ +  L  L T+ + L   +  H  L    SR A  ++
Sbjct: 79  LLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL----SRAAARAR 134

Query: 149 VDSIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
              + + + I   +  L  +   LSGGQ++R+ IA+ L + P ++  DEPTT LD     
Sbjct: 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194

Query: 206 NLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            ++ LL+++ A  G  I+   H     +   AD +YV+  G     GT
Sbjct: 195 QILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEIVETGT 241

Length = 534

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLD-ILAG 78
           F+ +S++  Y D+       K  L DIS        + ++G +GSGK+   KL++ +L  
Sbjct: 8   FKHVSFT--YPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59

Query: 79  YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL--TVEESLTVAAHLKL 136
              P    T  G I +    + D R    E   I+  N   + +  TV +   VA  L+ 
Sbjct: 60  DDNPNSKITVDG-ITLTAKTVWDIR----EKVGIVFQNPDNQFVGATVGDD--VAFGLE- 111

Query: 137 GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
                R      V  +   + +    ++   +LSGGQK+R++IA  L   P II LDE T
Sbjct: 112 NRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST 171

Query: 197 TGLDYLNATNLVKLLRD-MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           + LD      ++KL+R         +I   H    +  NMAD + VL +G    QG+
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGS 226

Length = 282

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 31/205 (15%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINET 97
           +LK+I+  F  ++++ I+GPSG GK+ LL       DI++G R         G + ++  
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL-------EGAVLLDNE 71

Query: 98  RLQDHRM----LRKESCYIMQD------NLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
            +    +    LRK    + Q       ++   +      L   A  +L     +  +++
Sbjct: 72  NIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQA 131

Query: 148 KV-DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
            + D + D+L  S         LSGGQ++RL IA  L   P +I +DEP + LD ++   
Sbjct: 132 ALWDEVKDNLHKSGLA------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMR 185

Query: 207 LVKLLRDMAHQGTMIICTLHQPSAS 231
           + +L++++    T+ I T +   A+
Sbjct: 186 IEELMQELKQNYTIAIVTHNMQQAA 210

Length = 251

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E++ + G SG+GK+ LL ++ G  RP   +      +I   + ++   LR++   I QD+
Sbjct: 29  EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH 88

Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            L    TV ++  VA  L +        +  +V +  D + +          LSGG+++R
Sbjct: 89  HLLMDRTVYDN--VAIPLIIAGASGDDIRR-RVSAALDKVGLLDKAKNFPIQLSGGEQQR 145

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           + IA  +++ P+++  DEPT  LD   +  +++L  +    G  ++   H
Sbjct: 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 30/215 (13%)

Query: 39  SIKSKDI------LKDISGVFVS---KELSVILGPSGSGKT---KLLDILAGYRRPKKTE 86
           +IK KD+       K I G+ +     +++ I+GPSG GK+   K L+ ++    P K E
Sbjct: 7   AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66

Query: 87  TNSGYI--EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
               +    I + R+  +R+ R+      + N           +++  ++  G + S K 
Sbjct: 67  GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF--------PMSIYENVAYGVRISAKL 118

Query: 145 KESKVDSIADSLSISTC-----KNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPT 196
            ++ +D I +S           K+ L K    LSGGQ++RL IA  L   P ++ +DEP 
Sbjct: 119 PQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178

Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
           + LD +    + +L+  +  + T+ I T +   A+
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQAT 213

Length = 259

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 22/234 (9%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S+S   Y           +LK ++      E+  ++GPSGSGK+ +  +L    +P
Sbjct: 481 FQDVSFS---YPNRP----DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP 533

Query: 83  KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
                  G + ++   L   DH  L ++   + Q+ +L    +V E++          + 
Sbjct: 534 -----TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEI 587

Query: 141 SRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
              AK +              T        LSGGQK+R++IA  L+  P ++ LDE T+ 
Sbjct: 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647

Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           LD   A     L    +     ++   H+   S +  AD + VL +G     GT
Sbjct: 648 LD---AECEQLLQESRSRASRTVLLIAHR--LSTVERADQILVLKKGSVVEMGT 696

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI------NETRLQDHRMLRKESC 110
           E+ VI+G SGSGK+  + +L      +  E  +G I I       ++ ++   + RK+  
Sbjct: 20  EIFVIMGLSGSGKSTTVRMLN-----RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG 74

Query: 111 YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-- 168
            + Q   L   +T+ ++ ++   L    +  RK K        + L +   +    ++  
Sbjct: 75  MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA------LELLKLVGLEEYEHRYPD 128

Query: 169 -LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM--AHQGTMIICTL 225
            LSGG ++R+ +A  L + P I+ +DE  + LD L   ++   L+ +    Q T++  T 
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188

Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
               A  + + D + ++  G     GT
Sbjct: 189 DLDEA--IRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 25/217 (11%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L  ++      E   ++GPSG+GK+ L  +L  +  P+        +++ +    +   L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE---L 412

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGN------QYSRKAKESKVDSIADSLS-- 157
           R     + QD +L        + +V  +++ G       +    A+ +       +L   
Sbjct: 413 RARMALVPQDPVLF-------AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
             T        LSGGQ++R++IA  +L +  I+ LDE T+ LD  +   LV+  L   M 
Sbjct: 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ-LVQQALETLMK 524

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            + T+II   H+  A++L  AD + V+ +G    QGT
Sbjct: 525 GRTTLIIA--HR-LATVLK-ADRIVVMDQGRIVAQGT 557

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 63/230 (27%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEI 94
            K  L DI+       ++ ++GPSG GK+ LL       D++ G R        +G I  
Sbjct: 18  EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI-------TGDILY 70

Query: 95  NETRLQDHRM----LRKESCYIMQ----------DNLL-----------QELLT-VEESL 128
           N   + D       LR++   + Q          +N+            + L T VE+SL
Sbjct: 71  NGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSL 130

Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS 188
             AA                 D + D L  S         LSGGQ++RL IA  L  NP 
Sbjct: 131 KGAALW---------------DEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPE 169

Query: 189 IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
           +I +DEP + LD +    +  L+ D+  + T+II T +   A+   ++DY
Sbjct: 170 VILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA--RVSDY 217

Length = 253

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 54/215 (25%), Positives = 107/215 (49%), Gaps = 30/215 (13%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYR-------RPKKTETNSGY 91
           LK+I+ +   K+++ ++GPSG GK+  L       D+  G          P      S  
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91

Query: 92  IEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV-D 150
           ++  E R++   + +K + +           ++ E+  VA  L++     R   E +V +
Sbjct: 92  VDPIEVRMRISMVFQKPNPFPK---------SIFEN--VAYGLRIRGVKRRSILEERVEN 140

Query: 151 SIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           ++ ++      K+ L     +LSGGQ++RL IA  L ++P I+  DEPT+ LD +   ++
Sbjct: 141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200

Query: 208 VKLLRDMAHQGTMIICTLH-QPSASLLNMADYLYV 241
            +L+ D+ ++ T++I T + Q +A + +   Y+Y+
Sbjct: 201 EELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235

Length = 265

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           IL  +  V    E   ++G SGSGK+ LL ILAG       + +SG + +    L  H+M
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-----DDGSSGEVSLVGQPL--HQM 77

Query: 105 -------LRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
                  LR +   ++ Q  +L   L   E++ + A L+   + SR+++      +   L
Sbjct: 78  DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLE-QL 134

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            +    + L   LSGG+++R+++A      P ++F DEPT  LD      +  LL  +  
Sbjct: 135 GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194

Query: 217 -QGTMIICTLHQP 228
             GT +I   H  
Sbjct: 195 EHGTTLILVTHDL 207

Length = 228

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           LK+I+      E++ I+GPSG GK+  +  L    +       +G +  N + +   ++ 
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 105 ---LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST 160
              LRK    + Q  N   +  ++ +++     +  G +  +K +E    S+ D      
Sbjct: 88  LVELRKNIGMVFQKGNPFPQ--SIFDNVAYGPRIH-GTKNKKKLQEIVEKSLKDVALWDE 144

Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
            K+ L      LSGGQ++RL IA  L +NP ++ +DEPT+ LD ++   + +L+  +  +
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204

Query: 218 GTMIICTLHQPSAS 231
            T++I T +   A+
Sbjct: 205 YTIVIVTHNMQQAA 218

Length = 259

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 57.5 bits (140), Expect = 6e-10
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
            LSGG+K RL++A  LL NP+++ LDEPT  LD  +   L + L++  + GT+I+
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVIL 122

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 18/191 (9%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH--RMLRKESCYI 112
           ++GP+G GK+  L ILAG  +P   K +    + EI +    + LQ++  ++L  +   I
Sbjct: 31  LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90

Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG 172
           ++   +  +         A   K+G    +K +  K+D + D L +    +     LSGG
Sbjct: 91  VKPQYVDLI-------PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGG 143

Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
           + +R++IA  L  +    F DEP++ LD     N  +L+R++A     ++   H    ++
Sbjct: 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH--DLAV 201

Query: 233 LNM-ADYLYVL 242
           L+  +DY++ L
Sbjct: 202 LDYLSDYIHCL 212

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 61.0 bits (149), Expect = 8e-10
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 23/188 (12%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L  +S      E+  +LG +G+GK+ L+ IL+G   P     +SG I I+   +      
Sbjct: 24  LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----DSGEILIDGKPVA--FSS 76

Query: 106 RKESCYIMQDN----LLQELLTVEESLTVAAHLKLGNQ-------YSRKAKESKVDSIAD 154
            +++           + QEL  V   L+VA ++ LG +         RKA   +   +  
Sbjct: 77  PRDA----LAAGIATVHQELSLVPN-LSVAENIFLGREPTRRFGLIDRKAMRRRARELLA 131

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            L +    +TL   LS  Q++ + IA  L  +  ++ LDEPT  L       L  L+R +
Sbjct: 132 RLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191

Query: 215 AHQGTMII 222
             QG  II
Sbjct: 192 KAQGVAII 199

Length = 500

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.3 bits (143), Expect = 9e-10
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEIN 95
           K  +K+++       ++ ++GPSG GKT  L       D+  G R   +   +    +I 
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ--DIY 74

Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK-----AKESKV- 149
             R+    M R+      + N    +   +    V A LKL     R      A+ S   
Sbjct: 75  GPRVDPVAMRRRVGMVFQKPNPFPTMSVFD---NVVAGLKLAGIRDRDHLMEVAERSLRG 131

Query: 150 ----DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
               D + D L       T    LSGGQ++RL IA  L   P I+ +DEPT+ LD  +  
Sbjct: 132 AALWDEVKDRL------KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185

Query: 206 NLVKLLRDMAHQGTMIICT--LHQPS 229
            +  L+ D+    T+II T  +HQ +
Sbjct: 186 RIEDLMTDLKKVTTIIIVTHNMHQAA 211

Length = 252

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 22/189 (11%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L+D S       ++ ++G +GSGK+ L   L G+ R       SG I I     +  + L
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTR--QAL 75

Query: 106 RKE-SCYIMQDNLLQEL-----LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-- 157
           +K    Y+ Q    +E+     + VE+ + +  +  +G  + R+AK+     +  +L+  
Sbjct: 76  QKNLVAYVPQS---EEVDWSFPVLVEDVVMMGRYGHMG--WLRRAKKRDRQIVTAALARV 130

Query: 158 -ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            +   ++     LSGGQKKR+ +A  +     +I LDEP TG+D      ++ LLR++  
Sbjct: 131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190

Query: 217 QG-TMIICT 224
           +G TM++ T
Sbjct: 191 EGKTMLVST 199

Length = 272

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--R 103
           LKD+S      + + I+G +GSGK+ +  ++ G  +       SG I  N   + D    
Sbjct: 25  LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----KSGEIFYNNQAITDDNFE 79

Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
            LRK    + Q N   + +       VA  L+  +         +V      + +    +
Sbjct: 80  KLRKHIGIVFQ-NPDNQFVGSIVKYDVAFGLE-NHAVPYDEMHRRVSEALKQVDMLERAD 137

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMII 222
                LSGGQK+R++IA  L  NPS+I LDE T+ LD     NL+ L+R + +     II
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITII 197

Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
              H  S ++   AD++ V+ +G    +GT
Sbjct: 198 SITHDLSEAM--EADHVIVMNKGTVYKEGT 225

Length = 269

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 31/234 (13%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           +Y       L++++      ++  I GP+GSGK+ LL ++      +  + + G I  ++
Sbjct: 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-----RHFDVSEGDIRFHD 376

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEE-----SLTVAAHLKLGNQYSRKAKESKVDS 151
             L   ++          D+    L  V +     S TVA ++ LG   + + +   V  
Sbjct: 377 IPLTKLQL----------DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVAR 426

Query: 152 IA----DSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           +A    D L +    +T        LSGGQK+R+SIA  LL N  I+ LD+  + +D   
Sbjct: 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486

Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
              ++  LR      T+II + H+ SA  L  A  + V+  G+   +G    L 
Sbjct: 487 EHQILHNLRQWGEGRTVII-SAHRLSA--LTEASEILVMQHGHIAQRGNHDQLA 537

Length = 569

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 18/226 (7%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKT-------KLLDILAGYRRPKKT---ETNSGYIE 93
             ++++S      E   I+G SGSGK+       +LL+   G  +  K      +   IE
Sbjct: 30  AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89

Query: 94  INETRLQDHRMLR-KESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
           ++E      R +R  +   I Q+ +  L  + TV E   +A  ++L    SR+    +  
Sbjct: 90  LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQ--IAESIRLHQGASREEAMVEAK 147

Query: 151 SIADSLSISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
            + D + I   +  L+++   LSGG ++R+ IA+ L   P+++  DEPTT LD      +
Sbjct: 148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207

Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           ++L++ +  + +M +  +      +  +AD + V+ +G     G+V
Sbjct: 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253

Length = 623

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 34/220 (15%)

Query: 49  ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLR 106
           +S    + E+  ++GP+G+GK+ LL  +AG          SG I+     L+      L 
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAG------LLPGSGSIQFAGQPLEAWSAAELA 68

Query: 107 KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT 166
           +   Y+ Q       + V + LT    L   ++   +A  S ++ +A++L +        
Sbjct: 69  RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSV 124

Query: 167 KHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQG- 218
             LSGG+ +R+ +A  +L      NP+  ++ LDEP   LD      L +LL ++  QG 
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI 184

Query: 219 TMIIC------TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            +++       TL          AD +++L +G     G 
Sbjct: 185 AVVMSSHDLNHTLRH--------ADRVWLLKQGKLLASGR 216

Length = 248

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 59.2 bits (144), Expect = 4e-09
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 40/210 (19%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET------NSGYIE--- 93
           K+ILKDIS  F       +LG +G+GK+ LL I+AG  +    E         GY+    
Sbjct: 18  KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77

Query: 94  -INETR---------LQDHRMLRKESCYIMQ---------DNLLQELLTVEESLTVAAHL 134
            ++ T+         + + +        I           D LL E   ++E +  A   
Sbjct: 78  QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137

Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
            L         + K++   D+L      +     LSGG+++R+++   LLS P ++ LDE
Sbjct: 138 DL---------DRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187

Query: 195 PTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           PT  LD  +   L + L++  + GT++  T
Sbjct: 188 PTNHLDAESVAWLEQHLQE--YPGTVVAVT 215

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 51/207 (24%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           LK I+      +++ ++GPSG GK+  L  L        +    G + ++   +    + 
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 105 ---LRKESCYIMQ----------DNL--------------LQELLTVEESLTVAAHLKLG 137
              LRK    + Q          DN+              L E+  VE+SL  AA     
Sbjct: 79  VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI--VEKSLKGAALW--- 133

Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
                       D + D L     K+ L   LSGGQ++RL IA  L   P ++ +DEPT+
Sbjct: 134 ------------DEVKDRLK----KSALG--LSGGQQQRLCIARALAVEPEVLLMDEPTS 175

Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICT 224
            LD ++   + +L++++    T++I T
Sbjct: 176 ALDPISTLKIEELIQELKKDYTIVIVT 202

Length = 250

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 32/215 (14%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
           LK IS     K +   +GPSG GK+  L       D++   R   +   +   I     +
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78

Query: 99  LQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLG----NQYSRKAKESKV---- 149
           + +   LRK    + Q  N   +  ++ E+  VA  L++     N + R+  E  +    
Sbjct: 79  VDE---LRKNVGMVFQRPNPFPK--SIFEN--VAYGLRVNGVKDNAFIRQRVEETLKGAA 131

Query: 150 --DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
             D + D L  S         LSGGQ++RL IA  +  +PS++ +DEP + LD ++   +
Sbjct: 132 LWDEVKDKLKESAFA------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185

Query: 208 VKLLRDMAHQGTMIICTLH-QPSASLLNMADYLYV 241
            +L+ ++    T++I T + Q +A + +   + Y+
Sbjct: 186 EELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220

Length = 250

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 59.3 bits (143), Expect = 5e-09
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)

Query: 61   ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETRLQDHRMLRKESCYIMQDNLLQ 119
            +LG +G+GKT    +L G      T   SG   +  ++ L +   + +   Y  Q + + 
Sbjct: 1970 LLGVNGAGKTTTFKMLTG-----DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024

Query: 120  ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD----SLSISTCKNTLTKHLSGGQKK 175
            +LLT  E L + A L       R     +++ +A+    SL +S   + L    SGG K+
Sbjct: 2025 DLLTGREHLYLYARL-------RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077

Query: 176  RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
            +LS A+ L+  P ++ LDEPTTG+D      L   +  +  +G  ++ T H
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 22/169 (13%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ- 100
           S   + D+S    + +   I+GP+G+GKT L+++L     P       G I I+   +  
Sbjct: 347 SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDINT 401

Query: 101 -DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK--ESKVDSIADSLS 157
                LRK    + QD  L          ++  +++LG + +   +  E+   + A    
Sbjct: 402 VTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVYEAAKAAAAHDFI 454

Query: 158 ISTCKNTLT------KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +       T        LSGG+++RL+IA  +L N  I+ LDE T+ LD
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 56.3 bits (137), Expect = 6e-09
 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI---- 92
            Y      +LK+IS      E   I+G +GSGK+ LL  LA +R     E +SG I    
Sbjct: 11  RYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL--LALFRL---VELSSGSILIDG 65

Query: 93  -EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA-----KE 146
            +I++  L D   LR     I QD +L        S T+ ++L    +YS +      + 
Sbjct: 66  VDISKIGLHD---LRSRISIIPQDPVL-------FSGTIRSNLDPFGEYSDEELWQALER 115

Query: 147 SKVDSIADSLS------ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
             +    +SL       +         +LS GQ++ L +A  LL    I+ LDE T  +D
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGE----NLSVGQRQLLCLARALLRKSKILVLDEATASVD 171

Query: 201 YLNATNLVKLLRDMAHQGTMI 221
                 + K +R+     T++
Sbjct: 172 PETDALIQKTIREAFKDCTVL 192

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 24/243 (9%)

Query: 20  NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
           +++  ++SY+  Y     +  K+   L + S  F   +++ ++G +GSGK+ ++ +  G 
Sbjct: 6   DIILDNVSYT--YAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60

Query: 80  RRPKKTETNSG--YIEINETRLQDHRMLRKESCYIMQ---DNLLQELLTVEESLTVAAHL 134
              +  +T  G   I  N  ++++ + LRKE   + Q     L QE  T+E+ +     +
Sbjct: 61  IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE--TIEKDIAFGP-V 117

Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTK----HLSGGQKKRLSIALELLSNPSII 190
            LG       K+     + + L +        K     LSGGQK+R+++A  +  + + +
Sbjct: 118 NLGEN-----KQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172

Query: 191 FLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
            LDEPT GLD     + + L  R        II   H     +L +AD + V+ EG    
Sbjct: 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVIS 231

Query: 250 QGT 252
            G+
Sbjct: 232 IGS 234

Length = 289

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 68/298 (22%), Positives = 126/298 (42%), Gaps = 46/298 (15%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSI----KSKDILKDISGVFVSKE 57
           K ++AEL+      +   +LL +D +  A  ++  +++     ++K +L D++      +
Sbjct: 51  KQKKAELKQFLNKKKTQVDLLKEDFN-HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNK 109

Query: 58  LSVILGPSGSGKTKLL-------DILAGYRRPKK-----TETNSGYIEINETRLQDHRML 105
           ++  +GPSG GK+  L       D++ G     +     T T S  I   E R +   + 
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169

Query: 106 RKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCK 162
           +K + + M   DN             VA   +      RK  E  V+    S ++    K
Sbjct: 170 QKPTPFEMSIFDN-------------VAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216

Query: 163 NTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT 219
           + L K    LSGGQ++RL IA  +   P ++ +DEPT+ LD +    + +L+ ++  + +
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS 276

Query: 220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
           +II T     A    ++D      +G+    G    +  +        P N    DY+
Sbjct: 277 IIIVTHSMAQAQ--RISDETVFFYQGWIEEAGETKTIFIH--------PKNKRTKDYI 324

Length = 329

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 30/237 (12%)

Query: 24  QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK 83
           + IS+   Y D  +Y+      LKD+S      E   I+G +GSGK+ L  +L G   P+
Sbjct: 9   EHISFR--YPDAATYA------LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60

Query: 84  KTETNSGYIEINETRLQDHRM--LRKESCYIMQ--DNLLQEL-LTVEESLTVAAHLKLGN 138
                +G I +    L +  +  +R++   + Q  DN  Q +  TV++   VA  L+   
Sbjct: 61  -----AGTITVGGMVLSEETVWDVRRQVGMVFQNPDN--QFVGATVQDD--VAFGLE-NI 110

Query: 139 QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
              R+    +VD     + +    N     LSGGQK+R++IA  L   P II LDE T+ 
Sbjct: 111 GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170

Query: 199 LDYLNATNLVKLLRDMAHQGTM-IICTLH--QPSASLLNMADYLYVLTEGYCTYQGT 252
           LD      +++ +R +  Q  + ++   H    +A     AD + V+ +G    +GT
Sbjct: 171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ----ADRVIVMNKGEILEEGT 223

Length = 279

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 23/179 (12%)

Query: 48  DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRK 107
           D+S      E+  +LG SG GK+ LL +LAG+ +P      +G I ++   L      ++
Sbjct: 37  DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----TAGQIMLDGVDLSHVPPYQR 91

Query: 108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
               + Q   L   +TVE+++        G +  +  K      + + L +   +    +
Sbjct: 92  PINMMFQSYALFPHMTVEQNIA------FGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR 145

Query: 168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMII 222
               LSGGQ++R+++A  L   P ++ LDEP   LD        K LRD M  +   I+
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLRDRMQLEVVDIL 196

Length = 377

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 32/196 (16%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHR 103
           L DIS    + ++  ++G +G+GK+ LL IL+G  +P     ++G I I+  E R     
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----DAGSILIDGQEMRFASTT 74

Query: 104 MLRKESCYIMQDNLL-------QELLTVEESLTVAAHLKLGNQYSR------KAKESKVD 150
                        L        QEL  V E +TVA +L LG    +      +    +  
Sbjct: 75  -----------AALAAGVAIIYQELHLVPE-MTVAENLYLGQLPHKGGIVNRRLLNYEAR 122

Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
              + L +    +T  K+LS GQ++ + IA  L  N  +I  DEPT+ L       L ++
Sbjct: 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182

Query: 211 LRDMAHQGTMIICTLH 226
           +R++  +G +I+   H
Sbjct: 183 IRELRAEGRVILYVSH 198

Length = 501

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 49  ISGVFVSKELSVIL---GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           + GV +S     ++   GP+G+GKT LL  + G   P          ++        R  
Sbjct: 19  LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---SARAA 75

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR--KAKESKVDSIADSLSISTCKN 163
            +    + QD  L     V + + +        ++    +   + V+   +   ++   +
Sbjct: 76  SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-RFDTWTETDRAAVERAMERTGVAQFAD 134

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
                LSGG+++R+ +A  L     ++ LDEPT  LD  +    ++L+R +   G   + 
Sbjct: 135 RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVA 194

Query: 224 TLHQPSASLLNMA----DYLYVLTEG 245
            +H      L++A    D L +L +G
Sbjct: 195 AIHD-----LDLAARYCDELVLLADG 215

Length = 402

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 21/198 (10%)

Query: 33  YDTHSYSIKS--KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           Y     S K   + +L ++S    S E   +LG SG GK+ L  +L G   P +   +  
Sbjct: 13  YAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWR 72

Query: 91  YIEINETRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAA-HLKLGNQYSRKAKES 147
              + +      +  R++   + QD++  +    TV E +     HL   ++  R A+ S
Sbjct: 73  GEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS 132

Query: 148 KV-------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           ++       DS+ D              LSGGQ +R+ +A  L   P ++ LDE  + LD
Sbjct: 133 EMLRAVDLDDSVLDKRP---------PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183

Query: 201 YLNATNLVKLLRDMAHQG 218
            +    +++LL+ +  Q 
Sbjct: 184 LVLQAGVIRLLKKLQQQF 201

Length = 268

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 39/192 (20%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSK--ELSVILGPSGSGKTKLLDILAGYR 80
           F D+S+S   YD       S+  ++D+S  F +K  +   I+GP+G+GK+ L+++L    
Sbjct: 337 FDDVSFS---YDN------SRQGVEDVS--FEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385

Query: 81  RPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTV----AAHL 134
            P+     SG I I+ T ++      LR+    + QD  L    ++E+++ V    A   
Sbjct: 386 DPQ-----SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPDATDE 439

Query: 135 KLGNQYSRKAKE--SKVDSIADSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNPS 188
           ++     R A E     D I          +T+     + LSGG+++RL+IA  LL +P 
Sbjct: 440 EM-----RAAAERAQAHDFIERKPD---GYDTVVGERGRQLSGGERQRLAIARALLKDPP 491

Query: 189 IIFLDEPTTGLD 200
           I+ LDE T+ LD
Sbjct: 492 ILILDEATSALD 503

Length = 588

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.5 bits (136), Expect = 9e-09
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 34/216 (15%)

Query: 32  YYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKK 84
           Y+D          ILK+++       ++ ++GPSG GK+  +       D++ G+R    
Sbjct: 12  YFDDA-------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH--- 61

Query: 85  TETNSGYIEINETRLQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQ 139
                G+I ++   + D  +    LRK+   + Q  N   +  ++ ++  VA  L++  +
Sbjct: 62  ----EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK--SIFDN--VAYGLRIHGE 113

Query: 140 YSRKAKESKVDSIADSLSI-STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEP 195
                 E +V+    + ++    K+ L K    LSGGQ++RL IA  +  +P +I +DEP
Sbjct: 114 DDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173

Query: 196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
            + LD ++ T +  L+  +    T++I T +   A+
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT 209

Length = 250

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 16/214 (7%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET---NSGYIEINETRLQDH 102
           +KD S      E+ VI+G SGSGK+ ++ +L     P + +         +I++  L++ 
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           R  RK+   + Q   L   +TV ++   A  ++L    + + +E  +D++   + +    
Sbjct: 104 R--RKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDALR-QVGLENYA 158

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT----NLVKLLRDMAHQG 218
           ++    LSGG ++R+ +A  L  NP I+ +DE  + LD L  T     LVKL     HQ 
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKL--QAKHQR 216

Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           T++  +     A  + + D + ++  G     GT
Sbjct: 217 TIVFISHDLDEA--MRIGDRIAIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 68/263 (25%), Positives = 104/263 (39%), Gaps = 65/263 (24%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           S++ K+ILK ++      E+  I+GP+GSGK+ L   +AG+      E  SG I      
Sbjct: 9   SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH---PSYEVTSGTI-----L 60

Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS----------------- 141
            +               +LL+  L  +E     A L L  QY                  
Sbjct: 61  FKGQ-------------DLLE--LEPDER--ARAGLFLAFQYPEEIPGVSNLEFLRSALN 103

Query: 142 --RKAKESKVDSIADSLSISTCK--------NTLTKHL----SGGQKKRLSIALELLSNP 187
             R A+  +   + D L +   K          L + +    SGG+KKR  I    L  P
Sbjct: 104 ARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP 163

Query: 188 SIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGT-MIICTLHQPSASLLNM--ADYLYVLT 243
            +  LDE  +GLD ++A  +V + +  +       +I T +Q    LLN    DY++VL 
Sbjct: 164 KLAILDEIDSGLD-IDALKIVAEGINRLREPDRSFLIITHYQ---RLLNYIKPDYVHVLL 219

Query: 244 EGYCTYQGTVPGLVPYLSDFGYQ 266
           +G     G    L   L + GY 
Sbjct: 220 DGRIVKSGD-VELAKELEEKGYD 241

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 56/242 (23%)

Query: 31  LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           +YY + ++ IK  D+    +GVF       ++GPSG GK+ LL             T + 
Sbjct: 12  VYYGS-NHVIKGVDLKIPQNGVFA------LMGPSGCGKSTLL------------RTFNR 52

Query: 91  YIEINE-TRLQ---------------DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL 134
            +E+NE  R++               D   +R+E   + Q       LT+ ++  VA  +
Sbjct: 53  LLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDN--VAIGV 110

Query: 135 KLGNQYSRKAKESKV-----------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
           KL      K +  +            D + D L      N    +LSGGQ++RL IA  L
Sbjct: 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRL------NDYPSNLSGGQRQRLVIARAL 164

Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT 243
              P I+ +DEPT  +D +    + +LL ++  + T+++ T H P A    ++DY+  L 
Sbjct: 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT-HSP-AQAARVSDYVAFLY 222

Query: 244 EG 245
            G
Sbjct: 223 LG 224

Length = 253

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 29/212 (13%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN---SGYIEINETRL 99
           K  L DI+      +++ ++GPSG GK+  L  L    R     +N    G + ++   +
Sbjct: 17  KQALNDINLPIYENKITALIGPSGCGKSTFLRCL---NRMNDLISNVKIEGEVLLDGKNI 73

Query: 100 QDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
            D  +    LRK    + Q  N           +++  ++  G +      + ++D I +
Sbjct: 74  YDKDVDVVELRKRVGMVFQKPNPF--------PMSIYDNVAYGPRIHGIKDKKELDKIVE 125

Query: 155 -SLSIST----CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
            +L  +      K+ L K    LSGGQ++RL IA  +   P +I +DEPT+ LD ++   
Sbjct: 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185

Query: 207 LVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
           +  L+ ++  + T++I T +   AS   ++DY
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQAS--RVSDY 215

Length = 251

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 41/248 (16%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F ++SY   Y     Y  ++   + D++  F   +   I+G +GSGK+ L+  +    +P
Sbjct: 5   FDNVSY--TYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59

Query: 83  KKTETNSGYIEI-NETRLQDHRMLRKESCYIMQ--------DNLLQELL--------TVE 125
                    I I ++T+ +  R +RK    + Q        D + +E++         ++
Sbjct: 60  TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119

Query: 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS 185
           E    A  L +   +SR           D +S S  +      +SGGQ ++++I   L  
Sbjct: 120 EVKNYAHRLLMDLGFSR-----------DVMSQSPFQ------MSGGQMRKIAIVSILAM 162

Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTE 244
           NP II LDEPT GLD  +   +++LL+ +   +   II   H  +  +   AD + V+ E
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221

Query: 245 GYCTYQGT 252
           G    Q +
Sbjct: 222 GSIVSQTS 229

Length = 286

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 15/189 (7%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
           L +I+   +   ++ ++GPSG GK+  L       D++ G +           I  N   
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           + + R  RK        N    L+++ ++++    +  G +  +K  E    S+  S   
Sbjct: 83  ILELR--RKIGMVFQTPNPF--LMSIYDNISYGPKIH-GTKDKKKLDEIVEQSLKKSALW 137

Query: 159 STCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
           +  K+ L  +   LSGGQ++RL IA  L   P++I +DEPT+ LD ++   + +L+ ++ 
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197

Query: 216 HQGTMIICT 224
              T+II T
Sbjct: 198 ESYTIIIVT 206

Length = 254

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 56.3 bits (137), Expect = 2e-08
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 31/192 (16%)

Query: 37  SYSIKSKDI--LKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
            +    + I  L ++S       L +       ++G SG+GK+ L+  +    RP     
Sbjct: 10  VFPQGGRTIHALNNVS-------LHIPAGEIFGVIGASGAGKSTLIRCINLLERP----- 57

Query: 88  NSGYIEINE---TRL--QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYS 141
            SG + ++    T L  ++ R  R++   I Q  NLL    TV ++  VA  L+L     
Sbjct: 58  TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR-TVFDN--VALPLELAGT-P 113

Query: 142 RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
           +   +++V  + + + +S   +     LSGGQK+R++IA  L SNP ++  DE T+ LD 
Sbjct: 114 KAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173

Query: 202 LNATNLVKLLRD 213
               ++++LL+D
Sbjct: 174 ATTRSILELLKD 185

Length = 343

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 53/228 (23%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET----RLQD 101
           +K ++   +SK ++ I+GPSG GK+  L  +        +   +G +  +      +  D
Sbjct: 55  VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114

Query: 102 HRMLRKESCYIMQ----------DNL--------------LQELLTVEESLTVAAHLKLG 137
             +LRK+   + Q          DN+              L+E+  VE+SL         
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI--VEKSL--------- 163

Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
               RKA  +  D ++D L     KN L   LSGGQ++RL +A  L   P I+ LDEPT+
Sbjct: 164 ----RKA--ALWDEVSDRLD----KNALG--LSGGQQQRLCVARTLAVEPEILLLDEPTS 211

Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
            LD      +  L++++    T++I T +   AS   ++DY     EG
Sbjct: 212 ALDPKATAKIEDLIQELRGSYTIMIVTHNMQQAS--RVSDYTMFFYEG 257

Length = 286

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 39/172 (22%)

Query: 42  SKDILKDI-----SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
            + +L  +     +G FV+     ++G SG GK+ LL +LAG   P   E  +G   + E
Sbjct: 24  ERTVLNQLDLHIPAGQFVA-----VVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE 78

Query: 97  ----TRL--QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
               TRL  QD R+L  +    + DN+                L L  Q+   A ++   
Sbjct: 79  AREDTRLMFQDARLLPWKK---VIDNV---------------GLGLKGQWRDAALQA--- 117

Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
               ++ ++   N     LSGGQK+R+++A  L+  P ++ LDEP   LD L
Sbjct: 118 --LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167

Length = 257

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-------NET 97
           +L+++S    + E  V+ GPSGSGK+ LL  L     P     + G I +       +  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----DEGQILVRHEGEWVDLV 80

Query: 98  RLQDHRML---RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
             +   +L   R    Y+ Q   L+ +  V  +L V A   L     R+   +K   +  
Sbjct: 81  TAEPREVLEVRRTTIGYVSQ--FLRVIPRVS-ALDVVAEPLLARGVPREVARAKAADLLT 137

Query: 155 SLSISTCKNTLT-KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
            L++     +L     SGG+++R++IA   + +  I+ LDEPT  LD  N   +V+L+R+
Sbjct: 138 RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197

Query: 214 MAHQGTMIICTLH 226
              +G  ++   H
Sbjct: 198 AKARGAALVGIFH 210

Length = 235

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 39/201 (19%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETR 98
           L DIS  F   +++ ++GPSG GK+  L       D++ G R         G I ++   
Sbjct: 22  LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-------VEGEILLDGEN 74

Query: 99  LQDHRM----LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV---- 149
           + D  +    LR+    + Q  N   +  ++ E+  VA  L++     +     +V    
Sbjct: 75  IYDPHVDVVELRRRVGMVFQKPNPFPK--SIFEN--VAYGLRVNGVKDKAYLAERVERSL 130

Query: 150 ------DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
                 D + D L  S         LSGGQ++RL IA  L   P ++ +DEP + LD + 
Sbjct: 131 RHAALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184

Query: 204 ATNLVKLLRDMAHQGTMIICT 224
              + +L+ ++  + T+II T
Sbjct: 185 TQKIEELIHELKARYTIIIVT 205

Length = 253

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLL 118
           ++G SGSGK+ +  ++AG  +P      SG I  +    ++    +L      + QD  L
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPW-----SGEILFDGIPREEIPREVLANSVAMVDQDIFL 564

Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKV-DSIA------DSLSISTCKNTLTKHLSG 171
            E  TV ++LT+           R  K++ + D I       D+       N     LSG
Sbjct: 565 FEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN-----LSG 618

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           GQ++RL IA  L+ NPSI+ LDE T+ LD
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALD 647

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 33/227 (14%)

Query: 40  IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
              + IL  IS      +   I+G SG+GK+ +L +L  +R     + NSG I I+   +
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL--FRF---YDVNSGSITIDGQDI 327

Query: 100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
           +D   + LR+    + QD       TV  + T+A ++K G      A   +V + A++  
Sbjct: 328 RDVTQQSLRRAIGIVPQD-------TVLFNDTIAYNIKYGRP---DATAEEVGAAAEAAQ 377

Query: 158 ISTCKNTL-----TK------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
           I     +L     T        LSGG+K+R++IA  +L NP I+ LDE T+ LD      
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437

Query: 207 LVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +   LR+++  + T++I   H+ S ++++ AD + VL  G    +GT
Sbjct: 438 IQAALREVSAGRTTLVIA--HRLS-TIID-ADEIIVLDNGRIVERGT 480

Length = 497

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 52/232 (22%)

Query: 34  DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI- 92
           D H Y  K K+ +K I   F   +++ ++GPSGSGK+  L  L            +G I 
Sbjct: 25  DLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83

Query: 93  ----EINETRLQDHRMLRKESCYIMQ----------DNLL-----------QELL-TVEE 126
               +IN   +  + M RK    + Q          +N+            + L   VE 
Sbjct: 84  YRGIDINRKEINVYEM-RKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142

Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
           SL  AA                 D + D L     K+ LT  LSGGQ++RL IA  +   
Sbjct: 143 SLKQAALW---------------DQVKDDLH----KSALT--LSGGQQQRLCIARAIAVK 181

Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
           P I+ +DEP + LD ++   L + + ++    T+II T +   A+    +DY
Sbjct: 182 PDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAA--RASDY 231

Length = 267

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 55.7 bits (135), Expect = 5e-08
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 21/165 (12%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-----DHRMLRKESCYIMQD 115
           ++G SGSGK+ L   L      +      G I  +   +      + R LR+    + QD
Sbjct: 318 LVGESGSGKSTLGLALLRLIPSQ------GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371

Query: 116 --NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKH---L 169
               L   +TV + +     +    + S   ++ +V    ++L  +     T  ++    
Sbjct: 372 PYGSLSPRMTVGQIIEEGLRV-HEPKLSAAERDQRV---IEALEEVGLDPATRNRYPHEF 427

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
           SGGQ++R++IA  L+  P +I LDEPT+ LD      ++ LLRD+
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472

Length = 534

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 36  HSYSIKSKDILKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETN---- 88
              S+  + ++K +  V +     E+  I+G SG+GKT L  I+AG   P   E N    
Sbjct: 288 RYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG 346

Query: 89  SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RKA--- 144
             ++++ +         ++    + Q+  L    TV ++LT A  L+L ++ +  KA   
Sbjct: 347 DEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVIT 406

Query: 145 ------KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
                  E K + I D              LS G++ R+++A  L+  P I+ LDEPT  
Sbjct: 407 LKMVGFDEEKAEEILDKY---------PDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457

Query: 199 LD 200
           +D
Sbjct: 458 MD 459

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 21/101 (20%)

Query: 124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL 183
           VEESL  AA   L ++   +   S +D                  LSGGQ++RL IA  +
Sbjct: 157 VEESLRRAA---LWDEVKDQLDSSGLD------------------LSGGQQQRLCIARAI 195

Query: 184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
             +P +I +DEP + LD +  + +  L+ ++A + T++I T
Sbjct: 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT 236

Length = 285

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 55.1 bits (134), Expect = 6e-08
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 70/202 (34%)

Query: 43  KDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
           K ILKDIS       LS        +LG +G+GK+ LL I+AG       +      E  
Sbjct: 20  KQILKDIS-------LSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDK-----EFE 61

Query: 96  -ETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVA-AHLK--------LGNQYS--- 141
            E R             Y+ Q+  L    TV E++    A +K        +   Y+   
Sbjct: 62  GEARPAPGI-----KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116

Query: 142 --------RKAK-------------ESKVDSIADSLSISTC--KNTLTKHLSGGQKKRLS 178
                    + +             +S+++   D+L    C   +     LSGG+++R++
Sbjct: 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR---CPPWDAKVTKLSGGERRRVA 173

Query: 179 IALELLSNPSIIFLDEPTTGLD 200
           +   LL  P ++ LDEPT  LD
Sbjct: 174 LCRLLLEKPDMLLLDEPTNHLD 195

Length = 556

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 25/188 (13%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
            Y+     +LK++S    + E   I+G +G+GK+ L  ILA +R     E   G IEI+ 
Sbjct: 15  RYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRF---LEAEEGKIEIDG 69

Query: 96  -ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
            +        LR     I QD  L        S T+ ++L   ++YS        + I  
Sbjct: 70  IDISTIPLEDLRSSLTIIPQDPTLF-------SGTIRSNLDPFDEYSD-------EEIYG 115

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
           +L +S        +LS GQ++ L +A  LL  P ++ LDE T  +DY     + K +R+ 
Sbjct: 116 ALRVSEGGL----NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171

Query: 215 AHQGTMII 222
               T++ 
Sbjct: 172 FTNSTILT 179

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 55.2 bits (134), Expect = 7e-08
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 27/176 (15%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEINE----TRLQDH-RMLRKESCYIM 113
           ILGP+G GKT  + IL+G   P     E    + E+ +    T LQ++ + L      ++
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163

Query: 114 QDNLLQELL------TVEESLTVAAHLKLGNQYSRKAKES-KVDSIADSLSISTCKNTLT 166
                 +L+       V E L             +K  E  K+D + + L +    +   
Sbjct: 164 HKPQYVDLIPKVFKGKVRELL-------------KKVDERGKLDEVVERLGLENILDRDI 210

Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
             LSGG+ +R++IA  LL +    F DEPT+ LD     N+ +L+R++A    +++
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLV 266

Length = 590

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 19/185 (10%)

Query: 63  GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
           G +G+GKT LL ++AG   P+K E       I     +D    +K+ C++   + +   L
Sbjct: 34  GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK----KDLCTYQKQLCFVGHRSGINPYL 89

Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
           T+ E+     H   G           +  +    S+    +     LS GQK+++++   
Sbjct: 90  TLRENCLYDIHFSPGAV--------GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRL 141

Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
            +S   +  LDEP   LD L+   ++  +++   +G  ++ T HQ     LN ADY    
Sbjct: 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADY---- 195

Query: 243 TEGYC 247
            E Y 
Sbjct: 196 -EEYH 199

Length = 200

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 30/180 (16%)

Query: 38  YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           Y      IL +IS    + E  +I GPSG GK+ LL I+A    P               
Sbjct: 15  YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP----------TSGTL 64

Query: 98  RLQDHRML-------RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
             +   +        R++  Y  Q   L          TV  +L    Q   +  +    
Sbjct: 65  LFEGEDISTLKPEIYRQQVSYCAQTPTLF-------GDTVYDNLIFPWQIRNQQPDPA-- 115

Query: 151 SIADSLS-ISTCKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN 206
              D L   +     LTK+   LSGG+K+R+S+   L   P ++ LDE T+ LD  N  N
Sbjct: 116 IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175

Length = 225

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 63/264 (23%)

Query: 40  IKSKDILKDISGVFVSKELSV---------ILGPSGSGKTKLLDILAGYRRPKKTE---- 86
           I+ K++ K   G  V K +S          ILG SG+GK+ L+ +L G  + + T     
Sbjct: 1   IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60

Query: 87  ------TNSGYIEI------------NETRLQD----------HRMLRKESCYIMQDNLL 118
                    GY+E                  ++           R +RK    IM    L
Sbjct: 61  YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA-IM----L 115

Query: 119 QELLTVEESLTVAAH-LKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---KHLSGGQK 174
           Q    +    TV  + L+   +   + KE+ V    D + +    + +T   + LSGG+K
Sbjct: 116 QRTFALYGDDTVLDNVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHIARDLSGGEK 174

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG------TMIICTLHQP 228
           +R+ +A +L   P +   DEPT  LD   A    KL+ +   +       +M++ T H P
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTA----KLVHNALEEAVKASGISMVL-TSHWP 229

Query: 229 SASLLNMADYLYVLTEGYCTYQGT 252
              + +++D    L  G    +GT
Sbjct: 230 EV-IEDLSDKAIWLENGEIKEEGT 252

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQGTMIICTLH 226
           LSGGQK+R+S+A  + S+  I  LD+P + +D     ++ +  +L  + +  T I+ T H
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT-H 186

Query: 227 QPSASLLNMADYLYVLTEG 245
           Q    LL  AD + VL  G
Sbjct: 187 QL--QLLPHADQIVVLDNG 203

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 23/196 (11%)

Query: 55  SKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEIN--ETRLQDHRML 105
           +K++   +GPSG GK+ LL       D++ G     K E    Y + N  ++++   ++ 
Sbjct: 45  AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG----AKVEGRLLYRDRNIYDSQINSVKLR 100

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
           R+      + N   +  ++ E++  A      N Y     E   DS+  +      K+ L
Sbjct: 101 RQVGMVFQRPNPFPK--SIYENIAFAPR---ANGYKGNLDELVEDSLRRAAIWEEVKDKL 155

Query: 166 TKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
            +    LSGGQ++RL IA  +   P ++ +DEP + LD ++   + +L  ++  Q T+I+
Sbjct: 156 KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215

Query: 223 CTLHQPSASLLNMADY 238
            T +   AS   +AD+
Sbjct: 216 VTHNMQQAS--RVADW 229

Length = 274

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEINETRLQDHRM 104
           L++I+ V    E   I+G +GSGK+ L   L G  RP+K +   SG    + ++LQ    
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG--- 74

Query: 105 LRKESCYIMQDNLLQEL-LTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           +RK    + Q+   Q +  TVEE L     +L L     RK    +VD     + +   +
Sbjct: 75  IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK----RVDRALAEIGLEKYR 130

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           +   K LSGGQ + +++A  L   P  +  DE T+ LD  +   +++ ++ +  +G  I+
Sbjct: 131 HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190

Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV--PYLSDFGYQCPS 269
              H  +   L+ AD + V+  G    +G    ++    L   G   PS
Sbjct: 191 YITH--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPS 237

Length = 274

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 17/197 (8%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRM 104
           L +IS          ++G +GSGK+ L+       +P       +GY    ET  ++ + 
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ----YSRKAKESKVDSIADSLSIST 160
           LRK+   + Q     E    E   TV   ++ G +       +AKE  +  +        
Sbjct: 83  LRKKVSLVFQ---FPEAQLFEN--TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED 137

Query: 161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
             +     LSGGQ +R++IA  +   P I+ LDEP  GLD      +++L +D    G  
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197

Query: 221 IICTLHQPSASLLNMAD 237
           +I   H       NM D
Sbjct: 198 VILVTH-------NMDD 207

Length = 287

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 55/215 (25%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKT-----ETNSGYIE 93
           +K++       +++  +GPSG GK+ +L       D++ G+R   K         +  ++
Sbjct: 26  VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85

Query: 94  INETRLQDHRMLRK-----ESCYIMQDNL------------LQELLTVEESLTVAAHLKL 136
             E R +   + +K     +S Y   DN+            + EL  VE SL  AA   L
Sbjct: 86  PVEVRRRIGMVFQKPNPFPKSIY---DNIAYGARINGYKGDMDEL--VERSLRQAA---L 137

Query: 137 GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
            ++   K K+S        LS           LSGGQ++RL IA  +   P +I +DEP 
Sbjct: 138 WDEVKDKLKQS-------GLS-----------LSGGQQQRLCIARAIAVQPEVILMDEPC 179

Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
           + LD ++   + +L+ ++  Q T+II T +   A+
Sbjct: 180 SALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214

Length = 264

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 25/218 (11%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            LKDIS      E   I+G +G+GK+ LL ++AG  +P      SG +++          
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-----SGKVKVTG-------- 88

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
             K +  I         LT  E++ +   L LG   +RK  + KVD I +   +    + 
Sbjct: 89  --KVAPLIELGAGFDPELTGRENIYLRG-LILG--LTRKEIDEKVDEIIEFAELGDFIDQ 143

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL---VKLLRDMAHQGTMI 221
             K  S G   RL+ ++     P I+ LDE    L   +A      ++ L ++  +   I
Sbjct: 144 PVKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNELVEKNKTI 200

Query: 222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY 259
           +   H   A +    D    L  G    +G+   ++P 
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSPEEVIPA 237

Length = 249

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 55/209 (26%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDIL----AGYRRPKKTETNSGYIEINETRL-- 99
           LK+I+      +++  +GPSG GK+ LL         Y  P++     G I ++   +  
Sbjct: 29  LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY--PEQRAE--GEILLDGENILT 84

Query: 100 --QDHRMLRKESCYIMQ----------DNL-----LQELLT-------VEESLTVAAHLK 135
             QD  +LR +   + Q          DN+     L E L+       VE +LT AA   
Sbjct: 85  PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA--- 141

Query: 136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP 195
           L N+   K  +S       SLS             GGQ++RL IA  +   P ++ LDEP
Sbjct: 142 LWNEVKDKLHQS-----GYSLS-------------GGQQQRLCIARGIAIRPEVLLLDEP 183

Query: 196 TTGLDYLNATNLVKLLRDMAHQGTMIICT 224
            + LD ++   + +L+ ++    T++I T
Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVT 212

Length = 260

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           LSGGQK+R+++A  L   P  +  DEPT GLD      ++++  ++  QG  II   H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHR 103
           +K +S      +   I+G +GSGK+ L  +LAG   P      SG I IN+  L   D+ 
Sbjct: 29  VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGEILINDHPLHFGDYS 83

Query: 104 MLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS---- 157
              K    I QD    L   L + + L     L+L      + +  +   I ++L     
Sbjct: 84  FRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQ---IFETLRMVGL 138

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           +    N     L+ GQK+R+++A  L+  P II  DE    LD    + L+ L+ ++  +
Sbjct: 139 LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198

Query: 218 GTMIICTLHQPSASLLNMADYLYVLTEG 245
             +    + Q    + +++D + V+ EG
Sbjct: 199 QGISYIYVTQHIGMIKHISDQVLVMHEG 226

Length = 267

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 65/264 (24%), Positives = 104/264 (39%), Gaps = 73/264 (27%)

Query: 1   MKSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
           M  E+ E        ++H  L  +D+S   +YY         K  + DIS       ++ 
Sbjct: 4   MVREKIE-IAPFPEAKEHI-LEVKDLS---IYYG-------EKRAVNDISMDIEKHAVTA 51

Query: 61  ILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEINETRLQDHRM----LRKES 109
           ++GPSG GK+  L       D++   R       + G I      + D  +    LR+E 
Sbjct: 52  LIGPSGCGKSTFLRSINRMNDLIPSAR-------SEGEILYEGLNILDSNINVVNLRREI 104

Query: 110 CYIMQ----------DNLLQELL------------TVEESLTVAAHLKLGNQYSRKAKES 147
             + Q          +N+   L              VEESLT AA               
Sbjct: 105 GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW------------- 151

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
             D + D L  S         LSGGQ++RL IA  L   P+++ LDEP + LD ++   +
Sbjct: 152 --DEVKDRLHSSALS------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203

Query: 208 VKLLRDMAHQGTMIICTLHQPSAS 231
            +L+ ++  + ++II T +   A 
Sbjct: 204 EELITELKEEYSIIIVTHNMQQAL 227

Length = 268

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDHRMLRKE 108
           E+ VI+G SGSGK+ L+ +L     P       G I +        +   L++ R  RK+
Sbjct: 55  EIFVIMGLSGSGKSTLVRLLNRLIEP-----TRGEILVDGKDIAKLSAAELRELR--RKK 107

Query: 109 SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168
              + Q   L    TV E+  VA  L++     +  +E +     + + +    +     
Sbjct: 108 ISMVFQSFALLPHRTVLEN--VAFGLEVQGV-PKAEREERALEALELVGLEGYADKYPNE 164

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           LSGG ++R+ +A  L ++P I+ +DE  + LD L  T +
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203

Length = 386

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 26/203 (12%)

Query: 60  VILGPSGSGKTKLLDILAG---YRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQ 114
            ++GPSG+GKT LL+ L G   Y+         G ++IN  E R  D    RK   ++ Q
Sbjct: 380 ALVGPSGAGKTSLLNALLGFLPYQ---------GSLKINGIELRELDPESWRKHLSWVGQ 430

Query: 115 DNLLQELLTVEESLTVAAHL----KLGNQYSRKAKESK-VDSIADSLSISTCKNTLTKHL 169
           +  L    T+ +++ +        +L  Q    A  S+ +  +   L            L
Sbjct: 431 NPQLPHG-TLRDNVLLGNPDASDEQL-QQALENAWVSEFLPLLPQGLDTPIGDQAAG--L 486

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
           S GQ +RL++A  LL    ++ LDEPT  LD  +   +++ L   + + T ++ T HQ  
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQLE 545

Query: 230 ASLLNMADYLYVLTEGYCTYQGT 252
             L    D ++V+ +G    QG 
Sbjct: 546 D-LAQW-DQIWVMQDGQIVQQGD 566

Length = 588

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 49.3 bits (119), Expect = 6e-07
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           LS G+++ + IA  L  N  ++ LDEPT  L       L K++R +  QG  +I
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---LSGGQK 174
           L  L T+E+ L     L L     R+A   ++ +  D + I      LT +   LSGG++
Sbjct: 105 LNPLHTLEKQL--YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN 234
           +R+ IA+ LL+ P ++  DEPTT LD      +++LLR++  +  M +  +    + +  
Sbjct: 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222

Query: 235 MADYLYVLTEGYCTYQGT 252
           +AD + V+  G C  Q  
Sbjct: 223 LADRVAVMQNGRCVEQNR 240

Length = 529

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 12/81 (14%)

Query: 169 LSGGQKKRLSIALELL------SNPSIIFLDEPTTGLDYLNATN-LVKLLRDMAHQGT-- 219
            SGG+K   S+ + L       SN  I+ LDEPTT LD  N    L +++ +   Q    
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175

Query: 220 MIICTLHQPSASLLNMADYLY 240
           +I+ T  +    L++ AD++Y
Sbjct: 176 LIVITHDE---ELVDAADHIY 193

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 59/217 (27%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM- 104
           LK +S     K ++ ++GPSG GK+  L  L       K     G +E++   +    + 
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 105 ---LRKESCYIMQ----------DN--------------LLQELL----------TVEES 127
              LRK    + Q          +N              LL  LL           VE S
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180

Query: 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
           L  AA                 D + D L      N L   LSGGQ++RL IA  L  +P
Sbjct: 181 LRQAALW---------------DEVNDRLD----DNALG--LSGGQQQRLCIARCLAVDP 219

Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
            +I +DEP + LD +  + +  L+ ++A + T+++ T
Sbjct: 220 EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT 256

Length = 305

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDHRMLRKE 108
           E+ VI+G SGSGK+ LL  +     P      SG + I        +   L++ R  RK+
Sbjct: 51  EIFVIMGLSGSGKSTLLRCINRLIEP-----TSGKVLIDGQDIAAMSRKELRELR--RKK 103

Query: 109 SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH 168
              + Q   L    TV E+  VA  L++     R  +E +     + + +   ++     
Sbjct: 104 ISMVFQSFALLPHRTVLEN--VAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYPDE 160

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
           LSGG ++R+ +A  L  +P I+ +DE  + LD L
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           LSGG+++RL+ A  LL  P  +FLDE T+ LD  +   L +LL+++   G  +I   H+P
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148

Query: 229 S 229
           S
Sbjct: 149 S 149

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 29/222 (13%)

Query: 34  DTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           D  S+S++  +IL              + G  G+G+T+L+  L G   P K E   G + 
Sbjct: 277 DDVSFSLRRGEILG-------------VAGLVGAGRTELVQALFG-AYPGKFE---GNVF 319

Query: 94  INETRLQDH---RMLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKES 147
           IN   +      + +R     + +D     +   L V +++T++  LK      R    +
Sbjct: 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSV-LKSFCFKMRIDAAA 378

Query: 148 KVDSIADS---LSISTCKNTL-TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           ++  I  +   L + T    L    LSGG +++  +A  LL+NP ++ LDEPT G+D   
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438

Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
              + KL+  +A +G  II  +    A +L ++D + V+ EG
Sbjct: 439 KYEIYKLINQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEG 479

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 49/186 (26%)

Query: 60  VILGPSGSGKTKLLDILAG---YRRPKKTETNSGYIEINETRLQDHRM------------ 104
           +I G SG+GKT LL  LAG   +         SG I +      D  +            
Sbjct: 423 LITGESGAGKTSLLRALAGLWPWG--------SGRISMP----ADSALLFLPQRPYLPQG 470

Query: 105 -LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
            LR+  CY        +     E + V   + LG+   R  +E + D +           
Sbjct: 471 TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRV----------- 515

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
                LSGG+++RL+ A  LL  P  +FLDE T+ LD      L +LL++       +I 
Sbjct: 516 -----LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVIS 569

Query: 224 TLHQPS 229
             H+P+
Sbjct: 570 VGHRPT 575

Length = 604

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 28/256 (10%)

Query: 7   ELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPS 65
           EL D    PR+ +    + +    +  D  S++ +    +L++I+    S+    ++G +
Sbjct: 320 ELMD---GPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHT 376

Query: 66  GSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLT 123
           GSGK+ L  +L GY    +     G I ++   L    H +LR+    + QD        
Sbjct: 377 GSGKSTLASLLMGYYPLTE-----GEIRLDGRPLSSLSHSVLRQGVAMVQQD-------P 424

Query: 124 VEESLTVAAHLKLGNQYSRKA-----KESKVDSIADSLS--ISTCKNTLTKHLSGGQKKR 176
           V  + T  A++ LG   S +      +  ++  +A SL   + T       +LS GQK+ 
Sbjct: 425 VVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL 484

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           L++A  L+  P I+ LDE T  +D      + + L  +    T+++   H+   S +  A
Sbjct: 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIA-HR--LSTIVEA 541

Query: 237 DYLYVLTEGYCTYQGT 252
           D + VL  G    QGT
Sbjct: 542 DTILVLHRGQAVEQGT 557

Length = 592

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 30/162 (18%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
           +LGPSG GKT +L ++AG  +P       G I I+   +    + +++ C + Q      
Sbjct: 37  LLGPSGCGKTTVLRLVAGLEKP-----TEGQIFIDGEDVTHRSIQQRDICMVFQ------ 85

Query: 121 LLTVEESLTVAAHLKLGNQ--YSRK----AKESKVDSIADSLSI---STCKNTLTKHLSG 171
                 S  +  H+ LG    Y  K     KE +   + ++L +   +  ++     +SG
Sbjct: 86  ------SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISG 139

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           GQ++R+++A  L+  P ++  DEP + LD     NL + +R+
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMRE 177

Length = 351

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 23/177 (12%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y  K    L++I+    + +   ++G SGSGK+ + ++L  +      + + G I +
Sbjct: 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----YDIDEGEILL 402

Query: 95  NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
           +   L+D+ +  LR +   + Q+ +L  +  T+  ++  A       QYSR+  E +   
Sbjct: 403 DGHDLRDYTLASLRNQVALVSQNVHLFND--TIANNIAYAR----TEQYSREQIE-EAAR 455

Query: 152 IADSLS-ISTCKNTLTK-------HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +A ++  I+   N L          LSGGQ++R++IA  LL +  I+ LDE T+ LD
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512

Length = 582

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           LSGGQ++RL IA  L   P II  DEPT+ LD ++   +  L+ ++    T++I T +  
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQ 214

Query: 229 SASLLNMADY 238
            A+   ++DY
Sbjct: 215 QAA--RISDY 222

Length = 258

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 169 LSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           LSGG+K+  ++AL L    L    +  LDE   GLD  +   L + + +   +G  +I  
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137

Query: 225 LHQPSASLLNMADYLY 240
            H P   L  +AD L 
Sbjct: 138 THLP--ELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
           LSGGQ++R+ IA  L  NP +I  DEP + LD      ++ LL+D+
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL 155

Length = 268

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 20/129 (15%)

Query: 161 CKNTLTKH---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ 217
           CK+ L +    LSGGQ++RL IA  +   P +I +DEP + LD ++   + + + ++   
Sbjct: 144 CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN 203

Query: 218 GTMIICTLHQPSASLLNMADYLYV--LTEGY--CTYQGTVPGLVPYLSDFG-----YQCP 268
            T++I T H       NM   + V  +T  +     +G   G V YL +F      +  P
Sbjct: 204 FTIVIVT-H-------NMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255

Query: 269 SNYNPADYV 277
                 DY+
Sbjct: 256 KQKATQDYI 264

Length = 269

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 57  ELSVILGPSGSGKTKLLDILAGY----RRPKKTETNSGYIEINETRLQDHRMLRKES-CY 111
           E+ V++G SGSGK+ LL  + G     R     +   G +++        R LR      
Sbjct: 51  EICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSM 110

Query: 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
           + Q   L    TVEE+  VA  L++     +  +  +VD   + + ++   +     LSG
Sbjct: 111 VFQQFALLPWRTVEEN--VAFGLEMQGM-PKAERRKRVDEQLELVGLAQWADRKPGELSG 167

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           G ++R+ +A    +   I+ +DEP + LD L  T L
Sbjct: 168 GMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQL 203

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 58/229 (25%), Positives = 91/229 (39%), Gaps = 72/229 (31%)

Query: 31  LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPK 83
           L+Y         K  L DIS       ++  +GPSG GK+ LL       D++   R   
Sbjct: 33  LFYG-------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI-- 83

Query: 84  KTETNSGYIEINETRLQDHRM----LRK-------------ESCY-----------IMQD 115
                 G I ++   + D ++    LR+             +S Y           I   
Sbjct: 84  -----EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR 138

Query: 116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
            +L E   VE SL  AA                 D + D L     +N     LSGGQ++
Sbjct: 139 RVLDE--AVERSLRGAALW---------------DEVKDRLH----ENAFG--LSGGQQQ 175

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           RL IA  +   P ++ LDEPT+ LD ++   + +L+ ++  + T++I T
Sbjct: 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVT 224

Length = 272

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 130 VAAHLKLGNQYSRKAKESKVD-SIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLS 185
           V A LKL    ++K  +  V+ S+  +   +  K+ L K    LSGGQ++RL IA  +  
Sbjct: 106 VVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165

Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
            P ++ +DEP + LD ++   +  L+ ++    T++I T
Sbjct: 166 EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT 204

Length = 258

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 67/227 (29%)

Query: 31  LYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLL---DILAGYRRPKKTET 87
           L+Y        SK IL DI+     +E++  +GPSG GK+  L   + +  +    K + 
Sbjct: 13  LWYG-------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVK- 64

Query: 88  NSGYIEINE----TRLQDHRMLRKESCYIMQ----------DNL---------------L 118
             G ++I+     +   +  +LR +   + Q          DN+               L
Sbjct: 65  --GELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKL 122

Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178
            E+  VE+SLT                    + + D L  S  +      LSGGQ++RL 
Sbjct: 123 DEI--VEKSLT---------------SVGLWEELGDRLKDSAFE------LSGGQQQRLC 159

Query: 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICT 224
           IA  +   P+++ +DEP + LD + ATN+++ L++++    T+I+ T
Sbjct: 160 IARAIAVKPTMLLMDEPCSALDPV-ATNVIENLIQELKKNFTIIVVT 205

Length = 251

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 2   KSEEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVI 61
                +           F L   +I    L ++   + I                   ++
Sbjct: 28  LGLTLDRGLNVGIKLLPFLLDENEIEIP-LEFEIEEFLIDGIRYRYGFELDKEDILEELL 86

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
                  +       +     K  E       + E  L  +  L            L+ L
Sbjct: 87  YEYRKGEELLFERERSKESFEKSPEKKRELRGLREVLLLLNLSLSSFL----LLASLEIL 142

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           L++    +         +         V  +     +      L K +S G K+ L++ L
Sbjct: 143 LSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLL 202

Query: 182 ELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
            LLS     S++ +DEP  GL       LV+LL++++ +G  +I T H P 
Sbjct: 203 ALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253

Length = 256

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 25/217 (11%)

Query: 46  LKDISGV-FVSKELSV----ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           ++D++G  F +  L V    ILG +G   +G+T+L + L G R  +         EIN  
Sbjct: 271 VEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330

Query: 98  RLQDHRMLRKESCYIMQDNLLQELLTVEESLT--VAAHLKLGNQ--YSRKAKESKV-DSI 152
                  L +   Y+ +D      L ++  L   V A L    +  + + A+E+ V +  
Sbjct: 331 STAQR--LARGLVYLPEDRQ-SSGLYLDAPLAWNVCA-LTHNRRGFWIKPARENAVLERY 386

Query: 153 ADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
             +L+I         + LSGG ++++ IA  L ++P ++ +DEPT G+D     ++ +L+
Sbjct: 387 RRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446

Query: 212 RDMAHQGT---MIICTLHQPSASLLNMADYLYVLTEG 245
           R +A Q      I   L +    +  MAD + V+ +G
Sbjct: 447 RSIAAQNVAVLFISSDLEE----IEQMADRVLVMHQG 479

Length = 510

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 52/240 (21%)

Query: 45   ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK-------------------- 84
            I KD++    SK+ + I+G +GSGK+ ++ +L  +   K                     
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242

Query: 85   ---TETNSGYIEINETRLQ------DHRMLRKESCYIMQDNL---------LQELLTVEE 126
                E N G   +NE  L       +   + K S  I+ D +         L+ L ++  
Sbjct: 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVS 1302

Query: 127  ------SLTVAAHLKLGNQ------YSRKAKESKVDSIADSL--SISTCKNTLTKHLSGG 172
                  ++++  ++K G +        R  K + +D   +SL     T      K LSGG
Sbjct: 1303 QEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362

Query: 173  QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL 232
            QK+R++IA  LL  P I+ LDE T+ LD  +   + K + D+  +    I T+    AS+
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI 1422

Length = 1466

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 44/276 (15%)

Query: 41  KSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           K  D+  L  +S      E   I+G +GSGK+    ++ G       E   G ++I+   
Sbjct: 16  KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----FEEFEGKVKIDGEL 70

Query: 99  LQDHRM--LRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIAD 154
           L    +  LR++   + Q+   Q +  TVE+ +       + NQ   R+    +VD    
Sbjct: 71  LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALL 126

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL---L 211
           ++++   K      LSGGQK+R+++A  +   P II LDE T+ LD      ++++   +
Sbjct: 127 AVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186

Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG-----------YCTYQGTVP-GL-VP 258
           ++      + I      +AS    +D + V+  G           + T +  V  GL VP
Sbjct: 187 KEKYQLTVLSITHDLDEAAS----SDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242

Query: 259 YLSDF-------GYQCPSNYNPADYVIEVSLEADRM 287
           + S+        G+  P  Y   D ++E  L AD++
Sbjct: 243 FSSNLMKDLRKNGFDLPEKYLSEDELVE--LLADKL 276

Length = 277

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
           SGG ++RL IA  L+++P ++F+DEPT GLD      L+ LLR
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195

Length = 258

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%)

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS---LSISTCKNTLT-KHLSGGQKKR 176
           ++ V +++T+AA L      SR    +++ +I +S   L + T    L    LSGG +++
Sbjct: 355 VMGVGKNITLAA-LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413

Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASL---L 233
             +A  LL NP I+ LDEPT G+D      + KL+  +  QG  II      S+ L   L
Sbjct: 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI----SSELPEVL 469

Query: 234 NMADYLYVLTEG 245
            ++D + V+ EG
Sbjct: 470 GLSDRVLVMHEG 481

Length = 506

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 50/196 (25%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L+++        L V+ G SGSGK+ L+              N G     + RL      
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLV--------------NEGLYASGKARLISFLPK 56

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
              +  I  D L Q L+ V   L    +L LG    +K               ST     
Sbjct: 57  FSRNKLIFIDQL-QFLIDV--GLG---YLTLG----QKL--------------ST----- 87

Query: 166 TKHLSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
              LSGG+ +R+ +A EL S P  ++  LDEP+TGL   +   L+++++ +   G  +I 
Sbjct: 88  ---LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144

Query: 224 TLHQPSASLLNMADYL 239
             H     +L+ AD++
Sbjct: 145 IEHNL--DVLSSADWI 158

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 25/213 (11%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L +I+    + +L++I+G  G GK+ LL  + G  +  + + +      +E   +  R  
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 106 RKES-CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI------ 158
            + S  Y  Q   L    TVEE++T       G+ ++++  ++  D+ +    I      
Sbjct: 77  NRYSVAYAAQKPWLLNA-TVEENIT------FGSPFNKQRYKAVTDACSLQPDIDLLPFG 129

Query: 159 -STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL-----DYLNATNLVKLLR 212
             T       +LSGGQ++R+ +A  L  N +I+FLD+P + L     D+L    ++K L+
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
           D   + T+++ T H+     L  AD++  + +G
Sbjct: 190 D--DKRTLVLVT-HK--LQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 24/217 (11%)

Query: 38  YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           + ++ K +L+D+S      +L+V+LG +GSGK+ LL  L                EI+E 
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ------------FEISEG 715

Query: 98  RLQDHRMLR--KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
           R+   R +    +  +IM   +   +L  +E    AA L    + S+   E+ +  +   
Sbjct: 716 RVWAERSIAYVPQQAWIMNATVRGNILFFDEE--DAARLADAVRVSQL--EADLAQLGGG 771

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDM 214
           L     +  +  +LSGGQK R+S+A  + +N  +  LD+P + LD      +V+      
Sbjct: 772 LETEIGEKGV--NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829

Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
               T ++ T HQ    ++  ADY+  L +G   + G
Sbjct: 830 LAGKTRVLAT-HQ--VHVVPRADYVVALGDGRVEFSG 863

Length = 1560

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 14/177 (7%)

Query: 61  ILGPSGSGKTK----LLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           I+G SGSGK++    L+ +LA   R   + T +G   +N    + +++  ++   I QD 
Sbjct: 47  IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106

Query: 117 L--LQELLTVEESLTVAAHLKLGNQYSRK-AKESKVDSIADSLSISTCKNTLTKH---LS 170
           +  L   + V E L     L L    S+  A E  V  + D++ +   +  +  +    S
Sbjct: 107 MTSLNPYMRVGEQLMEV--LMLHKGMSKAEAFEESV-RMLDAVKMPEARKRMKMYPHEFS 163

Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLH 226
           GG ++R+ IA+ LL  P ++  DEPTT LD      ++ LL ++  +  T II   H
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220

Length = 330

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 20/195 (10%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKE--SCYIMQ 114
           EL  ++G +GSGK+ L  +L G  +P+  E       ++  +L+D+R L     S Y + 
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409

Query: 115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK 174
           D LL         L +   L+   +     K S  D        S  K      LS GQK
Sbjct: 410 DQLLGPEGKASPQL-IEKWLQ---RLELAHKTSLNDG-----RFSNLK------LSTGQK 454

Query: 175 KRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
           KRL++ L LL    I+ LDE     D          LL  +  QG  I    H       
Sbjct: 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYF 512

Query: 234 NMADYLYVLTEGYCT 248
             AD L  +  G  +
Sbjct: 513 IHADRLLEMRNGQLS 527

Length = 546

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)

Query: 61  ILGPSG---SGKTKLLDILAGYRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYI 112
           ILG SG   +G+T+L+ +L G   P+     SGY+     E+     QD   L     YI
Sbjct: 280 ILGVSGLMGAGRTELMKVLYG-ALPRT----SGYVTLDGHEVVTRSPQDG--LANGIVYI 332

Query: 113 MQDNLLQEL---LTVEE--SLTVAAHL-KLGNQYSRKAKESKVDSIADSLSIST-CKNTL 165
            +D     L   ++V+E  SLT   +  + G       ++  V       +I T      
Sbjct: 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII-CT 224
              LSGG +++++IA  L++ P ++ LDEPT G+D      + +L+     +G  II  +
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452

Query: 225 LHQPSASLLNMADYLYVLTEG 245
              P   +L M+D + V+ EG
Sbjct: 453 SEMP--EVLGMSDRILVMHEG 471

Length = 501

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%)

Query: 50  SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
            G     E+  ILGP+G GKT  + +LAG  +P            +E   +D ++  K  
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP------------DEGSEEDLKVSYKPQ 408

Query: 110 CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL 169
            YI  D       TVE+ L  A     G+ Y +         I   L++          L
Sbjct: 409 -YISPD----YDGTVEDLLRSAIRSAFGSSYFK-------TEIVKPLNLEDLLERPVDEL 456

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           SGG+ +R++IA  L     +  LDEP+  LD
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLD 487

Length = 591

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 169 LSGGQKKRLSIALELLS---NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
           LSGG+ +RL +A ELL+    P++  LDEPTTGL   +   L+ +L+ + HQG  ++   
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869

Query: 226 HQPSASLLNMADYL 239
           H  +  ++ +ADY+
Sbjct: 870 H--NMHVVKVADYV 881

Length = 1809

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 39/210 (18%)

Query: 43  KDILKDISGVFVSKELSVIL---------GPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           K I+K   GV     + + +         G +G+GK+ L+ IL+G   P  T     Y  
Sbjct: 5   KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWS 63

Query: 94  INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA--------- 144
            +  +  + R   +    I+     QEL  V E L+VA ++ LGN+ +            
Sbjct: 64  GSPLKASNIRDTERAGIVIIH----QELTLVPE-LSVAENIFLGNEITLPGGRMAYNAMY 118

Query: 145 -------KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
                  +E ++D+   +  +            GGQ++ + IA  L     ++ LDEP++
Sbjct: 119 LRAKNLLRELQLDADNVTRPVG--------DYGGGQQQLVEIAKALNKQARLLILDEPSS 170

Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
            L       L+ ++RD+   G   +   H+
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHK 200

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           LSGGQ++RL IA  L   P +I +DEPT+ LD ++   + +L++++    ++II T
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVT 223

Length = 271

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 36/210 (17%)

Query: 37  SYSIKSKDI----LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           +Y    K +    L+   G     E+  ILGP+G GKT  + +LAG  +P + +      
Sbjct: 2   TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD 61

Query: 93  EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
            ++               Y  Q        TV + L         + Y+    +++   I
Sbjct: 62  TVS---------------YKPQYIKADYEGTVRDLL----SSITKDFYTHPYFKTE---I 99

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY---LNATNLVK 209
           A  L I    +     LSGG+ +R++IA  L  +  I  LDEP+  LD    L A+ +++
Sbjct: 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159

Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYL 239
              +   +   ++   H      + M DYL
Sbjct: 160 RFAENNEKTAFVV--EHD-----IIMIDYL 182

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 23/222 (10%)

Query: 40  IKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET 97
           + S+D   ++DIS      E+    G  GSG+T+L++ L G    +      G I +N  
Sbjct: 271 VTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRA----GGEIRLNGK 325

Query: 98  RLQ---DHRMLRKESCYIMQ---DNLLQELLTVEESLTVAAHLKLGNQ------YSRKAK 145
            +        ++K   YI +   DN      ++ +++ ++  LK G        +    +
Sbjct: 326 DISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE 385

Query: 146 ESKVDSIADSLSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           +   ++  + L++   +    +T+ LSGG ++++ I+  L   P +I  DEPT G+D   
Sbjct: 386 QRTAENQRELLALKCHSVNQNITE-LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444

Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG 245
              + K++R +A  G +I+  +      ++ + D + V  EG
Sbjct: 445 KAEIYKVMRQLADDGKVIL-MVSSELPEIITVCDRIAVFCEG 485

Length = 510

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 63  GPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
           G +G+GK+ L+ +L+G Y  P  T       E  E +  + R   +    I+     QEL
Sbjct: 38  GENGAGKSTLMKVLSGVY--PHGTYEGEIIFEGEELQASNIRDTERAGIAIIH----QEL 91

Query: 122 LTVEESLTVAAHLKLGNQYSRK------AKESKVDSIADSLSISTCKNTLTKHLSGGQKK 175
             V+E L+V  ++ LGN+ +        A   +   +   L +     T   +L  GQ++
Sbjct: 92  ALVKE-LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150

Query: 176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
            + IA  L     ++ LDEPT  L       L+ ++RD+   G  I C
Sbjct: 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG--IAC 196

Length = 506

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 23/190 (12%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRRPKKTETNSGYIEINETRLQD 101
            L D+S      E   I+G +GSGK+   +L+D L         E  SG I I+   L +
Sbjct: 22  TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--------LEAESGQIIIDGDLLTE 73

Query: 102 HRM--LRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSL 156
             +  +R +   + Q  DN      TVE+   VA    L N+    +  + +V+   + +
Sbjct: 74  ENVWDIRHKIGMVFQNPDNQFVGA-TVEDD--VA--FGLENKGIPHEEMKERVNEALELV 128

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-- 214
            +   K      LSGGQK+R++IA  +   P II LDE T+ LD      L+K ++ +  
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188

Query: 215 AHQGTMIICT 224
            +Q T+I  T
Sbjct: 189 DYQMTVISIT 198

Length = 279

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 21/220 (9%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
             K  L D++      E  VILG +GSGK+ +   +     P + +    Y++  +T  +
Sbjct: 21  TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV---YVDGLDTSDE 77

Query: 101 DHRM-LRKESCYIMQ--DNLLQELLT-VEESLTVAAHLKLGNQYSRKAKE--SKVDSIAD 154
           ++   +R ++  + Q  DN  Q + T VEE +       LG       +E   +VD    
Sbjct: 78  ENLWDIRNKAGMVFQNPDN--QIVATIVEEDVAFGPE-NLGIP----PEEIRERVDESLK 130

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            + +   +      LSGGQK+R++IA  L   P  I  DEPT  LD      +V  ++++
Sbjct: 131 KVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190

Query: 215 --AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
              +  T+I+ T +   A     AD + V+  G    +GT
Sbjct: 191 NKKYGITIILITHYMEEAV---EADRIIVMDSGKVVMEGT 227

Length = 280

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 45/229 (19%)

Query: 40  IKSKDILKDISGVFVSK---------ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG 90
           + ++ I K  SGV V K         E+  +LG +G+GK+ L+ I+AG   P     +SG
Sbjct: 12  LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----DSG 66

Query: 91  YIEINETRL------QDHRMLRKESCYIM-QDNLLQELLTVEESLTV--AAHLKLGNQYS 141
            +EI           + H++      Y++ Q+ LL   L+V+E++            +  
Sbjct: 67  TLEIGGNPCARLTPAKAHQL----GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMK 122

Query: 142 RKAKES----KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
           +          +DS A SL ++              ++ + I   L+ +  I+ LDEPT 
Sbjct: 123 QLLAALGCQLDLDSSAGSLEVA-------------DRQIVEILRGLMRDSRILILDEPTA 169

Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
            L       L   +R++  QG  I+   H+    +  +AD + V+ +G 
Sbjct: 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGT 217

Length = 510

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 19/195 (9%)

Query: 55  SKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKE--SCY 111
             ++  I+G +G GK+ L  +  G   P++ E    G     ++R  D+R L     + +
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR-DDYRDLFSAIFADF 425

Query: 112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG 171
            + D+L+        SL  A       QY ++ +      IAD + I     + T  LS 
Sbjct: 426 HLFDDLIGPDEGEHASLDNA------QQYLQRLE------IADKVKIEDGGFSTTTALST 473

Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSA 230
           GQ+KRL++    L +  I+  DE     D         +LL D+  QG  II   H    
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD-- 531

Query: 231 SLLNMADYLYVLTEG 245
               +AD +  L  G
Sbjct: 532 QYFELADQIIKLAAG 546

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 141 SRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
                +S    + DS+ + T    T    LSGG ++++ I   LL+ P I+ LDEPT G+
Sbjct: 363 DNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422

Query: 200 DYLNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEG 245
           D      + +L+ ++A +   +II +   P   LL + D + V++ G
Sbjct: 423 DVGAKFEIYQLIAELAKKDKGIIIISSEMP--ELLGITDRILVMSNG 467

Length = 491

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 37/229 (16%)

Query: 6   AELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPS 65
           A   D+K  P +     FQDI  S  +       +  + +L++++      ++  ++G S
Sbjct: 368 ASELDIKGLPNE-----FQDILES--FGVRQR--VIERYVLRNLNLEIKPGDVVAVVGQS 418

Query: 66  GSGKTKLLDILAGY---RRPKKTETNSGYIEINETRLQDHRMLRKESCY---IMQDNLLQ 119
           G+GKT LL ++ G    R  +K   +SG +E+ +  +        E  +    + ++L  
Sbjct: 419 GAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478

Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
           +   +  ++ +     L +    + K S+                    LS GQK+R  +
Sbjct: 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSE--------------------LSTGQKERAKL 518

Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLH 226
           A  L   P+++ +DE    LD L A  + + + ++A +   T+I+ T  
Sbjct: 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567

Length = 593

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
              LKD+S      E   ++G +G+GK+ LL +LAG   P     +SG + +        
Sbjct: 35  FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----DSGTVTVR------- 82

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
               + S  +         LT  E++ +   L LG   SRK  + K+D I +   +    
Sbjct: 83  ---GRVSSLLGLGGGFNPELTGRENIYLNGRL-LG--LSRKEIDEKIDEIIEFSELGDFI 136

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
           +   K  S G K RL+ A+     P I+ +DE
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 25/237 (10%)

Query: 41  KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN----SGYIEINE 96
           + + IL+D+S       ++ +LG +G+GK+ LL  LAG              +G + +N 
Sbjct: 12  RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGGAPRGARVTGDVTLNG 70

Query: 97  TRLQ--DHRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQYSRKAKESKVDSI 152
             L   D   L +    + Q        +  E   L    H +     + +  E    ++
Sbjct: 71  EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALEL---------LSNPSIIFLDEPTTGLDYLN 203
           A + + +     +T  LSGG+  R+  A  L            P  + LDEPT  LD  +
Sbjct: 131 ALAGATALVGRDVTT-LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189

Query: 204 ATNLVKLLRDMA---HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV 257
              L+  +R +A   + G + I  +H P+ +    AD + +L +G     G    ++
Sbjct: 190 QHRLLDTVRRLARDWNLGVLAI--VHDPNLA-ARHADRIAMLADGAIVAHGAPADVL 243

Length = 272

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 45/181 (24%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTK----LLDILAGYRRPKKTETNSGYIEINETR 98
             ++K+IS      E   ++G SGSGK+     LL ++           + G I  +   
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----------SQGEIWFDGQP 348

Query: 99  LQD---HRML--RKESCYIMQD---------NLLQELLTVEESLTVAAHLKLGNQYSRKA 144
           L +    ++L  R     + QD         N+LQ    +EE L V  H       S   
Sbjct: 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ---IIEEGLRV--HQP---TLSAAQ 400

Query: 145 KESKVDSIADSLSISTCKNTLTKH-----LSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
           +E +V ++ + + +    +  T+H      SGGQ++R++IA  L+  PS+I LDEPT+ L
Sbjct: 401 REQQVIAVMEEVGL----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456

Query: 200 D 200
           D
Sbjct: 457 D 457

Length = 529

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           LSGG+ +R++IA  LL N +    DEP+  LD     N  + +R ++ +G      +   
Sbjct: 72  LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

Query: 229 SASLLNMADYLYVLTEG-------YCTYQGTVPGLVPYLSDFG 264
            A L  ++D ++V  EG           +GT  G+  +L  + 
Sbjct: 132 LAVLDYLSDRIHVF-EGEPGVYGIASQPKGTREGINRFLRGYL 173

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 30/181 (16%)

Query: 61  ILGPSGSGKT----KLLDIL-AGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD 115
           ++G SGSGK+      L IL AG R+       +G + ++   +    +  ++   IMQ+
Sbjct: 34  LVGGSGSGKSLTCAAALGILPAGVRQ------TAGRVLLDGKPVAPCALRGRKIATIMQN 87

Query: 116 -----NLLQELLTVEESLTVAAH-LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH- 168
                N L          T+  H  +      + A ++ + +  +++ +      L  + 
Sbjct: 88  PRSAFNPLH---------TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYP 138

Query: 169 --LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTL 225
             +SGG  +R+ IAL LL     I  DEPTT LD +    ++ LL   +  +   ++   
Sbjct: 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198

Query: 226 H 226
           H
Sbjct: 199 H 199

Length = 254

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
           D + D L +S         LSGGQ++RL IA  + + P ++ LDEP + LD +    + +
Sbjct: 137 DEVKDKLKVSGLS------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190

Query: 210 LLRDMAHQGTMIICT 224
           L+ ++    T+ + T
Sbjct: 191 LMVELKKDYTIALVT 205

Length = 261

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 22/164 (13%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           S S   + +L D+S      ++  +LGP+G+GK+ L+ ++ G   P     + G I+   
Sbjct: 11  SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----DEGVIK--- 62

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
              ++ + LR    Y+ Q   L   L     LTV   L+L        K+  +      +
Sbjct: 63  ---RNGK-LRIG--YVPQKLYLDTTL----PLTVNRFLRL----RPGTKKEDILPALKRV 108

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
                 +   + LSGG+ +R+ +A  LL+ P ++ LDEPT G+D
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152

Length = 251

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 66/219 (30%)

Query: 42  SKDILKDISGVFVSKELSVILGPSGSGKTKLL-------DILAGYRRPKKTETNSGYIEI 94
            K  L D+      K ++  +GPSG GK+  L       D + G R        +G I +
Sbjct: 31  EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV-------TGKITL 83

Query: 95  NETRLQDHRM----LRKESCYIMQ----------DNL---------------LQELLTVE 125
           +   + D R+    LR     + Q          +N+               L E+  VE
Sbjct: 84  DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEI--VE 141

Query: 126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS 185
            SL             RKA     + + D L            LSGGQ++RL IA  +  
Sbjct: 142 TSL-------------RKA--GLWEEVKDRLHEPGTG------LSGGQQQRLCIARAIAV 180

Query: 186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT 224
           +P +I +DEP + LD +    + +L+ ++    T++I T
Sbjct: 181 SPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVT 219

Length = 267

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           LSGGQK+R+SIA  ++ NP I+ LDE T+ LD
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD 611

Length = 1466

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 24/197 (12%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
            ++I+ K++  D+S  F+   ++ I G +G GK+ LL ++AG  +P     +SG I    
Sbjct: 8   QFNIEQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----SSGNIYYKN 61

Query: 97  TRLQDHRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
             + +   + K  C  +  NL L+  +TV E+L   + +            +  +++  +
Sbjct: 62  CNINN---IAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----------NSAETLYAA 107

Query: 156 LSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
           +      + L +    LS G +K ++IA  +     +  LDE  T L   N   L  L+ 
Sbjct: 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV 167

Query: 213 DMAHQGTMIICTLHQPS 229
             A+ G +++ + H  S
Sbjct: 168 MKANSGGIVLLSSHLES 184

Length = 195

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 38/240 (15%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEIN 95
           ++S+    +LK+IS      +L  + G +GSGK+ LL ++ G   P + +  +SG I  +
Sbjct: 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFS 492

Query: 96  ETRLQDHRMLRKESCYIM----QDNLLQELLTVE---ESLTVAAHLKLGNQYSRKAKESK 148
                       ++ +IM    +DN++  L   E    S+  A  L           E  
Sbjct: 493 -----------PQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL-----------EED 530

Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
           +    +       +  +T  LSGGQ+ R+S+A  +  +  +  LD P T LD +    + 
Sbjct: 531 IALFPEKDKTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588

Query: 209 K--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQ 266
           +  L + M+++ T I+ T        L  AD + +L EG C + GT   L     DF   
Sbjct: 589 ESCLCKLMSNK-TRILVT---SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSL 644

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMII 222
           LSGG+ +R+ +A EL    +  ++  LDEPTTGL + +   L+++L+ +  +G T+++
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVV 887

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 61  ILGPSGSGKT-KLLDILAGYRRPKKTETNSGYIEINETRLQD------HRMLRKESCYIM 113
           I+G SGSGK+   L I+     P +       +E N   LQ         ++  E   I 
Sbjct: 38  IVGESGSGKSVSSLAIMGLIDYPGRVMAEK--LEFNGQDLQRISEKERRNLVGAEVAMIF 95

Query: 114 QDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---KH 168
           QD +  L    TV   +  A  +K+    ++K +  +   + + + I    + L      
Sbjct: 96  QDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ 153

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
           LSGG  +R+ IA+ +   P ++  DEPTT LD      +++LL ++  +  M
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM 205

Length = 326

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 38/229 (16%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTET-NSGYIEINETRLQDHR 103
           +LK+I+      E+  I G +GSGKT LL ++ G   P + +  +SG I  +        
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSS------- 104

Query: 104 MLRKESCYIM----QDNLLQELLTVE---ESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
               +  +IM    ++N++  +   E   +S+  A  L           E  +    +  
Sbjct: 105 ----QFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL-----------EEDITKFPEKD 149

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDM 214
           +    +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD      + +  + + M
Sbjct: 150 NTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207

Query: 215 AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           A++ T I+ T        L  AD + +L EG   + GT   L     DF
Sbjct: 208 ANK-TRILVT---SKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--D 101
           + +K +S      +   I+G +GSGK+ L  +LAG   P      SG + I++  L   D
Sbjct: 27  EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGELLIDDHPLHFGD 81

Query: 102 HRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
           +    +    I QD    L     + + L     L+L      + +E ++      + + 
Sbjct: 82  YSYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLL 139

Query: 160 TCKNTLTKH-LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
               +   H L+ GQK+RL +A  L+  P +I  DE    LD    + L+ L+
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192

Length = 267

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           ++K I       E  V++GPSG GK+ LL ++AG  R       SG I I    + +  +
Sbjct: 19  VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE--L 71

Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-ESKVDSIADSLSISTC 161
              +    M  Q+  L   ++V E++  A  LK   +   KA+ E +V   A  L +   
Sbjct: 72  EPADRDIAMVFQNYALYPHMSVRENM--AYGLK--IRGMPKAEIEERVAEAARILELEPL 127

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
            +   + LSGGQ++R+++   ++  P++   DEP + LD
Sbjct: 128 LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 60  VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL---QDHRMLRKESCYIMQDN 116
             +G +GSGK+ L   LAG       E  S +  I  TRL   Q  +++  E     Q N
Sbjct: 33  AFVGANGSGKSALARALAGELPLLSGERQSQFSHI--TRLSFEQLQKLVSDE----WQRN 86

Query: 117 LLQELLTVEES---LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
              ++L+  E     T A  ++   +       ++ + +A    I+   +   K+LS G+
Sbjct: 87  N-TDMLSPGEDDTGRTTAEIIQDEVK-----DPARCEQLAQQFGITALLDRRFKYLSTGE 140

Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
            ++  +   L+S P ++ LDEP  GLD  +   L +LL  +   G
Sbjct: 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185

Length = 490

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 45/170 (26%)

Query: 61  ILGPSGSGKTKLLDILAG----------YRR----------PKKTETNS-------GYIE 93
           ++G +G+GK+ L+ IL G          Y +          P +    +       G  E
Sbjct: 34  LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93

Query: 94  INETRLQDHRMLRKESCYIMQD---NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD 150
             E   + H +       +  D     L EL  ++E L      +L         E++++
Sbjct: 94  QAEYLKRYHDISHL----VETDPSEKNLNELAKLQEQLDHHNLWQL---------ENRIN 140

Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
            +   L +    +     LSGG  ++ ++   L+SNP ++ LDEPT  LD
Sbjct: 141 EVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR---LQDHRM--LRKESCYIMQD 115
           ++G SGSGK+       G    +  E+  G I  N  R   L   ++  LR++  +I QD
Sbjct: 355 LVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409

Query: 116 NL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-LSGG 172
               L    TV +S  +   L++      KA  ++V  + + + +         H  SGG
Sbjct: 410 PYASLDPRQTVGDS--IMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467

Query: 173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
           Q++R+ IA  L  NP +I  DE  + LD      ++ LL D+
Sbjct: 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509

Length = 623

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           SGGQ++R++IA  L+ +P ++  DEP + LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 66/246 (26%), Positives = 105/246 (42%), Gaps = 33/246 (13%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           S++ K IL+ ++      E+  I+GP+GSGK+ L   LAG    +  E   G +E    +
Sbjct: 10  SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEF---K 63

Query: 99  LQDHRMLRKE----SCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
            +D   L  E        M      E+  V     +   L     Y  +    + D   D
Sbjct: 64  GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFD-FQD 122

Query: 155 SLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA- 204
            +      +   ++ LT+ +    SGG+KKR  I    +  P +  LDE  +GLD ++A 
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181

Query: 205 ---TNLVKLLRDMAHQGTMIICTLHQPSASLLNM--ADYLYVLTEGYCTYQGTVPGLVPY 259
               + V  LRD   + + II T +Q    +L+    DY++VL +G     G    LV  
Sbjct: 182 KIVADGVNSLRD--GKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSGDF-TLVKQ 235

Query: 260 LSDFGY 265
           L + GY
Sbjct: 236 LEEQGY 241

Length = 248

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG--TMIICTLH 226
           LSGGQK R++ A      P I+ LDEP+  LD      L++ L  +  QG   M+    H
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--VLFQGGVLMVSHDEH 685

Query: 227 QPSASLLNMADYLYVLTEGYCT-YQGT 252
             S S+    D L+V++EG  T + GT
Sbjct: 686 LISGSV----DELWVVSEGKVTPFHGT 708

Length = 718

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 164 TLTKHLSGGQKKRLSIALELLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           T  K LSGG++ RL +A  L   PS ++ LDEPT  LD      L +LL    +QGT+++
Sbjct: 436 TPVKALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLL 492

Length = 635

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 30/145 (20%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQ 119
           +LG +G+GK+ L+ +LAG   P      SG I + +  +L           Y  Q  L  
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPV-----SGEIGLAKGIKLG----------YFAQHQL-- 385

Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS---ISTCKNT-LTKHLSGGQKK 175
           E L  +ES     HL      +R A +     + D L        K T  T+  SGG+K 
Sbjct: 386 EFLRADES--PLQHL------ARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA 437

Query: 176 RLSIALELLSNPSIIFLDEPTTGLD 200
           RL +AL +   P+++ LDEPT  LD
Sbjct: 438 RLVLALIVWQRPNLLLLDEPTNHLD 462

Length = 638

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMII 222
           LSGG+ +R+ +A EL    +  ++  LDEPTTGL + +   L+++L  +  +G T+I+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880

Length = 935

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 37 SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
          S +   K +LKDIS      +   ++G +G+GK+ LL ++AG   P
Sbjct: 7  SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
             LSGG++ R+ +A  L S  +++ LDEPT  LD
Sbjct: 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 144 AKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
             E++  SI   LS +   +   TK  SGG + R+++A  L   P ++ LDEPT  LD
Sbjct: 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376

Length = 718

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICT--L 225
           +SGGQK+R+S+A  + SN  +   D+P + LD      +  K ++D     T ++ T  L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800

Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
           H      L+  D + ++ EG    +GT
Sbjct: 801 H-----FLSQVDRIILVHEGMIKEEGT 822

Length = 1622

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 169 LSGGQKKRLSIAL-----ELLSNPSII---FLDEPTTGLDYLNATNLVKLLRDMAHQGTM 220
           LSGG++   S+AL     +LL   + +   FLDEP   LD      L ++L ++   G  
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875

Query: 221 IICTLHQPSASLLNMADYLYVLT 243
           II   H     L   AD    + 
Sbjct: 876 IIIISHVE--ELKERADVRIRVK 896

Length = 908

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY 79
          S+   +ILK ++      E+  I+GP+GSGK+ L  ++AG+
Sbjct: 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56

Length = 252

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 388 NNLSLLFFSTMFLMFTALSSMIITYPLEFEITRRE---HFNRWFSLKAYYLATMVADIPV 444
           +  +      +  +   + ++II   +  E   R          S   Y L  ++ D+ V
Sbjct: 91  SGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLV 150

Query: 445 QLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMILD-VKNGVIFG 503
            L+  +I    +  +    +      + LL+ +   L    +G L+G +    +  ++  
Sbjct: 151 GLIQLLII---LLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVI 207

Query: 504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYD 551
            + +L  + F G      + P   +++F +      ++G+L  +YG  
Sbjct: 208 SILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	612
KOG0061|consensus	613		100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0065|consensus	1391		100.0
KOG0065|consensus	1391		100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
KOG0058|consensus	716		100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0055|consensus	1228		100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
KOG0057|consensus	591		100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
KOG0055|consensus	1228		100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
KOG0056|consensus	790		100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
KOG0059|consensus	885		100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
KOG0054|consensus	1381		99.97
KOG0054|consensus	1381		99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.97
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.95
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.95
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.95
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.94
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.94
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.94
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.94
COG4178	604	ABC-type uncharacterized transport system, permeas	99.93
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.93
KOG0927|consensus	614		99.92
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.92
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.92
KOG0927|consensus	614		99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.9
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.88
KOG0060|consensus	659		99.88
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.87
KOG0062|consensus	582		99.87
KOG2355|consensus	291		99.86
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.86
KOG0066|consensus	807		99.84
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.84
KOG0062|consensus	582		99.84
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.84
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.81
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.81
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.81
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.8
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.8
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.78
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.78
KOG0064|consensus	728		99.77
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.76
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.75
KOG0066|consensus	807		99.75
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.72
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.72
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.64
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.64
KOG0063|consensus	592		99.63
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.57
PRK00064	361	recF recombination protein F; Reviewed	99.55
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.53
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.53
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.5
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.49
KOG0063|consensus	592		99.48
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.45
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.42
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.41
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.4
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.4
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.38
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.37
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.36
PRK14079	349	recF recombination protein F; Provisional	99.32
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.31
PHA02562	562	46 endonuclease subunit; Provisional	99.3
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.3
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.29
cd01128	249	rho_factor Transcription termination factor rho is	99.29
PRK10869	553	recombination and repair protein; Provisional	99.26
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.26
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.25
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.24
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.24
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.23
PRK13695	174	putative NTPase; Provisional	99.21
PRK15066	257	inner membrane transport permease; Provisional	99.21
COG3910	233	Predicted ATPase [General function prediction only	99.15
PRK03918	880	chromosome segregation protein; Provisional	99.13
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.12
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.12
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.11
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.1
PRK01156	895	chromosome segregation protein; Provisional	99.06
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.03
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.98
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.94
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.93
COG0842	286	ABC-type multidrug transport system, permease comp	98.92
PRK06067	234	flagellar accessory protein FlaH; Validated	98.91
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.9
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.84
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.83
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.83
PRK02224	880	chromosome segregation protein; Provisional	98.8
smart00382	148	AAA ATPases associated with a variety of cellular	98.8
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.79
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.75
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.65
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.63
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.62
TIGR00611	365	recf recF protein. All proteins in this family for	98.62
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.6
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.59
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.56
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.55
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.51
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.48
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.44
PRK09825	176	idnK D-gluconate kinase; Provisional	98.43
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.38
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.38
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.3
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.24
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.21
PRK06315	442	type III secretion system ATPase; Provisional	98.2
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.19
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.18
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.18
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.14
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.12
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.09
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.08
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.05
PRK01889	356	GTPase RsgA; Reviewed	98.04
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.03
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.02
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.02
PRK08149	428	ATP synthase SpaL; Validated	98.01

>KOG0061|consensus

Probab=100.00  E-value=3.7e-110  Score=938.86  Aligned_cols=582  Identities=35%  Similarity=0.606  Sum_probs=515.3

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ...++.++|+|++++.+.+     ....|++|+|||++++|||++||||||||||||||++|+|+....  ...+|+|++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~-----~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilv   92 (613)
T KOG0061|consen   20 YLEPVKLSFRNLTLSSKEK-----SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILL   92 (613)
T ss_pred             ccccceeEEEEEEEEecCC-----CCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEE
Confidence            4557789999999987542     114688999999999999999999999999999999999998742  358999999


Q ss_pred             CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC-----CC
Q psy12625         95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK-----HL  169 (612)
Q Consensus        95 ~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~-----~L  169 (612)
                      ||++ .+.+.+++.+|||.|||.++|++||+|++.|++++|+|...++++++++|+++++++||.+++|++++     ++
T Consensus        93 NG~~-~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi  171 (613)
T KOG0061|consen   93 NGRP-RDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL  171 (613)
T ss_pred             CCcc-CchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc
Confidence            9977 55577899999999999999999999999999999999888899999999999999999999999997     59


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|
T Consensus       172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy  251 (613)
T KOG0061|consen  172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY  251 (613)
T ss_pred             ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccChhhHHhhcCCCCCCCCCchhHHHHhcc-c--cccccccccCCCcccccC-CcchHhHHHHHHhhcCCccchhcc
Q psy12625        250 QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSL-E--ADRMFEPCTNGKFFNANS-SHNTKTVLKTIEEKGLSSKEFYSV  325 (612)
Q Consensus       250 ~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  325 (612)
                      +|+++++.+||++.|++||++.||+||++|++. +  .+...+..+........+ .....+... ...+ .    +...
T Consensus       252 ~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~----~~~~  325 (613)
T KOG0061|consen  252 SGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE-ALEK-S----LSTS  325 (613)
T ss_pred             ecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH-HHhh-h----cccc
Confidence            999999999999999999999999999999873 1  111111111100000000 000000000 0000 0    0001


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy12625        326 LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTAL  405 (612)
Q Consensus       326 ~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~  405 (612)
                      .+.+....++||.|+++|++|.+++.+|||.+...|+++.+++|+++|.+||+++++..+++++.|++||.+.++.|.++
T Consensus       326 ~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~  405 (613)
T KOG0061|consen  326 KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSM  405 (613)
T ss_pred             cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111127899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHH
Q psy12625        406 SSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQG  485 (612)
Q Consensus       406 ~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~  485 (612)
                      ++++..|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|+++++.+|++|++++++..+++++
T Consensus       406 ~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s  485 (613)
T KOG0061|consen  406 FGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAES  485 (613)
T ss_pred             HhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCC--cc
Q psy12625        486 MGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEE--YC  562 (612)
Q Consensus       486 ~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~--~C  562 (612)
                      +|+++|++ ++...|++++|++++++++|+|||++.++||.||+|++|+||++|++||++.|||+.  ....|...  .|
T Consensus       486 ~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~--~~~~~~~~~~~~  563 (613)
T KOG0061|consen  486 LGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG--GSSRCFLSGNLC  563 (613)
T ss_pred             HHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc--cccccccCcCCc
Confidence            99999999 889999999999999999999999999999999999999999999999999999973  35567432  56


Q ss_pred             ccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy12625        563 HFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNKS  612 (612)
Q Consensus       563 ~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~~  612 (612)
                      ...+|.++++..++++.+.|.|+.++++++++|++++|++|+++.|++++
T Consensus       564 ~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~  613 (613)
T KOG0061|consen  564 CESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR  613 (613)
T ss_pred             ccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            67899999999999999999999999999999999999999999999875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.1e-106  Score=919.32  Aligned_cols=582  Identities=26%  Similarity=0.441  Sum_probs=483.7

Q ss_pred             CCCceeEEEEeEEEEEEeecc-------------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHH
Q psy12625         15 PRKHFNLLFQDISYSALYYDT-------------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI   75 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~-------------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~   75 (612)
                      .+.++.+++.|++|+.+....                   .+++++++++|+|+|+++++||++||+||||||||||||+
T Consensus        34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i  113 (659)
T PLN03211         34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA  113 (659)
T ss_pred             CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence            345789999999999854310                   0123346789999999999999999999999999999999


Q ss_pred             HHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q psy12625         76 LAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS  155 (612)
Q Consensus        76 l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~  155 (612)
                      |+|+.+|.   ..+|+|.+||+++.  ...++.+|||+|++.+++.+||+||+.+++.++.+...++++++++++++++.
T Consensus       114 LaG~~~~~---~~sG~I~inG~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~  188 (659)
T PLN03211        114 LAGRIQGN---NFTGTILANNRKPT--KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE  188 (659)
T ss_pred             HhCCCCCC---ceeEEEEECCEECc--hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            99998752   25899999999853  23456799999999999999999999998877665445566677889999999


Q ss_pred             cCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        156 LSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       156 lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      +||++++|+++     ++||||||||++||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++||++.
T Consensus       189 lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~  268 (659)
T PLN03211        189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS  268 (659)
T ss_pred             cCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            99999887654     5699999999999999999999999999999999999999999999999889999999999986


Q ss_pred             HHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccc--ccccCCC-----cccccCCc
Q psy12625        231 SLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMF--EPCTNGK-----FFNANSSH  303 (612)
Q Consensus       231 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~  303 (612)
                      ++.++||++++|++|++++.|+++++.+||++.|++||++.|||||++|++....+..  ...+...     ...+.+..
T Consensus       269 ~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (659)
T PLN03211        269 RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL  348 (659)
T ss_pred             HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc
Confidence            7899999999999999999999999999999999999999999999999983211100  0000000     00111000


Q ss_pred             ch--HhHHHHHHhhcCCccch----hcc-cCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q psy12625        304 NT--KTVLKTIEEKGLSSKEF----YSV-LSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMY  376 (612)
Q Consensus       304 ~~--~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f  376 (612)
                      ..  ..............+..    ... ......+.++||+|+++|++|++++ +||+.+...|+++++++|+++|++|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf  427 (659)
T PLN03211        349 APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW  427 (659)
T ss_pred             cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            00  00000000000000000    000 0011224578999999999999988 8999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhh
Q psy12625        377 RGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTV  456 (612)
Q Consensus       377 ~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~  456 (612)
                      |+++  ..++++|.|++||+++++.+.++++++..|+.||+||.||+.+|+|++++|++|++++|+|+.++.+++|++|+
T Consensus       428 ~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~  505 (659)
T PLN03211        428 WHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVT  505 (659)
T ss_pred             hcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            9985  67899999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             hccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccCh
Q psy12625        457 YFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSF  535 (612)
Q Consensus       457 Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp  535 (612)
                      |||+||++++.+|++|+++++++.++++++|+++|++ ++..+|+.++|++++++++||||+++  +||+||+|++|+||
T Consensus       506 Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~  583 (659)
T PLN03211        506 YWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYIST  583 (659)
T ss_pred             eEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCH
Confidence            9999999999999999999999999999999999999 99999999999999999999999996  79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCC---ccccCCCccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12625        536 LKHSLEGILLSVYGYDRD---QLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQ  606 (612)
Q Consensus       536 ~~y~~e~l~~n~f~~~~~---~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~  606 (612)
                      ++|+|||++.|||++.+.   .++|++..|....+..++...++++.+.|.|+++|++++++|++++|++|++.
T Consensus       584 ~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~  657 (659)
T PLN03211        584 TFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI  657 (659)
T ss_pred             HHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999975432   35787655543333334555555566899999999999999999999999754

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=2.7e-106  Score=915.68  Aligned_cols=585  Identities=30%  Similarity=0.505  Sum_probs=503.7

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      .+..++++++. +++... ++.+++++++|+|+|+++++||+++|+|||||||||||++|+|+.+|.  ...+|+|.+||
T Consensus        14 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--~~~~G~i~~~g   89 (617)
T TIGR00955        14 VAQDGSWKQLV-SRLRGC-FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--VKGSGSVLLNG   89 (617)
T ss_pred             ccccchhhhhh-hhcccc-cccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcceeEEEECC
Confidence            34567777776 543321 122345688999999999999999999999999999999999998752  23589999999


Q ss_pred             EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC------CCC
Q psy12625         97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK------HLS  170 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LS  170 (612)
                      +++. ...+++.+|||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.+||.+++|+.++      +||
T Consensus        90 ~~~~-~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS  168 (617)
T TIGR00955        90 MPID-AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS  168 (617)
T ss_pred             EECC-HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC
Confidence            9854 355788999999999999999999999999988877666777788899999999999999999987      499


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||||+||+||+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+
T Consensus       169 gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~  248 (617)
T TIGR00955       169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL  248 (617)
T ss_pred             cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence            99999999999999999999999999999999999999999999988999999999998789999999999999999999


Q ss_pred             cCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccccc-cc--CCCcccccCCcchHh---HHHHHHhh--cCCccch
Q psy12625        251 GTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEP-CT--NGKFFNANSSHNTKT---VLKTIEEK--GLSSKEF  322 (612)
Q Consensus       251 G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~  322 (612)
                      |+++++.+||++.|++||++.||+||++|++...+..... .+  +.....+..+....+   .......+  +...+  
T Consensus       249 G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--  326 (617)
T TIGR00955       249 GSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKD--  326 (617)
T ss_pred             CCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccc--
Confidence            9999999999999999999999999999998321110000 00  000001111100000   00000000  00000  


Q ss_pred             hcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy12625        323 YSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMF  402 (612)
Q Consensus       323 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~  402 (612)
                       ........+..+|++|++.|++|++++.+|||.++.+|+++.+++|+++|++||++++++.+++++.|++|+++++++|
T Consensus       327 -~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f  405 (617)
T TIGR00955       327 -SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTF  405 (617)
T ss_pred             -cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             0011223467899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHH
Q psy12625        403 TALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLY  482 (612)
Q Consensus       403 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~  482 (612)
                      .++++.+..|+.||++|.||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+|+.|+++++++.++
T Consensus       406 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~  485 (617)
T TIGR00955       406 QNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANV  485 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHH
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCC--
Q psy12625        483 SQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE--  559 (612)
Q Consensus       483 ~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~--  559 (612)
                      ++++|++++++ ++..+|..++|++++++++|+||+++.++||+||+|++|+||++|++||++.|||++. ...+|++  
T Consensus       486 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~-~~~~c~~~~  564 (617)
T TIGR00955       486 ATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDV-DNIECTSAN  564 (617)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCC-ccccccCcC
Confidence            99999999999 8999999999999999999999999999999999999999999999999999999742 2346853  


Q ss_pred             --CccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy12625        560 --EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK  611 (612)
Q Consensus       560 --~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~  611 (612)
                        ..|+. +|+++|+.||++.++.|.|+++|++++++|++++|++|+++.|++|
T Consensus       565 ~~~~c~~-~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~  617 (617)
T TIGR00955       565 TTGPCPS-SGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR  617 (617)
T ss_pred             cCCCCCc-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence              34864 6899999999999999999999999999999999999999988876

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=5.6e-101  Score=929.72  Aligned_cols=584  Identities=23%  Similarity=0.361  Sum_probs=493.4

Q ss_pred             CceeEEEEeEEEEEEeecc---ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         17 KHFNLLFQDISYSALYYDT---HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~---~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      .+..++|+||+|.++.+..   ...+.+++++|+|||++++|||+++|+||||||||||||+|+|+.++   ...+|+|.
T Consensus       864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~---g~~~G~I~  940 (1470)
T PLN03140        864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIR  940 (1470)
T ss_pred             CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC---CcccceEE
Confidence            3558999999999964321   11122456799999999999999999999999999999999999653   24689999


Q ss_pred             ECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----CC
Q psy12625         94 INETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT-----KH  168 (612)
Q Consensus        94 ~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----~~  168 (612)
                      +||++.. ...+++.+|||+|+|.+++.+||+||+.+++.++.+...++++++++++++++.+||.+++|+++     ++
T Consensus       941 inG~~~~-~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~ 1019 (1470)
T PLN03140        941 ISGFPKK-QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTG 1019 (1470)
T ss_pred             ECCccCC-hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCC
Confidence            9998843 24467789999999999999999999999988776655566667788999999999999999987     47


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~i  247 (612)
                      |||||||||+||++|+.+|++|||||||||||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |++
T Consensus      1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140       1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence            9999999999999999999999999999999999999999999999999999999999998778899999999996 899


Q ss_pred             EEecCc----cChhhHHhhc-CC-CCCCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCC
Q psy12625        248 TYQGTV----PGLVPYLSDF-GY-QCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLS  318 (612)
Q Consensus       248 v~~G~~----~~~~~~f~~~-g~-~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  318 (612)
                      +|+|++    +++.+||++. |. +||++.|||||++|++....+.  .........|+.+...+   +.+.....+...
T Consensus      1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1177 (1470)
T PLN03140       1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--KLGIDFAEHYKSSSLYQRNKALVKELSTPPPG 1177 (1470)
T ss_pred             EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--cccchHHHHHhccHHHHHHHHHHHHhccCCCC
Confidence            999996    5789999997 66 4999999999999997321110  00000111233331111   111111110000


Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHH
Q psy12625        319 SKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDA---ARVHNNLSLLFF  395 (612)
Q Consensus       319 ~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~---~~~~~~~g~lff  395 (612)
                      ..    .......+++|+|+|++.|++|+++++||||.++.+|+++++++|+++|++||+++++.   .+++++.|++|+
T Consensus      1178 ~~----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~ 1253 (1470)
T PLN03140       1178 AS----DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253 (1470)
T ss_pred             cc----ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHH
Confidence            00    11123567899999999999999999999999999999999999999999999999865   567788999999


Q ss_pred             HHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHH
Q psy12625        396 STMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLI  475 (612)
Q Consensus       396 ~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~  475 (612)
                      +++++.+..+.++++.|+.||+||+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+|++|+++
T Consensus      1254 ~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~ 1333 (1470)
T PLN03140       1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFI 1333 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Confidence            99999998888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCc
Q psy12625        476 CVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQ  554 (612)
Q Consensus       476 ~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~  554 (612)
                      ++++.++++++|++++++ |+.++|..++|++++++++|+||++|.++||+||+|++|+||++|+++|++.|||++...+
T Consensus      1334 ~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~ 1413 (1470)
T PLN03140       1334 SFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDT 1413 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCc
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999742212


Q ss_pred             cccCCCccccCChhHH-HHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy12625        555 LKCYEEYCHFKSPAKF-LDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQINRNK  611 (612)
Q Consensus       555 ~~C~~~~C~~~~g~~~-L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~~~~  611 (612)
                      .+|+.... ..+++++ ++.||++++++|++++++++|+++|++++++++++....+|
T Consensus      1414 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1414 IKVPGGAP-DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             ccCCCCCC-CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            23321101 1356666 67899999999999999999999999999999998776665

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=4.6e-101  Score=933.55  Aligned_cols=575  Identities=23%  Similarity=0.380  Sum_probs=492.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||++++..      +.+++.+|+|||+++++||++||+||||||||||||+|+|+.++  +.+.+|+|.+||++
T Consensus       758 ~~l~~~nl~~~~~~------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~--g~~~~G~I~i~G~~  829 (1394)
T TIGR00956       758 DIFHWRNLTYEVKI------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--GVITGGDRLVNGRP  829 (1394)
T ss_pred             ceEEEEeeEEEecC------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC--CCcceeEEEECCEE
Confidence            46899999999832      23457899999999999999999999999999999999999873  12468999999998


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC----CCChhhh
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK----HLSGGQK  174 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGer  174 (612)
                      +.  ..+++.+|||+|+|.+++.+||+||+.+++.++.+...++++++++++++++.+||.+++|+.++    +||||||
T Consensus       830 ~~--~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqr  907 (1394)
T TIGR00956       830 LD--SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQR  907 (1394)
T ss_pred             CC--hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHh
Confidence            63  34678899999999999999999999999888766556666777889999999999999999998    7999999


Q ss_pred             hHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC-eEEEecC
Q psy12625        175 KRLSIALELLSNPS-IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG-YCTYQGT  252 (612)
Q Consensus       175 qRv~ia~aL~~~p~-illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~  252 (612)
                      |||+||+||+.+|+ ||+|||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|+
T Consensus       908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~  987 (1394)
T TIGR00956       908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD  987 (1394)
T ss_pred             hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence            99999999999997 999999999999999999999999999889999999999987678899999999997 9999999


Q ss_pred             c----cChhhHHhhcCC-CCCCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCCccchhc
Q psy12625        253 V----PGLVPYLSDFGY-QCPSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLSSKEFYS  324 (612)
Q Consensus       253 ~----~~~~~~f~~~g~-~~p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  324 (612)
                      +    +++.+||++.|+ +||++.|||||++|+++.....  .........|+.+...+   +.+........... ...
T Consensus       988 ~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~ 1064 (1394)
T TIGR00956       988 LGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAE-DDN 1064 (1394)
T ss_pred             cccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--chhccHHHHHhcCHHHHHHHHHHHHhhcccccCc-ccc
Confidence            7    467899999996 9999999999999998431110  00001111233221111   11111111000000 000


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy12625        325 VLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTA  404 (612)
Q Consensus       325 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~  404 (612)
                      .......+++|+++|+++|++|++++.||||.++..|+++++++|+++|++||++++++.++++|.|++|+.+++..+. 
T Consensus      1065 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~- 1143 (1394)
T TIGR00956      1065 DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL- 1143 (1394)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence            0112245789999999999999999999999999999999999999999999999999999999999999988877665 


Q ss_pred             HHHhhhcccchhhHH-HhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHH-------HHHHHHHH
Q psy12625        405 LSSMIITYPLEFEIT-RREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDR-------FAMFLLIC  476 (612)
Q Consensus       405 ~~~~~~~f~~er~v~-~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~~  476 (612)
                      +..+++.|+.||.++ +||+++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++..       |++|++++
T Consensus      1144 ~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~ 1223 (1394)
T TIGR00956      1144 IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLS 1223 (1394)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHH
Confidence            346677888899886 8999999999999999999999999999999999999999999988765       99999999


Q ss_pred             HHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCcc
Q psy12625        477 VFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQL  555 (612)
Q Consensus       477 ~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~  555 (612)
                      +++.++++++|++++++ |+..+|+.++|++++++++||||+++.++||.||+|++|+||++|++||++.|||++  .++
T Consensus      1224 ~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~--~~~ 1301 (1394)
T TIGR00956      1224 TMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLAD--VPV 1301 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCC--Cee
Confidence            99999999999999999 999999999999999999999999999999999999999999999999999999963  355


Q ss_pred             ccCC--------------------------------------CccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHH
Q psy12625        556 KCYE--------------------------------------EYCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKI  597 (612)
Q Consensus       556 ~C~~--------------------------------------~~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~  597 (612)
                      +|.+                                      .+|++.+|+++|+.+|++.++.|+|++++++|++++ +
T Consensus      1302 ~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~ 1380 (1394)
T TIGR00956      1302 TCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-I 1380 (1394)
T ss_pred             ecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-H
Confidence            5532                                      368899999999999999999999999999998888 8


Q ss_pred             HHHHHHHHhhhcc
Q psy12625        598 ASYLVLYFQINRN  610 (612)
Q Consensus       598 ~~~~~L~~~~~~~  610 (612)
                      +++++|+|+.|.+
T Consensus      1381 ~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956      1381 IATVFFYWLARVP 1393 (1394)
T ss_pred             HHHHhhheEEEcC
Confidence            8999998886544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.9e-101  Score=931.52  Aligned_cols=589  Identities=20%  Similarity=0.313  Sum_probs=493.3

Q ss_pred             CCCceeEEEEeEEEEEEeecc-----------------c-----cccccccccccceEEEEeCCeEEEEECCCCCcHHHH
Q psy12625         15 PRKHFNLLFQDISYSALYYDT-----------------H-----SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKL   72 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~-----------------~-----~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTL   72 (612)
                      +++.+.+.|+||++.......                 .     ..+..++++|+|+|+++++||+++|+||||||||||
T Consensus        24 ~~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTL  103 (1394)
T TIGR00956        24 KPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTL  103 (1394)
T ss_pred             CCCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence            445788999999998743210                 0     112234679999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC----CCCHHHHHH
Q psy12625         73 LDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN----QYSRKAKES  147 (612)
Q Consensus        73 L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~----~~~~~~~~~  147 (612)
                      ||+|+|+.++. ..+.+|+|.+||+++.+. ..+++.++||+|+|.+++.+||+||+.|++.++.+.    ..++++..+
T Consensus       104 Lk~LaG~~~~~-~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~  182 (1394)
T TIGR00956       104 LKTIASNTDGF-HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAK  182 (1394)
T ss_pred             HHHHhCCCCCC-CCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Confidence            99999997421 124799999999986432 335667999999999999999999999998876542    233444333


Q ss_pred             H-HHHHHHHcCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q psy12625        148 K-VDSIADSLSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTM  220 (612)
Q Consensus       148 ~-v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~t  220 (612)
                      + ++++++.+||++++|+++     ++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|
T Consensus       183 ~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~t  262 (1394)
T TIGR00956       183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT  262 (1394)
T ss_pred             HHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCE
Confidence            4 577899999999998876     46999999999999999999999999999999999999999999999997 5999


Q ss_pred             EEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCchhHHHHhcccccccc-ccccCC-----
Q psy12625        221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMF-EPCTNG-----  294 (612)
Q Consensus       221 vi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~ad~~~~~~~~~~~~~-~~~~~~-----  294 (612)
                      ||+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++|++.+.++.. ...++.     
T Consensus       263 vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~  342 (1394)
T TIGR00956       263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTP  342 (1394)
T ss_pred             EEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCH
Confidence            99999999878999999999999999999999999999999999999999999999999984322111 111110     


Q ss_pred             -C-cccccCCcchH---hHHHHHHhh---cCC--------ccchhcccCCCCCCCCCHHHHHHHHHHHHHHHhhcChhHH
Q psy12625        295 -K-FFNANSSHNTK---TVLKTIEEK---GLS--------SKEFYSVLSTEIPYPADCLSQFCILLKRTLIKCFRDRFLT  358 (612)
Q Consensus       295 -~-~~~~~~~~~~~---~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~  358 (612)
                       + ...|+.+...+   +.+.....+   ...        ..+.........++..|+|+|+++|++|++++.+|||.++
T Consensus       343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~  422 (1394)
T TIGR00956       343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT  422 (1394)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence             0 01122221000   011000000   000        0000001122346789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcchHHHHHHHH
Q psy12625        359 KVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSLKAYYLATM  438 (612)
Q Consensus       359 ~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~  438 (612)
                      .+|+++++++|+++|++||++++++.++++|.|++||++++.+|+++.++. .+..||+||+||+.+++|++++|++|++
T Consensus       423 ~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ay~la~~  501 (1394)
T TIGR00956       423 LFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPSADAIASI  501 (1394)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986654 4556999999999999999999999999


Q ss_pred             HHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheee
Q psy12625        439 VADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYF  517 (612)
Q Consensus       439 ~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~  517 (612)
                      ++|+|+.++.+++|++|+|||+||++++++|++|++++++++++++++++++|++ ++..+|+.+++++++++++|+||+
T Consensus       502 l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~  581 (1394)
T TIGR00956       502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA  581 (1394)
T ss_pred             HHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccc
Confidence            9999999999999999999999999999999999999999999999999999999 899999999999999999999999


Q ss_pred             cCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccC---------------CCccc---------cCChhHHHH-
Q psy12625        518 VLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY---------------EEYCH---------FKSPAKFLD-  572 (612)
Q Consensus       518 i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~---------------~~~C~---------~~~g~~~L~-  572 (612)
                      +|.++||+||+|++|+||++|+|||++.|||+.  .+++|+               ...|.         +.+|+++|+ 
T Consensus       582 i~~~~mp~~~~W~~yisp~~yafeal~~nef~~--~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~  659 (1394)
T TIGR00956       582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG--RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL  659 (1394)
T ss_pred             cChhhccHHHHHHHHcCHHHHHHHHHHHhhhcC--CcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh
Confidence            999999999999999999999999999999963  467884               12473         458999998 


Q ss_pred             HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625        573 ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI  607 (612)
Q Consensus       573 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~  607 (612)
                      .+|++.+++|+|++||++|+++|++++++++.+..
T Consensus       660 ~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~  694 (1394)
T TIGR00956       660 SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK  694 (1394)
T ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            58999999999999999999999999999998865

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=5.6e-98  Score=903.60  Aligned_cols=585  Identities=22%  Similarity=0.310  Sum_probs=480.9

Q ss_pred             CCCceeEEEEeEEEEEEeecc------------------c---c---ccccccccccceEEEEeCCeEEEEECCCCCcHH
Q psy12625         15 PRKHFNLLFQDISYSALYYDT------------------H---S---YSIKSKDILKDISGVFVSKELSVILGPSGSGKT   70 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~------------------~---~---~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKS   70 (612)
                      +.+.+.+.|+||++.......                  .   +   .++.++++|+|+|+.++|||+++|+||||||||
T Consensus       126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS  205 (1470)
T PLN03140        126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT  205 (1470)
T ss_pred             CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence            456778999999998751110                  0   0   122356799999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-------CCCHH
Q psy12625         71 KLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-------QYSRK  143 (612)
Q Consensus        71 TLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-------~~~~~  143 (612)
                      ||||+|+|+.+|.  ...+|+|.+||+++.+. ..++.++||+|+|.+++.+||+||+.|+++++.+.       ..+++
T Consensus       206 TLLk~LaG~l~~~--~~~~G~I~~nG~~~~~~-~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~  282 (1470)
T PLN03140        206 TLLLALAGKLDPS--LKVSGEITYNGYRLNEF-VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARR  282 (1470)
T ss_pred             HHHHHHhCCCCCC--CcceeEEEECCEechhh-cccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHH
Confidence            9999999998763  23589999999986432 23678999999999999999999999998765321       11111


Q ss_pred             HH------------------------HHHHHHHHHHcCCccccCccc-----CCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625        144 AK------------------------ESKVDSIADSLSISTCKNTLT-----KHLSGGQKKRLSIALELLSNPSIIFLDE  194 (612)
Q Consensus       144 ~~------------------------~~~v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~p~illlDE  194 (612)
                      ++                        +..++++++.+||++++|+.+     ++|||||||||+||++|+.+|++++|||
T Consensus       283 ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDE  362 (1470)
T PLN03140        283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDE  362 (1470)
T ss_pred             HHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeC
Confidence            11                        123578999999999887654     5799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCCCc
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNP  273 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~~~  273 (612)
                      ||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|+++|+|+++++.+||+++|++||++.||
T Consensus       363 PTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~  442 (1470)
T PLN03140        363 ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGT  442 (1470)
T ss_pred             CCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCCh
Confidence            9999999999999999999987 689999999999888999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhccccccccccccCC-C----------cccccCCcchHhHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHHH
Q psy12625        274 ADYVIEVSLEADRMFEPCTNG-K----------FFNANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCI  342 (612)
Q Consensus       274 ad~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~  342 (612)
                      |||++|++.+.++.. .+.+. .          ...|+++... ..+.+..+...............++|..+++.|++.
T Consensus       443 ADFl~~v~s~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~  520 (1470)
T PLN03140        443 ADFLQEVTSKKDQEQ-YWADRNKPYRYISVSEFAERFKSFHVG-MQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA  520 (1470)
T ss_pred             HHHHHHhcCchhhhh-hhhccCCccccCCHHHHHHHHHhcHHH-HHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence            999999984322100 00000 0          0011111000 011111000000000000111234588999999999


Q ss_pred             HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHH
Q psy12625        343 LLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDA---ARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEIT  419 (612)
Q Consensus       343 l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~---~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~  419 (612)
                      |++|++++.+||+..+..|+++.+++|+++|++||+++.++   .+.+.+.|++||++++.+|+++. .+..++.||+||
T Consensus       521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~-~l~~~~~~r~vf  599 (1470)
T PLN03140        521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFA-ELALMIQRLPVF  599 (1470)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchh
Confidence            99999999999999999999999999999999999997542   34667889999999999988864 467777899999


Q ss_pred             HhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhH
Q psy12625        420 RREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKN  498 (612)
Q Consensus       420 ~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~  498 (612)
                      +|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|++++++++++++++++++|++ ++..+
T Consensus       600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~  679 (1470)
T PLN03140        600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII  679 (1470)
T ss_pred             HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCc-cccCCCccccCChhHHHHHcCCC
Q psy12625        499 GVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQ-LKCYEEYCHFKSPAKFLDALDMK  577 (612)
Q Consensus       499 a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~-~~C~~~~C~~~~g~~~L~~~~~~  577 (612)
                      |+.+++++++++++|+||+++.++||+||+|++|+||++|||||+++|||...... ..|...  ....|+++|+.+|+.
T Consensus       680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~--~~~~G~~~L~~~g~~  757 (1470)
T PLN03140        680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN--STRLGTAVLNIFDVF  757 (1470)
T ss_pred             HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC--CcccHHHHHHhcCcC
Confidence            99999999999999999999999999999999999999999999999999543221 112111  246899999999998


Q ss_pred             CC--CchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625        578 NG--DYSYDLFFLIVSYILVKIASYLVLYFQI  607 (612)
Q Consensus       578 ~~--~~~~~~~il~~~~~~~~~~~~~~L~~~~  607 (612)
                      .+  ++|+|+++|++|+++|+++++++|++..
T Consensus       758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            65  5699999999999999999999998765

>KOG0065|consensus

Probab=100.00  E-value=1.5e-96  Score=840.89  Aligned_cols=558  Identities=25%  Similarity=0.413  Sum_probs=469.7

Q ss_pred             cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625         39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL  118 (612)
Q Consensus        39 ~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l  118 (612)
                      +.+++++|+|||+.++||.++||||+||||||||||+|||+...   +..+|+|++||.+. +.+.++|.+|||.|+|.|
T Consensus       800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~---G~I~Gdi~i~G~p~-~q~tF~R~~GYvqQ~DiH  875 (1391)
T KOG0065|consen  800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG---GYIEGDILISGFPK-DQETFARVSGYVEQQDIH  875 (1391)
T ss_pred             cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc---ceEEeEEEECCeeC-chhhhccccceeeccccc
Confidence            44678999999999999999999999999999999999999762   45899999999994 447899999999999999


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC----CChhhhhHHHHHHHHhhCC-CEEEEe
Q psy12625        119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNP-SIIFLD  193 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~----LSgGerqRv~ia~aL~~~p-~illlD  193 (612)
                      .+.+||+|.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||.    ||.+||||++||.+|+.|| .||+||
T Consensus       876 ~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD  955 (1391)
T KOG0065|consen  876 SPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD  955 (1391)
T ss_pred             CcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence            99999999999999999999999999999999999999999999999886    9999999999999999999 999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEEEecCccC----hhhHHhhcC-CCC
Q psy12625        194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQGTVPG----LVPYLSDFG-YQC  267 (612)
Q Consensus       194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~~----~~~~f~~~g-~~~  267 (612)
                      |||||||+.++..|++.+|+++++|+||+||+|||+.++++.||++++|++ |++||.|+..+    +++||++.| .+|
T Consensus       956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~ 1035 (1391)
T KOG0065|consen  956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKC 1035 (1391)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccC
Confidence            999999999999999999999999999999999999999999999999986 79999999876    456999886 899


Q ss_pred             CCCCCchhHHHHhccccccccccccCCCcccccCCcchH---hHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHHHHH
Q psy12625        268 PSNYNPADYVIEVSLEADRMFEPCTNGKFFNANSSHNTK---TVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFCILL  344 (612)
Q Consensus       268 p~~~~~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~  344 (612)
                      |+..|||||++|+++...+.  .....-.+.|+++...+   +.+++...+ .+.  .......+.+|+.|+|.|++.++
T Consensus      1036 ~~~~NPA~~mLevi~~~~~~--~~~~D~a~~w~~S~e~k~~~e~v~~l~~~-~~~--~~~~~~~~~~fa~s~~~Q~k~~l 1110 (1391)
T KOG0065|consen 1036 ISDENPAEWMLEVIGAGAEA--SLSVDFAEIWKNSEEYKRNKELVKELSQP-PPG--FSTDLEFKTRFAQSLWYQFKLCL 1110 (1391)
T ss_pred             CCCCChHHHHHhhccccccc--ccCccHHHHHhccHHHHHHHHHHHHHhcC-Ccc--CCcccccccccchhHHHHHHHHH
Confidence            99999999999998542221  01111112355542221   122222221 111  00123344668999999999999


Q ss_pred             HHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhcc
Q psy12625        345 KRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHF  424 (612)
Q Consensus       345 ~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~  424 (612)
                      +|++..+||+|.++.+|++..++.|+++|+.||++|++.++.++..|++|+.+++..-+........+..||.+++||++
T Consensus      1111 ~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~ 1190 (1391)
T KOG0065|consen 1111 WRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERA 1190 (1391)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecc
Confidence            99999999999999999999999999999999999999999999999999998887655444455566779999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHH
Q psy12625        425 NRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFG  503 (612)
Q Consensus       425 ~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~  503 (612)
                      +|+||+.+|++|++++|+|+.++++++|.+|+|+|+|+.+++.+|++|++.+++..++..++|+++.++ ||.++|..+.
T Consensus      1191 s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~ 1270 (1391)
T KOG0065|consen 1191 SNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIA 1270 (1391)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998888 9999999999


Q ss_pred             HHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCC-------CccccCChhHHHHHcC-
Q psy12625        504 PLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYE-------EYCHFKSPAKFLDALD-  575 (612)
Q Consensus       504 ~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~-------~~C~~~~g~~~L~~~~-  575 (612)
                      +.++..+.+||||++|++.||.||+||||+||++|..++++..+++ | .+..|..       +.|..+-|+.+-..+| 
T Consensus      1271 s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~-d-~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~ 1348 (1391)
T KOG0065|consen 1271 SLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG-D-VEVTCEDSEMNYFDPPSGQTCGEFMEDFFGE 1348 (1391)
T ss_pred             HHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC-C-CceeeecCCccccCCCCCcCHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999997 3 3667742       1233333333334444 


Q ss_pred             ---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625        576 ---MKNGDYSYDLFFLIVSYILVKIASYLVLYFQI  607 (612)
Q Consensus       576 ---~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~  607 (612)
                         +..+..-....+.+.+.+++.+++.+..++..
T Consensus      1349 ~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1349 GTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred             CcceeccCcceeEEEEeeeehHHHHHHHHHHHHHH
Confidence               33333333333444444555555544444443

>KOG0065|consensus

Probab=100.00  E-value=7.4e-89  Score=777.77  Aligned_cols=558  Identities=24%  Similarity=0.386  Sum_probs=476.0

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ..+|+|+|+.++||+++.++||+||||||||++|+|-.+.  .....|+|.+||.+..+... ++.++|++|+|.|+|.+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~--~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN--FLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc--cccCCCceeECCCccccccc-CceEEecccccccccee
Confidence            4699999999999999999999999999999999998763  23357899999998654333 78899999999999999


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHH-HHHHHHHHcCCccccCcccC-----CCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625        123 TVEESLTVAAHLKLGNQ----YSRKAKES-KVDSIADSLSISTCKNTLTK-----HLSGGQKKRLSIALELLSNPSIIFL  192 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~~~-----~LSgGerqRv~ia~aL~~~p~illl  192 (612)
                      ||+|+|.|+++++.+..    .++.++.. ..+.+++.+||++|+|+++|     ++||||||||++|.+++.+|+++++
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            99999999999987732    22222222 57899999999999999987     4999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhhcCCCCCCCC
Q psy12625        193 DEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNY  271 (612)
Q Consensus       193 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~p~~~  271 (612)
                      ||+|+|||+.++.++++.|+++++ .+.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.
T Consensus       285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~  364 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRK  364 (1391)
T ss_pred             ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCcc
Confidence            999999999999999999999998 6899999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHhccccccccccccCCCcc----------cccCCcchHhHHHHHHhhcCCccchhcccCCCCCCCCCHHHHHH
Q psy12625        272 NPADYVIEVSLEADRMFEPCTNGKFF----------NANSSHNTKTVLKTIEEKGLSSKEFYSVLSTEIPYPADCLSQFC  341 (612)
Q Consensus       272 ~~ad~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~  341 (612)
                      ++|||+.+++.+.++...-.+++...          .|.+++.. ..+....+...+..+-.......++|..+.|.|++
T Consensus       365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~-~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk  443 (1391)
T KOG0065|consen  365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDY-AKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVK  443 (1391)
T ss_pred             CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhh-HHHHHHhcchhhhhhccchhhcCCceeccHHHHHH
Confidence            99999999985311100000110000          01111100 11111111000000000113345678999999999


Q ss_pred             HHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHH
Q psy12625        342 ILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGIG-DDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITR  420 (612)
Q Consensus       342 ~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~-~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~  420 (612)
                      .|++|.++.+.||..++..++++.+++|+++|++|++.+ ++..+...|.|++||++++.+|+++.+....|. .||||+
T Consensus       444 ~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~-~~pv~~  522 (1391)
T KOG0065|consen  444 ACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQ-RLPVFY  522 (1391)
T ss_pred             HHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHh-hcchHH
Confidence            999999999999999999999999999999999999999 777889999999999999999999988766665 999999


Q ss_pred             hhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHH
Q psy12625        421 REHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNG  499 (612)
Q Consensus       421 rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a  499 (612)
                      |||...+|+++||.++..++++|+.++.+++|.+|+||++|+.+++++||.++++++++++|+++++++++++ ++...|
T Consensus       523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A  602 (1391)
T KOG0065|consen  523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA  602 (1391)
T ss_pred             HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccC------------CCcccc---
Q psy12625        500 VIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCY------------EEYCHF---  564 (612)
Q Consensus       500 ~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~------------~~~C~~---  564 (612)
                      +.++++.++.+.+++||+||.++||+||+|++|+||+.||+|++++|||.  +...+|.            ...|..   
T Consensus       603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~--~~~~~c~p~gp~y~n~~~~~~~c~~~~~  680 (1391)
T KOG0065|consen  603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFH--GRRWPCSPSGPAYDNISIENKVCAATGA  680 (1391)
T ss_pred             hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhh--cccCCCCCCCCcccccccccccchhhcc
Confidence            99999999999999999999999999999999999999999999999996  3468897            345743   


Q ss_pred             CCh------hHHHH-HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12625        565 KSP------AKFLD-ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQI  607 (612)
Q Consensus       565 ~~g------~~~L~-~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~  607 (612)
                      ..|      +++++ .|++++.++|+|++|++||.++|.++..+++-+..
T Consensus       681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~  730 (1391)
T KOG0065|consen  681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK  730 (1391)
T ss_pred             ccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence            234      44443 46667899999999999999999999999887654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5e-58  Score=436.07  Aligned_cols=234  Identities=27%  Similarity=0.433  Sum_probs=211.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          ++.++|+|||+++++||+++|+||||||||||||+|.|+.+|     .+|+|.++|+++
T Consensus         2 mi~i~~l~K~f----------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-----~~G~I~i~g~~~   66 (240)
T COG1126           2 MIEIKNLSKSF----------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----DSGSITVDGEDV   66 (240)
T ss_pred             eEEEEeeeEEe----------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-----CCceEEECCEec
Confidence            58999999998          788999999999999999999999999999999999999986     689999999875


Q ss_pred             c---chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 Q---DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~---~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      .   +...+|+++|+|||+.+|||++||.||++++...-  .+.++++.++++.++|+++||.+.+|.++.+||||||||
T Consensus        67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQR  144 (240)
T COG1126          67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQR  144 (240)
T ss_pred             cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHH
Confidence            4   23567899999999999999999999999975432  246788889999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+|||||+.+|+++++|||||+|||....++++.+++|+++|.|+|++||+.. .+.+.+|||++|++|+++..|+|++.
T Consensus       145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence            99999999999999999999999999999999999999999999999999986 67899999999999999999988876


Q ss_pred             hhHHhhcCCCCCCCCCchhHHHH
Q psy12625        257 VPYLSDFGYQCPSNYNPADYVIE  279 (612)
Q Consensus       257 ~~~f~~~g~~~p~~~~~ad~~~~  279 (612)
                              |..|.+....+|+-.
T Consensus       224 --------f~~p~~~R~~~FL~~  238 (240)
T COG1126         224 --------FDNPKSERTRQFLSK  238 (240)
T ss_pred             --------hcCCCCHHHHHHHHh
Confidence                    334655555666543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.8e-53  Score=419.00  Aligned_cols=224  Identities=27%  Similarity=0.377  Sum_probs=204.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||++.|..     .+.+...+|+|||++|++||+++|+|.||||||||+|++.++.+|     ++|+|.++|+++
T Consensus         1 mI~l~~vsK~~~~-----~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-----tsG~v~v~G~di   70 (339)
T COG1135           1 MIELENVSKTFGQ-----TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-----TSGSVFVDGQDL   70 (339)
T ss_pred             CeEEEeeeeeecc-----CCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCceEEEcCEec
Confidence            4789999998842     022345799999999999999999999999999999999999987     689999999887


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ...|++||++||+++++...||+||+.|+..+.   ..++++.++++.++++.+||++.+++++.+||||||
T Consensus        71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQK  147 (339)
T COG1135          71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK  147 (339)
T ss_pred             ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchh
Confidence            432     456899999999999999999999999998775   467889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+.+|+||++|||||+|||.+...|+++|+++.+ .|.||+++||+++ -+.++||||.+|++|++++.|+.
T Consensus       148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v  226 (339)
T COG1135         148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV  226 (339)
T ss_pred             hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence            999999999999999999999999999999999999999986 6999999999986 68999999999999999999998


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      .++.
T Consensus       227 ~~vF  230 (339)
T COG1135         227 SEVF  230 (339)
T ss_pred             HHhh
Confidence            8773

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-52  Score=406.54  Aligned_cols=220  Identities=26%  Similarity=0.442  Sum_probs=205.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|||+.|          +++.+++|+|++|++||+++++|||||||||+||+|.++++|     ++|+|.+||+++
T Consensus         1 MI~~~nvsk~y----------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-----t~G~I~i~g~~i   65 (309)
T COG1125           1 MIEFENVSKRY----------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----TSGEILIDGEDI   65 (309)
T ss_pred             Cceeeeeehhc----------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-----CCceEEECCeec
Confidence            47899999988          678899999999999999999999999999999999999987     689999999998


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc--ccCcccCCCChhhhh
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--CKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerq  175 (612)
                      .+.  .++|+.||||-|+-.+||++||.||+.+-..+.   ++++++.+++++|+++.+||+.  +.++++.+|||||+|
T Consensus        66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ  142 (309)
T COG1125          66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQ  142 (309)
T ss_pred             ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhh
Confidence            763  568999999999999999999999999877665   5778889999999999999974  899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||.+||||+.+|+++++|||+++|||.++.++-+.++++.+ -|+|||++|||.+ +.++++|||.+|++|+++..++|+
T Consensus       143 RVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~  221 (309)
T COG1125         143 RVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPD  221 (309)
T ss_pred             HHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHH
Confidence            99999999999999999999999999999999999999987 5999999999976 689999999999999999999999


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++..
T Consensus       222 ~il~  225 (309)
T COG1125         222 EILA  225 (309)
T ss_pred             HHHh
Confidence            8764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=7e-52  Score=412.90  Aligned_cols=223  Identities=31%  Similarity=0.444  Sum_probs=200.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|+++
T Consensus         2 ~L~~~~ls~~y----------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-----~~G~V~l~g~~i   66 (258)
T COG1120           2 MLEVENLSFGY----------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-----KSGEVLLDGKDI   66 (258)
T ss_pred             eeEEEEEEEEE----------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-----CCCEEEECCCch
Confidence            58999999998          678999999999999999999999999999999999999987     589999999998


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      .+.  +++.+.++||||.+.....+||+|.+.++..-.... ....+++++.+++.|+.+|+.+.+++.+.+||||||||
T Consensus        67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr  146 (258)
T COG1120          67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR  146 (258)
T ss_pred             hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH
Confidence            643  567889999999998888999999999875322111 11234456689999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |.|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||++ ...++||++++|++|+++.+|+|++
T Consensus       147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~e  225 (258)
T COG1120         147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEE  225 (258)
T ss_pred             HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcch
Confidence            9999999999999999999999999999999999999996 6999999999998 5789999999999999999999998


Q ss_pred             hhh
Q psy12625        256 LVP  258 (612)
Q Consensus       256 ~~~  258 (612)
                      +.+
T Consensus       226 vlT  228 (258)
T COG1120         226 VLT  228 (258)
T ss_pred             hcC
Confidence            764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-51  Score=397.58  Aligned_cols=223  Identities=28%  Similarity=0.407  Sum_probs=205.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|++++|++++          +++.|++|||++|++||+++|+||||||||||||+|.|+++|     .+|+|.++|+
T Consensus         6 ~~~I~vr~v~~~f----------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-----~~GeI~i~G~   70 (263)
T COG1127           6 EPLIEVRGVTKSF----------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-----DKGEILIDGE   70 (263)
T ss_pred             cceEEEeeeeeec----------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-----CCCeEEEcCc
Confidence            4579999999987          889999999999999999999999999999999999999997     6899999999


Q ss_pred             eccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCCh
Q psy12625         98 RLQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSG  171 (612)
Q Consensus        98 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSg  171 (612)
                      ++.+.     ...++++|++||+..||..+||+||+.|..+-.  .+.+++..++.+..-|+.+||... ++..+.+|||
T Consensus        71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG  148 (263)
T COG1127          71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSG  148 (263)
T ss_pred             chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc
Confidence            87532     346889999999999999999999999975432  356788888999999999999988 8999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||++||||++.||+|+++||||+||||.++..+.++++++.+ -|.|++++|||.. +++..|||+++|.+|+++..
T Consensus       149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~  227 (263)
T COG1127         149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAE  227 (263)
T ss_pred             hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEe
Confidence            999999999999999999999999999999999999999999987 5999999999986 68999999999999999999


Q ss_pred             cCccChhh
Q psy12625        251 GTVPGLVP  258 (612)
Q Consensus       251 G~~~~~~~  258 (612)
                      |+++++.+
T Consensus       228 Gt~~el~~  235 (263)
T COG1127         228 GTPEELLA  235 (263)
T ss_pred             CCHHHHHh
Confidence            99998753

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.9e-51  Score=398.73  Aligned_cols=211  Identities=32%  Similarity=0.467  Sum_probs=185.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++||++.|..      +....++|+++|++|++||+++|+|||||||||||++|+|+.+|     ++|+|.++|+++.
T Consensus         2 i~~~~v~k~y~~------~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-----t~G~v~i~g~d~~   70 (226)
T COG1136           2 IELKNVSKIYGL------GGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-----TSGEVLINGKDLT   70 (226)
T ss_pred             cEEeeeEEEecc------CCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCceEEECCEEcC
Confidence            678999998843      22236799999999999999999999999999999999999986     6899999998875


Q ss_pred             ch-----Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-cccCCCChhh
Q psy12625        101 DH-----RML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-TLTKHLSGGQ  173 (612)
Q Consensus       101 ~~-----~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~~~~LSgGe  173 (612)
                      ..     ..+ ++.+|||+|+.+|.|++||+||+.++..+..   .+....+++++++++.+||.+..+ +++.+|||||
T Consensus        71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGq  147 (226)
T COG1136          71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQ  147 (226)
T ss_pred             cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHH
Confidence            32     223 5689999999999999999999999876642   222356778899999999997776 8899999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      ||||+|||||+.+|+++++||||.+||+.++..++++++++++ .|+|||++|||+  .+...|||++.|.||++
T Consensus       148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI  220 (226)
T ss_pred             HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence            9999999999999999999999999999999999999999987 499999999997  46889999999999983

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-51  Score=424.21  Aligned_cols=220  Identities=28%  Similarity=0.428  Sum_probs=205.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          ++..+|+|+|+++++||+++|+||||||||||||+|||+.+|     ++|+|.++|+++
T Consensus         3 ~i~l~~v~K~y----------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-----~~G~I~i~g~~v   67 (338)
T COG3839           3 ELELKNVRKSF----------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----TSGEILIDGRDV   67 (338)
T ss_pred             EEEEeeeEEEc----------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence            68999999998          443399999999999999999999999999999999999986     689999999998


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....+|.+++|||+..++|+|||+||+.|+.+.+   +.++++.+++++++.+.++|++..|+++.+|||||||||+|
T Consensus        68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAl  144 (338)
T COG3839          68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL  144 (338)
T ss_pred             CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHH
Confidence            775556789999999999999999999999998775   45778899999999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ||||+++|++++||||+|+||...+..+...|+++.+ -|.|+|.+|||.. ++..++||+.+|++|++...|+|.++..
T Consensus       145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence            9999999999999999999999999999999999987 5899999999975 7899999999999999999999998743

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-51  Score=427.63  Aligned_cols=235  Identities=26%  Similarity=0.437  Sum_probs=214.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||++.|          ++..+++|+|++|++||+++|+||||||||||||+|||+..|     ++|+|.++|++
T Consensus         4 ~~l~i~~v~k~y----------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-----~~G~I~l~G~~   68 (352)
T COG3842           4 PALEIRNVSKSF----------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----SSGEILLDGED   68 (352)
T ss_pred             ceEEEEeeeeec----------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEE
Confidence            468999999988          678899999999999999999999999999999999999987     68999999999


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      +.+....+|.+|+|||+..|||+|||+||+.|+.+++  ....+++.+++++++++.++|++.+++++.+|||||||||+
T Consensus        69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVA  146 (352)
T COG3842          69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVA  146 (352)
T ss_pred             CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHH
Confidence            8776777899999999999999999999999997743  23455678899999999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||||+.+|++|+||||.|+||..-+.++...++++.+ .|.|.|++|||.. +...++|||.+|++|++...|+|+++ 
T Consensus       147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ei-  224 (352)
T COG3842         147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEI-  224 (352)
T ss_pred             HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHH-
Confidence            99999999999999999999999999999999999986 6999999999976 68999999999999999999999987 


Q ss_pred             hHHhhcCCCCCCCCCchhHHHH
Q psy12625        258 PYLSDFGYQCPSNYNPADYVIE  279 (612)
Q Consensus       258 ~~f~~~g~~~p~~~~~ad~~~~  279 (612)
                             |..|.+.-.|||+-+
T Consensus       225 -------Y~~P~~~fVA~FiG~  239 (352)
T COG3842         225 -------YERPATRFVADFIGE  239 (352)
T ss_pred             -------hhCcchHHHHHHhCc
Confidence                   334555556666654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=9.1e-51  Score=420.27  Aligned_cols=223  Identities=31%  Similarity=0.453  Sum_probs=203.6

Q ss_pred             eEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .++++||++.|          + ++.+|+||||++++||++|++||||||||||+|+|+|+.+|     ++|+|.++|.+
T Consensus         4 ~i~~~~l~k~~----------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-----~~G~i~i~G~~   68 (293)
T COG1131           4 VIEVRNLTKKY----------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----TSGEILVLGYD   68 (293)
T ss_pred             eeeecceEEEe----------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEEcCEe
Confidence            57889999988          5 58899999999999999999999999999999999999986     68999999988


Q ss_pred             ccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ... ....++.+||++|++.+++.+||+||+.|.+.++...   ....+++++++++.+||.+..++++++||+|||||+
T Consensus        69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl  145 (293)
T COG1131          69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRL  145 (293)
T ss_pred             CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHH
Confidence            644 3567889999999999999999999999999887432   245677899999999999977899999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +||+||+.+|+++||||||+||||.++.++.+.|++++++| +||+++||++. ++..+||+|++|++|++++.|+++++
T Consensus       146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l  224 (293)
T COG1131         146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL  224 (293)
T ss_pred             HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999977 89999999986 68899999999999999999988887


Q ss_pred             hhHHh
Q psy12625        257 VPYLS  261 (612)
Q Consensus       257 ~~~f~  261 (612)
                      ...+.
T Consensus       225 ~~~~~  229 (293)
T COG1131         225 KEKFG  229 (293)
T ss_pred             HHhhc
Confidence            66543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.5e-51  Score=392.16  Aligned_cols=226  Identities=28%  Similarity=0.385  Sum_probs=200.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|+         +++++|+|||++|++||+++|+||||||||||||+|+|+.+|     .+|+|.+||.+
T Consensus         2 ~~i~~~nl~k~yp---------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-----t~G~i~~~g~~   67 (258)
T COG3638           2 MMIEVKNLSKTYP---------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----TSGEILFNGVQ   67 (258)
T ss_pred             ceEEEeeeeeecC---------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-----CcceEEecccc
Confidence            4799999999984         568899999999999999999999999999999999999886     68999999987


Q ss_pred             ccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625         99 LQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-----NQYSRKAKESKVDSIADSLSISTCKNTLTKH  168 (612)
Q Consensus        99 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~  168 (612)
                      +...     +.+|+++||++|++++.+.+||.+|+..+..-+.+     -.+..++.+.++-+.|+++|+.+.+.++.++
T Consensus        68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~  147 (258)
T COG3638          68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST  147 (258)
T ss_pred             hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence            6432     45789999999999999999999999876422211     1222345567788999999999999999999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||||+|||+|||||+.+|+|++.|||+++|||.+++++|+.|+++++ +|.|||++.||.+ -+.++|||++-|++|++
T Consensus       148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~i  226 (258)
T COG3638         148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRI  226 (258)
T ss_pred             CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcE
Confidence            999999999999999999999999999999999999999999999987 7999999999986 57899999999999999


Q ss_pred             EEecCccChhhH
Q psy12625        248 TYQGTVPGLVPY  259 (612)
Q Consensus       248 v~~G~~~~~~~~  259 (612)
                      +|+|+++++.+.
T Consensus       227 vfDg~~~el~~~  238 (258)
T COG3638         227 VFDGPASELTDE  238 (258)
T ss_pred             EEeCChhhhhHH
Confidence            999999987554

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-50  Score=396.28  Aligned_cols=204  Identities=26%  Similarity=0.433  Sum_probs=187.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++++++.|          +...+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~i~~v~~~f----------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-----~~G~V~~~g~~v   67 (248)
T COG1116           3 LLEIEGVSKSF----------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-----TSGEVLLDGRPV   67 (248)
T ss_pred             eEEEEeeEEEe----------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCccc
Confidence            58899999988          558899999999999999999999999999999999999987     689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      ..   -...++||+|++.++|.+||+||+.++...+.   .++++.+++++++++.+||.+..|+++++|||||||||+|
T Consensus        68 ~~---p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVai  141 (248)
T COG1116          68 TG---PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAI  141 (248)
T ss_pred             CC---CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHH
Confidence            32   35679999999999999999999999877652   4566677899999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ||||+.+|++|+||||+++||..++.++.+.|.++.+ +++||+++|||.. +...++|||++|+++
T Consensus       142 ARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~  207 (248)
T COG1116         142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence            9999999999999999999999999999999999976 6899999999986 678899999999984

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.8e-50  Score=397.14  Aligned_cols=220  Identities=25%  Similarity=0.427  Sum_probs=191.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +.+++|+|||+++++|++++|+||||||||||+|+|.|+++|     .+|+|.++|++
T Consensus         3 ~~i~v~nl~v~y----------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-----~~G~i~~~g~~   67 (254)
T COG1121           3 PMIEVENLTVSY----------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-----SSGEIKIFGKP   67 (254)
T ss_pred             cEEEEeeeEEEE----------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CcceEEEcccc
Confidence            468999999998          333699999999999999999999999999999999999987     68999999988


Q ss_pred             ccchHhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625         99 LQDHRMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ....+ -+.+||||||..   .-|| +||+|.+.++...+.+  ...+ +.+++.++++|+.+|+.+.+|+.+++|||||
T Consensus        68 ~~~~~-~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ  144 (254)
T COG1121          68 VRKRR-KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGELSGGQ  144 (254)
T ss_pred             ccccc-cCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccccCcHH
Confidence            54322 246899999954   2344 8999999887433321  1223 3447889999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      +|||-|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.|+ +++++.|++
T Consensus       145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~  222 (254)
T COG1121         145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPP  222 (254)
T ss_pred             HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccCh
Confidence            99999999999999999999999999999999999999999999999999999987 6899999999996 568899999


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      +++.+
T Consensus       223 ~~~~~  227 (254)
T COG1121         223 EEVLT  227 (254)
T ss_pred             hhccC
Confidence            98765

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-50  Score=400.53  Aligned_cols=223  Identities=26%  Similarity=0.426  Sum_probs=202.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ++|+++|+++.+          +...+++|||++|+.||++|++|||||||||||++|||++.|     ++|.|.+||+.
T Consensus         1 m~i~i~~~~~~~----------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----~~G~I~~~~~~   65 (345)
T COG1118           1 MSIRINNVKKRF----------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----DAGRIRLNGRV   65 (345)
T ss_pred             Cceeehhhhhhc----------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-----CCceEEECCEe
Confidence            367888888877          667899999999999999999999999999999999999987     68999999994


Q ss_pred             c---cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 L---QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~---~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +   .+.....++||||+|+..+|+.|||.||+.|+...+ ....++.+.+.+++++|+.+.|++..++++.+|||||||
T Consensus        66 l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ  144 (345)
T COG1118          66 LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ  144 (345)
T ss_pred             ccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH
Confidence            3   332334578999999999999999999999998776 233456778899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++
T Consensus       145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~  223 (345)
T COG1118         145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPD  223 (345)
T ss_pred             HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHH
Confidence            999999999999999999999999999999999999999874 999999999976 789999999999999999999999


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++.+
T Consensus       224 ev~~  227 (345)
T COG1118         224 EVYD  227 (345)
T ss_pred             HHhc
Confidence            8743

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=8.8e-50  Score=371.54  Aligned_cols=216  Identities=25%  Similarity=0.395  Sum_probs=197.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+|+||++.|..        + +++|+|||+++++||++-|+||||||||||||+|.+..+|     ++|+|.+||+++
T Consensus         1 mI~f~~V~k~Y~~--------g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-----t~G~i~~~~~dl   66 (223)
T COG2884           1 MIRFENVSKAYPG--------G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----TRGKILVNGHDL   66 (223)
T ss_pred             CeeehhhhhhcCC--------C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-----CCceEEECCeec
Confidence            4789999999842        4 7799999999999999999999999999999999999886     689999999997


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ..+|++||+|+||..+.+..||+||+.|+.+..   ..++++.++++.++|+.+||.+.++..+.+||||||
T Consensus        67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQ  143 (223)
T COG2884          67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQ  143 (223)
T ss_pred             ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHH
Confidence            542     457899999999999999999999999988765   456778899999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|+||+++|||.. -+.++-.|++.|++|+++.....
T Consensus       144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEecccc
Confidence            9999999999999999999999999999999999999999999999999999964 56777789999999999876543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-49  Score=376.50  Aligned_cols=237  Identities=22%  Similarity=0.322  Sum_probs=207.7

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++||++.|          +++++|+|||+.|++++++|+|||||||||||||++..+.....+...+|+|.++|+
T Consensus         5 ~~~~~~~~l~~yY----------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~   74 (253)
T COG1117           5 IPAIEVRDLNLYY----------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK   74 (253)
T ss_pred             cceeEecceeEEE----------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCe
Confidence            3468899999988          789999999999999999999999999999999999998765545568999999999


Q ss_pred             eccch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625         98 RLQDH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L  169 (612)
                      ++.+.    ..+|+++|+|+|.|+.|| +|++||+.++.++..   ..+++.++.|++.|+...|.    +..++...+|
T Consensus        75 ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~L  150 (253)
T COG1117          75 NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKSALGL  150 (253)
T ss_pred             eccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCC
Confidence            98543    468999999999999999 999999999987752   22366778899999988874    3445667789


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+.+|+||+||||||+|||.+..+|.+++.+|+ +.-|||++||.+. ...+..|+..++..|++++
T Consensus       151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE  228 (253)
T COG1117         151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYLGELVE  228 (253)
T ss_pred             ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcccEEEE
Confidence            9999999999999999999999999999999999999999999998 4689999999986 6789999999999999999


Q ss_pred             ecCccChhhHHhhcCCCCCCCCCchhHHH
Q psy12625        250 QGTVPGLVPYLSDFGYQCPSNYNPADYVI  278 (612)
Q Consensus       250 ~G~~~~~~~~f~~~g~~~p~~~~~ad~~~  278 (612)
                      +|+.+++        |..|.+..+.||+.
T Consensus       229 ~g~T~~i--------F~~P~~~~TedYis  249 (253)
T COG1117         229 FGPTDKI--------FTNPKHKRTEDYIS  249 (253)
T ss_pred             EcCHHhh--------hcCccHHHHHHHhc
Confidence            9999877        45677777777763

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-50  Score=375.73  Aligned_cols=221  Identities=26%  Similarity=0.406  Sum_probs=203.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|++.+++++|+.         ..++++||||+++.||+++|+|||||||||+||+|++++.|     ++|.|+++|.+.
T Consensus         1 Ml~v~~l~K~y~~---------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-----~~G~v~idg~d~   66 (245)
T COG4555           1 MLEVTDLTKSYGS---------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----DSGKVTIDGVDT   66 (245)
T ss_pred             CeeeeehhhhccC---------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-----CCceEEEeeccc
Confidence            4788899988821         23499999999999999999999999999999999999997     689999999886


Q ss_pred             c-chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 Q-DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~-~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      . ++...|++||.++.+..++..||++|||.|.+++.   ++++.+.+++++++.+.++|.++.|++++++|-|+||||+
T Consensus        67 ~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~  143 (245)
T COG4555          67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA  143 (245)
T ss_pred             ccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH
Confidence            4 34667999999998889999999999999998875   4667788899999999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |||||+.+|++++|||||||||..+...+.+.+++++++|++||+++|... ++..+||+|++|++|++++.|+++++..
T Consensus       144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999976 7889999999999999999999987654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=3.4e-48  Score=404.36  Aligned_cols=221  Identities=28%  Similarity=0.373  Sum_probs=199.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||++.|          +++.+|+|||+++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.+
T Consensus         6 ~~i~i~~l~k~~----------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-----~~G~v~i~G~~   70 (306)
T PRK13537          6 APIDFRNVEKRY----------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-----DAGSISLCGEP   70 (306)
T ss_pred             ceEEEEeEEEEE----------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEe
Confidence            369999999988          457799999999999999999999999999999999999986     68999999998


Q ss_pred             ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      +... ...++.+||++|++.+++.+||+||+.+.+.++   ..+..+.+++++++++.+||.+..++++++||||||||+
T Consensus        71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  147 (306)
T PRK13537         71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL  147 (306)
T ss_pred             cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence            7432 346788999999999999999999999866543   233444566789999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus       148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999999999999888999999999986 688999999999999999999988765


Q ss_pred             h
Q psy12625        258 P  258 (612)
Q Consensus       258 ~  258 (612)
                      .
T Consensus       227 ~  227 (306)
T PRK13537        227 E  227 (306)
T ss_pred             h
Confidence            4

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-48  Score=410.91  Aligned_cols=219  Identities=27%  Similarity=0.403  Sum_probs=199.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~~   68 (353)
T TIGR03265         4 YLSIDNIRKRF----------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----TAGTIYQGGRDI   68 (353)
T ss_pred             EEEEEEEEEEe----------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CceEEEECCEEC
Confidence            58999999988          456799999999999999999999999999999999999886     689999999987


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||+|++.+||.+||+||+.|+...+   ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus        69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaL  145 (353)
T TIGR03265        69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVAL  145 (353)
T ss_pred             CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHH
Confidence            554445678999999999999999999999986543   34456677889999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++++||||||+||+.++.++.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus       146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999874 999999999986 688999999999999999999998764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-48  Score=411.07  Aligned_cols=220  Identities=23%  Similarity=0.369  Sum_probs=198.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|.         +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~i~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-----~~G~I~~~g~~i   68 (356)
T PRK11650          3 GLKLQAVRKSYD---------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-----TSGEIWIGGRVV   68 (356)
T ss_pred             EEEEEeEEEEeC---------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----CceEEEECCEEC
Confidence            589999999872         246799999999999999999999999999999999999886     689999999987


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||+|++.+||.+||+||+.|+...+   ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus        69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRval  145 (356)
T PRK11650         69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAM  145 (356)
T ss_pred             CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHH
Confidence            554344578999999999999999999999986542   23455666789999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus       146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~  223 (356)
T PRK11650        146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY  223 (356)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999874 999999999976 689999999999999999999998763

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-48  Score=409.43  Aligned_cols=220  Identities=20%  Similarity=0.415  Sum_probs=200.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|++
T Consensus         5 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~~~g~~   69 (351)
T PRK11432          5 NFVVLKNITKRF----------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----TEGQIFIDGED   69 (351)
T ss_pred             cEEEEEeEEEEE----------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----CceEEEECCEE
Confidence            379999999988          456799999999999999999999999999999999999986     68999999998


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      +.+....++.+|||+|++.+||.+||+||+.|+...+   ..++.+.+++++++++.+||.+..++++.+|||||||||+
T Consensus        70 i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa  146 (351)
T PRK11432         70 VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA  146 (351)
T ss_pred             CCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence            7654445678999999999999999999999986543   2445666788999999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus       147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999999999999999874 899999999986 688999999999999999999998763

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.6e-48  Score=407.40  Aligned_cols=223  Identities=24%  Similarity=0.371  Sum_probs=197.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||++.|..      +.+.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+++
T Consensus         1 mI~~~~lsk~y~~------~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-----~~G~I~i~G~~i   69 (343)
T TIGR02314         1 MIKLSNITKVFHQ------GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TSGSVIVDGQDL   69 (343)
T ss_pred             CEEEEEEEEEECC------CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            3789999999831      11235799999999999999999999999999999999999986     689999999987


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ...++.+||++|++.+++.+||+||+.++....   ..++++.++++.++++.+||.+..|+++.+||||||
T Consensus        70 ~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqk  146 (343)
T TIGR02314        70 TTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQK  146 (343)
T ss_pred             CcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            532     234778999999999999999999999876532   234556677899999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+++|++|+||||||+||+.++..++++|++++++ |.|||++||++. .+.++||++++|++|++++.|++
T Consensus       147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~  225 (343)
T TIGR02314       147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV  225 (343)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            9999999999999999999999999999999999999999874 999999999976 67899999999999999999998


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       226 ~~v~  229 (343)
T TIGR02314       226 SEIF  229 (343)
T ss_pred             HHHH
Confidence            7663

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-48  Score=376.50  Aligned_cols=223  Identities=25%  Similarity=0.366  Sum_probs=195.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|..      +....++|+|||+++.+||.++|+|+||||||||.++|+|+.+|     .+|+|.++|++
T Consensus         2 ~~l~v~nl~~~y~~------~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----~~G~I~~~G~~   70 (252)
T COG1124           2 TLLSVRNLSIVYGG------GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----SSGSILLDGKP   70 (252)
T ss_pred             ceEEEeceEEEecC------CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----CCceEEECCcc
Confidence            46899999999843      11123699999999999999999999999999999999999986     68999999987


Q ss_pred             ccch---HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChh
Q psy12625         99 LQDH---RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGG  172 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgG  172 (612)
                      ....   +.+++.+.+||||+  .+.|..||++.+.-+.+..   +.++  .++++.++++.+||.+ .+++++.+||||
T Consensus        71 ~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGG  145 (252)
T COG1124          71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGG  145 (252)
T ss_pred             cCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChh
Confidence            5432   35678999999997  5889999999998775542   2333  3345999999999975 689999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||++|||||+.+|++||||||||+||+..+.+|+++|.++++ .+.|.|+++||.. .+..+|||+++|++|++++.+
T Consensus       146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~  224 (252)
T COG1124         146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIG  224 (252)
T ss_pred             HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEee
Confidence            99999999999999999999999999999999999999999987 5889999999976 689999999999999999999


Q ss_pred             CccChhh
Q psy12625        252 TVPGLVP  258 (612)
Q Consensus       252 ~~~~~~~  258 (612)
                      +.+++.+
T Consensus       225 ~~~~l~~  231 (252)
T COG1124         225 PTEELLS  231 (252)
T ss_pred             chhhhhc
Confidence            9988765

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=6.3e-48  Score=409.51  Aligned_cols=219  Identities=23%  Similarity=0.397  Sum_probs=198.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce--eEEEECCE
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINET   97 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~--G~I~~~g~   97 (612)
                      .|+++||+++|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+  |+|.++|+
T Consensus         5 ~l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~~~G~i~~~g~   69 (362)
T TIGR03258         5 GIRIDHLRVAY----------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-----AGLTGRIAIADR   69 (362)
T ss_pred             EEEEEEEEEEE----------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCCEEEEECCE
Confidence            58899999988          446799999999999999999999999999999999999986     56  99999999


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ++.+....++.++||+|++.++|.+||+||+.|+...+   ..++.+.+++++++++.+||++..++++++|||||||||
T Consensus        70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv  146 (362)
T TIGR03258        70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI  146 (362)
T ss_pred             ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence            87543345678999999999999999999999986543   244556677899999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      +|||||+.+|++|+|||||+|||+..+.++.+.|++++++  |+|+|++|||+. ++..++|+|++|++|+++..|++++
T Consensus       147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~  225 (362)
T TIGR03258       147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA  225 (362)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999875  899999999976 6889999999999999999999987


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       226 ~~  227 (362)
T TIGR03258       226 LY  227 (362)
T ss_pred             HH
Confidence            64

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.1e-47  Score=386.46  Aligned_cols=218  Identities=28%  Similarity=0.422  Sum_probs=192.4

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~   65 (235)
T cd03261           1 IELRGLTKSF----------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----DSGEVLIDGEDIS   65 (235)
T ss_pred             CeEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence            4689999987          446799999999999999999999999999999999999886     6899999998864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ..+++.++|++|++.+++.+||+||+.+......  ..++++.+++++++++.+||.+..++++++|||||||
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  143 (235)
T cd03261          66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKK  143 (235)
T ss_pred             ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence            32     3456789999999999999999999988643221  2234455677899999999999899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||+|||||+.+|++++|||||+|||+.++..+++.|+++++ .|+|||+++||+. .+.++||++++|++|++++.|+++
T Consensus       144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~  222 (235)
T cd03261         144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE  222 (235)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence            99999999999999999999999999999999999999987 4899999999986 578899999999999999999876


Q ss_pred             Ch
Q psy12625        255 GL  256 (612)
Q Consensus       255 ~~  256 (612)
                      ++
T Consensus       223 ~~  224 (235)
T cd03261         223 EL  224 (235)
T ss_pred             HH
Confidence            54

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.3e-47  Score=408.70  Aligned_cols=220  Identities=23%  Similarity=0.394  Sum_probs=199.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|++
T Consensus        13 ~~L~l~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----~~G~I~~~g~~   77 (375)
T PRK09452         13 PLVELRGISKSF----------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----DSGRIMLDGQD   77 (375)
T ss_pred             ceEEEEEEEEEE----------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEE
Confidence            369999999988          456799999999999999999999999999999999999986     68999999998


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      +.+....++.++||+|++.+||.+||+||+.|+...+   +.++.+.+++++++++.+||++..++++.+|||||||||+
T Consensus        78 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa  154 (375)
T PRK09452         78 ITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA  154 (375)
T ss_pred             CCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence            7544444678999999999999999999999986533   2345556678999999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||||+.+|++|+|||||||||+..+..+.+.|+++++ .|+|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus       155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999987 4999999999976 688999999999999999999988763

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.7e-47  Score=405.56  Aligned_cols=223  Identities=26%  Similarity=0.395  Sum_probs=198.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|++
T Consensus         1 ~~L~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~i~g~~   65 (353)
T PRK10851          1 MSIEIANIKKSF----------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----TSGHIRFHGTD   65 (353)
T ss_pred             CEEEEEEEEEEe----------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence            358899999988          456799999999999999999999999999999999999886     68999999998


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      +.+....++.++||+|++.++|.+||+||+.++...... ...++++.+++++++++.+||.+..++++.+|||||||||
T Consensus        66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv  145 (353)
T PRK10851         66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV  145 (353)
T ss_pred             CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence            754334467899999999999999999999987653211 1234455677899999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|++++.|+++++
T Consensus       146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i  224 (353)
T PRK10851        146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQV  224 (353)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999999999999999999999999875 899999999986 68899999999999999999998876


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       225 ~  225 (353)
T PRK10851        225 W  225 (353)
T ss_pred             H
Confidence            4

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=3.7e-47  Score=400.97  Aligned_cols=222  Identities=27%  Similarity=0.380  Sum_probs=199.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|     .+|+|.++|+
T Consensus        39 ~~~i~i~nl~k~y----------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----~~G~i~i~G~  103 (340)
T PRK13536         39 TVAIDLAGVSKSY----------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----DAGKITVLGV  103 (340)
T ss_pred             ceeEEEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CceEEEECCE
Confidence            3469999999998          556799999999999999999999999999999999999986     6899999999


Q ss_pred             eccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         98 RLQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        98 ~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ++... ...++.+||++|++.+++.+||+||+.+.....   ..+..+.+++++++++.+||.+..++++++||||||||
T Consensus       104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqr  180 (340)
T PRK13536        104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRR  180 (340)
T ss_pred             ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHH
Confidence            86532 346788999999999999999999999765443   12334455678899999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||+.+ ++.++||+|++|++|++++.|+++++
T Consensus       181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l  259 (340)
T PRK13536        181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHAL  259 (340)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999999999888999999999986 68899999999999999999999887


Q ss_pred             hh
Q psy12625        257 VP  258 (612)
Q Consensus       257 ~~  258 (612)
                      ..
T Consensus       260 ~~  261 (340)
T PRK13536        260 ID  261 (340)
T ss_pred             Hh
Confidence            54

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=4.2e-48  Score=357.53  Aligned_cols=216  Identities=27%  Similarity=0.433  Sum_probs=191.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |.+++|.++|.          ..+  =..+++|++||++||+||||||||||||+|+|+..|     .+|+|.+||++..
T Consensus         2 l~L~~V~~~y~----------~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----~~G~i~i~g~d~t   64 (231)
T COG3840           2 LALDDVRFSYG----------HLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----ASGEILINGVDHT   64 (231)
T ss_pred             ccccceEEeeC----------cce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----CCceEEEcCeecC
Confidence            56678888872          222  367889999999999999999999999999999987     6899999999965


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      ......|-+++++|+.++|..+||.+|+.++..-.+  +. ..+.+++++.++.++||..+.++.+++|||||||||++|
T Consensus        65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA  141 (231)
T COG3840          65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA  141 (231)
T ss_pred             cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence            545567889999999999999999999988753222  22 245678899999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |+|+++-+||+||||+|+|||.-+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|+|.++|+.++..
T Consensus       142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            999999999999999999999999999999999987 6899999999997 689999999999999999999887654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.5e-47  Score=377.01  Aligned_cols=212  Identities=30%  Similarity=0.450  Sum_probs=187.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~   65 (213)
T cd03259           1 LELKGLSKTY----------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----DSGEILIDGRDVT   65 (213)
T ss_pred             CeeeeeEEEe----------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEcC
Confidence            4688999987          346799999999999999999999999999999999999886     6899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +....++.++|++|++.+++.+|++||+.+.....   .......+++++++++.+|+.+..++++.+||||||||++||
T Consensus        66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  142 (213)
T cd03259          66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA  142 (213)
T ss_pred             cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence            43334578999999999999999999998865432   123344556788999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+.++||++++|++|++++.|
T Consensus       143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999987 5899999999976 578899999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-47  Score=379.34  Aligned_cols=221  Identities=29%  Similarity=0.395  Sum_probs=198.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|++|.|+.        + +.+|+|+|+++++||.++|+||||||||||+++|+|+++|     .+|+|.++|.++
T Consensus         3 ~i~~~~l~~~y~~--------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----~~G~v~~~g~~~   68 (235)
T COG1122           3 MIEAENLSFRYPG--------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-----TSGEVLVDGLDT   68 (235)
T ss_pred             eEEEEEEEEEcCC--------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-----CCCEEEECCeec
Confidence            5889999999832        3 6899999999999999999999999999999999999997     579999999986


Q ss_pred             cc---hHhhccceEEEccCCCC-CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        100 QD---HRMLRKESCYIMQDNLL-QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~---~~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..   ...+++++|||+|+|.. +-.-||.|.+.|+..-.   ..++++.+++++++++.+|+.+.+++.+.+|||||||
T Consensus        69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq  145 (235)
T COG1122          69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQ  145 (235)
T ss_pred             cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCccee
Confidence            42   35678999999999743 33469999999986432   4566778899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||+||.+|+.+|++|+|||||||||+.++.++++.++++.++ |+|+|++|||.. .+..++|++++|++|+++++|+|.
T Consensus       146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~  224 (235)
T COG1122         146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPA  224 (235)
T ss_pred             eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHH
Confidence            999999999999999999999999999999999999999986 799999999986 688999999999999999999987


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++.+
T Consensus       225 ~i~~  228 (235)
T COG1122         225 EIFN  228 (235)
T ss_pred             HHhh
Confidence            6543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=7.1e-47  Score=376.75  Aligned_cols=216  Identities=25%  Similarity=0.394  Sum_probs=191.4

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|.++.
T Consensus         1 i~~~~~~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~   65 (220)
T cd03265           1 IEVENLVKKY----------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----TSGRATVAGHDVV   65 (220)
T ss_pred             CEEEEEEEEE----------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEecC
Confidence            4689999987          446799999999999999999999999999999999999886     6899999998864


Q ss_pred             c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      . ....++.++|++|++.+++.+||+||+.+.....   ....++.+++++++++.+||.+..++++++||||||||++|
T Consensus        66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~l  142 (220)
T cd03265          66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEI  142 (220)
T ss_pred             cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHH
Confidence            3 2345678999999999999999999998875442   12334455678999999999998999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++..|++++
T Consensus       143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence            99999999999999999999999999999999999875 899999999986 6788999999999999999987764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.7e-47  Score=403.74  Aligned_cols=221  Identities=22%  Similarity=0.367  Sum_probs=199.9

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+
T Consensus        17 ~~~l~l~~v~~~~----------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----~~G~I~i~g~   81 (377)
T PRK11607         17 TPLLEIRNLTKSF----------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----TAGQIMLDGV   81 (377)
T ss_pred             CceEEEEeEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCE
Confidence            3469999999987          446799999999999999999999999999999999999986     6899999999


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ++.+....++.+|||+|++.+||.+||.||+.|+...+   +.++.+.+++++++++.+||.+..++++.+|||||||||
T Consensus        82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV  158 (377)
T PRK11607         82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV  158 (377)
T ss_pred             ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence            87554445788999999999999999999999986543   234556677899999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +|||||+.+|++|+|||||++||...+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++
T Consensus       159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~  237 (377)
T PRK11607        159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEI  237 (377)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence            999999999999999999999999999999999999876 5899999999976 68899999999999999999999876


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       238 ~  238 (377)
T PRK11607        238 Y  238 (377)
T ss_pred             H
Confidence            4

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-47  Score=403.87  Aligned_cols=219  Identities=26%  Similarity=0.410  Sum_probs=196.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~i~~l~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----~~G~I~~~g~~i   67 (369)
T PRK11000          3 SVTLRNVTKAY----------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-----TSGDLFIGEKRM   67 (369)
T ss_pred             EEEEEEEEEEe----------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence            58999999988          456799999999999999999999999999999999999986     689999999987


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.++||+|++.+++.+||+||+.+....+   ..++.+.+++++++++.+||++..++++.+|||||||||+|
T Consensus        68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaL  144 (369)
T PRK11000         68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI  144 (369)
T ss_pred             CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence            543334578999999999999999999999876543   23345556789999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus       145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~  222 (369)
T PRK11000        145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY  222 (369)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999999874 899999999976 688999999999999999999988764

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=9.7e-47  Score=393.47  Aligned_cols=221  Identities=28%  Similarity=0.374  Sum_probs=196.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|++
T Consensus         3 ~~i~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~   67 (303)
T TIGR01288         3 VAIDLVGVSKSY----------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----DRGKITVLGEP   67 (303)
T ss_pred             cEEEEEeEEEEe----------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEE
Confidence            468999999988          456799999999999999999999999999999999999886     68999999998


Q ss_pred             ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      +... ...++.+||++|++.+++.+||+||+.+.....   ..+..+.+++++++++.+||.+..++++++||||||||+
T Consensus        68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv  144 (303)
T TIGR01288        68 VPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL  144 (303)
T ss_pred             CcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH
Confidence            6432 345778999999999999999999998754432   123344456788999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus       145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  223 (303)
T TIGR01288       145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALI  223 (303)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999999999999999999888999999999986 678899999999999999999988764


Q ss_pred             h
Q psy12625        258 P  258 (612)
Q Consensus       258 ~  258 (612)
                      .
T Consensus       224 ~  224 (303)
T TIGR01288       224 D  224 (303)
T ss_pred             h
Confidence            3

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=7.9e-47  Score=381.20  Aligned_cols=221  Identities=27%  Similarity=0.392  Sum_probs=192.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   66 (239)
T cd03296           2 SIEVRNVSKRF----------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----DSGTILFGGEDA   66 (239)
T ss_pred             EEEEEeEEEEE----------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence            58999999988          346799999999999999999999999999999999999886     689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      ......++.++|++|++.+++.+||+||+.+....... ......+.+++++++++.+||.+..++++.+||||||||++
T Consensus        67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~  146 (239)
T cd03296          67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVA  146 (239)
T ss_pred             CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence            43323356799999999999999999999886543210 00122334567889999999999899999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus       147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence            999999999999999999999999999999999999874 899999999986 57889999999999999999987654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-48  Score=364.64  Aligned_cols=223  Identities=25%  Similarity=0.482  Sum_probs=201.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|..+||.++|          ++++++++||+++++||+++++|||||||||.+.++.|+.+|     ++|+|.+||.+
T Consensus         3 ~~L~a~~l~K~y----------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-----d~G~i~ld~~d   67 (243)
T COG1137           3 STLVAENLAKSY----------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----DSGKILLDDED   67 (243)
T ss_pred             cEEEehhhhHhh----------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-----CCceEEECCcc
Confidence            368889998887          678899999999999999999999999999999999999986     68999999999


Q ss_pred             ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +...   ...|..+||+||++..|..+||+||+......+.. ...+.+.+.+++++|+++++.|.++++..+|||||||
T Consensus        68 iT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERR  146 (243)
T COG1137          68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERR  146 (243)
T ss_pred             cccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHH
Confidence            8653   33466899999999999999999999987766532 1223455667889999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |+.|||||+.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-|+.. +...+|||.+++++|++..+|+|++
T Consensus       147 R~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~e  225 (243)
T COG1137         147 RVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEE  225 (243)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHH
Confidence            999999999999999999999999999999999999999999999999999987 6889999999999999999999998


Q ss_pred             hhh
Q psy12625        256 LVP  258 (612)
Q Consensus       256 ~~~  258 (612)
                      +.+
T Consensus       226 i~~  228 (243)
T COG1137         226 IVN  228 (243)
T ss_pred             Hhc
Confidence            754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=9e-47  Score=374.88  Aligned_cols=210  Identities=21%  Similarity=0.392  Sum_probs=184.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|..        +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPG--------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-----TRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecC--------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEehh
Confidence            789999998821        224699999999999999999999999999999999999886     5899999999864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ..+++.++|++|++.+++.+||+||+.+.....   ....++.+++++++++.+|+.+..++.+.+|||||||
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  145 (216)
T TIGR00960        69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQ  145 (216)
T ss_pred             hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence            31     235678999999999999999999998875432   1233445677899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++
T Consensus       146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999999999878999999999986 57789999999999974

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.7e-46  Score=372.07  Aligned_cols=212  Identities=25%  Similarity=0.436  Sum_probs=187.4

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~v~~~g~~~~   65 (213)
T cd03301           1 VELENVTKRF----------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----TSGRIYIGGRDVT   65 (213)
T ss_pred             CEEEeeEEEE----------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence            4689999987          446799999999999999999999999999999999999886     6899999999864


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|++||+.+.....   ....++.+++++++++.+|+++..++++.+||||||||++||
T Consensus        66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la  142 (213)
T cd03301          66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG  142 (213)
T ss_pred             cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence            33233467999999999999999999998865432   223444566788999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++||+. ++.++||++++|++|++++.|
T Consensus       143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999999987 4899999999975 678899999999999998875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=396.21  Aligned_cols=223  Identities=26%  Similarity=0.379  Sum_probs=195.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|..      +.+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         1 mi~i~~l~~~y~~------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----~~G~I~~~g~~i   69 (343)
T PRK11153          1 MIELKNISKVFPQ------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-----TSGRVLVDGQDL   69 (343)
T ss_pred             CEEEEeEEEEeCC------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence            3789999998831      01246799999999999999999999999999999999999986     689999999987


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ...++.++||+|++.+++.+||+||+.+.....   ..++.+.+++++++++.+||.+..++++.+||||||
T Consensus        70 ~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~  146 (343)
T PRK11153         70 TALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQK  146 (343)
T ss_pred             CcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            432     234678999999999999999999999875442   234445567889999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|++++.|++
T Consensus       147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~  225 (343)
T PRK11153        147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV  225 (343)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            9999999999999999999999999999999999999999874 899999999986 67889999999999999999988


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       226 ~~~~  229 (343)
T PRK11153        226 SEVF  229 (343)
T ss_pred             HHHH
Confidence            7653

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.3e-46  Score=376.91  Aligned_cols=220  Identities=25%  Similarity=0.418  Sum_probs=191.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   65 (236)
T cd03219           1 LEVRGLTKRF----------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----TSGSVLFDGEDIT   65 (236)
T ss_pred             CeeeeeEEEE----------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCceEEECCEECC
Confidence            4678999887          345799999999999999999999999999999999999886     5899999999864


Q ss_pred             ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHHHcCCccccCcccCCCC
Q psy12625        101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ-------YSRKAKESKVDSIADSLSISTCKNTLTKHLS  170 (612)
Q Consensus       101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS  170 (612)
                      ..  .. .++.++|++|++.+++.+||+||+.+.........       ....+..++++++++.+|+++..++++++||
T Consensus        66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  145 (236)
T cd03219          66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELS  145 (236)
T ss_pred             CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCC
Confidence            32  22 34679999999999999999999988754321110       0133445678999999999998999999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..
T Consensus       146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~  224 (236)
T cd03219         146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE  224 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence            99999999999999999999999999999999999999999999878899999999986 67889999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |+++++
T Consensus       225 ~~~~~~  230 (236)
T cd03219         225 GTPDEV  230 (236)
T ss_pred             cCHHHh
Confidence            987654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.4e-46  Score=388.89  Aligned_cols=219  Identities=20%  Similarity=0.372  Sum_probs=196.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|++++|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+++
T Consensus         2 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----~~G~i~i~g~~~   66 (301)
T TIGR03522         2 SIRVSSLTKLY----------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-----DSGSVQVCGEDV   66 (301)
T ss_pred             EEEEEEEEEEE----------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEc
Confidence            58899999988          456799999999999999999999999999999999999886     689999999986


Q ss_pred             cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      ... ...++.+||++|++.+++.+||.||+.+.+.+.   ..+.++.+++++++++.+||.+..++++++||||||||++
T Consensus        67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  143 (301)
T TIGR03522        67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG  143 (301)
T ss_pred             ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH
Confidence            432 345778999999999999999999999876553   2334445667899999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|++++...
T Consensus       144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999999965 799999999986 6889999999999999999999887654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.3e-46  Score=371.34  Aligned_cols=216  Identities=25%  Similarity=0.413  Sum_probs=188.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..      +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~v~~~~~~------~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   70 (218)
T cd03266           2 ITADALTKRFRD------VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----DAGFATVDGFDVV   70 (218)
T ss_pred             eEEEEEEEecCC------CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEEECCEEcc
Confidence            788999998721      00112799999999999999999999999999999999999886     6899999999864


Q ss_pred             c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      . ...+++.++|++|++.+++.+||+||+.+.....   ..++.+..++++++++.+|+.+..++.+++||||||||++|
T Consensus        71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  147 (218)
T cd03266          71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAI  147 (218)
T ss_pred             cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHH
Confidence            3 2345678999999999999999999998765432   23344556788999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus       148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence            99999999999999999999999999999999999878999999999986 678899999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=3.1e-46  Score=374.98  Aligned_cols=217  Identities=26%  Similarity=0.467  Sum_probs=191.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~   65 (232)
T cd03218           1 LRAENLSKRY----------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----DSGKILLDGQDIT   65 (232)
T ss_pred             CeEEEEEEEe----------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence            4688999987          446799999999999999999999999999999999999886     6899999999864


Q ss_pred             ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..  .. .++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+|+++..++.+++||||||||+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  142 (232)
T cd03218          66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV  142 (232)
T ss_pred             cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence            32  22 3467999999999999999999998864332   123344456788999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|+++..|++++.
T Consensus       143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            9999999999999999999999999999999999999888999999999986 68899999999999999999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.9e-46  Score=391.09  Aligned_cols=209  Identities=25%  Similarity=0.387  Sum_probs=188.2

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~  119 (612)
                      +++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.++|+++... ...++.+||++|++.++
T Consensus         4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~   78 (302)
T TIGR01188         4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-----TSGTARVAGYDVVREPRKVRRSIGIVPQYASVD   78 (302)
T ss_pred             CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence            456799999999999999999999999999999999999986     689999999986432 34577899999999999


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL  199 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL  199 (612)
                      +.+||+||+.+.+.++   ..+..+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++|+|||||+||
T Consensus        79 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL  155 (302)
T TIGR01188        79 EDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL  155 (302)
T ss_pred             CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            9999999999876543   2334445667899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++..
T Consensus       156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999999999888999999999986 6888999999999999999999887654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=3.5e-46  Score=371.61  Aligned_cols=218  Identities=29%  Similarity=0.433  Sum_probs=190.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..        +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   67 (220)
T cd03263           1 LQIRNLTKTYKK--------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----TSGTAYINGYSIR   67 (220)
T ss_pred             CEEEeeEEEeCC--------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence            468999998721        126799999999999999999999999999999999999886     6899999999864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ..+++.++|++|++.+++.+|++||+.+.....   ..+..+.+++++++++.+||.+..++.+.+||||||||++|
T Consensus        68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  144 (220)
T cd03263          68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSL  144 (220)
T ss_pred             cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHH
Confidence            32 345678999999999999999999998865443   12333445678999999999988999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus       145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999999999999999999999976 589999999986 57789999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.9e-46  Score=368.69  Aligned_cols=210  Identities=25%  Similarity=0.420  Sum_probs=186.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++.+++|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (210)
T cd03269           1 LEVENVTKRF----------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----DSGEVLFDGKPLD   65 (210)
T ss_pred             CEEEEEEEEE----------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCCchh
Confidence            4689999887          346799999999999999999999999999999999999876     6899999998753


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .  ..++.++|++|++.+++.+|++||+.+....+   ..+..+.+++++++++.+|+++..++++.+||||||||++||
T Consensus        66 ~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  140 (210)
T cd03269          66 I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI  140 (210)
T ss_pred             H--HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence            2  45678999999999999999999998865443   123344566789999999999989999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus       141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence            9999999999999999999999999999999999878899999999976 577899999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-47  Score=367.01  Aligned_cols=224  Identities=25%  Similarity=0.392  Sum_probs=202.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||++++          +.-.+++|||+++++||+++|+||||||||||+|+|+|.++|     ++|+|.++|++
T Consensus         3 ~lL~v~~l~k~F----------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-----~~G~v~~~G~~   67 (250)
T COG0411           3 PLLEVRGLSKRF----------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-----SSGTVIFRGRD   67 (250)
T ss_pred             ceeeeccceeec----------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-----CCceEEECCcc
Confidence            357899999988          888999999999999999999999999999999999999997     68999999999


Q ss_pred             ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc--------CC-CCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625         99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL--------GN-QYSRKAKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      +...   +..+..++--||...+|+.|||.||+..++..+.        +. ....++..+++.++|+.+||.+.+|++.
T Consensus        68 it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A  147 (250)
T COG0411          68 ITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA  147 (250)
T ss_pred             cCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence            8643   3456789999999999999999999999865331        11 1124566788999999999999999999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ++||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++++ .|.||+++.||.. .+.++||||++|+.|
T Consensus       148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G  226 (250)
T COG0411         148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYG  226 (250)
T ss_pred             hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCC
Confidence            99999999999999999999999999999999999999999999999998 5799999999987 689999999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      +++.+|+|+++.+
T Consensus       227 ~~IAeG~P~eV~~  239 (250)
T COG0411         227 EVIAEGTPEEVRN  239 (250)
T ss_pred             cCcccCCHHHHhc
Confidence            9999999998754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=4e-46  Score=374.55  Aligned_cols=221  Identities=27%  Similarity=0.381  Sum_probs=191.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..      +.+.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 i~~~~l~~~~~~------~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   70 (233)
T cd03258           2 IELKNVSKVFGD------TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----TSGSVLVDGTDLT   70 (233)
T ss_pred             eEEecceEEccC------CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence            788999998721      00113799999999999999999999999999999999999986     6899999999864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ...++.++|++|++.+++.+|++||+.+....+   ........+.++++++.+||.+..++.+.+|||||||
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  147 (233)
T cd03258          71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ  147 (233)
T ss_pred             cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence            32     124678999999999999999999998865432   1233444567899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus       148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~  226 (233)
T cd03258         148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE  226 (233)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999875 899999999976 678899999999999999999876


Q ss_pred             Ch
Q psy12625        255 GL  256 (612)
Q Consensus       255 ~~  256 (612)
                      ++
T Consensus       227 ~~  228 (233)
T cd03258         227 EV  228 (233)
T ss_pred             HH
Confidence            54

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=4.3e-46  Score=372.85  Aligned_cols=220  Identities=22%  Similarity=0.321  Sum_probs=187.0

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+.+|+|.++|+++.
T Consensus         1 i~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   70 (227)
T cd03260           1 IELRDLNVYY----------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY   70 (227)
T ss_pred             CEEEEEEEEc----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence            4689999887          446799999999999999999999999999999999999811000136899999999864


Q ss_pred             c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc--cCCCChhhh
Q psy12625        101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL--TKHLSGGQK  174 (612)
Q Consensus       101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--~~~LSgGer  174 (612)
                      .    ...+++.++|++|++.++ .+||+||+.+......  ...+.+.+++++++++.+|+.+..+++  +.+||||||
T Consensus        71 ~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~  147 (227)
T cd03260          71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ  147 (227)
T ss_pred             hcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence            3    234567899999999888 7999999988654321  112223456788999999999877777  599999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ +|||++|||+. .+.+.||++++|++|++++.|+++
T Consensus       148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~  225 (227)
T cd03260         148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTE  225 (227)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCcc
Confidence            9999999999999999999999999999999999999999877 99999999986 578899999999999999999876


Q ss_pred             C
Q psy12625        255 G  255 (612)
Q Consensus       255 ~  255 (612)
                      +
T Consensus       226 ~  226 (227)
T cd03260         226 Q  226 (227)
T ss_pred             c
Confidence            5

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=6e-46  Score=370.09  Aligned_cols=216  Identities=26%  Similarity=0.420  Sum_probs=187.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..      ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~~------~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   69 (220)
T cd03293           1 LEVRNVSKTYGG------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-----TSGEVLVDGEPVT   69 (220)
T ss_pred             CeEEEEEEEcCC------CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECc
Confidence            468999998721      01116799999999999999999999999999999999999876     5899999999864


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .   .++.++|++|++.+++.+|++||+.+....+   ..+.+...++++++++.+||.+..++++++||||||||++||
T Consensus        70 ~---~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la  143 (220)
T cd03293          70 G---PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALA  143 (220)
T ss_pred             c---ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence            2   4578999999999999999999998875432   123344456789999999999989999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCcc
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVP  254 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~  254 (612)
                      |||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.+.||++++|+  +|+++..++.+
T Consensus       144 ~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence            999999999999999999999999999999999965 5899999999986 5788999999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.7e-46  Score=384.30  Aligned_cols=243  Identities=24%  Similarity=0.356  Sum_probs=203.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|+++.|..     .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         1 mi~~~~v~~~y~~-----~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   70 (288)
T PRK13643          1 MIKFEKVNYTYQP-----NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-----TEGKVTVGDIVV   70 (288)
T ss_pred             CEEEEEEEEEeCC-----CCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            3789999999831     000124699999999999999999999999999999999999986     689999999986


Q ss_pred             cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ..      ....++.+|||+|++  .+++ .||.||+.|+....   ..++.+.++++.++++.+||. +..++.+.+||
T Consensus        71 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS  146 (288)
T PRK13643         71 SSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELS  146 (288)
T ss_pred             ccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCC
Confidence            31      134678899999986  4555 69999999875432   234555677889999999996 57799999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||+|++|++|++++.
T Consensus       147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~  225 (288)
T PRK13643        147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC  225 (288)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999888999999999985 57789999999999999999


Q ss_pred             cCccChhh---HHhhcCCCCCCCCCchhHH
Q psy12625        251 GTVPGLVP---YLSDFGYQCPSNYNPADYV  277 (612)
Q Consensus       251 G~~~~~~~---~f~~~g~~~p~~~~~ad~~  277 (612)
                      |++++...   .+...|+.+|.....++.+
T Consensus       226 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  255 (288)
T PRK13643        226 GTPSDVFQEVDFLKAHELGVPKATHFADQL  255 (288)
T ss_pred             CCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence            99987643   3556777776655444433

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=3.9e-46  Score=376.39  Aligned_cols=220  Identities=28%  Similarity=0.420  Sum_probs=189.6

Q ss_pred             EEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         21 LLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      |+++||+++|          ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         1 l~~~~l~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   65 (241)
T cd03256           1 IEVENLSKTY----------PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----TSGSVLIDGTDI   65 (241)
T ss_pred             CEEeeEEEec----------CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEEECCEec
Confidence            4678999887          33 6799999999999999999999999999999999999876     589999999986


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc---C--CCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL---G--NQYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      ...     ...++.++|++|++.+++.+||+||+.+......   .  ........+++++++++.+||.+..++.+.+|
T Consensus        66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  145 (241)
T cd03256          66 NKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQL  145 (241)
T ss_pred             cccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccC
Confidence            432     2356789999999999999999999987532110   0  01112334567889999999998899999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+.++||++++|++|+++
T Consensus       146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~  224 (241)
T cd03256         146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIV  224 (241)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999986 4899999999986 577899999999999999


Q ss_pred             EecCccCh
Q psy12625        249 YQGTVPGL  256 (612)
Q Consensus       249 ~~G~~~~~  256 (612)
                      +.|++++.
T Consensus       225 ~~~~~~~~  232 (241)
T cd03256         225 FDGPPAEL  232 (241)
T ss_pred             eecCHHHh
Confidence            99988765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-45  Score=382.59  Aligned_cols=224  Identities=25%  Similarity=0.380  Sum_probs=192.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...     ....+.+|+|||+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~y~~~-----~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   71 (287)
T PRK13637          2 SIKIENLTHIYMEG-----TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----TSGKIIIDGVDI   71 (287)
T ss_pred             EEEEEEEEEECCCC-----CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEECCEEC
Confidence            48899999988310     00125799999999999999999999999999999999999986     689999999987


Q ss_pred             cch----HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc--cccCcccCCCChh
Q psy12625        100 QDH----RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TCKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgG  172 (612)
                      ...    ...++.+|||+|++. .+...||+||+.+.....   ..++++.+++++++++.+||.  +..++++.+||||
T Consensus        72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgG  148 (287)
T PRK13637         72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGG  148 (287)
T ss_pred             CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHH
Confidence            431    345788999999873 233579999999865432   244556667899999999997  6789999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.++||++++|++|++++.|
T Consensus       149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g  227 (287)
T PRK13637        149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQG  227 (287)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence            999999999999999999999999999999999999999999874 999999999975 577899999999999999999


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      +++++.
T Consensus       228 ~~~~~~  233 (287)
T PRK13637        228 TPREVF  233 (287)
T ss_pred             CHHHHH
Confidence            988764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=4e-46  Score=368.13  Aligned_cols=208  Identities=29%  Similarity=0.437  Sum_probs=185.0

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   65 (208)
T cd03268           1 LKTNDLTKTY----------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----DSGEITFDGKSYQ   65 (208)
T ss_pred             CEEEEEEEEE----------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCCccc
Confidence            4689999987          346799999999999999999999999999999999999886     6899999998764


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+||+||+.+.....   ..    .+++++++++.+|+.+..++++++|||||||||+||
T Consensus        66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (208)
T cd03268          66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA  138 (208)
T ss_pred             chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence            33345678999999999999999999998865432   11    245678899999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++||+. .+.+++|++++|++|++++.|
T Consensus       139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999888899999999986 577899999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=5.1e-46  Score=398.66  Aligned_cols=222  Identities=20%  Similarity=0.339  Sum_probs=196.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++|+|+|+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|+++
T Consensus         3 ~L~~~nls~~y----------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-----~sG~I~l~G~~i   67 (402)
T PRK09536          3 MIDVSDLSVEF----------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----TAGTVLVAGDDV   67 (402)
T ss_pred             eEEEeeEEEEE----------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----CCcEEEECCEEc
Confidence            58999999988          457899999999999999999999999999999999999986     689999999987


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ...+++.+|||+|++.+++.+||+||+.++....... ....+..+++++++++.+|+.+..++++.+||||||||
T Consensus        68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQR  147 (402)
T PRK09536         68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQR  147 (402)
T ss_pred             CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence            54  2456788999999999989999999998864221100 11123456788999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||||+.+|++|+|||||+|||+.++.+++++|++++++|+|||+++||++ ++.++|||+++|++|++++.|+++++
T Consensus       148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999999999999999999888899999999986 67899999999999999999999875


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       227 ~  227 (402)
T PRK09536        227 L  227 (402)
T ss_pred             h
Confidence            3

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1e-45  Score=373.21  Aligned_cols=218  Identities=25%  Similarity=0.399  Sum_probs=192.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         2 l~~~~l~~~~----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   66 (240)
T PRK09493          2 IEFKNVSKHF----------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-----TSGDLIVDGLKVN   66 (240)
T ss_pred             EEEEeEEEEE----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence            7899999987          346799999999999999999999999999999999999886     6899999999864


Q ss_pred             ch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        101 DH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..    ..+++.++|++|++.+++.+||+||+.+......  ...+.+.++++.++++.+||++..++++.+||||||||
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  144 (240)
T PRK09493         67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQR  144 (240)
T ss_pred             cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHH
Confidence            31    3456789999999999999999999987642111  22344456678999999999988899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus       145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (240)
T PRK09493        145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL  223 (240)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            99999999999999999999999999999999999999878999999999986 57789999999999999999987754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=5.6e-46  Score=393.72  Aligned_cols=208  Identities=22%  Similarity=0.351  Sum_probs=188.9

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--Hhh----ccceEEEcc
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RML----RKESCYIMQ  114 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~----~~~i~yv~Q  114 (612)
                      +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++...  ..+    ++.++||+|
T Consensus         4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q   78 (363)
T TIGR01186         4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-----TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ   78 (363)
T ss_pred             CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-----CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence            567799999999999999999999999999999999999986     689999999997542  233    678999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625        115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE  194 (612)
Q Consensus       115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE  194 (612)
                      ++.+++.+||+||+.+.....   ..++++.++++.++++.+||++..++++++|||||||||+|||||+.+|++|||||
T Consensus        79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE  155 (363)
T TIGR01186        79 QFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE  155 (363)
T ss_pred             CCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999999999999999876543   24455667889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||++||+.++..+.+.++++.+ .|+|||++|||.. ++.++||++++|++|+++..|+++++.
T Consensus       156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~  218 (363)
T TIGR01186       156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL  218 (363)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            9999999999999999999976 4899999999976 678999999999999999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-45  Score=378.44  Aligned_cols=219  Identities=26%  Similarity=0.347  Sum_probs=191.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|+         +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~~---------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   69 (274)
T PRK13647          4 IIEVEDLHFRYK---------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-----QRGRVKVMGREV   69 (274)
T ss_pred             eEEEEEEEEEeC---------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            589999999872         135699999999999999999999999999999999999986     689999999986


Q ss_pred             cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...  ...++.++|++|++. .+...||.||+.+.....   ..++.+.+++++++++.+||.+..++++.+||||||||
T Consensus        70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qr  146 (274)
T PRK13647         70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKR  146 (274)
T ss_pred             CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHH
Confidence            432  345678999999973 345689999998864322   23344556678999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++
T Consensus       147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999999999999999999999999999999999878999999999976 57789999999999999999998643

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.3e-45  Score=374.69  Aligned_cols=219  Identities=24%  Similarity=0.385  Sum_probs=192.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   67 (250)
T PRK11264          3 AIEVKNLVKKF----------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-----EAGTIRVGDITI   67 (250)
T ss_pred             cEEEeceEEEE----------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEc
Confidence            58999999987          345799999999999999999999999999999999999876     689999999886


Q ss_pred             cch----------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625        100 QDH----------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus       100 ~~~----------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      ...          ...++.++|++|++.+++.+||+||+.++.....  .......+++++++++.+||.+..++.+++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  145 (250)
T PRK11264         68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRL  145 (250)
T ss_pred             cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhC
Confidence            421          2346789999999999999999999987543211  1233445567889999999998889999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++
T Consensus       146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~  224 (250)
T PRK11264        146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE  224 (250)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999888999999999976 5778999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|++++.
T Consensus       225 ~~~~~~~  231 (250)
T PRK11264        225 QGPAKAL  231 (250)
T ss_pred             eCCHHHH
Confidence            9987654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=7.8e-46  Score=368.61  Aligned_cols=211  Identities=29%  Similarity=0.456  Sum_probs=181.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|..      ..+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~~------~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~   69 (218)
T cd03255           1 IELKNLSKTYGG------GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----TSGEVRVDGTDIS   69 (218)
T ss_pred             CeEeeeEEEecC------CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-----CceeEEECCEehh
Confidence            468999998721      00116799999999999999999999999999999999999886     6899999999864


Q ss_pred             chH-----h-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        101 DHR-----M-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       101 ~~~-----~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     . .++.++|++|++.+++.+||+||+.+....+   .......+++++++++.+||++..++.+++||||||
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  146 (218)
T cd03255          70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQ  146 (218)
T ss_pred             hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHH
Confidence            311     1 3467999999999999999999999875433   122334456789999999999989999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      ||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. .+. .||++++|++|++
T Consensus       147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence            999999999999999999999999999999999999999987 6899999999986 454 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.4e-45  Score=378.43  Aligned_cols=220  Identities=23%  Similarity=0.382  Sum_probs=192.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|++
T Consensus         6 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~   70 (269)
T PRK11831          6 NLVDMRGVSFTR----------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-----DHGEILFDGEN   70 (269)
T ss_pred             ceEEEeCeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEE
Confidence            369999999987          456799999999999999999999999999999999999886     68999999988


Q ss_pred             ccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625         99 LQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        99 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      +...     ...++.++|++|++.+++.+||.||+.+......  ..+....++++.++++.+||.+..++.+++|||||
T Consensus        71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq  148 (269)
T PRK11831         71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM  148 (269)
T ss_pred             ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence            6431     1245679999999999999999999988643211  12334445678899999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++|||+. .+.++||++++|++|++++.|+
T Consensus       149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~  227 (269)
T PRK11831        149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGS  227 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999864 899999999975 6788999999999999999998


Q ss_pred             ccCh
Q psy12625        253 VPGL  256 (612)
Q Consensus       253 ~~~~  256 (612)
                      ++++
T Consensus       228 ~~~~  231 (269)
T PRK11831        228 AQAL  231 (269)
T ss_pred             HHHH
Confidence            7755

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.2e-45  Score=373.34  Aligned_cols=217  Identities=24%  Similarity=0.446  Sum_probs=191.0

Q ss_pred             EEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         21 LLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      ++++|++++|          ++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         1 l~~~~l~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   65 (242)
T cd03295           1 IEFENVTKRY----------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-----TSGEIFIDGEDI   65 (242)
T ss_pred             CEEEEEEEEe----------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCeEc
Confidence            4678999887          33 6799999999999999999999999999999999999886     589999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc--ccCcccCCCChhhhh
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST--CKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerq  175 (612)
                      ..  ....++.++|++|++.+++.+||+||+.+.....   .....+.+++++++++.+|+.+  ..++++.+|||||||
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~q  142 (242)
T cd03295          66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQ  142 (242)
T ss_pred             CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHH
Confidence            43  2345678999999999999999999998865432   2233445667899999999986  789999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|+++
T Consensus       143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999874 899999999986 578899999999999999998876


Q ss_pred             Ch
Q psy12625        255 GL  256 (612)
Q Consensus       255 ~~  256 (612)
                      +.
T Consensus       222 ~~  223 (242)
T cd03295         222 EI  223 (242)
T ss_pred             HH
Confidence            54

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-45  Score=381.05  Aligned_cols=235  Identities=26%  Similarity=0.365  Sum_probs=196.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...     +...+++|+|||+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~y~~~-----~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   71 (290)
T PRK13634          2 DITFQKVEHRYQYK-----TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-----TSGTVTIGERVI   71 (290)
T ss_pred             EEEEEEEEEEECCC-----CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            48899999998320     00125699999999999999999999999999999999999886     689999999986


Q ss_pred             cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ..      ....++.+|||+|++  .++ ..||+||+.++....   ..++++.+++++++++.+||. +..++++.+||
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  147 (290)
T PRK13634         72 TAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELS  147 (290)
T ss_pred             ccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence            32      234567899999986  455 479999999875432   234455567889999999997 66899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+. .+.+.|||+++|++|++++
T Consensus       148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~  226 (290)
T PRK13634        148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL  226 (290)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999987 4999999999976 6788999999999999999


Q ss_pred             ecCccChhh---HHhhcCCCCCC
Q psy12625        250 QGTVPGLVP---YLSDFGYQCPS  269 (612)
Q Consensus       250 ~G~~~~~~~---~f~~~g~~~p~  269 (612)
                      .|+++++.+   .+...++.+|.
T Consensus       227 ~g~~~~~~~~~~~~~~~~~~~~~  249 (290)
T PRK13634        227 QGTPREIFADPDELEAIGLDLPE  249 (290)
T ss_pred             ECCHHHHhcCHHHHHHCCCCCCH
Confidence            999887642   23444554443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.9e-46  Score=375.10  Aligned_cols=220  Identities=28%  Similarity=0.368  Sum_probs=189.4

Q ss_pred             EEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         21 LLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      |+++||++.|          + ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 l~~~~l~~~~----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   66 (243)
T TIGR02315         2 LEVENLSKVY----------PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----SSGSILLEGTDI   66 (243)
T ss_pred             eEEEeeeeec----------CCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CccEEEECCEEh
Confidence            6889999887          3 46799999999999999999999999999999999999886     689999999886


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc---C--CCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL---G--NQYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      ...     ..+++.++|++|++.+++.+||+||+.++.....   .  ....+.+.+++++++++.+|+.+..++.+.+|
T Consensus        67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  146 (243)
T TIGR02315        67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQL  146 (243)
T ss_pred             hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccC
Confidence            431     2356789999999999999999999976431100   0  00112334567889999999998899999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|+++
T Consensus       147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~  225 (243)
T TIGR02315       147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIV  225 (243)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999976 4899999999986 577899999999999999


Q ss_pred             EecCccCh
Q psy12625        249 YQGTVPGL  256 (612)
Q Consensus       249 ~~G~~~~~  256 (612)
                      +.|+++++
T Consensus       226 ~~~~~~~~  233 (243)
T TIGR02315       226 FDGAPSEL  233 (243)
T ss_pred             ecCCHHHh
Confidence            99987754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-45  Score=383.35  Aligned_cols=224  Identities=21%  Similarity=0.295  Sum_probs=191.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...     +.....+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|++.
T Consensus         2 ~i~~~~l~~~y~~~-----~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----~~G~i~~~g~~~   71 (305)
T PRK13651          2 QIKVKNIVKIFNKK-----LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-----DTGTIEWIFKDE   71 (305)
T ss_pred             EEEEEEEEEEECCC-----CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEEeceec
Confidence            48999999998320     01124699999999999999999999999999999999999986     579999998754


Q ss_pred             c--------------------------chHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q psy12625        100 Q--------------------------DHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI  152 (612)
Q Consensus       100 ~--------------------------~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~  152 (612)
                      .                          ....+++.+|||+|++ ..+...||+||+.|+....   ..++++.+++++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~  148 (305)
T PRK13651         72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY  148 (305)
T ss_pred             ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence            1                          1134567899999985 2333579999999875432   24455667789999


Q ss_pred             HHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625        153 ADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS  231 (612)
Q Consensus       153 l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~  231 (612)
                      ++.+||. +..++++.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||.. .
T Consensus       149 l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~  227 (305)
T PRK13651        149 IELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-N  227 (305)
T ss_pred             HHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-H
Confidence            9999996 6889999999999999999999999999999999999999999999999999999888999999999975 5


Q ss_pred             HHhcccceeeecCCeEEEecCccChh
Q psy12625        232 LLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       232 i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +.+.|||+++|++|++++.|+++++.
T Consensus       228 ~~~~adrv~vl~~G~i~~~g~~~~~~  253 (305)
T PRK13651        228 VLEWTKRTIFFKDGKIIKDGDTYDIL  253 (305)
T ss_pred             HHHhCCEEEEEECCEEEEECCHHHHh
Confidence            78999999999999999999988764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1e-45  Score=368.69  Aligned_cols=215  Identities=27%  Similarity=0.443  Sum_probs=187.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   65 (222)
T cd03224           1 LEVENLNAGY----------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----RSGSIRFDGRDIT   65 (222)
T ss_pred             CEEeeEEeec----------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcC
Confidence            4689999887          345799999999999999999999999999999999999886     6899999998864


Q ss_pred             ch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-CCccccCcccCCCChhhhhH
Q psy12625        101 DH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  .. .++.++|++|++.+++.+|++||+.+......     ..+.+++++++++.+ ++.+..++++.+||||||||
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr  140 (222)
T cd03224          66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQM  140 (222)
T ss_pred             CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHH
Confidence            32  22 35679999999999999999999988654321     122345677888888 58888899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|+++..|++++.
T Consensus       141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            99999999999999999999999999999999999999878899999999976 57899999999999999999887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-46  Score=357.40  Aligned_cols=219  Identities=27%  Similarity=0.423  Sum_probs=194.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+..|          +..++|++||+++++||+++|+||||||||||||+|+|+.++     .+|+|.++|+++
T Consensus         3 mL~v~~l~~~Y----------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-----~~G~I~~~G~di   67 (237)
T COG0410           3 MLEVENLSAGY----------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-----RSGRIIFDGEDI   67 (237)
T ss_pred             ceeEEeEeecc----------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeeEEECCeec
Confidence            68999999887          778899999999999999999999999999999999999985     589999999998


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhh
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerq  175 (612)
                      ...   +..|..++||||...+|+.|||+|||..++..+..    ++..+...+++.+.|- |.+..+++.++|||||||
T Consensus        68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQ  143 (237)
T COG0410          68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQ  143 (237)
T ss_pred             CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHH
Confidence            643   44678999999999999999999999988654321    1222223788888884 888899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      -++|||||+++|++|+|||||.||-|.-..+|.+.+++++++ |.||+.+.++.. ...+++||.++|.+|+++++|+++
T Consensus       144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~  222 (237)
T COG0410         144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA  222 (237)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence            999999999999999999999999999999999999999974 789999988865 678999999999999999999998


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++..
T Consensus       223 eL~~  226 (237)
T COG0410         223 ELLA  226 (237)
T ss_pred             HHhc
Confidence            7753

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-45  Score=371.39  Aligned_cols=222  Identities=20%  Similarity=0.307  Sum_probs=191.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++.+++|+|+++++||+++|+||||||||||+++|+|+.+|......+|+|.++|+++
T Consensus         1 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~   70 (247)
T TIGR00972         1 AIEIENLNLFY----------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI   70 (247)
T ss_pred             CEEEEEEEEEE----------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEc
Confidence            37899999987          34569999999999999999999999999999999999998621111289999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .|++||+.+....+.  ..+..+.+++++++++.+||.    +..++.+++|||
T Consensus        71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  147 (247)
T TIGR00972        71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSG  147 (247)
T ss_pred             cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCH
Confidence            43    2345678999999999988 999999988654321  123344556789999999998    778899999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ +|||+++|++. .+.++||++++|++|++++.|
T Consensus       148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~  225 (247)
T TIGR00972       148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYG  225 (247)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeC
Confidence            9999999999999999999999999999999999999999999774 89999999986 578899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       226 ~~~~~  230 (247)
T TIGR00972       226 PTEQI  230 (247)
T ss_pred             CHHHH
Confidence            87765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=2.3e-45  Score=364.18  Aligned_cols=208  Identities=25%  Similarity=0.418  Sum_probs=183.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|.         +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~~---------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~   67 (214)
T TIGR02673         2 IEFHNVSKAYP---------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----SRGQVRIAGEDVN   67 (214)
T ss_pred             EEEEeeeEEeC---------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence            78999999872         235799999999999999999999999999999999999876     6899999999864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +.     ..+++.++|++|++.+++.+||+||+.+.....   .......+++++++++.+|+.+..++.+.+|||||||
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  144 (214)
T TIGR02673        68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ  144 (214)
T ss_pred             cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence            31     235678999999999999999999998875432   1233445567899999999998889999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus       145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence            999999999999999999999999999999999999999878999999999986 6788999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-45  Score=377.54  Aligned_cols=221  Identities=24%  Similarity=0.315  Sum_probs=193.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..       .+.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~~~-------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   71 (279)
T PRK13650          4 IIEVKNLTFKYKE-------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-----ESGQIIIDGDLL   71 (279)
T ss_pred             eEEEEeEEEEcCC-------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            5899999998831       1234699999999999999999999999999999999999986     689999999987


Q ss_pred             cc--hHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ....++.++|++|++ ..++..||+||+.+.....   ..++++..++++++++.+||++..++.+.+||||||||
T Consensus        72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qr  148 (279)
T PRK13650         72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQR  148 (279)
T ss_pred             CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence            43  234567899999997 3667789999998865432   23455566788999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|++|+++..|++++
T Consensus       149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~  226 (279)
T PRK13650        149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRE  226 (279)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999874 999999999986 45 5899999999999999999876


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      ..
T Consensus       227 ~~  228 (279)
T PRK13650        227 LF  228 (279)
T ss_pred             HH
Confidence            54

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-45  Score=382.56  Aligned_cols=236  Identities=23%  Similarity=0.324  Sum_probs=198.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|...     ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.+
T Consensus        20 ~~l~~~nl~~~y~~~-----~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----~~G~I~i~g~~   89 (320)
T PRK13631         20 IILRVKNLYCVFDEK-----QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-----KYGTIQVGDIY   89 (320)
T ss_pred             ceEEEEeEEEEeCCC-----CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCEE
Confidence            469999999998320     00124699999999999999999999999999999999999986     68999999987


Q ss_pred             ccc------------------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625         99 LQD------------------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI  158 (612)
Q Consensus        99 ~~~------------------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL  158 (612)
                      +.+                  ...+++.++||+|++  .+++ .||+||+.++....   ..+.++..++++++++.+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL  165 (320)
T PRK13631         90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGL  165 (320)
T ss_pred             cccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence            632                  134578899999987  4665 59999998865321   23445556788999999999


Q ss_pred             c-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625        159 S-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       159 ~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      . +..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||
T Consensus       166 ~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad  244 (320)
T PRK13631        166 DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD  244 (320)
T ss_pred             ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence            7 6789999999999999999999999999999999999999999999999999999878999999999976 5778999


Q ss_pred             ceeeecCCeEEEecCccChhh---HHhhcCCCCCC
Q psy12625        238 YLYVLTEGYCTYQGTVPGLVP---YLSDFGYQCPS  269 (612)
Q Consensus       238 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~p~  269 (612)
                      ++++|++|+++..|++++..+   .+...|+..|.
T Consensus       245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~  279 (320)
T PRK13631        245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR  279 (320)
T ss_pred             EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence            999999999999999887643   24455555443

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=3e-45  Score=363.27  Aligned_cols=209  Identities=24%  Similarity=0.388  Sum_probs=183.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|.         +.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~---------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~   66 (214)
T cd03292           1 IEFINVTKTYP---------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----TSGTIRVNGQDVS   66 (214)
T ss_pred             CEEEEEEEEeC---------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcc
Confidence            46789999872         125799999999999999999999999999999999999886     6899999999864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ...++.++|++|++.+++.+|++||+.+.....   ....++.+++++++++.+|+++..++++.+|||||||
T Consensus        67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  143 (214)
T cd03292          67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQ  143 (214)
T ss_pred             cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHH
Confidence            31     235678999999999999999999998875432   1233445567899999999999899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++
T Consensus       144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999999999878999999999976 57788999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=2.5e-45  Score=363.19  Aligned_cols=210  Identities=29%  Similarity=0.457  Sum_probs=184.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++++|+|+++++| +++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~~~~~~----------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   64 (211)
T cd03264           1 LQLENLTKRY----------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----SSGTIRIDGQDVL   64 (211)
T ss_pred             CEEEEEEEEE----------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCCccc
Confidence            4689999987          3457999999999999 9999999999999999999999886     6899999998764


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      +. ..+++.++|++|++.+++.+||+||+.+.....   ..++.+.+++++++++.+||.+..++.+.+||||||||++|
T Consensus        65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  141 (211)
T cd03264          65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGI  141 (211)
T ss_pred             cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHH
Confidence            32 345678999999999999999999998865443   12333445678899999999988899999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+++|++++|++|++++.|
T Consensus       142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999986 589999999986 577899999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.3e-45  Score=378.65  Aligned_cols=207  Identities=23%  Similarity=0.333  Sum_probs=183.1

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--Hh----hccceEEEcc
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RM----LRKESCYIMQ  114 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~----~~~~i~yv~Q  114 (612)
                      +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.+.  ..    .++.++|++|
T Consensus        35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q  109 (269)
T cd03294          35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-----TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ  109 (269)
T ss_pred             CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence            667899999999999999999999999999999999999986     589999999986432  11    2357999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625        115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE  194 (612)
Q Consensus       115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE  194 (612)
                      ++.+++.+||+||+.+.....   .....+.+++++++++.+||.+..++++++||||||||++|||||+.+|++|||||
T Consensus       110 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE  186 (269)
T cd03294         110 SFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE  186 (269)
T ss_pred             CcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999999999999998875432   12334455678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ||+|||+.++..+.+.|+++++ +|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus       187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  248 (269)
T cd03294         187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI  248 (269)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999976 4899999999976 57889999999999999999987765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=5e-45  Score=367.34  Aligned_cols=217  Identities=26%  Similarity=0.426  Sum_probs=189.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         2 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~i~   66 (236)
T TIGR03864         2 LEVAGLSFAY----------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-----QEGQISVAGHDLR   66 (236)
T ss_pred             EEEEeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEcc
Confidence            7889999987          346799999999999999999999999999999999999886     6899999998864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ...++.++|++|++.+++.+|++||+.+....+   .....+..+.++++++.+||.+..++.+++||||||||++|
T Consensus        67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l  143 (236)
T TIGR03864        67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEI  143 (236)
T ss_pred             cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence            32 223457999999998888999999998765432   22334445678899999999998999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||+++|++. .+. .+|++++|++|+++..|++++..
T Consensus       144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence            9999999999999999999999999999999999985 6899999999986 454 59999999999999998876553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=4.3e-45  Score=384.22  Aligned_cols=233  Identities=22%  Similarity=0.292  Sum_probs=197.0

Q ss_pred             ceeEEEEeEEEEEEeecc---ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         18 HFNLLFQDISYSALYYDT---HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~---~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ...|+++||++.|.....   .++..+...+++|||+++++||+++|+|+||||||||+++|+|+++|     .+|+|.+
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----~~G~I~~   80 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----TDGEVAW   80 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CCcEEEE
Confidence            347999999999843100   00011235799999999999999999999999999999999999986     5899999


Q ss_pred             CCEeccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCccc
Q psy12625         95 NETRLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLT  166 (612)
Q Consensus        95 ~g~~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~  166 (612)
                      +|+++.+.     ..+++.++||+|++  .++|.+||.||+.+......+ ..++++.+++++++++.+||. +..++++
T Consensus        81 ~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p  159 (331)
T PRK15079         81 LGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP  159 (331)
T ss_pred             CCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence            99987532     23567899999997  688899999999886543211 234556677889999999994 5789999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      .+|||||||||+|||||+.+|++|++||||+|||+.++.+++++|+++.+ .|.|+|++|||+. .+.++||++++|++|
T Consensus       160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G  238 (331)
T PRK15079        160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLG  238 (331)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999987 4999999999976 577899999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+++++.
T Consensus       239 ~ive~g~~~~i~  250 (331)
T PRK15079        239 HAVELGTYDEVY  250 (331)
T ss_pred             EEEEEcCHHHHH
Confidence            999999987654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-45  Score=370.04  Aligned_cols=219  Identities=23%  Similarity=0.444  Sum_probs=193.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   67 (241)
T PRK10895          3 TLTAKNLAKAY----------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-----DAGNIIIDDEDI   67 (241)
T ss_pred             eEEEeCcEEEe----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence            58899999987          346799999999999999999999999999999999999886     689999999986


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...   ...++.++|++|++.+++.+||+||+.+......  ...+++.+++++++++.+|+.+..++.+++||||||||
T Consensus        68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  145 (241)
T PRK10895         68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRR  145 (241)
T ss_pred             CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHH
Confidence            432   2246789999999999999999999987643221  12334455678999999999988899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            99999999999999999999999999999999999999878999999999975 67899999999999999999987765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-45  Score=368.88  Aligned_cols=219  Identities=26%  Similarity=0.416  Sum_probs=191.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ++|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|++
T Consensus         1 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~   65 (242)
T PRK11124          1 MSIQLNGINCFY----------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-----RSGTLNIAGNH   65 (242)
T ss_pred             CEEEEEeeEEEE----------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEe
Confidence            368899999988          446799999999999999999999999999999999999886     68999999987


Q ss_pred             cc-----c---hHhhccceEEEccCCCCCCCCCHHHHHHHH-HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625         99 LQ-----D---HRMLRKESCYIMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~-----~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      +.     .   ....++.++|++|++.+++.+||.||+.+. ....   .....+..+++.++++.+|+.+..++.+.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  142 (242)
T PRK11124         66 FDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHL  142 (242)
T ss_pred             cccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence            52     1   123567899999999999999999999753 2221   1223344567899999999998899999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+++|++++|++|++++
T Consensus       143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~  221 (242)
T PRK11124        143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVE  221 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999878999999999986 5678899999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|++++.
T Consensus       222 ~~~~~~~  228 (242)
T PRK11124        222 QGDASCF  228 (242)
T ss_pred             eCCHHHh
Confidence            9987653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.7e-45  Score=362.89  Aligned_cols=202  Identities=34%  Similarity=0.490  Sum_probs=176.9

Q ss_pred             EEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625         23 FQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD  101 (612)
Q Consensus        23 ~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~  101 (612)
                      ++|++++|          ++ +++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++..
T Consensus         2 ~~~l~~~~----------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~   66 (205)
T cd03226           2 IENISFSY----------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-----SSGSILLNGKPIKA   66 (205)
T ss_pred             cccEEEEe----------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEhhh
Confidence            57888887          33 6799999999999999999999999999999999999886     68999999998643


Q ss_pred             hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        102 HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       102 ~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                       ...++.++|++|++. .+..+|++||+.+.....     .  ..+++++++++.+||.+..++++++||||||||++||
T Consensus        67 -~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (205)
T cd03226          67 -KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA  138 (205)
T ss_pred             -HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence             345678999999974 334579999998754321     1  1235688999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus       139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence            9999999999999999999999999999999999878999999999986 577899999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=6.1e-45  Score=371.37  Aligned_cols=219  Identities=25%  Similarity=0.366  Sum_probs=192.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~   69 (257)
T PRK10619          5 KLNVIDLHKRY----------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGSIVVNGQTI   69 (257)
T ss_pred             cEEEeeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEc
Confidence            48999999988          446799999999999999999999999999999999999886     689999999876


Q ss_pred             cc---------------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-C
Q psy12625        100 QD---------------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-N  163 (612)
Q Consensus       100 ~~---------------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~  163 (612)
                      ..               ...+++.++|++|++.+++.+||+||+.++.....  ...+.+.++++.++++.+|+.+.. +
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~  147 (257)
T PRK10619         70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG  147 (257)
T ss_pred             ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence            31               12456789999999999999999999987542111  123445567789999999998764 8


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +.+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|+
T Consensus       148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~  226 (257)
T PRK10619        148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH  226 (257)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence            889999999999999999999999999999999999999999999999999888999999999976 5778899999999


Q ss_pred             CCeEEEecCccCh
Q psy12625        244 EGYCTYQGTVPGL  256 (612)
Q Consensus       244 ~G~iv~~G~~~~~  256 (612)
                      +|++++.|++++.
T Consensus       227 ~G~i~~~~~~~~~  239 (257)
T PRK10619        227 QGKIEEEGAPEQL  239 (257)
T ss_pred             CCEEEEeCCHHHh
Confidence            9999999987765

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-45  Score=377.51  Aligned_cols=223  Identities=24%  Similarity=0.331  Sum_probs=191.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..     .....+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         2 ~i~~~~l~~~~~~-----~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   71 (287)
T PRK13641          2 SIKFENVDYIYSP-----GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-----SSGTITIAGYHI   71 (287)
T ss_pred             EEEEEEEEEEcCC-----CCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            5889999998821     000125699999999999999999999999999999999999986     689999999986


Q ss_pred             cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ..      ....++.++|++|++  .++ .+||+||+.+.....   ...+++.+++++++++.+||+ +..++++++||
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  147 (287)
T PRK13641         72 TPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELS  147 (287)
T ss_pred             ccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCC
Confidence            32      134567899999997  344 589999998765432   233455567789999999997 67899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus       148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~  226 (287)
T PRK13641        148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH  226 (287)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999878999999999976 67899999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       227 g~~~~~~  233 (287)
T PRK13641        227 ASPKEIF  233 (287)
T ss_pred             CCHHHHh
Confidence            9987654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-45  Score=365.51  Aligned_cols=218  Identities=25%  Similarity=0.351  Sum_probs=187.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..      +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~~~------~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~i   73 (233)
T PRK11629          5 LLQCDNLCKRYQE------GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-----TSGDVIFNGQPM   73 (233)
T ss_pred             eEEEEeEEEEcCC------CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEc
Confidence            5899999998831      00125699999999999999999999999999999999999876     689999999986


Q ss_pred             cch--H---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH--R---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~--~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ...  .   .. ++.++|++|++.+++.+|++||+.+.....   ...+++.+++++++++.+||.+..++.+.+|||||
T Consensus        74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  150 (233)
T PRK11629         74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE  150 (233)
T ss_pred             CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence            432  1   12 367999999999999999999998865432   22334455678999999999998999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++|||+. ++.. +|++++|++|++++.|+
T Consensus       151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEec
Confidence            9999999999999999999999999999999999999999976 5899999999986 4544 68999999999998886


Q ss_pred             c
Q psy12625        253 V  253 (612)
Q Consensus       253 ~  253 (612)
                      .
T Consensus       229 ~  229 (233)
T PRK11629        229 L  229 (233)
T ss_pred             c
Confidence            4

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=4.8e-45  Score=361.57  Aligned_cols=209  Identities=28%  Similarity=0.425  Sum_probs=183.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (213)
T cd03262           1 IEIKNLHKSF----------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----DSGTIIIDGLKLT   65 (213)
T ss_pred             CEEEEEEEEE----------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEECC
Confidence            4689999987          346799999999999999999999999999999999999886     6899999999863


Q ss_pred             c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      .    ...+++.++|++|++.+++.+|++||+.+......  .....+.+++++++++.+|+.+..++++.+||||||||
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  143 (213)
T cd03262          66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQR  143 (213)
T ss_pred             ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHH
Confidence            2    13456789999999999999999999988643111  22334455678999999999998999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      ++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++
T Consensus       144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999999999888899999999986 67789999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-45  Score=373.08  Aligned_cols=219  Identities=24%  Similarity=0.359  Sum_probs=190.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         1 ml~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   65 (271)
T PRK13638          1 MLATSDLWFRY----------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-----QKGAVLWQGKPL   65 (271)
T ss_pred             CeEEEEEEEEc----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CccEEEECCEEc
Confidence            37899999987          446799999999999999999999999999999999999886     689999999986


Q ss_pred             cc----hHhhccceEEEccCCCC-CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QD----HRMLRKESCYIMQDNLL-QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ..    ....++.++|++|++.. +...|+.||+.+.....   ....++..++++++++.+|+.+..++++.+||||||
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  142 (271)
T PRK13638         66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQK  142 (271)
T ss_pred             ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence            31    12456789999999753 34468999998764332   223444456788999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||++||++|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++||+. .+.++||++++|++|++++.|+++
T Consensus       143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~  221 (271)
T PRK13638        143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG  221 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999999877899999999986 577899999999999999999887


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      ++.
T Consensus       222 ~~~  224 (271)
T PRK13638        222 EVF  224 (271)
T ss_pred             HHh
Confidence            653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-44  Score=374.72  Aligned_cols=221  Identities=29%  Similarity=0.398  Sum_probs=192.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|.         +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----~~G~i~i~g~~~   70 (283)
T PRK13636          5 ILKVEELNYNYS---------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----SSGRILFDGKPI   70 (283)
T ss_pred             eEEEEeEEEEeC---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CccEEEECCEEC
Confidence            689999999882         235699999999999999999999999999999999999886     689999999986


Q ss_pred             c--c--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 Q--D--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~--~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      .  .  ...+++.++|++|++. .+...||+||+.+.....   ..+..+.+++++++++.+||.+..++++.+||||||
T Consensus        71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~  147 (283)
T PRK13636         71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQK  147 (283)
T ss_pred             CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHH
Confidence            3  1  2346788999999973 234579999998864322   234455567789999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.++||++++|++|++++.|++
T Consensus       148 qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~  226 (283)
T PRK13636        148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNP  226 (283)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999875 899999999986 57789999999999999999998


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      ++...
T Consensus       227 ~~~~~  231 (283)
T PRK13636        227 KEVFA  231 (283)
T ss_pred             HHHhc
Confidence            87643

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.3e-45  Score=376.77  Aligned_cols=223  Identities=25%  Similarity=0.374  Sum_probs=191.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...     ....+++|+|||+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~y~~~-----~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----~~G~i~~~g~~i   71 (286)
T PRK13646          2 TIRFDNVSYTYQKG-----TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-----TTGTVTVDDITI   71 (286)
T ss_pred             EEEEEEEEEEECCC-----CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            58999999998310     00125699999999999999999999999999999999999986     689999999986


Q ss_pred             cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ..      ...+++.+|||+|++  .+++ .||+||+.+.....   ..++.+.+++++++++.+||. +..++.+.+||
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  147 (286)
T PRK13646         72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS  147 (286)
T ss_pred             ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence            42      134678899999986  4555 59999999865332   234455667889999999997 67899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|++++
T Consensus       148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~  226 (286)
T PRK13646        148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS  226 (286)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999986 5999999999976 5778999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       227 ~g~~~~~~  234 (286)
T PRK13646        227 QTSPKELF  234 (286)
T ss_pred             ECCHHHHH
Confidence            99987754

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-44  Score=369.06  Aligned_cols=224  Identities=19%  Similarity=0.276  Sum_probs=190.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|..+.+.+|+|.++|++
T Consensus         6 ~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   75 (254)
T PRK14273          6 AIIETENLNLFY----------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN   75 (254)
T ss_pred             ceEEEeeeEEEe----------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe
Confidence            379999999987          3467999999999999999999999999999999999999863222358999999988


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LS  170 (612)
                      +..    ....++.++|++|++.+++ +||+||+.+......  .......+++++++++.+|+    .+..++.+++||
T Consensus        76 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  152 (254)
T PRK14273         76 IYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS  152 (254)
T ss_pred             cccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence            632    1345778999999988885 999999988654321  11233445678889999987    456788999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+++.|+++++ ++|||+++|++. .+.+++|++++|++|+++..
T Consensus       153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~  230 (254)
T PRK14273        153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEE  230 (254)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999964 789999999986 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       231 g~~~~~~  237 (254)
T PRK14273        231 SSTDELF  237 (254)
T ss_pred             CCHHHHH
Confidence            9887653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=369.30  Aligned_cols=223  Identities=21%  Similarity=0.320  Sum_probs=190.3

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+
T Consensus        10 ~~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~   79 (258)
T PRK14268         10 QPQIKVENLNLWY----------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE   79 (258)
T ss_pred             ceeEEEeeeEEEe----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence            4479999999987          446799999999999999999999999999999999999874211136899999998


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.+++ +|++||+.+.....   ..+.++.+++++++++.+|+.    +..++.+.+|
T Consensus        80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  155 (258)
T PRK14268         80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSL  155 (258)
T ss_pred             EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhC
Confidence            8642    1235678999999998888 89999998865432   123344456788999999983    5578899999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|++|++++
T Consensus       156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~  233 (258)
T PRK14268        156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIE  233 (258)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999965 799999999976 5778999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|+++++
T Consensus       234 ~~~~~~~  240 (258)
T PRK14268        234 FGQTRQI  240 (258)
T ss_pred             eCCHHHH
Confidence            9988765

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-45  Score=367.18  Aligned_cols=217  Identities=24%  Similarity=0.410  Sum_probs=190.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~   69 (237)
T PRK11614          5 MLSFDKVSAHY----------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-----TSGRIVFDGKDI   69 (237)
T ss_pred             EEEEEeEEEee----------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCceEEECCEec
Confidence            68999999987          346799999999999999999999999999999999999886     689999999986


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-CCccccCcccCCCChhhhh
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerq  175 (612)
                      ...   ...++.++|++|++.+++.+||.||+.++....     ...+.++.++++++.+ ++.+..++++.+|||||||
T Consensus        70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q  144 (237)
T PRK11614         70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ  144 (237)
T ss_pred             CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH
Confidence            432   224678999999999999999999998764221     1222345677888888 5887788899999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus       145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  223 (237)
T PRK11614        145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA  223 (237)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence            999999999999999999999999999999999999999888999999999975 6789999999999999999999876


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       224 ~~  225 (237)
T PRK11614        224 LL  225 (237)
T ss_pred             Hh
Confidence            63

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.1e-44  Score=361.61  Aligned_cols=211  Identities=22%  Similarity=0.388  Sum_probs=185.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|.         +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~   67 (222)
T PRK10908          2 IRFEHVSKAYL---------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-----SAGKIWFSGHDIT   67 (222)
T ss_pred             EEEEeeEEEec---------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence            78899999872         235799999999999999999999999999999999999886     6899999998864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ..+++.++|++|++.+++.+|++||+.+.....   ..+.++.+++++++++.+|+.+..++.+.+|||||||
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  144 (222)
T PRK10908         68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ  144 (222)
T ss_pred             cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence            31     125678999999998888999999998865432   2233444567889999999998889999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++.
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence            999999999999999999999999999999999999999878899999999986 5778999999999999753

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.5e-44  Score=361.59  Aligned_cols=223  Identities=36%  Similarity=0.540  Sum_probs=189.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+.++|++++++.      ....+++|+|+|+++++||+++|+||||||||||+|+|+|+.++  ..+.+|+|.++|+++
T Consensus         3 ~~~~~~~~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~--~~~~~G~i~~~g~~~   74 (226)
T cd03234           3 VLPWWDVGLKAKN------WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG--GGTTSGQILFNGQPR   74 (226)
T ss_pred             cceeecceeeeec------CccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCC--CCCCceEEEECCEEC
Confidence            4678999999842      11147899999999999999999999999999999999999871  012689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS-IADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      .. ...++.++|++|++.+++.+||+||+.+......+....+....+++++ .++.+++++..++.+++||||||||++
T Consensus        75 ~~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~  153 (226)
T cd03234          75 KP-DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS  153 (226)
T ss_pred             Ch-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHH
Confidence            43 4567889999999999999999999998755432221122223344555 899999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus       154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999999999999999999999998788999999999854688999999999999998865

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.9e-45  Score=369.12  Aligned_cols=218  Identities=24%  Similarity=0.364  Sum_probs=190.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~   65 (252)
T TIGR03005         1 VRFSDVTKRF----------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-----DEGQIQVEGEQLY   65 (252)
T ss_pred             CEEEEEEEEe----------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence            4689999987          346799999999999999999999999999999999999886     6899999998863


Q ss_pred             ch---------------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc
Q psy12625        101 DH---------------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL  165 (612)
Q Consensus       101 ~~---------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  165 (612)
                      ..               ..+++.++|++|++.+++..|+.||+.++.....  .....+.+++++++++.+|+.+..++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~  143 (252)
T TIGR03005        66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM  143 (252)
T ss_pred             ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence            21               2356789999999999999999999987542211  123344556789999999999999999


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++|++++|++
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~  222 (252)
T TIGR03005       144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK  222 (252)
T ss_pred             hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999874 899999999986 57789999999999


Q ss_pred             CeEEEecCccCh
Q psy12625        245 GYCTYQGTVPGL  256 (612)
Q Consensus       245 G~iv~~G~~~~~  256 (612)
                      |++++.|++++.
T Consensus       223 G~i~~~g~~~~~  234 (252)
T TIGR03005       223 GRIVEQGKPDEI  234 (252)
T ss_pred             CEEEEeCCHHHH
Confidence            999999987654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-44  Score=368.23  Aligned_cols=213  Identities=25%  Similarity=0.381  Sum_probs=187.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|+++.|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++
T Consensus         1 ml~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   65 (255)
T PRK11248          1 MLQISHLYADY----------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----QHGSITLDGKPV   65 (255)
T ss_pred             CEEEEEEEEEe----------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence            37899999987          346799999999999999999999999999999999999886     689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      ..   .++.++|++|++.+++.+||+||+.+.....   .....+.+++++++++.+||.+..++++.+||||||||++|
T Consensus        66 ~~---~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~l  139 (255)
T PRK11248         66 EG---PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGI  139 (255)
T ss_pred             CC---CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHH
Confidence            43   2346899999999999999999998765432   22344455678999999999988899999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCcc
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVP  254 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~  254 (612)
                      |++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+. .+.++||++++|+  +|+++..++.+
T Consensus       140 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            9999999999999999999999999999999999965 6899999999986 6788999999998  59999887654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6e-45  Score=360.45  Aligned_cols=208  Identities=31%  Similarity=0.457  Sum_probs=179.1

Q ss_pred             EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625         22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD  101 (612)
Q Consensus        22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~  101 (612)
                      +++|+++.|.        ..++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++..
T Consensus         1 ~~~~l~~~~~--------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~   67 (211)
T cd03225           1 ELKNLSFSYP--------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----TSGEVLVDGKDLTK   67 (211)
T ss_pred             CceeEEEecC--------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEEccc
Confidence            3578888772        1126799999999999999999999999999999999999886     68999999988643


Q ss_pred             --hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        102 --HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       102 --~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                        ...+++.++|++|++. .++.+|++||+.+.....   .......+++++++++.+||.+..++++++||||||||++
T Consensus        68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  144 (211)
T cd03225          68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA  144 (211)
T ss_pred             CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence              2345678999999974 356789999998865432   1233444567889999999998889999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      |||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus       145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~  211 (211)
T cd03225         145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence            999999999999999999999999999999999999878999999999976 6778899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-44  Score=369.95  Aligned_cols=219  Identities=28%  Similarity=0.427  Sum_probs=190.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         2 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----~~G~i~~~g~~~   66 (258)
T PRK13548          2 MLEARNLSVRL----------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-----DSGEVRLNGRPL   66 (258)
T ss_pred             eEEEEeEEEEe----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEc
Confidence            48899999987          446799999999999999999999999999999999999886     689999999886


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..  ....++.++|++|++.+++.+||+||+.+.....   ....+..+++++++++.+|+.+..++.+++||||||||+
T Consensus        67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv  143 (258)
T PRK13548         67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV  143 (258)
T ss_pred             ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence            43  2334568999999998888899999998864321   112233456788999999999989999999999999999


Q ss_pred             HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        178 SIALELL------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       178 ~ia~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      +||+||+      .+|++++|||||+|||+.++..+.+.|++++ ++|+|||+++||+. .+.++||++++|++|++++.
T Consensus       144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~  222 (258)
T PRK13548        144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD  222 (258)
T ss_pred             HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence            9999999      5999999999999999999999999999998 57899999999976 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       223 ~~~~~~~  229 (258)
T PRK13548        223 GTPAEVL  229 (258)
T ss_pred             CCHHHHh
Confidence            9876653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=366.88  Aligned_cols=225  Identities=22%  Similarity=0.315  Sum_probs=191.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i   72 (250)
T PRK14247          3 KIEIRDLKVSF----------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI   72 (250)
T ss_pred             eEEEEeeEEEE----------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence            58899999987          34679999999999999999999999999999999999987421113689999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCChhh
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGe  173 (612)
                      ..  ...+++.++|++|++.+++.+||+||+.+....... ....++.++.++++++.+||.+    ..++.+.+|||||
T Consensus        73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  151 (250)
T PRK14247         73 FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ  151 (250)
T ss_pred             CcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence            43  234567899999999888899999999886543210 1123444567889999999853    5688899999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. .+.+.||++++|++|+++..|++
T Consensus       152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~  229 (250)
T PRK14247        152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPT  229 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCH
Confidence            9999999999999999999999999999999999999999965 799999999986 57789999999999999999988


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       230 ~~~~  233 (250)
T PRK14247        230 REVF  233 (250)
T ss_pred             HHHH
Confidence            7653

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-44  Score=379.80  Aligned_cols=231  Identities=21%  Similarity=0.290  Sum_probs=195.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|..........+.+.+|+|||++|++||+++|+|+||||||||+++|+|+++|     .+|+|.++|++
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----~~G~i~~~g~~   78 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-----TGGELYYQGQD   78 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCcEEEECCEE
Confidence            3689999999984310000001235799999999999999999999999999999999999886     58999999998


Q ss_pred             ccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625         99 LQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      +...     ..+++.++||+|++  .+.+.+|+.+++........  ...+.+.++++.++++.+||. ...++++++||
T Consensus        79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LS  156 (327)
T PRK11308         79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFS  156 (327)
T ss_pred             cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCC
Confidence            7432     23567899999998  58899999999987654321  234555667899999999996 46799999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||+|||||+.+|++||+||||++||..++.+++++|+++++ .|+|+|++|||.. .+.++||+|++|++|++++
T Consensus       157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive  235 (327)
T PRK11308        157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVE  235 (327)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999987 5999999999976 5778999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       236 ~g~~~~~~  243 (327)
T PRK11308        236 KGTKEQIF  243 (327)
T ss_pred             ECCHHHHh
Confidence            99987764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-45  Score=389.17  Aligned_cols=229  Identities=21%  Similarity=0.273  Sum_probs=196.2

Q ss_pred             eEEEEeEEEEEEeecc--------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC
Q psy12625         20 NLLFQDISYSALYYDT--------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT   85 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~--------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~   85 (612)
                      .|+++||++.|-....              ..+.++...+|+|+|+++++||+++|+||||||||||||+|+|+++|   
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p---   80 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP---   80 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---
Confidence            5889999988743210              01122344589999999999999999999999999999999999986   


Q ss_pred             CCceeEEEECCEeccch--Hh----hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc
Q psy12625         86 ETNSGYIEINETRLQDH--RM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS  159 (612)
Q Consensus        86 ~~~~G~I~~~g~~~~~~--~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~  159 (612)
                        .+|+|.++|+++...  ..    .++.++||+|++.+++.+||+||+.+....+   ..+.++.+++++++++.+||+
T Consensus        81 --~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~  155 (400)
T PRK10070         81 --TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLE  155 (400)
T ss_pred             --CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence              689999999987532  11    2457999999999999999999999876543   233445567889999999999


Q ss_pred             cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccc
Q psy12625        160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       160 ~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~  238 (612)
                      +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||+
T Consensus       156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr  234 (400)
T PRK10070        156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR  234 (400)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence            999999999999999999999999999999999999999999999999999999976 5899999999976 67889999


Q ss_pred             eeeecCCeEEEecCccChh
Q psy12625        239 LYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       239 v~~L~~G~iv~~G~~~~~~  257 (612)
                      +++|++|+++..|+++++.
T Consensus       235 i~vL~~G~i~~~g~~~~l~  253 (400)
T PRK10070        235 IAIMQNGEVVQVGTPDEIL  253 (400)
T ss_pred             EEEEECCEEEecCCHHHHH
Confidence            9999999999999887653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-44  Score=371.84  Aligned_cols=218  Identities=24%  Similarity=0.324  Sum_probs=190.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|.         +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|.++.
T Consensus         2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~   67 (274)
T PRK13644          2 IRLENVSYSYP---------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-----QKGKVLVSGIDTG   67 (274)
T ss_pred             EEEEEEEEEcC---------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEECC
Confidence            78899999872         235699999999999999999999999999999999999886     6899999999864


Q ss_pred             ch---HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        101 DH---RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..   ...++.++|++|++. .+...|+.||+.+.....   ..+..+.+++++++++.+||.+..++++++||||||||
T Consensus        68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  144 (274)
T PRK13644         68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQC  144 (274)
T ss_pred             ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHH
Confidence            31   345678999999975 356689999998765332   23445556778999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++|++++.|++++.
T Consensus       145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999999999878999999999986 45 57999999999999999998765


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       223 ~  223 (274)
T PRK13644        223 L  223 (274)
T ss_pred             h
Confidence            3

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=367.34  Aligned_cols=224  Identities=22%  Similarity=0.320  Sum_probs=190.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (253)
T PRK14267          4 AIETVNLRVYY----------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI   73 (253)
T ss_pred             eEEEEeEEEEe----------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence            58999999987          34679999999999999999999999999999999999987621113589999999986


Q ss_pred             c--c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 Q--D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~--~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      .  +  ...+++.++|++|++.+++.+||.||+.+....+. ...+.++..++++++++.+|+.    +..++.+.+|||
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  152 (253)
T PRK14267         74 YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG  152 (253)
T ss_pred             cccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence            4  1  23456789999999999999999999988654321 0112334456788999999984    456888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus       153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~  230 (253)
T PRK14267        153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVG  230 (253)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999975 689999999976 578899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      +++++
T Consensus       231 ~~~~~  235 (253)
T PRK14267        231 PTRKV  235 (253)
T ss_pred             CHHHH
Confidence            87765

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-44  Score=372.50  Aligned_cols=220  Identities=26%  Similarity=0.337  Sum_probs=192.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..        ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----~~G~i~~~g~~i   71 (279)
T PRK13635          5 IIRVEHISFRYPD--------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-----EAGTITVGGMVL   71 (279)
T ss_pred             eEEEEEEEEEeCC--------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            5899999998721        235699999999999999999999999999999999999986     689999999987


Q ss_pred             cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...  ...++.++|++|++. .++..||.||+.+.....   ..+.++.+++++++++.+||.+..++++.+||||||||
T Consensus        72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr  148 (279)
T PRK13635         72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR  148 (279)
T ss_pred             CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence            532  345678999999973 666789999998865432   23445556778999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus       149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~  226 (279)
T PRK13635        149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEE  226 (279)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999875 899999999986 454 699999999999999999876


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       227 ~~  228 (279)
T PRK13635        227 IF  228 (279)
T ss_pred             Hh
Confidence            54

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.2e-44  Score=362.49  Aligned_cols=217  Identities=27%  Similarity=0.378  Sum_probs=181.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|..      +....++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~v~~~~~~------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   70 (228)
T cd03257           2 LEVKNLSVSFPT------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-----TSGSIIFDGKDLL   70 (228)
T ss_pred             eEEEeeeEeccC------CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcc
Confidence            688999998721      00113699999999999999999999999999999999999886     6899999999864


Q ss_pred             ch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-HHHHHHHcCCc-cccCcccCCCCh
Q psy12625        101 DH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESK-VDSIADSLSIS-TCKNTLTKHLSG  171 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~~~~LSg  171 (612)
                      ..     ..+++.++|++|++  .+++.+||+||+.+....... . ...+..+. ++++++.+|+. +..++.+.+|||
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  148 (228)
T cd03257          71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSG  148 (228)
T ss_pred             ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCH
Confidence            32     24567899999998  467789999999876543211 1 11222222 36889999995 678999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|+++..
T Consensus       149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence            9999999999999999999999999999999999999999999875 899999999986 57779999999999999875


Q ss_pred             c
Q psy12625        251 G  251 (612)
Q Consensus       251 G  251 (612)
                      |
T Consensus       228 g  228 (228)
T cd03257         228 G  228 (228)
T ss_pred             C
Confidence            4

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-44  Score=372.17  Aligned_cols=223  Identities=26%  Similarity=0.388  Sum_probs=189.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...     +...+++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~~~~~-----~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i   71 (280)
T PRK13649          2 GINLQNVSYTYQAG-----TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-----TQGSVRVDDTLI   71 (280)
T ss_pred             eEEEEEEEEEcCCC-----CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEc
Confidence            58899999988310     00124699999999999999999999999999999999999886     689999999986


Q ss_pred             cc------hHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QD------HRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ..      ...+++.++|++|++  .+++ .||+||+.+.....   ..+.++.+++++++++.+||. +..++++.+||
T Consensus        72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  147 (280)
T PRK13649         72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELS  147 (280)
T ss_pred             cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence            42      134567899999996  4555 69999998764332   123444556788999999997 46799999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus       148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~  226 (280)
T PRK13649        148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS  226 (280)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999877899999999976 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       227 g~~~~~~  233 (280)
T PRK13649        227 GKPKDIF  233 (280)
T ss_pred             CCHHHHh
Confidence            9887653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-44  Score=368.76  Aligned_cols=221  Identities=22%  Similarity=0.379  Sum_probs=190.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         5 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   69 (255)
T PRK11300          5 LLSVSGLMMRF----------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-----TGGTILLRGQHI   69 (255)
T ss_pred             eEEEeeEEEEE----------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----CcceEEECCEEC
Confidence            68999999987          456799999999999999999999999999999999999886     689999999986


Q ss_pred             cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccC----------CCC--CHHHHHHHHHHHHHHcCCccccCc
Q psy12625        100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG----------NQY--SRKAKESKVDSIADSLSISTCKNT  164 (612)
Q Consensus       100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~  164 (612)
                      ...  .. .+..++|++|++.+++.+||+||+.++......          ...  ...+..++++++++.+|+.+..++
T Consensus        70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  149 (255)
T PRK11300         70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR  149 (255)
T ss_pred             CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence            432  22 345699999999999999999999986431100          000  112234568889999999999999


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeec
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ++++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|+
T Consensus       150 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~  228 (255)
T PRK11300        150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN  228 (255)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999999875 899999999976 6788999999999


Q ss_pred             CCeEEEecCccCh
Q psy12625        244 EGYCTYQGTVPGL  256 (612)
Q Consensus       244 ~G~iv~~G~~~~~  256 (612)
                      +|++++.|++++.
T Consensus       229 ~g~i~~~~~~~~~  241 (255)
T PRK11300        229 QGTPLANGTPEEI  241 (255)
T ss_pred             CCeEEecCCHHHH
Confidence            9999999987765

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2e-45  Score=354.26  Aligned_cols=220  Identities=26%  Similarity=0.403  Sum_probs=207.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|++++|++++          +++.+++|+||++++|++.+++|||||||||.+|+|.|+++|     ++|+|.++|.++
T Consensus         2 ~L~ie~vtK~F----------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-----~~G~I~~~g~~~   66 (300)
T COG4152           2 ALEIEGVTKSF----------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----TEGEITWNGGPL   66 (300)
T ss_pred             ceEEecchhcc----------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-----cCceEEEcCcch
Confidence            58899999987          889999999999999999999999999999999999999986     689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .  ...+.+|||.|.+..+++.+||.|.+.|.+.++   .+++++.+++++.+|+++++.....+++.+||-|++|++.+
T Consensus        67 ~--~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQf  141 (300)
T COG4152          67 S--QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF  141 (300)
T ss_pred             h--hhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHH
Confidence            4  345678999999999999999999999999987   57888999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhH
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY  259 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~  259 (612)
                      ..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|.+. .+.++||++++|++|+.|.+|+.+++...
T Consensus       142 isaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~  220 (300)
T COG4152         142 ISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRS  220 (300)
T ss_pred             HHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHh
Confidence            99999999999999999999999999999999999999999999999986 68999999999999999999999988764


Q ss_pred             H
Q psy12625        260 L  260 (612)
Q Consensus       260 f  260 (612)
                      |
T Consensus       221 ~  221 (300)
T COG4152         221 F  221 (300)
T ss_pred             c
Confidence            4

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.4e-44  Score=365.34  Aligned_cols=220  Identities=26%  Similarity=0.402  Sum_probs=190.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~   66 (242)
T TIGR03411         2 ILYLEGLSVSF----------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-----DEGSVLFGGTDL   66 (242)
T ss_pred             eEEEEeeEEEc----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCeec
Confidence            47899999987          345799999999999999999999999999999999999886     689999999886


Q ss_pred             cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhccC--C---CCCHHHHHHHHHHHHHHcCCccccCcccCCCCh
Q psy12625        100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--N---QYSRKAKESKVDSIADSLSISTCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg  171 (612)
                      ...  . ..++.++|++|++.+++.+||+||+.+.......  .   ....++.+++++++++.+|+++..++.+++|||
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~  146 (242)
T TIGR03411        67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH  146 (242)
T ss_pred             CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence            432  2 2345799999999999999999999886432100  0   011233456789999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++..|
T Consensus       147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~  224 (242)
T TIGR03411       147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG  224 (242)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence            999999999999999999999999999999999999999999976 689999999976 678899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       225 ~~~~~  229 (242)
T TIGR03411       225 SLDQV  229 (242)
T ss_pred             CHHHH
Confidence            87654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.9e-45  Score=369.43  Aligned_cols=220  Identities=27%  Similarity=0.415  Sum_probs=191.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   66 (255)
T PRK11231          2 TLRTENLTVGY----------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----QSGTVFLGDKPI   66 (255)
T ss_pred             EEEEEeEEEEE----------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CCcEEEECCEEh
Confidence            58899999987          456799999999999999999999999999999999999876     689999999886


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..  ....++.++|++|++.+++.+|+.||+.++...  ... ...+...+++++++++.+|+.+..++.+.+|||||||
T Consensus        67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  145 (255)
T PRK11231         67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW-GRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQ  145 (255)
T ss_pred             HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc-cCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHH
Confidence            43  234566799999999888889999999875311  100 1112334567889999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|++++
T Consensus       146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  224 (255)
T PRK11231        146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEE  224 (255)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHH
Confidence            999999999999999999999999999999999999999878999999999986 6789999999999999999998776


Q ss_pred             h
Q psy12625        256 L  256 (612)
Q Consensus       256 ~  256 (612)
                      .
T Consensus       225 ~  225 (255)
T PRK11231        225 V  225 (255)
T ss_pred             h
Confidence            5

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.4e-44  Score=360.32  Aligned_cols=212  Identities=26%  Similarity=0.365  Sum_probs=181.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..      +.+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~v~~~~~~------~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~   70 (221)
T TIGR02211         2 LKCENLGKRYQE------GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----TSGEVLFNGQSLS   70 (221)
T ss_pred             EEEEeeeEEccC------CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEhh
Confidence            678999998731      11125699999999999999999999999999999999999886     6899999999864


Q ss_pred             ch--H---hhc-cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        101 DH--R---MLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       101 ~~--~---~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      +.  .   .++ +.++|++|++.+++.+||+||+.+....+   .....+.++++.++++.+|+++..++.+++||||||
T Consensus        71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  147 (221)
T TIGR02211        71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER  147 (221)
T ss_pred             hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            31  1   123 67999999999999999999998865432   122334456788999999999989999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||+. .+ ..+|++++|++|+++
T Consensus       148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence            999999999999999999999999999999999999999986 4899999999986 45 458999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-44  Score=367.36  Aligned_cols=208  Identities=25%  Similarity=0.389  Sum_probs=186.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|.+
T Consensus        11 ~~l~i~~l~~~~----------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~   75 (257)
T PRK11247         11 TPLLLNAVSKRY----------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-----SAGELLAGTAP   75 (257)
T ss_pred             CcEEEEEEEEEE----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEE
Confidence            358999999988          456799999999999999999999999999999999999886     68999999987


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      +   ..+++.++|++|++.+++.+||+||+.+...     .    ..+++++++++.+||.+..++++.+||||||||++
T Consensus        76 ~---~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~  143 (257)
T PRK11247         76 L---AEAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVA  143 (257)
T ss_pred             H---HHhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence            4   2456789999999999998999999987421     0    12456789999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+.++||++++|++|++++.|+.+
T Consensus       144 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence            99999999999999999999999999999999999965 5899999999986 577899999999999999988764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.3e-44  Score=358.10  Aligned_cols=210  Identities=25%  Similarity=0.441  Sum_probs=181.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++.  .|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         1 i~~~~l~~~~----------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~   63 (211)
T cd03298           1 VRLDKIRFSY----------GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-----QSGRVLINGVDVT   63 (211)
T ss_pred             CEEEeEEEEe----------CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEcC
Confidence            4689999987          2233  399999999999999999999999999999999886     6899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|++||+.+......  .. .+..+++++++++.+|+.+..++++.+||||||||++||
T Consensus        64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia  140 (211)
T cd03298          64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA  140 (211)
T ss_pred             cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence            433345789999999999999999999987543211  11 123456789999999999989999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|
T Consensus       141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence            999999999999999999999999999999999986 5899999999976 577899999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-44  Score=369.32  Aligned_cols=219  Identities=32%  Similarity=0.441  Sum_probs=190.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|.         +.+.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~~   67 (275)
T PRK13639          2 LETRDLKYSYP---------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----TSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEEEEEeC---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEECc
Confidence            78999999872         235699999999999999999999999999999999999886     5899999999863


Q ss_pred             c----hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 D----HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~----~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      .    ....++.++|++|++. .+...||.||+.+.....   ...+++.++++.++++.+||.+..++++++|||||||
T Consensus        68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q  144 (275)
T PRK13639         68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKK  144 (275)
T ss_pred             cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHH
Confidence            1    1235678999999963 333479999998764321   2334455667899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|++++
T Consensus       145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  223 (275)
T PRK13639        145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKE  223 (275)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999999999999999999999999877999999999976 5778999999999999999999887


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       224 ~~  225 (275)
T PRK13639        224 VF  225 (275)
T ss_pred             Hh
Confidence            64

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=8.8e-45  Score=359.86  Aligned_cols=209  Identities=27%  Similarity=0.444  Sum_probs=177.8

Q ss_pred             EEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch
Q psy12625         23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH  102 (612)
Q Consensus        23 ~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~  102 (612)
                      ++||+++|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.  
T Consensus         2 ~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~--   64 (213)
T cd03235           2 VEDLTVSY----------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----TSGSIRVFGKPLE--   64 (213)
T ss_pred             cccceeEE----------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCccHH--
Confidence            57888877          346799999999999999999999999999999999999886     6899999998753  


Q ss_pred             HhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        103 RMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       103 ~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                       ..++.++|++|++.+.  ..+||+||+.+....... ....++..+++++++++.+|+++..++++++||||||||++|
T Consensus        65 -~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  143 (213)
T cd03235          65 -KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLL  143 (213)
T ss_pred             -HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHH
Confidence             3567899999998763  338999999875432110 001123345678999999999988999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++| +++.|
T Consensus       144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence            99999999999999999999999999999999999878899999999976 578899999999886 55544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-44  Score=365.19  Aligned_cols=228  Identities=25%  Similarity=0.369  Sum_probs=197.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+..|..      ..+..++++||||++++||++||+|.|||||||+.++|.|++++......+|+|.++|+++.
T Consensus         2 L~v~nL~v~f~~------~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~   75 (316)
T COG0444           2 LEVKNLSVSFPT------DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL   75 (316)
T ss_pred             ceEeeeEEEEec------CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence            689999999854      22356799999999999999999999999999999999999973223347899999999864


Q ss_pred             ch--H---hhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625        101 DH--R---MLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSIST---CKNTLTKH  168 (612)
Q Consensus       101 ~~--~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~~~~  168 (612)
                      ..  +   .+| +.|+||||++  .+.|.+||.+.+.-......  .. .+++.++++.++|+.+||.+   ..+.++.+
T Consensus        76 ~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe  153 (316)
T COG0444          76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHE  153 (316)
T ss_pred             cCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence            32  2   233 5899999996  68899999998876655422  22 35667889999999999986   56899999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|+++|++|||.. -+.++||||+||..|++
T Consensus       154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i  232 (316)
T COG0444         154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI  232 (316)
T ss_pred             cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence            999999999999999999999999999999999999999999999987 7999999999986 68999999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      |+.|+++++.
T Consensus       233 VE~g~~~~i~  242 (316)
T COG0444         233 VEEGPVEEIF  242 (316)
T ss_pred             EEeCCHHHHh
Confidence            9999998764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-44  Score=377.35  Aligned_cols=228  Identities=22%  Similarity=0.271  Sum_probs=193.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..      +.+...+|+||||++++||+++|+||||||||||+++|+|+++|. +.+.+|+|.++|+++
T Consensus         3 ~L~v~~l~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i   75 (326)
T PRK11022          3 LLNVDKLSVHFGD------ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDL   75 (326)
T ss_pred             eEEEeCeEEEECC------CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEEC
Confidence            5899999999832      112256999999999999999999999999999999999998742 224689999999987


Q ss_pred             cch--Hh---h-ccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625        100 QDH--RM---L-RKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKH  168 (612)
Q Consensus       100 ~~~--~~---~-~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~  168 (612)
                      .+.  +.   + ++.++||+|++  .+.|.+|+.+++........  ...+++.++++.++++.+||.+   ..++++++
T Consensus        76 ~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~  153 (326)
T PRK11022         76 QRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQ  153 (326)
T ss_pred             CcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence            432  22   2 24799999998  57889999998876543321  2344556778999999999974   46889999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||||||||+|||||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||.. .+.+++|+|++|++|++
T Consensus       154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~i  232 (326)
T PRK11022        154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQV  232 (326)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999987 5999999999986 57789999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      ++.|+++++.
T Consensus       233 ve~g~~~~~~  242 (326)
T PRK11022        233 VETGKAHDIF  242 (326)
T ss_pred             EEECCHHHHh
Confidence            9999987764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-44  Score=369.62  Aligned_cols=222  Identities=28%  Similarity=0.390  Sum_probs=192.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|.        .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+
T Consensus         5 ~~~l~~~nl~~~~~--------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~   71 (271)
T PRK13632          5 SVMIKVENVSFSYP--------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----QSGEIKIDGI   71 (271)
T ss_pred             ceEEEEEeEEEEcC--------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCE
Confidence            44799999999872        1346799999999999999999999999999999999999886     6899999999


Q ss_pred             eccch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625         98 RLQDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ++...  ..+++.++|++|++. .++.+||+||+.+.....   ....++.+++++++++.+||.+..++.+.+||||||
T Consensus        72 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  148 (271)
T PRK13632         72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQK  148 (271)
T ss_pred             ecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence            87432  346778999999974 567789999998865332   223444556789999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ ++|||+++|++. .+ ..||++++|++|+++..|++
T Consensus       149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~  226 (271)
T PRK13632        149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKP  226 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCH
Confidence            9999999999999999999999999999999999999999876 599999999986 45 47999999999999999987


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       227 ~~~~  230 (271)
T PRK13632        227 KEIL  230 (271)
T ss_pred             HHHh
Confidence            7653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-44  Score=369.40  Aligned_cols=221  Identities=25%  Similarity=0.415  Sum_probs=191.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus        11 ~l~i~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   75 (265)
T PRK10575         11 TFALRNVSFRV----------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----SEGEILLDAQPL   75 (265)
T ss_pred             eEEEeeEEEEE----------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCEeh
Confidence            69999999987          346799999999999999999999999999999999999886     689999999886


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ...+++.++|++|++.+++.+|+.||+.+....... ....+...+++++++++.+|+.+..++++++||||||||
T Consensus        76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  155 (265)
T PRK10575         76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQR  155 (265)
T ss_pred             hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHH
Confidence            42  234567899999998888889999999875321100 001122345678899999999988999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++..|++++
T Consensus       156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~  234 (265)
T PRK10575        156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE  234 (265)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence            99999999999999999999999999999999999999874 899999999986 6788999999999999999998765


Q ss_pred             h
Q psy12625        256 L  256 (612)
Q Consensus       256 ~  256 (612)
                      .
T Consensus       235 ~  235 (265)
T PRK10575        235 L  235 (265)
T ss_pred             h
Confidence            5

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-44  Score=369.46  Aligned_cols=220  Identities=29%  Similarity=0.450  Sum_probs=191.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|++++|.         +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   68 (277)
T PRK13652          3 LIETRDLCYSYS---------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----TSGSVLIRGEPI   68 (277)
T ss_pred             eEEEEEEEEEeC---------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            488999999872         134699999999999999999999999999999999999886     689999999986


Q ss_pred             cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ....++.++|++|++. .+...||.||+.+.....   ...++..+++++++++.+||.+..++.+.+||||||||
T Consensus        69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr  145 (277)
T PRK13652         69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR  145 (277)
T ss_pred             CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence            43  2345678999999974 333589999998765321   23444556678999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus       146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~  224 (277)
T PRK13652        146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEE  224 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHH
Confidence            99999999999999999999999999999999999999875 899999999986 6778999999999999999999887


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      ..
T Consensus       225 ~~  226 (277)
T PRK13652        225 IF  226 (277)
T ss_pred             Hh
Confidence            64

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=2.7e-44  Score=368.21  Aligned_cols=229  Identities=22%  Similarity=0.354  Sum_probs=191.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...... ...+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~~~~~~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   75 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLF-GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----AQGTVSFRGQDL   75 (265)
T ss_pred             eEEEEeEEEEeccCccc-cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEc
Confidence            48899999988320000 001246799999999999999999999999999999999999886     689999999986


Q ss_pred             cch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625        100 QDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg  171 (612)
                      ...     ..+++.++|++|++  .+++.+||+||+.+......  .......+++++++++.+|+. +..++.+.+|||
T Consensus        76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg  153 (265)
T TIGR02769        76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSG  153 (265)
T ss_pred             cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence            432     12467899999996  46678999999987543211  123334556789999999996 678999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+.++||++++|++|++++.
T Consensus       154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEE
Confidence            9999999999999999999999999999999999999999999874 899999999976 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       233 g~~~~~~  239 (265)
T TIGR02769       233 CDVAQLL  239 (265)
T ss_pred             CCHHHHc
Confidence            9887654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-44  Score=366.24  Aligned_cols=231  Identities=26%  Similarity=0.343  Sum_probs=195.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|..        ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         7 ~l~i~~l~~~~~~--------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~~   73 (269)
T PRK13648          7 IIVFKNVSFQYQS--------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----KSGEIFYNNQAI   73 (269)
T ss_pred             eEEEEEEEEEcCC--------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            6899999998721        224699999999999999999999999999999999999886     689999999986


Q ss_pred             cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ....++.++|++|++. +++..|+.+|+.+.....   ....++..++++++++.+|+.+..++++.+||||||||
T Consensus        74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  150 (269)
T PRK13648         74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQR  150 (269)
T ss_pred             CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHH
Confidence            43  2346778999999974 677789999998864322   12334445678899999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+. .+|++++|++|++++.|++++
T Consensus       151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~  228 (269)
T PRK13648        151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTE  228 (269)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999999864 899999999986 455 499999999999999999876


Q ss_pred             hhh---HHhhcCCCCC
Q psy12625        256 LVP---YLSDFGYQCP  268 (612)
Q Consensus       256 ~~~---~f~~~g~~~p  268 (612)
                      ..+   .+...|.++|
T Consensus       229 ~~~~~~~~~~~~~~~~  244 (269)
T PRK13648        229 IFDHAEELTRIGLDLP  244 (269)
T ss_pred             HhcCHHHHHhcCCCCC
Confidence            533   3344454443

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=4.2e-44  Score=361.97  Aligned_cols=220  Identities=24%  Similarity=0.257  Sum_probs=186.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR   98 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~   98 (612)
                      |+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.  +|     .+|+|.++|++
T Consensus         1 l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----~~G~i~~~g~~   65 (243)
T TIGR01978         1 LKIKDLHVSV----------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----TSGTILFKGQD   65 (243)
T ss_pred             CeEeeEEEEE----------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----CcceEEECCEe
Confidence            4689999987          3467999999999999999999999999999999999995  33     68999999998


Q ss_pred             ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccC--C--CCCHHHHHHHHHHHHHHcCCc-cccCcccC-CC
Q psy12625         99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLG--N--QYSRKAKESKVDSIADSLSIS-TCKNTLTK-HL  169 (612)
Q Consensus        99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~L  169 (612)
                      +...  .. .+..++|++|++.+++.+|++|++.+.......  .  ..+..+..++++++++.+||. +..++.+. +|
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  145 (243)
T TIGR01978        66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGF  145 (243)
T ss_pred             cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCc
Confidence            6432  22 234599999999999999999999876432211  0  112233456789999999997 46788887 59


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv  248 (612)
                      |||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++||++ .+... ||++++|++|+++
T Consensus       146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~  224 (243)
T TIGR01978       146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIV  224 (243)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEE
Confidence            999999999999999999999999999999999999999999999888899999999986 56677 8999999999999


Q ss_pred             EecCccCh
Q psy12625        249 YQGTVPGL  256 (612)
Q Consensus       249 ~~G~~~~~  256 (612)
                      +.|++++.
T Consensus       225 ~~g~~~~~  232 (243)
T TIGR01978       225 KSGDVELA  232 (243)
T ss_pred             EecCHHHh
Confidence            99988743

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-44  Score=364.97  Aligned_cols=227  Identities=19%  Similarity=0.299  Sum_probs=191.9

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      +.+...|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.+
T Consensus         8 ~~~~~~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~   77 (260)
T PRK10744          8 ATAPSKIQVRNLNFYY----------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL   77 (260)
T ss_pred             cCCCceEEEEEEEEEe----------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence            3455679999999988          345799999999999999999999999999999999999862111136899999


Q ss_pred             CCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCccc
Q psy12625         95 NETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLT  166 (612)
Q Consensus        95 ~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~  166 (612)
                      +|+++..    ...+++.++|++|++.+++ .||+||+.+......  ..+.++.+++++++++.+|+.    +..++.+
T Consensus        78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  154 (260)
T PRK10744         78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG  154 (260)
T ss_pred             CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence            9998642    2345778999999998887 899999987653321  233444556789999999984    4578889


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+
T Consensus       155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~  232 (260)
T PRK10744        155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGE  232 (260)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999964 789999999976 5778999999999999


Q ss_pred             EEEecCccCh
Q psy12625        247 CTYQGTVPGL  256 (612)
Q Consensus       247 iv~~G~~~~~  256 (612)
                      ++..|+++++
T Consensus       233 i~~~g~~~~~  242 (260)
T PRK10744        233 LIEFGNTDTI  242 (260)
T ss_pred             EEEeCCHHHH
Confidence            9999987765

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=3.6e-44  Score=366.77  Aligned_cols=224  Identities=25%  Similarity=0.370  Sum_probs=191.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.  ...+|+|.++|+++
T Consensus         4 ~l~~~nl~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--~~~~G~i~~~g~~~   71 (262)
T PRK09984          4 IIRVEKLAKTF----------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD--KSAGSHIELLGRTV   71 (262)
T ss_pred             EEEEeeEEEEe----------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCCceEEEECCEec
Confidence            58999999987          4567999999999999999999999999999999999998863  12469999999886


Q ss_pred             cc-------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-----CCCHHHHHHHHHHHHHHcCCccccCcccC
Q psy12625        100 QD-------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-----QYSRKAKESKVDSIADSLSISTCKNTLTK  167 (612)
Q Consensus       100 ~~-------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~  167 (612)
                      ..       ....++.++|++|++.+++.+||+||+.+......+.     ....++.+++++++++.+|+.+..++.++
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  151 (262)
T PRK09984         72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS  151 (262)
T ss_pred             ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence            32       1234678999999999999999999998754211000     01123345678999999999988999999


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      +||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+.||++++|++|+
T Consensus       152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~  230 (262)
T PRK09984        152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGH  230 (262)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            9999999999999999999999999999999999999999999999986 5899999999986 5788999999999999


Q ss_pred             EEEecCccCh
Q psy12625        247 CTYQGTVPGL  256 (612)
Q Consensus       247 iv~~G~~~~~  256 (612)
                      +++.|++++.
T Consensus       231 i~~~g~~~~~  240 (262)
T PRK09984        231 VFYDGSSQQF  240 (262)
T ss_pred             EEEeCCHHHh
Confidence            9999987653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-44  Score=364.19  Aligned_cols=223  Identities=17%  Similarity=0.268  Sum_probs=190.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|++++|          +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|+++
T Consensus         4 ~l~i~~v~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~   73 (258)
T PRK14241          4 RIDVKDLNIYY----------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL   73 (258)
T ss_pred             cEEEeeEEEEE----------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence            58899999988          34579999999999999999999999999999999999987421113689999999886


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++.+||+||+.+......  ..++++.+++++++++.+|+.    +..++.+.+|||
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (258)
T PRK14241         74 YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSG  151 (258)
T ss_pred             cccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence            32    23456789999999999999999999988654321  112344556788999999984    467888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------CC
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------EG  245 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G  245 (612)
                      ||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+      +|
T Consensus       152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g  229 (258)
T PRK14241        152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPG  229 (258)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCc
Confidence            999999999999999999999999999999999999999999964 689999999976 5788999999996      79


Q ss_pred             eEEEecCccCh
Q psy12625        246 YCTYQGTVPGL  256 (612)
Q Consensus       246 ~iv~~G~~~~~  256 (612)
                      ++++.|++++.
T Consensus       230 ~i~~~~~~~~~  240 (258)
T PRK14241        230 RLVEIDDTEKI  240 (258)
T ss_pred             eEEecCCHHHH
Confidence            99999988765

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=368.25  Aligned_cols=223  Identities=24%  Similarity=0.342  Sum_probs=192.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|++
T Consensus         6 ~~l~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~   70 (265)
T PRK10253          6 ARLRGEQLTLGY----------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-----AHGHVWLDGEH   70 (265)
T ss_pred             cEEEEEEEEEEE----------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCcEEEECCEE
Confidence            379999999988          446799999999999999999999999999999999999886     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +..  ....++.++|++|++.+++.+|++||+.+...-..+. ....+..+++++++++.+||.+..++.+.+|||||||
T Consensus        71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q  150 (265)
T PRK10253         71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ  150 (265)
T ss_pred             hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH
Confidence            643  2344568999999999999999999998742111000 0011234567889999999999899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+.++||++++|++|++++.|+++
T Consensus       151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~  229 (265)
T PRK10253        151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPK  229 (265)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999987 4899999999986 688999999999999999999887


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      ++.
T Consensus       230 ~~~  232 (265)
T PRK10253        230 EIV  232 (265)
T ss_pred             HHh
Confidence            653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=6e-44  Score=375.64  Aligned_cols=228  Identities=23%  Similarity=0.310  Sum_probs=194.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|..      +.+...+|+|||+++++||+++|+|+||||||||+++|+|+.+|..  ..+|+|.++|++
T Consensus        11 ~~L~i~~l~~~~~~------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--~~sG~I~~~G~~   82 (330)
T PRK09473         11 ALLDVKDLRVTFST------PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG--RIGGSATFNGRE   82 (330)
T ss_pred             ceEEEeCeEEEEec------CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--CCCeEEEECCEE
Confidence            46999999999842      1234579999999999999999999999999999999999998621  248999999998


Q ss_pred             ccch--H---hhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccC
Q psy12625         99 LQDH--R---MLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTK  167 (612)
Q Consensus        99 ~~~~--~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~  167 (612)
                      +...  .   .+| +.++||+|++  .+.|.+|+.+++........  ..++.+..+++.++++.+||.+   ..++++.
T Consensus        83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~  160 (330)
T PRK09473         83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPH  160 (330)
T ss_pred             CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence            7432  2   223 5799999998  68899999999977654321  2345556678899999999975   3477899


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      +|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+++|++++|++|+
T Consensus       161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~  239 (330)
T PRK09473        161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGR  239 (330)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999874 999999999986 5778999999999999


Q ss_pred             EEEecCccChh
Q psy12625        247 CTYQGTVPGLV  257 (612)
Q Consensus       247 iv~~G~~~~~~  257 (612)
                      +++.|+++++.
T Consensus       240 ive~g~~~~i~  250 (330)
T PRK09473        240 TMEYGNARDVF  250 (330)
T ss_pred             EEEECCHHHHH
Confidence            99999988764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-44  Score=365.62  Aligned_cols=220  Identities=26%  Similarity=0.389  Sum_probs=189.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~   66 (256)
T TIGR03873         2 LRLSRVSWSA----------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-----DAGTVDLAGVDLH   66 (256)
T ss_pred             ceEEeEEEEE----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCCEEEECCEEcc
Confidence            6789999987          446799999999999999999999999999999999999886     5899999998864


Q ss_pred             ch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        101 DH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       101 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..  ...++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+|+.+..++.+.+||||||||+
T Consensus        67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl  146 (256)
T TIGR03873        67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV  146 (256)
T ss_pred             cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence            32  34456799999998888889999999875311000 0111123345788999999999989999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+.||++++|++|+++..|++++.
T Consensus       147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            9999999999999999999999999999999999999877899999999986 67789999999999999999987754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-44  Score=362.91  Aligned_cols=223  Identities=20%  Similarity=0.271  Sum_probs=187.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.++....+.+|+|.++|++
T Consensus         5 ~~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   74 (253)
T PRK14242          5 PKMEARGLSFFY----------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN   74 (253)
T ss_pred             cEEEEeeeEEEE----------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEE
Confidence            358999999988          3457999999999999999999999999999999999986410001368999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LS  170 (612)
                      +..    ....++.++|++|++.+++ .||+||+.+....+.  ....+..+++++++++.+|+.+    ..++.+.+||
T Consensus        75 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  151 (253)
T PRK14242         75 IYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLS  151 (253)
T ss_pred             ccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence            642    1345678999999998888 599999988754321  1123344567889999999853    4678899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|+++..
T Consensus       152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14242        152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV  229 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999964 789999999986 57789999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |+++++
T Consensus       230 g~~~~~  235 (253)
T PRK14242        230 GPTEQI  235 (253)
T ss_pred             CCHHHH
Confidence            987654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.3e-44  Score=361.02  Aligned_cols=214  Identities=26%  Similarity=0.361  Sum_probs=186.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (230)
T TIGR03410         1 LEVSNLNVYY----------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-----KSGSIRLDGEDIT   65 (230)
T ss_pred             CEEEeEEEEe----------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEECC
Confidence            4689999987          446799999999999999999999999999999999999886     6899999998864


Q ss_pred             ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhhH
Q psy12625        101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqR  176 (612)
                      ..   ...++.++|++|++.+++.+|++||+.+.....   ...   .++.++++++.++ +.+..++.+.+||||||||
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr  139 (230)
T TIGR03410        66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQ  139 (230)
T ss_pred             CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHH
Confidence            32   223567999999999999999999998865432   111   2334577788887 6777899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|++++
T Consensus       140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~  218 (230)
T TIGR03410       140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE  218 (230)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999874 899999999976 6778999999999999999998876


Q ss_pred             h
Q psy12625        256 L  256 (612)
Q Consensus       256 ~  256 (612)
                      +
T Consensus       219 ~  219 (230)
T TIGR03410       219 L  219 (230)
T ss_pred             c
Confidence            6

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-44  Score=365.49  Aligned_cols=225  Identities=20%  Similarity=0.268  Sum_probs=190.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||++.|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|+
T Consensus        17 ~~~l~~~nl~~~~----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~   86 (267)
T PRK14235         17 EIKMRARDVSVFY----------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE   86 (267)
T ss_pred             CceEEEEeEEEEE----------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence            3479999999988          446799999999999999999999999999999999999874211236899999999


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.+++. ||.||+.+....+. ...++.+.+++++++++.+|+.+    ..++.+.+|
T Consensus        87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  164 (267)
T PRK14235         87 DIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL  164 (267)
T ss_pred             ECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence            8642    23456789999999988874 99999988754321 01123334567889999999964    467889999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++.
T Consensus       165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~  242 (267)
T PRK14235        165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVE  242 (267)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999975 689999999976 5778999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|+++++
T Consensus       243 ~g~~~~~  249 (267)
T PRK14235        243 VGDTEKM  249 (267)
T ss_pred             eCCHHHH
Confidence            9987655

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.9e-44  Score=382.26  Aligned_cols=228  Identities=21%  Similarity=0.304  Sum_probs=195.4

Q ss_pred             EEEEeEEEEEEeecc--------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC
Q psy12625         21 LLFQDISYSALYYDT--------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE   86 (612)
Q Consensus        21 l~~~~ls~~~~~~~~--------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~   86 (612)
                      |+++||.+-+-..+.              ..++++...+|+|+||++++||+++|+||||||||||+++|+|+++|    
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p----   76 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV----   76 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----
Confidence            467888877643220              01234567799999999999999999999999999999999999986    


Q ss_pred             CceeEEEECCE----eccc--hH---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc
Q psy12625         87 TNSGYIEINET----RLQD--HR---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL  156 (612)
Q Consensus        87 ~~~G~I~~~g~----~~~~--~~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l  156 (612)
                       .+|+|.++|+    ++..  ..   .. ++.++||+|++.+++.+||+||+.++....   ..++.+.+++++++++.+
T Consensus        77 -~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~v  152 (382)
T TIGR03415        77 -SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELV  152 (382)
T ss_pred             -CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHc
Confidence             6899999996    3321  11   22 358999999999999999999999876443   234556677899999999


Q ss_pred             CCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhc
Q psy12625        157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNM  235 (612)
Q Consensus       157 gL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~  235 (612)
                      ||++..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.++
T Consensus       153 gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l  231 (382)
T TIGR03415       153 GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKI  231 (382)
T ss_pred             CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999874 999999999976 67899


Q ss_pred             ccceeeecCCeEEEecCccChh
Q psy12625        236 ADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       236 ~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +|++++|++|+++..|+++++.
T Consensus       232 ~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       232 GNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             CCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999988764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=4.9e-44  Score=359.26  Aligned_cols=217  Identities=26%  Similarity=0.408  Sum_probs=191.4

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++++          +.+.+++|+|+++++||+++|+||||||||||+++|+|..+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~   65 (232)
T cd03300           1 IELENVSKFY----------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-----TSGEILLDGKDIT   65 (232)
T ss_pred             CEEEeEEEEe----------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcC
Confidence            4689999987          446799999999999999999999999999999999999986     5799999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|++||+.+.....   .......+++++++++.+|+.+..++.+.+||||||||++||
T Consensus        66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la  142 (232)
T cd03300          66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA  142 (232)
T ss_pred             cCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            43334678999999999999999999998865443   123344456788999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+.++.
T Consensus       143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence            9999999999999999999999999999999999874 899999999975 57889999999999999999876554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-44  Score=368.52  Aligned_cols=224  Identities=25%  Similarity=0.340  Sum_probs=192.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|..        ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|..  ..+|+|.++|+++
T Consensus         5 ~l~i~~l~~~~~~--------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~--g~~G~i~i~g~~~   74 (282)
T PRK13640          5 IVEFKHVSFTYPD--------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD--NPNSKITVDGITL   74 (282)
T ss_pred             eEEEEEEEEEcCC--------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC--CCCcEEEECCEEC
Confidence            6899999998721        23569999999999999999999999999999999999998631  1249999999987


Q ss_pred             cch--HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...  ...++.+||++|++. .++..||+||+.+.....   ..++++.+++++++++.+||.+..++++.+||||||||
T Consensus        75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr  151 (282)
T PRK13640         75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR  151 (282)
T ss_pred             CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence            432  345678999999974 667799999998764322   23455566789999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..||++++|++|++++.|++++
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~  229 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVE  229 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999874 899999999986 45 5799999999999999999887


Q ss_pred             hhh
Q psy12625        256 LVP  258 (612)
Q Consensus       256 ~~~  258 (612)
                      +..
T Consensus       230 ~~~  232 (282)
T PRK13640        230 IFS  232 (282)
T ss_pred             Hhc
Confidence            643

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-44  Score=360.30  Aligned_cols=216  Identities=26%  Similarity=0.414  Sum_probs=186.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          +++.  .|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~----------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   64 (232)
T PRK10771          2 LKLTDITWLY----------HHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-----ASGSLTLNGQDHT   64 (232)
T ss_pred             eEEEEEEEEE----------CCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCeecC
Confidence            7899999988          2222  389999999999999999999999999999999886     6899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|+.||+.+......  .. .+..+++++++++.+|+++..++++.+||||||||++||
T Consensus        65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  141 (232)
T PRK10771         65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA  141 (232)
T ss_pred             cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence            432235679999999999999999999987532111  11 223456789999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |+++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.||++++|++|++++.|++++..
T Consensus       142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999976 4899999999986 577899999999999999999876553

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-45  Score=362.65  Aligned_cols=231  Identities=21%  Similarity=0.278  Sum_probs=204.2

Q ss_pred             eeEEEEeEEEEEEeeccc-------c-------ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC
Q psy12625         19 FNLLFQDISYSALYYDTH-------S-------YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK   84 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~-------~-------~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~   84 (612)
                      ..|+++|+++-+-.....       .       .+.+...-++|+|++++.||+..|||-||||||||+++|.++++|  
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--   80 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--   80 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence            468899999877432210       0       011223468999999999999999999999999999999999987  


Q ss_pred             CCCceeEEEECCEeccch-----Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625         85 TETNSGYIEINETRLQDH-----RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI  158 (612)
Q Consensus        85 ~~~~~G~I~~~g~~~~~~-----~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL  158 (612)
                         ++|+|+++|+++...     .. .|+++++|||+..|+|+.||.||..|+..++   ..+++++++++.++|+.+||
T Consensus        81 ---t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL  154 (386)
T COG4175          81 ---TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGL  154 (386)
T ss_pred             ---CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCc
Confidence               689999999987432     22 3578999999999999999999999998776   57889999999999999999


Q ss_pred             ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhccc
Q psy12625        159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       159 ~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      +.+.++++.+|||||||||.|||||+++|+||++|||+|+|||--+.++-+.|.+|.+ -++||+++|||.+ +.+++.|
T Consensus       155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~  233 (386)
T COG4175         155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGD  233 (386)
T ss_pred             hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccc
Confidence            9999999999999999999999999999999999999999999999999999999976 5899999999986 6899999


Q ss_pred             ceeeecCCeEEEecCccChhh
Q psy12625        238 YLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       238 ~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ||.+|++|+++..|+|+|++.
T Consensus       234 rIaimkdG~ivQ~Gtp~eIl~  254 (386)
T COG4175         234 RIAIMKDGEIVQVGTPEEILL  254 (386)
T ss_pred             eEEEecCCeEEEeCCHHHHHc
Confidence            999999999999999999864

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.8e-44  Score=354.09  Aligned_cols=211  Identities=26%  Similarity=0.443  Sum_probs=183.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++||++.|          +  .+++|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++.
T Consensus         1 ~~~~~l~~~~----------~--~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   63 (213)
T TIGR01277         1 LALDKVRYEY----------E--HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-----ASGSIKVNDQSHT   63 (213)
T ss_pred             CeEEeeeEEe----------C--CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEcc
Confidence            4689999987          2  146899999999999999999999999999999999886     6899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +....++.++|++|++.+++.+|+.||+.+......  . .+...+++++++++.+|+++..++.+.+||||||||++||
T Consensus        64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  140 (213)
T TIGR01277        64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALA  140 (213)
T ss_pred             cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHH
Confidence            433456789999999999999999999987543211  1 1222356788999999999989999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+.+.||++++|++|+++..|+
T Consensus       141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999999999999999999986 4899999999975 5778999999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.5e-44  Score=358.09  Aligned_cols=210  Identities=30%  Similarity=0.471  Sum_probs=186.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.+          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~l~~v~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~~~~~~   65 (223)
T TIGR03740         1 LETKNLSKRF----------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----TSGEIIFDGHPWT   65 (223)
T ss_pred             CEEEeEEEEE----------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEecc
Confidence            4689999887          346799999999999999999999999999999999999886     6899999998854


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .. . ++.++|++|++.+++.+|++||+.+.....   ...    ++++.++++.+|+++..++.+.+||||||||++||
T Consensus        66 ~~-~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la  136 (223)
T TIGR03740        66 RK-D-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA  136 (223)
T ss_pred             cc-c-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence            32 1 357999999999999999999998765432   111    24678899999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ||++.+|++++|||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+.||++++|++|++++.|++.+
T Consensus       137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence            9999999999999999999999999999999999878999999999986 5778999999999999999998753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-44  Score=368.79  Aligned_cols=225  Identities=24%  Similarity=0.306  Sum_probs=191.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|++++|...    .+.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~~~~----~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~i~g~~i   74 (280)
T PRK13633          4 MIKCKNVSYKYESN----EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-----SEGKVYVDGLDT   74 (280)
T ss_pred             eEEEeeeEEEcCCC----CCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEec
Confidence            58999999998320    000135799999999999999999999999999999999999986     689999999987


Q ss_pred             cch---HhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        100 QDH---RMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      .+.   ...++.++|++|++. .+...||.||+.+.....   ..++.+.+++++++++.+||.+..++++++|||||||
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q  151 (280)
T PRK13633         75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ  151 (280)
T ss_pred             cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence            432   345778999999974 223469999998865432   2334555677899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|+++..|+++
T Consensus       152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~  229 (280)
T PRK13633        152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDSGKVVMEGTPK  229 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEECCEEEEecCHH
Confidence            99999999999999999999999999999999999999976 5999999999987 454 49999999999999999988


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++..
T Consensus       230 ~~~~  233 (280)
T PRK13633        230 EIFK  233 (280)
T ss_pred             HHhc
Confidence            7643

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-44  Score=360.35  Aligned_cols=218  Identities=25%  Similarity=0.419  Sum_probs=192.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         1 i~i~~l~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~i~g~~~~   65 (237)
T TIGR00968         1 IEIANISKRF----------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----DSGRIRLNGQDAT   65 (237)
T ss_pred             CEEEEEEEEE----------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEcC
Confidence            4689999987          345799999999999999999999999999999999999876     5899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|+.||+.+....+   ........+.++++++.+++.+..++.+++||||||||++||
T Consensus        66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la  142 (237)
T TIGR00968        66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA  142 (237)
T ss_pred             cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence            43334678999999999999999999998765432   122334456789999999999889999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+.++..
T Consensus       143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999999999999999999999875 899999999986 578899999999999999999877653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-44  Score=362.33  Aligned_cols=213  Identities=29%  Similarity=0.440  Sum_probs=187.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   67 (241)
T PRK14250          3 EIEFKEVSYSS----------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-----TEGSILIDGVDI   67 (241)
T ss_pred             eEEEEeEEEEe----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEh
Confidence            58999999987          446799999999999999999999999999999999999886     689999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR  176 (612)
                      ..  ....++.++|++|++.+++ .||+||+.+....+   .    ..+++++++++.+|+. +..++.+.+||||||||
T Consensus        68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr  139 (241)
T PRK14250         68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQR  139 (241)
T ss_pred             hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence            43  2345678999999998887 69999988753321   1    1235678899999997 57889999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|+++..|++++
T Consensus       140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  218 (241)
T PRK14250        140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD  218 (241)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999987 4999999999986 5788999999999999999998776


Q ss_pred             h
Q psy12625        256 L  256 (612)
Q Consensus       256 ~  256 (612)
                      +
T Consensus       219 ~  219 (241)
T PRK14250        219 F  219 (241)
T ss_pred             H
Confidence            5

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=8.5e-44  Score=356.46  Aligned_cols=215  Identities=25%  Similarity=0.361  Sum_probs=184.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|..      +...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~~~~l~~~~~~------~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~~   74 (228)
T PRK10584          6 IVEVHHLKKSVGQ------GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-----SSGEVSLVGQPL   74 (228)
T ss_pred             eEEEeeeEEEccC------CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCeeEEECCEEc
Confidence            6899999998721      00113599999999999999999999999999999999999886     689999999986


Q ss_pred             cch--H---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH--R---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~--~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ...  .   .. ++.++|++|++.+++.+|+.||+.+....+   .....+.+++++++++.+|+.+..++++.+|||||
T Consensus        75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge  151 (228)
T PRK10584         75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE  151 (228)
T ss_pred             ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence            432  1   12 357999999999999999999998765332   12334456788999999999998999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++||+. .+ +.+|++++|++|++++.
T Consensus       152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence            9999999999999999999999999999999999999999976 4899999999986 45 56999999999998753

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-44  Score=375.12  Aligned_cols=230  Identities=19%  Similarity=0.245  Sum_probs=190.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..      +.+.+.+|+|||++|++||+++|+|+||||||||+++|+|+.+|. ..+.+|+|.++|+++
T Consensus         3 ~L~v~~l~~~y~~------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i   75 (330)
T PRK15093          3 LLDIRNLTIEFKT------SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDL   75 (330)
T ss_pred             eEEEeeeEEEEeC------CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEEC
Confidence            5899999999843      113457999999999999999999999999999999999998742 124689999999987


Q ss_pred             cch--Hh----hccceEEEccCCC--CCCCCCHHHHHHHHHHhc-c-CCC-CCHHHHHHHHHHHHHHcCCcc---ccCcc
Q psy12625        100 QDH--RM----LRKESCYIMQDNL--LQELLTVEESLTVAAHLK-L-GNQ-YSRKAKESKVDSIADSLSIST---CKNTL  165 (612)
Q Consensus       100 ~~~--~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~-~-~~~-~~~~~~~~~v~~~l~~lgL~~---~~~~~  165 (612)
                      .+.  ..    .++.++||+|++.  +.+.+||.+++....... . +.. ....+.++++.++++.+||.+   ..+++
T Consensus        76 ~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~  155 (330)
T PRK15093         76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF  155 (330)
T ss_pred             CcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence            432  21    2357999999985  678899999997643211 0 000 112334567899999999975   45889


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +.+|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|||++|||.. .+.++||++++|++
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~  234 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC  234 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence            999999999999999999999999999999999999999999999999987 4999999999976 67889999999999


Q ss_pred             CeEEEecCccChh
Q psy12625        245 GYCTYQGTVPGLV  257 (612)
Q Consensus       245 G~iv~~G~~~~~~  257 (612)
                      |++++.|+++++.
T Consensus       235 G~ive~g~~~~i~  247 (330)
T PRK15093        235 GQTVETAPSKELV  247 (330)
T ss_pred             CEEEEECCHHHHH
Confidence            9999999887653

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-44  Score=379.88  Aligned_cols=209  Identities=27%  Similarity=0.419  Sum_probs=185.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |++ ||+++|          +++. + |+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~-~l~k~~----------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~~~g~~~~   63 (352)
T PRK11144          2 LEL-NFKQQL----------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-----QKGRIVLNGRVLF   63 (352)
T ss_pred             eEE-EEEEEe----------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence            566 888887          3333 3 89999999999999999999999999999999886     6899999998864


Q ss_pred             c------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        101 D------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       101 ~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      +      ....++.++|++|++.+++.+||+||+.++..         ...+++++++++.+||++..++++++||||||
T Consensus        64 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~  134 (352)
T PRK11144         64 DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEK  134 (352)
T ss_pred             ccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence            3      12346789999999999999999999987532         11345688999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|++
T Consensus       135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~  213 (352)
T PRK11144        135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL  213 (352)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence            9999999999999999999999999999999999999999875 899999999986 68899999999999999999998


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       214 ~~i~  217 (352)
T PRK11144        214 EEVW  217 (352)
T ss_pred             HHHH
Confidence            8764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=360.47  Aligned_cols=221  Identities=20%  Similarity=0.279  Sum_probs=187.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCCCceeEEEEC
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTETNSGYIEIN   95 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~~~~G~I~~~   95 (612)
                      ..|+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+.   +|   .+.+|+|.++
T Consensus         2 ~~l~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~~~~G~i~~~   68 (250)
T PRK14245          2 VKIDARDVNFWY----------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---TRLEGEIRID   68 (250)
T ss_pred             cEEEEEEEEEEE----------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC---CCCceEEEEC
Confidence            468999999987          4467999999999999999999999999999999999973   32   1248999999


Q ss_pred             CEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccC
Q psy12625         96 ETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTK  167 (612)
Q Consensus        96 g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~  167 (612)
                      |+++..    ....++.++|++|++.+++ .|++||+.+....+.  ....+..++.++++++.+|+.+    ..++.+.
T Consensus        69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  145 (250)
T PRK14245         69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAF  145 (250)
T ss_pred             CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcc
Confidence            998643    1345678999999998887 699999988654321  1122334567889999999853    4678899


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      +||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. .+.+.||++++|++|++
T Consensus       146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~  223 (250)
T PRK14245        146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEM  223 (250)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999995 4789999999986 57789999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      ++.|+++++.
T Consensus       224 ~~~~~~~~~~  233 (250)
T PRK14245        224 VEYDDTKKIF  233 (250)
T ss_pred             EEECCHHHHh
Confidence            9999888764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-44  Score=369.17  Aligned_cols=223  Identities=22%  Similarity=0.336  Sum_probs=188.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|...     ....+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~i~nl~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   75 (289)
T PRK13645          6 DIILDNVSYTYAKK-----TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-----ETGQTIVGDYAI   75 (289)
T ss_pred             eEEEEEEEEEeCCC-----CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEEc
Confidence            58999999988210     00013599999999999999999999999999999999999886     689999999886


Q ss_pred             cc-------hHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCC
Q psy12625        100 QD-------HRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHL  169 (612)
Q Consensus       100 ~~-------~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~L  169 (612)
                      ..       ...+++.++|++|++.  +++ .||+||+.+.....   ....++..++++++++.++|. +..++.+++|
T Consensus        76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~L  151 (289)
T PRK13645         76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFEL  151 (289)
T ss_pred             cccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhC
Confidence            31       2345678999999973  343 69999998865321   123344456788999999994 6789999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.++||++++|++|+++
T Consensus       152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~  230 (289)
T PRK13645        152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI  230 (289)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999976 5899999999976 578899999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      +.|++++..
T Consensus       231 ~~g~~~~~~  239 (289)
T PRK13645        231 SIGSPFEIF  239 (289)
T ss_pred             EeCCHHHHh
Confidence            999877653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=363.09  Aligned_cols=228  Identities=22%  Similarity=0.300  Sum_probs=193.7

Q ss_pred             CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      .+.....|+++||++.|          +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.
T Consensus        14 ~~~~~~~l~~~nl~~~~----------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   83 (267)
T PRK14237         14 FPEEEIALSTKDLHVYY----------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL   83 (267)
T ss_pred             cCCCCeEEEEeeEEEEE----------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence            35566689999999987          45679999999999999999999999999999999999986421124689999


Q ss_pred             ECCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcc
Q psy12625         94 INETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTL  165 (612)
Q Consensus        94 ~~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~  165 (612)
                      ++|+++..    ....++.++|++|++.+++ .||+||+.++.... + ...+.+.++++.++++.++|.    +..++.
T Consensus        84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~  160 (267)
T PRK14237         84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKS  160 (267)
T ss_pred             ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCC
Confidence            99998642    1345778999999998887 69999998865332 1 123344556788999999985    456888


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.++||++++|++|
T Consensus       161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G  238 (267)
T PRK14237        161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLG  238 (267)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECC
Confidence            999999999999999999999999999999999999999999999999964 789999999986 578899999999999


Q ss_pred             eEEEecCccCh
Q psy12625        246 YCTYQGTVPGL  256 (612)
Q Consensus       246 ~iv~~G~~~~~  256 (612)
                      ++++.|++++.
T Consensus       239 ~i~~~g~~~~~  249 (267)
T PRK14237        239 DLIEYDKTRNI  249 (267)
T ss_pred             EEEEeCCHHHH
Confidence            99999988765

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-44  Score=330.72  Aligned_cols=214  Identities=26%  Similarity=0.389  Sum_probs=191.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++++++.+..      ..+...||++|++.+++||-++|+|||||||||||-+++|+..|     ++|+|.+.|+++
T Consensus         6 ii~~~~l~ktvg~------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----ssGeV~l~G~~L   74 (228)
T COG4181           6 IIEVHHLSKTVGQ------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----SSGEVRLLGQPL   74 (228)
T ss_pred             eeehhhhhhhhcC------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-----CCceEEEcCcch
Confidence            5888999988733      34567899999999999999999999999999999999999886     689999999987


Q ss_pred             cch-----Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH-----RML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~-----~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      .+.     ..+ .+.+|+|||...+.|++|..||+...+.++-.   +..+..+.+.+.++.+||.+..+.++++|||||
T Consensus        75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGE  151 (228)
T COG4181          75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGE  151 (228)
T ss_pred             hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchH
Confidence            532     223 36899999999999999999999999887632   234456678899999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      +|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|+|.|++||||.  +...|||.+-|.+|+++.
T Consensus       152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence            9999999999999999999999999999999999999999976 6999999999984  578999999999999874

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=8.9e-44  Score=364.74  Aligned_cols=228  Identities=22%  Similarity=0.330  Sum_probs=190.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|..... ..+.+.+++|+|+|+++++||+++|+|||||||||||++|+|+++|     .+|+|.++|.++
T Consensus         4 ~l~~~~l~~~~~~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   77 (267)
T PRK15112          4 LLEVRNLSKTFRYRTG-WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGELLIDDHPL   77 (267)
T ss_pred             eEEEeceEEEecCCCC-cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEC
Confidence            5899999999831000 0001235799999999999999999999999999999999999986     689999999986


Q ss_pred             cch--HhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhh
Q psy12625        100 QDH--RMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer  174 (612)
                      ...  ...++.++|++|++.  +++.+|+.|++.+......  .....+.+++++++++.+||. +..++.+.+||||||
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  155 (267)
T PRK15112         78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQK  155 (267)
T ss_pred             CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence            421  233467999999975  5678899999987654432  123344456789999999994 677889999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+..+||++++|++|++++.|++
T Consensus       156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~  234 (267)
T PRK15112        156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGST  234 (267)
T ss_pred             HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCH
Confidence            999999999999999999999999999999999999999987 4899999999986 67889999999999999999887


Q ss_pred             cCh
Q psy12625        254 PGL  256 (612)
Q Consensus       254 ~~~  256 (612)
                      ++.
T Consensus       235 ~~~  237 (267)
T PRK15112        235 ADV  237 (267)
T ss_pred             HHH
Confidence            654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=359.89  Aligned_cols=223  Identities=21%  Similarity=0.347  Sum_probs=189.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+++|+|.++|+++
T Consensus         4 ~l~~~nl~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i   73 (252)
T PRK14256          4 KVKLEQLNVHF----------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI   73 (252)
T ss_pred             EEEEEEEEEEe----------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence            48999999988          34679999999999999999999999999999999999986210112589999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++.+|++||+.+.....  ......+.+++++++++.+|+.+    ..++.+++|||
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (252)
T PRK14256         74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG  151 (252)
T ss_pred             ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence            42    1345778999999999999999999998764332  11223344567889999999853    45778999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|++|+++..|
T Consensus       152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~  229 (252)
T PRK14256        152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECG  229 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999976 589999999976 677899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       230 ~~~~~  234 (252)
T PRK14256        230 ETKKI  234 (252)
T ss_pred             CHHHH
Confidence            87765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.1e-43  Score=357.37  Aligned_cols=216  Identities=29%  Similarity=0.436  Sum_probs=189.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++ +|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         1 l~~~~l~~~~----------~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-----~~G~v~i~g~~~~   64 (235)
T cd03299           1 LKVENLSKDW----------KEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----DSGKILLNGKDIT   64 (235)
T ss_pred             CeeEeEEEEe----------CCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEcC
Confidence            4678999887          333 89999999999999999999999999999999999886     6899999999865


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.++|++|++.+++.+|+.||+.+.....   .....+.++.+.++++.+||.+..++++.+||||||||++||
T Consensus        65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la  141 (235)
T cd03299          65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA  141 (235)
T ss_pred             cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence            43234678999999999999999999998764332   123344556788999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus       142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  217 (235)
T cd03299         142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV  217 (235)
T ss_pred             HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999999999764 999999999986 57889999999999999999987654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-44  Score=339.90  Aligned_cols=222  Identities=25%  Similarity=0.391  Sum_probs=194.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+.+||||+.          ..|.+|++||++++|||+++|+||||||||||||.|+|...|     .+|++.+||.++
T Consensus         1 mi~a~nls~~~----------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-----~~G~v~~~g~~l   65 (259)
T COG4559           1 MIRAENLSYSL----------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-----DSGEVTLNGVPL   65 (259)
T ss_pred             CeeeeeeEEEe----------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-----CCCeEeeCCcCh
Confidence            47889999987          678899999999999999999999999999999999999886     689999999987


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ...  .++.+.-+.+||+..+-...||+|.+.++..-.. ......+.++.+++.|+..++.+.+.+....|||||||||
T Consensus        66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRV  144 (259)
T COG4559          66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV  144 (259)
T ss_pred             hhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHH
Confidence            543  4556778999999887666899999999753221 1111234556689999999999999999999999999999


Q ss_pred             HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        178 SIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       178 ~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      .+||.|+.      ++++|+||||||.||...+..++++.++++++|..|+++.||.+. ...+||||++|++||++..|
T Consensus       145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g  223 (259)
T COG4559         145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASG  223 (259)
T ss_pred             HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecC
Confidence            99999985      455899999999999999999999999999999999999999985 67899999999999999999


Q ss_pred             CccChhh
Q psy12625        252 TVPGLVP  258 (612)
Q Consensus       252 ~~~~~~~  258 (612)
                      +|+++.+
T Consensus       224 ~p~~vlt  230 (259)
T COG4559         224 SPQDVLT  230 (259)
T ss_pred             CHHHhcC
Confidence            9998764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-43  Score=360.78  Aligned_cols=222  Identities=20%  Similarity=0.273  Sum_probs=188.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus        12 ~l~i~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~   81 (259)
T PRK14274         12 VYQINGMNLWY----------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI   81 (259)
T ss_pred             eEEEeeEEEEE----------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence            69999999987          44679999999999999999999999999999999999986310112589999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++. ||+||+.+......  ...+++.+++++++++.+|+.    +..++.+++|||
T Consensus        82 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~  158 (259)
T PRK14274         82 LKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG  158 (259)
T ss_pred             cccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence            42    23456789999999988885 99999987643321  112344456788899999985    346888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.+.||++++|++|+++..|
T Consensus       159 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g  236 (259)
T PRK14274        159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECN  236 (259)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEC
Confidence            999999999999999999999999999999999999999999975 789999999986 678899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      +++++
T Consensus       237 ~~~~~  241 (259)
T PRK14274        237 DTNKM  241 (259)
T ss_pred             CHHHH
Confidence            88765

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-44  Score=378.45  Aligned_cols=210  Identities=27%  Similarity=0.428  Sum_probs=184.9

Q ss_pred             eEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--
Q psy12625         25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--  102 (612)
Q Consensus        25 ~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--  102 (612)
                      ||+++|          +++. + |+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++...  
T Consensus         4 ~l~~~~----------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~~~g~~i~~~~~   66 (354)
T TIGR02142         4 RFSKRL----------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-----DEGEIVLNGRTLFDSRK   66 (354)
T ss_pred             EEEEEE----------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECccCcc
Confidence            777776          3344 4 99999999999999999999999999999999986     689999999986421  


Q ss_pred             ----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        103 ----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       103 ----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                          ...++.++|++|++.+++.+||+||+.++....     ...+.+++++++++.+||.+..++++.+|||||||||+
T Consensus        67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRva  141 (354)
T TIGR02142        67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVA  141 (354)
T ss_pred             ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                234678999999999999999999998865321     12334567899999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. ++..++|++++|++|+++..|+++++.
T Consensus       142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence            999999999999999999999999999999999999875 899999999986 678899999999999999999887654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-43  Score=359.04  Aligned_cols=224  Identities=19%  Similarity=0.285  Sum_probs=189.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|++
T Consensus         3 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~   72 (251)
T PRK14270          3 IKMESKNLNLWY----------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN   72 (251)
T ss_pred             cEEEEEEeEEEE----------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence            468999999987          3467999999999999999999999999999999999998742111368999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ....++.++|++|++.+++ .|++||+.+......  .....+.+++++++++.+|+.    +..++.+.+||
T Consensus        73 i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  149 (251)
T PRK14270         73 IYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLS  149 (251)
T ss_pred             cccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCC
Confidence            642    1245678999999999887 899999988654321  112334456788899999874    45788899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.
T Consensus       150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~  227 (251)
T PRK14270        150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEF  227 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEe
Confidence            9999999999999999999999999999999999999999999976 589999999975 67889999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       228 ~~~~~~~  234 (251)
T PRK14270        228 NKTEKIF  234 (251)
T ss_pred             CCHHHHh
Confidence            9887653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=9.7e-44  Score=357.99  Aligned_cols=205  Identities=28%  Similarity=0.431  Sum_probs=178.8

Q ss_pred             ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEc-cC
Q psy12625         38 YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIM-QD  115 (612)
Q Consensus        38 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~-Q~  115 (612)
                      ++++.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++... ..+++.++|++ |+
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~  103 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----TSGEVRVAGLVPWKRRKKFLRRIGVVFGQK  103 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CceEEEECCEEccccchhhcccEEEEcCCc
Confidence            344667899999999999999999999999999999999999886     689999999875322 34567899998 55


Q ss_pred             CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625        116 NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP  195 (612)
Q Consensus       116 ~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP  195 (612)
                      +.+++.+|++||+.+.....   ....++..++++++++.+|+.+..++++.+||||||||++||++|+.+|++++||||
T Consensus       104 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  180 (236)
T cd03267         104 TQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP  180 (236)
T ss_pred             cccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            67888899999998865442   223344556788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |+|||+.++..+.+.|+++++ .++|||+++|++. .+.++||++++|++|++++.|
T Consensus       181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence            999999999999999999976 4899999999986 578899999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-43  Score=363.07  Aligned_cols=224  Identities=20%  Similarity=0.315  Sum_probs=188.4

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      +...|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|
T Consensus        10 ~~~~l~i~nl~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g   79 (269)
T PRK14259         10 KNIIISLQNVTISY----------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG   79 (269)
T ss_pred             CCceEEEEeEEEEE----------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence            34579999999988          44679999999999999999999999999999999999976311113689999999


Q ss_pred             Eeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCC
Q psy12625         97 TRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKH  168 (612)
Q Consensus        97 ~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~  168 (612)
                      +++..    ...+++.++|++|++.+++ .||+||+.+....+   ... ...+++++++++.+++    ++..++++.+
T Consensus        80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  154 (269)
T PRK14259         80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESGYS  154 (269)
T ss_pred             EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence            88631    2345678999999998888 59999998875432   122 2234567788888876    3457888999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC----
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE----  244 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----  244 (612)
                      ||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++    
T Consensus       155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~  232 (269)
T PRK14259        155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVE  232 (269)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccc
Confidence            999999999999999999999999999999999999999999999964 689999999986 68899999999996    


Q ss_pred             -------CeEEEecCccChh
Q psy12625        245 -------GYCTYQGTVPGLV  257 (612)
Q Consensus       245 -------G~iv~~G~~~~~~  257 (612)
                             |++++.|+++++.
T Consensus       233 ~~~~g~~g~~~~~~~~~~~~  252 (269)
T PRK14259        233 GGSGGKVGYLVEFNETKKIF  252 (269)
T ss_pred             cccccccceEEEeCCHHHHH
Confidence                   6789999887764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=358.97  Aligned_cols=221  Identities=23%  Similarity=0.309  Sum_probs=188.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|.  .+.+|+|.++|+++
T Consensus         2 ~~~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~~~~G~i~~~g~~i   69 (246)
T PRK14269          2 IAKTTNLNLFY----------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--AKIDGLVEIEGKDV   69 (246)
T ss_pred             ceeeeeeEEEE----------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCCceEEEECCEec
Confidence            57899999988          4467999999999999999999999999999999999997531  13689999999987


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChhh
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe  173 (612)
                      .+.  ..+++.++|++|++.+++ .|++||+.+....+. ........+++++++++.+|+.    +..++.+.+|||||
T Consensus        70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~  147 (246)
T PRK14269         70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ  147 (246)
T ss_pred             ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence            532  345778999999998887 699999988654321 0011233456688999999994    45678889999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.+|++++|++|++++.|++
T Consensus       148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~  225 (246)
T PRK14269        148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGES  225 (246)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999865 899999999976 57889999999999999999987


Q ss_pred             cCh
Q psy12625        254 PGL  256 (612)
Q Consensus       254 ~~~  256 (612)
                      ++.
T Consensus       226 ~~~  228 (246)
T PRK14269        226 KEF  228 (246)
T ss_pred             HHH
Confidence            765

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-44  Score=365.23  Aligned_cols=225  Identities=20%  Similarity=0.266  Sum_probs=189.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC---CCCceeEEEECCE
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK---TETNSGYIEINET   97 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---~~~~~G~I~~~g~   97 (612)
                      |+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|..   ....+|+|.++|+
T Consensus         2 l~~~nl~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~   71 (272)
T PRK13547          2 LTADHLHVAR----------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE   71 (272)
T ss_pred             eEEEEEEEEE----------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE
Confidence            7899999987          45679999999999999999999999999999999999988631   0012899999999


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ++..  ...+++.++|++|++..++.+||+||+.+....... ......+..++++++++.+|+.+..++.+.+||||||
T Consensus        72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  151 (272)
T PRK13547         72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL  151 (272)
T ss_pred             EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence            8643  234566799999998766679999999875321100 0111123456788999999999989999999999999


Q ss_pred             hHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625        175 KRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       175 qRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      |||+|||+|+         .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++
T Consensus       152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~  230 (272)
T PRK13547        152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD  230 (272)
T ss_pred             HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence            9999999999         599999999999999999999999999999875 899999999986 57789999999999


Q ss_pred             CeEEEecCccCh
Q psy12625        245 GYCTYQGTVPGL  256 (612)
Q Consensus       245 G~iv~~G~~~~~  256 (612)
                      |++++.|+++++
T Consensus       231 G~i~~~g~~~~~  242 (272)
T PRK13547        231 GAIVAHGAPADV  242 (272)
T ss_pred             CeEEEecCHHHH
Confidence            999999988765

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-45  Score=334.78  Aligned_cols=220  Identities=24%  Similarity=0.369  Sum_probs=198.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+.++|          +...+|++||++.++|+++.|+|.|||||||+|+||.-+.+|     ..|.|.+||+.+
T Consensus         6 ~l~v~dlHK~~----------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-----~~G~I~v~geei   70 (256)
T COG4598           6 ALEVEDLHKRY----------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----SAGSIRVNGEEI   70 (256)
T ss_pred             ceehhHHHhhc----------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-----CCceEEECCeEE
Confidence            57888888877          888999999999999999999999999999999999999886     689999999876


Q ss_pred             cc------------h---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625        100 QD------------H---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT  164 (612)
Q Consensus       100 ~~------------~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  164 (612)
                      .-            .   ..+|.+.++|+|+.++++.+||.||+.-+..--+  ..++.+..++++.+|+.+|+.+..|.
T Consensus        71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~  148 (256)
T COG4598          71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA  148 (256)
T ss_pred             EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence            21            1   2356789999999999999999999865432112  35677888999999999999999999


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ++..|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|++++||... ...+...+|++|++
T Consensus       149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~  227 (256)
T COG4598         149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQ  227 (256)
T ss_pred             CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999976 57889999999999


Q ss_pred             CeEEEecCccChh
Q psy12625        245 GYCTYQGTVPGLV  257 (612)
Q Consensus       245 G~iv~~G~~~~~~  257 (612)
                      |.+-++|+|+++.
T Consensus       228 G~iEE~G~P~qvf  240 (256)
T COG4598         228 GKIEEEGPPEQVF  240 (256)
T ss_pred             ceecccCChHHHh
Confidence            9999999999773

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-43  Score=395.55  Aligned_cols=224  Identities=23%  Similarity=0.312  Sum_probs=195.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|   .+++|+|.++|+++
T Consensus         5 ~l~~~nl~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~   71 (506)
T PRK13549          5 LLEMKNITKTF----------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---GTYEGEIIFEGEEL   71 (506)
T ss_pred             eEEEeeeEEEe----------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCEEC
Confidence            58999999987          456799999999999999999999999999999999999875   12689999999987


Q ss_pred             cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...  . ..++.++||+|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++++++||||||||
T Consensus        72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr  151 (506)
T PRK13549         72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL  151 (506)
T ss_pred             CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence            432  1 2357799999999999999999999886432210112233445678999999999988999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus       152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence            99999999999999999999999999999999999999888999999999976 67889999999999999999998876


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       231 ~  231 (506)
T PRK13549        231 T  231 (506)
T ss_pred             C
Confidence            3

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-43  Score=358.16  Aligned_cols=222  Identities=25%  Similarity=0.316  Sum_probs=186.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~   74 (252)
T PRK14239          5 ILQVSDLSVYY----------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI   74 (252)
T ss_pred             eEEEEeeEEEE----------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence            58999999987          34679999999999999999999999999999999999854110012489999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++ .||+||+.+..... + ...+...+++++++++.+|+.    +..++.+.+|||
T Consensus        75 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  151 (252)
T PRK14239         75 YSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG  151 (252)
T ss_pred             cCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence            32    1345678999999998887 89999998865432 1 112233456678899999874    456888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|
T Consensus       152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g  229 (252)
T PRK14239        152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYN  229 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999965 689999999976 678899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      +++++
T Consensus       230 ~~~~~  234 (252)
T PRK14239        230 DTKQM  234 (252)
T ss_pred             CHHHH
Confidence            88765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-43  Score=357.39  Aligned_cols=222  Identities=19%  Similarity=0.286  Sum_probs=187.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++++|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~   72 (250)
T PRK14240          3 KISVKDLDLFY----------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI   72 (250)
T ss_pred             eEEEEEEEEEE----------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            58899999987          34579999999999999999999999999999999999876311112589999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .|++||+.+......  ..+.++.+++++++++.+++.    +..++.+.+|||
T Consensus        73 ~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  149 (250)
T PRK14240         73 YKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSG  149 (250)
T ss_pred             cccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCH
Confidence            42    2345778999999998887 899999998654321  112334556788889999874    456888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|+++..|
T Consensus       150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~  227 (250)
T PRK14240        150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFG  227 (250)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999964 789999999975 578899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       228 ~~~~~  232 (250)
T PRK14240        228 DTVDL  232 (250)
T ss_pred             CHHHH
Confidence            87654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-43  Score=357.62  Aligned_cols=225  Identities=22%  Similarity=0.278  Sum_probs=189.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|......+|+|.++|++
T Consensus         3 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~   72 (252)
T PRK14272          3 LLLSAQDVNIYY----------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD   72 (252)
T ss_pred             EEEEEeeeEEEE----------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEE
Confidence            368999999987          3467999999999999999999999999999999999998763111247999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ...+++.++|++|++.+++.+|+.||+.+......  ...+++..+.+++.++.+++.    +..++.+++||
T Consensus        73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  150 (252)
T PRK14272         73 IYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS  150 (252)
T ss_pred             cccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence            642    12456789999999999999999999987643221  112333455677778878753    45688899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.
T Consensus       151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14272        151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEH  228 (252)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999975 699999999986 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |++++..
T Consensus       229 ~~~~~~~  235 (252)
T PRK14272        229 GPTDQLF  235 (252)
T ss_pred             CCHHHHH
Confidence            9887653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-43  Score=363.23  Aligned_cols=221  Identities=21%  Similarity=0.278  Sum_probs=191.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|..       ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~~~-------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~i   71 (277)
T PRK13642          4 ILEVENLVFKYEK-------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGELL   71 (277)
T ss_pred             eEEEEEEEEEcCC-------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCEEEECCEEC
Confidence            5899999998821       1234599999999999999999999999999999999999986     689999999986


Q ss_pred             cc--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QD--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ..  ....++.++|++|++. .++..||.||+.+.....   ...+++..++++++++.+||.+..++++.+||||||||
T Consensus        72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  148 (277)
T PRK13642         72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQR  148 (277)
T ss_pred             CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence            43  2345778999999974 566789999998764321   22344455678999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. .+. .+|++++|++|+++..|++++
T Consensus       149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~  226 (277)
T PRK13642        149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSE  226 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999875 999999999986 454 699999999999999999876


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      ..
T Consensus       227 ~~  228 (277)
T PRK13642        227 LF  228 (277)
T ss_pred             Hh
Confidence            54

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-43  Score=357.28  Aligned_cols=222  Identities=19%  Similarity=0.289  Sum_probs=188.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|.++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~   72 (249)
T PRK14253          3 KFNIENLDLFY----------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI   72 (249)
T ss_pred             eEEEeccEEEE----------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEc
Confidence            58899999987          44679999999999999999999999999999999999987632224689999999886


Q ss_pred             cc---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChh
Q psy12625        100 QD---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG  172 (612)
                      ..   ....++.++|++|++.+++ .||.||+.+..... . ...+...++++++.++.+|+.    +..++.+++||||
T Consensus        73 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  149 (249)
T PRK14253         73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ-G-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG  149 (249)
T ss_pred             ccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc-C-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence            32   2345778999999999887 89999998764321 1 112233456678888988874    4567888999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus       150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~  227 (249)
T PRK14253        150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDD  227 (249)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999976 589999999976 6788999999999999999998


Q ss_pred             ccCh
Q psy12625        253 VPGL  256 (612)
Q Consensus       253 ~~~~  256 (612)
                      +++.
T Consensus       228 ~~~~  231 (249)
T PRK14253        228 TQVI  231 (249)
T ss_pred             HHHH
Confidence            7654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.3e-43  Score=349.94  Aligned_cols=203  Identities=29%  Similarity=0.429  Sum_probs=177.9

Q ss_pred             eEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---
Q psy12625         25 DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---  101 (612)
Q Consensus        25 ~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~---  101 (612)
                      ||+++|          +++.+  |+|+++++ |+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.+   
T Consensus         5 ~l~~~~----------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~~~~   66 (214)
T cd03297           5 DIEKRL----------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-----DGGTIVLNGTVLFDSRK   66 (214)
T ss_pred             eeeEec----------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEecccccc
Confidence            788877          44545  99999999 99999999999999999999999886     68999999988642   


Q ss_pred             ---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        102 ---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       102 ---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                         ....++.++|++|++.+++.+|++||+.+.....     .....+++++++++.+|+.+..++.+.+||||||||++
T Consensus        67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  141 (214)
T cd03297          67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA  141 (214)
T ss_pred             hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH
Confidence               1234678999999999999999999998764321     22334567889999999998889999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus       142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999875 899999999976 577899999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-43  Score=355.86  Aligned_cols=223  Identities=23%  Similarity=0.340  Sum_probs=188.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|.++
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~   72 (250)
T PRK14262          3 IIEIENFSAYY----------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI   72 (250)
T ss_pred             eEEEEeeEEEe----------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            58999999987          34679999999999999999999999999999999999987411112689999999886


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .|++||+.+......  ...++..++.+++.++.+|+.+    ..++.+.+|||
T Consensus        73 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  149 (250)
T PRK14262         73 YDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG  149 (250)
T ss_pred             ccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence            42    1235678999999999887 899999988654321  1123334566788999999853    46888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|
T Consensus       150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g  227 (250)
T PRK14262        150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYG  227 (250)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence            999999999999999999999999999999999999999999975 689999999976 578899999999999999999


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      +++++.
T Consensus       228 ~~~~~~  233 (250)
T PRK14262        228 PTREIV  233 (250)
T ss_pred             CHHHHH
Confidence            887653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-43  Score=356.28  Aligned_cols=222  Identities=20%  Similarity=0.305  Sum_probs=187.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~----------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~   73 (251)
T PRK14249          4 KIKIRGVNFFY----------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI   73 (251)
T ss_pred             eEEEEEEEEEE----------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence            58899999987          34679999999999999999999999999999999999998743223479999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++. |++||+.+....+.  ...++..++.+++.++.+|+.    +..++.+.+|||
T Consensus        74 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  150 (251)
T PRK14249         74 YSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG  150 (251)
T ss_pred             cccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence            42    13457789999999998875 99999988654321  111223345677888888874    456888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. .+.+.||++++|++|++++.|
T Consensus       151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~  228 (251)
T PRK14249        151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG  228 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence            99999999999999999999999999999999999999999995 5899999999976 578899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       229 ~~~~~  233 (251)
T PRK14249        229 RTGEI  233 (251)
T ss_pred             CHHHH
Confidence            88765

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.6e-43  Score=392.30  Aligned_cols=222  Identities=20%  Similarity=0.283  Sum_probs=194.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         4 ~i~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~   68 (501)
T PRK10762          4 LLQLKGIDKAF----------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-----DAGSILYLGKEV   68 (501)
T ss_pred             eEEEeeeEEEe----------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence            58999999988          456799999999999999999999999999999999999986     589999999986


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ...   ...++.++|++|++.+++.+||+||+.++...... ...+.++.+++++++++.+||.+..++++++|||||||
T Consensus        69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  148 (501)
T PRK10762         69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ  148 (501)
T ss_pred             CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence            421   22356799999999999999999999886432110 11223344567899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..|++++
T Consensus       149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence            999999999999999999999999999999999999999888999999999986 6788999999999999999999887


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       228 ~~  229 (501)
T PRK10762        228 LT  229 (501)
T ss_pred             CC
Confidence            53

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-43  Score=359.50  Aligned_cols=223  Identities=22%  Similarity=0.284  Sum_probs=186.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+.....+.+|+|.++|++
T Consensus        20 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   89 (268)
T PRK14248         20 HILEVKDLSIYY----------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN   89 (268)
T ss_pred             ceEEEEEEEEEe----------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence            369999999987          4567999999999999999999999999999999999986410001368999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ....++.++|++|++.+++. |++||+.+......  .......++.+.+.++.+++.    +..++.+++||
T Consensus        90 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  166 (268)
T PRK14248         90 ILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLS  166 (268)
T ss_pred             cccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCC
Confidence            642    12456789999999988884 99999987643221  112223345678889999884    45688899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.+.||++++|++|++++.
T Consensus       167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEY  244 (268)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999965 689999999976 57889999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |++++.
T Consensus       245 ~~~~~~  250 (268)
T PRK14248        245 DQTEQI  250 (268)
T ss_pred             CCHHHH
Confidence            987655

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-43  Score=356.72  Aligned_cols=223  Identities=21%  Similarity=0.307  Sum_probs=185.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .-+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus         5 ~~~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i   74 (251)
T PRK14244          5 HASVKNLNLWY----------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV   74 (251)
T ss_pred             EEEeeeEEEEE----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence            34678999887          44679999999999999999999999999999999999976211113589999999886


Q ss_pred             cch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625        100 QDH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG  171 (612)
Q Consensus       100 ~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg  171 (612)
                      ...    ...++.++|++|++.+++. ||+||+.+....+ .........++.++++++.+|+.+    ..++.+.+|||
T Consensus        75 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  152 (251)
T PRK14244         75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG  152 (251)
T ss_pred             HhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence            421    2356789999999988885 9999998764332 111122334556888999999965    45778899999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|++++.|
T Consensus       153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~  230 (251)
T PRK14244        153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYN  230 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999864 899999999986 577899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      +++++
T Consensus       231 ~~~~~  235 (251)
T PRK14244        231 TTQEI  235 (251)
T ss_pred             CHHHH
Confidence            87654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-43  Score=360.14  Aligned_cols=225  Identities=20%  Similarity=0.295  Sum_probs=192.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.++|.
T Consensus        19 ~~~l~i~nl~~~~----------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~   88 (276)
T PRK14271         19 APAMAAVNLTLGF----------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR   88 (276)
T ss_pred             CcEEEEeeEEEEE----------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence            4478999999998          456799999999999999999999999999999999999886333346899999998


Q ss_pred             eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCC
Q psy12625         98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLS  170 (612)
Q Consensus        98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LS  170 (612)
                      ++.+.   ..+++.++|++|++.+++ .|++||+.+.....  ...+.++.++++.++++.+|+.+    ..++.+.+||
T Consensus        89 ~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS  165 (276)
T PRK14271         89 SIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS  165 (276)
T ss_pred             EccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCC
Confidence            86432   345778999999998888 89999998764321  11233444556788999999974    4577889999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+++|++++|++|+++..
T Consensus       166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~  243 (276)
T PRK14271        166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEE  243 (276)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999976 489999999976 67889999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       244 g~~~~~~  250 (276)
T PRK14271        244 GPTEQLF  250 (276)
T ss_pred             CCHHHHH
Confidence            9887653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-43  Score=358.65  Aligned_cols=227  Identities=22%  Similarity=0.295  Sum_probs=190.7

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      +.+...|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.+
T Consensus        20 ~~~~~~l~~~nl~~~~----------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i   89 (272)
T PRK14236         20 SDEQTALEVRNLNLFY----------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL   89 (272)
T ss_pred             CCCCcEEEEEEEEEEE----------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence            3344579999999988          345799999999999999999999999999999999999873111136899999


Q ss_pred             CCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCccc
Q psy12625         95 NETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLT  166 (612)
Q Consensus        95 ~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~  166 (612)
                      +|.++..    ...+++.++|++|++.+++. |++||+.+......  ...+...+++++++++.+++.    +..++.+
T Consensus        90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  166 (272)
T PRK14236         90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENA  166 (272)
T ss_pred             CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc
Confidence            9998642    13457789999999988885 99999987654321  112233456688899999985    3567889


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+
T Consensus       167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~  244 (272)
T PRK14236        167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGK  244 (272)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999976 689999999976 5778999999999999


Q ss_pred             EEEecCccCh
Q psy12625        247 CTYQGTVPGL  256 (612)
Q Consensus       247 iv~~G~~~~~  256 (612)
                      ++..|++++.
T Consensus       245 i~~~g~~~~~  254 (272)
T PRK14236        245 LVEYGDTDTL  254 (272)
T ss_pred             EEecCCHHHH
Confidence            9999987754

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=4.2e-43  Score=358.03  Aligned_cols=219  Identities=25%  Similarity=0.348  Sum_probs=187.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-   98 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|++ 
T Consensus         6 ~l~~~~l~~~~----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   70 (258)
T PRK11701          6 LLSVRGLTKLY----------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-----DAGEVHYRMRDG   70 (258)
T ss_pred             eEEEeeeEEEc----------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCccc
Confidence            58999999987          346799999999999999999999999999999999999886     68999999987 


Q ss_pred             ----ccch--Hh----hccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcc
Q psy12625         99 ----LQDH--RM----LRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTL  165 (612)
Q Consensus        99 ----~~~~--~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~  165 (612)
                          +.+.  ..    .++.++|++|++.  +++.+|+.||+.+..... . .....+.++++.++++.+|+.+ ..++.
T Consensus        71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~  148 (258)
T PRK11701         71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL  148 (258)
T ss_pred             cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence                5431  11    2457999999973  677789999987643211 1 1122334567889999999974 77899


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++
T Consensus       149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~  227 (258)
T PRK11701        149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ  227 (258)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999874 899999999976 57779999999999


Q ss_pred             CeEEEecCccCh
Q psy12625        245 GYCTYQGTVPGL  256 (612)
Q Consensus       245 G~iv~~G~~~~~  256 (612)
                      |++++.|+++++
T Consensus       228 g~i~~~~~~~~~  239 (258)
T PRK11701        228 GRVVESGLTDQV  239 (258)
T ss_pred             CEEEEeCCHHHH
Confidence            999999988765

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.7e-43  Score=356.67  Aligned_cols=224  Identities=19%  Similarity=0.321  Sum_probs=191.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|......+|+|.++|+++
T Consensus         7 ~l~~~nl~~~~----------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i   76 (261)
T PRK14258          7 AIKVNNLSFYY----------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI   76 (261)
T ss_pred             eEEEeeEEEEe----------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence            58999999987          34569999999999999999999999999999999999998642223579999999886


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSg  171 (612)
                      ..    ...+++.++|++|++.+++ .|++||+.+......  ..+..+.++++.++++.+|+.+    ..++.+.+|||
T Consensus        77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  153 (261)
T PRK14258         77 YERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG  153 (261)
T ss_pred             hccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence            31    1345678999999998888 899999987653321  1123334567889999999753    56888899999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC-----C
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE-----G  245 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~-----G  245 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+.++||++++|++     |
T Consensus       154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G  232 (261)
T PRK14258        154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG  232 (261)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence            999999999999999999999999999999999999999999975 5899999999986 68899999999999     9


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+++++.
T Consensus       233 ~i~~~~~~~~~~  244 (261)
T PRK14258        233 QLVEFGLTKKIF  244 (261)
T ss_pred             eEEEeCCHHHHH
Confidence            999999988763

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-43  Score=392.37  Aligned_cols=222  Identities=23%  Similarity=0.348  Sum_probs=193.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i   69 (510)
T PRK09700          5 YISMAGIGKSF----------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----TKGTITINNINY   69 (510)
T ss_pred             eEEEeeeEEEc----------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-----CccEEEECCEEC
Confidence            58999999987          456799999999999999999999999999999999999886     689999999987


Q ss_pred             cch--H-hhccceEEEccCCCCCCCCCHHHHHHHHHHhc---cCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625        100 QDH--R-MLRKESCYIMQDNLLQELLTVEESLTVAAHLK---LGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~--~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~---~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG  172 (612)
                      ...  . ..++.++||+|++.+++.+||+||+.++....   .+. ..+.++.+++++++++.+||.+..++++++||||
T Consensus        70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  149 (510)
T PRK09700         70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSIS  149 (510)
T ss_pred             CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHH
Confidence            432  1 23467999999999999999999998753210   010 0123344567899999999999999999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+
T Consensus       150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~  228 (510)
T PRK09700        150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM  228 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence            999999999999999999999999999999999999999999888999999999976 6788999999999999999999


Q ss_pred             ccChh
Q psy12625        253 VPGLV  257 (612)
Q Consensus       253 ~~~~~  257 (612)
                      ++++.
T Consensus       229 ~~~~~  233 (510)
T PRK09700        229 VSDVS  233 (510)
T ss_pred             hhhCC
Confidence            88753

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-43  Score=354.83  Aligned_cols=222  Identities=22%  Similarity=0.289  Sum_probs=187.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|+++
T Consensus         6 ~i~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~   75 (253)
T PRK14261          6 ILSTKNLNLWY----------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI   75 (253)
T ss_pred             eEEEeeeEEEE----------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            68999999987          45679999999999999999999999999999999999876321112489999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .||+||+.+....+.  .......++.+.++++.+++.    +..++.+.+|||
T Consensus        76 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  152 (253)
T PRK14261         76 MDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG  152 (253)
T ss_pred             cccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence            43    1345678999999999888 499999998754321  112233456788889998874    346788999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|+++..|
T Consensus       153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g  230 (253)
T PRK14261        153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFD  230 (253)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcC
Confidence            999999999999999999999999999999999999999999976 589999999976 577899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      +++++
T Consensus       231 ~~~~~  235 (253)
T PRK14261        231 KTTQI  235 (253)
T ss_pred             CHHHH
Confidence            88765

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=5.9e-43  Score=344.81  Aligned_cols=199  Identities=30%  Similarity=0.448  Sum_probs=174.1

Q ss_pred             EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--
Q psy12625         24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--  101 (612)
Q Consensus        24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--  101 (612)
                      +|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++..  
T Consensus         2 ~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~~~~   66 (206)
T TIGR03608         2 KNISKKF----------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----DSGQVYLNGKETPPLN   66 (206)
T ss_pred             cceEEEE----------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEccccc
Confidence            6788876          446799999999999999999999999999999999999886     68999999998531  


Q ss_pred             -h---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        102 -H---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       102 -~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                       .   ...++.++|++|++.+++.+|++||+.+.....   ...+.+..++++++++.+|+++..++.+.+||||||||+
T Consensus        67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~  143 (206)
T TIGR03608        67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRV  143 (206)
T ss_pred             hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHH
Confidence             1   134678999999999999999999999865432   223344567789999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      +|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. . .+.||++++|
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l  206 (206)
T TIGR03608       144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL  206 (206)
T ss_pred             HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence            9999999999999999999999999999999999999877999999999985 3 4789999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-42  Score=354.99  Aligned_cols=222  Identities=19%  Similarity=0.321  Sum_probs=188.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+|......+|+|.++|+++
T Consensus         7 ~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i   76 (259)
T PRK14260          7 AIKVKDLSFYY----------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI   76 (259)
T ss_pred             eEEEEEEEEEE----------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence            58999999987          44679999999999999999999999999999999999987521001489999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .||+||+.+....+.  ..++.+.+++++++++.+|+.    +..++.+.+|||
T Consensus        77 ~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  153 (259)
T PRK14260         77 YDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG  153 (259)
T ss_pred             cccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence            42    1345678999999999887 899999987654321  123334456788899999883    567888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-----CCe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-----EGY  246 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-----~G~  246 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+     +|+
T Consensus       154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~  231 (259)
T PRK14260        154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQ  231 (259)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCce
Confidence            999999999999999999999999999999999999999999975 589999999986 6889999999997     599


Q ss_pred             EEEecCccCh
Q psy12625        247 CTYQGTVPGL  256 (612)
Q Consensus       247 iv~~G~~~~~  256 (612)
                      +++.|+++++
T Consensus       232 i~~~~~~~~~  241 (259)
T PRK14260        232 MVEFGVTTQI  241 (259)
T ss_pred             EEEeCCHHHH
Confidence            9999988875

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.5e-43  Score=326.78  Aligned_cols=215  Identities=28%  Similarity=0.441  Sum_probs=193.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      ++..++++.+|+.        ..+.+|+|+|+++.+||.++++||||||||||||+++|+.+|     ..|+|.+||+++
T Consensus         3 ~l~~~~~sl~y~g--------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-----~~G~i~l~~r~i   69 (259)
T COG4525           3 MLNVSHLSLSYEG--------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-----SRGSIQLNGRRI   69 (259)
T ss_pred             eeehhheEEecCC--------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-----ccceEEECCEec
Confidence            4566788877732        235599999999999999999999999999999999999987     689999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      ..+.   ..-|.|+|++.++|.+||.||+.|+.+++   .+++.++.+++.+.+..+||++..++++-+|||||||||.|
T Consensus        70 ~gPg---aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi  143 (259)
T COG4525          70 EGPG---AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI  143 (259)
T ss_pred             cCCC---ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence            6542   23589999999999999999999998886   57788899999999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP  254 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~  254 (612)
                      ||||+.+|++|+||||+++||..+++++-++|-++.+ .|+.++++||+.. +..-+++++++|+.  |+++..-+++
T Consensus       144 ARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         144 ARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             HHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence            9999999999999999999999999999999999876 7999999999987 56678999999985  7998877665

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.4e-43  Score=356.89  Aligned_cols=215  Identities=26%  Similarity=0.422  Sum_probs=178.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|+++.|.        .+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~~--------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~~   67 (237)
T cd03252           1 ITFEHVRFRYK--------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-----ENGRVLVDGHDLA   67 (237)
T ss_pred             CEEEEEEEecC--------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCeehH
Confidence            46899998872        1236799999999999999999999999999999999999986     6899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHLSG  171 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~LSg  171 (612)
                      .  ...+++.++|++|++.+++ .||+||+.+...     .......     ....+++++.+  ++++..++++.+|||
T Consensus        68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSg  141 (237)
T cd03252          68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG  141 (237)
T ss_pred             hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCH
Confidence            2  2345678999999988775 799999976421     1111111     11234556666  666677888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+ ..||++++|++|++++.|
T Consensus       142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~  218 (237)
T cd03252         142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQG  218 (237)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999999974 899999999986 45 569999999999999999


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      +++++.
T Consensus       219 ~~~~~~  224 (237)
T cd03252         219 SHDELL  224 (237)
T ss_pred             CHHHHH
Confidence            877654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=352.58  Aligned_cols=223  Identities=22%  Similarity=0.274  Sum_probs=186.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .+|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.++|++
T Consensus         4 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   73 (252)
T PRK14255          4 KIITSSDVHLFY----------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN   73 (252)
T ss_pred             ceEEEEeEEEEE----------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence            468999999987          3467999999999999999999999999999999999986521011248999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ...+++.++|++|++.+++ .|++||+.+....+.  ...++..++++.+.++.+++.    +..++.+++||
T Consensus        74 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS  150 (252)
T PRK14255         74 IYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLS  150 (252)
T ss_pred             cccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCC
Confidence            632    2345678999999998888 799999988654321  111222345667788888763    45678899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..
T Consensus       151 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999976 489999999986 57889999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |++.+.
T Consensus       229 ~~~~~~  234 (252)
T PRK14255        229 ADTKQM  234 (252)
T ss_pred             CCHHHH
Confidence            988765

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8.2e-43  Score=342.99  Aligned_cols=198  Identities=33%  Similarity=0.459  Sum_probs=169.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+.|+||+|.|+.      +.+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.  .+.+|+|.++|+++
T Consensus         3 ~~~~~~~~~~~~~------~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~~~~G~i~i~g~~~   74 (202)
T cd03233           3 TLSWRNISFTTGK------GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--VSVEGDIHYNGIPY   74 (202)
T ss_pred             eEEEEccEEEecc------CCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--CCcceEEEECCEEC
Confidence            6889999999953      224678999999999999999999999999999999999998831  13689999999986


Q ss_pred             cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      ... ...++.++|++|++.+++.+||+||+.+.....                          .++.+.+||||||||++
T Consensus        75 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~  128 (202)
T cd03233          75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVS  128 (202)
T ss_pred             ccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHH
Confidence            543 345678999999999999999999998753210                          56778899999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus       129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            999999999999999999999999999999999999875 6777776665444678999999999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-42  Score=356.66  Aligned_cols=227  Identities=19%  Similarity=0.252  Sum_probs=190.0

Q ss_pred             CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      .+.++..|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.
T Consensus        14 ~~~~~~~l~~~nl~~~~----------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   83 (274)
T PRK14265         14 INPDHSVFEVEGVKVFY----------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL   83 (274)
T ss_pred             cCCCCceEEEeeEEEEe----------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE
Confidence            35566689999999987          44679999999999999999999999999999999999986421112589999


Q ss_pred             ECCEeccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcc
Q psy12625         94 INETRLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTL  165 (612)
Q Consensus        94 ~~g~~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~  165 (612)
                      ++|+++..    ...+++.++|++|++.+++. ||.||+.+....+   ... ...++.+++.++.+++.    +..+++
T Consensus        84 ~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~  158 (274)
T PRK14265         84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEK  158 (274)
T ss_pred             ECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence            99988642    13456789999999988874 9999998864432   111 12234567788888873    456888


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec--
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT--  243 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--  243 (612)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|+  
T Consensus       159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~  236 (274)
T PRK14265        159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE  236 (274)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence            999999999999999999999999999999999999999999999999975 689999999986 6789999999997  


Q ss_pred             -------CCeEEEecCccChh
Q psy12625        244 -------EGYCTYQGTVPGLV  257 (612)
Q Consensus       244 -------~G~iv~~G~~~~~~  257 (612)
                             +|++++.|+++++.
T Consensus       237 ~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        237 IDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             cccccccCceEEEeCCHHHHH
Confidence                   89999999998763

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=352.58  Aligned_cols=222  Identities=23%  Similarity=0.325  Sum_probs=186.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|          +.+++|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~----------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~   73 (251)
T PRK14251          4 IISAKDVHLSY----------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI   73 (251)
T ss_pred             eEEEEeeEEEE----------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence            58999999987          44679999999999999999999999999999999999986210112589999999986


Q ss_pred             cc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCCh
Q psy12625        100 QD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg  171 (612)
                      ..    ....++.++|++|++.+++ .||+||+.+......  ...++..+++++++++.+|+.    +..++.+.+|||
T Consensus        74 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  150 (251)
T PRK14251         74 YGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG  150 (251)
T ss_pred             ccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH
Confidence            32    1345678999999998886 799999987643321  112233446678899999984    456888999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|
T Consensus       151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~  228 (251)
T PRK14251        151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAG  228 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999864 689999999986 578899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       229 ~~~~~  233 (251)
T PRK14251        229 PTEEM  233 (251)
T ss_pred             CHHHH
Confidence            87765

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.4e-42  Score=355.98  Aligned_cols=229  Identities=21%  Similarity=0.329  Sum_probs=190.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|...... .+..++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~~~nl~~~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~sG~i~~~g~~~   76 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLS-GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-----SQGNVSWRGEPL   76 (268)
T ss_pred             eEEEeceEEEecCCccc-cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEec
Confidence            48899999988310000 000136799999999999999999999999999999999999876     689999999986


Q ss_pred             cch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625        100 QDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg  171 (612)
                      ...     ...++.++|++|++  .+++..|+.|++.+......  .....+..++++++++.+|+. +..++.+.+|||
T Consensus        77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~  154 (268)
T PRK10419         77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG  154 (268)
T ss_pred             cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence            432     23567899999997  46677999999876532111  123344556789999999997 578999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.
T Consensus       155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~  233 (268)
T PRK10419        155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVET  233 (268)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeee
Confidence            9999999999999999999999999999999999999999999874 899999999976 57789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |++++..
T Consensus       234 g~~~~~~  240 (268)
T PRK10419        234 QPVGDKL  240 (268)
T ss_pred             CChhhcc
Confidence            9987754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=7.6e-43  Score=389.06  Aligned_cols=215  Identities=25%  Similarity=0.350  Sum_probs=191.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus        11 ~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   75 (510)
T PRK15439         11 LLCARSISKQY----------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----DSGTLEIGGNPC   75 (510)
T ss_pred             eEEEEeEEEEe----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEC
Confidence            69999999988          456799999999999999999999999999999999999886     689999999986


Q ss_pred             cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...  .. .++.++|++|++.+++.+||+||+.+....       ..+.+++++++++.+||.+..++++++||||||||
T Consensus        76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  148 (510)
T PRK15439         76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQI  148 (510)
T ss_pred             CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHH
Confidence            432  22 235799999999999999999999875311       12345678899999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|++++.
T Consensus       149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence            99999999999999999999999999999999999999888999999999976 57889999999999999999998765


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       228 ~  228 (510)
T PRK15439        228 S  228 (510)
T ss_pred             C
Confidence            3

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.2e-42  Score=346.28  Aligned_cols=212  Identities=27%  Similarity=0.457  Sum_probs=184.0

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..      +.+.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~   70 (220)
T TIGR02982         2 ISIRNLNHYYGH------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-----QEGSLKVLGQELY   70 (220)
T ss_pred             EEEEEEEEEccC------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEhH
Confidence            678999998721      11236799999999999999999999999999999999999876     6899999999864


Q ss_pred             ch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        101 DH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      ..     ...++.++|++|++.+++.+|+.||+.+......  ....++.+++++++++.+||.+..++.+.+|||||||
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q  148 (220)
T TIGR02982        71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ  148 (220)
T ss_pred             hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence            21     1356789999999999999999999998654321  1234445667899999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +++|||+++|+++  ..+.||++++|++|++
T Consensus       149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999986 5899999999975  4689999999999985

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.4e-42  Score=353.29  Aligned_cols=220  Identities=20%  Similarity=0.318  Sum_probs=185.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|           ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. .+++|+|.++|++
T Consensus         3 ~~l~~~~l~~~~-----------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-~~~~G~i~~~g~~   70 (254)
T PRK10418          3 QQIELRNIALQA-----------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-RQTAGRVLLDGKP   70 (254)
T ss_pred             cEEEEeCeEEEe-----------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCcCCEEEECCee
Confidence            368999999976           2469999999999999999999999999999999999987521 1268999999998


Q ss_pred             ccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCCCChhh
Q psy12625         99 LQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKHLSGGQ  173 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGe  173 (612)
                      +......++.++|++|++.  +.+..|+.+++.+.+... .  ...  .++++.++++.+||.+   ..++.+++|||||
T Consensus        71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq  145 (254)
T PRK10418         71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-G--KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGM  145 (254)
T ss_pred             ccccccccceEEEEecCCccccCccccHHHHHHHHHHHc-C--CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHH
Confidence            6432223467999999974  456679999987643321 1  111  2367889999999987   4688999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus       146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~  224 (254)
T PRK10418        146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGD  224 (254)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence            9999999999999999999999999999999999999999976 4899999999976 5778999999999999999998


Q ss_pred             ccCh
Q psy12625        253 VPGL  256 (612)
Q Consensus       253 ~~~~  256 (612)
                      ++++
T Consensus       225 ~~~~  228 (254)
T PRK10418        225 VETL  228 (254)
T ss_pred             HHHH
Confidence            7765

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=8.5e-43  Score=349.78  Aligned_cols=201  Identities=25%  Similarity=0.414  Sum_probs=175.2

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHH
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE  125 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~  125 (612)
                      |+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++....   ...+|++|++.+++.+||+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~~~~tv~   72 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----TSGGVILEGKQITEPG---PDRMVVFQNYSLLPWLTVR   72 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEECCCCC---hhheEEecCcccCCCCCHH
Confidence            5899999999999999999999999999999999886     6899999999864321   1248999999999999999


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                      ||+.+......+ ...+.+.+++++++++.+||++..++.+++||||||||++|||+|+.+|++++|||||+|||+.++.
T Consensus        73 e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~  151 (230)
T TIGR01184        73 ENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG  151 (230)
T ss_pred             HHHHHHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence            999886321111 2334445667899999999999899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        206 NLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       206 ~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      .+.+.|+++++ .|+|||+++|++. ++.++||++++|++|+++..|++.++
T Consensus       152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence            99999999987 4899999999986 57889999999999999998865543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-42  Score=355.81  Aligned_cols=224  Identities=21%  Similarity=0.292  Sum_probs=186.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|          +++.+|+|+|+++++||+++|+|+||||||||+++|+|+.++....+.+|+|.++|+
T Consensus        22 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~   91 (271)
T PRK14238         22 KVVFDTQNLNLWY----------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ   91 (271)
T ss_pred             ceEEEEeeeEEEE----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence            3469999999987          345799999999999999999999999999999999999862101136899999999


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC----CccccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS----ISTCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.+++ .||+||+.++.....  ...++..++.+.+.++.++    +.+..++.+.+|
T Consensus        92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L  168 (271)
T PRK14238         92 NIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL  168 (271)
T ss_pred             EcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence            8632    2345678999999998887 599999988654321  1122233455677787775    445668889999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++
T Consensus       169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~  246 (271)
T PRK14238        169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNE  246 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999976 689999999976 5778999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|+++++
T Consensus       247 ~g~~~~~  253 (271)
T PRK14238        247 YDDTDKI  253 (271)
T ss_pred             eCCHHHH
Confidence            9987755

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=3.3e-42  Score=350.16  Aligned_cols=221  Identities=21%  Similarity=0.233  Sum_probs=185.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECC
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINE   96 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g   96 (612)
                      ..|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.  +|     .+|+|.++|
T Consensus         6 ~~l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~G~i~~~g   70 (252)
T CHL00131          6 PILEIKNLHASV----------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----LEGDILFKG   70 (252)
T ss_pred             ceEEEEeEEEEe----------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-----CCceEEECC
Confidence            369999999987          3456999999999999999999999999999999999973  43     689999999


Q ss_pred             Eeccch--Hhhcc-ceEEEccCCCCCCCCCHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHHcCCc-cccCcccC-
Q psy12625         97 TRLQDH--RMLRK-ESCYIMQDNLLQELLTVEESLTVAAHLKLG----NQYSRKAKESKVDSIADSLSIS-TCKNTLTK-  167 (612)
Q Consensus        97 ~~~~~~--~~~~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-  167 (612)
                      .++...  ...++ .++|++|++.+++.+|+.|++.+.......    ......+..+++.++++.+|+. +..++.+. 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  150 (252)
T CHL00131         71 ESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNE  150 (252)
T ss_pred             EEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccccc
Confidence            986432  22232 488999999999999999998875432110    0111223346778899999997 46788887 


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~  246 (612)
                      +||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|+
T Consensus       151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~  229 (252)
T CHL00131        151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGK  229 (252)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCE
Confidence            59999999999999999999999999999999999999999999999878999999999976 45555 89999999999


Q ss_pred             EEEecCccC
Q psy12625        247 CTYQGTVPG  255 (612)
Q Consensus       247 iv~~G~~~~  255 (612)
                      +++.|+++.
T Consensus       230 i~~~~~~~~  238 (252)
T CHL00131        230 IIKTGDAEL  238 (252)
T ss_pred             EEEecChhh
Confidence            999998874

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-42  Score=357.34  Aligned_cols=224  Identities=21%  Similarity=0.307  Sum_probs=187.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+.....+.+|+|.++|+
T Consensus        37 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~  106 (286)
T PRK14275         37 KPHVVAKNFSIYY----------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE  106 (286)
T ss_pred             ceEEEEeeeEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence            3468999999987          345699999999999999999999999999999999998541000126899999998


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.+++. ||.||+.+......  ..+....++++.++++.+|+.    +..++.+.+|
T Consensus       107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  183 (286)
T PRK14275        107 DIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL  183 (286)
T ss_pred             EhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC
Confidence            8642    12356789999999988874 99999998654321  112233456678889999873    5668889999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++||+. .+.++||++++|++|+++.
T Consensus       184 SgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~  261 (286)
T PRK14275        184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVE  261 (286)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999975 589999999986 5788999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|+++++
T Consensus       262 ~g~~~~~  268 (286)
T PRK14275        262 HAPTAQL  268 (286)
T ss_pred             eCCHHHH
Confidence            9987765

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.8e-42  Score=352.37  Aligned_cols=219  Identities=26%  Similarity=0.361  Sum_probs=184.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-   98 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|++ 
T Consensus         3 ~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   67 (253)
T TIGR02323         3 LLQVSGLSKSY----------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----DHGTATYIMRSG   67 (253)
T ss_pred             eEEEeeeEEEe----------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEEecccc
Confidence            58999999987          345689999999999999999999999999999999999886     58999999976 


Q ss_pred             ----ccch--H----hhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcc
Q psy12625         99 ----LQDH--R----MLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTL  165 (612)
Q Consensus        99 ----~~~~--~----~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~  165 (612)
                          +...  .    ..++.++|++|++.  +.+.+|+.||+.+.... .. .......+++++++++.+|+. +..++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~  145 (253)
T TIGR02323        68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IG-ARHYGNIRAAAHDWLEEVEIDPTRIDDL  145 (253)
T ss_pred             cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hc-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence                4321  1    12457999999974  45567999998754321 11 111123456788999999997 478999


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+...+|++++|++
T Consensus       146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~  224 (253)
T TIGR02323       146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ  224 (253)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence            999999999999999999999999999999999999999999999999876 4899999999976 67789999999999


Q ss_pred             CeEEEecCccCh
Q psy12625        245 GYCTYQGTVPGL  256 (612)
Q Consensus       245 G~iv~~G~~~~~  256 (612)
                      |++++.|+++++
T Consensus       225 G~i~~~~~~~~~  236 (253)
T TIGR02323       225 GRVVESGLTDQV  236 (253)
T ss_pred             CEEEEECCHHHH
Confidence            999999987655

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=2.6e-43  Score=398.93  Aligned_cols=224  Identities=29%  Similarity=0.433  Sum_probs=185.5

Q ss_pred             CCCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE
Q psy12625         13 KSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI   92 (612)
Q Consensus        13 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I   92 (612)
                      +...-...++++||+|+|..        .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|     .+|+|
T Consensus       464 ~~~~~~g~I~~~nvsf~y~~--------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-----~~G~I  530 (709)
T COG2274         464 HLPKLQGEIEFENVSFRYGP--------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-----QQGRI  530 (709)
T ss_pred             cccccCceEEEEEEEEEeCC--------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceE
Confidence            33444568999999999832        445799999999999999999999999999999999999987     68999


Q ss_pred             EECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccC
Q psy12625         93 EINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKN  163 (612)
Q Consensus        93 ~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~  163 (612)
                      .+||.++.+  ...+|+++|||+||+.+|. -|++||+.++..     ..+.++.     ...+.+.++.+  |++....
T Consensus       531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~  604 (709)
T COG2274         531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIENLPMGYDTPVG  604 (709)
T ss_pred             EECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence            999999754  4678999999999999886 699999987531     2222221     12233334433  3333444


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ....+||||||||++|||||+++|+||+||||||+||+.+.+.+.+.|.++. +|+|+|+++|.++  ..+.||||++|+
T Consensus       605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~  681 (709)
T COG2274         605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLD  681 (709)
T ss_pred             cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEcc
Confidence            4455799999999999999999999999999999999999999999999986 4689999999985  478999999999


Q ss_pred             CCeEEEecCccChhh
Q psy12625        244 EGYCTYQGTVPGLVP  258 (612)
Q Consensus       244 ~G~iv~~G~~~~~~~  258 (612)
                      +|+++.+|+.+++..
T Consensus       682 ~Gkiv~~gs~~ell~  696 (709)
T COG2274         682 QGKIVEQGSHEELLA  696 (709)
T ss_pred             CCceeccCCHHHHHH
Confidence            999999999998865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.2e-43  Score=352.73  Aligned_cols=215  Identities=27%  Similarity=0.391  Sum_probs=179.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.+..        .++.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~   67 (234)
T cd03251           1 VEFKNVTFRYPG--------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-----DSGRILIDGHDVR   67 (234)
T ss_pred             CEEEEEEEEeCC--------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-----CCCEEEECCEEhh
Confidence            468999998721        224799999999999999999999999999999999999986     6899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHLSG  171 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~LSg  171 (612)
                      .  ....++.++|++|++.+++ .||+||+.+....     ......     ...+++.++.+  |+.+..++.+.+|||
T Consensus        68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~  141 (234)
T cd03251          68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG  141 (234)
T ss_pred             hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCH
Confidence            3  2345678999999998886 6999999764321     111111     11345667776  788888889999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+. .||++++|++|+++..|
T Consensus       142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~  218 (234)
T cd03251         142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERG  218 (234)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeC
Confidence            999999999999999999999999999999999999999999974 899999999986 454 49999999999999998


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      ++++..
T Consensus       219 ~~~~~~  224 (234)
T cd03251         219 THEELL  224 (234)
T ss_pred             CHHHHH
Confidence            876653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-42  Score=352.84  Aligned_cols=222  Identities=18%  Similarity=0.252  Sum_probs=186.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|....+.+|+|.++|++
T Consensus         9 ~~l~i~~v~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   78 (264)
T PRK14243          9 TVLRTENLNVYY----------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN   78 (264)
T ss_pred             eEEEEeeeEEEE----------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence            369999999987          4457999999999999999999999999999999999987631111268999999988


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ...+++.++|++|++.+++ .|++||+.+.....   ... ...+++++++++.+++.    +..++.+.+||
T Consensus        79 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  153 (264)
T PRK14243         79 LYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLS  153 (264)
T ss_pred             ccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCC
Confidence            631    2345678999999998887 59999998865332   111 22345677788888874    35678899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-------
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-------  243 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-------  243 (612)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+       
T Consensus       154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~  231 (264)
T PRK14243        154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGG  231 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccc
Confidence            9999999999999999999999999999999999999999999976 489999999976 6889999999998       


Q ss_pred             --CCeEEEecCccChh
Q psy12625        244 --EGYCTYQGTVPGLV  257 (612)
Q Consensus       244 --~G~iv~~G~~~~~~  257 (612)
                        +|++++.|+++++.
T Consensus       232 ~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        232 GRYGYLVEFDRTEKIF  247 (264)
T ss_pred             ccCceEEEeCCHHHHH
Confidence              79999999887763

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-42  Score=384.56  Aligned_cols=222  Identities=21%  Similarity=0.285  Sum_probs=190.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|.   +.+|+|.++|+++.
T Consensus         2 l~i~~l~~~~----------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~---~~~G~i~~~g~~~~   68 (500)
T TIGR02633         2 LEMKGIVKTF----------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSPLK   68 (500)
T ss_pred             EEEEeEEEEe----------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECC
Confidence            7889999987          4467999999999999999999999999999999999998751   25899999999864


Q ss_pred             ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCcccc-CcccCCCChhhhh
Q psy12625        101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCK-NTLTKHLSGGQKK  175 (612)
Q Consensus       101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~LSgGerq  175 (612)
                      ..   ...++.++||+|++.+++.+||+||+.+........ ....++.+++++++++.+|+.+.. ++++++|||||||
T Consensus        69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q  148 (500)
T TIGR02633        69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQ  148 (500)
T ss_pred             CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHH
Confidence            32   123567999999999999999999998864332110 122334456789999999998765 6779999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..|++++
T Consensus       149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence            999999999999999999999999999999999999999888999999999976 6788999999999999999998876


Q ss_pred             h
Q psy12625        256 L  256 (612)
Q Consensus       256 ~  256 (612)
                      .
T Consensus       228 ~  228 (500)
T TIGR02633       228 M  228 (500)
T ss_pred             C
Confidence            4

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-42  Score=355.45  Aligned_cols=222  Identities=18%  Similarity=0.299  Sum_probs=187.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|....+.+|+|.++|+
T Consensus        37 ~~~l~i~~l~~~~----------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~  106 (285)
T PRK14254         37 ETVIEARDLNVFY----------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK  106 (285)
T ss_pred             CceEEEEEEEEEE----------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence            3469999999987          346799999999999999999999999999999999999863110136899999998


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.+++. ||+||+.+......   .+. ..+++++++++.+|+.    +..++++.+|
T Consensus       107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L  181 (285)
T PRK14254        107 NVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDL  181 (285)
T ss_pred             EccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccC
Confidence            8632    23457789999999988885 99999988654321   222 3456788999999985    4568889999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee-eecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY-VLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G~iv  248 (612)
                      |||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||+++|++. .+.+++|+++ +|++|+++
T Consensus       182 SgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~  259 (285)
T PRK14254        182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELV  259 (285)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEE
Confidence            999999999999999999999999999999999999999999999864 79999999976 6778999975 67999999


Q ss_pred             EecCccCh
Q psy12625        249 YQGTVPGL  256 (612)
Q Consensus       249 ~~G~~~~~  256 (612)
                      ..|++++.
T Consensus       260 ~~g~~~~~  267 (285)
T PRK14254        260 EFDDTDKI  267 (285)
T ss_pred             EeCCHHHH
Confidence            99987654

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-42  Score=361.32  Aligned_cols=226  Identities=20%  Similarity=0.306  Sum_probs=190.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|+++.|..        +.+.+|+|+|++|++||+++|+|||||||||||++|+|+.++..+.+.+|+|.++|+
T Consensus        78 ~~~i~~~nls~~y~~--------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~  149 (329)
T PRK14257         78 ANVFEIRNFNFWYMN--------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT  149 (329)
T ss_pred             CceEEEEeeEEEecC--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence            347999999998831        345699999999999999999999999999999999999864222246899999999


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHcCCc----cccCcccCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIADSLSIS----TCKNTLTKH  168 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~~~~  168 (612)
                      ++..    ...+++.++||||++.+++ .|++||+.|+....   ...+ +..++.++++++.++|.    +..++.+.+
T Consensus       150 ~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~  225 (329)
T PRK14257        150 NTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNA  225 (329)
T ss_pred             EccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCccc
Confidence            9742    1346788999999999885 79999999864321   1222 22344578888988874    456788889


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.||||++|++|+++
T Consensus       226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~  303 (329)
T PRK14257        226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIE  303 (329)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999876 689999999986 577889999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      +.|+++++.
T Consensus       304 e~g~~~~l~  312 (329)
T PRK14257        304 EAGETKTIF  312 (329)
T ss_pred             EeCCHHHHh
Confidence            999998874

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.6e-42  Score=347.75  Aligned_cols=208  Identities=26%  Similarity=0.355  Sum_probs=177.2

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC--CCCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL--LQELL  122 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~--l~~~l  122 (612)
                      +|+|+|+++++||+++|+||||||||||+|+|+|+.+|. ..+.+|+|.++|+++......++.++|++|++.  +.+.+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            579999999999999999999999999999999998852 112589999999986443223467999999984  55678


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc---cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS---TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL  199 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL  199 (612)
                      |++|++.+......   ......+++++++++.+|+.   +..++.+.+|||||||||+|||+|+.+|++++|||||+||
T Consensus        80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L  156 (230)
T TIGR02770        80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL  156 (230)
T ss_pred             CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            99999977543321   11233456789999999998   5678999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        200 DYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       200 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |+.++..+.+.|+++++ .|+|||+++|+++ ++...+|++++|++|+++..|+++++.
T Consensus       157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       157 DVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999987 4899999999976 677899999999999999999877653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-42  Score=350.50  Aligned_cols=224  Identities=24%  Similarity=0.343  Sum_probs=188.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC-CceeEEEECCEe
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~-~~~G~I~~~g~~   98 (612)
                      .++++|++++|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|..+. ...|++.++|++
T Consensus        10 ~i~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~   79 (257)
T PRK14246         10 VFNISRLYLYI----------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD   79 (257)
T ss_pred             heeeeeEEEec----------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcc
Confidence            58999999987          5677999999999999999999999999999999999998874321 123666666665


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCChh
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLSGG  172 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG  172 (612)
                      +..  ....++.++|++|++.+++.+|++||+.+......  ...+++.+++++++++.+|+.    +..++.++.||||
T Consensus        80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence            432  23457789999999999999999999998754321  112344556789999999996    3568889999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      ||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.||++++|++|+++..|+
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~  235 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGS  235 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999965 689999999975 5778999999999999999998


Q ss_pred             ccChh
Q psy12625        253 VPGLV  257 (612)
Q Consensus       253 ~~~~~  257 (612)
                      +++..
T Consensus       236 ~~~~~  240 (257)
T PRK14246        236 SNEIF  240 (257)
T ss_pred             HHHHH
Confidence            87653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.5e-42  Score=339.07  Aligned_cols=200  Identities=26%  Similarity=0.355  Sum_probs=175.0

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++++          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----~~G~v~~~g~~~~   66 (204)
T PRK13538          2 LEARNLACER----------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-----DAGEVLWQGEPIR   66 (204)
T ss_pred             eEEEEEEEEE----------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEcc
Confidence            7889999987          346799999999999999999999999999999999999886     5899999999864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ..+++.++|++|++.+++.+|+.||+.+.....   ..   ..+++++++++.+||.+..++++.+||||||||++|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~l  140 (204)
T PRK13538         67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVAL  140 (204)
T ss_pred             cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence            32 345678999999999999999999998865432   11   234678899999999988899999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      |+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++||+. .+.+..+|++++
T Consensus       141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL  202 (204)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence            99999999999999999999999999999999999878899999999986 455555677665

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-42  Score=383.69  Aligned_cols=218  Identities=25%  Similarity=0.350  Sum_probs=190.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~i   68 (501)
T PRK11288          4 YLSFDGIGKTF----------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----DAGSILIDGQEM   68 (501)
T ss_pred             eEEEeeeEEEE----------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEEC
Confidence            58999999988          446799999999999999999999999999999999999886     689999999986


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ...   ..+++.++|++|++.+++.+||+||+.++............+.+++++++++.+||.+..++++++||||||||
T Consensus        69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr  148 (501)
T PRK11288         69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM  148 (501)
T ss_pred             CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHH
Confidence            421   23567899999999999999999999885321110112234445678999999999988899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus       149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence            99999999999999999999999999999999999999888999999999986 67889999999999999887754

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=2.7e-42  Score=344.96  Aligned_cols=212  Identities=25%  Similarity=0.351  Sum_probs=180.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++++++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.+
T Consensus         6 ~~i~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~   70 (225)
T PRK10247          6 PLLQLQNVGYLA----------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-----TSGTLLFEGED   70 (225)
T ss_pred             ceEEEeccEEee----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCeEEECCEE
Confidence            369999999987          456799999999999999999999999999999999999876     68999999988


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq  175 (612)
                      +..  ...+++.++|++|++.+++ .|++||+.+......   .  ...+++++++++.+|+. ...++++.+|||||||
T Consensus        71 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q  144 (225)
T PRK10247         71 ISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ  144 (225)
T ss_pred             cCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence            643  2345678999999998887 599999987643321   1  11235678999999996 5789999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec-CCeEEEecCc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT-EGYCTYQGTV  253 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~  253 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++. .+ ..||++++|+ ++..+.+|..
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~~  222 (225)
T PRK10247        145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEARY  222 (225)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhhh
Confidence            99999999999999999999999999999999999999976 5899999999986 45 5699999995 4555565543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-42  Score=348.27  Aligned_cols=223  Identities=19%  Similarity=0.309  Sum_probs=187.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+.+|+|.+||.+
T Consensus         2 ~~l~~~~v~~~~----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~   71 (250)
T PRK14266          2 YRIEVENLNTYF----------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD   71 (250)
T ss_pred             cEEEEEeEEEEe----------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence            368899999987          4467999999999999999999999999999999999986421001268999999998


Q ss_pred             ccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc----cccCcccCCCC
Q psy12625         99 LQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS----TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LS  170 (612)
                      +..    ....++.++|++|++.+++. |+.||+.+.....  ....++..++++.++++.+|+.    +..++.+.+||
T Consensus        72 i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  148 (250)
T PRK14266         72 IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLS  148 (250)
T ss_pred             cccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCC
Confidence            643    23457789999999988884 9999998764322  1122334456788999999984    34578899999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++|++++.
T Consensus       149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~  226 (250)
T PRK14266        149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIES  226 (250)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEe
Confidence            9999999999999999999999999999999999999999999964 789999999986 68899999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |++++.
T Consensus       227 g~~~~~  232 (250)
T PRK14266        227 GLTDQI  232 (250)
T ss_pred             CCHHHH
Confidence            988765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-42  Score=384.46  Aligned_cols=217  Identities=21%  Similarity=0.295  Sum_probs=188.6

Q ss_pred             EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-
Q psy12625         24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-  102 (612)
Q Consensus        24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-  102 (612)
                      +|++++|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++... 
T Consensus         2 ~nl~~~~----------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~   66 (491)
T PRK10982          2 SNISKSF----------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-----DSGSILFQGKEIDFKS   66 (491)
T ss_pred             CceEEEe----------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CceEEEECCEECCCCC
Confidence            5788776          456799999999999999999999999999999999999886     689999999986421 


Q ss_pred             --HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        103 --RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       103 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                        ...++.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++++++|||||||||+||
T Consensus        67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  146 (491)
T PRK10982         67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA  146 (491)
T ss_pred             HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence              234678999999998999999999998753211110112334456789999999999889999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++.
T Consensus       147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence            9999999999999999999999999999999999888999999999976 67889999999999999999998775

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-42  Score=348.85  Aligned_cols=223  Identities=18%  Similarity=0.249  Sum_probs=188.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..+.++++++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.++.+.+|+|.++|+
T Consensus         6 ~~~~~~~~~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~   75 (261)
T PRK14263          6 PIVMDCKLDKIFY----------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ   75 (261)
T ss_pred             CceEEEEeEEEEe----------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE
Confidence            4568888988877          556799999999999999999999999999999999999876322236899999999


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc----ccCcccCCC
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST----CKNTLTKHL  169 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~L  169 (612)
                      ++..    ...+++.++|++|++.++ .+|++||+.+......   . ..+..++++++++.+|+.+    ..++.+++|
T Consensus        76 ~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L  150 (261)
T PRK14263         76 DVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSL  150 (261)
T ss_pred             eccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence            8642    124567899999999887 5999999988754321   1 2234567889999999854    345678899


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------  243 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------  243 (612)
                      |||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|+      
T Consensus       151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~  228 (261)
T PRK14263        151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQG  228 (261)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccc
Confidence            99999999999999999999999999999999999999999999964 789999999986 5788999999995      


Q ss_pred             --CCeEEEecCccChh
Q psy12625        244 --EGYCTYQGTVPGLV  257 (612)
Q Consensus       244 --~G~iv~~G~~~~~~  257 (612)
                        +|+++..|+++++.
T Consensus       229 ~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        229 TRTGYLVEMGPTAQIF  244 (261)
T ss_pred             cCCceEEEeCCHHHHH
Confidence              89999999877653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3e-42  Score=372.20  Aligned_cols=229  Identities=24%  Similarity=0.340  Sum_probs=199.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|..      ..+...+++||||++++||++||+|.|||||||+.++|.|++++.. ...+|+|.++|+++
T Consensus         5 lL~V~nL~v~~~~------~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl   77 (539)
T COG1123           5 LLEVENLTVEFAT------DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDL   77 (539)
T ss_pred             eEEEeceEEEEec------CCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcch
Confidence            6999999999954      1233579999999999999999999999999999999999998632 34689999999876


Q ss_pred             cch-----Hh-hccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc--ccCCC
Q psy12625        100 QDH-----RM-LRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT--LTKHL  169 (612)
Q Consensus       100 ~~~-----~~-~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~~~~L  169 (612)
                      ...     .. ..+.|+||||++  .+.|.+|+.+.+.-......  ..+.++.++++.++++++||.+....  ++.+|
T Consensus        78 ~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheL  155 (539)
T COG1123          78 LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQL  155 (539)
T ss_pred             hcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCccc
Confidence            432     22 236899999996  56777999999877665543  23467788999999999999887655  99999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|+++|++|||+. -+.++||||++|.+|+++
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV  234 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV  234 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999986 7999999999986 689999999999999999


Q ss_pred             EecCccChhh
Q psy12625        249 YQGTVPGLVP  258 (612)
Q Consensus       249 ~~G~~~~~~~  258 (612)
                      +.|+++++..
T Consensus       235 E~G~~~~i~~  244 (539)
T COG1123         235 ETGPTEEILS  244 (539)
T ss_pred             EecCHHHHHh
Confidence            9999998865

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.6e-42  Score=372.64  Aligned_cols=232  Identities=25%  Similarity=0.343  Sum_probs=199.1

Q ss_pred             ceeEEEEeEEEEEEeecccc-ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         18 HFNLLFQDISYSALYYDTHS-YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ...++++||++.|.....+. ...+...+++||||++++||++||+|+||||||||.|+|+|+.+|     .+|+|.++|
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-----~~G~i~~~g  352 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-----SSGSIIFDG  352 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEEeC
Confidence            44688999999996432111 112346799999999999999999999999999999999999987     689999999


Q ss_pred             Eec--c--chHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCC
Q psy12625         97 TRL--Q--DHRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHL  169 (612)
Q Consensus        97 ~~~--~--~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~L  169 (612)
                      .+.  .  +....++.+-+|+||+  .+.|.+||++++.-.......  ....+.++++.++++.+||.. ..++++++|
T Consensus       353 ~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el  430 (539)
T COG1123         353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHEL  430 (539)
T ss_pred             cccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence            772  1  1234667888999986  689999999999887665432  224566778999999999987 689999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||||||++|||||+.+|+++++|||||.||+..+.+++++|+++.+ .|.|.++++||.. .+.++||||.+|++|++|
T Consensus       431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV  509 (539)
T COG1123         431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV  509 (539)
T ss_pred             CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence            99999999999999999999999999999999999999999999987 5999999999976 689999999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      +.|+.+++.
T Consensus       510 E~G~~~~v~  518 (539)
T COG1123         510 EEGPTEKVF  518 (539)
T ss_pred             EeCCHHHHh
Confidence            999877664

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=4.2e-42  Score=337.76  Aligned_cols=197  Identities=25%  Similarity=0.360  Sum_probs=175.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||++.+          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~i~~l~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (201)
T cd03231           1 LEADELTCER----------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-----LAGRVLLNGGPLD   65 (201)
T ss_pred             CEEEEEEEEe----------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEecc
Confidence            4689999887          456799999999999999999999999999999999999886     5899999998864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ..+++.++|++|++.+++.+|++||+.+....     .    .+++++++++.+|+.+..++++.+||||||||++|
T Consensus        66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  136 (201)
T cd03231          66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVAL  136 (201)
T ss_pred             cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHH
Confidence            32 34577899999999999999999999874311     1    24567899999999988999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      ||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. +....+|+++++
T Consensus       137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~  198 (201)
T cd03231         137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL  198 (201)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence            99999999999999999999999999999999999888999999999986 567899999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-42  Score=390.80  Aligned_cols=231  Identities=21%  Similarity=0.261  Sum_probs=193.9

Q ss_pred             eeEEEEeEEEEEEeecc-ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         19 FNLLFQDISYSALYYDT-HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ..|+++||++.|..... +....+.+.+|+||||+|++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----~~G~I~~~g~  386 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-----QGGEIIFNGQ  386 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCcEEEECCE
Confidence            36999999998832000 00000125699999999999999999999999999999999999986     5899999999


Q ss_pred             eccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCC
Q psy12625         98 RLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~L  169 (612)
                      ++...     ..+++.++||+|++  .+++.+||.|++.+......  ...+++.+++++++++.+||. +..++++++|
T Consensus       387 ~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~L  464 (623)
T PRK10261        387 RIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEF  464 (623)
T ss_pred             ECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccC
Confidence            86431     23467899999997  58899999999987654321  112344557889999999996 6789999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|+++
T Consensus       465 SgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv  543 (623)
T PRK10261        465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIV  543 (623)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999874 899999999976 678999999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      +.|+++++.
T Consensus       544 ~~g~~~~i~  552 (623)
T PRK10261        544 EIGPRRAVF  552 (623)
T ss_pred             EecCHHHHh
Confidence            999988763

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.4e-42  Score=420.08  Aligned_cols=227  Identities=23%  Similarity=0.302  Sum_probs=203.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      .-.|+++||++.|.        .+++.+|+|+|+.|++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+
T Consensus      1935 ~~~L~v~nLsK~Y~--------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-----tsG~I~i~G~ 2001 (2272)
T TIGR01257      1935 TDILRLNELTKVYS--------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-----TSGDATVAGK 2001 (2272)
T ss_pred             CceEEEEEEEEEEC--------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEECCE
Confidence            34699999999882        1236799999999999999999999999999999999999986     6899999999


Q ss_pred             eccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         98 RLQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        98 ~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      ++.. ....++.+||+||++.+++.+||+|++.+.+.++   ..++++.+++++++++.+||.+.+|+++++||||||||
T Consensus      2002 ~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqR 2078 (2272)
T TIGR01257      2002 SILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK 2078 (2272)
T ss_pred             ECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHH
Confidence            8743 2345678999999999999999999999877664   23444556778999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+||+||+.+|+|++|||||+|||+.+++.+.+.|++++++|+|||+|||+++ ++..+|||+++|++|+++..|+++++
T Consensus      2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257      2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999999999888999999999976 78899999999999999999999988


Q ss_pred             hhHHh
Q psy12625        257 VPYLS  261 (612)
Q Consensus       257 ~~~f~  261 (612)
                      ...+.
T Consensus      2158 k~~~g 2162 (2272)
T TIGR01257      2158 KSKFG 2162 (2272)
T ss_pred             HHHhC
Confidence            77664

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-42  Score=352.79  Aligned_cols=220  Identities=23%  Similarity=0.390  Sum_probs=183.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|.         +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~~~~l~~~~~---------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~i   71 (272)
T PRK15056          6 GIVVNDVTVTWR---------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-----ASGKISILGQPT   71 (272)
T ss_pred             eEEEEeEEEEec---------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEh
Confidence            689999999872         235799999999999999999999999999999999999886     689999999985


Q ss_pred             cchHhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      .. ...++.++|++|++.+.  ...+++|++.++....... .......+++++++++.+||.+..++++++||||||||
T Consensus        72 ~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  150 (272)
T PRK15056         72 RQ-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKR  150 (272)
T ss_pred             HH-hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence            32 22234699999997652  2347889886542110000 11122345567889999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++
T Consensus       151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            99999999999999999999999999999999999999878999999999976 578899999877 8999999988765

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.3e-42  Score=339.78  Aligned_cols=204  Identities=24%  Similarity=0.280  Sum_probs=179.9

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..|+++|+++++          +++.+++++|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+
T Consensus         9 ~~~l~~~~l~~~~----------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~   73 (214)
T PRK13543          9 PPLLAAHALAFSR----------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-----ESGQIQIDGK   73 (214)
T ss_pred             cceEEEeeEEEec----------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CCeeEEECCE
Confidence            3479999999987          446799999999999999999999999999999999999886     6899999999


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ++.. ...++.++|++|++.+++.+|++||+.+....+   ..   ..++.++++++.+||.+..++++.+||||||||+
T Consensus        74 ~i~~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv  146 (214)
T PRK13543         74 TATR-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRL  146 (214)
T ss_pred             Eccc-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHH
Confidence            8653 234567999999999999899999998865432   11   1235678899999999889999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +|||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++||+. ++.+++|++++++.
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~  212 (214)
T PRK13543        147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence            9999999999999999999999999999999999999888999999999986 68899999998864

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=7.6e-42  Score=334.03  Aligned_cols=191  Identities=46%  Similarity=0.717  Sum_probs=166.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECC
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINE   96 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g   96 (612)
                      ..|+++|+++.|...    .+...+.+|+|+|+++++||+++|+||||||||||+++|+|+.  +|     .+|+|.++|
T Consensus         2 ~~l~~~~ls~~~~~~----~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----~~G~i~~~g   72 (194)
T cd03213           2 VTLSFRNLTVTVKSS----PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-----VSGEVLING   72 (194)
T ss_pred             cEEEEEeeEEEEecC----CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-----CceEEEECC
Confidence            358999999998320    0001367999999999999999999999999999999999998  75     689999999


Q ss_pred             EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      +++.. ...++.++|++|++.+++.+|++||+.+.....                                +||||||||
T Consensus        73 ~~~~~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--------------------------------~LS~G~~qr  119 (194)
T cd03213          73 RPLDK-RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------------------------------GLSGGERKR  119 (194)
T ss_pred             EeCch-HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--------------------------------cCCHHHHHH
Confidence            98653 345678999999999999999999997643110                                899999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus       120 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         120 VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999998789999999999864577899999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=1e-42  Score=350.89  Aligned_cols=217  Identities=29%  Similarity=0.408  Sum_probs=177.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|+++.|..       .+++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         1 l~i~~l~~~~~~-------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~   68 (238)
T cd03249           1 IEFKNVSFRYPS-------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----TSGEILLDGVDIR   68 (238)
T ss_pred             CeEEEEEEecCC-------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-----CCCEEEECCEehh
Confidence            468999988721       1235699999999999999999999999999999999999886     6899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCCCCh
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKHLSG  171 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSg  171 (612)
                      .  ....++.++|++|++.+++ .||+||+.+.....     ..++..+     .+.+.++.+  |+....++.+.+|||
T Consensus        69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~  142 (238)
T cd03249          69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSG  142 (238)
T ss_pred             hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCH
Confidence            2  2344567999999998876 69999997642211     1111111     123444444  666667888899999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++ ..||++++|++|++++.|
T Consensus       143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~  219 (238)
T cd03249         143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQG  219 (238)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999997 7899999999986 45 489999999999999999


Q ss_pred             CccChhh
Q psy12625        252 TVPGLVP  258 (612)
Q Consensus       252 ~~~~~~~  258 (612)
                      +.++..+
T Consensus       220 ~~~~~~~  226 (238)
T cd03249         220 THDELMA  226 (238)
T ss_pred             CHHHHhh
Confidence            8766544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8.3e-42  Score=333.24  Aligned_cols=189  Identities=40%  Similarity=0.644  Sum_probs=164.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|..      ..+++++|+|+|+++++||+++|+||||||||||+++|+|+.++   .+.+|+|.++|+++
T Consensus         3 ~l~~~~l~~~~~~------~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~~~G~i~~~g~~~   73 (192)
T cd03232           3 VLTWKNLNYTVPV------KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA---GVITGEILINGRPL   73 (192)
T ss_pred             EEEEeeeEEEecC------CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCcceEEEECCEeh
Confidence            5889999999832      01125799999999999999999999999999999999998641   13689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .  ...++.++|++|++.+++.+|++||+.+....                   +             +||||||||++|
T Consensus        74 ~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~l  119 (192)
T cd03232          74 D--KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTI  119 (192)
T ss_pred             H--HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHH
Confidence            4  44567899999999999999999999874311                   0             899999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G  251 (612)
                      ||||+.+|+++++||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus       120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            99999999999999999999999999999999999878999999999986446789999999999 9999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=348.66  Aligned_cols=226  Identities=21%  Similarity=0.323  Sum_probs=188.9

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ..+...|+++|+++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|..+.+.+|+|.+
T Consensus        11 ~~~~~~l~~~~l~~~~----------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~   80 (265)
T PRK14252         11 SPTQQKSEVNKLNFYY----------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL   80 (265)
T ss_pred             cCCCceEEEEEEEEEE----------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence            3455679999999988          345799999999999999999999999999999999999875211136899999


Q ss_pred             CCEecc------chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHHcCCc----cccC
Q psy12625         95 NETRLQ------DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RKAKESKVDSIADSLSIS----TCKN  163 (612)
Q Consensus        95 ~g~~~~------~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~~  163 (612)
                      +|.++.      ....+++.++|++|++.+++. |++||+.+.....   ... +...++++++.++.+++.    +..+
T Consensus        81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~  156 (265)
T PRK14252         81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG  156 (265)
T ss_pred             cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence            997642      113456789999999998885 9999998765332   111 222345678888888874    4567


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|+
T Consensus       157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~  234 (265)
T PRK14252        157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY  234 (265)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE
Confidence            88999999999999999999999999999999999999999999999999976 689999999976 6788999999999


Q ss_pred             CCeEEEecCccCh
Q psy12625        244 EGYCTYQGTVPGL  256 (612)
Q Consensus       244 ~G~iv~~G~~~~~  256 (612)
                      +|+++..|+.++.
T Consensus       235 ~G~i~~~g~~~~~  247 (265)
T PRK14252        235 MGELIEFGATDTI  247 (265)
T ss_pred             CCEEEEeCCHHHH
Confidence            9999999987665

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.5e-42  Score=347.62  Aligned_cols=214  Identities=27%  Similarity=0.410  Sum_probs=175.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|.         +.+.+++|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~---------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   67 (229)
T cd03254           2 EIEFENVNFSYD---------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-----QKGQILIDGIDI   67 (229)
T ss_pred             eEEEEEEEEecC---------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEeH
Confidence            478999999872         134699999999999999999999999999999999999886     589999999886


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCCC
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHLS  170 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LS  170 (612)
                      ..  ...+++.++|++|++.+++. |++||+.+....     .......     ...++.++.+  |+++..++.+.+||
T Consensus        68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS  141 (229)
T cd03254          68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS  141 (229)
T ss_pred             HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC
Confidence            43  23456789999999988875 999999764211     1111111     1223444444  55556667789999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++. .+ ..||++++|++|++++.
T Consensus       142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~  218 (229)
T cd03254         142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEE  218 (229)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEe
Confidence            999999999999999999999999999999999999999999996 5899999999986 45 56999999999999998


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |+.++.
T Consensus       219 ~~~~~~  224 (229)
T cd03254         219 GTHDEL  224 (229)
T ss_pred             CCHHHH
Confidence            876554

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-43  Score=330.05  Aligned_cols=222  Identities=25%  Similarity=0.394  Sum_probs=200.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +++++||+++|          +.+.+|+++|.++++|.+++|+|||||||||||.+++.+.+.     ++|+|+++|.++
T Consensus         1 MI~i~nv~K~y----------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-----d~G~i~i~g~~~   65 (252)
T COG4604           1 MITIENVSKSY----------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-----DSGEITIDGLEL   65 (252)
T ss_pred             CeeehhhhHhh----------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-----cCceEEEeeeec
Confidence            46789999887          789999999999999999999999999999999999999884     789999999998


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      .+.  +.+.+.++..-|+......+||+|-+.|+..-.. .....++++..+++.++.++|++..|++..+||||||||.
T Consensus        66 ~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRA  144 (252)
T COG4604          66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRA  144 (252)
T ss_pred             ccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhh
Confidence            643  5677889999999999999999999999743222 2233466788999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      -||+.++.+.+.++||||.++||...+.++|+.|+++++ -|+||+++.||.+ ....++|+|+-|++|+++.+|+++++
T Consensus       145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei  223 (252)
T COG4604         145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI  223 (252)
T ss_pred             hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence            999999999999999999999999999999999999998 5999999999998 56889999999999999999999987


Q ss_pred             hh
Q psy12625        257 VP  258 (612)
Q Consensus       257 ~~  258 (612)
                      .+
T Consensus       224 i~  225 (252)
T COG4604         224 IQ  225 (252)
T ss_pred             cC
Confidence            64

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.5e-42  Score=341.56  Aligned_cols=192  Identities=28%  Similarity=0.354  Sum_probs=166.3

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++..   .       .+...+.+
T Consensus        33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----~~G~i~~~g~~~~~---~-------~~~~~~~~   97 (224)
T cd03220          33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----DSGTVTVRGRVSSL---L-------GLGGGFNP   97 (224)
T ss_pred             CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEchh---h-------cccccCCC
Confidence            667899999999999999999999999999999999999886     68999999987421   1       11233456


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD  200 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD  200 (612)
                      .+||+||+.+.....   .....+.+++++++++.+|+++..++.+++||||||||++|||+|+.+|++++|||||+|||
T Consensus        98 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD  174 (224)
T cd03220          98 ELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD  174 (224)
T ss_pred             CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            799999998865432   12334445678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       201 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      +.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus       175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            99999999999999877899999999976 577899999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3.5e-42  Score=342.82  Aligned_cols=206  Identities=29%  Similarity=0.471  Sum_probs=173.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|.        ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         2 ~l~~~~l~~~~~--------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~   68 (220)
T cd03245           2 RIEFRNVSFSYP--------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-----TSGSVLLDGTDI   68 (220)
T ss_pred             eEEEEEEEEEcC--------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCeEEECCEEh
Confidence            378899999872        1235699999999999999999999999999999999999876     689999999886


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----------
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT-----------  166 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------  166 (612)
                      ..  ....++.++|++|++.+++ .||.||+.+...     ...    ++.+.++++.+++.+..++.+           
T Consensus        69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  138 (220)
T cd03245          69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG  138 (220)
T ss_pred             HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence            42  2335678999999998887 699999876321     111    234567888888877666644           


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|+
T Consensus       139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~  215 (220)
T cd03245         139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGR  215 (220)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCe
Confidence            699999999999999999999999999999999999999999999999765 89999999986 44 7999999999999


Q ss_pred             EEEec
Q psy12625        247 CTYQG  251 (612)
Q Consensus       247 iv~~G  251 (612)
                      +++.|
T Consensus       216 i~~~~  220 (220)
T cd03245         216 IVADG  220 (220)
T ss_pred             EeecC
Confidence            98754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-41  Score=353.23  Aligned_cols=226  Identities=21%  Similarity=0.305  Sum_probs=187.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||++.|          +++.+|+++|+++++||+++|+|||||||||||++|+|+.+|....+.+|+|.++|.
T Consensus        43 ~~~l~i~nl~~~~----------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~  112 (305)
T PRK14264         43 DAKLSVEDLDVYY----------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ  112 (305)
T ss_pred             CceEEEEEEEEEe----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence            3469999999987          446799999999999999999999999999999999999863111136899999998


Q ss_pred             eccc----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC---------CCCC-HHHHHHHHHHHHHHcCCc----
Q psy12625         98 RLQD----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG---------NQYS-RKAKESKVDSIADSLSIS----  159 (612)
Q Consensus        98 ~~~~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~----  159 (612)
                      ++..    ....++.++|++|++.+++ .||+||+.+.......         .... ....+++++++++.+++.    
T Consensus       113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  191 (305)
T PRK14264        113 DIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN  191 (305)
T ss_pred             EcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence            8642    1345678999999998887 5999999986532100         0011 123356788999999884    


Q ss_pred             cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625        160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL  239 (612)
Q Consensus       160 ~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v  239 (612)
                      +..++.+.+||||||||++||+||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++. .+.++||++
T Consensus       192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~d~i  269 (305)
T PRK14264        192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQ-QAARISDQT  269 (305)
T ss_pred             HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhcCEE
Confidence            4568889999999999999999999999999999999999999999999999999874 89999999986 578899997


Q ss_pred             -eeecCCeEEEecCccCh
Q psy12625        240 -YVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       240 -~~L~~G~iv~~G~~~~~  256 (612)
                       ++|++|++++.|+++++
T Consensus       270 ~~~l~~G~i~~~g~~~~~  287 (305)
T PRK14264        270 AVFLTGGELVEYDDTDKI  287 (305)
T ss_pred             EEEecCCEEEEeCCHHHH
Confidence             57899999999987755

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=6e-42  Score=347.46  Aligned_cols=201  Identities=25%  Similarity=0.390  Sum_probs=176.9

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      +|+|+|+++++||+++|+||||||||||+++|+|+.+      .+|+|.++|+++..  ....++.++|++|++.+++.+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~------~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~   84 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM   84 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC------CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCc
Confidence            7999999999999999999999999999999999975      27999999998643  234456799999998888889


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh-------CCCEEEEeCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS-------NPSIIFLDEP  195 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~-------~p~illlDEP  195 (612)
                      |++||+.+....    ....++.+++++++++.+||.+..++.+++||||||||++||+||+.       +|++++||||
T Consensus        85 tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP  160 (248)
T PRK03695         85 PVFQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP  160 (248)
T ss_pred             cHHHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence            999999875321    12233345678999999999988999999999999999999999998       6799999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      |+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus       161 t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        161 MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999878999999999976 57899999999999999999987654

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.9e-41  Score=343.74  Aligned_cols=220  Identities=23%  Similarity=0.280  Sum_probs=181.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR   98 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~   98 (612)
                      |+++||++.|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.  +|     .+|+|.++|++
T Consensus         2 i~~~nl~~~~----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----~~G~i~~~g~~   66 (248)
T PRK09580          2 LSIKDLHVSV----------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----TGGTVEFKGKD   66 (248)
T ss_pred             eEEEEEEEEe----------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-----CceEEEECCCc
Confidence            7899999987          3467999999999999999999999999999999999995  34     68999999987


Q ss_pred             ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHH-hcc--CCC-CCHHHHHHHHHHHHHHcCCc-cccCcccC-CC
Q psy12625         99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAH-LKL--GNQ-YSRKAKESKVDSIADSLSIS-TCKNTLTK-HL  169 (612)
Q Consensus        99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~~--~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~L  169 (612)
                      +...  .. .++.++|++|++.+++.+|+.+++..... +..  ... ......++++++.++.+++. +..++.+. +|
T Consensus        67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L  146 (248)
T PRK09580         67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF  146 (248)
T ss_pred             cccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCC
Confidence            6432  22 23579999999998888888777654321 111  000 11223356778899999995 55677775 79


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv  248 (612)
                      |||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+... +|++++|++|+++
T Consensus       147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~  225 (248)
T PRK09580        147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIV  225 (248)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEE
Confidence            999999999999999999999999999999999999999999999888899999999976 45555 8999999999999


Q ss_pred             EecCccCh
Q psy12625        249 YQGTVPGL  256 (612)
Q Consensus       249 ~~G~~~~~  256 (612)
                      +.|+++.+
T Consensus       226 ~~g~~~~~  233 (248)
T PRK09580        226 KSGDFTLV  233 (248)
T ss_pred             EeCCHHHH
Confidence            99988744

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.1e-41  Score=381.72  Aligned_cols=228  Identities=25%  Similarity=0.360  Sum_probs=191.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|..      ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|....+.+|+|.++|+++
T Consensus         5 ~l~~~~l~~~~~~------~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i   78 (529)
T PRK15134          5 LLAIENLSVAFRQ------QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL   78 (529)
T ss_pred             eEEEeceEEEecC------CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence            5899999999831      0113579999999999999999999999999999999999998522223689999999986


Q ss_pred             cch--H---hhc-cceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc---ccCcccCC
Q psy12625        100 QDH--R---MLR-KESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST---CKNTLTKH  168 (612)
Q Consensus       100 ~~~--~---~~~-~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~  168 (612)
                      ...  .   ..+ +.+||++|++.  +++.+|++|++.+......  ..++.+.+++++++++.+||.+   ..++++++
T Consensus        79 ~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~  156 (529)
T PRK15134         79 LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ  156 (529)
T ss_pred             ccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence            432  1   223 57999999974  6677899999876533211  2334455678999999999976   35889999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||||||||+|||||+.+|++|+|||||+|||+.++..+.++|++++++ |+|||++|||+. .+.++||+|++|++|++
T Consensus       157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i  235 (529)
T PRK15134        157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRC  235 (529)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999875 899999999986 57789999999999999


Q ss_pred             EEecCccCh
Q psy12625        248 TYQGTVPGL  256 (612)
Q Consensus       248 v~~G~~~~~  256 (612)
                      ++.|+++++
T Consensus       236 ~~~g~~~~~  244 (529)
T PRK15134        236 VEQNRAATL  244 (529)
T ss_pred             EEeCCHHHH
Confidence            999988765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=9.3e-42  Score=381.60  Aligned_cols=220  Identities=27%  Similarity=0.374  Sum_probs=188.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEEC---
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEIN---   95 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~---   95 (612)
                      |+++|++++|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.  +|     .+|+|.++   
T Consensus         1 l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----~~G~i~~~~~~   65 (520)
T TIGR03269         1 IEVKNLTKKF----------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-----TSGRIIYHVAL   65 (520)
T ss_pred             CEEEEEEEEE----------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-----CceEEEEeccc
Confidence            4689999987          4567999999999999999999999999999999999996  44     68999997   


Q ss_pred             --------------------CEecc-------c--h---HhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCH
Q psy12625         96 --------------------ETRLQ-------D--H---RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSR  142 (612)
Q Consensus        96 --------------------g~~~~-------~--~---~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~  142 (612)
                                          |.++.       .  .   ...++.++|++|+ +.+++.+||+||+.+.....   ..+.
T Consensus        66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~  142 (520)
T TIGR03269        66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEG  142 (520)
T ss_pred             cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCH
Confidence                                22210       0  0   1245679999997 67888899999998865432   2334


Q ss_pred             HHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q psy12625        143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMI  221 (612)
Q Consensus       143 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv  221 (612)
                      ++.+++++++++.+||++..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+||
T Consensus       143 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv  222 (520)
T TIGR03269       143 KEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM  222 (520)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence            45567899999999999989999999999999999999999999999999999999999999999999999976 58999


Q ss_pred             EEEecCCchHHHhcccceeeecCCeEEEecCccChhhH
Q psy12625        222 ICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPY  259 (612)
Q Consensus       222 i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~  259 (612)
                      |+++||+. .+.++||++++|++|++++.|++++....
T Consensus       223 iivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  259 (520)
T TIGR03269       223 VLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV  259 (520)
T ss_pred             EEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence            99999986 57789999999999999999988776554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.1e-41  Score=333.86  Aligned_cols=196  Identities=28%  Similarity=0.365  Sum_probs=170.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (198)
T TIGR01189         1 LAARNLACSR----------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----DSGEVRWNGTALA   65 (198)
T ss_pred             CEEEEEEEEE----------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEEcc
Confidence            4678999887          456799999999999999999999999999999999999886     6899999999864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ..+++.++|++|++.+++.+|+.||+.+......     .  .+++++++++.+|+.+..++++++||||||||++|
T Consensus        66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  138 (198)
T TIGR01189        66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLAL  138 (198)
T ss_pred             cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHH
Confidence            32 3356789999999988888999999987643321     1  13467889999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      ||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++..   -.+|+++.
T Consensus       139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR  197 (198)
T ss_pred             HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence            999999999999999999999999999999999998889999999999853   34677664

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-41  Score=387.88  Aligned_cols=223  Identities=23%  Similarity=0.360  Sum_probs=190.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..      ..+.+++|+||||++++||+++|+||||||||||+|+|+|+++|     .+|+|.++|.++
T Consensus        12 ~l~v~~l~~~y~~------~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----~~G~i~~~g~~~   80 (623)
T PRK10261         12 VLAVENLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-----AGGLVQCDKMLL   80 (623)
T ss_pred             eEEEeceEEEecC------CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCeEEEECCEEe
Confidence            5999999999832      11235799999999999999999999999999999999999986     579999998643


Q ss_pred             c------------ch---Hhhc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625        100 Q------------DH---RMLR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-  160 (612)
Q Consensus       100 ~------------~~---~~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-  160 (612)
                      .            ..   ...+ +.+|||+|++  .+++.+||.||+.++.....  ..+..+.+++++++++.+||.+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~  158 (623)
T PRK10261         81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA  158 (623)
T ss_pred             ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence            1            11   1223 4799999998  67888999999998765421  2344556678999999999953 


Q ss_pred             --ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhccc
Q psy12625        161 --CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       161 --~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D  237 (612)
                        ..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++ |+|||++|||.. .+.++||
T Consensus       159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~ad  237 (623)
T PRK10261        159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIAD  237 (623)
T ss_pred             hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCC
Confidence              578999999999999999999999999999999999999999999999999999864 999999999976 6789999


Q ss_pred             ceeeecCCeEEEecCccCh
Q psy12625        238 YLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       238 ~v~~L~~G~iv~~G~~~~~  256 (612)
                      ||++|++|++++.|+++++
T Consensus       238 ri~vl~~G~i~~~g~~~~~  256 (623)
T PRK10261        238 RVLVMYQGEAVETGSVEQI  256 (623)
T ss_pred             EEEEeeCCeecccCCHHHh
Confidence            9999999999999988765

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-41  Score=335.44  Aligned_cols=199  Identities=28%  Similarity=0.388  Sum_probs=173.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         2 ~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   66 (207)
T PRK13539          2 MLEGEDLACVR----------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-----AAGTIKLDGGDI   66 (207)
T ss_pred             EEEEEeEEEEE----------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEeC
Confidence            58999999987          345799999999999999999999999999999999999876     689999999885


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      ... ..++.++|++|++.+++.+||+||+.+.....   ..    .+++++++++.+||.+..++++++||||||||++|
T Consensus        67 ~~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  138 (207)
T PRK13539         67 DDP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVAL  138 (207)
T ss_pred             cch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHH
Confidence            322 26778999999998888999999998754332   11    12457899999999988899999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      |++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++..  |+++.+..
T Consensus       139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~  200 (207)
T PRK13539        139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP  200 (207)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence            99999999999999999999999999999999999888999999999976 4444  88877743

>KOG0058|consensus

Probab=100.00  E-value=1.3e-42  Score=379.91  Aligned_cols=218  Identities=27%  Similarity=0.414  Sum_probs=185.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+|+||+|.|+..       .+.+||+|+||+++|||++||+||||+||||+.++|-.+++|     .+|+|.+||+
T Consensus       463 ~G~IeF~~VsFaYP~R-------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-----tsG~IllDG~  530 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTR-------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-----TSGRILLDGV  530 (716)
T ss_pred             cceEEEEEeeeecCCC-------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCCeEEECCe
Confidence            4579999999999652       467899999999999999999999999999999999999987     6899999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHcCCccccCcccC---
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSLSISTCKNTLTK---  167 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~~~---  167 (612)
                      |+.+.  ..+|++||+|.|+|.+|. -||+||+.|+..     ..++++.+     ..+.+.+..  +.+-.||.++   
T Consensus       531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG  602 (716)
T KOG0058|consen  531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG  602 (716)
T ss_pred             ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc
Confidence            98753  568999999999999997 699999999753     22333322     223334443  4445566665   


Q ss_pred             -CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 -HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 -~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                       +||||||||++|||||++||+||||||.||+||.++...+-+.|.++.+ ++|||++.|..+  ..+.+|+|+++++|+
T Consensus       603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~  679 (716)
T KOG0058|consen  603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGR  679 (716)
T ss_pred             ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCe
Confidence             6999999999999999999999999999999999999999999998875 499999999976  368999999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      +++.|+.+|+.+
T Consensus       680 V~E~G~h~eLl~  691 (716)
T KOG0058|consen  680 VVEMGTHDELLS  691 (716)
T ss_pred             EEecccHHHHhh
Confidence            999998887753

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-42  Score=311.17  Aligned_cols=218  Identities=27%  Similarity=0.403  Sum_probs=194.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|.++|+++.|          +..++|.||+++.+.||.+.++||||||||||+|.|.-+..|     .+|+..+.|...
T Consensus         2 sirv~~in~~y----------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-----~sg~l~ia~~~f   66 (242)
T COG4161           2 SIQLNGINCFY----------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-----RSGTLNIAGNHF   66 (242)
T ss_pred             ceEEccccccc----------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-----CCCeEEeccccc
Confidence            57889999887          778899999999999999999999999999999999988775     689999877543


Q ss_pred             c--c------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCCh
Q psy12625        100 Q--D------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG  171 (612)
Q Consensus       100 ~--~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg  171 (612)
                      .  +      ...+|+.+|+|+|+..++|.+||.||+.-+. .+. .+.++++.+.++.++++.+.|.+.+|+.+-.|||
T Consensus        67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsg  144 (242)
T COG4161          67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSG  144 (242)
T ss_pred             ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCceeccc
Confidence            1  1      1357899999999999999999999986543 221 1467788888999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||+|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|=+++||... .....+.+|+.|.+|++++.|
T Consensus       145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g  223 (242)
T COG4161         145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG  223 (242)
T ss_pred             chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence            9999999999999999999999999999999999999999999999999999999976 567889999999999999999


Q ss_pred             CccC
Q psy12625        252 TVPG  255 (612)
Q Consensus       252 ~~~~  255 (612)
                      +.+.
T Consensus       224 ~a~~  227 (242)
T COG4161         224 DASC  227 (242)
T ss_pred             chhh
Confidence            8763

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.3e-42  Score=390.06  Aligned_cols=211  Identities=24%  Similarity=0.351  Sum_probs=176.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||++.+.         +++++|+|+|++++|||.+||+||||||||||+++|+|++ |     .+|+|.+||.+
T Consensus       348 ~~i~~~~vsf~~~---------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-----~~G~I~i~g~~  412 (588)
T PRK11174        348 VTIEAEDLEILSP---------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-----YQGSLKINGIE  412 (588)
T ss_pred             ceEEEEeeEEecc---------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-----CCcEEEECCEe
Confidence            3699999997652         3467999999999999999999999999999999999998 6     47999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-----------CccccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-----------ISTCKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~  165 (612)
                      +.+  .+.+|+.++||+|++.+|+ .|++||+.++.    + +.++    ++++++++..+           ++....+.
T Consensus       413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~  482 (588)
T PRK11174        413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ  482 (588)
T ss_pred             cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence            764  3568899999999999997 59999998852    1 2333    23344444443           33333334


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|+|++||||||+||+.++..+.+.|+++. +++|+|+++|+++  ..+.||+|++|++|
T Consensus       483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G  559 (588)
T PRK11174        483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDG  559 (588)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCC
Confidence            45699999999999999999999999999999999999999999999885 5789999999985  46789999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+.+++.
T Consensus       560 ~i~e~G~~~eL~  571 (588)
T PRK11174        560 QIVQQGDYAELS  571 (588)
T ss_pred             eEeecCCHHHHH
Confidence            999999988765

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=4.6e-42  Score=345.64  Aligned_cols=214  Identities=28%  Similarity=0.414  Sum_probs=175.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|.         +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~---------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~v~~~g~~~~   66 (236)
T cd03253           1 IEFENVTFAYD---------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-----SSGSILIDGQDIR   66 (236)
T ss_pred             CEEEEEEEEeC---------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCEEEECCEEhh
Confidence            46889998872         135699999999999999999999999999999999999876     6899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCCCh
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHLSG  171 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSg  171 (612)
                      .  ...+++.++|++|++.+++ .||+||+.+...     ........     ..+.+.++.+  |+++..++.+.+|||
T Consensus        67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~  140 (236)
T cd03253          67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG  140 (236)
T ss_pred             hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence            3  2345678999999998886 699999977531     11111111     1233444444  556666777889999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. .+ ..||++++|++|+++..|
T Consensus       141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~g~i~~~~  217 (236)
T cd03253         141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKDGRIVERG  217 (236)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEeeC
Confidence            999999999999999999999999999999999999999999987 999999999986 45 459999999999999988


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      ++++..
T Consensus       218 ~~~~~~  223 (236)
T cd03253         218 THEELL  223 (236)
T ss_pred             CHHHHh
Confidence            876543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.1e-41  Score=381.69  Aligned_cols=230  Identities=22%  Similarity=0.297  Sum_probs=190.8

Q ss_pred             eEEEEeEEEEEEeecc-ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         20 NLLFQDISYSALYYDT-HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .|+++|+++.|..... ...+.+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+      .+|+|.++|++
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i~~~g~~  348 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQP  348 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEEEECCEE
Confidence            5999999998831000 0000023579999999999999999999999999999999999974      47999999988


Q ss_pred             ccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625         99 LQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus        99 ~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      +...     ..+++.++|++|++  .+++.+||+||+.++...... ..+..+.+++++++++.+||. +..++++++||
T Consensus       349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  427 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS  427 (529)
T ss_pred             ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence            6431     12356799999997  478889999999886533211 123344556789999999997 57899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|+++.
T Consensus       428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~  506 (529)
T PRK15134        428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVE  506 (529)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999874 899999999976 5788999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       507 ~~~~~~~~  514 (529)
T PRK15134        507 QGDCERVF  514 (529)
T ss_pred             EcCHHHHh
Confidence            99887653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.7e-41  Score=414.05  Aligned_cols=224  Identities=23%  Similarity=0.365  Sum_probs=200.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|..        +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|++
T Consensus       927 ~~L~I~nLsK~y~~--------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-----tsG~I~i~G~d  993 (2272)
T TIGR01257       927 PGVCVKNLVKIFEP--------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-----TSGTVLVGGKD  993 (2272)
T ss_pred             ceEEEEeEEEEecC--------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-----CceEEEECCEE
Confidence            47999999998821        346799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      +.. ....|+.+||++|++.+++.+||+||+.+.++++   ..+.++.+++++++++.+||++..++++++|||||||||
T Consensus       994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRL 1070 (2272)
T TIGR01257       994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL 1070 (2272)
T ss_pred             CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence            753 2446788999999999999999999999987664   233445567899999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +||+||+.+|++++|||||+|||+.+++.+.++|++++ +|+|||++||+++ ++..+|||+++|++|+++..|+++++.
T Consensus      1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257      1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred             HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999999999999999999995 5899999999986 678899999999999999999998876


Q ss_pred             hHH
Q psy12625        258 PYL  260 (612)
Q Consensus       258 ~~f  260 (612)
                      +.|
T Consensus      1149 ~~~ 1151 (2272)
T TIGR01257      1149 NCF 1151 (2272)
T ss_pred             Hhc
Confidence            644

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0055|consensus

Probab=100.00  E-value=8.8e-41  Score=384.09  Aligned_cols=220  Identities=29%  Similarity=0.428  Sum_probs=181.2

Q ss_pred             CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625         16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN   95 (612)
Q Consensus        16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~   95 (612)
                      .....++++||.|+|+.       ..+..||+|+|+.+++|+.+||+|||||||||++++|.+++.|     .+|+|.+|
T Consensus       346 ~~~g~ief~nV~FsYPs-------Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-----~~G~V~id  413 (1228)
T KOG0055|consen  346 SIKGEIEFRNVCFSYPS-------RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-----TSGEVLID  413 (1228)
T ss_pred             ccccceEEEEEEecCCC-------CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCceEEEc
Confidence            34568999999999964       1356899999999999999999999999999999999999987     68999999


Q ss_pred             CEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccC-
Q psy12625         96 ETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTK-  167 (612)
Q Consensus        96 g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~-  167 (612)
                      |.++.+.  +.+|.+||.|.|+|.+|. .|++||+.|+..     +.++++.++     .+.+.+..  |.+-.|+.++ 
T Consensus       414 G~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge  485 (1228)
T KOG0055|consen  414 GEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKP-----DATREEIEEAAKAANAHDFILK--LPDGYDTLVGE  485 (1228)
T ss_pred             CccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHHh--hHHhhcccccC
Confidence            9998653  668999999999998886 799999988531     122222111     12222222  2333444444 


Q ss_pred             ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                         +||||||||++|||||+.||+|||||||||+||+.+...+.+.|++.. +|+|.|+++|+.+ .+ +-+|++++|++
T Consensus       486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~  562 (1228)
T KOG0055|consen  486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE  562 (1228)
T ss_pred             CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC
Confidence               599999999999999999999999999999999999999999998865 5789999999986 45 55999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |++++.|+++|+..
T Consensus       563 G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  563 GKIVEQGTHDELIA  576 (1228)
T ss_pred             CEEEEecCHHHHHh
Confidence            99999999998865

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.6e-41  Score=325.69  Aligned_cols=172  Identities=33%  Similarity=0.542  Sum_probs=155.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|++++|          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (173)
T cd03230           1 IEVRNLSKRY----------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----DSGEIKVLGKDIK   65 (173)
T ss_pred             CEEEEEEEEE----------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEEcc
Confidence            4689999887          335699999999999999999999999999999999999876     5899999999864


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      +. ..+++.++|++|++.+++.+|+.||+.                                       ||||||||++|
T Consensus        66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~l  106 (173)
T cd03230          66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLAL  106 (173)
T ss_pred             cchHhhhccEEEEecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHH
Confidence            32 345678999999999999899999973                                       99999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      ||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+.+|++++|++|++
T Consensus       107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI  173 (173)
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence            99999999999999999999999999999999999888899999999976 57789999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1e-41  Score=349.70  Aligned_cols=211  Identities=21%  Similarity=0.312  Sum_probs=182.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++.|..        +.+.+|+|+|++|++||+++|+||||||||||+++|+|+.+      .+|+|.++|.++
T Consensus         2 ~i~~~nls~~~~~--------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i   67 (275)
T cd03289           2 QMTVKDLTAKYTE--------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSW   67 (275)
T ss_pred             eEEEEEEEEEeCC--------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEh
Confidence            4789999999832        34569999999999999999999999999999999999986      369999999987


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC---------
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH---------  168 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~---------  168 (612)
                      ..  ...+++.++|++|++.+++ .|++||+....      ..+    .+++.+.++.+||.+..++.+++         
T Consensus        68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g  136 (275)
T cd03289          68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG  136 (275)
T ss_pred             hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence            43  2456789999999999997 59999995321      112    23567888999998888887776         


Q ss_pred             --CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        169 --LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       169 --LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                        ||||||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||++|++|+
T Consensus       137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~  213 (275)
T cd03289         137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENK  213 (275)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCe
Confidence              99999999999999999999999999999999999999999999875 5899999999985 454 599999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      +++.|+++++..
T Consensus       214 i~~~g~~~~l~~  225 (275)
T cd03289         214 VRQYDSIQKLLN  225 (275)
T ss_pred             EeecCCHHHHhh
Confidence            999999988754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-41  Score=377.98  Aligned_cols=225  Identities=23%  Similarity=0.287  Sum_probs=190.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|..       .+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|    +.+|+|.++|+++
T Consensus       259 ~l~~~~l~~~~~~-------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~----~~~G~i~~~g~~~  327 (506)
T PRK13549        259 ILEVRNLTAWDPV-------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG----RWEGEIFIDGKPV  327 (506)
T ss_pred             eEEEecCcccccc-------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCcEEEECCEEC
Confidence            5899999987621       1235699999999999999999999999999999999999873    2589999999886


Q ss_pred             cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHcCCc-cccCcccCCCC
Q psy12625        100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDSIADSLSIS-TCKNTLTKHLS  170 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS  170 (612)
                      ...   ...++.++|++|++   .+++.+||.||+.+........  ..++++.+++++++++.+|+. +..++++++||
T Consensus       328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  407 (506)
T PRK13549        328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLS  407 (506)
T ss_pred             CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence            421   23456799999995   4788899999998753211100  112334456789999999996 57899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||++++|++|+++..
T Consensus       408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~  486 (506)
T PRK13549        408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD  486 (506)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999888999999999986 67899999999999999999


Q ss_pred             cCccCh
Q psy12625        251 GTVPGL  256 (612)
Q Consensus       251 G~~~~~  256 (612)
                      |+++++
T Consensus       487 ~~~~~~  492 (506)
T PRK13549        487 LINHNL  492 (506)
T ss_pred             eccccC
Confidence            988775

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.9e-41  Score=337.82  Aligned_cols=206  Identities=25%  Similarity=0.307  Sum_probs=172.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|+++++..        +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   68 (221)
T cd03244           2 DIEFKNVSLRYRP--------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-----SSGSILIDGVDI   68 (221)
T ss_pred             cEEEEEEEEecCC--------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCCEEEECCEEh
Confidence            4789999998731        335799999999999999999999999999999999999876     689999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCccc
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLT  166 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~  166 (612)
                      ..  ...+++.++|++|++.+++ .||+||+.+..      ...    .+++.+.++.+++.+.           .++.+
T Consensus        69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~  137 (221)
T cd03244          69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGG  137 (221)
T ss_pred             HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence            43  2346778999999998776 69999986421      111    2234555666665543           35678


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+. .||++++|++|+
T Consensus       138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~  214 (221)
T cd03244         138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGR  214 (221)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCe
Confidence            89999999999999999999999999999999999999999999999864 689999999986 454 599999999999


Q ss_pred             EEEecC
Q psy12625        247 CTYQGT  252 (612)
Q Consensus       247 iv~~G~  252 (612)
                      +++.|+
T Consensus       215 ~~~~~~  220 (221)
T cd03244         215 VVEFDS  220 (221)
T ss_pred             EEecCC
Confidence            998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3e-41  Score=377.54  Aligned_cols=224  Identities=21%  Similarity=0.276  Sum_probs=188.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC-CE
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN-ET   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~-g~   97 (612)
                      ..|+++||++.|...     +.+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++ |.
T Consensus       278 ~~l~~~~l~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~g~  347 (520)
T TIGR03269       278 PIIKVRNVSKRYISV-----DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-----TSGEVNVRVGD  347 (520)
T ss_pred             ceEEEeccEEEeccC-----CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEEecCC
Confidence            369999999988310     01235699999999999999999999999999999999999886     58999996 53


Q ss_pred             e---ccc-----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----ccCc
Q psy12625         98 R---LQD-----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----CKNT  164 (612)
Q Consensus        98 ~---~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~  164 (612)
                      +   +..     ....++.++|++|++.+++.+||+||+.+...+.    .+++..+++++++++.+||.+     ..++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  423 (520)
T TIGR03269       348 EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK  423 (520)
T ss_pred             ccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC
Confidence            2   111     1134567999999999999999999998754321    223334567889999999975     5789


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+.++||++++|+
T Consensus       424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~  502 (520)
T TIGR03269       424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR  502 (520)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence            9999999999999999999999999999999999999999999999999986 4899999999986 6788999999999


Q ss_pred             CCeEEEecCccChh
Q psy12625        244 EGYCTYQGTVPGLV  257 (612)
Q Consensus       244 ~G~iv~~G~~~~~~  257 (612)
                      +|+++..|+++++.
T Consensus       503 ~G~i~~~g~~~~~~  516 (520)
T TIGR03269       503 DGKIVKIGDPEEIV  516 (520)
T ss_pred             CCEEEEECCHHHHH
Confidence            99999999877653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-41  Score=330.51  Aligned_cols=195  Identities=24%  Similarity=0.375  Sum_probs=170.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++++          +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~~----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~v~~~g~~~~   66 (200)
T PRK13540          2 LDVIELDFDY----------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-----EKGEILFERQSIK   66 (200)
T ss_pred             EEEEEEEEEe----------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeeEEECCCccc
Confidence            7899999987          446799999999999999999999999999999999999886     6899999998864


Q ss_pred             c-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 D-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      . ...+++.++|++|++.+++.+||+||+.+.....      .  .+.+++++++.+++.+..++++++||||||||++|
T Consensus        67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~l  138 (200)
T PRK13540         67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVAL  138 (200)
T ss_pred             cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHH
Confidence            3 2446778999999998888999999998764211      1  12468899999999888899999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      ||+++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++..  .+.+|...
T Consensus       139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~  197 (200)
T PRK13540        139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE  197 (200)
T ss_pred             HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence            999999999999999999999999999999999998789999999999753  56677544

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=4.3e-41  Score=335.99  Aligned_cols=210  Identities=26%  Similarity=0.329  Sum_probs=174.1

Q ss_pred             EEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC--CE
Q psy12625         21 LLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ET   97 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~--g~   97 (612)
                      |+++|+++.|...    .+.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|     .+|+|.++  |+
T Consensus         2 l~~~~l~~~~~~~----~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~~~g~   72 (224)
T TIGR02324         2 LEVEDLSKTFTLH----QQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----DSGRILVRHEGA   72 (224)
T ss_pred             EEEEeeEEEeecc----cCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEEecCCC
Confidence            7899999988320    0001 25799999999999999999999999999999999999886     57999998  42


Q ss_pred             --eccc--hH---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCC
Q psy12625         98 --RLQD--HR---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKH  168 (612)
Q Consensus        98 --~~~~--~~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~  168 (612)
                        ++..  ..   .. ++.++|++|++.+++.+||+|++.+.....   ...+...++++.++++.+|+.+ ..++++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  149 (224)
T TIGR02324        73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPAT  149 (224)
T ss_pred             ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCccc
Confidence              3321  11   12 357999999999999999999998754322   2233344567889999999986 45889999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||+++.+.
T Consensus       150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~  223 (224)
T TIGR02324       150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT  223 (224)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence            9999999999999999999999999999999999999999999999878999999999964 5667999998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.4e-41  Score=361.81  Aligned_cols=223  Identities=26%  Similarity=0.324  Sum_probs=200.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|++|+|          +..++|+||||++++||++||+|.||||||||+|+|+|.++|     ++|+|.+||+
T Consensus         6 ~~ll~~~~i~K~F----------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-----~~G~I~~~G~   70 (500)
T COG1129           6 PPLLELRGISKSF----------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----DSGEILIDGK   70 (500)
T ss_pred             cceeeeecceEEc----------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-----CCceEEECCE
Confidence            3468999999998          678899999999999999999999999999999999999986     6899999999


Q ss_pred             ecc--ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625         98 RLQ--DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL-GNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        98 ~~~--~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      +..  ++ ......|+.|+|+..+.|++||.||+.++..... ..-++.+..++++.++|+.+|+....++++++||+||
T Consensus        71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaq  150 (500)
T COG1129          71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQ  150 (500)
T ss_pred             EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHH
Confidence            864  22 4456789999999999999999999988755433 1235567778889999999999656899999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||.|+|||||..+++|++||||||.|+......+.+.+++|+++|.+||++||... +++++|||+.+|+||+.+..++.
T Consensus       151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeeccc
Confidence            99999999999999999999999999999999999999999999999999999976 79999999999999999999883


Q ss_pred             -cCh
Q psy12625        254 -PGL  256 (612)
Q Consensus       254 -~~~  256 (612)
                       ++.
T Consensus       230 ~~~~  233 (500)
T COG1129         230 AAET  233 (500)
T ss_pred             ccCC
Confidence             543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-41  Score=376.74  Aligned_cols=218  Identities=22%  Similarity=0.369  Sum_probs=185.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.+          +  .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|++
T Consensus       264 ~~l~~~~l~~~~----------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~g~~  326 (510)
T PRK09700        264 TVFEVRNVTSRD----------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-----AGGEIRLNGKD  326 (510)
T ss_pred             cEEEEeCccccC----------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----CCCeEEECCEE
Confidence            369999998643          2  389999999999999999999999999999999999886     58999999988


Q ss_pred             ccch---HhhccceEEEccC---CCCCCCCCHHHHHHHHHHhc---cCC--C-CCHHHHHHHHHHHHHHcCCc-cccCcc
Q psy12625         99 LQDH---RMLRKESCYIMQD---NLLQELLTVEESLTVAAHLK---LGN--Q-YSRKAKESKVDSIADSLSIS-TCKNTL  165 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~  165 (612)
                      +...   ...++.++|++|+   ..+++.+||+||+.+....+   ...  . ......+++++++++.+|+. +..+++
T Consensus       327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  406 (510)
T PRK09700        327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN  406 (510)
T ss_pred             CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc
Confidence            6431   2345689999998   46888999999998753211   000  0 12223345688999999997 788999


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +++|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|
T Consensus       407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G  485 (510)
T PRK09700        407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG  485 (510)
T ss_pred             cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999888999999999986 678999999999999


Q ss_pred             eEEEecCcc
Q psy12625        246 YCTYQGTVP  254 (612)
Q Consensus       246 ~iv~~G~~~  254 (612)
                      +++..++..
T Consensus       486 ~i~~~~~~~  494 (510)
T PRK09700        486 RLTQILTNR  494 (510)
T ss_pred             EEEEEecCc
Confidence            999988763

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=3.8e-41  Score=341.95  Aligned_cols=201  Identities=24%  Similarity=0.386  Sum_probs=175.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.  
T Consensus         4 ~l~~~~l~~~~----------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~~~--   66 (251)
T PRK09544          4 LVSLENVSVSF----------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----DEGVIKRNGK--   66 (251)
T ss_pred             EEEEeceEEEE----------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCc--
Confidence            58999999987          446799999999999999999999999999999999999886     6899999862  


Q ss_pred             cchHhhccceEEEccCCCCCCCC--CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELL--TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~l--Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                             ..++|++|++.+++.+  |+.+++.+.      ...    .++++.++++.+|+.+..++++.+||||||||+
T Consensus        67 -------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv  129 (251)
T PRK09544         67 -------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRV  129 (251)
T ss_pred             -------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH
Confidence                   3599999998877754  777766431      111    134578899999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++ +++..|+++++
T Consensus       130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            9999999999999999999999999999999999999875 899999999986 67889999999965 78999988765

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.2e-41  Score=340.45  Aligned_cols=214  Identities=24%  Similarity=0.390  Sum_probs=175.5

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|+++.|..       .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+
T Consensus         9 ~~~l~~~~l~~~~~~-------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~   76 (226)
T cd03248           9 KGIVKFQNVTFAYPT-------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-----QGGQVLLDGK   76 (226)
T ss_pred             CceEEEEEEEEEeCC-------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCcEEEECCC
Confidence            446999999999831       1124699999999999999999999999999999999999886     6899999998


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc--CCccccCcccCCCChhh
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGe  173 (612)
                      ++..  ....++.++|++|++.+++ .||+||+.+...........+...+..++++++.+  |+++..++++.+|||||
T Consensus        77 ~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~  155 (226)
T cd03248          77 PISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ  155 (226)
T ss_pred             chHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence            7632  2345678999999998876 69999997653211000000111122357888888  88888899999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+ ..||++++|++|++
T Consensus       156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i  226 (226)
T cd03248         156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence            9999999999999999999999999999999999999999875 689999999986 45 45999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-42  Score=366.85  Aligned_cols=215  Identities=29%  Similarity=0.431  Sum_probs=185.3

Q ss_pred             CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625         16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN   95 (612)
Q Consensus        16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~   95 (612)
                      .+++.++.+|+++.|+.        + +++++|+|+++++|+.+||+|+||||||||+++|+|+.+|     ++|+|.+|
T Consensus       316 ~~~~ei~~~~l~~~y~~--------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-----~~G~I~vn  381 (559)
T COG4988         316 EPPIEISLENLSFRYPD--------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-----TQGEIRVN  381 (559)
T ss_pred             CCCceeeecceEEecCC--------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-----CCceEEEC
Confidence            34667778899999842        3 3899999999999999999999999999999999999986     68999999


Q ss_pred             CEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC------cccC
Q psy12625         96 ETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN------TLTK  167 (612)
Q Consensus        96 g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------~~~~  167 (612)
                      |.+..+.  ..++++++||+|+|.+++ -|++||+.++..     .    ..++.+.+++++.|+.+..+      +.++
T Consensus       382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~----~s~e~i~~al~~a~l~~~v~~p~GLdt~ig  451 (559)
T COG4988         382 GIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----D----ASDEEIIAALDQAGLLEFVPKPDGLDTVIG  451 (559)
T ss_pred             CccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----c----CCHHHHHHHHHHhcHHHhhcCCCcccchhc
Confidence            9987653  678999999999999987 699999987521     1    12456777777777765443      3343


Q ss_pred             ----CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        168 ----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       168 ----~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                          +|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.+++++ +|++++||++.  ...-+|+|++|+
T Consensus       452 e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld  528 (559)
T COG4988         452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLD  528 (559)
T ss_pred             cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEec
Confidence                49999999999999999999999999999999999999999999999875 89999999975  367899999999


Q ss_pred             CCeEEEecCccChh
Q psy12625        244 EGYCTYQGTVPGLV  257 (612)
Q Consensus       244 ~G~iv~~G~~~~~~  257 (612)
                      +|+++..|.++++.
T Consensus       529 ~G~l~~~g~~~~L~  542 (559)
T COG4988         529 NGRLVEQGTHEELS  542 (559)
T ss_pred             CCceeccCCHHHHh
Confidence            99999999998874

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-40  Score=339.38  Aligned_cols=220  Identities=20%  Similarity=0.246  Sum_probs=187.6

Q ss_pred             eeEEEEeEEEEEEeeccc---------cc-cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc
Q psy12625         19 FNLLFQDISYSALYYDTH---------SY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN   88 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~---------~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~   88 (612)
                      +.|+++||++.|......         .+ ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----~   77 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-----T   77 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----C
Confidence            578999999999764210         01 22456799999999999999999999999999999999999886     6


Q ss_pred             eeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625         89 SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH  168 (612)
Q Consensus        89 ~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~  168 (612)
                      +|+|.++|+           +++++|+..+.+.+|+.||+.+.....   ..+.++..+.++++++.+++.+..++.+++
T Consensus        78 ~G~I~~~g~-----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  143 (264)
T PRK13546         78 VGKVDRNGE-----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKK  143 (264)
T ss_pred             ceEEEECCE-----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence            899999985           346677777778899999998764332   223344455678889999999999999999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++|+++
T Consensus       144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~  222 (264)
T PRK13546        144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK  222 (264)
T ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999878999999999975 577899999999999999


Q ss_pred             EecCccChhh
Q psy12625        249 YQGTVPGLVP  258 (612)
Q Consensus       249 ~~G~~~~~~~  258 (612)
                      ..|+++++.+
T Consensus       223 ~~g~~~~~~~  232 (264)
T PRK13546        223 DYGELDDVLP  232 (264)
T ss_pred             EeCCHHHHHH
Confidence            9998876644

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=5.3e-41  Score=326.89  Aligned_cols=181  Identities=27%  Similarity=0.387  Sum_probs=157.1

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc----hHhhccceEEEccCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD----HRMLRKESCYIMQDN  116 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~----~~~~~~~i~yv~Q~~  116 (612)
                      +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++..    ...+++.++|++|++
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   77 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-----QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP   77 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence            346799999999999999999999999999999999999886     68999999998631    124567899999997


Q ss_pred             C-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625        117 L-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP  195 (612)
Q Consensus       117 ~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP  195 (612)
                      . .+...||+||+.+.....   ..+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|++++||||
T Consensus        78 ~~~~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  154 (190)
T TIGR01166        78 DDQLFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP  154 (190)
T ss_pred             hhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            3 233479999998865432   223344556789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        196 TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      |+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus       155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            9999999999999999999888999999999975

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-41  Score=392.25  Aligned_cols=210  Identities=28%  Similarity=0.387  Sum_probs=180.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+|+|+.        .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|     .+|+|.+||++
T Consensus       450 ~~I~~~nvsf~Y~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~  516 (686)
T TIGR03797       450 GAIEVDRVTFRYRP--------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-----ESGSVFYDGQD  516 (686)
T ss_pred             ceEEEEEEEEEcCC--------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCEEEECCEE
Confidence            36999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~---  166 (612)
                      +.+  ...+|+.+|||+|++.+|+ -|++||+.++..      .+    ++++.++++..|+.+..       |+.+   
T Consensus       517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~  585 (686)
T TIGR03797       517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG  585 (686)
T ss_pred             cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence            864  3678999999999999987 599999987421      12    34466667777665432       3333   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+++|++++||||||+||+.+.+++.+.|+++   ++|+|+++|+++  ..+.+|+|++|++|
T Consensus       586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G  660 (686)
T TIGR03797       586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAG  660 (686)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECC
Confidence             469999999999999999999999999999999999999999999886   579999999985  46789999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+.+++.
T Consensus       661 ~iv~~G~~~~Ll  672 (686)
T TIGR03797       661 RVVQQGTYDELM  672 (686)
T ss_pred             EEEEECCHHHHH
Confidence            999999988764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=2.1e-41  Score=380.67  Aligned_cols=218  Identities=27%  Similarity=0.394  Sum_probs=184.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++|++++|+.        +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       315 ~~i~~~~v~~~y~~--------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~  381 (544)
T TIGR01842       315 GHLSVENVTIVPPG--------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-----TSGSVRLDGAD  381 (544)
T ss_pred             CeEEEEEEEEEcCC--------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEe
Confidence            46999999999832        346799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +.+  ...+++.++||+|++.+++. |++||+.+..     ...++++.     ....++.++.+  |++...++...+|
T Consensus       382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L  455 (544)
T TIGR01842       382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL  455 (544)
T ss_pred             hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCC
Confidence            754  35678899999999999985 9999997532     11222221     12245566666  6666666777889


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+++|++++|||||||||+.++.++.+.|+++.++|+|+|+++|+++  ..+.||++++|++|++++
T Consensus       456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~  533 (544)
T TIGR01842       456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIAR  533 (544)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999998767899999999985  357899999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+.+++.
T Consensus       534 ~g~~~~l~  541 (544)
T TIGR01842       534 FGERDEVL  541 (544)
T ss_pred             eCCHHHHh
Confidence            99887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=5.2e-41  Score=329.72  Aligned_cols=190  Identities=25%  Similarity=0.335  Sum_probs=162.9

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeEEEECCEe
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGYIEINETR   98 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~I~~~g~~   98 (612)
                      ++++|+++.|          +++.+++|+|+++++||+++|+||||||||||+++|+|+.  +|     .+|+|.++|++
T Consensus         1 l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----~~G~i~~~g~~   65 (200)
T cd03217           1 LEIKDLHVSV----------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-----TEGEILFKGED   65 (200)
T ss_pred             CeEEEEEEEe----------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----CccEEEECCEE
Confidence            4689999887          3457999999999999999999999999999999999995  43     68999999998


Q ss_pred             ccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 LQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +.+.  .. .++.++|++|++.+++..|+++++                                  ++...+|||||||
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~q  111 (200)
T cd03217          66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKK  111 (200)
T ss_pred             CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhccccCCHHHHH
Confidence            7542  22 245699999999888888888766                                  1122579999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-cccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN-MADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ .+|++++|++|++++.|+.+
T Consensus       112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH
Confidence            999999999999999999999999999999999999999877899999999986 5555 79999999999999999444


Q ss_pred             ChhhHHh
Q psy12625        255 GLVPYLS  261 (612)
Q Consensus       255 ~~~~~f~  261 (612)
                       +..++.
T Consensus       191 -~~~~~~  196 (200)
T cd03217         191 -LALEIE  196 (200)
T ss_pred             -HHhhhc
Confidence             544443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=3.6e-41  Score=324.77  Aligned_cols=173  Identities=35%  Similarity=0.551  Sum_probs=156.0

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~   65 (178)
T cd03229           1 LELKNVSKRY----------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----DSGSILIDGEDLT   65 (178)
T ss_pred             CEEEEEEEEE----------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEEcc
Confidence            4689999887          346799999999999999999999999999999999999886     6899999998864


Q ss_pred             c----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        101 D----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       101 ~----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      +    ....++.++|++|++.+++.+|++||+.+.                                     ||||||||
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr  108 (178)
T cd03229          66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQR  108 (178)
T ss_pred             ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHH
Confidence            3    234567899999999999889999987542                                     99999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|++|+
T Consensus       109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~  178 (178)
T cd03229         109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK  178 (178)
T ss_pred             HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence            99999999999999999999999999999999999999886 899999999975 5777999999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.3e-41  Score=375.82  Aligned_cols=210  Identities=21%  Similarity=0.267  Sum_probs=182.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++|++++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|.++
T Consensus         3 ~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-----~~G~i~~~~~~~   67 (490)
T PRK10938          3 SLQISQGTFRL----------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-----LSGERQSQFSHI   67 (490)
T ss_pred             eEEEEeEEEEc----------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCceEEECCccc
Confidence            58999999988          445699999999999999999999999999999999999886     689999999765


Q ss_pred             cc--hHhhccceEEEccCCCC--C------CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625        100 QD--HRMLRKESCYIMQDNLL--Q------ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      ..  ....++.++|++|++..  +      ..+||+|++.+.           ...+++++++++.+||++..++++++|
T Consensus        68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~L  136 (490)
T PRK10938         68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYL  136 (490)
T ss_pred             ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccC
Confidence            32  23345679999998643  1      146888876431           123457889999999999999999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++.
T Consensus       137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~  215 (490)
T PRK10938        137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE  215 (490)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999888999999999986 6789999999999999999


Q ss_pred             ecCccCh
Q psy12625        250 QGTVPGL  256 (612)
Q Consensus       250 ~G~~~~~  256 (612)
                      .|++++.
T Consensus       216 ~~~~~~~  222 (490)
T PRK10938        216 TGEREEI  222 (490)
T ss_pred             eCCHHHH
Confidence            9987754

>KOG0057|consensus

Probab=100.00  E-value=1.1e-41  Score=360.78  Aligned_cols=216  Identities=26%  Similarity=0.361  Sum_probs=182.8

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ..++-.|+|+||++.|.         .+++||+++||+|++||-+||+|+|||||||++|+|.++..      .+|+|.+
T Consensus       346 ~~~~~~I~F~dV~f~y~---------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~I  410 (591)
T KOG0057|consen  346 ELFGGSIEFDDVHFSYG---------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILI  410 (591)
T ss_pred             ccCCCcEEEEeeEEEeC---------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEE
Confidence            34455699999999982         23459999999999999999999999999999999999976      5899999


Q ss_pred             CCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc--------
Q psy12625         95 NETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT--------  164 (612)
Q Consensus        95 ~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--------  164 (612)
                      ||+++.+  .+.+|+.|||||||..+|. -||.+|+.++..     ..+    .++|.++.+..|+.+.-.+        
T Consensus       411 dG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~-----sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~  480 (591)
T KOG0057|consen  411 DGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP-----SAS----DEEVVEACKRAGLHDVISRLPDGYQTL  480 (591)
T ss_pred             CCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC-----CcC----HHHHHHHHHHcCcHHHHHhccccchhh
Confidence            9999864  3678999999999999987 699999988632     122    3345566666666543322        


Q ss_pred             ---ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        165 ---LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       165 ---~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                         +...|||||||||+||||++.||+|+++|||||.||..+..++++.+.+ ...++|+|++.|+.+  ...-||+|++
T Consensus       481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~  557 (591)
T KOG0057|consen  481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIV  557 (591)
T ss_pred             HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEE
Confidence               2335999999999999999999999999999999999999999999999 346899999999975  5789999999


Q ss_pred             ecCCeEEEecCccChhh
Q psy12625        242 LTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       242 L~~G~iv~~G~~~~~~~  258 (612)
                      |++|++...|+.+++..
T Consensus       558 l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  558 LDNGTVKEYGTHSELLA  574 (591)
T ss_pred             EECCeeEEeccHHHHhh
Confidence            99999999999998865

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.7e-41  Score=383.43  Aligned_cols=217  Identities=32%  Similarity=0.443  Sum_probs=182.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|+         +++++|+|+|+++++||.+||+||||||||||+++|.|+.+|     .+|+|.+||.+
T Consensus       327 ~~I~f~~vsf~y~---------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----~~G~I~idg~d  392 (567)
T COG1132         327 GSIEFENVSFSYP---------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-----TSGEILIDGID  392 (567)
T ss_pred             CeEEEEEEEEEcC---------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCeEEECCEe
Confidence            4699999999982         257899999999999999999999999999999999999986     68999999999


Q ss_pred             ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +.+.  ..+|+.++||+|++.+|. -||+||+.++..     +.++++..+     .+.+.++.+  |++...+....+|
T Consensus       393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L  466 (567)
T COG1132         393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL  466 (567)
T ss_pred             hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence            8653  678999999999999998 899999998632     123332222     234445554  4444444444579


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++||||++.+|++++||||||+||+.+...+.+.++++. +++|+++++|.++ .+ +.+|+|++|++|++++
T Consensus       467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e  543 (567)
T COG1132         467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVE  543 (567)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999887 5679999999986 34 4599999999999999


Q ss_pred             ecCccChhh
Q psy12625        250 QGTVPGLVP  258 (612)
Q Consensus       250 ~G~~~~~~~  258 (612)
                      .|+++++..
T Consensus       544 ~G~h~eLl~  552 (567)
T COG1132         544 RGTHEELLA  552 (567)
T ss_pred             ecCHHHHHH
Confidence            999998765

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.3e-41  Score=393.98  Aligned_cols=212  Identities=27%  Similarity=0.343  Sum_probs=178.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+|+|+.        .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|     .+|+|.+||.+
T Consensus       476 ~~I~~~~vsf~y~~--------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~  542 (710)
T TIGR03796       476 GYVELRNITFGYSP--------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----WSGEILFDGIP  542 (710)
T ss_pred             CeEEEEEEEEecCC--------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEe
Confidence            46999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~  165 (612)
                      +.+  ...+|+.++||+|++.+|+ .|++||+.++.    + ..+    ++++.++++..|+.+           .....
T Consensus       543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~  612 (710)
T TIGR03796       543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG  612 (710)
T ss_pred             HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence            754  3568999999999999986 69999998641    1 222    233445555555443           22333


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|++++||||||+||+.+..++.+.|++   .++|+|+++|+++  ....||+|++|++|
T Consensus       613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G  687 (710)
T TIGR03796       613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERG  687 (710)
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCC
Confidence            456999999999999999999999999999999999999999999976   4799999999985  35779999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+.+++.+
T Consensus       688 ~i~~~G~~~~Ll~  700 (710)
T TIGR03796       688 KVVQRGTHEELWA  700 (710)
T ss_pred             EEEEecCHHHHHH
Confidence            9999999887754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.5e-41  Score=373.17  Aligned_cols=225  Identities=22%  Similarity=0.298  Sum_probs=189.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|..       .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|    +.+|+|.++|++
T Consensus       256 ~~l~~~~l~~~~~~-------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----~~~G~i~~~g~~  324 (500)
T TIGR02633       256 VILEARNLTCWDVI-------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----KFEGNVFINGKP  324 (500)
T ss_pred             ceEEEeCCcccccc-------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----CCCeEEEECCEE
Confidence            36999999987511       0235699999999999999999999999999999999999874    257999999988


Q ss_pred             ccc--h-HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCC
Q psy12625         99 LQD--H-RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIADSLSIST-CKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~-~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~L  169 (612)
                      +..  . ...++.++|++|+.   .+++.+||+||+.++..-...  ........+++++++++.+|+.+ ..++++++|
T Consensus       325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  404 (500)
T TIGR02633       325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL  404 (500)
T ss_pred             CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence            642  1 34567899999995   588899999999875321110  01223334567899999999974 679999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++.
T Consensus       405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~  483 (500)
T TIGR02633       405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKG  483 (500)
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999999888999999999986 6889999999999999998


Q ss_pred             ecCccC
Q psy12625        250 QGTVPG  255 (612)
Q Consensus       250 ~G~~~~  255 (612)
                      .++.++
T Consensus       484 ~~~~~~  489 (500)
T TIGR02633       484 DFVNHA  489 (500)
T ss_pred             EEcccc
Confidence            876654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=3.1e-41  Score=382.61  Aligned_cols=214  Identities=25%  Similarity=0.375  Sum_probs=180.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+|+|+.        +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       340 ~~i~~~~vsf~y~~--------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g~~  406 (582)
T PRK11176        340 GDIEFRNVTFTYPG--------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-----DEGEILLDGHD  406 (582)
T ss_pred             CeEEEEEEEEecCC--------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCceEEECCEE
Confidence            36999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+  ...+++.++||+|++.+|+ -|++||+.++.    +...+    +++++++++..|+.+.       .|+.+   
T Consensus       407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~  477 (582)
T PRK11176        407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN  477 (582)
T ss_pred             hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence            754  3567889999999999997 69999998742    11122    3345556666654332       24444   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+++|++++||||||+||+.++..+++.|+++. +++|+|+++|+++  ..+.||+|++|++|
T Consensus       478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g  554 (582)
T PRK11176        478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDG  554 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECC
Confidence             4599999999999999999999999999999999999999999999885 4689999999985  46889999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+.+++.
T Consensus       555 ~i~e~g~~~~l~  566 (582)
T PRK11176        555 EIVERGTHAELL  566 (582)
T ss_pred             EEEEeCCHHHHH
Confidence            999999988764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.2e-41  Score=382.14  Aligned_cols=211  Identities=26%  Similarity=0.370  Sum_probs=181.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++|+++.|+         +++++|+|+|+++++||.++|+|+||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       339 ~~i~~~~v~f~y~---------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~idg~~  404 (592)
T PRK10790        339 GRIDIDNVSFAYR---------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-----TEGEIRLDGRP  404 (592)
T ss_pred             CeEEEEEEEEEeC---------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCceEEECCEE
Confidence            4699999999983         235699999999999999999999999999999999999987     58999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~---  166 (612)
                      +.+  .+.+++.++||+|++.+|+. |++||+.++.      ..+    +++++++++..|+.+..       |+.+   
T Consensus       405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~  473 (592)
T PRK10790        405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ  473 (592)
T ss_pred             hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence            754  36789999999999999985 9999998852      122    23466677777665432       3333   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+.+|+|++||||||+||+.+.+.+.+.|+++.+ ++|+|+++|+++  ....||+|++|++|
T Consensus       474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G  550 (592)
T PRK10790        474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRG  550 (592)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECC
Confidence             46999999999999999999999999999999999999999999999865 589999999985  46789999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+.+++.
T Consensus       551 ~i~~~G~~~~L~  562 (592)
T PRK10790        551 QAVEQGTHQQLL  562 (592)
T ss_pred             EEEEEcCHHHHH
Confidence            999999998775

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=2.7e-41  Score=390.20  Aligned_cols=214  Identities=24%  Similarity=0.404  Sum_probs=180.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|     .+|+|.+||.+
T Consensus       462 ~~I~~~~vsf~Y~~--------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-----~~G~I~idg~~  528 (694)
T TIGR03375       462 GEIEFRNVSFAYPG--------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-----TEGSVLLDGVD  528 (694)
T ss_pred             ceEEEEEEEEEeCC--------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEE
Confidence            46999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~  165 (612)
                      +.+  ...+|+.++||+|++.+|+ .|++||+.++.    + ..+    ++++.++++..|+.+           ..++.
T Consensus       529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~  598 (694)
T TIGR03375       529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER  598 (694)
T ss_pred             hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence            754  3568999999999999987 59999998742    1 122    234455555555433           23333


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|+++|+++  ..+.||+|++|++|
T Consensus       599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G  675 (694)
T TIGR03375       599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNG  675 (694)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCC
Confidence            446999999999999999999999999999999999999999999999864 789999999985  46889999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+.+++.+
T Consensus       676 ~i~e~G~~~eLl~  688 (694)
T TIGR03375       676 RIVADGPKDQVLE  688 (694)
T ss_pred             EEEeeCCHHHHHH
Confidence            9999999887755

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.9e-41  Score=379.69  Aligned_cols=214  Identities=27%  Similarity=0.429  Sum_probs=183.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|+.        +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       337 ~~i~~~~v~f~y~~--------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-----~~G~I~i~g~~  403 (574)
T PRK11160        337 VSLTLNNVSFTYPD--------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-----QQGEILLNGQP  403 (574)
T ss_pred             CeEEEEEEEEECCC--------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEE
Confidence            46999999999832        335799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC------cc----c
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN------TL----T  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------~~----~  166 (612)
                      +.+  ...+|+.++||+|++.+|+ .|++||+.++.    + ..    .++.+++.++..|+++..+      +.    .
T Consensus       404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g  473 (574)
T PRK11160        404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG  473 (574)
T ss_pred             hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence            764  3567899999999999987 59999998752    1 11    2456778888888876543      33    3


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++.  ...||++++|++|+
T Consensus       474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~  550 (574)
T PRK11160        474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQ  550 (574)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCe
Confidence            4599999999999999999999999999999999999999999999986 57999999999863  46799999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      +++.|+.+++.+
T Consensus       551 i~~~g~~~~l~~  562 (574)
T PRK11160        551 IIEQGTHQELLA  562 (574)
T ss_pred             EEEeCCHHHHHh
Confidence            999999877643

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2e-40  Score=327.29  Aligned_cols=200  Identities=24%  Similarity=0.308  Sum_probs=167.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|..        ..+.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~~~~l~~~~~~--------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~~~g~~~   72 (207)
T cd03369           6 EIEVENLSVRYAP--------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-----EEGKIEIDGIDI   72 (207)
T ss_pred             eEEEEEEEEEeCC--------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCeEEECCEEh
Confidence            5899999998721        224699999999999999999999999999999999999886     689999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..  ....++.++|++|++.+++ .|++||+.+..      ....    +.+.+.++       .++.+.+||||||||+
T Consensus        73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv  134 (207)
T cd03369          73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLL  134 (207)
T ss_pred             HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHH
Confidence            43  2345678999999998887 59999996421      1111    22333333       3677899999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      +|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++|+++..|++
T Consensus       135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEecCCC
Confidence            99999999999999999999999999999999999985 5899999999986 454 4999999999999988764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=3.9e-41  Score=389.70  Aligned_cols=213  Identities=30%  Similarity=0.424  Sum_probs=178.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+|+|+         +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|     .+|+|.+||.+
T Consensus       472 ~~I~~~~vsf~y~---------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-----~~G~I~idg~~  537 (708)
T TIGR01193       472 GDIVINDVSYSYG---------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-----RSGEILLNGFS  537 (708)
T ss_pred             CcEEEEEEEEEcC---------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCcEEEECCEE
Confidence            3699999999982         246799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcc----
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTL----  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~----  165 (612)
                      +.+  ...+|+.+|||+|++.+|+ .|++||+.++..    ...++    +++.++++..|+.+.       .|+.    
T Consensus       538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~  608 (708)
T TIGR01193       538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE  608 (708)
T ss_pred             HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence            754  3568899999999999987 599999987521    11222    334455555554322       2333    


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|++++||||||+||+.+...+.+.|+++  +++|+|+++|+++  ..+.||+|++|++|
T Consensus       609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G  684 (708)
T TIGR01193       609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHG  684 (708)
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECC
Confidence            3469999999999999999999999999999999999999999999985  4789999999985  46889999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+.+++.+
T Consensus       685 ~i~~~G~~~~L~~  697 (708)
T TIGR01193       685 KIIEQGSHDELLD  697 (708)
T ss_pred             EEEEECCHHHHHh
Confidence            9999999887653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.9e-40  Score=320.96  Aligned_cols=173  Identities=28%  Similarity=0.467  Sum_probs=155.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|              +|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~~--------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~   64 (182)
T cd03215           4 VLEVRGLSVKG--------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-----ASGEITLDGKPV   64 (182)
T ss_pred             EEEEeccEEEe--------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence            58899998753              79999999999999999999999999999999999886     689999999886


Q ss_pred             cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ...   ...++.++|++|++   .+++.+|++||+.+...                                   |||||
T Consensus        65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~  109 (182)
T cd03215          65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGN  109 (182)
T ss_pred             CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHH
Confidence            532   23567899999984   57888999999876421                                   99999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++
T Consensus       110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999999999999999999877899999999975 67889999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-41  Score=333.40  Aligned_cols=196  Identities=28%  Similarity=0.469  Sum_probs=177.5

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------HhhccceEEEccCCCCCCC
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++++..+.-.++||-|+||||||||+|+|+|+.+|     ++|.|.+||+.+.+.      ...++++||||||..+||+
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-----deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH   90 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-----DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH   90 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-----cccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence            77888877579999999999999999999999997     689999999876442      2347899999999999999


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                      +||+.||.|+....         .....+++.+.+|++|..++++..|||||||||+|+|||+++|++|+||||.+.||-
T Consensus        91 ~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~  161 (352)
T COG4148          91 YTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL  161 (352)
T ss_pred             eEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence            99999999975321         234678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        202 LNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       202 ~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ..+.+++-.|++|+++ +..|+.++|.+. ++.+++|+|++|++|++...|+.+++.+
T Consensus       162 ~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         162 PRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             chhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence            9999999999999984 889999999975 7999999999999999999999988754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.2e-40  Score=319.54  Aligned_cols=171  Identities=32%  Similarity=0.513  Sum_probs=152.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|++++|..        +++.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~l~~~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~   67 (173)
T cd03246           1 LEVENVSFRYPG--------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-----TSGRVRLDGADIS   67 (173)
T ss_pred             CEEEEEEEEcCC--------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCeEEECCEEcc
Confidence            468999988721        235699999999999999999999999999999999999886     5899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      +  ...+++.++|++|++.+++ .||+||+                                        ||||||||++
T Consensus        68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l----------------------------------------LS~G~~qrv~  106 (173)
T cd03246          68 QWDPNELGDHVGYLPQDDELFS-GSIAENI----------------------------------------LSGGQRQRLG  106 (173)
T ss_pred             cCCHHHHHhheEEECCCCcccc-CcHHHHC----------------------------------------cCHHHHHHHH
Confidence            3  2345678999999998887 4999886                                        9999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus       107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i  173 (173)
T cd03246         107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV  173 (173)
T ss_pred             HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence            999999999999999999999999999999999999878999999999985 44 68999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.9e-42  Score=312.68  Aligned_cols=196  Identities=26%  Similarity=0.377  Sum_probs=177.4

Q ss_pred             ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCC
Q psy12625         40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNL  117 (612)
Q Consensus        40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~  117 (612)
                      .++.++|+|+|+.+++||..+|.||||||||||+|+++.+++|     ++|.+++.|+++..  .+.+|++++|+.|.+.
T Consensus        13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-----~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa   87 (223)
T COG4619          13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA   87 (223)
T ss_pred             cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-----CCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence            3678899999999999999999999999999999999999986     68999999999864  4789999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT  196 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt  196 (612)
                      +|+ -||++|+.|..+++..     +.++....+.++++++.+. .++.+.+||||||||++|+|.|..-|+||+|||||
T Consensus        88 Lfg-~tVeDNlifP~~~r~r-----r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T  161 (223)
T COG4619          88 LFG-DTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT  161 (223)
T ss_pred             ccc-cchhhccccchHHhcc-----CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence            998 5999999998877642     1245667889999999875 68899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        197 TGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       197 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |+||+.+++.|-++|.++. .+..+++.+|||+. +..+.+|+++-+..|++
T Consensus       162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~  212 (223)
T COG4619         162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence            9999999999999999997 58899999999986 56789999999999875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=7.9e-41  Score=322.98  Aligned_cols=177  Identities=32%  Similarity=0.527  Sum_probs=157.1

Q ss_pred             EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625         22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD  101 (612)
Q Consensus        22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~  101 (612)
                      +++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++..
T Consensus         1 ~~~~l~~~~----------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-----~~G~v~~~g~~~~~   65 (180)
T cd03214           1 EVENLSVGY----------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-----SSGEILLDGKDLAS   65 (180)
T ss_pred             CeeEEEEEE----------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEECCc
Confidence            468898887          345799999999999999999999999999999999999886     68999999998643


Q ss_pred             --hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        102 --HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       102 --~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                        ...+++.++|++|                                     +++.+|+.+..++.+.+||||||||++|
T Consensus        66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~l  108 (180)
T cd03214          66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNELSGGERQRVLL  108 (180)
T ss_pred             CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence              2334556888887                                     6677888877888899999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ||+|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|++. .+.+++|++++|++|++++.|
T Consensus       109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999876 899999999986 567899999999999988654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=9.4e-41  Score=340.54  Aligned_cols=216  Identities=21%  Similarity=0.265  Sum_probs=177.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|..        .++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|     .+|+|.++|++
T Consensus        18 ~~i~~~~l~~~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~~G~i~i~g~~   84 (257)
T cd03288          18 GEIKIHDLCVRYEN--------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-----FDGKIVIDGID   84 (257)
T ss_pred             ceEEEEEEEEEeCC--------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-----CCCeEEECCEE
Confidence            36999999998821        235799999999999999999999999999999999999876     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHH-----HHHHHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK-----ESKVDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +.+  ...+++.++|++|++.+++ .|++||+....      .......     ...+++.++.+  |++...++.+.+|
T Consensus        85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L  157 (257)
T cd03288          85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF  157 (257)
T ss_pred             hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence            643  2356788999999998886 59999975321      1111111     11234555555  6766677778899


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+.+|++++|||||+|||+.++..+.+.++++. ++.|||+++|++. .+. .||++++|++|+++.
T Consensus       158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~  234 (257)
T cd03288         158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVE  234 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999875 5899999999987 454 499999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       235 ~g~~~~~~  242 (257)
T cd03288         235 CDTPENLL  242 (257)
T ss_pred             eCCHHHHH
Confidence            99887654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.7e-40  Score=320.05  Aligned_cols=177  Identities=30%  Similarity=0.498  Sum_probs=155.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..        .++.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 i~~~~~~~~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~g~~~~   67 (178)
T cd03247           1 LSINNVSFSYPE--------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----QQGEITLDGVPVS   67 (178)
T ss_pred             CEEEEEEEEeCC--------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCEEEECCEEHH
Confidence            468999998721        224699999999999999999999999999999999999886     5899999998764


Q ss_pred             ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        101 DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       101 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .. ..+++.++|++|++.+++ .|++||+                                     +.+||||||||++|
T Consensus        68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~l  109 (178)
T cd03247          68 DLEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLAL  109 (178)
T ss_pred             HHHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHH
Confidence            32 345678999999998876 6998886                                     67899999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||++.+|++++|||||+|||+.++..+++.|++++ ++.|||+++|++. .+ ..+|++++|++|++++.|
T Consensus       110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG  178 (178)
T ss_pred             HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999986 5899999999986 45 579999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.6e-40  Score=368.18  Aligned_cols=206  Identities=24%  Similarity=0.367  Sum_probs=178.8

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCC---CC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDN---LL  118 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~---~l  118 (612)
                      +|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++...   ...++.+|||+|++   .+
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-----~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~  341 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGL  341 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCC
Confidence            69999999999999999999999999999999999886     589999999886432   23466899999996   57


Q ss_pred             CCCCCHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625        119 QELLTVEESLTVAAHLKLG---NQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE  194 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE  194 (612)
                      ++.+||.||+.+.......   .....++.+++++++++.+|+. +..++++++|||||||||+||++|+.+|++|||||
T Consensus       342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE  421 (501)
T PRK10762        342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE  421 (501)
T ss_pred             cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence            8889999999875321110   0122334456789999999995 67899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus       422 Pt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        422 PTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence            99999999999999999999888999999999986 68899999999999999999988776

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-40  Score=355.61  Aligned_cols=212  Identities=22%  Similarity=0.268  Sum_probs=179.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +++++||++.+..       ...+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|.+.
T Consensus        21 mL~lknL~~~~~~-------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-----~sGeI~I~G~~~   88 (549)
T PRK13545         21 FDKLKDLFFRSKD-------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-----NKGTVDIKGSAA   88 (549)
T ss_pred             eeEEEEEEEecCC-------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----CceEEEECCEee
Confidence            4667777666521       1125699999999999999999999999999999999999886     689999999751


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                                 ++.+.+.+.+.+|++||+.+.....   ..+..+..++++++++.+|+.+..++++++||||||||++|
T Consensus        89 -----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL  154 (549)
T PRK13545         89 -----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF  154 (549)
T ss_pred             -----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence                       1222345567789999998754332   22344455678899999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++++..
T Consensus       155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999999888999999999976 6788999999999999999999887654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=5.5e-41  Score=387.70  Aligned_cols=213  Identities=26%  Similarity=0.389  Sum_probs=176.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.       ..++++|+|+|++++|||.++|+||||||||||+|+|+|+++|     .+|+|.+||++
T Consensus       477 ~~I~~~nVsf~Y~~-------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~idg~~  544 (711)
T TIGR00958       477 GLIEFQDVSFSYPN-------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-----TGGQVLLDGVP  544 (711)
T ss_pred             CeEEEEEEEEECCC-------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCEEEECCEE
Confidence            36999999999842       1246799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+  ...++++++||+|++.+|+ .|++||+.++..     ..+    ++++.++++..|+.+.       .|+.+   
T Consensus       545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~  614 (711)
T TIGR00958       545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK  614 (711)
T ss_pred             HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence            754  3567899999999999987 799999987521     122    3345556666665432       23333   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+++|+|++||||||+||+.+...+.+ ..  ..+++|+|+++|+++  ..+.+|+|++|++|
T Consensus       615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G  689 (711)
T TIGR00958       615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKG  689 (711)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECC
Confidence             4699999999999999999999999999999999999999988 22  236899999999985  36789999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+.+++.+
T Consensus       690 ~ive~Gt~~eL~~  702 (711)
T TIGR00958       690 SVVEMGTHKQLME  702 (711)
T ss_pred             EEEEeeCHHHHHh
Confidence            9999999887654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=3e-40  Score=347.50  Aligned_cols=218  Identities=24%  Similarity=0.367  Sum_probs=199.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++|+++.|          +...+++|||+++++||+.||+|.||||||||+++|.|.++|     ++|+|.++|++
T Consensus         3 ~~l~~~~itK~f----------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-----~~GeI~v~G~~   67 (501)
T COG3845           3 PALEMRGITKRF----------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----DSGEIRVDGKE   67 (501)
T ss_pred             ceEEEeccEEEc----------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-----CcceEEECCEE
Confidence            358899999988          567899999999999999999999999999999999999997     68999999998


Q ss_pred             cc--ch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 LQ--DH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~--~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +.  ++ +..+..||+|+|++.+++++||.||+.++..-......+.+..+++++++.++.||+-..|.++.+||-||||
T Consensus        68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ  147 (501)
T COG3845          68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQ  147 (501)
T ss_pred             eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhH
Confidence            63  22 5678899999999999999999999998764322224566778899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      ||.|-++|..+|++|||||||+-|-|....++++.|++++++|+|||++||-.. ++.++|||+.+|++|+++..-+
T Consensus       148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999999999999999999999999999999999999999999986 7999999999999999987766

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=368.56  Aligned_cols=208  Identities=20%  Similarity=0.325  Sum_probs=179.2

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCC---C
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDN---L  117 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~---~  117 (612)
                      .+++|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++...   ...++.++|++|++   .
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~  341 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-----TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEG  341 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-----CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCC
Confidence            489999999999999999999999999999999999886     689999999886421   23467899999996   4


Q ss_pred             CCCCCCHHHHHHHHHHhcc-CCC--CCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEe
Q psy12625        118 LQELLTVEESLTVAAHLKL-GNQ--YSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD  193 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlD  193 (612)
                      +++.+|+.||+.+...... ...  ......++.++++++.+|+. +..++++++|||||||||+||++|+.+|++||||
T Consensus       342 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLD  421 (501)
T PRK11288        342 IIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLD  421 (501)
T ss_pred             CcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEc
Confidence            8889999999987532110 001  12233346788999999994 6789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||+|||+.++.+++++|++++++|.|||++|||+. ++.++||++++|++|++++.|++++..
T Consensus       422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccCC
Confidence            999999999999999999999988999999999986 688999999999999999999887643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-39  Score=313.44  Aligned_cols=233  Identities=24%  Similarity=0.322  Sum_probs=204.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccc-cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKS-KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      .+|+++||++++          ++ +.||++||++|++||+.+||||||||||||.++|+|.-.   ...++|+|.++|+
T Consensus         2 ~~L~I~dLhv~v----------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~Ge   68 (251)
T COG0396           2 MMLEIKDLHVEV----------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGE   68 (251)
T ss_pred             ceeEEeeeEEEe----------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCc
Confidence            468999999998          44 599999999999999999999999999999999999754   2468999999999


Q ss_pred             eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccC-CCChh
Q psy12625         98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTK-HLSGG  172 (612)
Q Consensus        98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~-~LSgG  172 (612)
                      ++.+.   ...|..+..-+|.|.-+|..|+.+.|..+.+.+....-...+..+.+++.++.+++++ .+++.+. ++|||
T Consensus        69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGG  148 (251)
T COG0396          69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGG  148 (251)
T ss_pred             ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcc
Confidence            98653   4467789999999999999999999998876543221112456778899999999987 6788776 69999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc--cceeeecCCeEEEe
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA--DYLYVLTEGYCTYQ  250 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~--D~v~~L~~G~iv~~  250 (612)
                      ||||..|+..++.+|++.+||||-||||..+-+.+.+.++++++.|.+++++||..  .+.++.  |+|.+|.+|+|+..
T Consensus       149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~s  226 (251)
T COG0396         149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKS  226 (251)
T ss_pred             hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEec
Confidence            99999999999999999999999999999999999999999999999999999985  567777  99999999999999


Q ss_pred             cCccChhhHHhhcCCCC
Q psy12625        251 GTVPGLVPYLSDFGYQC  267 (612)
Q Consensus       251 G~~~~~~~~f~~~g~~~  267 (612)
                      |.+ ++..+++..||.|
T Consensus       227 G~~-el~~~le~~gy~~  242 (251)
T COG0396         227 GDP-ELAEELEEKGYDW  242 (251)
T ss_pred             CCH-HHHHHHHHhchHH
Confidence            999 8889999988855

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2.9e-40  Score=329.89  Aligned_cols=197  Identities=26%  Similarity=0.364  Sum_probs=168.1

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC--CCCHHHHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE--LLTVEESL  128 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~--~lTv~e~l  128 (612)
                      +++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.   ..++.++|++|++.+++  .+|++||+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~~~---~~~~~i~~v~q~~~~~~~~~~tv~~~l   72 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-----AKGTVKVAGASPG---KGWRHIGYVPQRHEFAWDFPISVAHTV   72 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCccch---HhhCcEEEecccccccCCCCccHHHHH
Confidence            46899999999999999999999999999886     6899999998752   24578999999987643  47999999


Q ss_pred             HHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625        129 TVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       129 ~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i  207 (612)
                      .+........ .......+++++++++.+|+++..++++++||||||||++|||+|+.+|+++++||||+|||+.++..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l  152 (223)
T TIGR03771        73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL  152 (223)
T ss_pred             HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            8753211000 011223445688999999999989999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      .+.|++++++|+|+|+++|++. ++.+.||+++++ +|++++.|++++..
T Consensus       153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~  200 (223)
T TIGR03771       153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ  200 (223)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence            9999999878999999999976 578899999999 89999999887653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-41  Score=357.47  Aligned_cols=213  Identities=28%  Similarity=0.433  Sum_probs=184.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++||+++|+.        ...++|+|+|+++++||.+||+|+||||||||+++|+|..+|     .+|+|.+||.++
T Consensus       336 ~l~~~~vsF~y~~--------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-----~~G~i~~~g~~~  402 (573)
T COG4987         336 ALELRNVSFTYPG--------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----QQGSITLNGVEI  402 (573)
T ss_pred             eeeeccceeecCC--------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-----CCCeeeECCcCh
Confidence            7999999999853        455799999999999999999999999999999999999886     689999999987


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-------c----
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-------T----  166 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------~----  166 (612)
                      ...  +.+++.+++++|...+|. -|+++|+.++.    + +.    .++.+.++++++||++.....       +    
T Consensus       403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~-~A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G  472 (573)
T COG4987         403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN----P-DA----SDEELWAALQQVGLEKLLESAPDGLNTWLGEGG  472 (573)
T ss_pred             hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC----C-CC----CHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence            543  457889999999998887 69999998752    1 12    245677888888887654333       2    


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ..||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-+ +|+|+|++||+...  .+.||||++|++|+
T Consensus       473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~drIivl~~Gk  549 (573)
T COG4987         473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDRIIVLDNGK  549 (573)
T ss_pred             CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCEEEEEECCe
Confidence            3599999999999999999999999999999999999999999998866 48999999999864  68999999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      ++++|..+++..
T Consensus       550 iie~G~~~~Ll~  561 (573)
T COG4987         550 IIEEGTHAELLA  561 (573)
T ss_pred             eeecCCHHhhhc
Confidence            999999988764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.7e-40  Score=336.13  Aligned_cols=235  Identities=22%  Similarity=0.317  Sum_probs=207.1

Q ss_pred             CCceeEEEEeEEEEEEeeccccc-cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         16 RKHFNLLFQDISYSALYYDTHSY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        16 ~~~~~l~~~~ls~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ..+..++.+|+.+.|+....+-+ ......++++||+++++||.++|+|.||||||||=.+|.+++++      +|+|.+
T Consensus       272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s------~G~I~F  345 (534)
T COG4172         272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS------QGEIRF  345 (534)
T ss_pred             CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc------CceEEE
Confidence            34678999999999976543322 23345799999999999999999999999999999999999884      599999


Q ss_pred             CCEeccch-----HhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCccc
Q psy12625         95 NETRLQDH-----RMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLT  166 (612)
Q Consensus        95 ~g~~~~~~-----~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~  166 (612)
                      +|+++...     ..+|+++-.|||||  .+-|.+||.|-+.-+.....+ ..++.++++++.+.|+++||+. ..++++
T Consensus       346 ~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP  424 (534)
T COG4172         346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP  424 (534)
T ss_pred             CCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence            99998532     34688999999998  588999999999888766543 5678899999999999999986 579999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      .+.|||||||++||||++.+|++++||||||+||...+.+++++|++|.+ .|.+-++++||.. -+..+||+|+||++|
T Consensus       425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G  503 (534)
T COG4172         425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG  503 (534)
T ss_pred             cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999976 6999999999976 688999999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      +||++|+.+++.+
T Consensus       504 kiVE~G~~~~if~  516 (534)
T COG4172         504 KIVEQGPTEAVFA  516 (534)
T ss_pred             EEeeeCCHHHHhc
Confidence            9999999988743

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.3e-40  Score=347.09  Aligned_cols=188  Identities=26%  Similarity=0.443  Sum_probs=168.0

Q ss_pred             EECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCC
Q psy12625         61 ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY  140 (612)
Q Consensus        61 I~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~  140 (612)
                      |+||||||||||||+|+|+.+|     .+|+|.++|+++.+....++.++|++|++.+++.+||+||+.++...+   ..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p-----~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~   72 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQP-----DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KV   72 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCC-----CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CC
Confidence            6899999999999999999986     689999999987543334678999999999999999999999876432   23


Q ss_pred             CHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy12625        141 SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGT  219 (612)
Q Consensus       141 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~  219 (612)
                      ++.+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+
T Consensus        73 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~  152 (325)
T TIGR01187        73 PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI  152 (325)
T ss_pred             CHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence            3444567789999999999999999999999999999999999999999999999999999999999999999986 489


Q ss_pred             EEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        220 MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       220 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus       153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999976 678999999999999999999988764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=5.9e-39  Score=366.51  Aligned_cols=221  Identities=26%  Similarity=0.370  Sum_probs=192.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++++|..      ..+.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.+||+++
T Consensus         4 ~l~~~nl~~~y~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----~~G~i~~~g~~i   72 (648)
T PRK10535          4 LLELKDIRRSYPS------GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-----TSGTYRVAGQDV   72 (648)
T ss_pred             EEEEeeEEEEeCC------CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCEEc
Confidence            6899999999832      11235799999999999999999999999999999999999886     689999999986


Q ss_pred             cch--Hh----hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH--RM----LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~--~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ...  +.    .++.++|++|++.+++.+|+.||+.+.....   .....+.++++.++++.+||.+..|+.+++|||||
T Consensus        73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq  149 (648)
T PRK10535         73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQ  149 (648)
T ss_pred             CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHH
Confidence            532  22    2568999999999999999999998865322   22344556788999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. . .+.||++++|++|++++.|++
T Consensus       150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~-~~~~d~i~~l~~G~i~~~g~~  227 (648)
T PRK10535        150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-V-AAQAERVIEIRDGEIVRNPPA  227 (648)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-H-HHhCCEEEEEECCEEEeecCc
Confidence            99999999999999999999999999999999999999999878999999999975 3 467999999999999999988


Q ss_pred             cCh
Q psy12625        254 PGL  256 (612)
Q Consensus       254 ~~~  256 (612)
                      ++.
T Consensus       228 ~~~  230 (648)
T PRK10535        228 QEK  230 (648)
T ss_pred             ccc
Confidence            754

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.1e-40  Score=382.70  Aligned_cols=218  Identities=25%  Similarity=0.411  Sum_probs=180.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        +++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       454 ~~i~~~~vsf~y~~--------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-----~~G~I~idg~~  520 (694)
T TIGR01846       454 GAITFENIRFRYAP--------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-----QHGQVLVDGVD  520 (694)
T ss_pred             CeEEEEEEEEEcCC--------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEe
Confidence            46999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHH-----HHHHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE-----SKVDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +.+  ...+|+.++||+|++.+|+ .|++||+.++.    + ..++++..     ..+++.++.+  |++...+....+|
T Consensus       521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L  594 (694)
T TIGR01846       521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL  594 (694)
T ss_pred             hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence            754  3567899999999999887 69999997642    1 22222211     1123334443  4444444555679


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ . ...||++++|++|++++
T Consensus       595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~  671 (694)
T TIGR01846       595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAE  671 (694)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999999999999999999999999985 5799999999985 3 46799999999999999


Q ss_pred             ecCccChhh
Q psy12625        250 QGTVPGLVP  258 (612)
Q Consensus       250 ~G~~~~~~~  258 (612)
                      .|+.+++.+
T Consensus       672 ~g~~~~l~~  680 (694)
T TIGR01846       672 SGRHEELLA  680 (694)
T ss_pred             eCCHHHHHH
Confidence            999887643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=2.9e-40  Score=374.87  Aligned_cols=212  Identities=27%  Similarity=0.424  Sum_probs=177.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|+         +++++|+|+|++++|||.++|+|+||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       333 ~~I~~~~vsf~y~---------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-----~~G~I~i~g~~  398 (588)
T PRK13657        333 GAVEFDDVSFSYD---------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-----QSGRILIDGTD  398 (588)
T ss_pred             CeEEEEEEEEEeC---------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEE
Confidence            3699999999983         235699999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~  165 (612)
                      +.+  ...+++.++||+|++.+|+ .|++||+.++.    + ..++    +++++.++..|+.+           .....
T Consensus       399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~  468 (588)
T PRK13657        399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER  468 (588)
T ss_pred             hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence            764  3567899999999999987 69999998742    1 1222    23444455555432           22233


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. +++|+|++||+++  ..+.+|++++|++|
T Consensus       469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G  545 (588)
T PRK13657        469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNG  545 (588)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECC
Confidence            34699999999999999999999999999999999999999999999875 4799999999985  46889999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+.++..
T Consensus       546 ~i~~~g~~~~l~  557 (588)
T PRK13657        546 RVVESGSFDELV  557 (588)
T ss_pred             EEEEeCCHHHHH
Confidence            999999887664

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=6.6e-40  Score=365.48  Aligned_cols=217  Identities=22%  Similarity=0.324  Sum_probs=182.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|++.               .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus       268 ~l~~~~l~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----~~G~i~~~g~~i  327 (510)
T PRK15439        268 VLTVEDLTG---------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----RGGRIMLNGKEI  327 (510)
T ss_pred             eEEEeCCCC---------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----CCcEEEECCEEC
Confidence            577777762               159999999999999999999999999999999999886     589999999986


Q ss_pred             cch---HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChh
Q psy12625        100 QDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgG  172 (612)
                      ...   ...++.++|++|++   .+++.+|+.||+........+........+++++++++.+||+ +..++++++||||
T Consensus       328 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  407 (510)
T PRK15439        328 NALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGG  407 (510)
T ss_pred             CCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcH
Confidence            432   12356799999984   4788899999986431111110111223345788999999997 7889999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++||+. .+.++||++++|++|+++..|+
T Consensus       408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~  486 (510)
T PRK15439        408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT  486 (510)
T ss_pred             HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence            999999999999999999999999999999999999999999888999999999986 6889999999999999999998


Q ss_pred             ccChh
Q psy12625        253 VPGLV  257 (612)
Q Consensus       253 ~~~~~  257 (612)
                      ++++.
T Consensus       487 ~~~~~  491 (510)
T PRK15439        487 GAAIN  491 (510)
T ss_pred             cccCC
Confidence            87653

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=2.7e-40  Score=374.14  Aligned_cols=214  Identities=27%  Similarity=0.401  Sum_probs=180.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        .++++|+|+|+++++||.++|+|+||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       329 ~~i~~~~v~f~y~~--------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-----~~G~I~i~g~~  395 (571)
T TIGR02203       329 GDVEFRNVTFRYPG--------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-----DSGQILLDGHD  395 (571)
T ss_pred             CeEEEEEEEEEcCC--------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCeEEECCEe
Confidence            36999999999832        346799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+  .+.+++.++||+|++.+|+ .|++||+.++.    ++..+    +++++++++.+|+.+.       .|+.+   
T Consensus       396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~  466 (571)
T TIGR02203       396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN  466 (571)
T ss_pred             HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence            753  3567889999999999887 59999998752    11122    3456666666666432       23333   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||+++++|++++||||||+||+.+++.+++.|++++ +++|+|++||+++  ..+.||+|++|++|
T Consensus       467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g  543 (571)
T TIGR02203       467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDG  543 (571)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCC
Confidence             3599999999999999999999999999999999999999999999885 4689999999984  57889999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+.++..
T Consensus       544 ~i~~~g~~~~l~  555 (571)
T TIGR02203       544 RIVERGTHNELL  555 (571)
T ss_pred             EEEeeCCHHHHH
Confidence            999999988764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=6.4e-40  Score=371.19  Aligned_cols=216  Identities=24%  Similarity=0.341  Sum_probs=178.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++|++++|+         +++++|+|+|+++++||.++|+||||||||||+++|+|+.+|     .+|+|.+||.+
T Consensus       333 ~~i~~~~v~~~y~---------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~  398 (585)
T TIGR01192       333 GAVEFRHITFEFA---------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----TVGQILIDGID  398 (585)
T ss_pred             CeEEEEEEEEECC---------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-----CCCEEEECCEE
Confidence            3699999999882         224689999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +.+  .+.+++.++||+|++.+++ .|++||+.++.    + ..++++.++.     .++.+..+  |++...++...+|
T Consensus       399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L  472 (585)
T TIGR01192       399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL  472 (585)
T ss_pred             hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence            754  3567889999999999886 69999998752    1 1223222221     22233332  5555556667789


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. +++|+|+++|+++ . ...||++++|++|+++.
T Consensus       473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~-~~~~d~i~~l~~G~i~~  549 (585)
T TIGR01192       473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-T-VRNADLVLFLDQGRLIE  549 (585)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-H-HHcCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999885 5899999999985 3 46799999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+.++..
T Consensus       550 ~g~~~~l~  557 (585)
T TIGR01192       550 KGSFQELI  557 (585)
T ss_pred             ECCHHHHH
Confidence            99887664

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.5e-40  Score=371.61  Aligned_cols=213  Identities=24%  Similarity=0.321  Sum_probs=177.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|+        .+++.+|+|+|+++++||.++|+||||||||||+++|+|+++|     .+|+|.+||++
T Consensus       312 ~~I~~~~v~~~y~--------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~i~~~g~~  378 (569)
T PRK10789        312 GELDVNIRQFTYP--------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-----SEGDIRFHDIP  378 (569)
T ss_pred             CcEEEEEEEEECC--------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----CCCEEEECCEE
Confidence            3689999999873        2346799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----------ccccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~  165 (612)
                      +.+  ...+++.++||+|++.+|+ .|++||+.++.    + ..++    +.+++.++..++           +...+..
T Consensus       379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~  448 (569)
T PRK10789        379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR----P-DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER  448 (569)
T ss_pred             HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence            754  3567889999999999987 59999997642    1 1222    233444444443           3333444


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++  ..+.+|++++|++|
T Consensus       449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G  525 (569)
T PRK10789        449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHG  525 (569)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCC
Confidence            55799999999999999999999999999999999999999999999985 5899999999985  35779999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+.+++.
T Consensus       526 ~i~~~g~~~~l~  537 (569)
T PRK10789        526 HIAQRGNHDQLA  537 (569)
T ss_pred             EEEEecCHHHHH
Confidence            999999987664

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.3e-39  Score=315.64  Aligned_cols=191  Identities=23%  Similarity=0.339  Sum_probs=164.1

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++.+++ +|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.++.
T Consensus         2 l~~~~l~~~~----------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~g~~i~   65 (195)
T PRK13541          2 LSLHQLQFNI----------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----SSGNIYYKNCNIN   65 (195)
T ss_pred             eEEEEeeEEE----------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCcccC
Confidence            7889999987          3345555 9999999999999999999999999999999886     6899999998864


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +..  ++.++|++|++.+++..||+||+.+.....   .     ..++++++++.+|+.+..++.+++||||||||++||
T Consensus        66 ~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la  135 (195)
T PRK13541         66 NIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA  135 (195)
T ss_pred             hhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence            322  356899999988888899999998754321   1     234678889999999889999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL  239 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v  239 (612)
                      |+++.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++..  ...+|-+
T Consensus       136 ~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~  192 (195)
T PRK13541        136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL  192 (195)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence            99999999999999999999999999999998877788999999999863  3446654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=7.1e-40  Score=371.09  Aligned_cols=214  Identities=24%  Similarity=0.375  Sum_probs=178.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.       ..++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       336 ~~i~~~~v~f~y~~-------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-----~~G~I~i~g~~  403 (576)
T TIGR02204       336 GEIEFEQVNFAYPA-------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-----QSGRILLDGVD  403 (576)
T ss_pred             ceEEEEEEEEECCC-------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----CCCEEEECCEE
Confidence            36999999999832       1226799999999999999999999999999999999999986     58999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~  165 (612)
                      +.+  ...+++.++|+||++.+|+ .|++||+.++.    + ..+    ++++++.++..|+.+           ..++.
T Consensus       404 i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~  473 (576)
T TIGR02204       404 LRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER  473 (576)
T ss_pred             HHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence            754  3567889999999999886 69999997742    1 122    234555566655532           22233


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++||||++.+|++++||||||+||+.+++.+++.|+++. +++|+|++||+++  ..+.+|++++|++|
T Consensus       474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g  550 (576)
T TIGR02204       474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQG  550 (576)
T ss_pred             CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECC
Confidence            34699999999999999999999999999999999999999999999985 4799999999984  46789999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+.++..
T Consensus       551 ~~~~~g~~~~l~  562 (576)
T TIGR02204       551 RIVAQGTHAELI  562 (576)
T ss_pred             EEEeeecHHHHH
Confidence            999999977653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=3.5e-39  Score=306.51  Aligned_cols=159  Identities=28%  Similarity=0.433  Sum_probs=144.4

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|          +++++++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~----------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----~~G~v~~~g~~~~   65 (163)
T cd03216           1 LELRGITKRF----------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-----DSGEILVDGKEVS   65 (163)
T ss_pred             CEEEEEEEEE----------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEECC
Confidence            4689999988          345799999999999999999999999999999999999886     6899999999865


Q ss_pred             ch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        101 DH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       101 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..   ...++.++|++|                                                      ||||||||+
T Consensus        66 ~~~~~~~~~~~i~~~~q------------------------------------------------------LS~G~~qrl   91 (163)
T cd03216          66 FASPRDARRAGIAMVYQ------------------------------------------------------LSVGERQMV   91 (163)
T ss_pred             cCCHHHHHhcCeEEEEe------------------------------------------------------cCHHHHHHH
Confidence            32   234668999998                                                      999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      +|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.||++++|++|++++
T Consensus        92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216          92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999999999999999999878999999999975 5778999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=2.4e-39  Score=310.03  Aligned_cols=169  Identities=39%  Similarity=0.598  Sum_probs=148.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|..        .++.+++|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+++.
T Consensus         1 l~~~~l~~~~~~--------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-----~~G~i~~~g~~~~   67 (171)
T cd03228           1 IEFKNVSFSYPG--------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-----TSGEILIDGVDLR   67 (171)
T ss_pred             CEEEEEEEEcCC--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCCEEEECCEEhh
Confidence            467899988721        123799999999999999999999999999999999999886     5899999998864


Q ss_pred             c--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        101 D--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       101 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      .  ...+++.++|++|++.+++ .|++||+                                        ||||||||++
T Consensus        68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~  106 (171)
T cd03228          68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIA  106 (171)
T ss_pred             hcCHHHHHhhEEEEcCCchhcc-chHHHHh----------------------------------------hCHHHHHHHH
Confidence            3  2345678999999998776 5888886                                        9999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.. ||++++|++|+
T Consensus       107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~  171 (171)
T cd03228         107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR  171 (171)
T ss_pred             HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence            99999999999999999999999999999999999964 699999999986 4555 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.1e-39  Score=321.20  Aligned_cols=193  Identities=27%  Similarity=0.350  Sum_probs=156.1

Q ss_pred             EEEEeEEEEEEeeccccccccc---cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         21 LLFQDISYSALYYDTHSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      |+++||++++..        ++   +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++| 
T Consensus         1 l~~~~l~~~~~~--------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-----~~G~i~~~g-   66 (204)
T cd03250           1 ISVEDASFTWDS--------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-----LSGSVSVPG-   66 (204)
T ss_pred             CEEeEEEEecCC--------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-----CCCeEEEcC-
Confidence            468999998721        11   4699999999999999999999999999999999999886     689999998 


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCCCC
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKHLS  170 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LS  170 (612)
                                .++|++|++.+++ .|++||+.+...      ...+...+.     +.+.++.+  |++...++.+.+||
T Consensus        67 ----------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS  129 (204)
T cd03250          67 ----------SIAYVSQEPWIQN-GTIRENILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLS  129 (204)
T ss_pred             ----------EEEEEecCchhcc-CcHHHHhccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCC
Confidence                      4999999998885 799999987421      111111111     11222222  34455667788999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||+++|++. .+.. +|++++|++|+
T Consensus       130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~  204 (204)
T cd03250         130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR  204 (204)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence            999999999999999999999999999999999999998 56777667899999999986 4555 99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=5.5e-39  Score=319.53  Aligned_cols=198  Identities=24%  Similarity=0.367  Sum_probs=160.9

Q ss_pred             EEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc
Q psy12625         22 LFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD  101 (612)
Q Consensus        22 ~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~  101 (612)
                      .+.|+++.+.         +++.+++|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|+++..
T Consensus         2 ~~~~~~~~~~---------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----~~G~i~~~g~~~~~   67 (218)
T cd03290           2 QVTNGYFSWG---------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----LEGKVHWSNKNESE   67 (218)
T ss_pred             eeeeeEEecC---------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----CCCeEEECCccccc
Confidence            4567777762         235799999999999999999999999999999999999876     58999999987532


Q ss_pred             h------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCc
Q psy12625        102 H------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNT  164 (612)
Q Consensus       102 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~  164 (612)
                      .      ...++.++|++|++.++ ..|++||+.+...      ...    +..+++++.+++.+           ..++
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  136 (218)
T cd03290          68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE  136 (218)
T ss_pred             ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc
Confidence            1      12456799999999887 5799999976421      111    12334555555543           2356


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~--~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      .+.+||||||||++|||+|+.+|+++||||||+|||+.++..+++  +++.++++|.|+|+++|++. .+ ..+|++++|
T Consensus       137 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l  214 (218)
T cd03290         137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM  214 (218)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence            788999999999999999999999999999999999999999998  67777667899999999986 44 579999999


Q ss_pred             cCCe
Q psy12625        243 TEGY  246 (612)
Q Consensus       243 ~~G~  246 (612)
                      ++|.
T Consensus       215 ~~G~  218 (218)
T cd03290         215 KDGS  218 (218)
T ss_pred             cCCC
Confidence            9884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-39  Score=356.98  Aligned_cols=218  Identities=20%  Similarity=0.327  Sum_probs=182.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.+            +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|++
T Consensus       249 ~~i~~~~l~~~~------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~  311 (491)
T PRK10982        249 VILEVRNLTSLR------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----SAGTITLHGKK  311 (491)
T ss_pred             cEEEEeCccccc------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-----CccEEEECCEE
Confidence            368999998752            3589999999999999999999999999999999999986     68999999988


Q ss_pred             ccch---HhhccceEEEccCC---CCCCCCCHHHHHHHHH--Hh-ccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCC
Q psy12625         99 LQDH---RMLRKESCYIMQDN---LLQELLTVEESLTVAA--HL-KLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKH  168 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~  168 (612)
                      +...   ...++.++|++|++   .+++.+|+.+|..+..  .. ......++...++.++++++.+++. +..++++++
T Consensus       312 i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  391 (491)
T PRK10982        312 INNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS  391 (491)
T ss_pred             CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc
Confidence            6432   23466799999985   4688898888743321  01 1000012233456788999999995 567999999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||||||||+||++++.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++
T Consensus       392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~  470 (491)
T PRK10982        392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA  470 (491)
T ss_pred             CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999888999999999986 678999999999999999


Q ss_pred             EecCcc
Q psy12625        249 YQGTVP  254 (612)
Q Consensus       249 ~~G~~~  254 (612)
                      ..++.+
T Consensus       471 ~~~~~~  476 (491)
T PRK10982        471 GIVDTK  476 (491)
T ss_pred             EEEccc
Confidence            877664

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=314.78  Aligned_cols=221  Identities=24%  Similarity=0.334  Sum_probs=189.3

Q ss_pred             CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625         16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN   95 (612)
Q Consensus        16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~   95 (612)
                      .....|+++|+++.+          ++|+||+|+|++|++||-.+|+|||||||||||++++|..+|     .+|.+.+.
T Consensus        27 ~~~~li~l~~v~v~r----------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-----ssg~~~~~   91 (257)
T COG1119          27 INEPLIELKNVSVRR----------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-----SSGDVTLL   91 (257)
T ss_pred             CCcceEEecceEEEE----------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-----CCCceeee
Confidence            344579999999987          779999999999999999999999999999999999999886     48999999


Q ss_pred             CEeccc--h-HhhccceEEEccC--CCCCCCCCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC
Q psy12625         96 ETRLQD--H-RMLRKESCYIMQD--NLLQELLTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH  168 (612)
Q Consensus        96 g~~~~~--~-~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~  168 (612)
                      |+....  . .++|+.||+|.-.  ..+.+..+|+|-+.-+..-  ........++..+++..+++.+|+++.+|++.++
T Consensus        92 G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~  171 (257)
T COG1119          92 GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS  171 (257)
T ss_pred             eeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh
Confidence            988642  2 5689999999743  3445567888877543221  1111122355677899999999999999999999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ||-||||||-|||||+.+|++||||||++|||..+++.+.+.|.+++..  +.++|++||+.. ++...+++++++++|+
T Consensus       172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~  250 (257)
T COG1119         172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGE  250 (257)
T ss_pred             cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCc
Confidence            9999999999999999999999999999999999999999999999874  889999999976 7889999999999999


Q ss_pred             EEEecC
Q psy12625        247 CTYQGT  252 (612)
Q Consensus       247 iv~~G~  252 (612)
                      ++++|.
T Consensus       251 v~~~g~  256 (257)
T COG1119         251 VVAQGK  256 (257)
T ss_pred             eeeccc
Confidence            999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.7e-39  Score=396.26  Aligned_cols=220  Identities=26%  Similarity=0.375  Sum_probs=181.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC-------------
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT-------------   85 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~-------------   85 (612)
                      ..|+++||+|+|+.       ..++++|+|+|+++++|+.+||+||||||||||+++|.|+++|..+             
T Consensus      1164 g~I~f~nVsF~Y~~-------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265       1164 GKIEIMDVNFRYIS-------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred             ceEEEEEEEEECCC-------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Confidence            36999999999842       1235799999999999999999999999999999999999987200             


Q ss_pred             ------------------------------------CCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCCHHHH
Q psy12625         86 ------------------------------------ETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEES  127 (612)
Q Consensus        86 ------------------------------------~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~  127 (612)
                                                          .+.+|+|++||.++.+  .+.+|+.+|||+|++.+|+ .|++||
T Consensus      1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreN 1315 (1466)
T PTZ00265       1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYEN 1315 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHH
Confidence                                                0258999999999864  3678999999999999996 899999


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-------cccCcccC----CCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625        128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-------TCKNTLTK----HLSGGQKKRLSIALELLSNPSIIFLDEPT  196 (612)
Q Consensus       128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~~~----~LSgGerqRv~ia~aL~~~p~illlDEPt  196 (612)
                      |.++..     ..++    +.++++++..++.       +-.|+.++    +||||||||++|||||+++|+||+|||||
T Consensus      1316 I~~g~~-----~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265       1316 IKFGKE-----DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred             HhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            998621     2222    3345555554443       23355554    59999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecC----CeEE-EecCccChh
Q psy12625        197 TGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTE----GYCT-YQGTVPGLV  257 (612)
Q Consensus       197 sgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~  257 (612)
                      |+||+.+.+.|.+.|+++. .+++|+|+++|+++  ..+.||+|++|++    |+++ +.|+.+++.
T Consensus      1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             cccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            9999999999999999986 36899999999985  3678999999999    8955 899988765

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=9e-39  Score=355.13  Aligned_cols=217  Identities=21%  Similarity=0.262  Sum_probs=177.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++    ..+|+|.++|++
T Consensus       259 ~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~----~~~G~i~~~g~~  324 (490)
T PRK10938        259 PRIVLNNGVVSY----------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ----GYSNDLTLFGRR  324 (490)
T ss_pred             ceEEEeceEEEE----------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc----ccCCeEEEeccc
Confidence            469999999988          446699999999999999999999999999999999998652    147999999986


Q ss_pred             ccc---hHhhccceEEEccCCCCCCC--CCHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCC
Q psy12625         99 LQD---HRMLRKESCYIMQDNLLQEL--LTVEESLTVAAHL--KLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLS  170 (612)
Q Consensus        99 ~~~---~~~~~~~i~yv~Q~~~l~~~--lTv~e~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS  170 (612)
                      +..   ....++.++|++|++.++..  .|+++++.+....  ....... ...+++++++++.+||.+ ..++++++||
T Consensus       325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  403 (490)
T PRK10938        325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLS  403 (490)
T ss_pred             CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCC
Confidence            422   12346789999998765443  5777776543211  1101111 233567899999999997 8899999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHh-cccceeeecCCeEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLN-MADYLYVLTEGYCT  248 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv  248 (612)
                      |||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++++ .|||++|||+. .+.+ .+|++++|++|+++
T Consensus       404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~  482 (490)
T PRK10938        404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIY  482 (490)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceE
Confidence            999999999999999999999999999999999999999999998765 57999999986 5666 58999999999987


Q ss_pred             Eec
Q psy12625        249 YQG  251 (612)
Q Consensus       249 ~~G  251 (612)
                      +.-
T Consensus       483 ~~~  485 (490)
T PRK10938        483 RYV  485 (490)
T ss_pred             Eee
Confidence            754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=357.66  Aligned_cols=209  Identities=24%  Similarity=0.347  Sum_probs=176.6

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|++++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|.   
T Consensus         2 l~i~~ls~~~----------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---   63 (530)
T PRK15064          2 LSTANITMQF----------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-----SAGNVSLDPN---   63 (530)
T ss_pred             EEEEEEEEEe----------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC---
Confidence            7899999987          456799999999999999999999999999999999999886     5899999873   


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHH-hc-----------cCC-C----------------CCHHHHHHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAH-LK-----------LGN-Q----------------YSRKAKESKVDS  151 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~-----------~~~-~----------------~~~~~~~~~v~~  151 (612)
                            ..++|++|++.+++.+||+|++.++.. ..           .+. .                ....+.++++++
T Consensus        64 ------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (530)
T PRK15064         64 ------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGE  137 (530)
T ss_pred             ------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHH
Confidence                  348999999999999999999986421 00           000 0                000123457889


Q ss_pred             HHHHcCCcccc-CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        152 IADSLSISTCK-NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       152 ~l~~lgL~~~~-~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      +++.+|+.+.. ++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++   .|.|||+++||+. 
T Consensus       138 ~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-  213 (530)
T PRK15064        138 LLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-  213 (530)
T ss_pred             HHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-
Confidence            99999998644 578899999999999999999999999999999999999999999999863   5899999999976 


Q ss_pred             HHHhcccceeeecCCeE-EEecCccChh
Q psy12625        231 SLLNMADYLYVLTEGYC-TYQGTVPGLV  257 (612)
Q Consensus       231 ~i~~~~D~v~~L~~G~i-v~~G~~~~~~  257 (612)
                      .+.++||++++|++|++ ++.|++++..
T Consensus       214 ~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        214 FLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            57889999999999999 4888877553

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.8e-38  Score=357.40  Aligned_cols=209  Identities=26%  Similarity=0.380  Sum_probs=177.1

Q ss_pred             eeEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      .+|+++||++.|          + ++++|+|+|++|++||+++|+||||||||||||+|+|+.+|     .+|+|.+++.
T Consensus         5 ~~l~i~~l~~~y----------~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----~~G~i~~~~~   69 (556)
T PRK11819          5 YIYTMNRVSKVV----------PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----FEGEARPAPG   69 (556)
T ss_pred             EEEEEeeEEEEe----------CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC
Confidence            479999999988          3 57799999999999999999999999999999999999886     6899998752


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH-hc------------cCCCCC--------------------HHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH-LK------------LGNQYS--------------------RKA  144 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~------------~~~~~~--------------------~~~  144 (612)
                               ..+|||+|++.+++.+||.||+.++.. ..            ......                    ..+
T Consensus        70 ---------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (556)
T PRK11819         70 ---------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD  140 (556)
T ss_pred             ---------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccc
Confidence                     359999999999999999999987531 10            000000                    001


Q ss_pred             HHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy12625        145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT  224 (612)
Q Consensus       145 ~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~  224 (612)
                      .+++++++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.   .|||++
T Consensus       141 ~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviii  216 (556)
T PRK11819        141 LDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAV  216 (556)
T ss_pred             hHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEE
Confidence            2456888999999964 789999999999999999999999999999999999999999999999999873   499999


Q ss_pred             ecCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625        225 LHQPSASLLNMADYLYVLTEGYCT-YQGTVPGL  256 (612)
Q Consensus       225 ~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~  256 (612)
                      |||+. .+.+.||++++|++|+++ +.|+.++.
T Consensus       217 sHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        217 THDRY-FLDNVAGWILELDRGRGIPWEGNYSSW  248 (556)
T ss_pred             eCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence            99976 678899999999999986 77876643

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-38  Score=314.84  Aligned_cols=193  Identities=22%  Similarity=0.320  Sum_probs=170.5

Q ss_pred             eeEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ..++++||++.|.....  .... ...+++||||++++||+++|+|+||||||||-|+|.|+.+|     ++|+|.++|+
T Consensus         3 ~ll~v~~l~k~f~~~~~--~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-----t~G~i~f~g~   75 (268)
T COG4608           3 PLLEVKNLKKYFPVGKG--FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-----TSGEILFEGK   75 (268)
T ss_pred             ceEEEeccEEEEecccc--cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-----CCceEEEcCc
Confidence            36899999999965321  1111 24799999999999999999999999999999999999987     6899999998


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR  176 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR  176 (612)
                      ++....                                      +++.++++.++|+.+|+.. ..++++.+||||||||
T Consensus        76 ~i~~~~--------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR  117 (268)
T COG4608          76 DITKLS--------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR  117 (268)
T ss_pred             chhhcc--------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence            853321                                      2445678999999999976 6899999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ++|||||+.+|+++++|||||+||...+.+++++|+++.+ .|.|.++++||.+ .+..++||+.+|..|++++.|+.++
T Consensus       118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~  196 (268)
T COG4608         118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEE  196 (268)
T ss_pred             HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHH
Confidence            9999999999999999999999999999999999999987 6999999999986 6889999999999999999999988


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       197 ~~  198 (268)
T COG4608         197 VF  198 (268)
T ss_pred             Hh
Confidence            74

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=3.7e-38  Score=318.86  Aligned_cols=189  Identities=26%  Similarity=0.287  Sum_probs=159.8

Q ss_pred             ccccceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625         44 DILKDISGVFV-----SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL  118 (612)
Q Consensus        44 ~iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l  118 (612)
                      ..++|++++++     +||+++|+||||||||||+++|+|+.+|     .+|+|.++|.          .++|++|+...
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----~~G~i~~~g~----------~i~~~~q~~~~   72 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----DEGDIEIELD----------TVSYKPQYIKA   72 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCCeEEECCc----------eEEEecccccC
Confidence            36778888876     7999999999999999999999999886     5899999884          48999999887


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625        119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg  198 (612)
                      .+.+||+|++.+......    .   ....++++++.+||.+..++.+++|||||||||+||++|+.+|++++|||||++
T Consensus        73 ~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~  145 (246)
T cd03237          73 DYEGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY  145 (246)
T ss_pred             CCCCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            778999999876432110    1   123467889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE--EecCccC
Q psy12625        199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT--YQGTVPG  255 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~  255 (612)
                      ||+.++..+.+.|+++++ .|+|||+++||+. .+..+||++++|+++..+  ..+++.+
T Consensus       146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~  204 (246)
T cd03237         146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS  204 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence            999999999999999986 5899999999975 677899999999764333  3344444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=8.4e-39  Score=358.71  Aligned_cols=197  Identities=29%  Similarity=0.458  Sum_probs=165.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|+.        +++++|+|+|+++++||.++|+||||||||||+|+|+|+.+|     .+|+|.+||.++
T Consensus       320 ~i~~~~v~f~y~~--------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~I~~~g~~i  386 (529)
T TIGR02857       320 SLEFSGLSVAYPG--------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----TEGSIAVNGVPL  386 (529)
T ss_pred             eEEEEEEEEECCC--------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEeh
Confidence            6999999999832        335799999999999999999999999999999999999986     689999999987


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Ccc----c
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTL----T  166 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----~  166 (612)
                      .+  .+.+|+.++||+|++.+|+ .|++||+.++..     ..+    ++.+++.++..|+.+..       |+.    .
T Consensus       387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g  456 (529)
T TIGR02857       387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG  456 (529)
T ss_pred             hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence            54  3568899999999999997 699999987521     122    23455666666654322       333    3


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      .+||||||||++|||||+++|++++||||||+||+.+.+.+.+.++++. +++|+|+++|+++  ..+.||+|++|
T Consensus       457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l  529 (529)
T TIGR02857       457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL  529 (529)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence            4699999999999999999999999999999999999999999999885 5799999999985  35789999876

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=6.1e-38  Score=322.88  Aligned_cols=201  Identities=23%  Similarity=0.343  Sum_probs=163.4

Q ss_pred             CCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE
Q psy12625         15 PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI   94 (612)
Q Consensus        15 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~   94 (612)
                      ......|+++|+++.            .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|     .+|+|.+
T Consensus        34 ~~~~~~l~i~nls~~------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----~~G~I~i   96 (282)
T cd03291          34 SSDDNNLFFSNLCLV------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-----SEGKIKH   96 (282)
T ss_pred             CCCCCeEEEEEEEEe------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEE
Confidence            444567999999873            24599999999999999999999999999999999999886     5899999


Q ss_pred             CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccC
Q psy12625         95 NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKN  163 (612)
Q Consensus        95 ~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~  163 (612)
                      +|           .++|++|++.+++ .||+||+.+....      ..    .++.+.++.+++.+           ..+
T Consensus        97 ~g-----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~  154 (282)
T cd03291          97 SG-----------RISFSSQFSWIMP-GTIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG  154 (282)
T ss_pred             CC-----------EEEEEeCcccccc-cCHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec
Confidence            87           2899999998887 4999999764211      11    11223333334332           233


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL-RDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      +.+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..||++++|
T Consensus       155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l  231 (282)
T cd03291         155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILIL  231 (282)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence            456789999999999999999999999999999999999999999865 5554 5789999999986 34 689999999


Q ss_pred             cCCeEEEecCccChh
Q psy12625        243 TEGYCTYQGTVPGLV  257 (612)
Q Consensus       243 ~~G~iv~~G~~~~~~  257 (612)
                      ++|++++.|+++++.
T Consensus       232 ~~G~i~~~g~~~~~~  246 (282)
T cd03291         232 HEGSSYFYGTFSELQ  246 (282)
T ss_pred             ECCEEEEECCHHHHH
Confidence            999999999887654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0055|consensus

Probab=100.00  E-value=5.6e-39  Score=369.26  Aligned_cols=219  Identities=27%  Similarity=0.421  Sum_probs=185.8

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ....|+++||+|.|+.       ..+.+||+|+|+++++|+.+||+|||||||||...+|-.+++|     ++|.|.+||
T Consensus       984 ~~G~I~~~~V~F~YPs-------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-----~~G~V~IDg 1051 (1228)
T KOG0055|consen  984 VKGDIEFRNVSFAYPT-------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-----DAGKVKIDG 1051 (1228)
T ss_pred             ceeEEEEeeeEeeCCC-------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CCCeEEECC
Confidence            3457999999999965       2567899999999999999999999999999999999999986     689999999


Q ss_pred             Eeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccC--
Q psy12625         97 TRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTK--  167 (612)
Q Consensus        97 ~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~--  167 (612)
                      +++++.  +.+|+++|.|.|+|.||. -|++||+.|+. .    +.+.++..+     .+.+.+.  +|.+-.||+++  
T Consensus      1052 ~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGER 1123 (1228)
T ss_pred             cccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcc
Confidence            998753  678999999999999997 79999999981 1    133333222     1222222  34555566665  


Q ss_pred             --CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       168 --~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                        +||||||||++||||+++||+||||||.||+||+++.+.+-+.|.+.. .|+|.|++.|.++.  .+-||.|.|+++|
T Consensus      1124 G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNG 1200 (1228)
T ss_pred             cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECC
Confidence              699999999999999999999999999999999999999999999865 68999999999863  6889999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      +++++|+.+++..
T Consensus      1201 ~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLA 1213 (1228)
T ss_pred             EEEecccHHHHHh
Confidence            9999999988765

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=3.8e-38  Score=300.26  Aligned_cols=163  Identities=33%  Similarity=0.496  Sum_probs=144.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++|+++.|+         +++++|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|.   
T Consensus         1 i~~~~~~~~~~---------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~~G~i~~~~~---   63 (166)
T cd03223           1 IELENLSLATP---------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-----GSGRIGMPEG---   63 (166)
T ss_pred             CEEEEEEEEcC---------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCC---
Confidence            46889998872         135699999999999999999999999999999999999886     5899999873   


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                            +.++|++|++.++ ..|++||+.+.                                 .+.+||||||||++||
T Consensus        64 ------~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~la  103 (166)
T cd03223          64 ------EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFA  103 (166)
T ss_pred             ------ceEEEECCCCccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHH
Confidence                  5699999998765 57999998642                                 3578999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      |+|+.+|++++|||||+|||+.++..+.+.|+++   +.|+|++||++.  ....||++++|++|
T Consensus       104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~  163 (166)
T cd03223         104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE  163 (166)
T ss_pred             HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence            9999999999999999999999999999999886   589999999975  35799999999875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=297.95  Aligned_cols=222  Identities=28%  Similarity=0.419  Sum_probs=195.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-E
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-T   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~   97 (612)
                      ..|+++||++++          +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+|     .+|+++++| .
T Consensus         4 ~iL~~~~vsVsF----------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-----~~G~v~f~g~~   68 (249)
T COG4674           4 IILYLDGVSVSF----------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-----QEGEVLFDGDT   68 (249)
T ss_pred             ceEEEeceEEEE----------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-----CcceEEEcCch
Confidence            568999999998          677899999999999999999999999999999999999886     589999999 6


Q ss_pred             eccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-----CCCHHHHHHHHHHHHHHcCCccccCcccCCC
Q psy12625         98 RLQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-----QYSRKAKESKVDSIADSLSISTCKNTLTKHL  169 (612)
Q Consensus        98 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L  169 (612)
                      ++...   ...|..||--+|.|..|+.+||+|||.++.+...+-     .....+.+.+++++|+..||.+.++...+.|
T Consensus        69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~L  148 (249)
T COG4674          69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALL  148 (249)
T ss_pred             hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhh
Confidence            66443   334678999999999999999999999875432110     0112345678999999999999999999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |-||||++.|++-++.+|++|++|||++|+--....+..++|+.++. +.+|+++.||.. .+.+++|+|.+|++|.+..
T Consensus       149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~  226 (249)
T COG4674         149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA  226 (249)
T ss_pred             ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence            99999999999999999999999999999999999999999999985 579999999986 7899999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+.+++.
T Consensus       227 EGsld~v~  234 (249)
T COG4674         227 EGSLDEVQ  234 (249)
T ss_pred             cccHHHhh
Confidence            99988764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-38  Score=353.71  Aligned_cols=202  Identities=23%  Similarity=0.323  Sum_probs=174.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+ 
T Consensus       318 ~~l~~~~l~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~~-  381 (530)
T PRK15064        318 NALEVENLTKGF----------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-----DSGTVKWSEN-  381 (530)
T ss_pred             ceEEEEeeEEee----------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCc-
Confidence            369999999987          446799999999999999999999999999999999999886     5899999873 


Q ss_pred             ccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625         99 LQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq  175 (612)
                              +.+||++|++.  +++.+||+|++.+..   ..     ...+++++++++.+|+. +..++++++|||||||
T Consensus       382 --------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  445 (530)
T PRK15064        382 --------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKG  445 (530)
T ss_pred             --------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHH
Confidence                    35999999864  556799999986421   10     11245688999999994 6789999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~  254 (612)
                      |++||++|+.+|++|+|||||+|||+.++..+.+.|+++   +.|||++|||+. .+.++||++++|++|+++ +.|+++
T Consensus       446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~  521 (530)
T PRK15064        446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYE  521 (530)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHH
Confidence            999999999999999999999999999999999999886   359999999976 678899999999999998 778766


Q ss_pred             Ch
Q psy12625        255 GL  256 (612)
Q Consensus       255 ~~  256 (612)
                      +.
T Consensus       522 ~~  523 (530)
T PRK15064        522 EY  523 (530)
T ss_pred             HH
Confidence            44

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=311.93  Aligned_cols=232  Identities=23%  Similarity=0.334  Sum_probs=197.4

Q ss_pred             eEEEEeEEEEEEeecc-----------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc
Q psy12625         20 NLLFQDISYSALYYDT-----------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN   88 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~-----------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~   88 (612)
                      .+..+||++.|.....           ++.++....+++|+||+|++|++++.+|||||||||+||+|+|++.|     .
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-----~   77 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-----T   77 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-----C
Confidence            4677888887754321           12222345689999999999999999999999999999999999987     6


Q ss_pred             eeEEEECCEeccc-hHhhccceEEEc-cCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625         89 SGYIEINETRLQD-HRMLRKESCYIM-QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus        89 ~G~I~~~g~~~~~-~~~~~~~i~yv~-Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      +|.|.++|....+ .+.+-+.+++|+ |.-.+.-.+.+.|.+.....+.   .++.++-+++.+.+.+.++|+...+.++
T Consensus        78 ~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v  154 (325)
T COG4586          78 SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV  154 (325)
T ss_pred             CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh
Confidence            8999999987533 345667788775 4455655667888887765554   5677788899999999999999999999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +.||-|||.|+.||.+|+++|++|||||||=|||..++..+.+.|++..+ .+.||+.|||+.+ .+.++||||++|++|
T Consensus       155 r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~G  233 (325)
T COG4586         155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQG  233 (325)
T ss_pred             hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCC
Confidence            99999999999999999999999999999999999999999999999986 7999999999987 689999999999999


Q ss_pred             eEEEecCccChhhHH
Q psy12625        246 YCTYQGTVPGLVPYL  260 (612)
Q Consensus       246 ~iv~~G~~~~~~~~f  260 (612)
                      +++|+|+.+++.+.|
T Consensus       234 qlv~dg~l~~l~~~f  248 (325)
T COG4586         234 QLVFDGTLAQLQEQF  248 (325)
T ss_pred             cEeecccHHHHHHHh
Confidence            999999998887654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=4.9e-38  Score=353.68  Aligned_cols=210  Identities=26%  Similarity=0.369  Sum_probs=175.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||+++|.         +++++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.+++. 
T Consensus         3 ~~i~~~nls~~~~---------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~~-   67 (552)
T TIGR03719         3 YIYTMNRVSKVVP---------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----FNGEARPAPG-   67 (552)
T ss_pred             EEEEEeeEEEecC---------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCC-
Confidence            3689999999881         146799999999999999999999999999999999999886     6899998751 


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh-c------------cCCCCCHH--------------------HH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-K------------LGNQYSRK--------------------AK  145 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~------------~~~~~~~~--------------------~~  145 (612)
                              ..+|||+|++.+++.+||+||+.++... +            ......+.                    ..
T Consensus        68 --------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (552)
T TIGR03719        68 --------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL  139 (552)
T ss_pred             --------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchh
Confidence                    3599999999999999999999875321 0            00000000                    01


Q ss_pred             HHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy12625        146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL  225 (612)
Q Consensus       146 ~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~  225 (612)
                      +.+++++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++   +.|||+++
T Consensus       140 ~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiis  215 (552)
T TIGR03719       140 DRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVT  215 (552)
T ss_pred             HHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEe
Confidence            245677888899964 68899999999999999999999999999999999999999999999999876   35999999


Q ss_pred             cCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625        226 HQPSASLLNMADYLYVLTEGYCT-YQGTVPGL  256 (612)
Q Consensus       226 H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~  256 (612)
                      ||+. .+..+||++++|++|+++ +.|+.++.
T Consensus       216 Hd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~  246 (552)
T TIGR03719       216 HDRY-FLDNVAGWILELDRGRGIPWEGNYSSW  246 (552)
T ss_pred             CCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence            9976 678899999999999976 77877654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=3.3e-38  Score=312.76  Aligned_cols=195  Identities=20%  Similarity=0.178  Sum_probs=163.0

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-ECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-INETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ++|+|||+++++||+++|+||||||||||+|+|+|+.+|     .+|+|. ++|..+           .+.+++.+++.+
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----~sG~i~~~~~~~~-----------~~~~~~~l~~~l   64 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-----DEGDFIGLRGDAL-----------PLGANSFILPGL   64 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCCCEEEecCcee-----------ccccccccCCcC
Confidence            379999999999999999999999999999999999886     589997 777542           123456788899


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                      |++||+.+.....   ....++   ..+.+.+.++|+...++++++||||||||++||++|+.+|++++|||||++||+.
T Consensus        65 tv~enl~~~~~~~---~~~~~~---~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~  138 (213)
T PRK15177         65 TGEENARMMASLY---GLDGDE---FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA  138 (213)
T ss_pred             cHHHHHHHHHHHc---CCCHHH---HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence            9999999866543   122222   2234456678888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHhh
Q psy12625        203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSD  262 (612)
Q Consensus       203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~  262 (612)
                      ++..+.+.+.+..+ ++++|+++|++. .+.++||++++|++|++++.|+.++...+++.
T Consensus       139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  196 (213)
T PRK15177        139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ  196 (213)
T ss_pred             HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence            99999998865443 367999999986 57789999999999999999999988777654

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.6e-38  Score=390.67  Aligned_cols=212  Identities=20%  Similarity=0.239  Sum_probs=179.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|..        +.+++|+|+|++|++||.+||+||||||||||+++|.|+++|     .+|+|.+||.+
T Consensus      1233 g~I~f~nVsf~Y~~--------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~IdG~d 1299 (1495)
T PLN03232       1233 GSIKFEDVHLRYRP--------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-----EKGRIMIDDCD 1299 (1495)
T ss_pred             CcEEEEEEEEEECC--------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCceEEECCEE
Confidence            46999999999832        346799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~  165 (612)
                      +.+  .+.+|++++|||||+.+|+ -|++|||.+..      ..++    +.+.++++..++.+           ..+..
T Consensus      1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232       1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred             hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence            864  3678999999999999998 49999997531      2222    34555566555533           22333


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++.  ..-||+|++|++|
T Consensus      1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G 1445 (1495)
T PLN03232       1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSG 1445 (1495)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECC
Confidence            34799999999999999999999999999999999999999999999874 57999999999863  4569999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+++++.
T Consensus      1446 ~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1446 QVLEYDSPQELL 1457 (1495)
T ss_pred             EEEEECCHHHHH
Confidence            999999999875

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=6.1e-38  Score=352.80  Aligned_cols=202  Identities=23%  Similarity=0.279  Sum_probs=172.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|+         +++++|+|+|+++++||.++|+||||||||||+++|+|+++|     .+|+|.+||++
T Consensus       321 ~~i~~~~v~f~y~---------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~  386 (547)
T PRK10522        321 QTLELRNVTFAYQ---------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILLDGKP  386 (547)
T ss_pred             ceEEEEEEEEEeC---------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCEE
Confidence            3699999999983         234699999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-----cCCCCh
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-----TKHLSG  171 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----~~~LSg  171 (612)
                      +.+  ...+++.++||+|++.+|+ .|++||   .      .    ...++.+++.++.+|+.+..+..     ..+|||
T Consensus       387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg  452 (547)
T PRK10522        387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSK  452 (547)
T ss_pred             CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence            764  3567889999999998887 467666   0      0    12345678889999987654322     247999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||++||||++.+|++++||||||+||+.++..+.+.+.+..+ +++|+|+++|+++  ..+.||++++|++|+++..
T Consensus       453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999987654 5899999999974  4678999999999999876

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.8e-38  Score=356.00  Aligned_cols=185  Identities=28%  Similarity=0.428  Sum_probs=156.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+|+|+         +++++|+|+|+++++||.+||+||||||||||+|+|+|+.+|     .+|+|.+||.+
T Consensus       333 ~~I~~~~vsf~Y~---------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~i~g~~  398 (529)
T TIGR02868       333 PTLELRDLSFGYP---------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-----LQGEVTLDGVS  398 (529)
T ss_pred             ceEEEEEEEEecC---------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence            4699999999983         224699999999999999999999999999999999999986     68999999998


Q ss_pred             ccch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC---
Q psy12625         99 LQDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK---  167 (612)
Q Consensus        99 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~---  167 (612)
                      +.+. +.+|+.++||+|++.+|+ -|++||+.++.    + ..+    +++++++++..|+++.       .|+.++   
T Consensus       399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G  468 (529)
T TIGR02868       399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG  468 (529)
T ss_pred             hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence            7543 557889999999999997 59999998752    1 122    3456667777666542       245443   


Q ss_pred             -CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        168 -HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       168 -~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                       +||||||||++|||||+.+|+|++||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus       469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence             599999999999999999999999999999999999999999999864 578999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=9.4e-38  Score=319.29  Aligned_cols=230  Identities=26%  Similarity=0.345  Sum_probs=198.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.+..      ..+...++++|||++++||.+||+|.||||||-..+.+.|+++......-+|+|.++|++
T Consensus         5 ~lL~v~nLsV~f~~------~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d   78 (534)
T COG4172           5 PLLSIRNLSVAFHQ------EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED   78 (534)
T ss_pred             cceeeeccEEEEec------CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh
Confidence            35899999999843      336678999999999999999999999999999999999998743333468999999998


Q ss_pred             ccch--Hh---hc-cceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc---cCcccC
Q psy12625         99 LQDH--RM---LR-KESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC---KNTLTK  167 (612)
Q Consensus        99 ~~~~--~~---~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~~~  167 (612)
                      +...  +.   .| .+|+++||+|  .+.|..|+...+.-..++  ....++++.++++.++|+.+|+.+.   .+.++.
T Consensus        79 ll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH  156 (534)
T COG4172          79 LLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRLDAYPH  156 (534)
T ss_pred             hhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence            7432  22   33 4799999998  577778888877665444  3456778889999999999999764   577899


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      +|||||||||.||+||+++|++||.||||++||...+.+|+++|++|.+ .|.+++++|||.. -+.+++|||++|.+|+
T Consensus       157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~  235 (534)
T COG4172         157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGE  235 (534)
T ss_pred             ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccE
Confidence            9999999999999999999999999999999999999999999999976 6999999999986 6889999999999999


Q ss_pred             EEEecCccChh
Q psy12625        247 CTYQGTVPGLV  257 (612)
Q Consensus       247 iv~~G~~~~~~  257 (612)
                      +++.|+.+++.
T Consensus       236 ivE~~~t~~lF  246 (534)
T COG4172         236 IVETGTTETLF  246 (534)
T ss_pred             EeecCcHHHHh
Confidence            99999988764

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.6e-38  Score=389.21  Aligned_cols=213  Identities=22%  Similarity=0.241  Sum_probs=180.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|..        +.+++|+|+|++|+|||.+||+|+||||||||+++|.|+++|     .+|+|.+||.+
T Consensus      1236 g~I~f~nVsf~Y~~--------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-----~~G~I~IDG~d 1302 (1622)
T PLN03130       1236 GSIKFEDVVLRYRP--------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-----ERGRILIDGCD 1302 (1622)
T ss_pred             CcEEEEEEEEEeCC--------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-----CCceEEECCEe
Confidence            46999999999832        345799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+  .+.+|+++++||||+.+|+. |++|||.+..      ..+    ++.+.++++..++.+.       .|+.+   
T Consensus      1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130       1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred             cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence            865  36789999999999999984 9999997531      122    2345555665555322       23333   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++.  ..-||||++|++|
T Consensus      1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G 1448 (1622)
T PLN03130       1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAG 1448 (1622)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECC
Confidence             4799999999999999999999999999999999999999999999875 57999999999863  4569999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+++++.+
T Consensus      1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred             EEEEeCCHHHHHh
Confidence            9999999998753

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.7e-37  Score=349.48  Aligned_cols=207  Identities=21%  Similarity=0.240  Sum_probs=173.0

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+..     +..++++|+|+|+++++||.++|+||||||||||+++|+|+.+|     .+|+|.+||.+
T Consensus       336 ~~i~~~~v~f~y~~~-----~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-----~~G~i~~~g~~  405 (555)
T TIGR01194       336 DSIELKDVHMNPKAP-----EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-----QEGEILLDGAA  405 (555)
T ss_pred             ceEEEEEEEEEeCCC-----CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence            469999999998320     00124699999999999999999999999999999999999986     68999999999


Q ss_pred             ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc------CCCC
Q psy12625         99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT------KHLS  170 (612)
Q Consensus        99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LS  170 (612)
                      +.+.  ..+++.++||+|++.+|+ -|++||.      .      +...++++++.++.+++.+..+..+      .+||
T Consensus       406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS  472 (555)
T TIGR01194       406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS  472 (555)
T ss_pred             CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c------cchhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence            7643  567889999999998886 4777773      1      1123456788999999987654433      4699


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR-DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      ||||||++||||++.+|++++||||||+||+.++..+.+.+. .++.+|+|+|+++|+++  ..+.||+|++|++|+++.
T Consensus       473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVK  550 (555)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999998664 55567899999999975  467899999999999876


Q ss_pred             e
Q psy12625        250 Q  250 (612)
Q Consensus       250 ~  250 (612)
                      .
T Consensus       551 ~  551 (555)
T TIGR01194       551 D  551 (555)
T ss_pred             e
Confidence            4

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=7.3e-38  Score=328.85  Aligned_cols=225  Identities=27%  Similarity=0.412  Sum_probs=190.4

Q ss_pred             CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         14 SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        14 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      ++.+...|.++++++.-        +..++++|+|+||++++||.++|+||||||||||.|+|.|..+|     .+|.|.
T Consensus       328 LP~P~g~L~Ve~l~~~P--------Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-----~~G~VR  394 (580)
T COG4618         328 LPAPQGALSVERLTAAP--------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-----TSGSVR  394 (580)
T ss_pred             CCCCCceeeEeeeeecC--------CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-----CCCcEE
Confidence            46677889999999843        23568999999999999999999999999999999999999986     689999


Q ss_pred             ECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHH-----HHHHHHHHHHHHcCCccccCccc
Q psy12625         94 INETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRK-----AKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus        94 ~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      +||-++..  .+.+-+.|||.||+-.+|+ -||.||+.     |+.++.+.+     .+...+.+++-  .+.+-.||.+
T Consensus       395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~i  466 (580)
T COG4618         395 LDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRI  466 (580)
T ss_pred             ecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCcc
Confidence            99988754  3567789999999999998 69999984     222222221     12233455543  3445567777


Q ss_pred             C----CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        167 K----HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       167 ~----~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      +    .||||||||+++||||-.||.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+  +...+|+|++|
T Consensus       467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl  544 (580)
T COG4618         467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL  544 (580)
T ss_pred             CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeee
Confidence            6    59999999999999999999999999999999999999999999999999999999999985  58899999999


Q ss_pred             cCCeEEEecCccChhhHHh
Q psy12625        243 TEGYCTYQGTVPGLVPYLS  261 (612)
Q Consensus       243 ~~G~iv~~G~~~~~~~~f~  261 (612)
                      ++|++-.+|+.+|++..+.
T Consensus       545 ~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         545 QDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             cCChHHhcCCHHHHHHHhc
Confidence            9999999999999987654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1e-37  Score=384.00  Aligned_cols=213  Identities=22%  Similarity=0.221  Sum_probs=180.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        +.+++|+|+|++++|||.+||+|+||||||||+++|.|+++|     .+|+|.+||.+
T Consensus      1283 g~I~f~nVsf~Y~~--------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-----~~G~I~IdG~d 1349 (1522)
T TIGR00957      1283 GRVEFRNYCLRYRE--------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-----AEGEIIIDGLN 1349 (1522)
T ss_pred             CcEEEEEEEEEeCC--------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-----CCCeEEECCEE
Confidence            47999999999832        335799999999999999999999999999999999999986     68999999999


Q ss_pred             ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+.  +.+|+++++||||+.+|+. |++|||....      ..++    +.+.++++..++.+.       .|+.+   
T Consensus      1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957      1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred             ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence            8653  6789999999999999985 9999996311      2232    335556666555432       34444   


Q ss_pred             -CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 -KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                       .+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++.  ..-+|||++|++|
T Consensus      1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G 1495 (1522)
T TIGR00957      1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKG 1495 (1522)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECC
Confidence             4699999999999999999999999999999999999999999998864 57999999999863  5679999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+++++.+
T Consensus      1496 ~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1496 EVAEFGAPSNLLQ 1508 (1522)
T ss_pred             EEEEECCHHHHHh
Confidence            9999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=4.6e-37  Score=345.75  Aligned_cols=201  Identities=24%  Similarity=0.298  Sum_probs=174.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|+++.|          ++. .|+++|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++  
T Consensus       338 ~~~l~~~~ls~~~----------~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----~~G~I~~~--  399 (590)
T PRK13409        338 ETLVEYPDLTKKL----------GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-----DEGEVDPE--  399 (590)
T ss_pred             ceEEEEcceEEEE----------CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEEe--
Confidence            3469999999887          233 48999999999999999999999999999999999986     58999885  


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                               ..++|++|+..+.+.+||+|++.+....     ..   ....++++++.+||.+..++++.+|||||||||
T Consensus       400 ---------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRv  462 (590)
T PRK13409        400 ---------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRV  462 (590)
T ss_pred             ---------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHH
Confidence                     1489999998888899999999875221     11   123568899999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      +||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++||+. .+..+||++++|+ |++...|...+
T Consensus       463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~~  539 (590)
T PRK13409        463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHASG  539 (590)
T ss_pred             HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecCC
Confidence            999999999999999999999999999999999999987 5899999999976 6788999999996 47777776443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.1e-37  Score=346.37  Aligned_cols=203  Identities=23%  Similarity=0.353  Sum_probs=171.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.+++ +
T Consensus       323 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----~~G~i~~~~-~  386 (556)
T PRK11819        323 KVIEAENLSKSF----------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-----DSGTIKIGE-T  386 (556)
T ss_pred             eEEEEEeEEEEE----------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECC-c
Confidence            469999999987          456799999999999999999999999999999999999886     689999854 2


Q ss_pred             ccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625         99 LQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR  176 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR  176 (612)
                              ..+||++|++ .+++.+||+||+.+.....   ....  .+..++++++.+|+.+ ..++++++||||||||
T Consensus       387 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr  453 (556)
T PRK11819        387 --------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNR  453 (556)
T ss_pred             --------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---cccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence                    1499999996 6788899999998764321   1111  1223557899999974 5799999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEE-EecCcc
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCT-YQGTVP  254 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~  254 (612)
                      |+||++|+.+|++|+|||||+|||+.++..+.+.|+++.  | |||++|||+. .+.++||++++|++ |++. +.|+.+
T Consensus       454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~  529 (556)
T PRK11819        454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQ  529 (556)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHH
Confidence            999999999999999999999999999999999999873  4 8999999976 67889999999986 7776 455443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=2e-37  Score=314.92  Aligned_cols=192  Identities=27%  Similarity=0.385  Sum_probs=162.4

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-----------ECCEeccch-Hh-hc--c
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-----------INETRLQDH-RM-LR--K  107 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-----------~~g~~~~~~-~~-~~--~  107 (612)
                      +.+|+|+| .+++||+++|+||||||||||||+|+|+.+|     .+|+|.           ++|+++.+. .. .+  .
T Consensus        14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   87 (255)
T cd03236          14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-----NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDV   87 (255)
T ss_pred             chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-----CCceEeeccccchhhhhccCchhhhhhHHhhhccc
Confidence            35999999 5999999999999999999999999999986     589996           788775432 11 11  2


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCC
Q psy12625        108 ESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP  187 (612)
Q Consensus       108 ~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p  187 (612)
                      .++|++|+...++ .++.+++....  .      ....++.+.++++.+|+++..++.+.+||||||||++||++|+.+|
T Consensus        88 ~i~~~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  158 (255)
T cd03236          88 KVIVKPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA  158 (255)
T ss_pred             ceeeecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            4789999888877 48888876532  1      1233467889999999999899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      +++++||||+|||+.++..+.+.|++++++++|||+++|++. .+.++||++++|+ |++.+.|
T Consensus       159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence            999999999999999999999999999888899999999975 5777899999995 5565544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.2e-37  Score=380.47  Aligned_cols=212  Identities=22%  Similarity=0.253  Sum_probs=181.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        +.+.+|+|||++|++||.+||+|+||||||||+++|.|+++|     .+|+|.+||.+
T Consensus      1307 G~I~f~nVsf~Y~~--------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-----~~G~I~IDG~d 1373 (1560)
T PTZ00243       1307 GSLVFEGVQMRYRE--------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-----CGGEIRVNGRE 1373 (1560)
T ss_pred             CeEEEEEEEEEeCC--------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEE
Confidence            46999999999832        345699999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCccc---
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLT---  166 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~---  166 (612)
                      +.+  .+.+|+.++||||++.+|+ -|++|||...      ...+    ++.+.++++..|+.+.       .|+.+   
T Consensus      1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243       1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred             cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence            864  3678999999999999998 4999999531      1222    3457777777777543       34444   


Q ss_pred             -CCCChhhhhHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        167 -KHLSGGQKKRLSIALELLSN-PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       167 -~~LSgGerqRv~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                       .+||||||||++|||||+.+ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++  ....||+|++|++
T Consensus      1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243       1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence             36999999999999999996 89999999999999999999999999864 4799999999985  3578999999999


Q ss_pred             CeEEEecCccChh
Q psy12625        245 GYCTYQGTVPGLV  257 (612)
Q Consensus       245 G~iv~~G~~~~~~  257 (612)
                      |++++.|+++++.
T Consensus      1520 G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1520 GAVAEMGSPRELV 1532 (1560)
T ss_pred             CEEEEECCHHHHH
Confidence            9999999999875

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.5e-37  Score=377.22  Aligned_cols=211  Identities=25%  Similarity=0.400  Sum_probs=172.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE-CCEe
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~-~g~~   98 (612)
                      .|+++||+++|+.       ..++++|+|+|+++++||++||+||||||||||+++|+|+++|     .+|+|.+ +|.+
T Consensus       382 ~I~~~nVsf~Y~~-------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----~~G~I~i~~g~~  449 (1466)
T PTZ00265        382 KIQFKNVRFHYDT-------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-----TEGDIIINDSHN  449 (1466)
T ss_pred             cEEEEEEEEEcCC-------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-----CCCeEEEeCCcc
Confidence            6999999999832       1235799999999999999999999999999999999999986     6899999 4677


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHh-cc--------CC-----------------------------
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KL--------GN-----------------------------  138 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~~--------~~-----------------------------  138 (612)
                      +.+  ...+|+.+|||+|++.+|+ .|++||+.++... +.        ..                             
T Consensus       450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (1466)
T PTZ00265        450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT  528 (1466)
T ss_pred             hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence            643  3457889999999999997 5999999986310 00        00                             


Q ss_pred             -CC---------CHHHHHHHHHHHHHHcCCccc-----------cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        139 -QY---------SRKAKESKVDSIADSLSISTC-----------KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       139 -~~---------~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                       ..         .....++.+.++++.+++.+.           .+....+||||||||++|||||+.+|+|||||||||
T Consensus       529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS  608 (1466)
T PTZ00265        529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS  608 (1466)
T ss_pred             cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence             00         001123557777777776543           234456799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        198 GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +||+.++..+.+.|+++++ +|+|+|+++|+++ . .+.||+|++|++|
T Consensus       609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~-i~~aD~Iivl~~g  655 (1466)
T PTZ00265        609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-T-IRYANTIFVLSNR  655 (1466)
T ss_pred             ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-H-HHhCCEEEEEeCC
Confidence            9999999999999999976 6899999999986 3 4789999999986

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=8.8e-37  Score=343.51  Aligned_cols=202  Identities=24%  Similarity=0.364  Sum_probs=170.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.+++ +
T Consensus       321 ~~l~~~~l~~~~----------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----~~G~i~~~~-~  384 (552)
T TIGR03719       321 KVIEAENLSKGF----------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-----DSGTIKIGE-T  384 (552)
T ss_pred             eEEEEeeEEEEE----------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCeEEEECC-c
Confidence            469999999987          456799999999999999999999999999999999999886     689999854 2


Q ss_pred             ccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625         99 LQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR  176 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR  176 (612)
                              ..+||++|++ .+++.+||.|++.+.....   .....  +.+++++++.+|+.+ ..++++++||||||||
T Consensus       385 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr  451 (552)
T TIGR03719       385 --------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR  451 (552)
T ss_pred             --------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence                    1599999996 4788899999998764221   11111  224567899999974 5799999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC-CeEE-EecCc
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE-GYCT-YQGTV  253 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~  253 (612)
                      |+||++|+.+|++|||||||+|||+.++..+.+.|+++.  + |||++|||+. .+.++||++++|++ |++. +.|+.
T Consensus       452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~  526 (552)
T TIGR03719       452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY  526 (552)
T ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence            999999999999999999999999999999999999873  3 8999999975 67889999999986 5766 44544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0056|consensus

Probab=100.00  E-value=5.1e-38  Score=326.27  Aligned_cols=232  Identities=28%  Similarity=0.368  Sum_probs=187.7

Q ss_pred             hhhhhhhccC---CCCCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625          4 EEAELQDLKK---SPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus         4 ~~~~~~~~~~---~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ||.++.+.++   +..++..++++||++.|.         .+|++|+||||++.||+.+|++||||+||||++|+|..+.
T Consensus       518 ee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~---------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff  588 (790)
T KOG0056|consen  518 EEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD---------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF  588 (790)
T ss_pred             cCchhhcCCCCCCccccCCeEEEEEeEEecC---------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence            4445544443   356677899999999984         4688999999999999999999999999999999999987


Q ss_pred             CCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHH--HHH-HHH
Q psy12625         81 RPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKV--DSI-ADS  155 (612)
Q Consensus        81 ~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v--~~~-l~~  155 (612)
                      +-     .+|.|.+||+++++.  ..+|+.||.||||..+|+ -|+..|++++.   .  ..+.++..+.+  .++ =+.
T Consensus       589 dv-----~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak---~--~AsneevyaAAkAA~IHdrI  657 (790)
T KOG0056|consen  589 DV-----NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK---P--SASNEEVYAAAKAAQIHDRI  657 (790)
T ss_pred             hc-----cCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC---C--CCChHHHHHHHHHhhHHHHH
Confidence            63     689999999998653  678999999999999987 58888888752   1  12223222211  111 123


Q ss_pred             cCCccccCcccCC----CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625        156 LSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS  231 (612)
Q Consensus       156 lgL~~~~~~~~~~----LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~  231 (612)
                      +++.+-.++++|+    |||||||||+|||+++.+|.+++|||.||+||..+.+.|-..|.++++. +|-|++.|..+. 
T Consensus       658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLST-  735 (790)
T KOG0056|consen  658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLST-  735 (790)
T ss_pred             hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehh-
Confidence            4666667777774    9999999999999999999999999999999999999999999999874 566666798764 


Q ss_pred             HHhcccceeeecCCeEEEecCccChhh
Q psy12625        232 LLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       232 i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                       .--+|.|+++++|+|++.|..+|+..
T Consensus       736 -ivnAD~ILvi~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  736 -IVNADLILVISNGRIVERGRHEELLK  761 (790)
T ss_pred             -eecccEEEEEeCCeEeecCcHHHHHh
Confidence             45689999999999999999888764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.1e-36  Score=373.80  Aligned_cols=212  Identities=22%  Similarity=0.278  Sum_probs=181.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|..        +.+.+|+|+|++|++||.+||+|+||||||||+++|.|+.+      .+|+|.+||.+
T Consensus      1216 g~I~f~nVs~~Y~~--------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~d 1281 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTE--------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVS 1281 (1490)
T ss_pred             CeEEEEEEEEEeCC--------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEE
Confidence            47999999999832        45789999999999999999999999999999999999975      37999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC--
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK--  167 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~--  167 (612)
                      +.+  ...+|++++||||++.+|+ -|++|||....      ..+    ++.+.++++..+|.+.       .|+.++  
T Consensus      1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271      1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred             cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence            864  3678999999999999998 59999995421      122    3567778888777543       344443  


Q ss_pred             --CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       168 --~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                        +||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|.++  ....||+|++|++|
T Consensus      1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271      1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGS 1427 (1490)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECC
Confidence              699999999999999999999999999999999999999999999864 4799999999985  35669999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+++++.+
T Consensus      1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred             EEEEeCCHHHHHc
Confidence            9999999988753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=345.28  Aligned_cols=202  Identities=27%  Similarity=0.387  Sum_probs=172.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|     .+|+|.+++. 
T Consensus       311 ~~l~~~~l~~~y----------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~-  374 (638)
T PRK10636        311 PLLKMEKVSAGY----------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-----VSGEIGLAKG-  374 (638)
T ss_pred             ceEEEEeeEEEe----------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEEECCC-
Confidence            469999999987          456799999999999999999999999999999999999886     6899998742 


Q ss_pred             ccchHhhccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625         99 LQDHRMLRKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq  175 (612)
                              ..+||++|+.  .+.+..|+.+++.-   ..      ....++++.++++.+|+. +..+++++.|||||||
T Consensus       375 --------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekq  437 (638)
T PRK10636        375 --------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKA  437 (638)
T ss_pred             --------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHH
Confidence                    2589999974  34556677776531   11      112345688999999996 4689999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~  254 (612)
                      ||+||++|+.+|++|||||||+|||+.++..+.+.|+++  .| |||++|||+. .+.++||++++|++|+++ +.|+.+
T Consensus       438 Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~  513 (638)
T PRK10636        438 RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLE  513 (638)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHH
Confidence            999999999999999999999999999999999999987  34 9999999975 678899999999999997 888877


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      +..
T Consensus       514 ~~~  516 (638)
T PRK10636        514 DYQ  516 (638)
T ss_pred             HHH
Confidence            653

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=287.61  Aligned_cols=221  Identities=23%  Similarity=0.308  Sum_probs=180.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|+++.+..     -...++++|+++|+++.+|+++.|+|.||||||||+|+|+|.+.|     ++|+|.++|.++.
T Consensus         2 i~~~~~~~~f~~-----g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-----t~G~I~Idg~dVt   71 (263)
T COG1101           2 ISLSNATKTFFK-----GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----TSGQILIDGVDVT   71 (263)
T ss_pred             cccccceeeecC-----CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-----CCceEEECceecc
Confidence            456677766522     123568899999999999999999999999999999999999886     6899999999986


Q ss_pred             chHhh--ccceEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHHc--CCccccCcccCCCCh
Q psy12625        101 DHRML--RKESCYIMQDN--LLQELLTVEESLTVAAHLKLGNQYSR---KAKESKVDSIADSL--SISTCKNTLTKHLSG  171 (612)
Q Consensus       101 ~~~~~--~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSg  171 (612)
                      .....  ...++-|+|||  -..+.+|++||+.++..-...+.++.   ...++...+-++.+  ||++..+++++-|||
T Consensus        72 k~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSG  151 (263)
T COG1101          72 KKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSG  151 (263)
T ss_pred             cCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccc
Confidence            54322  34688899997  46899999999998764311122222   12233344445554  678899999999999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||-++++.|-+..|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||+.. +..++.+|+++|++|+|+.+
T Consensus       152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEE
Confidence            999999999999999999999999999999999999999999976 6789999999987 57899999999999999976


Q ss_pred             cC
Q psy12625        251 GT  252 (612)
Q Consensus       251 G~  252 (612)
                      -.
T Consensus       231 v~  232 (263)
T COG1101         231 VT  232 (263)
T ss_pred             cc
Confidence            43

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.1e-36  Score=279.67  Aligned_cols=230  Identities=24%  Similarity=0.350  Sum_probs=196.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|+++++...... ++.....+++.|||++++|+.+||+|.||||||||.|+|+|.++|     ++|+|.+||+++
T Consensus         4 LLeV~nLsKtF~~~~~l-f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-----TsG~il~n~~~L   77 (267)
T COG4167           4 LLEVRNLSKTFRYRTGL-FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGEILINDHPL   77 (267)
T ss_pred             hhhhhhhhhhhhhhhhh-hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-----CCceEEECCccc
Confidence            47789999887432111 122345689999999999999999999999999999999999987     689999999986


Q ss_pred             cc--hHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-ccccCcccCCCChhhh
Q psy12625        100 QD--HRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~LSgGer  174 (612)
                      .-  .....+.|-+++||++  +.|.+.+.+-+....++.  .++..+++.+++.+.++.+|| .+.++-++..||-|||
T Consensus        78 ~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK  155 (267)
T COG4167          78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK  155 (267)
T ss_pred             cccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence            42  2333478999999984  667777877777765544  356677888999999999997 4578889999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||++||||+.+|+|++.||...+||...+.++++++-+|.+ .|.+-|.++.+.. .+.+++|+|+||++|++++.|++
T Consensus       156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t  234 (267)
T COG4167         156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGST  234 (267)
T ss_pred             HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCCh
Confidence            999999999999999999999999999999999999999986 6999999998875 68999999999999999999999


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      .++..
T Consensus       235 ~~v~a  239 (267)
T COG4167         235 ADVLA  239 (267)
T ss_pred             hhhhc
Confidence            87743

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=272.63  Aligned_cols=194  Identities=23%  Similarity=0.332  Sum_probs=171.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      ++.++||+...          ++...|.|+|++|.+||++-|||||||||||||..+.|.+.+.  -..+|++.+|++++
T Consensus         2 ~l~l~nvsl~l----------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~~~~l   69 (213)
T COG4136           2 MLCLKNVSLRL----------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLNEQRL   69 (213)
T ss_pred             ceeeeeeeecC----------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC--cceeeEEEECCeec
Confidence            46788988654          5677999999999999999999999999999999999988763  24799999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .....-+|++|..+||+.+||.++|.+|+.|+.    |...+-..+++.++..+++.||+...++.+.+||||||-||++
T Consensus        70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL  145 (213)
T COG4136          70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL  145 (213)
T ss_pred             cccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence            655667899999999999999999999998863    3344445667788999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCc
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPS  229 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~  229 (612)
                      -|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||..
T Consensus       146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~  196 (213)
T COG4136         146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ  196 (213)
T ss_pred             HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence            99999999999999999999999999999987654 447999999999965

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.1e-35  Score=289.56  Aligned_cols=225  Identities=21%  Similarity=0.293  Sum_probs=196.2

Q ss_pred             eeEEEEeEEEEEEeeccc-------------c-ccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC
Q psy12625         19 FNLLFQDISYSALYYDTH-------------S-YSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK   84 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~-------------~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~   84 (612)
                      +.|+++||++.++.+...             . .......+|+||||++++||.++|+|+||||||||||+|+|.++|  
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--   79 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--   79 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--
Confidence            368899999998766410             1 123456799999999999999999999999999999999999997  


Q ss_pred             CCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625         85 TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT  164 (612)
Q Consensus        85 ~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  164 (612)
                         ++|+|.++|+- ...  +--..|       +.|.+|.+||+.+-..+.   .+++++.+++++++++.-+|.+..|+
T Consensus        80 ---t~G~v~v~G~v-~~l--i~lg~G-------f~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~  143 (249)
T COG1134          80 ---TSGKVKVTGKV-APL--IELGAG-------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQ  143 (249)
T ss_pred             ---CCceEEEcceE-ehh--hhcccC-------CCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhC
Confidence               68999999975 211  111223       346699999999876553   46788899999999999999999999


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +++++|.|++-|++.|.|...+|+||++||-.+--|+.-+++..+.++++.++++|||+++||+. .+.++||++++|++
T Consensus       144 PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~  222 (249)
T COG1134         144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH  222 (249)
T ss_pred             chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence            99999999999999999999999999999999999999999999999999888899999999986 69999999999999


Q ss_pred             CeEEEecCccChhhHHhh
Q psy12625        245 GYCTYQGTVPGLVPYLSD  262 (612)
Q Consensus       245 G~iv~~G~~~~~~~~f~~  262 (612)
                      |++...|+++++.++++.
T Consensus       223 G~i~~~G~~~~vi~~Y~~  240 (249)
T COG1134         223 GQIRMEGSPEEVIPAYEE  240 (249)
T ss_pred             CEEEEcCCHHHHHHHHHH
Confidence            999999999999987654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=6.1e-36  Score=278.34  Aligned_cols=144  Identities=33%  Similarity=0.477  Sum_probs=131.7

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ++++|+++.+          +++.+++++|+++++||+++|+||||||||||+++|+|+.+|     .+|+|.++|+   
T Consensus         1 l~~~~l~~~~----------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----~~G~i~~~~~---   62 (144)
T cd03221           1 IELENLSKTY----------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-----DEGIVTWGST---   62 (144)
T ss_pred             CEEEEEEEEE----------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CceEEEECCe---
Confidence            4678999887          335699999999999999999999999999999999999886     6899999984   


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                            +.++|++|                                                      ||+|||||++||
T Consensus        63 ------~~i~~~~~------------------------------------------------------lS~G~~~rv~la   82 (144)
T cd03221          63 ------VKIGYFEQ------------------------------------------------------LSGGEKMRLALA   82 (144)
T ss_pred             ------EEEEEEcc------------------------------------------------------CCHHHHHHHHHH
Confidence                  36899998                                                      999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      |+|+.+|+++++||||+|||+.++..+.+.++++   ++|+++++|++. ++.+.+|++++|++|+
T Consensus        83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~  144 (144)
T cd03221          83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence            9999999999999999999999999999999987   469999999976 6778899999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=7.5e-36  Score=340.69  Aligned_cols=204  Identities=25%  Similarity=0.362  Sum_probs=171.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||++.|          +++++|+|+|++|++|++++|+||||||||||||+|+|+.+|     .+|+|.+ |.
T Consensus       317 ~~~l~~~~l~~~~----------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----~~G~i~~-~~  380 (635)
T PRK11147        317 KIVFEMENVNYQI----------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-----DSGRIHC-GT  380 (635)
T ss_pred             CceEEEeeeEEEE----------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEE-CC
Confidence            3469999999987          456799999999999999999999999999999999999886     6899998 43


Q ss_pred             eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625         98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK  175 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq  175 (612)
                      ++        .+||++|+. .+++.+||.|++.+.... .  ...  .....+.++++.+++. +..++++++|||||||
T Consensus       381 ~~--------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq  447 (635)
T PRK11147        381 KL--------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERN  447 (635)
T ss_pred             Cc--------EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHH
Confidence            31        499999985 588899999999875321 1  111  1234678899999996 5689999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec-CCeEEE-ecCc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT-EGYCTY-QGTV  253 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~G~~  253 (612)
                      ||+||++|+.+|++|||||||+|||+.++..+.+.|+++   +.|||++|||.. .+..+||++++|+ +|++.. .|+.
T Consensus       448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y  523 (635)
T PRK11147        448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY  523 (635)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence            999999999999999999999999999999999999876   459999999975 6788999999997 798764 4443


Q ss_pred             c
Q psy12625        254 P  254 (612)
Q Consensus       254 ~  254 (612)
                      +
T Consensus       524 ~  524 (635)
T PRK11147        524 H  524 (635)
T ss_pred             H
Confidence            3

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=7.2e-36  Score=286.34  Aligned_cols=156  Identities=29%  Similarity=0.374  Sum_probs=136.9

Q ss_pred             EeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH
Q psy12625         24 QDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR  103 (612)
Q Consensus        24 ~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~  103 (612)
                      .||+++|          +++.+++++ +++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|.+     
T Consensus         4 ~~l~~~~----------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~-----   62 (177)
T cd03222           4 PDCVKRY----------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-----NGDNDEWDGIT-----   62 (177)
T ss_pred             CCeEEEE----------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCcEEEECCEE-----
Confidence            4677766          567789885 89999999999999999999999999999986     68999999864     


Q ss_pred             hhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH
Q psy12625        104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL  183 (612)
Q Consensus       104 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL  183 (612)
                           ++|++|+..                                                   ||||||||++|||+|
T Consensus        63 -----i~~~~q~~~---------------------------------------------------LSgGq~qrv~laral   86 (177)
T cd03222          63 -----PVYKPQYID---------------------------------------------------LSGGELQRVAIAAAL   86 (177)
T ss_pred             -----EEEEcccCC---------------------------------------------------CCHHHHHHHHHHHHH
Confidence                 788888532                                                   999999999999999


Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhcccceeeecCCeEEEe--cCccChh
Q psy12625        184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQ--GTVPGLV  257 (612)
Q Consensus       184 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~~~  257 (612)
                      +.+|++++|||||+|||+.++..+.+.++++++++ .|||+++|++. .+.++||++++|+++-.++.  |.|....
T Consensus        87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  162 (177)
T cd03222          87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKGTR  162 (177)
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcchh
Confidence            99999999999999999999999999999998764 89999999975 57779999999998876655  6665443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0059|consensus

Probab=100.00  E-value=4.8e-36  Score=351.79  Aligned_cols=225  Identities=27%  Similarity=0.360  Sum_probs=205.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..+..+|+++.|..        ..+ +++++|+.|++||+.+++|||||||||++|+|.|..+|     ++|++.++|.+
T Consensus       563 ~~~~~~~L~k~y~~--------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-----t~G~a~i~g~~  628 (885)
T KOG0059|consen  563 SALVLNNLSKVYGG--------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-----TSGEALIKGHD  628 (885)
T ss_pred             ceEEEcceeeeecc--------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-----CcceEEEecCc
Confidence            46888999988732        122 99999999999999999999999999999999999886     68999999998


Q ss_pred             ccch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625         99 LQDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus        99 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      +...   ...++.+||+||+|.+++.+|.+|++.+.++++   +.++.+.++.++..++.+||.+++|+.++.+|||+||
T Consensus       629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kR  705 (885)
T KOG0059|consen  629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKR  705 (885)
T ss_pred             cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchh
Confidence            7532   336889999999999999999999999999987   4566677788999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |+++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.||.|||..+ +...+|||+.+|.+|++...|++++
T Consensus       706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~  784 (885)
T KOG0059|consen  706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE  784 (885)
T ss_pred             hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence            999999999999999999999999999999999999999998889999999976 7899999999999999999999999


Q ss_pred             hhhHHh
Q psy12625        256 LVPYLS  261 (612)
Q Consensus       256 ~~~~f~  261 (612)
                      +...|.
T Consensus       785 LKsrfG  790 (885)
T KOG0059|consen  785 LKSRYG  790 (885)
T ss_pred             HHhhcC
Confidence            987664

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=338.85  Aligned_cols=207  Identities=19%  Similarity=0.255  Sum_probs=165.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|          +++.+|+||||+|++|++++|+||||||||||||+|+|..+|     ++|+|.++|.. 
T Consensus         1 ~i~i~nls~~~----------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----d~G~I~~~~~~-   64 (638)
T PRK10636          1 MIVFSSLQIRR----------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-----DGGSYTFPGNW-   64 (638)
T ss_pred             CEEEEEEEEEe----------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEecCCC-
Confidence            37899999988          567899999999999999999999999999999999999876     68999998742 


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHH-----------------------Hhcc-CCCCCHHHHHHHHHHHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAA-----------------------HLKL-GNQYSRKAKESKVDSIADS  155 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~  155 (612)
                              .++|++|++... ..|+.+.+.-..                       .+.. .......+.+.+++++++.
T Consensus        65 --------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  135 (638)
T PRK10636         65 --------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHG  135 (638)
T ss_pred             --------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence                    278888764332 245544332100                       0000 0000011234578899999


Q ss_pred             cCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625        156 LSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN  234 (612)
Q Consensus       156 lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~  234 (612)
                      +|+. +..++++++|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++   +.|||++|||.. .+.+
T Consensus       136 lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~  211 (638)
T PRK10636        136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDP  211 (638)
T ss_pred             CCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHH
Confidence            9997 5789999999999999999999999999999999999999999999999998875   469999999975 6788


Q ss_pred             cccceeeecCCeEE-EecCccC
Q psy12625        235 MADYLYVLTEGYCT-YQGTVPG  255 (612)
Q Consensus       235 ~~D~v~~L~~G~iv-~~G~~~~  255 (612)
                      +||++++|++|+++ |.|+.+.
T Consensus       212 ~~d~i~~L~~G~i~~~~g~~~~  233 (638)
T PRK10636        212 IVDKIIHIEQQSLFEYTGNYSS  233 (638)
T ss_pred             hcCEEEEEeCCEEEEecCCHHH
Confidence            99999999999986 6676553

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-36  Score=278.79  Aligned_cols=190  Identities=27%  Similarity=0.367  Sum_probs=168.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++.+||+.+.          +++.++.++||++.+||++-|.||||||||||||+|+|+.+|     .+|+|.++|.++
T Consensus         2 ~L~a~~L~~~R----------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-----~~G~v~~~~~~i   66 (209)
T COG4133           2 MLEAENLSCER----------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----DAGEVYWQGEPI   66 (209)
T ss_pred             cchhhhhhhcc----------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-----CCCeEEecCCCC
Confidence            45677887664          678899999999999999999999999999999999999997     689999999987


Q ss_pred             cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      .+. +.+++.+-|+-.++.+=+.+||.|||.|...+.-.      .....+.+.++.+||....|.++++||-||||||+
T Consensus        67 ~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA  140 (209)
T COG4133          67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA  140 (209)
T ss_pred             ccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHH
Confidence            554 34667788998888888999999999997665421      12456889999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      |||-.++.+++.|||||+++||......+-.++..-+++|-.||.+||||..
T Consensus       141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~  192 (209)
T COG4133         141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP  192 (209)
T ss_pred             HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence            9999999999999999999999999999999999888889999999999864

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.8e-35  Score=337.06  Aligned_cols=205  Identities=23%  Similarity=0.316  Sum_probs=168.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|.         +++.+|+|+|+++++|++++|+||||||||||||+|+|+.+|     .+|+|.+++. 
T Consensus       507 ~~L~~~~ls~~y~---------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----~~G~I~~~~~-  571 (718)
T PLN03073        507 PIISFSDASFGYP---------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-----SSGTVFRSAK-  571 (718)
T ss_pred             ceEEEEeeEEEeC---------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCceEEECCc-
Confidence            4699999999872         234699999999999999999999999999999999999986     5799988652 


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv  177 (612)
                              ..+||++|++  .+.+++.++.........+ ..    .+++++++++.+|+.+ ..++++++|||||||||
T Consensus       572 --------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv  636 (718)
T PLN03073        572 --------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  636 (718)
T ss_pred             --------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence                    3599999975  3445666664332111111 11    1356788999999984 67899999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~  256 (612)
                      +||++|+.+|++|||||||+|||+.++..+++.|++.  +| |||++|||+. .+..+||++++|++|+++ +.|+.++.
T Consensus       637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999999999999999999998888765  34 9999999976 678899999999999998 77766544


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       713 ~  713 (718)
T PLN03073        713 K  713 (718)
T ss_pred             H
Confidence            3

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.6e-35  Score=282.20  Aligned_cols=161  Identities=24%  Similarity=0.329  Sum_probs=137.3

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      ..+++|+|+|+++++|++++|+||||||||||||+|.+         .+|++.++|.. ..  ..++.++|++|      
T Consensus         6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------~~G~v~~~~~~-~~--~~~~~~~~~~q------   67 (176)
T cd03238           6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------ASGKARLISFL-PK--FSRNKLIFIDQ------   67 (176)
T ss_pred             eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------cCCcEEECCcc-cc--cccccEEEEhH------
Confidence            35679999999999999999999999999999999953         36899998763 11  12345788876      


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhC--CCEEEEeCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSN--PSIIFLDEPTT  197 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~--p~illlDEPts  197 (612)
                                                   .+.++.+||.. ..++++.+||||||||++||++|+.+  |++++|||||+
T Consensus        68 -----------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~  118 (176)
T cd03238          68 -----------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST  118 (176)
T ss_pred             -----------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence                                         24677888876 47889999999999999999999999  99999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|.+|+....
T Consensus       119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~  169 (176)
T cd03238         119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG  169 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence            99999999999999999878999999999986 44 68999999977654333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=2.3e-35  Score=337.38  Aligned_cols=194  Identities=21%  Similarity=0.316  Sum_probs=161.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.++         +++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.+++   
T Consensus       451 ~i~~~nv~~~~~---------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----~~G~i~~~~---  513 (659)
T TIGR00954       451 GIKFENIPLVTP---------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-----YGGRLTKPA---  513 (659)
T ss_pred             eEEEEeeEEECC---------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCCeEeecC---
Confidence            599999999762         235799999999999999999999999999999999999875     579998753   


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc---------CCCC
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT---------KHLS  170 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LS  170 (612)
                            ++.++||+|++.+++. |++||+.++......  ..+...+++++++++.+|+++..+++.         ++||
T Consensus       514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS  584 (659)
T TIGR00954       514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS  584 (659)
T ss_pred             ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence                  4579999999998886 999999875322100  000112346788999999987665533         6899


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||||||++|||||+.+|++++|||||+|||+.++..+.+.+++   .|+|+|+++|+++  ..+.+|++++|+.
T Consensus       585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~  653 (659)
T TIGR00954       585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence            9999999999999999999999999999999999999998876   3899999999986  3588999999963

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=5.6e-35  Score=333.56  Aligned_cols=205  Identities=24%  Similarity=0.307  Sum_probs=164.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+||++++|++++|+||||||||||||+|+|+.+|     ++|+|.++|.. 
T Consensus         3 ~l~i~~ls~~~----------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-----~~G~I~~~~~~-   66 (635)
T PRK11147          3 LISIHGAWLSF----------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-----DDGRIIYEQDL-   66 (635)
T ss_pred             EEEEeeEEEEe----------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----CCeEEEeCCCC-
Confidence            58999999988          557799999999999999999999999999999999999886     68999998732 


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHH------------------------------HHhc--cCCCCCHHHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVA------------------------------AHLK--LGNQYSRKAKES  147 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~------------------------------~~l~--~~~~~~~~~~~~  147 (612)
                              .++|++|++......+|.+++..+                              ..+.  .. .....+.+.
T Consensus        67 --------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~  137 (635)
T PRK11147         67 --------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLEN  137 (635)
T ss_pred             --------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHH
Confidence                    256677654333334555543211                              0000  00 000112345


Q ss_pred             HHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625        148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ  227 (612)
Q Consensus       148 ~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~  227 (612)
                      +++++++.+|+.  .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++.   .|||++|||
T Consensus       138 ~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd  212 (635)
T PRK11147        138 RINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHD  212 (635)
T ss_pred             HHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCC
Confidence            788999999997  388999999999999999999999999999999999999999999999998873   599999999


Q ss_pred             CchHHHhcccceeeecCCeEE-EecCccC
Q psy12625        228 PSASLLNMADYLYVLTEGYCT-YQGTVPG  255 (612)
Q Consensus       228 ~~~~i~~~~D~v~~L~~G~iv-~~G~~~~  255 (612)
                      +. .+.+.||++++|++|+++ +.|+.++
T Consensus       213 ~~-~l~~~~d~i~~L~~G~i~~~~g~~~~  240 (635)
T PRK11147        213 RS-FIRNMATRIVDLDRGKLVSYPGNYDQ  240 (635)
T ss_pred             HH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence            75 678899999999999997 5576653

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.7e-34  Score=272.53  Aligned_cols=154  Identities=36%  Similarity=0.627  Sum_probs=138.5

Q ss_pred             EEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc-
Q psy12625         23 FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-  101 (612)
Q Consensus        23 ~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~-  101 (612)
                      ++|+++.+          .++.+++++|+++++|++++|+||||||||||+++|+|.++|     .+|+|.++|.++.. 
T Consensus         2 ~~~~~~~~----------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-----~~G~i~~~~~~~~~~   66 (157)
T cd00267           2 IENLSFRY----------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----TSGEILIDGKDIAKL   66 (157)
T ss_pred             eEEEEEEe----------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEEcccC
Confidence            57888877          334799999999999999999999999999999999999875     58999999987643 


Q ss_pred             -hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        102 -HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       102 -~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                       ....++.++|++|                                                      |||||+||++||
T Consensus        67 ~~~~~~~~i~~~~q------------------------------------------------------lS~G~~~r~~l~   92 (157)
T cd00267          67 PLEELRRRIGYVPQ------------------------------------------------------LSGGQRQRVALA   92 (157)
T ss_pred             CHHHHHhceEEEee------------------------------------------------------CCHHHHHHHHHH
Confidence             2345678999998                                                      999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ++++.+|++++|||||+|||..++..+.+.+++++++++|+++++|++. .+...||+++++++|+
T Consensus        93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~  157 (157)
T cd00267          93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence            9999999999999999999999999999999999877899999999976 5677889999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.2e-34  Score=356.35  Aligned_cols=202  Identities=24%  Similarity=0.321  Sum_probs=166.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|+++.|+.       ..++++|+|+|+++++||.++|+||||||||||+++|.|..+|     .+|.+.      
T Consensus       614 ~I~~~~vsF~y~~-------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----~~G~i~------  675 (1495)
T PLN03232        614 AISIKNGYFSWDS-------KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----AETSSV------  675 (1495)
T ss_pred             cEEEEeeEEEcCC-------CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-----cCCCEE------
Confidence            6999999999842       1246799999999999999999999999999999999999986     455542      


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCcccC----C
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNTLTK----H  168 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~~----~  168 (612)
                          .+++.++||+|++.+++ .|++||+.|+..      .+    +++.+++++..+|.+.       .++.++    +
T Consensus       676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~  740 (1495)
T PLN03232        676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVN  740 (1495)
T ss_pred             ----EecCcEEEEcCcccccc-ccHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcc
Confidence                24678999999999997 699999998631      22    3456666666666432       234444    5


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      ||||||||++||||+.++|+|++||||||+||+.+++++++. ++.+ .+++|+|++||+++  ....+|+|++|++|++
T Consensus       741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i  817 (1495)
T PLN03232        741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMI  817 (1495)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEE
Confidence            999999999999999999999999999999999999999765 4443 36799999999985  4678999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      ++.|+.+++.
T Consensus       818 ~~~Gt~~eL~  827 (1495)
T PLN03232        818 KEEGTFAELS  827 (1495)
T ss_pred             EEecCHHHHH
Confidence            9999988765

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=9.2e-35  Score=327.13  Aligned_cols=183  Identities=29%  Similarity=0.367  Sum_probs=156.2

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE-----------ECCEeccchH-hh---cc
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE-----------INETRLQDHR-ML---RK  107 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~-----------~~g~~~~~~~-~~---~~  107 (612)
                      ..+|++++ .+++||+++|+||||||||||||+|+|+++|     .+|+|.           ++|+++.+.. ..   +.
T Consensus        87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-----~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~  160 (590)
T PRK13409         87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-----NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEI  160 (590)
T ss_pred             ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCc
Confidence            46999999 9999999999999999999999999999886     579997           8998864321 11   23


Q ss_pred             ceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh
Q psy12625        108 ESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL  184 (612)
Q Consensus       108 ~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~  184 (612)
                      .+++.+|.....|.   .||+|++...            +.+++++++++.+||.+..|+.+++|||||||||+||++|+
T Consensus       161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~  228 (590)
T PRK13409        161 KVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL  228 (590)
T ss_pred             ceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            45666665444333   3999988531            12457889999999999999999999999999999999999


Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      .+|++++|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus       229 ~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~  287 (590)
T PRK13409        229 RDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE  287 (590)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence            99999999999999999999999999999988 999999999986 678899999999864

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-35  Score=301.14  Aligned_cols=217  Identities=27%  Similarity=0.390  Sum_probs=179.4

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      .+..+.|.|+++.|.         +.+++|+++|+++++|+.+||+||||+||||++++|-.++++     .+|.|.+||
T Consensus       259 ~~g~v~F~~V~F~y~---------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-----~sG~I~id~  324 (497)
T COG5265         259 RLGAVAFINVSFAYD---------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-----NSGSITIDG  324 (497)
T ss_pred             ccceEEEEEEEeecc---------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-----cCceEEEcc
Confidence            345699999999984         468899999999999999999999999999999999999885     689999999


Q ss_pred             Eeccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCCccccCcccCC-
Q psy12625         97 TRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSISTCKNTLTKH-  168 (612)
Q Consensus        97 ~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~~~-  168 (612)
                      +++.+.  +.+|+.||.||||..||. -|...|+.++..     ..+.++..+     .+...++.  +.+-.++.+++ 
T Consensus       325 qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger  396 (497)
T COG5265         325 QDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER  396 (497)
T ss_pred             hhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh
Confidence            998654  568999999999999886 588888877531     223333222     22223332  34445666764 


Q ss_pred             ---CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        169 ---LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       169 ---LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                         |||||||||+|||+++.+|+||++||.||+||..+.+++...|++++ .|+|.+++.|..+.  .--+|.|++|++|
T Consensus       397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiivl~~g  473 (497)
T COG5265         397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIVLDNG  473 (497)
T ss_pred             eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEEeeCC
Confidence               99999999999999999999999999999999999999999999987 56777888899864  3468999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      +|++.|+.++++.
T Consensus       474 ~i~erg~h~~ll~  486 (497)
T COG5265         474 RIVERGTHEELLA  486 (497)
T ss_pred             EEEecCcHHHHHH
Confidence            9999999887764

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.2e-34  Score=354.51  Aligned_cols=201  Identities=23%  Similarity=0.334  Sum_probs=168.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce-eEEEECCEe
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS-GYIEINETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~-G~I~~~g~~   98 (612)
                      .|+++|+++.|+.       ..++++|+|+|+++++||.++|+||||||||||+++|.|.++|     .+ |+|.+    
T Consensus       614 ~I~~~nvsf~y~~-------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----~~GG~I~l----  677 (1622)
T PLN03130        614 AISIKNGYFSWDS-------KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-----RSDASVVI----  677 (1622)
T ss_pred             ceEEEeeEEEccC-------CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-----CCCceEEE----
Confidence            6999999999842       1246799999999999999999999999999999999999986     57 88864    


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------CcccC----
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLTK----  167 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~~----  167 (612)
                             ++.++||+|++.+++ .|++||+.|+..      .    .+++.+++++..+|.+..       ++.++    
T Consensus       678 -------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~  739 (1622)
T PLN03130        678 -------RGTVAYVPQVSWIFN-ATVRDNILFGSP------F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGV  739 (1622)
T ss_pred             -------cCeEEEEcCccccCC-CCHHHHHhCCCc------c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCC
Confidence                   456999999999987 699999998631      1    234566777777665432       44444    


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      +||||||||++||||+..+|+|++||||||+||+.+.+++.+ .++.+. +|+|+|++||+++  ....+|+|++|++|+
T Consensus       740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~  816 (1622)
T PLN03130        740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGM  816 (1622)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCE
Confidence            599999999999999999999999999999999999998875 455543 5799999999984  478899999999999


Q ss_pred             EEEecCccChh
Q psy12625        247 CTYQGTVPGLV  257 (612)
Q Consensus       247 iv~~G~~~~~~  257 (612)
                      +++.|+.+++.
T Consensus       817 i~e~Gt~~eL~  827 (1622)
T PLN03130        817 IKEEGTYEELS  827 (1622)
T ss_pred             EEEeCCHHHHH
Confidence            99999988764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-34  Score=263.43  Aligned_cols=216  Identities=26%  Similarity=0.380  Sum_probs=173.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-   98 (612)
                      .++++++|+.|          +...-.+||||.+.|||+++|+|+|||||||||++|++++.|     ..|+|.+.-.+ 
T Consensus         6 LL~V~~lsk~Y----------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-----~~G~v~Y~~r~~   70 (258)
T COG4107           6 LLSVSGLSKLY----------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-----DAGTVTYRMRDG   70 (258)
T ss_pred             ceeehhhhhhh----------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-----CCCeEEEEcCCC
Confidence            58889999887          666678999999999999999999999999999999999987     68999886432 


Q ss_pred             --c--c---ch---HhhccceEEEccCCCCCCCC------CHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625         99 --L--Q---DH---RMLRKESCYIMQDNLLQELL------TVEESLTV-AAHLKLGNQYSRKAKESKVDSIADSLSIST-  160 (612)
Q Consensus        99 --~--~---~~---~~~~~~i~yv~Q~~~l~~~l------Tv~e~l~~-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-  160 (612)
                        .  .   +.   .-.|..=|+|.|+|.-=-.+      .+.|-++- +++     +  -...++.+.++++++.++. 
T Consensus        71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----H--YG~iR~~a~~WL~~VEI~~~  143 (258)
T COG4107          71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----H--YGNIRAEAQDWLEEVEIDLD  143 (258)
T ss_pred             CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----h--hhhHHHHHHHHHHhcccCcc
Confidence              1  1   11   11345679999987422112      23333221 110     1  1235667889999999875 


Q ss_pred             ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccce
Q psy12625        161 CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYL  239 (612)
Q Consensus       161 ~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v  239 (612)
                      ..|..+...|||+|||+.|||.|++.|++.|+||||-|||...+..++++++.|.. -|.+++++|||.. .+.-++||.
T Consensus       144 RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rl  222 (258)
T COG4107         144 RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRL  222 (258)
T ss_pred             cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcc
Confidence            45888999999999999999999999999999999999999999999999999986 5999999999975 456689999


Q ss_pred             eeecCCeEEEecCccChhh
Q psy12625        240 YVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       240 ~~L~~G~iv~~G~~~~~~~  258 (612)
                      ++|++|++++.|-.+.+++
T Consensus       223 mvmk~g~vve~GLTDrvLD  241 (258)
T COG4107         223 MVMKQGQVVESGLTDRVLD  241 (258)
T ss_pred             eeecCCCEecccccccccc
Confidence            9999999999998877653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=8.9e-34  Score=349.25  Aligned_cols=205  Identities=20%  Similarity=0.286  Sum_probs=166.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .++++|+++.|+.        +++++|+|+|+++++||+++|+||||||||||+++|+|..+|     .+|+|.++|   
T Consensus       636 ~i~~~~~~~~~~~--------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---  699 (1522)
T TIGR00957       636 SITVHNATFTWAR--------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVHMKG---  699 (1522)
T ss_pred             cEEEEEeEEEcCC--------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-----CCcEEEECC---
Confidence            6999999998731        345799999999999999999999999999999999999886     689999987   


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHH--HHHHHc-----CCccccCcccCCCChh
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVD--SIADSL-----SISTCKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~l-----gL~~~~~~~~~~LSgG  172 (612)
                              .++||+|++.+++ .|++||+.++..      ..++..++.++  ++.+.+     |.+...+++..+||||
T Consensus       700 --------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGG  764 (1522)
T TIGR00957       700 --------SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGG  764 (1522)
T ss_pred             --------EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHH
Confidence                    3899999998875 799999987532      12211111111  111222     2223345566789999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      ||||++||||++.+|++++||||||+||+.++..+.+.+.+..  .+++|+|++||++..  ...+|+|++|++|+++..
T Consensus       765 QkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~  842 (1522)
T TIGR00957       765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEM  842 (1522)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEee
Confidence            9999999999999999999999999999999999999997642  357999999999863  456999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+.+++.
T Consensus       843 g~~~~l~  849 (1522)
T TIGR00957       843 GSYQELL  849 (1522)
T ss_pred             CCHHHHH
Confidence            9988765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.2e-33  Score=306.59  Aligned_cols=207  Identities=26%  Similarity=0.363  Sum_probs=172.7

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|+++.|          +.+++++|+|+++.+|+.++|+|+||||||||||+|+|...|     .+|+|...+. 
T Consensus         2 ~~i~~~~ls~~~----------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-----~~G~i~~~~~-   65 (530)
T COG0488           2 SMITLENLSLAY----------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----DSGEVTRPKG-   65 (530)
T ss_pred             ceEEEeeeEEee----------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-----CCCeEeecCC-
Confidence            368999999988          789999999999999999999999999999999999999876     6899976542 


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc-------------cCCC--------------CCHHHHHHHHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK-------------LGNQ--------------YSRKAKESKVDS  151 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~  151 (612)
                              .+++|++|++...+..||.+.+.-+..-.             ++..              ...-+.+.++..
T Consensus        66 --------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~  137 (530)
T COG0488          66 --------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE  137 (530)
T ss_pred             --------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHH
Confidence                    24999999999999999999876542100             0000              000112467888


Q ss_pred             HHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625        152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS  231 (612)
Q Consensus       152 ~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~  231 (612)
                      ++..+|+.+. ++++++||||||.||+||++|+.+|++|+|||||++||..+..-+.+.|++.  .| |+|++|||- ..
T Consensus       138 ~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR-~F  212 (530)
T COG0488         138 ALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR-YF  212 (530)
T ss_pred             HHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH-HH
Confidence            9999999888 9999999999999999999999999999999999999999999999999754  56 999999994 57


Q ss_pred             HHhcccceeeecCCeEE-EecCcc
Q psy12625        232 LLNMADYLYVLTEGYCT-YQGTVP  254 (612)
Q Consensus       232 i~~~~D~v~~L~~G~iv-~~G~~~  254 (612)
                      +-+.|++|+-++.|++. |.|.-+
T Consensus       213 Ld~V~t~I~~ld~g~l~~y~Gny~  236 (530)
T COG0488         213 LDNVATHILELDRGKLTPYKGNYS  236 (530)
T ss_pred             HHHHhhheEEecCCceeEecCCHH
Confidence            88999999999999765 555433

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.9e-33  Score=322.01  Aligned_cols=219  Identities=23%  Similarity=0.253  Sum_probs=164.6

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ....|+++|++++|          +++.+|+|+|++|++|+.++|+||||||||||||+|+|+...  +.+.+|+|.+.+
T Consensus       174 ~~~~I~i~nls~~y----------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~--g~p~~g~I~~~~  241 (718)
T PLN03073        174 AIKDIHMENFSISV----------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID--GIPKNCQILHVE  241 (718)
T ss_pred             CceeEEEceEEEEe----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCCCCEEEEEe
Confidence            34579999999998          456799999999999999999999999999999999997421  123578887654


Q ss_pred             Eecc----ch------------HhhccceEEEccCCCCCCCCCHHHHHHH------------------HHHhccCCCCCH
Q psy12625         97 TRLQ----DH------------RMLRKESCYIMQDNLLQELLTVEESLTV------------------AAHLKLGNQYSR  142 (612)
Q Consensus        97 ~~~~----~~------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~------------------~~~l~~~~~~~~  142 (612)
                      +++.    ..            ...++.+++++|++.+... ++.++...                  ...+..   ...
T Consensus       242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~  317 (718)
T PLN03073        242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDA  317 (718)
T ss_pred             ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCc
Confidence            4311    00            0123446777776543221 11111100                  000000   001


Q ss_pred             HHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy12625        143 KAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI  221 (612)
Q Consensus       143 ~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv  221 (612)
                      ...++++.++++.+|+. +..++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++   +.||
T Consensus       318 ~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tv  394 (718)
T PLN03073        318 YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTF  394 (718)
T ss_pred             chHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEE
Confidence            12456788899999996 5578899999999999999999999999999999999999999999999999886   6799


Q ss_pred             EEEecCCchHHHhcccceeeecCCeEE-EecCccC
Q psy12625        222 ICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVPG  255 (612)
Q Consensus       222 i~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~  255 (612)
                      |+++||.. .+.+.||++++|++|++. |.|+.++
T Consensus       395 iivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~  428 (718)
T PLN03073        395 IVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT  428 (718)
T ss_pred             EEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            99999975 678889999999999996 6776553

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=8.7e-33  Score=339.59  Aligned_cols=189  Identities=24%  Similarity=0.354  Sum_probs=154.9

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      +++|+|+|+++++||+++|+|||||||||||++|+|+.+|     .+|+|.++|           .++||+|++.+++ .
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-----~~G~i~~~g-----------~iayv~Q~~~l~~-~  501 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-----SEGKIKHSG-----------RISFSPQTSWIMP-G  501 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECC-----------EEEEEeCCCccCC-c
Confidence            5699999999999999999999999999999999999986     689999987           3899999999987 4


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHcCC--ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSLSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP  195 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL--~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP  195 (612)
                      ||+||+.|+...      .....++     ..++.++.+..  ....+.+..+||||||||++||||++.+|++++||||
T Consensus       502 Ti~eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep  575 (1490)
T TIGR01271       502 TIKDNIIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP  575 (1490)
T ss_pred             cHHHHHHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            999999986321      1111111     12233333321  2223455678999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        196 TTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       196 tsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||+||+.++.++.+. ++++. +|+|+|++||++..  ...||++++|++|+++..|+.+++.
T Consensus       576 ~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       576 FTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999985 66664 58999999999863  4569999999999999999988764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=3.7e-32  Score=271.86  Aligned_cols=193  Identities=21%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHH-HHHHCCCCCCCCCCceeEEEEC------------CEeccchHhhc-
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLL-DILAGYRRPKKTETNSGYIEIN------------ETRLQDHRMLR-  106 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~l~g~~~p~~~~~~~G~I~~~------------g~~~~~~~~~~-  106 (612)
                      .+.++|+|||+++++||+++|+||||||||||+ ..+..          .|++.+.            .-...+....+ 
T Consensus         6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (226)
T cd03270           6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----------EGQRRYVESLSAYARQFLGQMDKPDVDSIEG   75 (226)
T ss_pred             chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----------HHHHHHhhcccchhhhhhcccCccccccccC
Confidence            456799999999999999999999999999996 44431          1111100            00000101111 


Q ss_pred             cceEEEccCCC--CCCCCCHHH---HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHH
Q psy12625        107 KESCYIMQDNL--LQELLTVEE---SLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       107 ~~i~yv~Q~~~--l~~~lTv~e---~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia  180 (612)
                      ...++..|++.  ..+..+|..   ...+...+.     ......++ .+.++.+||.+ ..++++.+||||||||++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  149 (226)
T cd03270          76 LSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA  149 (226)
T ss_pred             CCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence            23444444432  234445442   222221111     11212233 56899999987 58999999999999999999


Q ss_pred             HHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEec
Q psy12625        181 LELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQG  251 (612)
Q Consensus       181 ~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G  251 (612)
                      ++|+.+|  ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+ +.||++++|      ++|+++++|
T Consensus       150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            9999998  599999999999999999999999999888999999999985 44 699999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.3e-32  Score=338.32  Aligned_cols=197  Identities=25%  Similarity=0.352  Sum_probs=159.0

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      +++.+|+|+|+++++||+++|+|||||||||||++|+|..+|     .+|+|.++           +.++|++|++.+++
T Consensus       671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-----~~G~i~~~-----------~~i~yv~Q~~~l~~  734 (1560)
T PTZ00243        671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-----SEGRVWAE-----------RSIAYVPQQAWIMN  734 (1560)
T ss_pred             CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEEC-----------CeEEEEeCCCccCC
Confidence            346799999999999999999999999999999999999886     57999753           46999999998875


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc--CCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg  198 (612)
                       .||+||+.++..... ....+..+...+++.++.+  |+....+++..+||||||||++|||||+.+|++++||||||+
T Consensus       735 -~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa  812 (1560)
T PTZ00243        735 -ATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA  812 (1560)
T ss_pred             -CcHHHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence             799999987421100 0000001112344556666  777777888899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||+.++..+++.+.....+|+|+|++||++..  ...+|+|++|++|++++.|+.++..
T Consensus       813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        813 LDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence            99999999987543222358999999999853  4789999999999999999988764

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1e-31  Score=246.04  Aligned_cols=214  Identities=22%  Similarity=0.304  Sum_probs=173.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|.++|+++++..-   ....-.-++++|+|++++.||++++=||||||||||||+|-|-+.|     ++|+|.+.-..
T Consensus         3 ~~l~v~~~~KtFtlH---~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-----d~G~I~v~H~g   74 (235)
T COG4778           3 TPLNVSNVSKTFTLH---QQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----DEGQILVRHEG   74 (235)
T ss_pred             ceeeeecchhheEee---ecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-----CCceEEEEeCc
Confidence            357889999887431   1111235799999999999999999999999999999999998875     78999885322


Q ss_pred             --c--c--ch----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-CcccC
Q psy12625         99 --L--Q--DH----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-NTLTK  167 (612)
Q Consensus        99 --~--~--~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~  167 (612)
                        +  .  ++    ...++.+|||.|.-...|..+..|.+.-...-   ...+.+..+.++.+++.++++.+.. +-.+.
T Consensus        75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa  151 (235)
T COG4778          75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLAPA  151 (235)
T ss_pred             chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc
Confidence              1  1  11    22357899999987777777666655444322   2566777888999999999997654 55678


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ..||||||||.|||.++.+-+||+|||||+.||..++..++++|++-+..|.++|=+-||-. .-...+||++-+..
T Consensus       152 TFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~  227 (235)
T COG4778         152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA  227 (235)
T ss_pred             ccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence            99999999999999999999999999999999999999999999998889999999999953 44668999998864

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=5.1e-31  Score=267.23  Aligned_cols=201  Identities=25%  Similarity=0.345  Sum_probs=158.2

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----CCC-----CCCCCCCcee------EEEECCEeccch---
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA-----GYR-----RPKKTETNSG------YIEINETRLQDH---  102 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-----g~~-----~p~~~~~~~G------~I~~~g~~~~~~---  102 (612)
                      ...-|+|||..|+.|++++|.|+||||||||++.+.     ...     .|.......|      -|.++..++...   
T Consensus         7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs   86 (261)
T cd03271           7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS   86 (261)
T ss_pred             chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence            345699999999999999999999999999998552     110     1111111122      367777665210   


Q ss_pred             ---------Hhhc----------------cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC
Q psy12625        103 ---------RMLR----------------KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS  157 (612)
Q Consensus       103 ---------~~~~----------------~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg  157 (612)
                               +..|                ..+.|..++......+||.|++.|...++         ..+++.++++.+|
T Consensus        87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg  157 (261)
T cd03271          87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG  157 (261)
T ss_pred             cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence                     1111                12556666666677899999999875432         1245678999999


Q ss_pred             Ccc-ccCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625        158 IST-CKNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL  233 (612)
Q Consensus       158 L~~-~~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~  233 (612)
                      |.+ ..++++.+||||||||++||++|+.+   |++++|||||+|||+..+..+.+.|++++++|.|||+++|++. . .
T Consensus       158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~-i  235 (261)
T cd03271         158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-V-I  235 (261)
T ss_pred             CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H-H
Confidence            987 57999999999999999999999996   7999999999999999999999999999988999999999985 3 4


Q ss_pred             hcccceeee------cCCeEEEecCc
Q psy12625        234 NMADYLYVL------TEGYCTYQGTV  253 (612)
Q Consensus       234 ~~~D~v~~L------~~G~iv~~G~~  253 (612)
                      +.+|+++.|      ++|+++++|++
T Consensus       236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         236 KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            679999999      79999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=1.1e-31  Score=246.87  Aligned_cols=131  Identities=39%  Similarity=0.607  Sum_probs=118.7

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      |+|+|+++++||+++|+||||||||||+++|+|..+|     .+|+|.++|+++..  ....++.++|++|++.+++.+|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-----~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t   75 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-----DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLT   75 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-----SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSB
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999875     68999999999765  2456889999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc----CCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----KHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                      |+||                ..+++++++++.+++.+..++.+    .+||||||||++||+||+.+|++++|||||+
T Consensus        76 v~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   76 VREN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            9999                23456889999999888777776    8999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0054|consensus

Probab=99.97  E-value=3.5e-31  Score=311.77  Aligned_cols=214  Identities=24%  Similarity=0.297  Sum_probs=181.6

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|++.+|        +.+...||||||++|+|||.++|+|..|||||||.++|-.+..|     .+|+|.+||.
T Consensus      1136 ~G~I~f~~~~~RY--------rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-----~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRY--------RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-----AEGEILIDGV 1202 (1381)
T ss_pred             CCeEEEEEeEEEe--------CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-----cCCeEEEcCe
Confidence            4689999999998        33567899999999999999999999999999999999999886     6899999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-------Cccc--
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-------NTLT--  166 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~--  166 (612)
                      ++.+.  ..+|++++.+||||.+|. -|||.||.-..      +.+    ++.+.+.|+..+|.+..       |..+  
T Consensus      1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf~------e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPFD------EYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred             ecccccHHHHHhcCeeeCCCCceec-CccccccCccc------ccC----HHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence            98653  789999999999999998 69999985321      222    34456666666654433       2222  


Q ss_pred             --CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        167 --KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       167 --~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                        .++|-||||.+++||||+++++||+|||+|++.|+.+-..|-+.||+-= +++|||.+.|..+. +.+ +|||+||++
T Consensus      1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDA 1348 (1381)
T ss_pred             CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeC
Confidence              4699999999999999999999999999999999999999999998743 57999999999874 544 799999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |+++++|+|.++.+
T Consensus      1349 G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLS 1362 (1381)
T ss_pred             CeEeecCChHHHHh
Confidence            99999999998764

>KOG0054|consensus

Probab=99.97  E-value=6.1e-31  Score=309.73  Aligned_cols=207  Identities=27%  Similarity=0.369  Sum_probs=175.8

Q ss_pred             CCceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625         16 RKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN   95 (612)
Q Consensus        16 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~   95 (612)
                      .....++++|.+++.+       +.+..+.|+|||+++++|+++||+||-|||||+||.+|.|-.+.     .+|+|.++
T Consensus       514 ~~~~~i~i~~~sfsW~-------~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-----~sG~v~v~  581 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWD-------SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-----LSGSVAVN  581 (1381)
T ss_pred             CCCceEEEeeeeEecC-------CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-----ccceEEEc
Confidence            3445699999998852       22345589999999999999999999999999999999998874     78999998


Q ss_pred             CEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc-------cC-
Q psy12625         96 ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL-------TK-  167 (612)
Q Consensus        96 g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------~~-  167 (612)
                      |.           ++||+|++.+++ -|||||+.|+..+          ++++.+++++...|++..+..       +| 
T Consensus       582 gs-----------iaYv~Q~pWI~n-gTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE  639 (1381)
T KOG0054|consen  582 GS-----------VAYVPQQPWIQN-GTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGE  639 (1381)
T ss_pred             Ce-----------EEEeccccHhhC-CcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecC
Confidence            85           899999999886 7999999987422          346777888888876544333       33 


Q ss_pred             ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                         +||||||||+++|||+-+|.+|.+||.|.|++|+....++.+..-.-.-+++|+|.+|||.  +....+|+|++|++
T Consensus       640 rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~  717 (1381)
T KOG0054|consen  640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD  717 (1381)
T ss_pred             CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC
Confidence               5999999999999999999999999999999999999999977664444689999999986  46889999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |+++..|+.+|+.+
T Consensus       718 G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  718 GKIVESGTYEELLK  731 (1381)
T ss_pred             CeEecccCHHHHHh
Confidence            99999999998873

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.1e-31  Score=246.87  Aligned_cols=210  Identities=27%  Similarity=0.417  Sum_probs=181.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+.++|++..-              =|-.+|+.+..||++-++|||||||||||-.++|+.+      .+|+|.++|.++
T Consensus         3 l~qln~v~~~t--------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------~sGsi~~~G~~l   62 (248)
T COG4138           3 LMQLNDVAEST--------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------GSGSIQFAGQPL   62 (248)
T ss_pred             eeeeccccccc--------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC------CCceEEECCcch
Confidence            46677776432              2678999999999999999999999999999999987      489999999997


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ...  .++.+.-+|..|+..-...+.|.+.+.+.        .+.++....++++.+.++|++...+.+.+|||||-|||
T Consensus        63 ~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRV  134 (248)
T COG4138          63 EAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV  134 (248)
T ss_pred             hHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceee
Confidence            532  45667778998887666668898887652        23455667789999999999999999999999999999


Q ss_pred             HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        178 SIALELLS-----NP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       178 ~ia~aL~~-----~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      -+|-..+.     ||  ++|++|||.++||...+..+-.+|.+++.+|.+||++.||.+. ..+.+|++.+|+.|++...
T Consensus       135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~  213 (248)
T COG4138         135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS  213 (248)
T ss_pred             EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence            99987653     44  7899999999999999999999999999999999999999985 6899999999999999999


Q ss_pred             cCccChhh
Q psy12625        251 GTVPGLVP  258 (612)
Q Consensus       251 G~~~~~~~  258 (612)
                      |..+++..
T Consensus       214 G~~~eVlt  221 (248)
T COG4138         214 GRREEVLT  221 (248)
T ss_pred             cchhhhcC
Confidence            99998753

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.4e-30  Score=274.96  Aligned_cols=218  Identities=24%  Similarity=0.360  Sum_probs=185.5

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|++..              ..++|+||++++||+++|.|-=|||+|-|+++|.|..++     .+|+|.+||+
T Consensus       261 ~~~l~v~~l~~~--------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-----~~G~i~l~G~  321 (500)
T COG1129         261 EPVLEVRNLSGG--------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-----SSGEILLDGK  321 (500)
T ss_pred             CcEEEEecCCCC--------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-----CCceEEECCE
Confidence            345777777532              157899999999999999999999999999999997653     5899999999


Q ss_pred             eccc--h-HhhccceEEEccC---CCCCCCCCHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHHcCCcc-ccCcccCC
Q psy12625         98 RLQD--H-RMLRKESCYIMQD---NLLQELLTVEESLTVAAHLKLGN--QYSRKAKESKVDSIADSLSIST-CKNTLTKH  168 (612)
Q Consensus        98 ~~~~--~-~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~  168 (612)
                      ++.-  + ...+..++|||.|   .-++..++|.+|+.++...+...  -.++...++.+++..+.+++.. ..+..+++
T Consensus       322 ~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~  401 (500)
T COG1129         322 PVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT  401 (500)
T ss_pred             EccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc
Confidence            8642  2 4577899999987   46888999999999883222211  2455556677899999999965 35789999


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||.||||.|||.|.++|++|||||||.|.|..++.+|.+++++++++|++||+++.+.. ++..+||||++|++|+++
T Consensus       402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~  480 (500)
T COG1129         402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIV  480 (500)
T ss_pred             CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999975 799999999999999999


Q ss_pred             EecCccC
Q psy12625        249 YQGTVPG  255 (612)
Q Consensus       249 ~~G~~~~  255 (612)
                      ..=+.++
T Consensus       481 ~e~~~~~  487 (500)
T COG1129         481 GELDREE  487 (500)
T ss_pred             EEecccc
Confidence            8655554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.97  E-value=1.2e-30  Score=255.45  Aligned_cols=169  Identities=22%  Similarity=0.302  Sum_probs=136.6

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC----CCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT----ETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~----~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      +++++++++| +++|+||||||||||+++|+|+.++...    ....|++.++|++... ...++.++||+|++..+   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~---   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGR---   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCc---
Confidence            6889999999 9999999999999999999999765311    1234678888876432 22357899999998776   


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTG  198 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsg  198 (612)
                             +.    .  .     .+++++++++.   .+..++.+.+||||||||++||++++    .+|+++++||||+|
T Consensus        89 -------~~----~--~-----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~  147 (197)
T cd03278          89 -------YS----I--I-----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA  147 (197)
T ss_pred             -------ee----E--E-----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence                   11    0  0     12456677776   56678899999999999999999997    46699999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||+.++..+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus       148 LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~  190 (197)
T cd03278         148 LDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM  190 (197)
T ss_pred             CCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence            999999999999999875 689999999975 3 578999999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=275.41  Aligned_cols=200  Identities=29%  Similarity=0.363  Sum_probs=166.7

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..++++|+++.|.         +++.+++++|+.+++|+.+||+||||+|||||||+|+|...|     .+|+|.+.-.
T Consensus       319 ~~vl~~~~~~~~y~---------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-----~~G~v~~g~~  384 (530)
T COG0488         319 KLVLEFENVSKGYD---------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-----LSGTVKVGET  384 (530)
T ss_pred             CeeEEEeccccccC---------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-----CCceEEeCCc
Confidence            55799999999872         237899999999999999999999999999999999998875     4898876432


Q ss_pred             eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhh
Q psy12625         98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKK  175 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerq  175 (612)
                               -.+||..|+. .+.+..|+.|++.-..    +     ...+..+...|..+++.. ...++++.||||||.
T Consensus       385 ---------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~  446 (530)
T COG0488         385 ---------VKIGYFDQHRDELDPDKTVLEELSEGF----P-----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA  446 (530)
T ss_pred             ---------eEEEEEEehhhhcCccCcHHHHHHhhC----c-----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHH
Confidence                     2489999986 4457779998875321    1     111567889999999975 458899999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe-cCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ-GTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~  254 (612)
                      |+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+.   .-|||+++||.. .+-+.+++++.+.+ ++..+ |..+
T Consensus       447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~  521 (530)
T COG0488         447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYE  521 (530)
T ss_pred             HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHH
Confidence            999999999999999999999999999999999999775   359999999965 78999999999998 54433 5443

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=7e-29  Score=250.89  Aligned_cols=194  Identities=19%  Similarity=0.301  Sum_probs=138.6

Q ss_pred             ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC----------------CCCCCCC-Ccee--EEEECCEe--
Q psy12625         40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY----------------RRPKKTE-TNSG--YIEINETR--   98 (612)
Q Consensus        40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~----------------~~p~~~~-~~~G--~I~~~g~~--   98 (612)
                      ++++.++++++     |++++|+||||||||||+++|+++                +.+..+. ..++  +|.+++.+  
T Consensus        12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~   86 (243)
T cd03272          12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNR   86 (243)
T ss_pred             cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCc
Confidence            35677888887     789999999999999999999843                2321110 0122  45555532  


Q ss_pred             --cc-chHhhccceEEEccCCCCCC-CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625         99 --LQ-DHRMLRKESCYIMQDNLLQE-LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus        99 --~~-~~~~~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                        +. +....++.+++++|+..+++ ..|..|...+............  ......++.+.+++.+..++++.+||||||
T Consensus        87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~  164 (243)
T cd03272          87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSGGQK  164 (243)
T ss_pred             cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCHHHH
Confidence              11 11235677999999887777 4677776666554432211000  000012333445666667889999999999


Q ss_pred             hHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        175 KRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       175 qRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ||++||++|+.    +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|++  ++.+.||++++|.
T Consensus       165 ~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~  234 (243)
T cd03272         165 SLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK  234 (243)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence            99999999974    5899999999999999999999999999865 78899998885  4679999999985

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=9.4e-27  Score=245.75  Aligned_cols=224  Identities=23%  Similarity=0.348  Sum_probs=192.3

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+..-.         ...+.+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++     .+|+|.++|+
T Consensus       255 ~~vL~V~~L~v~~~---------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~-----~~G~I~l~G~  320 (501)
T COG3845         255 EVVLEVEDLSVKDR---------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP-----ASGRILLNGK  320 (501)
T ss_pred             CeEEEEeeeEeecC---------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc-----CCceEEECCE
Confidence            56799999997631         235689999999999999999999999999999999999875     4599999999


Q ss_pred             ec-c--ch-HhhccceEEEccCC---CCCCCCCHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHHcCCcc-ccCcc
Q psy12625         98 RL-Q--DH-RMLRKESCYIMQDN---LLQELLTVEESLTVAAHLKL----GNQYSRKAKESKVDSIADSLSIST-CKNTL  165 (612)
Q Consensus        98 ~~-~--~~-~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~l~~----~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~  165 (612)
                      ++ .  +. ...+..++|||.|.   .+.+.+|+.||+.+...-+-    ..-......++.+.++++++++.. -.+.+
T Consensus       321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~  400 (501)
T COG3845         321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP  400 (501)
T ss_pred             eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc
Confidence            96 2  22 33456899999985   56788999999987654321    112455667788999999999974 35667


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +++||||++||+-+||+|..+|++|++.+||.|||..+...+.+.|.+++++|++|++++-|.+ +++.++|||.+|.+|
T Consensus       401 a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~G  479 (501)
T COG3845         401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEG  479 (501)
T ss_pred             hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCC
Confidence            8999999999999999999999999999999999999999999999999999999999999976 799999999999999


Q ss_pred             eEEEecCccCh
Q psy12625        246 YCTYQGTVPGL  256 (612)
Q Consensus       246 ~iv~~G~~~~~  256 (612)
                      +++...++++.
T Consensus       480 ri~~~~~~~~~  490 (501)
T COG3845         480 RIVGIVPPEEA  490 (501)
T ss_pred             ceecccccccC
Confidence            99999888764

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=2.2e-28  Score=248.66  Aligned_cols=179  Identities=19%  Similarity=0.303  Sum_probs=138.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE-eccch----HhhccceEEEccCC---------CCCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET-RLQDH----RMLRKESCYIMQDN---------LLQEL  121 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~-~~~~~----~~~~~~i~yv~Q~~---------~l~~~  121 (612)
                      ..+++|+||||||||||+++|++++.+.    ..|++...|. ++...    ...+..+++++|++         .+.+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~----~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~  100 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGIT----NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE  100 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhccc----ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence            4499999999999999999999998642    2467777665 32111    12245799999985         34567


Q ss_pred             CCHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHcCCc--------------------cccCcccCCCChhhhhHHHHH
Q psy12625        122 LTVEESLTVAAHLKLGNQY-SRKAKESKVDSIADSLSIS--------------------TCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~--------------------~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +||.+++......+.  .. .++...+++.++++.+|+.                    +..++++.+||||||||++||
T Consensus       101 ltV~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la  178 (251)
T cd03273         101 ITVTRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS  178 (251)
T ss_pred             EEEEEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence            888888765322111  01 1223457888999999986                    445688999999999999999


Q ss_pred             HHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        181 LELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       181 ~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ++|+    .+|+++++||||+|||+..+..+.+.|++++ +|.++|++||++  ++.+.||+++-+.
T Consensus       179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence            9998    5789999999999999999999999999985 488999999994  5688899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.95  E-value=7.4e-28  Score=238.74  Aligned_cols=181  Identities=19%  Similarity=0.134  Sum_probs=129.7

Q ss_pred             cceEEEEe-CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-EeccchHhhccceEEEccCCCCCCCCCH
Q psy12625         47 KDISGVFV-SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQELLTV  124 (612)
Q Consensus        47 ~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~~~~~~~~~~~~i~yv~Q~~~l~~~lTv  124 (612)
                      ++++|... +|++++|+|||||||||||++|++.+..    ...+....+. .+.......+..+++++|++....  ++
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g----~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~   91 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG----KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RV   91 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec----CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EE
Confidence            56666543 5899999999999999999999964321    1122222221 111111223567999999874321  11


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh----------CCCEEEEeC
Q psy12625        125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS----------NPSIIFLDE  194 (612)
Q Consensus       125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----------~p~illlDE  194 (612)
                      ....          ..+.++..+.+  .++..++.+..++++.+||||||||++||++|+.          +|+++++||
T Consensus        92 ~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE  159 (213)
T cd03279          92 ERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE  159 (213)
T ss_pred             EEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC
Confidence            1110          22222211111  2455557777899999999999999999999985          578999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ||+|||+.++..+.+.|+++++++.|||++||++. .+...+|+++++++|.
T Consensus       160 p~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         160 GFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence            99999999999999999999877999999999986 5778899999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=8.1e-29  Score=245.09  Aligned_cols=179  Identities=17%  Similarity=0.221  Sum_probs=137.0

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      +++.+++++++     ++++|+||||||||||+++|.-.               +|.+..  ...++++++++|+...++
T Consensus        15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~---------------~G~~~~--~~~~~~i~~~~~~~~~~~   72 (212)
T cd03274          15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV---------------FGFRAS--KMRQKKLSDLIHNSAGHP   72 (212)
T ss_pred             CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH---------------hccCHH--HhhhhhHHHHhcCCCCCC
Confidence            66779999987     89999999999999999999722               222211  111256899999988888


Q ss_pred             CCCHHHHHHHHHHhccC-----CCCCHHHHHH--HHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhh----CCCE
Q psy12625        121 LLTVEESLTVAAHLKLG-----NQYSRKAKES--KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS----NPSI  189 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~p~i  189 (612)
                      .+|++|++.+.......     .....+....  ..+++++.++|.+..+++++.||+|||||++||++++.    +|++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i  152 (212)
T cd03274          73 NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL  152 (212)
T ss_pred             CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence            89998887654332100     0111111111  12567788889888899999999999999999999974    4799


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +++||||+|||+.++..+.+.++++++ +.++|+++|++  ++.+.||++++|..
T Consensus       153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence            999999999999999999999999864 56778888985  57899999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.94  E-value=2.2e-26  Score=277.91  Aligned_cols=137  Identities=27%  Similarity=0.370  Sum_probs=114.8

Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHh---hCCCEEEEe
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELL---SNPSIIFLD  193 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~---~~p~illlD  193 (612)
                      .+...||.|++.+...-........++..+++ ++++.+||.+. .++.+.+||||||||++||++|+   .+|++++||
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD  837 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD  837 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence            45568999999886542211111233445566 58899999986 79999999999999999999998   699999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec------CCeEEEecCccChh
Q psy12625        194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT------EGYCTYQGTVPGLV  257 (612)
Q Consensus       194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~  257 (612)
                      |||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|.      +|+++..|+++++.
T Consensus       838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence            999999999999999999999988999999999986 45 8999999996      78999999998764

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.94  E-value=3.7e-27  Score=232.00  Aligned_cols=166  Identities=26%  Similarity=0.346  Sum_probs=126.4

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC-----CC
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILA----GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN-----LL  118 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~----g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~-----~l  118 (612)
                      ..++++.+| +++|+|||||||||||++|.    |..+|     ..|.+..+... ......+..+++++|++     ..
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~-----~~~~~~~~~~~-i~~~~~~~~v~~~f~~~~~~~~~v   87 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP-----NSKGGAHDPKL-IREGEVRAQVKLAFENANGKKYTI   87 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc-----ccccccchHHH-HhCCCCcEEEEEEEEeCCCCEEEE
Confidence            344667788 99999999999999999995    87664     23444411111 11123456799999987     33


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH------HHHHHHHhhCCCEEEE
Q psy12625        119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR------LSIALELLSNPSIIFL  192 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR------v~ia~aL~~~p~illl  192 (612)
                      ...+|+.|++.+.         ++    ..+++.+         ++.+++||+|||||      ++||++++.+|+++++
T Consensus        88 ~r~~~~~~~~~~~---------~~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl  145 (204)
T cd03240          88 TRSLAILENVIFC---------HQ----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL  145 (204)
T ss_pred             EEEhhHhhceeee---------ch----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence            4445777777542         11    1222232         77889999999996      7899999999999999


Q ss_pred             eCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecC
Q psy12625        193 DEPTTGLDYLNAT-NLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       193 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||||++||+.++. .+.+.|++++++ |.+||+++|++.  ....||+++.|.+
T Consensus       146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~  197 (204)
T cd03240         146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK  197 (204)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence            9999999999999 999999999876 889999999975  3578999999964

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.3e-27  Score=239.78  Aligned_cols=203  Identities=24%  Similarity=0.279  Sum_probs=167.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      -.|+++|+.|.|+.        . .-=+..||+++++||++-|+|.||||||||++.|.|+.+|     .+|+|.+||++
T Consensus       321 ~~lelrnvrfay~~--------~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-----qsG~I~ldg~p  386 (546)
T COG4615         321 KTLELRNVRFAYQD--------N-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILLDGKP  386 (546)
T ss_pred             cceeeeeeeeccCc--------c-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-----CCCceeECCcc
Confidence            36999999998843        1 1347899999999999999999999999999999999997     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc---Cccc--CCCCh
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK---NTLT--KHLSG  171 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~~--~~LSg  171 (612)
                      +..  .+++|+.++-|+-|..+|+.+-            .++.   +...+.++.+++++.|.+..   |...  -.||-
T Consensus       387 V~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt  451 (546)
T COG4615         387 VSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST  451 (546)
T ss_pred             CCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCcc---CCChHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence            854  3678998888888887776321            1111   12345678888888887643   3322  25999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      |||||+++-.||+-+-+|+++||=-+.-||.-++.+.+.+--+ +++|+||+.+|||.  ..+..+||++.+++|++++.
T Consensus       452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeec
Confidence            9999999999999999999999999999999999999877654 56899999999995  46899999999999999886


Q ss_pred             cC
Q psy12625        251 GT  252 (612)
Q Consensus       251 G~  252 (612)
                      -+
T Consensus       530 tg  531 (546)
T COG4615         530 TG  531 (546)
T ss_pred             cc
Confidence            53

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.94  E-value=1e-25  Score=262.24  Aligned_cols=125  Identities=25%  Similarity=0.396  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhCC---CEEEEeCCCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNP---SIIFLDEPTT  197 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~p---~illlDEPts  197 (612)
                      +||.|++.|...++   .      ..+..+.++.+||.+ ..++++.+||||||||+.||++|+.+|   ++++|||||+
T Consensus       792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts  862 (943)
T PRK00349        792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT  862 (943)
T ss_pred             CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            78889888865432   1      123467899999987 579999999999999999999999999   9999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      |||+..+..+++.|++++++|.|||+++|++. .+ ..+|+++.|      ++|++++.|+++++.
T Consensus       863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence            99999999999999999888999999999985 34 689999999      689999999988764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.93  E-value=1.5e-25  Score=245.68  Aligned_cols=193  Identities=26%  Similarity=0.398  Sum_probs=157.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|++..-+         +.+..|++.|+.+++||-+.|.||||||||||+|+|+|+-+.     -+|+|..-. 
T Consensus       390 ~~~i~~~nl~l~~p---------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-----g~G~I~~P~-  454 (604)
T COG4178         390 DHGITLENLSLRTP---------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-----GSGRISMPA-  454 (604)
T ss_pred             cceeEEeeeeEECC---------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-----CCCceecCC-
Confidence            46799999998753         345899999999999999999999999999999999999984     357765431 


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC------CCCh
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK------HLSG  171 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LSg  171 (612)
                              ...+-|+||.|.+... |.+|.+.++....   ..    .++.+.++|.++||.+..++.-.      .||+
T Consensus       455 --------~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~  518 (604)
T COG4178         455 --------DSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSG  518 (604)
T ss_pred             --------CCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcCh
Confidence                    2347899999987664 9999987753211   12    34568899999999887655432      4999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      |||||+++||.|+++|++++|||.||+||+.+...+.+.+++-. .+.|||.+.|.+.  +..+.++.+-+.+
T Consensus       519 GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~~  588 (604)
T COG4178         519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELLD  588 (604)
T ss_pred             hHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeecc
Confidence            99999999999999999999999999999999999999998733 4789999999975  4667777666543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.93  E-value=1e-24  Score=253.47  Aligned_cols=124  Identities=27%  Similarity=0.400  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhh---CCCEEEEeCCCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLS---NPSIIFLDEPTT  197 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~---~p~illlDEPts  197 (612)
                      +||.|.+.|...+.   .      ..+..++++.+||.. ..++++.+||||||||+.||++|+.   +|++++|||||+
T Consensus       790 ~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPts  860 (924)
T TIGR00630       790 MTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTT  860 (924)
T ss_pred             CcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCC
Confidence            67777777754432   1      123467899999986 4789999999999999999999997   599999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccCh
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGL  256 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~  256 (612)
                      |||+..+..+.+.|+++.++|.|||+++|++. .+ +.+|+++.|      ++|++++.|+++++
T Consensus       861 gLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       861 GLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999999999999999888999999999985 34 679999999      78999999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927|consensus

Probab=99.92  E-value=3.6e-25  Score=234.67  Aligned_cols=221  Identities=21%  Similarity=0.308  Sum_probs=152.4

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ..-.+.+.|+++.+          .++.+++|+++++.+|+-++|+|||||||||+|++|+|...|.   +..=.++.-.
T Consensus        72 ~s~dvk~~sls~s~----------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d~y~ls  138 (614)
T KOG0927|consen   72 ISRDVKIESLSLSF----------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHIDFYLLS  138 (614)
T ss_pred             ccccceeeeeeecc----------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccchhhhc
Confidence            34468899999887          5688999999999999999999999999999999999998873   2222333333


Q ss_pred             Eeccc--hHhhcc----------ceEEEccCCCCC-CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-cccc
Q psy12625         97 TRLQD--HRMLRK----------ESCYIMQDNLLQ-ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCK  162 (612)
Q Consensus        97 ~~~~~--~~~~~~----------~i~yv~Q~~~l~-~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~  162 (612)
                      +++..  ......          ++.|...+-... +.- -.+.+.- ...+. .....+..+.++-+++..+|. .+..
T Consensus       139 ~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~-~~~~l~~-~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~  215 (614)
T KOG0927|consen  139 REIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDK-EKDELDE-LYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ  215 (614)
T ss_pred             ccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccch-hhhHHHH-HHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence            33211  111111          111100000000 000 0000000 00000 012223345566677777775 5678


Q ss_pred             CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      ++.+.++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+  .++++++|..+ .+-..|.+|+-|
T Consensus       216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l  292 (614)
T KOG0927|consen  216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHL  292 (614)
T ss_pred             HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhhee
Confidence            999999999999999999999999999999999999999999999998876532  27888889854 788999999999


Q ss_pred             cCCe-EEEecCccCh
Q psy12625        243 TEGY-CTYQGTVPGL  256 (612)
Q Consensus       243 ~~G~-iv~~G~~~~~  256 (612)
                      .+++ +.|.|+.+..
T Consensus       293 ~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  293 DNKKLIYYEGNYDQY  307 (614)
T ss_pred             cccceeeecCCHHHH
Confidence            9998 6677776643

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.92  E-value=8e-25  Score=214.38  Aligned_cols=171  Identities=21%  Similarity=0.208  Sum_probs=125.6

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---hHhhccceEEEccCCCCCCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~---~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ++++++++.+| +.+|+|||||||||||.+|........     . ....|..+.+   ...-...+.+++|+....+  
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~-----~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--   82 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA-----S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--   82 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc-----c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence            46778888887 889999999999999999975432110     0 0011211111   0111345778888766554  


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH----hhCCCEEEEeCCCCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTG  198 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL----~~~p~illlDEPtsg  198 (612)
                          |           ... ...+++++++++.   .+..++++++||+|||||++||+++    +.+|++++|||||+|
T Consensus        83 ----~-----------~~~-~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g  143 (198)
T cd03276          83 ----N-----------PLC-VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF  143 (198)
T ss_pred             ----C-----------cCC-HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence                1           011 1124567777777   6778999999999999999999999    589999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC---CCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        199 LDYLNATNLVKLLRDMAHQ---GTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~~---g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ||..++..+.+.|++++++   ++||++++|++. ++.+ +|+|.+|..++
T Consensus       144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~  192 (198)
T cd03276         144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD  192 (198)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence            9999999999999998653   368999999986 4555 49999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=1e-24  Score=206.15  Aligned_cols=230  Identities=19%  Similarity=0.257  Sum_probs=174.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      +.++|++..+.+      +.+..++++++|++++.||+-+++|.||||||-..|+|+|..+.. -..+.-+..+++.++.
T Consensus         4 LDIrnL~IE~~T------sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL   76 (330)
T COG4170           4 LDIRNLTIEFKT------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLL   76 (330)
T ss_pred             ccccceEEEEec------CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhh
Confidence            567888888865      346678999999999999999999999999999999999987621 0012233445555442


Q ss_pred             c--hHhh----ccceEEEccCCC--CCCCCCHHHHHHHHH--HhccCCCCC-HHHHHHHHHHHHHHcCCcccc---Cccc
Q psy12625        101 D--HRML----RKESCYIMQDNL--LQELLTVEESLTVAA--HLKLGNQYS-RKAKESKVDSIADSLSISTCK---NTLT  166 (612)
Q Consensus       101 ~--~~~~----~~~i~yv~Q~~~--l~~~lTv~e~l~~~~--~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~---~~~~  166 (612)
                      .  +++.    -+.+++++|++.  +-|.-+|...+.-..  ....++-.. -.-+++++-+++.++|+.+..   ..++
T Consensus        77 ~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP  156 (330)
T COG4170          77 RLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP  156 (330)
T ss_pred             cCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence            1  1222    356889999984  334333333221110  000000000 012456788999999998765   4578


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      .+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|+||+.++||.. .+.+.||++-||.-|
T Consensus       157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCG  235 (330)
T COG4170         157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCG  235 (330)
T ss_pred             chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEec
Confidence            89999999999999999999999999999999999999999999999987 7999999999986 689999999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      +-++.++.+++++
T Consensus       236 Q~~ESa~~e~l~~  248 (330)
T COG4170         236 QTVESAPSEELVT  248 (330)
T ss_pred             ccccccchhHHhc
Confidence            9999999888764

>KOG0927|consensus

Probab=99.91  E-value=6.1e-25  Score=233.00  Aligned_cols=202  Identities=19%  Similarity=0.309  Sum_probs=157.7

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ++..+.++|+++.|..         +-.++++++|-+..++.+|++||||+|||||||++.|.+.|     ..|.|.-.-
T Consensus       386 p~pvi~~~nv~F~y~~---------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-----~~G~vs~~~  451 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSD---------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-----TIGMVSRHS  451 (614)
T ss_pred             CCCeEEEeccccCCCC---------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-----ccccccccc
Confidence            3456889999998732         22799999999999999999999999999999999999987     467775433


Q ss_pred             EeccchHhhccceEEEccC--CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhh
Q psy12625         97 TRLQDHRMLRKESCYIMQD--NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQ  173 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe  173 (612)
                      +.         .+++..|+  +.+.-..++-|++.=.        +++....+.+..++.++||+ +..+.++++||+||
T Consensus       452 H~---------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gq  514 (614)
T KOG0927|consen  452 HN---------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQ  514 (614)
T ss_pred             cc---------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccchhhccccc
Confidence            22         12333333  2233345666665321        12223456788999999999 55677889999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE-EEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC-TYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~  252 (612)
                      |+||..|+.++..|.+|+|||||+|||..+...+.+.|.+.   ..+||.++||.. .|.++++++.+..+|.+ .+.|+
T Consensus       515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~  590 (614)
T KOG0927|consen  515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD  590 (614)
T ss_pred             chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence            99999999999999999999999999999999999988765   247899999986 68999999999998755 45554


Q ss_pred             c
Q psy12625        253 V  253 (612)
Q Consensus       253 ~  253 (612)
                      .
T Consensus       591 i  591 (614)
T KOG0927|consen  591 I  591 (614)
T ss_pred             H
Confidence            3

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=6.9e-24  Score=220.63  Aligned_cols=189  Identities=25%  Similarity=0.304  Sum_probs=149.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++|.++++++          ++ --|+-=.+++..||+++++||||-||||+.++|||.++|     ++|+    .. 
T Consensus       341 ~lv~y~~~~k~~----------g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-----deg~----~~-  399 (591)
T COG1245         341 TLVEYPDLKKTY----------GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-----DEGS----EE-  399 (591)
T ss_pred             eeeecchheeec----------Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-----CCCC----Cc-
Confidence            345666666655          22 234555677888999999999999999999999999997     4555    11 


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                             .-.++|=||--.--...||++.+.-...-+...       .-...++++-|.|+...++.+.+|||||.|||+
T Consensus       400 -------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRva  465 (591)
T COG1245         400 -------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDELSGGELQRVA  465 (591)
T ss_pred             -------cceEeecceeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhcccccCCchhHHHHH
Confidence                   124788888644445689999876544322211       123467889999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ||.+|..++++.+||||++.||+..+..+.+.|++... .++|.+++-||.. .+--++||+++..
T Consensus       466 Iaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~  530 (591)
T COG1245         466 IAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence            99999999999999999999999999999999999987 6889999999975 4556778887654

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=2.7e-24  Score=218.06  Aligned_cols=177  Identities=19%  Similarity=0.249  Sum_probs=118.8

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-c------cc--hHhhccceEEEccCCCC-CCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-L------QD--HRMLRKESCYIMQDNLL-QELLT  123 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-~------~~--~~~~~~~i~yv~Q~~~l-~~~lT  123 (612)
                      .++ +++|+|||||||||||++|++...+     ..|++..++.+ +      ..  .....-.+.|..|++.. .-..+
T Consensus        21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~-----~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~   94 (247)
T cd03275          21 FDR-FTCIIGPNGSGKSNLMDAISFVLGE-----KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI   94 (247)
T ss_pred             CCC-eEEEECCCCCCHHHHHHHHHHHhCC-----CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence            344 9999999999999999999998764     23444333211 0      00  00112223444443221 00011


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc----------------------cCcccCCCChhhhhHHHHHH
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC----------------------KNTLTKHLSGGQKKRLSIAL  181 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----------------------~~~~~~~LSgGerqRv~ia~  181 (612)
                      +.+..   ...+...   +...++.++++++.+|+...                      .++++.+||||||||++||+
T Consensus        95 ~~~~~---~~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~  168 (247)
T cd03275          95 ITGGS---SSYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL  168 (247)
T ss_pred             EECCc---eEEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence            11110   0011111   11223456788888888522                      23345789999999999999


Q ss_pred             HHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        182 ELLSN----PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       182 aL~~~----p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +++.+    |+++++||||+|||+..+..+.+.|++++++|.+||+++|++  ++.+.+|++++|..
T Consensus       169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~  233 (247)
T cd03275         169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR  233 (247)
T ss_pred             HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence            99875    899999999999999999999999999987799999999995  45789999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.88  E-value=5.2e-24  Score=208.51  Aligned_cols=208  Identities=25%  Similarity=0.437  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy12625        338 SQFCILLKRTLIKCFRDRFLT-KVRLSLHLIIGSFLGIMYRGIGDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEF  416 (612)
Q Consensus       338 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er  416 (612)
                      +|++.+++|+++..+|||... ...++..++.++++|.+|.+++++.++. ++.|++++.+...++....+....+..|+
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999988444444 77888888888888777666667788899


Q ss_pred             hHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CC
Q psy12625        417 EITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LD  495 (612)
Q Consensus       417 ~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~  495 (612)
                      ..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+  +|+.+++.+++..+++.++|.+++++ ++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999887  77888888999999999999999998 78


Q ss_pred             hhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHh
Q psy12625        496 VKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVY  548 (612)
Q Consensus       496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f  548 (612)
                      .+.+..+.+++..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            88999999999999999999999999999999999999999999999998875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>KOG0060|consensus

Probab=99.88  E-value=3.7e-22  Score=213.37  Aligned_cols=200  Identities=22%  Similarity=0.291  Sum_probs=157.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|++++|+..-+.        .+..+++|+|+.|+.|+-+.|.||||||||+|||+|+|+-+-     .+|.+..-.+
T Consensus       431 Dn~i~~e~v~l~tPt--------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-----~~G~l~k~~~  497 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPT--------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-----TGGKLTKPTD  497 (659)
T ss_pred             cceEEeeeeeecCCC--------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-----CCCeEEeccc
Confidence            357999999987532        356688999999999999999999999999999999999873     5788865432


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc-----------
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT-----------  166 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------  166 (612)
                      .      -.+.+-|+||.|..-- -|.||.+.|+..--.  ...+...++++.+.|+.++|.|..++.-           
T Consensus       498 ~------~~~~lfflPQrPYmt~-GTLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~  568 (659)
T KOG0060|consen  498 G------GPKDLFFLPQRPYMTL-GTLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM  568 (659)
T ss_pred             C------CCCceEEecCCCCccc-cchhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH
Confidence            2      1155899999997544 499999888632111  1112234567888888888877654432           


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ..||+||+||++.||-+.++|++-+|||-||++|......+.+.+++   .|.|.|-+.|..+  +.+.=|.++-|+.
T Consensus       569 dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g  641 (659)
T KOG0060|consen  569 DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG  641 (659)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence            24999999999999999999999999999999999999988887765   5899999999975  4556688888865

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.87  E-value=3.5e-22  Score=196.18  Aligned_cols=146  Identities=19%  Similarity=0.226  Sum_probs=112.7

Q ss_pred             ccceEEEEeCC-eEEEEECCCCCcHHHHHHHHH--------CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC
Q psy12625         46 LKDISGVFVSK-ELSVILGPSGSGKTKLLDILA--------GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN  116 (612)
Q Consensus        46 L~~vs~~i~~G-e~~aI~GpsGsGKSTLL~~l~--------g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~  116 (612)
                      +.++|+++.+| ++++|.||||||||||||+|+        |..-|     ..           .    ...++|+.|..
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp-----~~-----------~----~~~~~~~~~~~   76 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP-----AA-----------E----GSSLPVFENIF   76 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc-----cc-----------c----cccCcCccEEE
Confidence            45899999999 489999999999999999998        43221     00           0    01133333321


Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625        117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT  196 (612)
Q Consensus       117 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt  196 (612)
                                                           ..++..+..+...+.+|+||||++.|+++ +.+|+++++||||
T Consensus        77 -------------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~  118 (200)
T cd03280          77 -------------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELG  118 (200)
T ss_pred             -------------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence                                                 11222223445557899999999999988 4899999999999


Q ss_pred             CCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        197 TGLDYLNATNLV-KLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       197 sgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      +|||+..+..+. ..++++.+.|.++|++||+.  ++.+++|++..|++|++.+.+
T Consensus       119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         119 SGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence            999999999996 47888877789999999984  578999999999999998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0062|consensus

Probab=99.87  E-value=4.6e-22  Score=210.19  Aligned_cols=202  Identities=21%  Similarity=0.244  Sum_probs=142.7

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|...|.+..|          +.|.+|++-++++..|.-++++|+||+|||||||+|+.           |.|..-..
T Consensus        78 ~~Di~~~~fdLa~----------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v~~f~v  136 (582)
T KOG0062|consen   78 SKDIHIDNFDLAY----------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQVSGFHV  136 (582)
T ss_pred             ccceeeeeeeeee----------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCcCccCc
Confidence            4467777777776          78999999999999999999999999999999999986           12211111


Q ss_pred             eccchHhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhh
Q psy12625         98 RLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKK  175 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerq  175 (612)
                      +    .+.+  -.+++-. +.+....++.+-+.--..+.  ...   ..++...++|..+|.++. ..+++++||||=|-
T Consensus       137 e----qE~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrM  205 (582)
T KOG0062|consen  137 E----QEVR--GDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRM  205 (582)
T ss_pred             h----hhee--ccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhh
Confidence            1    1111  1122211 11222222222221111111  000   233444558999999764 57788999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE-EEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC-TYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~  254 (612)
                      |+++||||..+|+||+|||||+.||..+..-+.+.|+.+   +.|+|+++||- ..+-..|..|+-+++-++ .|.|..+
T Consensus       206 rlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr-~FLn~V~tdIIH~~~~kL~~YkGN~~  281 (582)
T KOG0062|consen  206 RLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR-NFLNTVCTDIIHLENLKLDYYKGNYS  281 (582)
T ss_pred             HHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH-HHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence            999999999999999999999999999999999998775   37999999995 467888999998887655 3556544


Q ss_pred             C
Q psy12625        255 G  255 (612)
Q Consensus       255 ~  255 (612)
                      +
T Consensus       282 ~  282 (582)
T KOG0062|consen  282 Q  282 (582)
T ss_pred             H
Confidence            3

>KOG2355|consensus

Probab=99.86  E-value=4.3e-21  Score=181.30  Aligned_cols=213  Identities=21%  Similarity=0.292  Sum_probs=161.5

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++++.|+|+.         ..+++-|+|++++.|.-..++|.||||||||||+|+|-.-     ...|.|.++|+
T Consensus        11 ~~aievsgl~f~y~~---------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~Vlgr   76 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKV---------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGR   76 (291)
T ss_pred             cceEEEeccEEeccc---------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCc
Confidence            347999999999853         3489999999999999999999999999999999999643     12488999997


Q ss_pred             eccc-h------------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625         98 RLQD-H------------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT  164 (612)
Q Consensus        98 ~~~~-~------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  164 (612)
                      +.-. .            .++.+.++.-- +--+...+++.+.+ |+..     . .+.   ++-+.+++.++++-  .-
T Consensus        77 saFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g-~dp---~Rre~LI~iLDIdl--~W  143 (291)
T KOG2355|consen   77 SAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----G-DDP---ERREKLIDILDIDL--RW  143 (291)
T ss_pred             CccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----C-CCh---hHhhhhhhheeccc--eE
Confidence            6421 0            12333333332 22234456665543 3221     1 111   34456677776652  23


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +...+|-|||+||.|++.|+..=++|+|||-|-.||..++..+++.+++-++ .|.||+..||-.+ -+.....+++-|+
T Consensus       144 RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~  222 (291)
T KOG2355|consen  144 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIK  222 (291)
T ss_pred             EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEec
Confidence            4567999999999999999999999999999999999999999999999887 6999999999876 4678899999999


Q ss_pred             CCeEEEecCccChhh
Q psy12625        244 EGYCTYQGTVPGLVP  258 (612)
Q Consensus       244 ~G~iv~~G~~~~~~~  258 (612)
                      +|+++..-+.+++.+
T Consensus       223 ~Gkl~~~l~~~~i~e  237 (291)
T KOG2355|consen  223 SGKLVDNLKYQKIKE  237 (291)
T ss_pred             CCeeeeccccchhhh
Confidence            999988666555543

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=2.3e-21  Score=191.95  Aligned_cols=172  Identities=20%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC--------------CCceeEEE--ECCEeccchHhhccce
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT--------------ETNSGYIE--INETRLQDHRMLRKES  109 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~--------------~~~~G~I~--~~g~~~~~~~~~~~~i  109 (612)
                      ++++.+.+.+| +.+|+|||||||||||++|.-..-....              +..++.|.  +++.+  ..-.++...
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~--~~~~~~n~~   90 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNP--GNIQVDNLC   90 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCC--CccccCCce
Confidence            35666677666 8899999999999999998765421000              00111111  11100  001122223


Q ss_pred             EEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhhHHHHHHHH----
Q psy12625        110 CYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKKRLSIALEL----  183 (612)
Q Consensus       110 ~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~aL----  183 (612)
                      .+++|+.. .+..+++.|.+                         ..++ -.+..+..+++||||||||+.+++++    
T Consensus        91 ~~~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~  145 (213)
T cd03277          91 QFLPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQE  145 (213)
T ss_pred             EEEchHHHHHHHhCChHhHh-------------------------eeeecCCCccccchhhccccHHHHHHHHHHHHHHh
Confidence            34444431 11222222221                         1221 12334567789999999999877554    


Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhccc--ceeeecCCe
Q psy12625        184 LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G-TMIICTLHQPSASLLNMAD--YLYVLTEGY  246 (612)
Q Consensus       184 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~~~H~~~~~i~~~~D--~v~~L~~G~  246 (612)
                      +.+|+++++||||+|||+.++..+++.|++++++ | .++|++||+... ..+.+|  +|++|++|+
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence            5899999999999999999999999999999875 5 579999998753 566776  788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0066|consensus

Probab=99.84  E-value=6.4e-21  Score=196.84  Aligned_cols=177  Identities=25%  Similarity=0.332  Sum_probs=139.6

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      .+..|-++||+|.|+         +.++++++++|-|.-...+||+||||.||||||++|.|-+.|     ..|+..-  
T Consensus       583 ~PPvLGlH~VtFgy~---------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----~~GE~RK--  646 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYP---------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----NDGELRK--  646 (807)
T ss_pred             CCCeeecccccccCC---------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-----Ccchhhc--
Confidence            345688899999874         568899999999999999999999999999999999999887     3455432  


Q ss_pred             EeccchHhhccceEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc-ccCCCChhh
Q psy12625         97 TRLQDHRMLRKESCYIMQDNL--LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-LTKHLSGGQ  173 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~~~~LSgGe  173 (612)
                             ..|-+||+..|+..  +-..-|.-|.|.-..      .++    .+.+...|-.+||...+++ .+..|||||
T Consensus       647 -------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQ  709 (807)
T KOG0066|consen  647 -------NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQ  709 (807)
T ss_pred             -------cceeeeechhhhhHHhhccccCHHHHHHHhc------CCC----hHHHHHHhhhhhhhhccceEeeeecCCcc
Confidence                   22446899888643  333445555543221      122    2345667889999887776 578999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      |-||++|.--+..|+||||||||++||..+...+.+.|++.   ...||+++||..
T Consensus       710 KaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR  762 (807)
T KOG0066|consen  710 KARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER  762 (807)
T ss_pred             hHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence            99999999999999999999999999999999999888775   347889999964

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.84  E-value=3.8e-21  Score=200.34  Aligned_cols=179  Identities=27%  Similarity=0.382  Sum_probs=130.2

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-------EECCEeccch-Hhh-cc--ceEEEccCCCCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-------EINETRLQDH-RML-RK--ESCYIMQDNLLQE  120 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-------~~~g~~~~~~-~~~-~~--~i~yv~Q~~~l~~  120 (612)
                      ..++|++++|+||||-||||-+|+|+|.++|.-+. ..+.-       .+.|.++.+. +.+ ..  ++..=+|--.+.|
T Consensus        96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~-~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP  174 (591)
T COG1245          96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR-YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP  174 (591)
T ss_pred             CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC-CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence            35799999999999999999999999999884321 11110       1122221110 011 11  1222233211222


Q ss_pred             ---CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        121 ---LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       121 ---~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                         .-||.|-|.-.            +.+-+.+++++.++|++..|+.+++|||||-||++||.+++++.++.++|||||
T Consensus       175 k~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS  242 (591)
T COG1245         175 KVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS  242 (591)
T ss_pred             HHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence               12555544311            112357899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      -||...+....+.++++++.+++||++.||.. -+--++|-|.++..
T Consensus       243 yLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG  288 (591)
T COG1245         243 YLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG  288 (591)
T ss_pred             cccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence            99999999999999999998999999999974 34556788877753

>KOG0062|consensus

Probab=99.84  E-value=8.8e-21  Score=200.51  Aligned_cols=199  Identities=24%  Similarity=0.271  Sum_probs=157.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..+++.+|++.|..        +.-+++.+++..++.-+-.+++|+||+||||++|++.|-..|     .+|.+.+.+ 
T Consensus       360 ~p~l~i~~V~f~y~p--------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-----~rgi~~~~~-  425 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTP--------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-----TRGIVGRHP-  425 (582)
T ss_pred             CCeeEEEeeeccCCC--------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-----ccceeeecc-
Confidence            457889999987632        222799999999999999999999999999999999997765     456665443 


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKR  176 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR  176 (612)
                              |.+++|-.|...-+-.+.|-+- .+-+....+  .    .++.+++-+..+||+. .+...+.+||||||-|
T Consensus       426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr  490 (582)
T KOG0062|consen  426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--K----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSR  490 (582)
T ss_pred             --------cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--C----CHHHHHHHHHhcCCCchhhhccccccCCcchhH
Confidence                    4568999997654444444433 233333322  2    2455778899999975 4566689999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |++|.....+|.+|+|||||+.||..+-..+.+.|+..   +..||+++||.+ .+...|+.+++.++|++.-
T Consensus       491 vafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  491 VAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             HHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence            99999999999999999999999999999998888776   246899999964 7889999999999999864

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.84  E-value=1.9e-20  Score=180.24  Aligned_cols=74  Identities=26%  Similarity=0.339  Sum_probs=68.6

Q ss_pred             CChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        169 LSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       169 LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||||||||++||++++    .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++.  ....+|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence            9999999999999996    699999999999999999999999999999877899999999974  4578999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=3.2e-19  Score=216.42  Aligned_cols=126  Identities=26%  Similarity=0.286  Sum_probs=106.9

Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTT  197 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPts  197 (612)
                      |||.|.+.|...         ..+-.+.-+.|.++||... ..++..+|||||.||+-||.+|..+   +.+++|||||+
T Consensus      1661 mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635       1661 TPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred             CCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence            677777666421         1123455678899999875 5888889999999999999999876   78999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP  258 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  258 (612)
                      ||++.....+++.|++|.+.|.|||++.||+  ++.+.||.|+-|      +.|++++.|+|+++..
T Consensus      1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635       1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence            9999999999999999999999999999997  467789999999      3479999999998854

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.81  E-value=3.8e-20  Score=181.40  Aligned_cols=136  Identities=17%  Similarity=0.196  Sum_probs=104.2

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++.+++|+++.  +|++++|+||||||||||+|+|+|...          +...|.++..       ..+++|.+.+++.
T Consensus        13 ~~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~----------l~~~G~~v~a-------~~~~~q~~~l~~~   73 (199)
T cd03283          13 EKRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI----------LAQAGAPVCA-------SSFELPPVKIFTS   73 (199)
T ss_pred             CCeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH----------HHHcCCEEec-------CccCcccceEEEe
Confidence            35578888755  579999999999999999999998542          1123444321       1366777889999


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                      +|+.|++.++...      ...+ .+++.++++.+++                          .+|+++++||||+|+|+
T Consensus        74 ~~~~d~l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~  120 (199)
T cd03283          74 IRVSDDLRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNS  120 (199)
T ss_pred             ccchhccccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCH
Confidence            9999998764311      1222 3567888888873                          79999999999999999


Q ss_pred             HHHHHHH-HHHHHHHhCCCEEEEEecCCc
Q psy12625        202 LNATNLV-KLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       202 ~~~~~i~-~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ..+..+. ..++++.+.|.++|++||++.
T Consensus       121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~  149 (199)
T cd03283         121 RERQAASAAVLKFLKNKNTIGIISTHDLE  149 (199)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence            9998775 478888878999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.81  E-value=2.3e-19  Score=184.99  Aligned_cols=76  Identities=26%  Similarity=0.441  Sum_probs=68.6

Q ss_pred             CCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        168 HLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      .||||||||+++|++++.    +|+++++||||++||+..+..+.+.|+++.+ +.|+|+++|++.  +.+.+|+++.|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence            499999999999997654    9999999999999999999999999999864 789999999975  468999999998


Q ss_pred             CCe
Q psy12625        244 EGY  246 (612)
Q Consensus       244 ~G~  246 (612)
                      +|.
T Consensus       247 ~~~  249 (276)
T cd03241         247 KEV  249 (276)
T ss_pred             Eec
Confidence            763

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.81  E-value=2.7e-19  Score=197.84  Aligned_cols=127  Identities=26%  Similarity=0.397  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC---CEEEEeCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP---SIIFLDEPT  196 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p---~illlDEPt  196 (612)
                      .|||.|...|....         .+-.+.-+.|..+||.-. ..+....|||||.|||-+|.+|....   -+.+|||||
T Consensus       783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT  853 (935)
T COG0178         783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT  853 (935)
T ss_pred             hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence            37888887776432         123445577888999864 57788899999999999999999877   999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625        197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP  258 (612)
Q Consensus       197 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  258 (612)
                      +||-.....++++.|.+|.++|.|||++.|+.  ++...+|.|+-|      ..|+++..|+|+++.+
T Consensus       854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            99999999999999999999999999999997  468999999999      3579999999999864

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.80  E-value=2.9e-19  Score=184.26  Aligned_cols=206  Identities=22%  Similarity=0.323  Sum_probs=151.0

Q ss_pred             EEEEeEEEEEEeecc----------------ccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCC-
Q psy12625         21 LLFQDISYSALYYDT----------------HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPK-   83 (612)
Q Consensus        21 l~~~~ls~~~~~~~~----------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~-   83 (612)
                      +.++|+++.+.....                .........+|+|+|++++||++++|+|+|||||||||++|+|..... 
T Consensus       358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~  437 (593)
T COG2401         358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG  437 (593)
T ss_pred             cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence            667788877654321                011224567999999999999999999999999999999999975421 


Q ss_pred             --CCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc
Q psy12625         84 --KTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST  160 (612)
Q Consensus        84 --~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~  160 (612)
                        ...+++|.|.+--..         ..+.+|-+.. -+..-|+.|++.-    ..       .+-..+.+++++.|+.+
T Consensus       438 ee~y~p~sg~v~vp~nt---------~~a~iPge~Ep~f~~~tilehl~s----~t-------GD~~~AveILnraGlsD  497 (593)
T COG2401         438 EEKYRPDSGKVEVPKNT---------VSALIPGEYEPEFGEVTILEHLRS----KT-------GDLNAAVEILNRAGLSD  497 (593)
T ss_pred             ccccCCCCCceeccccc---------hhhccCcccccccCchhHHHHHhh----cc-------CchhHHHHHHHhhccch
Confidence              112467777553221         2344454321 1223455555421    11       11234678999999976


Q ss_pred             c--cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhc-c
Q psy12625        161 C--KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNM-A  236 (612)
Q Consensus       161 ~--~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~-~  236 (612)
                      .  ...+.++||-|||.|+.||.++...|.+++.||-.|.||+.++..+.+-|.++++ .|.|++++||.|+ .+-++ -
T Consensus       498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~P  576 (593)
T COG2401         498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRP  576 (593)
T ss_pred             hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCC
Confidence            4  3556789999999999999999999999999999999999999999999999997 5999999999985 34555 5


Q ss_pred             cceeeecCCeE
Q psy12625        237 DYLYVLTEGYC  247 (612)
Q Consensus       237 D~v~~L~~G~i  247 (612)
                      |+++.+.=|.+
T Consensus       577 D~li~vgYg~v  587 (593)
T COG2401         577 DTLILVGYGKV  587 (593)
T ss_pred             ceeEEeecccc
Confidence            88888776654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.80  E-value=7.3e-20  Score=182.35  Aligned_cols=153  Identities=20%  Similarity=0.143  Sum_probs=117.7

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceE-EEccCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQE  120 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~~  120 (612)
                      .+.+.+|++++.++|++++|.||||+||||||++++-.                        .+..++| |||.+...++
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~------------------------~~la~~g~~vpa~~~~~~   71 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI------------------------VLMAQIGCFVPCDSADIP   71 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH------------------------HHHHHhCCCcCcccEEEe
Confidence            45689999999999999999999999999999999721                        1112233 5655432211


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC---
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP---  195 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP---  195 (612)
                                                 .++++++.+|+++.   ...++|.|+++++.+++++  +.+|++++||||   
T Consensus        72 ---------------------------~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g  121 (222)
T cd03285          72 ---------------------------IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRG  121 (222)
T ss_pred             ---------------------------ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence                                       12344555666543   3578999999999999999  899999999999   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |++||+.+....  .++.+.+ .|.++|++||+  .++.+++|++..+++|++...++
T Consensus       122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence            999999888543  3355554 58899999997  36789999999999999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.78  E-value=5.5e-19  Score=167.70  Aligned_cols=74  Identities=31%  Similarity=0.442  Sum_probs=67.7

Q ss_pred             CChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        169 LSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||+||+||+++|++|..    +|+++++|||++|+|+.....+.+.+.++.+++.++|++||++.  +.+.+|+++.|..
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~  155 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK  155 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence            99999999999999987    78999999999999999999999999998766889999999974  4678999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.78  E-value=1.3e-18  Score=202.82  Aligned_cols=135  Identities=21%  Similarity=0.363  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHhccCCCCCH------HHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSR------KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII  190 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il  190 (612)
                      -.|||.|.+.|...+.......+      ++..+++ +.+..+||.+. .++.+.+|||||+|||.||++|+.+|  +++
T Consensus       433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll  511 (924)
T TIGR00630       433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY  511 (924)
T ss_pred             hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            35899999888766532211000      1122233 34778899875 79999999999999999999999986  899


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++|      ++|++++.|+++++.
T Consensus       512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            999999999999999999999999988999999999975 44 589999999      899999999987763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0064|consensus

Probab=99.77  E-value=3e-19  Score=188.67  Aligned_cols=187  Identities=21%  Similarity=0.343  Sum_probs=138.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|.++|+-.--+         ....++..++|++++|-.+.|.||||||||+|.|+|+|+-+-     ..|...+     
T Consensus       481 gI~lenIpvItP---------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-----y~g~L~~-----  541 (728)
T KOG0064|consen  481 GIILENIPVITP---------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-----YNGLLSI-----  541 (728)
T ss_pred             ceEEecCceecc---------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-----cCCeeec-----
Confidence            366777755432         345688999999999999999999999999999999999872     2333321     


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHH---hccCCCCCHHHHHHHHHHHHHHcCCccccCcccC---------
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK---------  167 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~---------  167 (612)
                       .   .+..+-|+||.|..- .-|.+|.+-++..   ++ .++++    ++..+.+|+.+.|++...+-.+         
T Consensus       542 -P---~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd  611 (728)
T KOG0064|consen  542 -P---RPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKD  611 (728)
T ss_pred             -C---CCcceEeccCCCccC-cCcccceeecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHh
Confidence             1   134599999998754 4577777766421   11 01222    3456777888888776655442         


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      .||||||||+++||.+-++|+.-+|||-||+..+.....+.+..+.   .|.+.+-++|+|+.  .++-..++
T Consensus       612 ~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl--wk~h~~ll  679 (728)
T KOG0064|consen  612 VLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL--WKYHTHLL  679 (728)
T ss_pred             hccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH--HHHHHHHH
Confidence            4999999999999999999999999999999998888877776544   58999999999974  44434443

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.76  E-value=1.9e-18  Score=201.72  Aligned_cols=135  Identities=24%  Similarity=0.385  Sum_probs=112.4

Q ss_pred             CCCCHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYS------RKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII  190 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il  190 (612)
                      ..+||.|.+.|...+..+....      -++..++++ .++.+||.+. .|+.+.+|||||||||.||++|..+|  +++
T Consensus       435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ll  513 (943)
T PRK00349        435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  513 (943)
T ss_pred             hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEE
Confidence            4589999998865543221100      012344554 7889999876 79999999999999999999999997  999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +|||||+|||+..+..+.+.|++++++|.|||+++|++. .+ ..||+|++|      ++|++++.|+++++.
T Consensus       514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence            999999999999999999999999888999999999976 44 569999999      899999999988763

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.75  E-value=1.3e-18  Score=171.19  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHH
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEES  127 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~  127 (612)
                      ..++++.+|++++|+|||||||||||++|++..-.    ...|...         ...+..+++..|..   ..++.   
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~----~~~g~~~---------~~~~~~i~~~dqi~---~~~~~---   81 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL----AQIGCFV---------PAESASIPLVDRIF---TRIGA---   81 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH----HHcCCCc---------cccccccCCcCEEE---EEecC---
Confidence            34455678999999999999999999999953210    0112110         00112234433211   11111   


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625        128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i  207 (612)
                                                     .+..+...+.++++++ |++.+.+++.+|+++++||||+|+|+.....+
T Consensus        82 -------------------------------~d~i~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l  129 (202)
T cd03243          82 -------------------------------EDSISDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI  129 (202)
T ss_pred             -------------------------------cccccCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence                                           1111222345565555 57777888999999999999999999998887


Q ss_pred             HH-HHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        208 VK-LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       208 ~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      .. +++.+.+.+.++|++||++  ++.+.+|++..++.|++...++.++.
T Consensus       130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  177 (202)
T cd03243         130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL  177 (202)
T ss_pred             HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence            65 5677777789999999985  46788999999999999988876443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0066|consensus

Probab=99.75  E-value=6.5e-19  Score=182.10  Aligned_cols=219  Identities=23%  Similarity=0.300  Sum_probs=154.6

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCC-CceeEE
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTE-TNSGYI   92 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~-~~~G~I   92 (612)
                      +.+.|.++|.+.+.          .++.++.|.|++|-.|..++++||||-||||||+-|+.+-   +|.-.. -.+-+|
T Consensus       261 na~DIKiEnF~ISA----------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv  330 (807)
T KOG0066|consen  261 NAMDIKIENFDISA----------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV  330 (807)
T ss_pred             hcccceeeeeeeec----------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence            34678888887765          5678999999999999999999999999999999999863   321000 012233


Q ss_pred             EECCEeccch--HhhccceEEEccCCC-----CCCCCCHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cC
Q psy12625         93 EINETRLQDH--RMLRKESCYIMQDNL-----LQELLTVEESLTV-AAHLKLGNQYSRKAKESKVDSIADSLSISTC-KN  163 (612)
Q Consensus        93 ~~~g~~~~~~--~~~~~~i~yv~Q~~~-----l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~  163 (612)
                      ..+..+..+.  +.-.++...+-.++.     --...|+.|-+.- +..++.   +.....+.++..+|.-+|.+.. .+
T Consensus       331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~  407 (807)
T KOG0066|consen  331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE  407 (807)
T ss_pred             eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc
Confidence            3333221110  000111222211111     1234577776642 334442   1223346678899999999765 56


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ++...+|||=|-||++||||..+|-+|.|||||+.||..+..-+-+.|+.+.   +|.++++||.. .+-..|..|+.|+
T Consensus       408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD  483 (807)
T KOG0066|consen  408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD  483 (807)
T ss_pred             CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence            6777899999999999999999999999999999999999999989998885   59999999976 6788999999999


Q ss_pred             CCeEE-EecC
Q psy12625        244 EGYCT-YQGT  252 (612)
Q Consensus       244 ~G~iv-~~G~  252 (612)
                      +-++- |.|.
T Consensus       484 ~qkLhyYrGN  493 (807)
T KOG0066|consen  484 NQKLHYYRGN  493 (807)
T ss_pred             hhhhhhhcch
Confidence            87764 3343

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.72  E-value=8e-17  Score=165.51  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             CCCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc-
Q psy12625        167 KHLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA-  236 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~-  236 (612)
                      .-+|+||||+++||++|+         .+|+++++||||++||+..+..+.+.++++.   .+ ++++|+.. .+...+ 
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~  256 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL  256 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence            348999999999999985         7999999999999999999999999998753   34 45555533 455666 


Q ss_pred             --cceeeecCCeE
Q psy12625        237 --DYLYVLTEGYC  247 (612)
Q Consensus       237 --D~v~~L~~G~i  247 (612)
                        ++++.+++|++
T Consensus       257 ~~~~i~~l~~g~i  269 (270)
T cd03242         257 RRAQIFRVDAGTL  269 (270)
T ss_pred             cCccEEEEeCcEE
Confidence              68999999985

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.72  E-value=1.4e-17  Score=163.70  Aligned_cols=137  Identities=18%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceE-EEccCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQ  119 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~  119 (612)
                      .++.+.+|++++.++|++++|+||||+||||+++++++..-                        ..++| +|   +...
T Consensus        14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~------------------------la~~G~~v---pa~~   66 (204)
T cd03282          14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI------------------------MAQIGCFV---PAEY   66 (204)
T ss_pred             CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH------------------------HHHcCCCc---chhh
Confidence            34578999999999999999999999999999999988531                        11112 23   2233


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL  199 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL  199 (612)
                      ..+++.|++                        +..++..+..++..+.+|+|++|+ +.+.+++++|+++++|||++|+
T Consensus        67 ~~l~~~d~I------------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt  121 (204)
T cd03282          67 ATLPIFNRL------------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT  121 (204)
T ss_pred             cCccChhhe------------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence            444555554                        222333344455667899999965 5667789999999999999999


Q ss_pred             CHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy12625        200 DYLNATNL-VKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       200 D~~~~~~i-~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      |+.....+ ...++.+.+.|.++|++||+..
T Consensus       122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~  152 (204)
T cd03282         122 SSADGFAISLAILECLIKKESTVFFATHFRD  152 (204)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            99776665 4567788878999999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.64  E-value=3.4e-16  Score=155.40  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=108.4

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++.+.+|++++.++ ++++|.||||||||||||.+++..-.       |+   .|..+   ...+..++++.|   +++.
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-------~~---~g~~v---p~~~~~i~~~~~---i~~~   79 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-------AQ---IGSFV---PASKAEIGVVDR---IFTR   79 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-------hc---cCCee---ccccceecceee---Eecc
Confidence            34588999999887 99999999999999999999875421       11   12221   111345677755   4566


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC---CCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP---TTG  198 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP---tsg  198 (612)
                      +++.|++..+.        +.-                           ..|+++++-+...+.+|+++++|||   |++
T Consensus        80 ~~~~~~ls~g~--------s~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~  124 (216)
T cd03284          80 IGASDDLAGGR--------STF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTST  124 (216)
T ss_pred             CCchhhhccCc--------chH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence            67766654320        000                           1122233333334679999999999   888


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        199 LDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      +|..+.  ....++.+.+. +.++|++||+.  ++.+++|++..+.+|++...+..+++.
T Consensus       125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~  180 (216)
T cd03284         125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV  180 (216)
T ss_pred             HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence            887552  23455555555 88999999995  578899998888889988877766654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.64  E-value=8.7e-16  Score=156.75  Aligned_cols=141  Identities=21%  Similarity=0.258  Sum_probs=98.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc---hHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIMQDNLLQELLTVEESLTVAAH  133 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~  133 (612)
                      .-++|+||||||||||+++|+|.++|     .+|+|.++|+++..   ..++.+.+++++|++ +.+.++|.++..    
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~-----~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~----  181 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST-----GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP----  181 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC-----CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch----
Confidence            57899999999999999999999986     58999999999742   245556678889865 334455544310    


Q ss_pred             hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625        134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD  213 (612)
Q Consensus       134 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~  213 (612)
                              +.      +                     |.   ..++  ...+|+++++|||++      ...+..+++.
T Consensus       182 --------k~------~---------------------~~---~~~i--~~~~P~villDE~~~------~e~~~~l~~~  215 (270)
T TIGR02858       182 --------KA------E---------------------GM---MMLI--RSMSPDVIVVDEIGR------EEDVEALLEA  215 (270)
T ss_pred             --------HH------H---------------------HH---HHHH--HhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence                    00      0                     00   2222  336999999999974      3334445555


Q ss_pred             HHhCCCEEEEEecCCchH-H-----------HhcccceeeecCCeEEEecCccCh
Q psy12625        214 MAHQGTMIICTLHQPSAS-L-----------LNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       214 l~~~g~tvi~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      + ++|.++|+|+|+++.+ +           ..+|||+++|++|+  ..|+++++
T Consensus       216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            4 4699999999986432 2           26689999999887  66666554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0063|consensus

Probab=99.63  E-value=1.8e-15  Score=156.93  Aligned_cols=176  Identities=24%  Similarity=0.326  Sum_probs=136.7

Q ss_pred             cccccceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC
Q psy12625         43 KDILKDISGVFVSK-----ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL  117 (612)
Q Consensus        43 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~  117 (612)
                      +.-+.+..+.|+.|     |++..+|.||.||||++++++|+++|.    ..|+|-.            -.++|=||.-.
T Consensus       349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd----~~~e~p~------------lnVSykpqkis  412 (592)
T KOG0063|consen  349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD----EGGEIPV------------LNVSYKPQKIS  412 (592)
T ss_pred             eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC----ccCcccc------------cceeccccccC
Confidence            45667788888777     578999999999999999999998873    2333321            23667777654


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                      --..-||++.+.--  .+.     .-...+-+.++++-|.+++..|+.+.+|||||.|||++|..|=..+++.+.|||.+
T Consensus       413 pK~~~tvR~ll~~k--Ir~-----ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA  485 (592)
T KOG0063|consen  413 PKREGTVRQLLHTK--IRD-----AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA  485 (592)
T ss_pred             ccccchHHHHHHHH--hHh-----hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence            44456888876432  110     11123567889999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeee
Q psy12625        198 GLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      -||+..+..--+.+++.- +.++|-.++.||.-- .--++|||++.
T Consensus       486 ylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf  530 (592)
T KOG0063|consen  486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVF  530 (592)
T ss_pred             hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEE
Confidence            999999999999998874 467899999999642 33578888654

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.57  E-value=2.2e-15  Score=146.08  Aligned_cols=93  Identities=15%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             HHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchH
Q psy12625        154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQ-GTMIICTLHQPSAS  231 (612)
Q Consensus       154 ~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~~~H~~~~~  231 (612)
                      ..++.++..++..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++  +
T Consensus        47 ~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~  123 (185)
T smart00534       47 TRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--E  123 (185)
T ss_pred             EEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--H
Confidence            3344455556667789998887444443 34599999999999999999887765 566777764 89999999996  4


Q ss_pred             HHhcccceeeecCCeEEE
Q psy12625        232 LLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       232 i~~~~D~v~~L~~G~iv~  249 (612)
                      +.+.+|+.--+.++++..
T Consensus       124 l~~~~~~~~~v~~~~~~~  141 (185)
T smart00534      124 LTKLADEHPGVRNLHMSA  141 (185)
T ss_pred             HHHHhhcCccceEEEEEE
Confidence            678887644444454443

>PRK00064 recF recombination protein F; Reviewed

Probab=99.55  E-value=1.1e-13  Score=147.76  Aligned_cols=76  Identities=25%  Similarity=0.385  Sum_probs=64.3

Q ss_pred             CCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc--
Q psy12625        168 HLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA--  236 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~--  236 (612)
                      .+|+||+|+++||+.|+         .+|+|+++|||+++||+..+..+++.+.++   +..+++|+|++. .+...+  
T Consensus       273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~~  348 (361)
T PRK00064        273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLEN  348 (361)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhcc
Confidence            49999999999999886         799999999999999999999999988764   357888888865 344443  


Q ss_pred             cceeeecCCeE
Q psy12625        237 DYLYVLTEGYC  247 (612)
Q Consensus       237 D~v~~L~~G~i  247 (612)
                      ++++.+++|++
T Consensus       349 ~~i~~v~~G~i  359 (361)
T PRK00064        349 AKIFHVEQGKI  359 (361)
T ss_pred             CcEEEEeCCEE
Confidence            47899999986

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.53  E-value=4e-15  Score=148.13  Aligned_cols=89  Identities=30%  Similarity=0.455  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy12625        146 ESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI  221 (612)
Q Consensus       146 ~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv  221 (612)
                      .+.+.+.++..++...      .+|||||.+++||.-|+    .+.++++||||.++||...+..+.++|+++.+ +.-+
T Consensus       120 ~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~  192 (220)
T PF02463_consen  120 LKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF  192 (220)
T ss_dssp             HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE
T ss_pred             cccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            3456667776666543      89999999999997664    57799999999999999999999999999875 4778


Q ss_pred             EEEecCCchHHHhcccceeeec
Q psy12625        222 ICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       222 i~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      |++||++  ..+..+|+.+.+.
T Consensus       193 ii~Th~~--~~~~~a~~~~~v~  212 (220)
T PF02463_consen  193 IITTHNP--EMFEDADKLIGVT  212 (220)
T ss_dssp             EEE-S-H--HHHTT-SEEEEEE
T ss_pred             ccccccc--ccccccccccccc
Confidence            9999995  5789999887663

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.53  E-value=1.7e-12  Score=130.69  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=161.4

Q ss_pred             HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--HH----HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhH
Q psy12625        346 RTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI-GDD--AA----RVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEI  418 (612)
Q Consensus       346 R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~-~~~--~~----~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v  418 (612)
                      |+++...|||.....-+++.++..+++|.++-.. +.+  ..    ..+--.|.+.+.....+......  ....+|+.+
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~~--~~~~~~~g~   78 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGIS--VIWDRQFGF   78 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHhCH
Confidence            6778889999999999999999999999887542 111  11    11122333333333333222111  111233344


Q ss_pred             HHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChh
Q psy12625        419 TRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVK  497 (612)
Q Consensus       419 ~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~  497 (612)
                      +.|=+.+. .+...|+++|.+.+++..++..+++..+.|++.+.+.  ..++.+++..++..++..++|.++++. ++.+
T Consensus        79 ~~~~~~~P-~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~  155 (236)
T TIGR01247        79 LKEILVAP-ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME  155 (236)
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            44433333 4678999999999999999999999999988877553  345555566667777889999999998 7788


Q ss_pred             HHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCC
Q psy12625        498 NGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMK  577 (612)
Q Consensus       498 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~  577 (612)
                      .+..+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-....+. .                        .
T Consensus       156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-~------------------------~  210 (236)
T TIGR01247       156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-S------------------------P  210 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-C------------------------c
Confidence            88888999999999999999999999999999999999999999966543321 0                        0


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHH
Q psy12625        578 NGDYSYDLFFLIVSYILVKIASYL  601 (612)
Q Consensus       578 ~~~~~~~~~il~~~~~~~~~~~~~  601 (612)
                      ..+.+.++++|+++.+++.+++..
T Consensus       211 ~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       211 TFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH
Confidence            124566889999988888777654

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01069 mutS2 MutS2 family protein

Probab=99.50  E-value=3.8e-14  Score=163.90  Aligned_cols=129  Identities=20%  Similarity=0.197  Sum_probs=91.9

Q ss_pred             eEEEEeCC-eEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCCCCHH
Q psy12625         49 ISGVFVSK-ELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQELLTVE  125 (612)
Q Consensus        49 vs~~i~~G-e~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~  125 (612)
                      +|+.+.+| ++++|.||||+|||||||+|+|.. .+     ..|                   .+||.... .++   +.
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-----q~G-------------------~~Vpa~~~~~~~---~~  366 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-----QSG-------------------IPIPANEHSEIP---YF  366 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-----HhC-------------------CCccCCcccccc---ch
Confidence            78888877 999999999999999999999862 21     112                   13333221 111   11


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                      +.+.    .    ....                .+......+++|+|+++++.|++.+ .+|+++++|||++|+|+....
T Consensus       367 d~i~----~----~i~~----------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~  421 (771)
T TIGR01069       367 EEIF----A----DIGD----------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS  421 (771)
T ss_pred             hhee----e----ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence            1110    0    0000                1111223567999999999999876 899999999999999999999


Q ss_pred             HH-HHHHHHHHhCCCEEEEEecCCc
Q psy12625        206 NL-VKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       206 ~i-~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      .+ ..+++.+++.|.++|++||+..
T Consensus       422 ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       422 ALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             HHHHHHHHHHHhcCCEEEEECChHH
Confidence            99 5788888888999999999964

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.49  E-value=1.6e-13  Score=135.99  Aligned_cols=130  Identities=19%  Similarity=0.155  Sum_probs=86.5

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC-
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE-  120 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~-  120 (612)
                      .+-+|+++.=..+..++|.||||+|||||||.++.  ...      ..|......         .-.++|..|....+. 
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la------~~G~~v~a~---------~~~~~~~d~i~~~l~~   81 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA------HIGSFVPAD---------SATIGLVDKIFTRMSS   81 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH------hCCCeeEcC---------CcEEeeeeeeeeeeCC
Confidence            34456664322238999999999999999999984  222      234332211         123667666432111 


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCC--hhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS--GGQKKRLSIALELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~p~illlDEPtsg  198 (612)
                      ..++.                                         .++|  .-|-||++++++++.+|+++++|||++|
T Consensus        82 ~~si~-----------------------------------------~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~g  120 (213)
T cd03281          82 RESVS-----------------------------------------SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG  120 (213)
T ss_pred             ccChh-----------------------------------------hccchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence            01111                                         1122  3567899999999999999999999999


Q ss_pred             CCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy12625        199 LDYLNATNL-VKLLRDMAHQ---GTMIICTLHQPS  229 (612)
Q Consensus       199 LD~~~~~~i-~~~l~~l~~~---g~tvi~~~H~~~  229 (612)
                      +|+.....+ ...++++.+.   +.++|++||++.
T Consensus       121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281         121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            999765444 5688888764   358999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063|consensus

Probab=99.48  E-value=6.1e-14  Score=145.72  Aligned_cols=189  Identities=21%  Similarity=0.310  Sum_probs=124.8

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA  132 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~  132 (612)
                      -+||++.+++|.||-||||-|++++|..+|.-+..+.+-.+-++.......++....-=+- ++.+-......+...+..
T Consensus        97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~l-e~~lk~~~kpQyvd~ipr  175 (592)
T KOG0063|consen   97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL-EDNLKAIIKPQYVDQIPR  175 (592)
T ss_pred             CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhc-cccccCcCChHHHHHHHH
Confidence            3589999999999999999999999999875332222221111100000001100000000 011111011111111111


Q ss_pred             Hhc--cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy12625        133 HLK--LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL  210 (612)
Q Consensus       133 ~l~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~  210 (612)
                      ..+  .+....+...++..+++++.+.|.+..++-+.+|||||-||.+||.+-+.+.++.++|||.+-||...+..-...
T Consensus       176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~  255 (592)
T KOG0063|consen  176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT  255 (592)
T ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence            111  000111222334677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       211 l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ++.+.....-||++.||.+ -+--+.|-+..|.
T Consensus       256 IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLY  287 (592)
T KOG0063|consen  256 IRSLINPDRYIIVVEHDLS-VLDYLSDFICCLY  287 (592)
T ss_pred             HHHhhCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence            9999988889999999986 3445678777775

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.45  E-value=2.1e-12  Score=127.43  Aligned_cols=149  Identities=12%  Similarity=0.029  Sum_probs=121.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-CChhHHHHHHHHH
Q psy12625        428 FSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-LDVKNGVIFGPLT  506 (612)
Q Consensus       428 Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~~~~~a~~~~~~~  506 (612)
                      -+...++++|.+..++..+++++++..+.|++.|++++  .+..+++.+++..++..++|.++++. .+..  .....+.
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~--~~~~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVG--RFLALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHH
Confidence            35567899999999999999999999999999999865  56777888888999999999999998 5443  3334445


Q ss_pred             HHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCCchhhHH
Q psy12625        507 LLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF  586 (612)
Q Consensus       507 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~  586 (612)
                      +.+.+.++|.+.|.+.+|.|++|+.+++|++|+.+++-...++++                          ....|.+++
T Consensus       133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~--------------------------~~~~~~~~~  186 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN--------------------------DGTLWQAVA  186 (208)
T ss_pred             HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc--------------------------HHHHHHHHH
Confidence            567777899999999999999999999999999999976655310                          124578899


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy12625        587 FLIVSYILVKIASYLVLYFQ  606 (612)
Q Consensus       587 il~~~~~~~~~~~~~~L~~~  606 (612)
                      +|+++.+++.++++...|++
T Consensus       187 ~L~~~~~v~~~la~~~~~~~  206 (208)
T TIGR03062       187 VLLLILVVFLALSLLSARRK  206 (208)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999998888877776533

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.42  E-value=3.7e-11  Score=122.39  Aligned_cols=237  Identities=13%  Similarity=0.029  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHH--HHHHHHHHHHHHHHHH-HHHhhhccc
Q psy12625        340 FCILLKRTLIKCFRD-RFLTKVRLSLHLIIGSFLGIMYRGIGDDAAR--VHN--NLSLLFFSTMFLMFTA-LSSMIITYP  413 (612)
Q Consensus       340 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~--~~~--~~g~lff~~~~~~~~~-~~~~~~~f~  413 (612)
                      ...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+  ..+  --|++-+++++.++.. ....+..+ 
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~-   85 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARM-   85 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            345669999999999 9999999999999888888887543111111  111  1133333233222111 11111111 


Q ss_pred             chhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q psy12625        414 LEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI  493 (612)
Q Consensus       414 ~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~  493 (612)
                      .|+..++|-+... -++..+.+||++.+.-..++..++...+.+++ |..+. ......+..+++..++..++|.++|++
T Consensus        86 r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~  162 (253)
T TIGR01291        86 RVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAAL  162 (253)
T ss_pred             HHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1333444444344 27889999999999777777766655554443 44333 334444555666777888999999999


Q ss_pred             -CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHH
Q psy12625        494 -LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLD  572 (612)
Q Consensus       494 -~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~  572 (612)
                       ++.+.+..+..++..|++.+||.+.|.+.+|.|++|+.+++|++|+.|++=...++.                      
T Consensus       163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~----------------------  220 (253)
T TIGR01291       163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG----------------------  220 (253)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC----------------------
Confidence             788888888899999999999999999999999999999999999999865443321                      


Q ss_pred             HcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12625        573 ALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQ  606 (612)
Q Consensus       573 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~  606 (612)
                          +..+.|.++++++++.+++..++....|++
T Consensus       221 ----~~~~~~~~~~~l~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       221 ----PGTQVGLHLGALCLYAVVPFFISAALLRRR  250 (253)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                011235678889888888888777766654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.41  E-value=4.7e-13  Score=132.75  Aligned_cols=45  Identities=24%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPT-----TGLDYLNATNLVKLLRDMAH  216 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPt-----sgLD~~~~~~i~~~l~~l~~  216 (612)
                      -|++++.||++++.+|+++++||||     +|||+.++..+.+.++++++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            3999999999999999999999999     99999999999999999975

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.40  E-value=3.8e-11  Score=120.60  Aligned_cols=223  Identities=11%  Similarity=0.082  Sum_probs=145.7

Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhhccCCCcch
Q psy12625        352 FRDRFLTKVRLSLHLIIGSFLGIMYRGIGDDAARVH-NNLSLLFFSTMFLMFTALSSMIITYPLEFEITRREHFNRWFSL  430 (612)
Q Consensus       352 ~Rd~~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~-~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~  430 (612)
                      +|||.....-+.+.+++-++.+.+|-+... ....+ --.|.+-+..+........ .......|...+.|=+... .+.
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~er~~G~l~rl~~~P-~~~   78 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQA-IAVARDRRYGALKRLGATP-LPR   78 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHhcCC-CcH
Confidence            699999998899888887888777765211 11111 1222222222222222111 1112223445566666655 488


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhc-C---ChhHHHHHHHHH
Q psy12625        431 KAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGMI-L---DVKNGVIFGPLT  506 (612)
Q Consensus       431 ~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~~-~---~~~~a~~~~~~~  506 (612)
                      ..|+++|.+..++..++...++ .+++++.|.+..... ...++...+....+.+++.+++++ .   +.+.+..++++.
T Consensus        79 ~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~  156 (232)
T TIGR00025        79 LGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV  156 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999998888877665555 455677788865433 233444445556666677776666 3   344457788888


Q ss_pred             HHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCCchhhHH
Q psy12625        507 LLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGDYSYDLF  586 (612)
Q Consensus       507 ~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~~~~~~~  586 (612)
                      .+|++++||.+.|.+.+|.|++|+.+++|++|+.+++-....+  .                       -+....|.+++
T Consensus       157 ~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~--~-----------------------~~~~~~~~~~~  211 (232)
T TIGR00025       157 WFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV--S-----------------------VDTFGAVRDLV  211 (232)
T ss_pred             HHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC--C-----------------------CChhhHHHHHH
Confidence            9999999999999999999999999999999999987543221  1                       01234577888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy12625        587 FLIVSYILVKIASYLVLY  604 (612)
Q Consensus       587 il~~~~~~~~~~~~~~L~  604 (612)
                      +++++.+++..++....+
T Consensus       212 ~l~~~~~v~~~la~~~~~  229 (232)
T TIGR00025       212 VVLAFWVALAALAAIRLR  229 (232)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888888887776666554

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.40  E-value=3.1e-13  Score=117.94  Aligned_cols=75  Identities=15%  Similarity=-0.038  Sum_probs=61.5

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~  120 (612)
                      +.+|+++++++++||+++|+||||||||||++++.           +|++.++|.++...  ...++..++++|+  ++ 
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-   67 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-   67 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-
Confidence            46899999999999999999999999999999985           37899999986433  3345667777777  33 


Q ss_pred             CCCHHHHHHHH
Q psy12625        121 LLTVEESLTVA  131 (612)
Q Consensus       121 ~lTv~e~l~~~  131 (612)
                      ..|++|||.++
T Consensus        68 ~~ti~~Ni~~~   78 (107)
T cd00820          68 EIRLRLNIFLI   78 (107)
T ss_pred             hhhHHhhceee
Confidence            36999999873

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.38  E-value=2.4e-12  Score=128.03  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC-CCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY-RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~-~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      +.+.+|+++.+++|++++|.||||+||||+++++++. ..+     ..|...... .. ....+.+...-+...|.+...
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la-----~~G~~v~a~-~~-~~~~~~~i~~~~~~~d~~~~~   90 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA-----QIGSFVPAS-SA-TLSIFDSVLTRMGASDSIQHG   90 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH-----hCCCEEEcC-ce-EEeccceEEEEecCccccccc
Confidence            5689999999999999999999999999999999994 332     345433221 10 001111111222222221111


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                      ++     .|                                        ..|-+|++-...-+++|+++|+|||.+|.|+
T Consensus        91 ~S-----tF----------------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~  125 (222)
T cd03287          91 MS-----TF----------------------------------------MVELSETSHILSNCTSRSLVILDELGRGTST  125 (222)
T ss_pred             cc-----hH----------------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence            11     11                                        1233333333344678999999999999987


Q ss_pred             HHHHHH-HHHHHHHHhC-CCEEEEEecCCchHHHhcc
Q psy12625        202 LNATNL-VKLLRDMAHQ-GTMIICTLHQPSASLLNMA  236 (612)
Q Consensus       202 ~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~  236 (612)
                      .....+ ...++.+.+. +.++|++||++.  +.++.
T Consensus       126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~  160 (222)
T cd03287         126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL  160 (222)
T ss_pred             hhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence            777764 5677777775 889999999974  34444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.37  E-value=2.1e-10  Score=116.71  Aligned_cols=236  Identities=14%  Similarity=0.115  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC------C---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12625        337 LSQFCILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI-GD------D---AARVHNNLSLLFFSTMFLMFTALS  406 (612)
Q Consensus       337 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~-~~------~---~~~~~~~~g~lff~~~~~~~~~~~  406 (612)
                      +++++.+++|.++...|||.....-+++.++.-+++|.+|-.. +.      +   .-...--.|.+-+.+.+..+.+..
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~   80 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL   80 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999988442 11      1   111222234433333333322211


Q ss_pred             HhhhcccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHH
Q psy12625        407 SMIITYPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGM  486 (612)
Q Consensus       407 ~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~  486 (612)
                      .  ....+|+..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.+...+......+++..++..++
T Consensus        81 ~--~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l  156 (253)
T TIGR03861        81 S--MVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL  156 (253)
T ss_pred             H--hHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1  12223333444444444 4778899999999987777766555444433 366555444444445556677778899


Q ss_pred             HhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCC---cccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCcc
Q psy12625        487 GVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDS---PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYC  562 (612)
Q Consensus       487 g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C  562 (612)
                      |.++|++ ++.+.+..+.++++.+++..||.+.|.+.+   |.|++|+.+++|+.|..|++=..-++  +          
T Consensus       157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g--~----------  224 (253)
T TIGR03861       157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYG--Q----------  224 (253)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhC--C----------
Confidence            9999998 777778888888899999999999998766   88999999999999999877533221  0          


Q ss_pred             ccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12625        563 HFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYF  605 (612)
Q Consensus       563 ~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~  605 (612)
                                       .-|..+.+++++.+++..++....|+
T Consensus       225 -----------------~~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       225 -----------------LNLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             -----------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence                             01556677777777777776665543

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.36  E-value=7.2e-13  Score=153.81  Aligned_cols=86  Identities=20%  Similarity=0.205  Sum_probs=67.5

Q ss_pred             cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      .....+.+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..
T Consensus       384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~  461 (782)
T PRK00409        384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREG  461 (782)
T ss_pred             hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCC
Confidence            3445678999999999999998 8999999999999999999988864 67777778899999999964 2333445444


Q ss_pred             eecCCeEEEe
Q psy12625        241 VLTEGYCTYQ  250 (612)
Q Consensus       241 ~L~~G~iv~~  250 (612)
                      + .++.+.+.
T Consensus       462 v-~~~~~~~d  470 (782)
T PRK00409        462 V-ENASVEFD  470 (782)
T ss_pred             e-EEEEEEEe
Confidence            4 35666553

>PRK14079 recF recombination protein F; Provisional

Probab=99.32  E-value=2.8e-11  Score=128.83  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             CChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce
Q psy12625        169 LSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL  239 (612)
Q Consensus       169 LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v  239 (612)
                      +|+||+|++++|..|+         .+|++++||||+++||...+..+.+.|.+..   .++|.+++.+     ..+|++
T Consensus       264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~~  335 (349)
T PRK14079        264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAALT  335 (349)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCceE
Confidence            8999999999999999         8999999999999999999999998886532   3444444432     578999


Q ss_pred             eeecCCeEEEecC
Q psy12625        240 YVLTEGYCTYQGT  252 (612)
Q Consensus       240 ~~L~~G~iv~~G~  252 (612)
                      +.+.+|++.-..|
T Consensus       336 ~~~~~~~~~~~~~  348 (349)
T PRK14079        336 LRIEAGVFTPEAP  348 (349)
T ss_pred             EEEeccEecCCCC
Confidence            9999998754443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.31  E-value=1.4e-11  Score=133.67  Aligned_cols=176  Identities=15%  Similarity=0.183  Sum_probs=114.2

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch----------HhhccceEE
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH----------RMLRKESCY  111 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~----------~~~~~~i~y  111 (612)
                      +..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++     ..|.|.+.|++-.+.          ..+++.+.+
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v  218 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-----DLNVIALIGERGREVREFIERDLGPEGLKRSIVV  218 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE
Confidence            35689999 99999999999999999999999999999875     579999865442211          235678899


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH-HHHhhCCCEE
Q psy12625        112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA-LELLSNPSII  190 (612)
Q Consensus       112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia-~aL~~~p~il  190 (612)
                      +.+.+.-     +.+-..-+ ..          . -.+-|.+..-|-+-..  ...+++     |.+-| |++.     +
T Consensus       219 v~~~~~~-----~~~r~~~~-~~----------a-~~iAEyfr~~g~~Vll--~~Dslt-----r~A~A~rEis-----l  269 (438)
T PRK07721        219 VATSDQP-----ALMRIKGA-YT----------A-TAIAEYFRDQGLNVML--MMDSVT-----RVAMAQREIG-----L  269 (438)
T ss_pred             EECCCCC-----HHHHHHHH-HH----------H-HHHHHHHHHCCCcEEE--EEeChH-----HHHHHHHHHH-----H
Confidence            9765431     11111000 00          0 0111222222211000  001111     11111 1111     1


Q ss_pred             EEeCC--CCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        191 FLDEP--TTGLDYLNATNLVKLLRDMAH--QGT-----MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       191 llDEP--tsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      .+.||  |+|+|+.....+.++++++.+  +|.     ||++.+||.++   .+||++..+.+|+++..++..+
T Consensus       270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence            12343  789999999999999999974  675     99999999873   7899999999999999997764

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.30  E-value=4e-12  Score=144.13  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             ccCCCChhhhhHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625        165 LTKHLSGGQKKRLSIALELL----------SNPSIIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL  233 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~----------~~p~illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~  233 (612)
                      .+.+||||||||++||++|+          .+|++++||||| ++||+.+...+.+.|+++  +|.+||++||++.  ..
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence            44689999999999999987          599999999998 789999999999999998  5889999999964  46


Q ss_pred             hcccceeeecC-CeE
Q psy12625        234 NMADYLYVLTE-GYC  247 (612)
Q Consensus       234 ~~~D~v~~L~~-G~i  247 (612)
                      ..+|++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            78999999986 543

>TIGR00634 recN DNA repair protein RecN

Probab=99.30  E-value=4.2e-12  Score=143.50  Aligned_cols=76  Identities=22%  Similarity=0.387  Sum_probs=69.4

Q ss_pred             CCChhhhhHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        168 HLSGGQKKRLSIALELLSN----PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~----p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      .+||||+||++||++++..    |+++|+||||+|||+.++..+.+.|+++++ +++||++||++.  +...||++++|+
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~  516 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVE  516 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEE
Confidence            4899999999999999985    699999999999999999999999999975 899999999975  457899999998


Q ss_pred             CCe
Q psy12625        244 EGY  246 (612)
Q Consensus       244 ~G~  246 (612)
                      +|.
T Consensus       517 k~~  519 (563)
T TIGR00634       517 KEG  519 (563)
T ss_pred             Ecc
Confidence            864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.29  E-value=6.1e-12  Score=151.92  Aligned_cols=87  Identities=22%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CccccCcccCCCChhhhhHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625        158 ISTCKNTLTKHLSGGQKKRLSIALELLS----------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ  227 (612)
Q Consensus       158 L~~~~~~~~~~LSgGerqRv~ia~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~  227 (612)
                      +....++.+++|||||++||+||++|+.          +|++||+||||+|||+.+...+++.|+++.+.|++|+++||+
T Consensus       940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618       940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred             CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence            3445567889999999999999999986          799999999999999999999999999998889999999999


Q ss_pred             CchHHHhcccceeeecCC
Q psy12625        228 PSASLLNMADYLYVLTEG  245 (612)
Q Consensus       228 ~~~~i~~~~D~v~~L~~G  245 (612)
                      +. ....++|+|.|++.|
T Consensus      1020 ~~-~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1020 PE-FRERIPHRILVKKTN 1036 (1042)
T ss_pred             HH-HHHhhCCEEEEEECC
Confidence            76 578899999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.29  E-value=4e-12  Score=128.47  Aligned_cols=181  Identities=16%  Similarity=0.182  Sum_probs=105.8

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE--CCEeccchHhhccc---eEEEccCCCCCCCC---
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--NETRLQDHRMLRKE---SCYIMQDNLLQELL---  122 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~--~g~~~~~~~~~~~~---i~yv~Q~~~l~~~l---  122 (612)
                      +.+.+||.++|+||+|+|||||++.|++.....   .....+.+  -+++-.+...+.+.   +-.+.+-+. .+..   
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~---~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~   86 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN---HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQ   86 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccc---cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHH
Confidence            378899999999999999999999999987632   11223222  22221122222221   222333222 1100   


Q ss_pred             CHHHHHHHHHHhc-cCCCC--CHHHHHHHHHHHHHHcCCccccCcccCCCChhh--------hhHHHHHHHHhhCCCEEE
Q psy12625        123 TVEESLTVAAHLK-LGNQY--SRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--------KKRLSIALELLSNPSIIF  191 (612)
Q Consensus       123 Tv~e~l~~~~~l~-~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--------rqRv~ia~aL~~~p~ill  191 (612)
                      ..+.-+..+...+ .+.+.  --++ -.+..+..+++++     .....+||||        +||+++||++..+++|.+
T Consensus        87 ~~~~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~  160 (249)
T cd01128          87 VAEMVLEKAKRLVEHGKDVVILLDS-ITRLARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI  160 (249)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEC-HHHhhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence            0111111111111 00000  0000 0111111222221     1223589999        999999999999999999


Q ss_pred             EeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        192 LDEPTTGLDYLNATN-LVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       192 lDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      +  ||+.+|+.+... ++  +.++...+.|.|+.+|+...  ...+|.|.+|+.|..
T Consensus       161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr  211 (249)
T cd01128         161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR  211 (249)
T ss_pred             e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence            9  999999655544 54  55555567899999999753  689999999999986

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK10869 recombination and repair protein; Provisional

Probab=99.26  E-value=1.1e-11  Score=139.04  Aligned_cols=75  Identities=23%  Similarity=0.487  Sum_probs=68.8

Q ss_pred             CChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        169 LSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +||||+||++||++++.    +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|.  +...+|+.+.+.+
T Consensus       431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k  507 (553)
T PRK10869        431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK  507 (553)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence            79999999999999997    5899999999999999999999999999975 689999999985  5689999999987


Q ss_pred             Ce
Q psy12625        245 GY  246 (612)
Q Consensus       245 G~  246 (612)
                      +.
T Consensus       508 ~~  509 (553)
T PRK10869        508 ET  509 (553)
T ss_pred             cc
Confidence            53

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.26  E-value=4e-11  Score=133.86  Aligned_cols=136  Identities=23%  Similarity=0.374  Sum_probs=105.8

Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHH------HHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhC--CCEE
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI------ADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSN--PSII  190 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~--p~il  190 (612)
                      ..+++.|.+.|...+.+... .....+..+.++      |..+||... .++..+.|||||.||+-+|..+=++  -=+.
T Consensus       427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY  505 (935)
T COG0178         427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  505 (935)
T ss_pred             hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence            34777888888766653211 111112222333      444678764 5888899999999999999998665  2467


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625        191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP  258 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  258 (612)
                      +||||+-||-+..-.++++.|++|++.|-|+|++.||+  +....+|+|+-|      ..|+|+++|+++++..
T Consensus       506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence            99999999999999999999999999999999999996  467899999998      4589999999998753

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.25  E-value=7.1e-11  Score=114.11  Aligned_cols=89  Identities=10%  Similarity=0.022  Sum_probs=72.9

Q ss_pred             HcCCccccCcccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEe
Q psy12625        155 SLSISTCKNTLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLD---YLNATNLVKLLRDMAHQGTMIICTL  225 (612)
Q Consensus       155 ~lgL~~~~~~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~  225 (612)
                      ..|+....+..+..+|+||+|      +.........+|+++++|||++.+|   ...+..+.+.++.+++.|.|+|+++
T Consensus        58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~  137 (187)
T cd01124          58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS  137 (187)
T ss_pred             hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            445556677888899999998      4555555667999999999999999   8888889999999988899999999


Q ss_pred             cCCch--------HHHhcccceeeec
Q psy12625        226 HQPSA--------SLLNMADYLYVLT  243 (612)
Q Consensus       226 H~~~~--------~i~~~~D~v~~L~  243 (612)
                      |+...        .+..++|.++.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         138 EQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             ccccCCCcccCcCceeEeeeEEEEEE
Confidence            98653        1567889998886

A related protein is found in archaea.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.24  E-value=1.3e-11  Score=122.48  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++.+-+|+++..++|++++|.||||+||||+++++++..--.    ..|      ..+.- +  ...++++   +.++..
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la----~~G------~~vpa-~--~~~i~~~---~~i~~~   79 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA----QMG------MDVPA-K--SMRLSLV---DRIFTR   79 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH----HcC------CccCc-c--ccEeccc---cEEEEe
Confidence            456889999999999999999999999999999998853210    001      11100 0  0111111   112221


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCCh--hhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSG--GQKKRLSIALELLSNPSIIFLDEPTTGL  199 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg--GerqRv~ia~aL~~~p~illlDEPtsgL  199 (612)
                      +...|++.                                     .++|-  .|-+|++-....+++|+++++|||.+|+
T Consensus        80 ~~~~d~~~-------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt  122 (218)
T cd03286          80 IGARDDIM-------------------------------------KGESTFMVELSETANILRHATPDSLVILDELGRGT  122 (218)
T ss_pred             cCcccccc-------------------------------------cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence            11222221                                     01110  2334444444446789999999999999


Q ss_pred             CHHHHHHHHHH-HHHHHhC-CCEEEEEecCCc
Q psy12625        200 DYLNATNLVKL-LRDMAHQ-GTMIICTLHQPS  229 (612)
Q Consensus       200 D~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~  229 (612)
                      |+.....+... ++.+.+. +.++|++||++.
T Consensus       123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286         123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            99999999888 7888775 899999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.24  E-value=5.2e-11  Score=119.50  Aligned_cols=150  Identities=19%  Similarity=0.216  Sum_probs=89.1

Q ss_pred             EEeCCeEEEEECCCCCcHHHH-HHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHH
Q psy12625         52 VFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV  130 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTL-L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~  130 (612)
                      -+++|+++.|.|||||||||| ++.+++..++.     ..                  +.|+..+      .|..+.+..
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-----~~------------------~~yi~~e------~~~~~~~~~   70 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-----YS------------------VSYVSTQ------LTTTEFIKQ   70 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-----Cc------------------EEEEeCC------CCHHHHHHH
Confidence            389999999999999999999 79999875420     11                  2333321      233344433


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q psy12625        131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGL----DYL  202 (612)
Q Consensus       131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgL----D~~  202 (612)
                      ...+..  ..         ++.... |.-...+-. ..+|+++.++-.+.+.+-    .+|+++++||||+++    |+.
T Consensus        71 ~~~~g~--~~---------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~  137 (230)
T PRK08533         71 MMSLGY--DI---------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV  137 (230)
T ss_pred             HHHhCC--ch---------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence            322211  10         011110 100011111 235666655544444333    369999999999999    888


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchH------HHhcccceeeec
Q psy12625        203 NATNLVKLLRDMAHQGTMIICTLHQPSAS------LLNMADYLYVLT  243 (612)
Q Consensus       203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------i~~~~D~v~~L~  243 (612)
                      ....+.+.+++++++|.|+++++|+....      +..++|-|+.|+
T Consensus       138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence            88999999999988888887776643210      123456666664

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.23  E-value=8e-12  Score=124.72  Aligned_cols=63  Identities=35%  Similarity=0.530  Sum_probs=54.0

Q ss_pred             CCCChhhhhHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        167 KHLSGGQKKRLSIALELLSNP---SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ..+|.|+||.+.++..+...+   .++++|||-++|+|..+..+++.|+++++.+..+|+|||.|.
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            357999999999999988777   899999999999999999999999888776889999999974

>PRK13695 putative NTPase; Provisional

Probab=99.21  E-value=2.4e-11  Score=116.54  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEP--TTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEP--tsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      +.+..+||+|+-+..+++..+.+|+++++|||  +.++|    ..+.+.+.++.+.|.++|+++|+.  .+...+|++..
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~  147 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKS  147 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhc
Confidence            34557999999999999999999999999995  44444    345666666667789999999984  35678999999


Q ss_pred             ecCCeEEEe
Q psy12625        242 LTEGYCTYQ  250 (612)
Q Consensus       242 L~~G~iv~~  250 (612)
                      +.+|++...
T Consensus       148 ~~~~~i~~~  156 (174)
T PRK13695        148 RPGGRVYEL  156 (174)
T ss_pred             cCCcEEEEE
Confidence            999998765

>PRK15066 inner membrane transport permease; Provisional

Probab=99.21  E-value=6.4e-09  Score=106.20  Aligned_cols=240  Identities=10%  Similarity=0.111  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCC-CC--C-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625        337 LSQFCILLKRTLIKCFRDRFL-TKVRLSLHLIIGSFLGIMYRGI-GD--D-AARVHNNLSLLFFSTMFLMFTALSSMIIT  411 (612)
Q Consensus       337 ~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~~f~~~-~~--~-~~~~~~~~g~lff~~~~~~~~~~~~~~~~  411 (612)
                      |+-++.+.+|.++...||+.. ...-+++.++..+++|.++-.. +.  + ..-..--.|.+-+.....+.+.....   
T Consensus         7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~---   83 (257)
T PRK15066          7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASS---   83 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            667889999999999999854 3334445556666667665321 11  1 11111222444333333333322222   


Q ss_pred             ccchh--hHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhH
Q psy12625        412 YPLEF--EITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVL  489 (612)
Q Consensus       412 f~~er--~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~  489 (612)
                      +..++  ...+|=+.+. .+...+.+++++...-..++..++..++.+...|.+..  ....+....++........|.+
T Consensus        84 i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~  160 (257)
T PRK15066         84 FFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI  160 (257)
T ss_pred             HHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  1111212223 47788999999988767666665555555544466543  2222333333333433445777


Q ss_pred             HHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChh
Q psy12625        490 VGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPA  568 (612)
Q Consensus       490 i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~  568 (612)
                      +|.. .+.+....+.++++.|++..||.+.|.+++|.|++|+.+++|++|..|++=..-++.                  
T Consensus       161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------------------  222 (257)
T PRK15066        161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------------------  222 (257)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC------------------
Confidence            8877 677777788889999999999999999999999999999999999999875432220                  


Q ss_pred             HHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12625        569 KFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYFQIN  608 (612)
Q Consensus       569 ~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~~~~  608 (612)
                              .....|.++++++++.+++..++....|+..+
T Consensus       223 --------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~  254 (257)
T PRK15066        223 --------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG  254 (257)
T ss_pred             --------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                    11234778899999999888888877764433

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.15  E-value=3e-10  Score=106.96  Aligned_cols=157  Identities=22%  Similarity=0.357  Sum_probs=92.9

Q ss_pred             ccccce--EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC---CCCCCCCceeEEEECCEeccch-Hh-h--ccceEEEcc
Q psy12625         44 DILKDI--SGVFVSKELSVILGPSGSGKTKLLDILAGYR---RPKKTETNSGYIEINETRLQDH-RM-L--RKESCYIMQ  114 (612)
Q Consensus        44 ~iL~~v--s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~---~p~~~~~~~G~I~~~g~~~~~~-~~-~--~~~i~yv~Q  114 (612)
                      ++++++  .+++++- ++.|+|.||+||||||..|+-..   ....+...+|++...+.++.+. +. +  +...||...
T Consensus        24 Pa~r~l~~~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlR  102 (233)
T COG3910          24 PAFRHLEERLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLR  102 (233)
T ss_pred             hHHHhhhhhccccCc-eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEe
Confidence            344444  3556554 99999999999999999987543   2211112234443333222111 00 0  112333222


Q ss_pred             CCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeC
Q psy12625        115 DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE  194 (612)
Q Consensus       115 ~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDE  194 (612)
                      -.      |+   ..++.               .++++...-+   ........-|-||-=---+.+. ..+.-+.+|||
T Consensus       103 AE------s~---yn~as---------------~~De~~~e~~---~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDE  154 (233)
T COG3910         103 AE------SF---YNVAS---------------YLDEADGEAN---YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDE  154 (233)
T ss_pred             hh------HH---HHHHH---------------HHHhhhhhcc---cCCcchhhhccchHHHHHHHHH-hccCceEEecC
Confidence            11      11   11111               1122211111   2233344578888654444443 46778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      |-++|.+.-+.+++..|+++++.|..+|+.||.|-
T Consensus       155 PEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         155 PEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             ccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            99999999999999999999999999999999984

>PRK03918 chromosome segregation protein; Provisional

Probab=99.13  E-value=9.1e-11  Score=139.99  Aligned_cols=79  Identities=30%  Similarity=0.433  Sum_probs=69.6

Q ss_pred             cccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625        164 TLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       164 ~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      .+++.||||||+      |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++.  +...||
T Consensus       784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d  861 (880)
T PRK03918        784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAAD  861 (880)
T ss_pred             CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCC
Confidence            456679999999      555666788999999999999999999999999999998777889999999963  578999


Q ss_pred             ceeeecC
Q psy12625        238 YLYVLTE  244 (612)
Q Consensus       238 ~v~~L~~  244 (612)
                      ++++|..
T Consensus       862 ~~~~l~~  868 (880)
T PRK03918        862 YVIRVSL  868 (880)
T ss_pred             eEEEEEe
Confidence            9999973

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.12  E-value=2e-10  Score=120.40  Aligned_cols=143  Identities=19%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH-hhccceEEEccCCCCCCCCCHHHH
Q psy12625         49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-MLRKESCYIMQDNLLQELLTVEES  127 (612)
Q Consensus        49 vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~  127 (612)
                      +++.+++|+.++|.||+|||||||+++|++..++     ..|.+.++...  +.. ..+..+.++.+...-         
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-----~~~iv~ied~~--El~~~~~~~~~l~~~~~~~---------  200 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-----DERIITIEDTR--EIFLPHPNYVHLFYSKGGQ---------  200 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-----cccEEEEcCcc--ccCCCCCCEEEEEecCCCC---------
Confidence            4567889999999999999999999999999875     35666664321  110 001222222211000         


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625        128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i  207 (612)
                                                              + +++-...-.+..+|-.+|+++++|||.+       .+.
T Consensus       201 ----------------------------------------~-~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~  232 (308)
T TIGR02788       201 ----------------------------------------G-LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEA  232 (308)
T ss_pred             ----------------------------------------C-cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence                                                    0 0001111234556778999999999996       345


Q ss_pred             HHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      .+.++.+...+.+++.|+|..+  ..+..||+..|..|++...|.+.+..
T Consensus       233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence            6777776644446799999986  46779999999999988888777654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.12  E-value=4.8e-11  Score=143.65  Aligned_cols=82  Identities=24%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             cCcccCCCChhhhhHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q psy12625        162 KNTLTKHLSGGQKKRLSIALELLS--------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL  233 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia~aL~~--------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~  233 (612)
                      .++.+++|||||++|++||++|+.        +|++||+||||++||+.+...+++.|..+++.|++|+++||... ..-
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~ 1021 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKE 1021 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHH
Confidence            457789999999999999999996        89999999999999999999999999999989999999999753 334


Q ss_pred             hcccceeeecC
Q psy12625        234 NMADYLYVLTE  244 (612)
Q Consensus       234 ~~~D~v~~L~~  244 (612)
                      ++-.+|.|-..
T Consensus      1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246       1022 RIPVQIKVKKI 1032 (1047)
T ss_pred             hccceEEEEEC
Confidence            45555555543

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.11  E-value=8.7e-10  Score=129.51  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hcccceeeecCCeEEEecC
Q psy12625        184 LSNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL---------NMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       184 ~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~G~  252 (612)
                      ..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.         +.||..++|.+|++...|.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~  727 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT  727 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence            5799999999999999 7999999999999999889999999999864 43         6899999999998766553

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.10  E-value=2.6e-10  Score=106.66  Aligned_cols=63  Identities=25%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTT----------GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      ..+.++.++...+++...+|+++++|||++          +.|......+.+++....+.+.++|+++|.+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~  139 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG  139 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence            344556667888899999999999999994          555565667666666665679999999998764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.06  E-value=7.5e-10  Score=132.31  Aligned_cols=94  Identities=26%  Similarity=0.296  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCcc----------------ccCcccCCCChhhhhHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        148 KVDSIADSLSIST----------------CKNTLTKHLSGGQKKRLSI------ALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       148 ~v~~~l~~lgL~~----------------~~~~~~~~LSgGerqRv~i------a~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                      ...+++..+|+..                .....+..||||||+|++|      |++++.+|++++|||||+|||+....
T Consensus       765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~  844 (895)
T PRK01156        765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT  844 (895)
T ss_pred             HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence            4566777788742                1123567899999999975      58999999999999999999999999


Q ss_pred             HHHHHHHHHHh-C-C-CEEEEEecCCchHHHhcccceeeec
Q psy12625        206 NLVKLLRDMAH-Q-G-TMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       206 ~i~~~l~~l~~-~-g-~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      .+.+.++...+ . | .+||++||++.  ....||+++.+.
T Consensus       845 ~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii~~~  883 (895)
T PRK01156        845 NLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAYEVK  883 (895)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEEEEE
Confidence            99999986543 3 3 48999999975  458999999997

>TIGR00606 rad50 rad50

Probab=99.03  E-value=4.1e-10  Score=138.90  Aligned_cols=72  Identities=31%  Similarity=0.376  Sum_probs=63.2

Q ss_pred             cccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHH
Q psy12625        164 TLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-----QGTMIICTLHQPSASL  232 (612)
Q Consensus       164 ~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~i  232 (612)
                      ...+.|||||||      |++||++++.+|++++|||||+|||+.+...+.+.|..+..     .|.+||++||++. .+
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~ 1273 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FV 1273 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HH
Confidence            345789999999      99999999999999999999999999999999999988742     4789999999975 56


Q ss_pred             Hhcc
Q psy12625        233 LNMA  236 (612)
Q Consensus       233 ~~~~  236 (612)
                      ..+|
T Consensus      1274 ~~~~ 1277 (1311)
T TIGR00606      1274 ELLG 1277 (1311)
T ss_pred             HHHh
Confidence            6554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.98  E-value=1.6e-09  Score=116.94  Aligned_cols=155  Identities=15%  Similarity=0.093  Sum_probs=108.5

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++     ..|.|.+.|+..                      .
T Consensus       144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-----~~gvI~~iGerg----------------------~  195 (432)
T PRK06793        144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-----DINVISLVGERG----------------------R  195 (432)
T ss_pred             CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-----CeEEEEeCCCCc----------------------c
Confidence            4577775 99999999999999999999999999998875     467776666541                      2


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHh-------hCCCEEEEeC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLDE  194 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~-------~~p~illlDE  194 (612)
                      +|.|.+...                     +..-|+.+. .=....+-|.|+|+|++.+.+.+       .++-++++||
T Consensus       196 ev~e~~~~~---------------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs  254 (432)
T PRK06793        196 EVKDFIRKE---------------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS  254 (432)
T ss_pred             cHHHHHHHH---------------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            444443211                     111111110 01233578999999999999888       7899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||+..|+.  .++-..+.+....|.+..+.+|.+  .+   ++|.-...+|.+...+..
T Consensus       255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv  306 (432)
T PRK06793        255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV  306 (432)
T ss_pred             hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence            99999996  555556666654588888877742  33   444444577887666544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.94  E-value=1.1e-09  Score=134.47  Aligned_cols=79  Identities=32%  Similarity=0.431  Sum_probs=68.9

Q ss_pred             cCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625        162 KNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      .++.+..||||||+|++||++++    .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++.  ....||
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d 1159 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVAD 1159 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhh
Confidence            35667789999999999999985    67799999999999999999999999999875 478999999976  357899


Q ss_pred             ceeeec
Q psy12625        238 YLYVLT  243 (612)
Q Consensus       238 ~v~~L~  243 (612)
                      +++.+.
T Consensus      1160 ~~~~~~ 1165 (1179)
T TIGR02168      1160 QLYGVT 1165 (1179)
T ss_pred             hHeeee
Confidence            997664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.93  E-value=5.1e-10  Score=120.55  Aligned_cols=52  Identities=25%  Similarity=0.359  Sum_probs=45.7

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccc
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQD  101 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~  101 (612)
                      +.+|++||+++++||+++|+|||||||||||+  +|+..|     .+| +|.++|+++..
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~-----~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF-----SEGYEFFLDATHSFS   71 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC-----CCCCEEEECCEECCC
Confidence            46899999999999999999999999999999  677665     345 89999998754

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.92  E-value=1.3e-07  Score=96.34  Aligned_cols=231  Identities=17%  Similarity=0.200  Sum_probs=149.7

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHHhcCCC------CC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHhh
Q psy12625        351 CFRDRFLTKVRLSLHLIIGSFLGIMYRGIG------DD--AARVHNNLSLLFFSTMFLMFTALSSMIITYPLEFEITRRE  422 (612)
Q Consensus       351 ~~Rd~~~~~~r~~~~i~~al~~G~~f~~~~------~~--~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE  422 (612)
                      ....+.....+....+..+...+..+.+.+      ..  ......-.|.+.+..++.........+.. ..+...+.|=
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~  123 (286)
T COG0842          45 LVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTLERL  123 (286)
T ss_pred             eeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcHHHH
Confidence            333444444444445555555555554442      11  11122223444444444433332222211 1244444454


Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHHh-c-CChhHHH
Q psy12625        423 HFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVGM-I-LDVKNGV  500 (612)
Q Consensus       423 ~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~~-~-~~~~~a~  500 (612)
                      ..+..-+ ..+++++.+...-...+...+...+..+..| ......+..+...+.+..+...++|.++++ . .+.+.+.
T Consensus       124 ~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~  201 (286)
T COG0842         124 LVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCAS  201 (286)
T ss_pred             HhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4455432 5677777777777776666666666667777 334455666677777778888888887773 3 4567788


Q ss_pred             HHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhcCCCCccccCCCccccCChhHHHHHcCCCCCC
Q psy12625        501 IFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEEYCHFKSPAKFLDALDMKNGD  580 (612)
Q Consensus       501 ~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~~C~~~~g~~~L~~~~~~~~~  580 (612)
                      .++.++..++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-....+...                         ...
T Consensus       202 ~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------------~~~  256 (286)
T COG0842         202 AVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------------NDG  256 (286)
T ss_pred             HHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------------------------hhh
Confidence            8888999999999999999999999999999999999999998765443110                         112


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625        581 YSYDLFFLIVSYILVKIASYLVLYFQINR  609 (612)
Q Consensus       581 ~~~~~~il~~~~~~~~~~~~~~L~~~~~~  609 (612)
                      .|.++++++++.+++.+++...++++.++
T Consensus       257 ~~~~~~~l~~~~~v~~~~~~~~~~~~~~~  285 (286)
T COG0842         257 IWISLLILLLFAVVFLLLGLLLLRRRRKL  285 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            78889999999999999999888877654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.91  E-value=2.4e-08  Score=100.42  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=56.8

Q ss_pred             CCChhhhhHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH------HHhcc
Q psy12625        168 HLSGGQKKRLSIALELLS--NPSIIFLDEPTTG---LDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS------LLNMA  236 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~--~p~illlDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~------i~~~~  236 (612)
                      ..|.++++.+.....++.  +|+++++||||+.   .|.....++++.++.++++|.|+++++|+....      +..++
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~  179 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC  179 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence            456788999999999998  9999999999964   555555566666777777889999999986521      34455


Q ss_pred             cceeeec
Q psy12625        237 DYLYVLT  243 (612)
Q Consensus       237 D~v~~L~  243 (612)
                      |-++.|+
T Consensus       180 DgvI~L~  186 (234)
T PRK06067        180 DVYLKLR  186 (234)
T ss_pred             EEEEEEE
Confidence            5555554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.90  E-value=9e-09  Score=100.97  Aligned_cols=57  Identities=23%  Similarity=0.321  Sum_probs=43.6

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +++++|..+|+++++|||.   |......+    .+.+..|..++.|+|.++.  .+..||++.|.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence            4788899999999999996   55543333    3445678999999999863  57789987774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.84  E-value=9.5e-09  Score=112.52  Aligned_cols=151  Identities=16%  Similarity=0.203  Sum_probs=96.6

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      .++++.+..+++|++++++||||+||||++..|++....     ..|.               +.++++.+|.   ...+
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-----~~G~---------------~kV~LI~~Dt---~Rig  300 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-----RHGA---------------SKVALLTTDS---YRIG  300 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-----hcCC---------------CeEEEEeCCc---cchh
Confidence            356677777889999999999999999999999997642     1121               2478888876   3378


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH-HHHHHHHhhCC-----CEEEEeCCCC
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR-LSIALELLSNP-----SIIFLDEPTT  197 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~~~p-----~illlDEPts  197 (612)
                      +.|+|.+.+.+..   .+........+...+..++.+.....+.+...+++.. +.-..+++.++     .+|+||.++.
T Consensus       301 A~EQLr~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~  377 (484)
T PRK06995        301 GHEQLRIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH  377 (484)
T ss_pred             HHHHHHHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence            9999998766532   1111112233444556677776666777755454432 33444455554     6899999988


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy12625        198 GLDYLNATNLVKLLRDMAHQGTMIICTLH  226 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H  226 (612)
                      +      ..+.+.++.....+.+=++.|+
T Consensus       378 ~------~~l~~i~~~f~~~~~~g~IlTK  400 (484)
T PRK06995        378 G------DTLNEVVQAYRGPGLAGCILTK  400 (484)
T ss_pred             H------HHHHHHHHHhccCCCCEEEEeC
Confidence            7      3344555555554554334444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.83  E-value=4.6e-09  Score=128.96  Aligned_cols=77  Identities=22%  Similarity=0.265  Sum_probs=67.7

Q ss_pred             ccCCCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        165 LTKHLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      .+..||||||++++||++++.    +|++++||||+++||+.++..+.++|+++++ +.++|++||++.  ....||+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence            456799999999999999985    6799999999999999999999999999865 467899999974  568999998


Q ss_pred             eecC
Q psy12625        241 VLTE  244 (612)
Q Consensus       241 ~L~~  244 (612)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            7753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.83  E-value=1.4e-08  Score=102.53  Aligned_cols=136  Identities=22%  Similarity=0.322  Sum_probs=86.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL  134 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l  134 (612)
                      |++..|+||+|+|||||+--++--..       +|.=...+ ...    .-...+-|+.=++                  
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va-------~G~~~~g~~~~~----~~~~~Vlyi~~Ed------------------   51 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMA-------LGKNLFGGGLKV----TEPGRVVYLSAED------------------   51 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHh-------cCccccCCcccc----CCCceEEEEECCC------------------
Confidence            67889999999999999877653221       12111110 110    0122344544221                  


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHH----------------HHhhCCCEEEEeCCCC-
Q psy12625        135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL----------------ELLSNPSIIFLDEPTT-  197 (612)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~----------------aL~~~p~illlDEPts-  197 (612)
                            +..+..+++..+...+++.+..++...  .+|+.|++.+++                ....+|+++++| |++ 
T Consensus        52 ------~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~  122 (239)
T cd01125          52 ------PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS  122 (239)
T ss_pred             ------CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence                  122334556666666665544443332  256666666554                335799999999 765 


Q ss_pred             -----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy12625        198 -----GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS  229 (612)
Q Consensus       198 -----gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~  229 (612)
                           .+|+.....+++.|+++++ .|.+|++++|...
T Consensus       123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence                 4799999999999999987 5999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.80  E-value=8.9e-09  Score=122.98  Aligned_cols=78  Identities=33%  Similarity=0.474  Sum_probs=67.2

Q ss_pred             cCCCChhhhh------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHH
Q psy12625        166 TKHLSGGQKK------RLSIALELLSN-----P-SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGT-MIICTLHQPSASL  232 (612)
Q Consensus       166 ~~~LSgGerq------Rv~ia~aL~~~-----p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~i  232 (612)
                      +..||||||+      |+++|++++.+     | +++++||||++||+.....+.+.|+.+.+.|. +||++||++.  .
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~  856 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L  856 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence            4579999999      99999998864     3 67999999999999999999999999987654 8999999975  3


Q ss_pred             HhcccceeeecCC
Q psy12625        233 LNMADYLYVLTEG  245 (612)
Q Consensus       233 ~~~~D~v~~L~~G  245 (612)
                      ...+|+++.|...
T Consensus       857 ~~~ad~~~~~~~~  869 (880)
T PRK02224        857 VGAADDLVRVEKD  869 (880)
T ss_pred             HHhcCeeEEeecC
Confidence            5789999999643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.80  E-value=1.6e-07  Score=84.51  Aligned_cols=119  Identities=29%  Similarity=0.317  Sum_probs=78.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL  134 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l  134 (612)
                      ++..+.|.||+|+||||+++.|++.....    ..+-+.++.............                          
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVLDQLL--------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCC----CCCEEEECCEEccccCHHHHH--------------------------
Confidence            46789999999999999999999987631    113455554432111000000                          


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q psy12625        135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK-----  209 (612)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~-----  209 (612)
                                              ....+.......+++..+..++++--.+|.++++||+..-.+.........     
T Consensus        51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~  106 (148)
T smart00382       51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR  106 (148)
T ss_pred             ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence                                    011112223566777777777777777799999999999999998887765     


Q ss_pred             -HHHHHHhCCCEEEEEecC
Q psy12625        210 -LLRDMAHQGTMIICTLHQ  227 (612)
Q Consensus       210 -~l~~l~~~g~tvi~~~H~  227 (612)
                       ........+..+|+++|.
T Consensus       107 ~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382      107 LLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             HHHHHHhcCCCEEEEEeCC
Confidence             222333457788888883

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.79  E-value=6.5e-08  Score=90.79  Aligned_cols=131  Identities=11%  Similarity=0.025  Sum_probs=95.9

Q ss_pred             ccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHH--HHHHHHHHHHHHHHHHHHHHhH
Q psy12625        412 YPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELD--RFAMFLLICVFLTLYSQGMGVL  489 (612)
Q Consensus       412 f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~~~g~~  489 (612)
                      ...|+..+.|-+..-. +...|+++|++...-..+++.++..++.++ .|.+....  ..+.++++..+.......++..
T Consensus        14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~   91 (152)
T TIGR01248        14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA   91 (152)
T ss_pred             HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457778888888774 899999999999999998888877777754 38776632  2233333334444455555555


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHH
Q psy12625        490 VGMILDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGIL  544 (612)
Q Consensus       490 i~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~  544 (612)
                      ++...+.+.+.....++.+|++..||.+.|.+++|+|++|+.+++|++|+.|++=
T Consensus        92 ~a~~~~~~~~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R  146 (152)
T TIGR01248        92 MALRKEGRFAMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA  146 (152)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence            5544333334434566788889999999999999999999999999999999874

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.75  E-value=4.4e-10  Score=124.83  Aligned_cols=168  Identities=15%  Similarity=0.172  Sum_probs=106.1

Q ss_pred             cccce-EEEEeCCeEEEEECCCCCcHHHHHHHH--HCCCCCCCCCCceeEEEECCEecc-chHhhccceEEEccCCCCCC
Q psy12625         45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDIL--AGYRRPKKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l--~g~~~p~~~~~~~G~I~~~g~~~~-~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      -|+.+ .+=+.+|..+.|.||+|||||||..-+  .|..++     -+.-+++...+-. +.....+..|+-.++...-.
T Consensus         9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-----ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g   83 (484)
T TIGR02655         9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-----DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG   83 (484)
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC
Confidence            45665 567999999999999999999998755  354331     1234555443311 11112234555443211000


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH--HHHhhCCCEEEEeCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA--LELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia--~aL~~~p~illlDEPtsg  198 (612)
                            ++.+   +.    ...   ....+.+++.+++++..++....+|+|++|||.|+  .++..+|+..        
T Consensus        84 ------~l~~---~~----~~~---~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~--------  139 (484)
T TIGR02655        84 ------KLFI---LD----ASP---DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV--------  139 (484)
T ss_pred             ------ceEE---Ee----cCc---hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence                  0000   00    000   01112345667777778888889999999999999  6666665433        


Q ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhcccceeeec
Q psy12625        199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS-------L-LNMADYLYVLT  243 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~  243 (612)
                        ...+..+.++++.+++.|.|+|+++|+....       + ..++|.|+.|+
T Consensus       140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence              5678889999999988999999999986421       1 45789999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.65  E-value=9.2e-09  Score=103.05  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             cccce-EEEEeCCeEEEEECCCCCcHHHHHHHHH--CCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCCC
Q psy12625         45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDILA--GYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l~--g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~~  120 (612)
                      -|+++ .+=+++|++++|.||+|+|||||...++  +..+      -++.+++......+. ....+..++.+|+....+
T Consensus         8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~   81 (229)
T TIGR03881         8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD------GDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEG   81 (229)
T ss_pred             hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc------CCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcC
Confidence            45553 5679999999999999999999987654  4332      134466665331111 111234555555322212


Q ss_pred             CCCHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC
Q psy12625        121 LLTVEESLTVAA--HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       121 ~lTv~e~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg  198 (612)
                      .+.+.|.+....  .... ...+.++...++.++++..|+..                   .+.++-.+..+++|||+  
T Consensus        82 ~l~i~d~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-------------------~~vvIDsl~~l~~~~~~--  139 (229)
T TIGR03881        82 KLVIIDALMKEKEDEWSL-RELSIEELLNKVIEAKKYLGYGH-------------------ARLVIDSMSAFWLDKPA--  139 (229)
T ss_pred             CEEEEEcccccccccccc-ccCCHHHHHHHHHHHHHhhccCc-------------------eEEEecCchhhhccChH--
Confidence            222221110000  0000 01222333334444444433211                   12233334444455553  


Q ss_pred             CCHHHHHHHHHHHHH-HHhCCCEEEEEecCCch-------HHHhcccceeeec
Q psy12625        199 LDYLNATNLVKLLRD-MAHQGTMIICTLHQPSA-------SLLNMADYLYVLT  243 (612)
Q Consensus       199 LD~~~~~~i~~~l~~-l~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~  243 (612)
                          ...++...|++ +++.|.|+++++|....       .+..++|.|+.|+
T Consensus       140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence                23444444444 45579999999996421       2345678888876

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.63  E-value=3.3e-08  Score=96.79  Aligned_cols=113  Identities=17%  Similarity=0.092  Sum_probs=69.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG  137 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~  137 (612)
                      +++|.||||||||||.+.|++...       .|.+.                 ++++|+.. ..++..+...... ... 
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~-------~~~~~-----------------v~~~D~~~-~~~~~~~~~~~~~-~~~-   53 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG-------NPKVV-----------------IISQDSYY-KDLSHEELEERKN-NNY-   53 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC-------CCCeE-----------------EEEecccc-cccccccHHHhcc-CCC-
Confidence            579999999999999999999763       12222                 22222211 1122222211110 000 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                       ..+.....+...+.++.+...+..+.+..+.|.|++++..+   .+.+|+++++|+|..+.++
T Consensus        54 -~~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          54 -DHPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             -CCCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence             01111112344566676766666677788899999877665   5788999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.62  E-value=3.1e-07  Score=100.13  Aligned_cols=178  Identities=16%  Similarity=0.184  Sum_probs=107.5

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH----------hhccceEE
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR----------MLRKESCY  111 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~----------~~~~~i~y  111 (612)
                      +..+++++ +.+.+||.++|+|+||+|||||+++|+|..++     ..|.+...|..-.+..          .+++.+.+
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-----~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv  223 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-----DVNVIALIGERGREVREFIEHDLGEEGLKRSVVV  223 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----CEEEEEEEeecchHHHHHHHHHhcccccceEEEE
Confidence            35689999 99999999999999999999999999999775     4566666554322211          12233444


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEE
Q psy12625        112 IMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIF  191 (612)
Q Consensus       112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~ill  191 (612)
                      +.+.+.     ++.+-..- +..          .-. +.|.+...|-+-.  -...+++     |.+=|.--+.    +.
T Consensus       224 ~~~~d~-----~p~~r~~~-~~~----------a~t-~AE~frd~G~~Vl--l~~DslT-----r~A~A~REis----l~  275 (440)
T TIGR01026       224 VATSDQ-----SPLLRLKG-AYV----------ATA-IAEYFRDQGKDVL--LLMDSVT-----RFAMAQREIG----LA  275 (440)
T ss_pred             EECCCC-----CHHHHHHH-HHH----------HHH-HHHHHHHCCCCEE--EEEeChH-----HHHHHHHHHH----Hh
Confidence            444332     11111110 000          001 1122222232100  0011222     1111110010    23


Q ss_pred             EeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        192 LDEP--TTGLDYLNATNLVKLLRDMAHQGT-------MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       192 lDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +.||  +.|+|+.....+-+++.+....+.       ||++..||..+   .++|++.-+.||+++.....++.
T Consensus       276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence            4575  559999999999999999877667       88889998753   57899999999999998876644

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR00611 recf recF protein

Probab=98.62  E-value=5.2e-08  Score=104.36  Aligned_cols=58  Identities=29%  Similarity=0.411  Sum_probs=54.3

Q ss_pred             CChhhhhHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        169 LSGGQKKRLSIALELLS---------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~---------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      +|.||+|++.||..|+.         +|+|++||||+++||+..+..+++.|.+.   |.+|++|+|++.
T Consensus       276 ~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       276 ASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            89999999999999999         99999999999999999999999999764   679999999864

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.60  E-value=5.7e-08  Score=105.11  Aligned_cols=90  Identities=14%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--H------hhccceEEEc
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--R------MLRKESCYIM  113 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~------~~~~~i~yv~  113 (612)
                      ...+++++ +++.+||.++|+||||+|||||+++|+|..++.  ...-|.|-.+|.++.+.  +      ..|..+++++
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d--v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~  218 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD--VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP  218 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC--eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence            35699999 999999999999999999999999999988752  11236666666554321  1      1245799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHh
Q psy12625        114 QDNLLQELLTVEESLTVAAHL  134 (612)
Q Consensus       114 Q~~~l~~~lTv~e~l~~~~~l  134 (612)
                      |++..+..+++.|++...+..
T Consensus       219 ~d~s~~~rl~a~e~a~~iAEy  239 (434)
T PRK07196        219 ADESPLMRIKATELCHAIATY  239 (434)
T ss_pred             CCCChhhhHHHHHHHHHHHHH
Confidence            999999999999998876654

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.59  E-value=7.9e-07  Score=105.25  Aligned_cols=70  Identities=19%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--cccceeeecCCeEEE
Q psy12625        179 IALELLSNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN--MADYLYVLTEGYCTY  249 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv~  249 (612)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+  .++.++-..+.++..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~L  752 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIFL  752 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCcceec
Confidence            677888999999999999999 7999999999999999889999999999874 444  345555555555554

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.56  E-value=3.6e-07  Score=97.31  Aligned_cols=125  Identities=22%  Similarity=0.315  Sum_probs=78.4

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA  132 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~  132 (612)
                      .+++.++.|.||+||||||+|+++.+.+.+    ...|.|..-+.++. . ......+.+.|..                
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~----~~~~~i~tiEdp~E-~-~~~~~~~~i~q~e----------------  176 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINK----NAAGHIITIEDPIE-Y-VHRNKRSLINQRE----------------  176 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCc----CCCCEEEEEcCChh-h-hccCccceEEccc----------------
Confidence            356889999999999999999999986652    12456655443311 0 0000111111100                


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy12625        133 HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR  212 (612)
Q Consensus       133 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~  212 (612)
                                             .|..        .    .--.-+++++|-.+|+++++||+.   |+.++...++   
T Consensus       177 -----------------------vg~~--------~----~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---  215 (343)
T TIGR01420       177 -----------------------VGLD--------T----LSFANALRAALREDPDVILIGEMR---DLETVELALT---  215 (343)
T ss_pred             -----------------------cCCC--------C----cCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence                                   0000        0    001223567788899999999997   8888765444   


Q ss_pred             HHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        213 DMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       213 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                       .+..|..|+.|+|..+.  ....+|++-|-
T Consensus       216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~~  243 (343)
T TIGR01420       216 -AAETGHLVFGTLHTNSA--AQTIERIIDVF  243 (343)
T ss_pred             -HHHcCCcEEEEEcCCCH--HHHHHHHHHhc
Confidence             35679999999999753  56778887653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.55  E-value=1.3e-07  Score=91.82  Aligned_cols=84  Identities=20%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCC--CCCCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN--LLQELL  122 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~--~l~~~l  122 (612)
                      ..+=+.+.+++|+.++|+||||||||||+++|+|+.+|     ..|.|.+++..-.. ...+..++++.|.+  ...+..
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-----~~~~i~ied~~E~~-~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-----DERIITIEDTAELQ-LPHPNWVRLVTRPGNVEGSGEV   87 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-----CCCEEEECCccccC-CCCCCEEEEEEecCCCCCCCcc
Confidence            44555667899999999999999999999999999875     46889887743111 11234566666544  345668


Q ss_pred             CHHHHHHHHHHh
Q psy12625        123 TVEESLTVAAHL  134 (612)
Q Consensus       123 Tv~e~l~~~~~l  134 (612)
                      |+.+.+..+.+.
T Consensus        88 ~~~~~l~~~lR~   99 (186)
T cd01130          88 TMADLLRSALRM   99 (186)
T ss_pred             CHHHHHHHHhcc
Confidence            888888776543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.51  E-value=2.3e-07  Score=111.02  Aligned_cols=79  Identities=32%  Similarity=0.414  Sum_probs=70.4

Q ss_pred             cccCCCChhhhhHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625        164 TLTKHLSGGQKKRLSIALELL------SN--PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM  235 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~------~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~  235 (612)
                      +.++.|||||+=.++||.+|+      .+  -++|||||||..||+.+...+++.|..+...+.+|+++||++  ++.+.
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence            466789999999988888775      45  699999999999999999999999999998899999999995  56789


Q ss_pred             ccceeeecC
Q psy12625        236 ADYLYVLTE  244 (612)
Q Consensus       236 ~D~v~~L~~  244 (612)
                      +|.++.+..
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            999998865

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.48  E-value=2.7e-07  Score=100.01  Aligned_cols=85  Identities=14%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC-
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE-   96 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g-   96 (612)
                      +..++.++++..+.         ....+++.++ .+.+||.++|+|||||||||||++|+++.+|     ..|.|.+.| 
T Consensus       137 p~~~~r~~v~~~l~---------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-----d~gvv~liGe  201 (450)
T PRK06002        137 PPAMTRARVETGLR---------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-----DTVVIALVGE  201 (450)
T ss_pred             CCCeEeecceEEcC---------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----Ceeeeeeccc
Confidence            44577788887763         2356888886 8999999999999999999999999999875     578888854 


Q ss_pred             --Eeccch------HhhccceEEEccCCC
Q psy12625         97 --TRLQDH------RMLRKESCYIMQDNL  117 (612)
Q Consensus        97 --~~~~~~------~~~~~~i~yv~Q~~~  117 (612)
                        +++.+.      ...++.+++|+|.+.
T Consensus       202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        202 RGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence              444321      113467999999775

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.44  E-value=5.1e-07  Score=106.57  Aligned_cols=138  Identities=19%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ..|-+|+++. +.+.++.|.|||++||||+||.++-..-                       +.+.-+|||-+..-++  
T Consensus       595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------------lAq~G~~VPa~~a~i~--  648 (854)
T PRK05399        595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------------LAQIGSFVPAESARIG--  648 (854)
T ss_pred             ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------------HHhcCCceeccceEec--
Confidence            3466788877 6778999999999999999999864311                       0011123332211100  


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC---CC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP---TT  197 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP---ts  197 (612)
                       +                        ++.+..++|-   .|....++|-=+.....++..|  +++++++++|||   |+
T Consensus       649 -~------------------------~d~I~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs  700 (854)
T PRK05399        649 -I------------------------VDRIFTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS  700 (854)
T ss_pred             -c------------------------cCeeeeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence             0                        0111111121   2233345666555555555554  459999999999   99


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccc
Q psy12625        198 GLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~  238 (612)
                      .+|..+  .....++.+.+. |.+++++||..  ++.+++|+
T Consensus       701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~  738 (854)
T PRK05399        701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK  738 (854)
T ss_pred             cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence            999444  455566667665 58899999994  56777775

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.43  E-value=1.6e-07  Score=90.31  Aligned_cols=67  Identities=18%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhc-cceEEEccCCCCCCCCCHHHHHHH
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLR-KESCYIMQDNLLQELLTVEESLTV  130 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~  130 (612)
                      +||+++|+|+||||||||+++|+|+..+         +.++|.++......+ ...++.+|+...++..++.++..+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA---------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC---------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence            6999999999999999999999998763         477887654332222 235666776555555555555544

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.39  E-value=4.3e-07  Score=112.08  Aligned_cols=63  Identities=25%  Similarity=0.319  Sum_probs=54.7

Q ss_pred             CcccCCCChhhhhHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        163 NTLTKHLSGGQKKRLS----IALE--------LLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       163 ~~~~~~LSgGerqRv~----ia~a--------L~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      ++..++||||||||++    +|++        +..+|++++|||||+|||+.++..+++++.++   |.++|+++|..
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            4456789999999996    5644        55899999999999999999999999999887   68899999874

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PLN03210 Resistant to P

Probab=98.38  E-value=7.8e-07  Score=109.05  Aligned_cols=164  Identities=18%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHH
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE  126 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e  126 (612)
                      .=+++..+++++++|.|++|+|||||++.+++....    ...|.+++++..+.....     .+-.++...       .
T Consensus       198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~~v~~~~~-----~~~~~~~~~-------~  261 (1153)
T PLN03210        198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRAFISKSME-----IYSSANPDD-------Y  261 (1153)
T ss_pred             HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeeccccccchh-----hcccccccc-------c
Confidence            334667788999999999999999999999887652    357899887632211100     010110000       0


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN  206 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~  206 (612)
                      +...            ...++.+.++++..++.      +..+ ++.|+|      |..++-+++||+-    |..   .
T Consensus       262 ~~~~------------~l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~  309 (1153)
T PLN03210        262 NMKL------------HLQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---D  309 (1153)
T ss_pred             chhH------------HHHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence            0000            01123344455544442      2222 556665      3456667889984    433   3


Q ss_pred             HHHHHHHHH---hCCCEEEEEecCCchHHHhc-ccceeeecCCeEEEecCccChhhHHhhcCC
Q psy12625        207 LVKLLRDMA---HQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCTYQGTVPGLVPYLSDFGY  265 (612)
Q Consensus       207 i~~~l~~l~---~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~  265 (612)
                      .++.++...   ..|.+||+|||+... +... +|+++.+..      -+.+++.+.|....+
T Consensus       310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af  365 (1153)
T PLN03210        310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF  365 (1153)
T ss_pred             HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence            344444432   358899999999642 2222 566554431      123456666655433

syringae 6; Provisional

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.38  E-value=6.1e-06  Score=97.48  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=44.3

Q ss_pred             HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        182 ELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       182 aL~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      .+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3457899999999999999 889999999999999889999999999863

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.30  E-value=1.1e-05  Score=82.88  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=32.6

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+.|+++.+-+++|+++.|.||+|+|||||+..++..
T Consensus        17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~   53 (271)
T cd01122          17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD   53 (271)
T ss_pred             cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568888889999999999999999999999877654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.24  E-value=1.7e-05  Score=76.80  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCCc-cccCcccCCCChhhhhHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625        148 KVDSIADSLSIS-TCKNTLTKHLSGGQKKRLS--IALELLS-NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ  217 (612)
Q Consensus       148 ~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~--ia~aL~~-~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~  217 (612)
                      .+.+.++..++. -...+++..+|+||+|++.  +++.+-. ++++    .|+|++|..+..++.+.|.++.++
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            445566666664 2345567779999999987  5555443 3343    399999999999999999988764

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.21  E-value=1.4e-05  Score=94.62  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        183 LLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       183 L~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      +-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~  679 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA  679 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            345899999999999999 78899999999999888999999999986

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.20  E-value=3.5e-06  Score=91.54  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC---Eeccch--Hhhc---cceEEE--
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDH--RMLR---KESCYI--  112 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g---~~~~~~--~~~~---~~i~yv--  112 (612)
                      ..+++++ +.+.+||.++|+|+||+|||||+++|+|..++    ...|.|.+.|   +++.+.  +.++   ...+++  
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvv  226 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVV  226 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEE
Confidence            4588888 99999999999999999999999999998742    1346777755   443221  1111   234555  


Q ss_pred             ---ccCCC--CCCCCCHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHcCCc-----cccCcccCCCC
Q psy12625        113 ---MQDNL--LQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSLSIS-----TCKNTLTKHLS  170 (612)
Q Consensus       113 ---~Q~~~--l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~-----~~~~~~~~~LS  170 (612)
                         +|++.  +.+.+ +...+.-..+.+ +.. ....+...++.+++++++|.     ...+.++..+|
T Consensus       227 ats~q~p~~rlnp~~-va~~IAE~~r~~-g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS  293 (442)
T PRK06315        227 STSDQSSQLRLNAAY-VGTAIAEYFRDQ-GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS  293 (442)
T ss_pred             eCCCCCHHHHhhHHH-HHHHHHHHHHHc-CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence               78763  22323 333332222222 111 12345677888899999984     33444454443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.19  E-value=7e-06  Score=74.46  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-----QGTMIICTLHQPS  229 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~  229 (612)
                      ++..........++.++++||.-.. ++.....+.+.+.....     .+..+|+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556666677788999999998765 66667788888887753     4678888888653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.18  E-value=3e-06  Score=72.23  Aligned_cols=51  Identities=39%  Similarity=0.537  Sum_probs=39.7

Q ss_pred             CcccCCCChhhh-hHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625        163 NTLTKHLSGGQK-KRLSIALELL------S------NPSIIFLDEPTTGLDYLNATNLVKLLRD  213 (612)
Q Consensus       163 ~~~~~~LSgGer-qRv~ia~aL~------~------~p~illlDEPtsgLD~~~~~~i~~~l~~  213 (612)
                      .+..+.+||||| ..+.++.+++      .      .|++++||||+++||+.....+++.|++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            456788999999 5555544432      2      3799999999999999999999999875

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.18  E-value=2.1e-06  Score=67.39  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=30.2

Q ss_pred             ccceEEEEeC-CeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         46 LKDISGVFVS-KELSVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        46 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      +++.++.+.+ |+++.|.|||||||||||++|.=.+-+
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4556777875 579999999999999999999876553

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.14  E-value=8.9e-06  Score=92.94  Aligned_cols=114  Identities=22%  Similarity=0.322  Sum_probs=76.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCC---CceeEEEECCEeccc-hHhhccceEEEccCCCCCCCCCHHHHHHH
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTE---TNSGYIEINETRLQD-HRMLRKESCYIMQDNLLQELLTVEESLTV  130 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~---~~~G~I~~~g~~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~  130 (612)
                      ..+.++|+||||+|||||++++.+..++..+.   ...+-+.+||..+.. ....                    ++-.+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll  233 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL  233 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence            34679999999999999999999876532111   123446666654210 0000                    01011


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy12625        131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL  210 (612)
Q Consensus       131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~  210 (612)
                      .       .. .+...+.+.+.++..|+.+..+..+..+|||                +|++|| +..||+..+..+.+.
T Consensus       234 g-------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~  288 (615)
T TIGR02903       234 G-------SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKV  288 (615)
T ss_pred             C-------Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence            0       01 1112234556688889988888889999999                999999 799999999998888


Q ss_pred             HHH
Q psy12625        211 LRD  213 (612)
Q Consensus       211 l~~  213 (612)
                      |++
T Consensus       289 Le~  291 (615)
T TIGR02903       289 LED  291 (615)
T ss_pred             Hhh
Confidence            865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.12  E-value=0.0012  Score=67.50  Aligned_cols=205  Identities=15%  Similarity=0.159  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy12625        336 CLSQFCILLKRTLIKCFRDRFL-TKVRLSLHLIIGSFLGIMYRGIGDD---AARVHNNLSLLFFSTMFLMFTALSSMIIT  411 (612)
Q Consensus       336 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~~f~~~~~~---~~~~~~~~g~lff~~~~~~~~~~~~~~~~  411 (612)
                      .++-.+.|.+|.++..+|+..+ ..--++..+++.++.+.+|-.+-..   .--..--.|.+.+.....   +.......
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~---~i~~~~~s   92 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSE---AISEGAGS   92 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH---HHHhHHHH
Confidence            4566788999999998887642 2223444444555555444322111   111222233332222211   22233344


Q ss_pred             ccchhhHHHhhccCCCcchHHHHHHHHHHHHHHHHHhHHhhhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy12625        412 YPLEFEITRREHFNRWFSLKAYYLATMVADIPVQLLCTVIYCVTVYFISKQPLELDRFAMFLLICVFLTLYSQGMGVLVG  491 (612)
Q Consensus       412 f~~er~v~~rE~~~~~Y~~~~y~la~~~~~~p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~  491 (612)
                      +.+...+++|-+    ..+..+.+++++.++-...+..++....+-|.-+.+  ...+..+...+.+..+.+.++|.++|
T Consensus        93 ~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a  166 (263)
T COG1682          93 VVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA  166 (263)
T ss_pred             hhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556665543    378899999999998777766666555555544443  34556666667777888888899998


Q ss_pred             hc-CChhHHHHHHHHHHHHHHHhheeecCCCCCcccchhhhccChHHHHHHHHHHHHhc
Q psy12625        492 MI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDSPDCFKFLFKLSFLKHSLEGILLSVYG  549 (612)
Q Consensus       492 ~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~Wl~yiSp~~y~~e~l~~n~f~  549 (612)
                      ++ .....-..+.+.++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=...++
T Consensus       167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~  225 (263)
T COG1682         167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG  225 (263)
T ss_pred             hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence            88 44433333345566668888999999999999999999999999999987666554

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.09  E-value=3.6e-06  Score=81.60  Aligned_cols=52  Identities=23%  Similarity=0.300  Sum_probs=36.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQD  115 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~  115 (612)
                      |++++|+||||||||||++.|++...+        .+.+++..+...  ...+..+++++|+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT--------QLLVAHRYITRPASAGSENHIALSEQE   55 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC--------eEEEcCEECCCccchhHHhheeEcHHH
Confidence            789999999999999999999997652        466777654322  1223445555553

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.08  E-value=1.6e-06  Score=80.95  Aligned_cols=64  Identities=16%  Similarity=0.115  Sum_probs=44.0

Q ss_pred             HHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy12625        147 SKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALEL-----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDM  214 (612)
Q Consensus       147 ~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL-----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l  214 (612)
                      ..+.+.++..+..- ...++...++++++++.....+.     ...|+++    |+|++|.....++.+.|.++
T Consensus       100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            34555666665431 23455667899998887766653     3345655    99999999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00152 dephospho-CoA kinase

Probab=98.05  E-value=4.5e-06  Score=81.06  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-HHHhcccceeeecCC
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA-SLLNMADYLYVLTEG  245 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~-~i~~~~D~v~~L~~G  245 (612)
                      |+-+|..||..+..+|+.+..+|  +.+||.....+.+.+++..++|.+|++.+|.... .....||.+++++.+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            88999999999999999988887  8899999999999998887667899999998632 256788988777644

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.04  E-value=3.4e-06  Score=90.17  Aligned_cols=70  Identities=21%  Similarity=0.356  Sum_probs=55.1

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++.+.-.+++|+.++|+|+||+|||||+|.|+|..++     .+|+|.+++.... ....++.+++++|+..++.+
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~-----~~G~i~~~~~~g~-~tt~~~~l~~l~~~~~l~Dt  254 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ-----KTGAVREDDSKGR-HTTTHRELHPLPSGGLLIDT  254 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc-----ceeeEEECCCCCc-chhhhccEEEecCCCeecCC
Confidence            4555556789999999999999999999999998875     6899999875422 22345679999998877754

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.03  E-value=0.00013  Score=73.53  Aligned_cols=52  Identities=17%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCCchHHHhccc
Q psy12625        184 LSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAH-QGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       184 ~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~-~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      +++..++++||+..|=++.....+... ++.+.+ .+..++++||...  +.+..+
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~  173 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE  173 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence            456789999999999999988877654 456666 4888999999964  444443

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.02  E-value=0.001  Score=67.27  Aligned_cols=218  Identities=15%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy12625        341 CILLKRTLIKCFRDRFLTKVRLSLHLIIGSFLGIMYRGI----GDDAARVHNNLSLLFFSTMFLMFTALSSMIITYPLEF  416 (612)
Q Consensus       341 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~~----~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~f~~er  416 (612)
                      +.+.||.++...|.|..+..-.+..++.|+.. ..+.+.    ..+..+...   +  |......+.-+.+.+     --
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~---~--f~~~~~~~~~~~p~l-----~~   70 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP---F--FSLAPWVFLFLIPAI-----TM   70 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH---H--HHHHHHHHHHHHHHH-----HH
Confidence            46789999999999998887777777666442 222110    111111111   1  111111111111111     12


Q ss_pred             hHHHhhccCCCc--------chHHHHHHHHHHHHHHHHHhHH---hhhhhhhcccc--CCccHHHHHHHHHHHHHHHHHH
Q psy12625        417 EITRREHFNRWF--------SLKAYYLATMVADIPVQLLCTV---IYCVTVYFISK--QPLELDRFAMFLLICVFLTLYS  483 (612)
Q Consensus       417 ~v~~rE~~~~~Y--------~~~~y~la~~~~~~p~~~~~~~---~f~~i~Y~~~g--l~~~~~~f~~f~~~~~l~~~~~  483 (612)
                      ..+.+||++|..        +...+.++|.++-.-..++..+   ++....++...  -..+.+.++...+..++...+.
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY  150 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence            456677777754        5678899999988655443322   12222222211  1234555555555556677788


Q ss_pred             HHHHhHHHhc-CChhHHHHHHHHHHHHHHHhheeecCCCCC--cccchhhhccChHHHHHHHHHHHHhcCCCCccccCCC
Q psy12625        484 QGMGVLVGMI-LDVKNGVIFGPLTLLPWTIFSGYFVLQRDS--PDCFKFLFKLSFLKHSLEGILLSVYGYDRDQLKCYEE  560 (612)
Q Consensus       484 ~~~g~~i~~~-~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~Wl~yiSp~~y~~e~l~~n~f~~~~~~~~C~~~  560 (612)
                      .++|.++|++ .+...|..++-..  .+.++.|+-. ..++  |++.+|+.|+||..|-.+.. .      + .+     
T Consensus       151 ~aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~------g-~i-----  214 (240)
T TIGR03518       151 TAIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R------G-VI-----  214 (240)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c------C-cc-----
Confidence            8999999999 5555554433222  2223233211 2334  88899999999976653322 1      0 11     


Q ss_pred             ccccCChhHHHHHcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12625        561 YCHFKSPAKFLDALDMKNGDYSYDLFFLIVSYILVKIASYLVLYF  605 (612)
Q Consensus       561 ~C~~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~L~~  605 (612)
                                          .|.|+...+.+.+++..++...++.
T Consensus       215 --------------------~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       215 --------------------DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             --------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                                0456777777777777777666543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR00416 sms DNA repair protein RadA

Probab=98.02  E-value=1.5e-05  Score=87.86  Aligned_cols=62  Identities=19%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCch-------HHHhcccceeeecCCe
Q psy12625        185 SNPSIIFLDEPTTGL----D-----YLNATNLVKLLRDMAH-QGTMIICTLHQPSA-------SLLNMADYLYVLTEGY  246 (612)
Q Consensus       185 ~~p~illlDEPtsgL----D-----~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~  246 (612)
                      .+|+++++|.-++=.    +     ....++++..|.++++ .|.|++++.|...+       .+.+++|.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            478999999876421    1     2334566666777765 79999999996432       1467899999997654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK08149 ATP synthase SpaL; Validated

Probab=98.01  E-value=8.7e-06  Score=88.18  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-H-h----hccceEEEccC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-R-M----LRKESCYIMQD  115 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~-~----~~~~i~yv~Q~  115 (612)
                      +..+++++ +.+.+||.++|+|+||+|||||+++|++..++.  ...-|.|-.+|+++.+. + .    ..+++++|+..
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~d--v~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD--VFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCC--eEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            35689999 999999999999999999999999999987752  12349999999886432 1 1    23567888765


Q ss_pred             CC
Q psy12625        116 NL  117 (612)
Q Consensus       116 ~~  117 (612)
                      ..
T Consensus       215 sd  216 (428)
T PRK08149        215 SD  216 (428)
T ss_pred             CC
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	612
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		6e-16
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		8e-15
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		8e-15
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-14
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		4e-14
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		1e-13
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		1e-13
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-13
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-13
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-13
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-13
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		4e-13
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-13
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		7e-13
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		9e-13
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-12
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-12
1g29_1	372	Malk Length = 372		2e-12
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		5e-12
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		6e-12
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		7e-12
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		9e-12
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-11
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-11
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		2e-11
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		2e-11
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-11
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		4e-11
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		5e-11
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-11
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-11
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		7e-11
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		8e-11
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		8e-11
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		9e-11
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-10
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		2e-10
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		3e-10
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		4e-10
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		4e-10
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-09
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		1e-09
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-09
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-09
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		4e-09
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-09
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		5e-09
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		6e-09
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		9e-09
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		1e-08
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-08
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		2e-08
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-08
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-07
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		2e-07
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		2e-07
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-07
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-07
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		2e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		3e-07
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-07
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		4e-07
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-06
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-06
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		4e-06
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		6e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-05
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		2e-05
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		2e-05
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		3e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		3e-05
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		3e-05
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		5e-05
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		1e-04
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		1e-04
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		4e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		4e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		4e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		5e-04
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		5e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		5e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		6e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		7e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		8e-04

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 9/231 (3%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E   +LGPSGSGK+ LL  +AG  +P      SG I  +E  + +     +    + Q+ 
Sbjct: 30  EFMALLGPSGSGKSTLLYTIAGIYKP-----TSGKIYFDEKDVTELPPKDRNVGLVFQNW 84
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            L   +TV +++     L+   +  R+  + KV  +A  L I    N     LSGGQ++R
Sbjct: 85  ALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQR 141
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           ++IA  L+  P ++ LDEP + LD L    +   L+ +  +  +    +    A  L MA
Sbjct: 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA 201
Query: 237 DYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRM 287
           D + V+ EG     GT P  V Y   + +      NP    +E  +E  ++
Sbjct: 202 DRIAVIREGEILQVGT-PDEVYYKPKYKFVGGFLGNPPMNFVEAKVEDGKL 251

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40  IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           + SKDI  DI  G FV     V +GPSG GK+ LL ++AG          SG + I E R
Sbjct: 17  VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           + D     +    + Q   L   L+V E+++    LKL     ++    +V+ +A+ L +
Sbjct: 67  MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
           +   +   K LSGGQ++R++I   L++ PS+  LDEP + LD  L     +++ R     
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           G TMI  T  Q  A  + +AD + VL  G     G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40  IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           + SKDI  DI  G FV     V +GPSG GK+ LL ++AG          SG + I E R
Sbjct: 17  VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           + D     +    + Q   L   L+V E+++    LKL     ++    +V+ +A+ L +
Sbjct: 67  MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
           +   +   K LSGGQ++R++I   L++ PS+  LDEP + LD  L     +++ R     
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           G TMI  T  Q  A  + +AD + VL  G     G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 40  IKSKDILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           + SKDI  DI  G FV     V +GPSG GK+ LL ++AG          SG + I E R
Sbjct: 17  VVSKDINLDIHEGEFV-----VFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKR 66
Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           + D     +    + Q   L   L+V E+++    LKL     ++    +V+ +A+ L +
Sbjct: 67  MNDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQL 123
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD-YLNATNLVKLLRDMAHQ 217
           +   +   K LSGGQ++R++I   L++ PS+  LD+P + LD  L     +++ R     
Sbjct: 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRL 183
Query: 218 G-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           G TMI  T  Q  A  + +AD + VL  G     G
Sbjct: 184 GRTMIYVTHDQVEA--MTLADKIVVLDAGRVAQVG 216

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E+  +LGPSGSGKT +L ++AG  RP K     G + I   R+ D    ++    + Q+ 
Sbjct: 42  EMVGLLGPSGSGKTTILRLIAGLERPTK-----GDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            L + +TV ++++     K   +  +   +++V  +   + + +  N     LSGGQ++R
Sbjct: 97  ALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR 153
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ------GTMIICTLHQPSA 230
           +++A  L   P ++  DEP   +D    T + + LR    Q       T +  T  Q  A
Sbjct: 154 VALARALAPRPQVLLFDEPFAAID----TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209
Query: 231 SLLNMADYLYVLTEGYCTYQGT 252
             L +AD + VL EG     GT
Sbjct: 210 --LEVADRVLVLHEGNVEQFGT 229

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 34  DTHSYSIKSKDI-LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           +  S S K K+  L ++S    S E  VILGP+G+GKT  L+++AG+  P     +SG I
Sbjct: 3   EIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----DSGRI 57
Query: 93  EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR---KAKESKV 149
            ++   + D    + +  ++ Q+  L   + V+++L     +K      R    A++ K+
Sbjct: 58  LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
           + + D       +N LT  LSGG+++R+++A  L++NP I+ LDEP + LD     N  +
Sbjct: 118 EHLLD-------RNPLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           +L  +  +  + +  +         MAD + V+ +G     G
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 20/227 (8%)
Query: 34  DTHSY--SIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRRPKKTETN 88
           D H    S  S ++LK I+      E+ V++GPSGSGK+   + L++L  +        +
Sbjct: 5   DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--------D 56
Query: 89  SGYIEINETRLQ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
            G I I+   L+    +   +R+E   + Q   L   +TV  ++T+A  +K+  ++ R+ 
Sbjct: 57  EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKV-RKWPREK 114
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
            E+K   + D + +    +     LSGGQ +R++IA  L   P I+  DEPT+ LD    
Sbjct: 115 AEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174
Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
             ++ +++ +A++G  ++   H+   +   + D +  +  GY   +G
Sbjct: 175 GEVLSVMKQLANEGMTMVVVTHEMGFA-REVGDRVLFMDGGYIIEEG 220

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 20/234 (8%)
Query: 27  SYSALYYDTHSY--SIKSKDILKDISGVFVSKELSVILGPSGSGKT---KLLDILAGYRR 81
           S+     D H    S  S ++LK I+      E+ V++GPSGSGK+   + L++L  +  
Sbjct: 19  SHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-- 76
Query: 82  PKKTETNSGYIEINETRLQ----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG 137
                 + G I I+   L+    +   +R+E   + Q   L   +TV  ++T+A  +K+ 
Sbjct: 77  ------DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKV- 128
Query: 138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
            ++ R+  E+K   + D + +    +     LSGGQ +R++IA  L   P I+  DEPT+
Sbjct: 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 198 GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
            LD      ++ +++ +A++G  ++   H+   +   + D +  +  GY   +G
Sbjct: 189 ALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA-REVGDRVLFMDGGYIIEEG 241

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR-- 103
           LK I+      E++ ILG +G GK+ L     G  +P     +SG I  +   +   R  
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILFDNKPIDYSRKG 78
Query: 104 -MLRKESCYIM---QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS 159
            M  +ES  I+    DN L      ++    A ++KL     RK    +VD+      I 
Sbjct: 79  IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGIE 134
Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-G 218
             K+  T  LS GQKKR++IA  L+  P ++ LDEPT GLD +  + ++KLL +M  + G
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 219 TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             II   H      L   D ++V+ EG    QG 
Sbjct: 195 ITIIIATHDIDIVPL-YCDNVFVMKEGRVILQGN 227

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 13/209 (6%)
Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +LKD++  F + ++ V++G +GSGKT LL ILAG          +G I ++ +   D  +
Sbjct: 26  VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL------AAAGEIFLDGSP-ADPFL 78
Query: 105 LRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
           LRK   Y+ Q+   Q +  TVEE +  +  + +G   S   K  ++  + + + +S    
Sbjct: 79  LRKNVGYVFQNPSSQIIGATVEEDVAFSLEI-MGLDESEMRK--RIKKVLELVGLSGLAA 135
Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
               +LSGGQK+RL+IA  L  +   + LDEP + LD  +   + ++L  + ++G  II 
Sbjct: 136 ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIIL 195
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             H+     L+  D++  ++ G   + G+
Sbjct: 196 VTHE--LEYLDDMDFILHISNGTIDFCGS 222

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTE---------TNSGYIEINETRLQDHRMLRKESCY 111
           ILGPSG+GKT  + I+AG   P   E         +N   I   E R         +   
Sbjct: 36  ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR---------KIGM 86
Query: 112 IMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
           + Q   L   LT  E++     ++K+  +  RK    +V+ +A  L I    N   + LS
Sbjct: 87  VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK----RVEEVAKILDIHHVLNHFPRELS 142
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
           GGQ++R+++A  L+ +PS++ LDEP + LD     +   L++++  + G  ++   H P 
Sbjct: 143 GGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP- 201
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
           A +  +AD + VL +G     G
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVG 223

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 17/235 (7%)
Query: 26  ISYSALYYDTH-SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           ++  AL   +H  Y ++ + ++ D+S    S E+  I+GP+G+GK+ LL +L GY  P  
Sbjct: 6   VTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
            E +     +N  +    + L +    + Q + L    +V E + +      G    R+A
Sbjct: 66  GECHLLGQNLNSWQ---PKALARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQDRQA 121
Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLS------NPSIIFLDEPTTG 198
            + +V +  D L+++     +   LSGG+++R+ +A  L         P  +FLDEPT+ 
Sbjct: 122 LQ-QVMAQTDCLALAQRDYRV---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177
Query: 199 LDYLNATNLVKLLRDMAHQGTMII-CTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           LD  +  + ++LLR +  Q  + + C LH  + + L  AD + +L +G     GT
Sbjct: 178 LDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL-YADRIMLLAQGKLVACGT 231

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 34/258 (13%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E   +LGPSG GKT  L +LAG  +P      SG I  ++  + D     +E   + Q+ 
Sbjct: 30  EFVALLGPSGCGKTTTLLMLAGIYKP-----TSGEIYFDDVLVNDIPPKYREVGMVFQNY 84
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            L   +TV E++      +   + S+   E +V  IA  L I    +     LSGGQ++R
Sbjct: 85  ALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR 141
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR-DMAH-QGTMIICTLH--QPSASL 232
           +++A  L+  P ++  DEP + LD     NL  ++R ++ H Q  + I +++     A  
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLD----ANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197
Query: 233 LNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRMFEPCT 292
           + MA  + V  +G     GT         D  Y  P N   A ++            P T
Sbjct: 198 MTMASRIAVFNQGKLVQYGT--------PDEVYDSPKNMFVASFI----------GNPPT 239
Query: 293 NGKFFNANSSHNTKTVLK 310
           N     + S  N +T+LK
Sbjct: 240 NFLRDFSVSVENKQTILK 257

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 36  HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
           H  +   K  L+++S V    E  ++ G +GSGK+ LL I+AG   P      SG +  +
Sbjct: 13  HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYD 67
Query: 96  ETRLQDHRMLRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
             R + + + R         +D    E +  E +  V       N Y  +     V    
Sbjct: 68  GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK------NFYPDRDPVPLVKKAM 121
Query: 154 D--SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           +   L   + K+ +   LSGG+K+R++IA  ++  P I+ LDEP  GLD    T+L++++
Sbjct: 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
                 G  +I   H    +++N  D + VL +G   + GT
Sbjct: 182 EKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 221

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 36  HSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN 95
           H  +   K  L+++S V    E  ++ G +GSGK+ LL I+AG   P      SG +  +
Sbjct: 15  HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYD 69
Query: 96  ETRLQDHRMLRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
             R + + + R         +D    E +  E +  V       N Y  +     V    
Sbjct: 70  GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK------NFYPDRDPVPLVKKAM 123
Query: 154 D--SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           +   L   + K+ +   LSGG+K+R++IA  ++  P I+ LDEP  GLD    T+L++++
Sbjct: 124 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
                 G  +I   H    +++N  D + VL +G   + GT
Sbjct: 184 EKWKTLGKTVILISHD-IETVINHVDRVVVLEKGKKVFDGT 223

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 25/202 (12%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTE---------TNSGYIEINETRLQDHRMLRKESCY 111
           ILGPSG+GKT  + I+AG   P   E         +N   I   E R         +   
Sbjct: 36  ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR---------KIGM 86
Query: 112 IMQDNLLQELLTVEESLTVA-AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
           + Q   L   LT  E++     ++K+  +  RK    +V+ +A  L I    N   + LS
Sbjct: 87  VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK----RVEEVAKILDIHHVLNHFPRELS 142
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
           G Q++R+++A  L+ +PS++ LDEP + LD     +   L++++  + G  ++   H P 
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP- 201
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
           A +  +AD + VL +G     G
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVG 223

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 13/220 (5%)
Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
            Y+     ILKDI+      E    +G SG GK+ L++++     P+  +  SG I I+ 
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI-----PRFYDVTSGQILIDG 402
Query: 97  TRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
             ++D     LR +   + QDN+L    TV+E++ +        +    AK +       
Sbjct: 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIM 461
Query: 155 SL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
           +L     T        LSGGQK+RLSIA   L+NP I+ LDE T+ LD L + ++++   
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD-LESESIIQEAL 520
Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           D+  +    +   H+ S   +  AD + V+  G+    GT
Sbjct: 521 DVLSKDRTTLIVAHRLST--ITHADKIVVIENGHIVETGT 558

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM------LRKESC 110
           E  ++LGPSG GKT  L ++AG   P +     G I I +  + D           ++  
Sbjct: 30  EFMILLGPSGCGKTTTLRMIAGLEEPSR-----GQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 111 YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLS 170
            + Q   L   +TV ++  +A  LKL  +  R+  + +V  +A+ L ++   N   + LS
Sbjct: 85  MVFQSYALYPHMTVYDN--IAFPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141
Query: 171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPS 229
           GGQ++R+++   ++  P +  +DEP + LD      +   L+ +  Q G   I   H   
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-Q 200
Query: 230 ASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQCPSNYNPADYV 277
              + M D + V+  G     G+         D  Y  P+N   A ++
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGS--------PDEVYDKPANTFVAGFI 240

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 18  HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA 77
           H ++ F++I +         Y   S  IL +I+      E+  I+G SGSGK+ L  ++ 
Sbjct: 1   HHDITFRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 52
Query: 78  GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------E 126
            +  P+  +     I+ ++  L D   LR++   ++QDN+L     ++           E
Sbjct: 53  RFYIPENGQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 109
Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
            +  AA L   + +  + +E            +T        LSGGQ++R++IA  L++N
Sbjct: 110 KVIYAAKLAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNN 159
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
           P I+  DE T+ LDY +   +++ +  +  +G  +I   H+   S +  AD + V+ +G 
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGK 216
Query: 247 CTYQG 251
              QG
Sbjct: 217 IVEQG 221

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 35  THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           T +Y +  + I  LK+++      E   I+GPSGSGK+ +L+I+    +P + E     I
Sbjct: 8   TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67
Query: 93  EINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
           + N+    +   +R++   ++ Q   L  LLT  E++ +    K     S + +  +   
Sbjct: 68  KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-- 125
Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
             + L ++  +     H    LSGGQ++R++IA  L +NP II  D+PT  LD      +
Sbjct: 126 -LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 208 VKLLRDMAHQ-GTMIICTLH 226
           ++LL+ +  + G  ++   H
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH 204

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 35  THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           T +Y +  + I  LK+++      E   I+GPSGSGK+ +L+I+    +P + E     I
Sbjct: 8   TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67
Query: 93  EINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
           + N+    +   +R++   ++ Q   L  LLT  E++ +    K     S + +  +   
Sbjct: 68  KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-- 125
Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
             + L ++  +     H    LSGGQ++R++IA  L +NP II  D+PT  LD      +
Sbjct: 126 -LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 208 VKLLRDMAHQ-GTMIICTLH 226
           ++LL+ +  + G  ++   H
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH 204

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 18  HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA 77
           H ++ F++I +         Y   S  IL +I+      E+  I+G +GSGK+ L  ++ 
Sbjct: 1   HHDITFRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ 52
Query: 78  GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------E 126
            +  P+  +     I+ ++  L D   LR++   ++QDN+L     ++           E
Sbjct: 53  RFYIPENGQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 109
Query: 127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
            +  AA L   + +  + +E            +T        LSGGQ++R++IA  L++N
Sbjct: 110 KVIYAAKLAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNN 159
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
           P I+  DE T+ LDY +   +++ +  +  +G  +I   H+   S +  AD + V+ +G 
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGK 216
Query: 247 CTYQG 251
              QG
Sbjct: 217 IVEQG 221

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           DI++  + +    Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P+ 
Sbjct: 1   DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
            +     I+ ++  L D   LR++   ++QDN+L     ++           E +  AA 
Sbjct: 58  GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 114
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
           L   + +  + +E            +T        LSGGQ++R++IA  L++NP I+  D
Sbjct: 115 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           E T+ LDY +   +++ +  +  +G  +I   H+   S +  AD + V+ +G    QG
Sbjct: 165 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 219

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           DI++  + +    Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P+ 
Sbjct: 7   DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
            +     I+ ++  L D   LR++   ++QDN+L     ++           E +  AA 
Sbjct: 64  GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
           L   + +  + +E            +T        LSGGQ++R++IA  L++NP I+  D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           E T+ LDY +   +++ +  +  +G  +I   H+   S +  AD + V+ +G    QG
Sbjct: 171 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           DI++  + +    Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P+ 
Sbjct: 1   DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
            +     I+ ++  L D   LR++   ++QDN+L     ++           E +  AA 
Sbjct: 58  GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 114
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
           L   + +  + +E            +T        LSGGQ++R++IA  L++NP I+  D
Sbjct: 115 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           E T+ LDY +   +++ +  +    T+II        S +  AD + V+ +G    QG
Sbjct: 165 EATSALDYESEHVIMRNMHKICKGRTVIIIA---ARLSTVKNADRIIVMEKGKIVEQG 219

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           DI++  + +    Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P+ 
Sbjct: 7   DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
            +     I+ ++  L D   LR++   ++QDN+L     ++           E +  AA 
Sbjct: 64  GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
           L   + +  + +E            +T        LSGGQ++R++IA  L++NP I+  D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           E T+ LDY +   +++ +  +    T+II        S +  AD + V+ +G    QG
Sbjct: 171 EATSALDYESEHVIMRNMHKICKGRTVIIIA---ARLSTVKNADRIIVMEKGKIVEQG 225

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 30/238 (12%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           DI++  + +    Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P+ 
Sbjct: 7   DITFRNIRF---RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE-----------ESLTVAAH 133
            +     I+ ++  L D   LR++   ++QDN+L     ++           E +  AA 
Sbjct: 64  GQV---LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD 193
           L   + +  + +E            +T        LSGGQ++R++IA  L++NP I+  D
Sbjct: 121 LAGAHDFISELREG----------YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 170
Query: 194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           + T+ LDY +   +++ +  +  +G  +I   H+   S +  AD + V+ +G    QG
Sbjct: 171 QATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQG 225

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 26/221 (11%)
Query: 42  SKDILKDISGVFVSKELSVIL--GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
           S+ IL+DIS  F ++  S+I   GPSG GK+ +  +L  + +P   E       I+   L
Sbjct: 14  SEQILRDIS--FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA---------KESKVD 150
           ++    R +  ++ QD+ +    T+ E+LT      L   Y+ +            S V+
Sbjct: 72  EN---WRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVE 123
Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
           ++ D L+    +  +   +SGGQ++RL+IA   L NP I+ LDE T  LD  + + + K 
Sbjct: 124 NMPDQLNTEVGERGV--KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           L D   +G   +   H+   S +  AD +Y + +G  T  G
Sbjct: 182 L-DSLMKGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSG 219

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 50  SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKES 109
            G FVS     I GPSGSGK+  L+I+    +P + E     I+ N+    +   +R++ 
Sbjct: 30  EGEFVS-----IXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 110 C-YIMQDNLLQELLTVEESLTVAAHLK-LGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
             ++ Q   L  LLT  E++ +    K  G     + ++  ++ +  +       N    
Sbjct: 85  IGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPN 144
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLH 226
            LSGGQ++R++IA  L +NP II  DEPT  LD      + +LL+ +  + G  ++   H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 20   NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
            N+L  ++ +S + ++   Y  + S  +L+ +S      +   ++G SG GK+ ++ +L  
Sbjct: 1025 NMLEGNVQFSGVVFN---YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 79   YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN 138
            +  P      S +++  E +  + + LR +   + Q+ +L +  ++ E++    + ++ +
Sbjct: 1082 FYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVS 1137
Query: 139  --QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
              +  R AKE+ +    DSL    +T        LSGGQK+R++IA  L+  P I+ LDE
Sbjct: 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 195  PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             T+ LD   +  +V+   D A +G   I   H+ S   +  AD + V+  G     GT
Sbjct: 1198 ATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGT 1252

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 20   NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG 78
            N+L  ++ +S + ++   Y  + S  +L+ +S      +   ++G SG GK+ ++ +L  
Sbjct: 1025 NMLEGNVQFSGVVFN---YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 79   YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN 138
            +  P      S +++  E +  + + LR +   + Q+ +L +  ++ E++    + ++ +
Sbjct: 1082 FYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVS 1137
Query: 139  --QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
              +  R AKE+ +    DSL    +T        LSGGQK+R++IA  L+  P I+ LDE
Sbjct: 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 195  PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             T+ LD   +  +V+   D A +G   I   H+ S   +  AD + V+  G     GT
Sbjct: 1198 ATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGT 1252

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 40  IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
           I+  +ILK IS      E   I+G SGSGK+ LL IL     P + +      E++ T  
Sbjct: 14  IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73
Query: 100 QDHRMLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           ++  +LR ++  ++ Q + L   LT  E++ V   LK+G +  ++AKE + + +   L +
Sbjct: 74  KELSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMG-KPKKEAKE-RGEYLLSELGL 130
Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG 218
               +     LSGG+++R++IA  L + P ++F DEPT  LD  N   ++ +   +   G
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 219 TMIICTLHQ 227
           T I+   H+
Sbjct: 191 TSIVMVTHE 199

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 34/260 (13%)
Query: 11  LKKSPRKHFN--LLFQDISY-SALYYDTHSYSIKSKD---ILKDISGVFVSKELSVILGP 64
           L++ P+  FN  ++  + S+  AL +    ++  ++    I +D S    S  ++ ++GP
Sbjct: 319 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 65  SGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLLQELL 122
           SGSGK+ +L +L     P      SG I ++  + R  +   LR +   + Q+ +L    
Sbjct: 379 SGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF--- 430
Query: 123 TVEESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSI----STCKNTLTKH----LSG 171
               S ++A ++  G  +  S  A+E  +V  +A++++         NT+       LSG
Sbjct: 431 ----SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
           GQK+R++IA  LL NP I+ LDE T+ LD  N   LV+   D    G  ++   H+   S
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEY-LVQEALDRLMDGRTVLVIAHR--LS 543
Query: 232 LLNMADYLYVLTEGYCTYQG 251
            +  A+ + VL +G  T  G
Sbjct: 544 TIKNANMVAVLDQGKITEYG 563

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 58  LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL 117
           L  +LG +GSGK+ L++++     P++       +++   +L+D   LR     + Q+  
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD---LRGHISAVPQE-- 425
Query: 118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT----------- 166
                TV  S T+  +LK G +      ++  D I ++  I+   + +            
Sbjct: 426 -----TVLFSGTIKENLKWGRE------DATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 167 ---KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
              ++ SGGQK+RLSIA  L+  P ++ LD+ T+ +D +    ++  L+      T  I 
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534
Query: 224 TLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           T   P+A L   AD + VL EG     GT
Sbjct: 535 TQKIPTALL---ADKILVLHEGKVAGFGT 560

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 34/260 (13%)
Query: 11  LKKSPRKHFN--LLFQDISY-SALYYDTHSYSIKSKD---ILKDISGVFVSKELSVILGP 64
           L++ P+  FN  ++  + S+  AL +    ++  ++    I +D S    S  ++ ++GP
Sbjct: 350 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 65  SGSGKTKLLDILAGYRRPKKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQDNLLQELL 122
           SGSGK+ +L +L     P      SG I ++  + R  +   LR +   + Q+ +L    
Sbjct: 410 SGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF--- 461
Query: 123 TVEESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSI----STCKNTLTKH----LSG 171
               S ++A ++  G  +  S  A+E  +V  +A++++         NT+       LSG
Sbjct: 462 ----SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 517
Query: 172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS 231
           GQK+R++IA  LL NP I+ LDE T+ LD  N   LV+   D    G  ++   H    S
Sbjct: 518 GQKQRIAIARALLKNPKILLLDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHH--LS 574
Query: 232 LLNMADYLYVLTEGYCTYQG 251
            +  A+ + VL +G  T  G
Sbjct: 575 TIKNANMVAVLDQGKITEYG 594

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 12/212 (5%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           +KD+S      E  V+LGPSG GKT  L  +AG   P + +    YIE N     +  + 
Sbjct: 22  VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI---YIEDNLVADPEKGVF 78
Query: 106 ----RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC 161
                ++   + Q   L    TV ++  +A  LKL  +  ++  + +V  +A+ L ++  
Sbjct: 79  VPPKERDVAXVFQSYALYPHXTVYDN--IAFPLKL-RKVPKQEIDKRVREVAEXLGLTEL 135
Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTM 220
            N   + LSGGQ++R+++   ++  P +   DEP + LD          L+ +  Q G  
Sbjct: 136 LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVT 195
Query: 221 IICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            I   H          D + V  +G     GT
Sbjct: 196 TIYVTHD-QVEAXTXGDRIAVXNKGELQQVGT 226

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E  V+LGPSG GKT  L ++AG   P +     G  ++     +D  +       + Q  
Sbjct: 38  EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI-----SMVFQSY 92
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            +   +TV E++     +K   ++ +   + +V   A+ L I    N     LSGGQ++R
Sbjct: 93  AVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 149
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           +++A  ++  P ++ +DEP + LD      +   ++ +  +  +    +       + M 
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209
Query: 237 DYLYVLTEGYCTYQGT 252
           D + V+  G     G+
Sbjct: 210 DRIAVMNRGQLLQIGS 225

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDN 116
           E  V+LGPSG GKT  L ++AG   P +     G  ++     +D  +       + Q  
Sbjct: 39  EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI-----SMVFQSY 93
Query: 117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR 176
            +   +TV E++     +K   ++ +   + +V   A+ L I    N     LSGGQ++R
Sbjct: 94  AVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 150
Query: 177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA 236
           +++A  ++  P ++ +DEP + LD      +   ++ +  +  +    +       + M 
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 210
Query: 237 DYLYVLTEGYCTYQGT 252
           D + V+  G     G+
Sbjct: 211 DRIAVMNRGQLLQIGS 226

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 40  IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-NETR 98
           I  K+ILK IS      E+  ++GP+G+GKT  L I++   +P     +SG + +  +  
Sbjct: 25  IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNV 79
Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
           +++   +RK   Y+ ++      +   E L   A       Y+  + E + + +  +  I
Sbjct: 80  VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----YASSSSEIE-EMVERATEI 133
Query: 159 STCKNTLTKHLS---GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
           +     +   +S    G  ++L IA  L+ NP +  LDEPT+GLD LNA  + K+L+  +
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL 256
            +G  I+ + H     +  + D + ++  G     GTV  L
Sbjct: 194 QEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEEL 233

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 29  SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-- 86
           +AL+    S S ++  +L DIS      E+  I+G SG GKT LL  LAG+ +P   E  
Sbjct: 3   AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 87  -------TNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQ 139
                  + +  + + E RL           Y++Q+ +L   LTV  ++       LGN 
Sbjct: 63  LSGKTIFSKNTNLPVRERRL----------GYLVQEGVLFPHLTVYRNIAYG----LGNG 108
Query: 140 YSRKAKE-SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
             R A+E  +++++ +   IS         LSGGQ++R ++A  L  +P +I LDEP + 
Sbjct: 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 199 LD 200
           LD
Sbjct: 169 LD 170

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 46  LKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--Q 100
            K + GV +S    ++++I+GP+GSGK+ L++++            +G+++ +E R+  +
Sbjct: 20  FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFE 67
Query: 101 DHRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKA 144
           +  +  KE   +    +++   T +  + +TV  +L +G               ++  K 
Sbjct: 68  NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127
Query: 145 KE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
           +E   K   I + L +S   +     LSGGQ K + I   L++NP +I +DEP  G+   
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
            A ++   + ++  +G   +   H+    +LN  D+LYV+  G    +G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 46  LKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--Q 100
            K + GV +S    ++++I+GP+GSGK+ L++++            +G+++ +E R+  +
Sbjct: 20  FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFE 67
Query: 101 DHRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKA 144
           +  +  KE   +    +++   T +  + +TV  +L +G               ++  K 
Sbjct: 68  NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE 127
Query: 145 KE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
           +E   K   I + L +S   +     LSGGQ K + I   L++NP +I +DEP  G+   
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
            A ++   + ++  +G   +   H+    +LN  D+LYV+  G    +G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 34/286 (11%)
Query: 15  PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLD 74
           PR H   L +D  +    Y  +++ +    ++K+  G  V      I+GP+G+GK+  + 
Sbjct: 16  PRSHXEQLEEDCVHR---YGVNAFVLYRLPVVKE--GXVVG-----IVGPNGTGKSTAVK 65
Query: 75  ILAGYRRPKKTETNSGYIEI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128
           ILAG   P     N  +  +      NE +    ++   E   +++   + +L+      
Sbjct: 66  ILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-DLIPKAVKG 124
Query: 129 TVAAHLKLGNQYSRKAKES-KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
            V   LK       KA E+ K++ +  +L +        +HLSGG+ +R++IA  LL N 
Sbjct: 125 KVIELLK-------KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC 247
           +  F DEP++ LD     N  + +R ++ +G  ++   H   A L  ++D ++V+     
Sbjct: 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD-LAVLDYLSDIIHVVYGEPG 236
Query: 248 TY------QGTVPGLVPYLSDFGYQCPSNYNPADYVIEVSLEADRM 287
            Y      +GT  G+  +L   GY    N     Y I+ +   +R+
Sbjct: 237 VYGIFSQPKGTRNGINEFLR--GYLKDENVRFRPYEIKFTKTGERV 280

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 109/228 (47%), Gaps = 36/228 (15%)
Query: 47  KDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--QD 101
           K + GV +S    ++++I+GP+GSGK+ L++++            +G+++ +E R+  ++
Sbjct: 21  KALDGVSISVNKGDVTLIIGPNGSGKSTLINVI------------TGFLKADEGRVYFEN 68
Query: 102 HRMLRKESCYIMQDNLLQELLTVE--ESLTVAAHLKLGN--------------QYSRKAK 145
             +  KE   +    +++   T +  + +TV  +L +G               ++  K +
Sbjct: 69  KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEE 128
Query: 146 E--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           E   K   I + L +S   +     LSGGQ K + I   L++NP +I +D+P  G+    
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           A ++   + ++  +G   +   H+    +LN  D+LYV+  G    +G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD---HRMLRKESCYIM 113
           ++  ++G +G+GKT  L  +AG  R +K     G I  N   + +   H + R     + 
Sbjct: 33  QIVTLIGANGAGKTTTLSAIAGLVRAQK-----GKIIFNGQDITNKPAHVINRXGIALVP 87
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTK---HL 169
           +   +   LTV E+L   A       Y+RK KE     +    S+    K  L +    L
Sbjct: 88  EGRRIFPELTVYENLXXGA-------YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140
Query: 170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS 229
           SGG+++ L+I   L S P ++  DEP+ GL  +  + + ++++ +  +GT I+  + Q +
Sbjct: 141 SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQNA 199
Query: 230 ASLLNMADYLYVLTEGYCTYQG 251
              L +A Y YVL  G    +G
Sbjct: 200 LGALKVAHYGYVLETGQIVLEG 221

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 25/235 (10%)
Query: 25  DISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK 84
           +I +  +++   SY  K K +LKDI+      +   ++GP+GSGKT ++++L  +    +
Sbjct: 354 EIEFKNVWF---SYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 85  TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN------ 138
            +     I+I + +      LR     ++QD +L        S TV  +LK GN      
Sbjct: 410 GQILVDGIDIRKIK---RSSLRSSIGIVLQDTILF-------STTVKENLKYGNPGATDE 459
Query: 139 QYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
           +    AK +  D     L     T      + LS GQ++ L+I    L+NP I+ LDE T
Sbjct: 460 EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519
Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           + +D     ++   +  +    T II   H+   + +  AD + VL +G     G
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIA-HR--LNTIKNADLIIVLRDGEIVEMG 571

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 43/264 (16%)
Query: 4   EEAELQDLKKSPRKHFN---LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV 60
           EE E++DL  +    F    + F+++ +S  Y D        ++ L+D+S   +  +   
Sbjct: 34  EETEVKDLPGAGPLRFQKGRIEFENVHFS--YAD-------GRETLQDVSFTVMPGQTLA 84
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLL 118
           ++GPSG+GK+ +L +L  +      + +SG I I+   +       LR     + QD +L
Sbjct: 85  LVGPSGAGKSTILRLLFRF-----YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNTLTK 167
                   + T+A +++ G      A   +V++ A +  I            T       
Sbjct: 140 -------FNDTIADNIRYGRV---TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ 227
            LSGG+K+R++IA  +L  P II LDE T+ LD  N   +   L  +    T I+   H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-HR 248
Query: 228 PSASLLNMADYLYVLTEGYCTYQG 251
            S +++N AD + V+ +G    +G
Sbjct: 249 LS-TVVN-ADQILVIKDGCIVERG 270

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 60  VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ 119
            +LG +G GK+ LLD+L G  RP +     G IE+ ++     +       Y + D +L 
Sbjct: 35  AVLGQNGCGKSTLLDLLLGIHRPIQ-----GKIEVYQSIGFVPQFFSSPFAYSVLDIVL- 88
Query: 120 ELLTVEESLTVAAHLKLGNQYSR-KAKESKVDSIA-DSLSISTCKNTLTKHLSGGQKKRL 177
                   +  + H+   N +++ K+ + +V   A D L+++         LSGGQ++ +
Sbjct: 89  --------MGRSTHI---NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137
Query: 178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS 229
            IA  + S   +I LDEPT+ LD  N   ++ LL D+A  Q   ++ T HQP+
Sbjct: 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 54  VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
           + ++  V+LGP+G+GK+  L+++AG  +P     + G + +N   +      R+   ++ 
Sbjct: 22  MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76
Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
           QD  L   L+V  ++             R  ++ +V  +A+ L I+   +     LSGG+
Sbjct: 77  QDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
           ++R+++A  L+  P ++ LDEP + +D      L++ LR +  +  + I  +        
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 234 NMADYLYVLTEGYCTYQGTV 253
            +AD + V+  G    +G +
Sbjct: 192 MLADEVAVMLNGRIVEKGKL 211

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
           ++G SG+GK+ L+  +    RP +        E+      +    R++   I Q  NLL 
Sbjct: 36  VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
                     VA  L+L N    + K  +V  +   + +    ++   +LSGGQK+R++I
Sbjct: 96  SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 151
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
           A  L SNP ++  DE T+ LD     ++++LL+D+  +  + I  +      +  + D +
Sbjct: 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV 211
Query: 240 YVLTEGYCTYQGTV 253
            V++ G    Q TV
Sbjct: 212 AVISNGELIEQDTV 225

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 44   DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR 103
            +ILK +S      +   ++GPSG GK+ ++ +L    R   T     +I+ +E +  +  
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL---ERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 104  MLRKESCYIMQDNLLQELLTVEE--------SLTVAAHLKLGNQYSRKAKESKVDSIADS 155
              R +   + Q+  L +    E         S+T+A       Q    A+ + + +    
Sbjct: 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA-------QVEEAARLANIHNFIAE 1202
Query: 156  L--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
            L     T        LSGGQK+R++IA  L+ NP I+ LDE T+ LD   +  +V+   D
Sbjct: 1203 LPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALD 1261
Query: 214  MAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
             A +G   I   H+ + +++N AD + V++ G    +GT
Sbjct: 1262 RAREGRTCIVIAHRLN-TVMN-ADCIAVVSNGTIIEKGT 1298

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
           ++G SG+GK+ L+  +    RP +        E+      +    R++   I Q  NLL 
Sbjct: 59  VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS 118
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
                     VA  L+L N    + K  +V  +   + +    ++   +LSGGQK+R++I
Sbjct: 119 SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
           A  L SNP ++  D+ T+ LD     ++++LL+D+  +  + I  +      +  + D +
Sbjct: 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCV 234
Query: 240 YVLTEGYCTYQGTV 253
            V++ G    Q TV
Sbjct: 235 AVISNGELIEQDTV 248

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD-NLLQ 119
           ++G SG+GK+ L+  +    RP +        E+      +    R++   I Q  NLL 
Sbjct: 59  VIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118
Query: 120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI 179
                     VA  L+L N    + K  +V  +   + +    ++   +LSGGQK+R++I
Sbjct: 119 SRTVFG---NVALPLELDNTPKDEVKR-RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174
Query: 180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL 239
           A  L SNP ++  D+ T+ LD     ++++LL+D+  +  + I  +      +  + D +
Sbjct: 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV 234
Query: 240 YVLTEGYCTYQGTV 253
            V++ G    Q TV
Sbjct: 235 AVISNGELIEQDTV 248

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y  K K  L  +S      +   ++G SGSGK+ + ++   +      + +SG I +
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----YDVDSGSICL 402
Query: 95  NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
           +   ++D+++  LR+    + Q+ +L  +  T+  ++  AA      +Y+R+  E     
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND--TIANNIAYAAE----GEYTREQIEQAARQ 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
                 ++++   L     +N  +  LSGGQ++R++IA  LL +  ++ LDE T+ LD  
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTS--LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG 251
           +   +   L ++    T+++   H+ S   +  AD + V+ EG    +G
Sbjct: 515 SERAIQAALDELQKNKTVLVIA-HRLST--IEQADEILVVDEGEIIERG 560

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
           L  +SG   + E+  ++GP+G+GK+ LL  +AG    K +   +G  +E  + T+L  HR
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
                  Y+ Q         V   LT+  H         K +   ++ +A +L++     
Sbjct: 76  ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
             T  LSGG+ +R+ +A  +L     +NP+  ++ LD+P   LD    + L K+L  ++ 
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
           QG  I+ + H
Sbjct: 182 QGLAIVMSSH 191

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
           L  +SG   + E+  ++GP+G+GK+ LL   AG    K +   +G  +E  + T+L  HR
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
                  Y+ Q         V   LT+  H         K +   ++ +A +L++     
Sbjct: 76  ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
             T  LSGG+ +R+ +A  +L     +NP+  ++ LDEP   LD    + L K+L  ++ 
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
           QG  I+ + H
Sbjct: 182 QGLAIVXSSH 191

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
           R+LR     + Q   L   +TV E++  A    LG      A+E  +  +A        +
Sbjct: 89  RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKHDARERALKYLAKVGIDERAQ 147
Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
                HLSGGQ++R+SIA  L   P ++  DEPT+ LD      ++++++ +A +G  ++
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 223 CTLHQPSASLLNMADYLYVLTEGYCTYQG 251
              H+   +  +++ ++  L +G    +G
Sbjct: 208 VVTHEMGFA-RHVSSHVIFLHQGKIEEEG 235

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 27/239 (11%)
Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S++   Y  H     +  +L+ ++      +++ ++GP+GSGK+ +  +L    +P
Sbjct: 19  FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83  KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLL-----QELLTVEESLTVAAHLKL 136
               T    +   E  +Q DH  L  +   + Q+ LL     +E   +   LT    ++ 
Sbjct: 72  ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE--NIAYGLTRTPTME- 124
Query: 137 GNQYSRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
             + +  A ES              T        LSGGQ++ +++A  L+  P ++ LD+
Sbjct: 125 --EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQ 182
Query: 195 PTTGLDYLNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            T+ LD  N   + +LL +     +  ++   HQ   SL   A ++  L EG    QGT
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGT 239

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGY-IEI-NETRLQDHR 103
           L  +SG   + E+  ++GP+G+GK+ LL  +AG    K +   +G  +E  + T+L  HR
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
                  Y+ Q         V   LT+  H         K +   ++ +A +L++     
Sbjct: 76  ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
             T  LSGG+ +R+ +A  +L     +NP+  ++ LD+P   LD    + L K+L  ++ 
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 217 QGTMIICTLH 226
           QG  I+ + H
Sbjct: 182 QGLAIVMSSH 191

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 33  YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           Y  +++ +    I+KD  G+ V      I+GP+G+GKT  + ILAG   P   E N  + 
Sbjct: 101 YGVNAFVLYRLPIVKD--GMVVG-----IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 93  EI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
            +      NE +    R+   E   +++   + +LL       V   LK         K 
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-DLLPKAVKGKVRELLK---------KV 203
Query: 147 SKVDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
            +V    + +     +N L +    LSGG+ +R++IA  LL      F DEP++ LD   
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
              + +++R +A++G  ++   H   A L  ++D ++V+
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVV 301

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 27/219 (12%)
Query: 33  YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           Y  +++ +    I+KD  G+ V      I+GP+G+GKT  + ILAG   P   E N  + 
Sbjct: 87  YGVNAFVLYRLPIVKD--GMVVG-----IVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 139
Query: 93  EI------NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
            +      NE +    R+   E   +++   + +LL       V   LK         K 
Sbjct: 140 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-DLLPKAVKGKVRELLK---------KV 189
Query: 147 SKVDSIADSLSISTCKNTLTK---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
            +V    + +     +N L +    LSGG+ +R++IA  LL      F DEP++ LD   
Sbjct: 190 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 249
Query: 204 ATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL 242
              + +++R +A++G  ++   H   A L  ++D ++V+
Sbjct: 250 RLKVARVIRRLANEGKAVLVVEHD-LAVLDYLSDVIHVV 287

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 15/233 (6%)
Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S++   Y  H     +  +L+ ++      +++ ++GP+GSGK+ +  +L    +P
Sbjct: 19  FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83  KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS 141
               T    +   E  +Q DH  L  +   + Q+ LL      E             + +
Sbjct: 72  ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 142 RKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
             A ES              T        LSGGQ++ +++A  L+  P ++ LD  T+ L
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           D  N   + +LL +     +  +  + Q   SL   A ++  L EG    QGT
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQ-QLSLAERAHHILFLKEGSVCEQGT 239

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI--EINETRLQDHR 103
           L  +SG   + E+  ++GP+G+GK+ LL   AG    K +   +G      + T+L  HR
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
                  Y+ Q         V   LT+  H         K +   ++ +A +L++     
Sbjct: 76  ------AYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLG 121
Query: 164 TLTKHLSGGQKKRLSIALELL-----SNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAH 216
             T  LSGG+ +R+ +A  +L     +NP+  ++ LDEP   LD    + L K+L  +  
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 217 QGTMIICTLH 226
           QG  I+ + H
Sbjct: 182 QGLAIVXSSH 191

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 17/238 (7%)
Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           SI  + ILK ++ V    E+  ++GP+G+GK+ L  ILAG   P+ T      +   E  
Sbjct: 12  SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENI 69
Query: 99  LQ---DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
           L+   D R  RK      Q  +    +T+   L +A   KLG +       +KV    + 
Sbjct: 70  LELSPDERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL 128
Query: 156 LSI--STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
           L    S     L +  SGG+KKR  I   L+  P+   LDE  +GLD      + + +  
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188
Query: 214 MAHQ--GTMIICTLHQPSASLLN--MADYLYVLTEGYCTYQGTVPGLVPYLSDFGYQC 267
           M     G ++I    +    +LN    D ++V+ +G     G  P L   L   GY+ 
Sbjct: 189 MRGPNFGALVITHYQR----ILNYIQPDKVHVMMDGRVVATGG-PELALELEAKGYEW 241

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 41/246 (16%)
Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S++   Y  H     +  +L+ ++      +++ ++GP+GSGK+ +  +L    +P
Sbjct: 19  FQDVSFA---YPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 83  KKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNL-------------LQELLTVEESL 128
               T    +   E  +Q DH  L  +   + Q+ L             L    T+EE  
Sbjct: 72  ----TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT 127
Query: 129 TVAAHLKLGNQYSR--KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
            VA      +  S   +  +++V    + L++             GQ++ +++A  L+  
Sbjct: 128 AVAMESGAHDFISGFPQGYDTEVGETGNQLAV-------------GQRQAVALARALIRK 174
Query: 187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
           P ++ LD  T+ LD  N   + +LL +     +  +  + Q   SL   A ++  L EG 
Sbjct: 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ-QLSLAERAHHILFLKEGS 233
Query: 247 CTYQGT 252
              QGT
Sbjct: 234 VCEQGT 239

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 43/247 (17%)
Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S++   Y      +    +L+ ++      E++ ++GP+GSGK+ +  +L    +P
Sbjct: 17  FQDVSFA---YPNRPDVL----VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 83  KKTETNSGYIEINETRLQ--DHRMLRKESCYI----------MQDNL---LQELLTVEES 127
                  G + ++   L   +HR L ++   +          +Q+N+   L +  T+EE 
Sbjct: 70  -----TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE- 123
Query: 128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP 187
              AA +K G            D+  D              LSGGQ++ +++A  L+  P
Sbjct: 124 -ITAAAVKSGAHSFISGLPQGYDTEVDEAG---------SQLSGGQRQAVALARALIRKP 173
Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--GTMIICTLHQPSASLLNMADYLYVLTEG 245
            ++ LD+ T+ LD  +   + +LL +   +   ++++ T H    SL+  AD++  L  G
Sbjct: 174 CVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH---LSLVEQADHILFLEGG 230
Query: 246 YCTYQGT 252
                GT
Sbjct: 231 AIREGGT 237

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 33  YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           Y     +IK+ D    IS   +   ++ I+G S SGK+ +++ +     P      SG +
Sbjct: 14  YLVREGTIKAAD---GISLDILENSVTAIVGESASGKSTIIEAMTKTL-PPNGRILSGRV 69
Query: 93  -----EINETRLQDHRMLRKESCYIMQDNLLQEL---LTVEESL--TVAAHLKLGNQYS- 141
                ++   R ++ R +R +   ++     Q L   + V E    TV AH   G ++S 
Sbjct: 70  LYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH---GVRWSH 126
Query: 142 ----RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
                KA E K+  +   L+     N+    LSGG K+R+ IAL LL +P ++ LDEPT+
Sbjct: 127 SELIEKASE-KLRMV--RLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 198 GLDYLNATNLVK 209
            LD L   ++++
Sbjct: 184 ALDVLTQAHIIQ 195

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y  +    L++I+    + +   ++G SGSGK+ +  ++  +      + + G I +
Sbjct: 348 TFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----YDIDEGEILM 402
Query: 95  NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
           +   L+++ +  LR +   + Q+ +L  +  TV  ++  A       QYSR+  E     
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND--TVANNIAYART----EQYSREQIEEAARM 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
                 ++ + + L     +N +   LSGGQ++R++IA  LL +  I+ LDE T+ LD  
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +   +   L ++    T ++   H+ S   +  AD + V+ +G    +GT
Sbjct: 515 SERAIQAALDELQKNRTSLVIA-HRLST--IEKADEIVVVEDGVIVERGT 561

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y  +    L++I+    + +   ++G SGSGK+ +  ++  +      + + G+I +
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----YDIDEGHILM 402
Query: 95  NETRLQDHRM--LRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--- 148
           +   L+++ +  LR +   + Q+ +L  +  TV  ++  A       +YSR+  E     
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND--TVANNIAYART----EEYSREQIEEAARM 456
Query: 149 ------VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL 202
                 ++ + + L     +N +   LSGGQ++R++IA  LL +  I+ LDE T+ LD  
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +   +   L ++    T ++   H+ S   +  AD + V+ +G    +GT
Sbjct: 515 SERAIQAALDELQKNRTSLVIA-HRLST--IEQADEIVVVEDGIIVERGT 561

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
           ++S+    +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I   
Sbjct: 45  NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKV 149
                       ++ +IM   + + ++ V        S+  A  L           E  +
Sbjct: 105 -----------SQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDI 142
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
              A+  +I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +
Sbjct: 143 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
             + + MA++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 201 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLRPDF 252

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
           ++S+    +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I   
Sbjct: 45  NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKV 149
                       ++ +IM   + + ++ V        S+  A  L           E  +
Sbjct: 105 -----------SQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDI 142
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
              A+  +I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +
Sbjct: 143 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
             + + MA++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 201 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLRPDF 252

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 63  GPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL 122
           GP+G GKT LL  ++ Y +P K E     + I +        ++ +  ++ ++ ++   +
Sbjct: 42  GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK--------VKGKIFFLPEEIIVPRKI 93
Query: 123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE 182
           +VE+ L   A L     Y  K  ++++    +S+ +   K  L   LS G  +R+ +A  
Sbjct: 94  SVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKLG-ELSQGTIRRVQLAST 147
Query: 183 LLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPS 229
           LL N  I  LD+P   +D  +   ++K +L  +  +G +II +  + S
Sbjct: 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNS--GYIEINETRLQDHRMLRKESCYIMQDNLL 118
           +LG +G GKT +L ILAG   P   + NS  G  E+        +  R +  Y    N  
Sbjct: 30  VLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV-------LKRFRGKEIY----NYF 78
Query: 119 QELLTVE-------ESLTVAAHLKLG--NQYSRKAKE-SKVDSIADSLSISTCKNTLTKH 168
           +EL + E       + +  A+    G  N+   K  E  K D + + L+++   N     
Sbjct: 79  KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC 223
           LSGG  +RL +A  LL    +   D+P++ LD     N+ K +R++     +I+ 
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 27  SYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE 86
           S+  +  D      + K ILK IS      +  ++ G +G+GKT LL+IL  Y       
Sbjct: 18  SHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 87  TN-----SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE--SLTVAAHLKLGNQ 139
            N      G +  +   ++ H          +  +LL++    E    + ++   K    
Sbjct: 78  VNLFGKXPGKVGYSAETVRQH-------IGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 140 YSRKAKE--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT 197
           Y     E  ++   +   +  S        +LS G+K+R+ IA  L   P ++ LDEP  
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAA 190
Query: 198 GLDYL 202
           GLD++
Sbjct: 191 GLDFI 195

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP 228
           LSGG+++R++IA  LL +P I+  DE T+ LD        K + D+    T+II   H+ 
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRL 214
Query: 229 SASLLNMADYLYVLTEGYCTYQGT 252
           S   ++ A+ + +L +G    +GT
Sbjct: 215 ST--ISSAESIILLNKGKIVEKGT 236

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
           +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I           
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 74
Query: 104 MLRKESCYIMQDNLLQELLTVE------ESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
               +  +IM   + + ++ V        S+  A  L           E  +   A+  +
Sbjct: 75  ---SQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL-----------EEDISKFAEKDN 120
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
           I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +  + + MA
Sbjct: 121 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           ++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 179 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 222

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 61  ILGPSGSGKTKLLDILAGYRRPK--KTETNSGYIEI----NETRLQDH--RMLRKESCYI 112
           ++G +G GK+  L ILAG ++P   + +    + EI      + LQ++  +ML  +   I
Sbjct: 108 LVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167
Query: 113 MQ----DNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK- 167
           ++    DN+ + +    + +     L++         E   + +   + I   +N L + 
Sbjct: 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM---------EKSPEDVKRYIKILQLENVLKRD 218
Query: 168 --HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
              LSGG+ +R +I +  +    +   DEP++ LD     N  +++R +      +IC  
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 226 HQPSASLLNMADYL 239
           H      L++ DYL
Sbjct: 279 HD-----LSVLDYL 287

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 36/236 (15%)
Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEIN 95
           ++S+    +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I   
Sbjct: 45  NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKV 149
                       +  +IM         T++E++         ++Y  ++       E  +
Sbjct: 105 -----------SQFSWIMPG-------TIKENIIAGVSY---DEYRYRSVIKACQLEEDI 143
Query: 150 DSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK 209
              A+  +I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +
Sbjct: 144 SKFAEKDNIVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Query: 210 --LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
             + + MA++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 202 SCVCKLMANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 253

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           + LSGGQK +L +A      P +I LDEPT  LD  +   L K L++   +G +II T  
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 949
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
             +    N+ + ++ + +G  T  G
Sbjct: 950 HSAEFTKNLTEEVWAVKDGRXTPSG 974

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           + LSGGQK +L +A      P +I LDEPT  LD  +   L K L++   +G +II T  
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 955
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
             +    N+ + ++ + +G  T  G
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRXTPSG 980

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 31/245 (12%)
Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           S++ K IL+ +S      E+  I+GP+GSGK+ L   LAG    +  E   G +E     
Sbjct: 10  SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKD 66
Query: 99  L-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           L     +D    R      M      E+  V     +   L     Y  +    + D   
Sbjct: 67  LLALSPED----RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD-FQ 121
Query: 154 DSLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
           D +      +   ++ LT+ +    SGG+KKR  I    +  P +  LDE  +GLD ++A
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDA 180
Query: 205 TNL----VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYL 260
             +    V  LRD     + II T +Q     +   DY++VL +G     G    LV  L
Sbjct: 181 LKVVADGVNSLRDGKR--SFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFT-LVKQL 236
Query: 261 SDFGY 265
            + GY
Sbjct: 237 EEQGY 241

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 31/245 (12%)
Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           S++ K IL+ +S      E+  I+GP+GSGK+ L   LAG    +  E   G +E     
Sbjct: 29  SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTVEFKGKD 85
Query: 99  L-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIA 153
           L     +D    R      M      E+  V     +   L     Y  +    + D   
Sbjct: 86  LLALSPED----RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFD-FQ 140
Query: 154 DSLS-----ISTCKNTLTKHL----SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA 204
           D +      +   ++ LT+ +    SGG+KKR  I    +  P +  LDE  +GLD ++A
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDA 199
Query: 205 TNL----VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYL 260
             +    V  LRD     + II T +Q     +   DY++VL +G     G    LV  L
Sbjct: 200 LKVVADGVNSLRDGKR--SFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFT-LVKQL 255
Query: 261 SDFGY 265
            + GY
Sbjct: 256 EEQGY 260

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
           + LSGGQK +L +A      P +I LDEPT  LD  +   L K L++   +G +II T  
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT-- 955
Query: 227 QPSASLLNMADYLYVLTEGYCTYQG 251
             +    N+ + ++ + +G  T  G
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSG 980

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 169 LSGGQKKRLSIALELL---SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
           LSGG+ +R+ +A EL    +  ++  LDEPT GL + +   LV++L  +  +G  +I   
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 226 HQPSASLLNMADYLYVLTE------GYCTYQGT 252
           H  +  ++  AD++  L        GY    GT
Sbjct: 866 H--NLDVIKNADHIIDLGPEGGKEGGYIVATGT 896

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
           +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I           
Sbjct: 35  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 86
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKVDSIADSLS 157
               +  +IM         T++E++         ++Y  ++       E  +   A+  +
Sbjct: 87  ---SQFSWIMPG-------TIKENIIFGVSY---DEYRYRSVIKACQLEEDISKFAEKDN 133
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
           I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +  + + MA
Sbjct: 134 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           ++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 192 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 235

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTE-TNSGYIEINETRLQDHR 103
           +LKDI+      +L  + G +G+GKT LL ++ G   P + +  +SG I           
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC-------- 74
Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAK------ESKVDSIADSLS 157
               +  +IM         T++E++         ++Y  ++       E  +   A+  +
Sbjct: 75  ---SQFSWIMPG-------TIKENIIFGVSY---DEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK--LLRDMA 215
           I   +  +T  LSGGQ+ R+S+A  +  +  +  LD P   LD L    + +  + + MA
Sbjct: 122 IVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           ++  +++ +  +     L  AD + +L EG   + GT   L     DF
Sbjct: 180 NKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQNLQPDF 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	612
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-26
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-26
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-26
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-22
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-23
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	6e-23
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	5e-22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-20
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	5e-17
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	7e-15
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-14
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-14
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-13
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-13
1b0u_A	262	Histidine permease; ABC transporter, transport pro	6e-13
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-12
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-11
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	7e-11
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	7e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	9e-11
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-10
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-10
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	4e-10
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-10
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	6e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	5e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	6e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-07
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	6e-07
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-06
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	5e-06
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	6e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	3e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	3e-05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	6e-04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	8e-04

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  106 bits (267), Expect = 2e-26
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL 121
            GP+G GKT LL  ++ Y +P       G I  N         ++ +  ++ ++ ++   
Sbjct: 41  HGPNGIGKTTLLKTISTYLKP-----LKGEIIYNG---VPITKVKGKIFFLPEEIIVPRK 92

Query: 122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
           ++VE+ L   A L     Y  K  ++++    +S+ +   K  L   LS G  +R+ +A 
Sbjct: 93  ISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKKL-GELSQGTIRRVQLAS 146

Query: 182 ELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLY 240
            LL N  I  LD+P   +D  +   ++K + ++  + G +II +        L+  D   
Sbjct: 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-----ELSYCDVNE 201

Query: 241 VLTEG 245
            L + 
Sbjct: 202 NLHKY 206

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  107 bits (270), Expect = 2e-26
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 62  LGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQE 120
           +GP+G+GKT  L I++   +P     +SG + +    + +     ++   Y+ ++     
Sbjct: 47  IGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
            +   E L   A        S    E  V+   +   +           S G  ++L IA
Sbjct: 102 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158

Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH 226
             L+ NP +  LDEPT+GLD LNA  + K+L+  + +G  I+ + H
Sbjct: 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  107 bits (269), Expect = 2e-26
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 26/216 (12%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
              Y      + + ++      ++  +LG +G GK+ LLD+L G  RP       G IE+
Sbjct: 11  GFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-----QGKIEV 64

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTV----AAHLKLGNQYSRKAKESKVD 150
                       +   ++ Q        +V +   V    + H+    +      +    
Sbjct: 65  Y-----------QSIGFVPQFFSSPFAYSVLD--IVLMGRSTHINTFAKPKSHDYQ-VAM 110

Query: 151 SIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
              D L+++         LSGGQ++ + IA  + S   +I LDEPT+ LD  N   ++ L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170

Query: 211 LRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEG 245
           L D+A  Q   ++ T HQP+  +  +A+   +L + 
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVA-IANKTLLLNKQ 205

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  104 bits (263), Expect = 1e-25
 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 36/230 (15%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
            +     L  +SG   + E+  ++GP+G+GK+ LL  +AG           G I+     
Sbjct: 9   DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG------KGSIQFAGQP 62

Query: 99  LQDHRMLRKES----CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
           L        +      Y+ Q         V     +  H         K +   ++ +A 
Sbjct: 63  L--EAWSATKLALHRAYLSQQQTPPFATPVWH--YLTLHQ------HDKTRTELLNDVAG 112

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLDEPTTGLDYLNATNL 207
           +L++       T  LSGG+ +R+ +A  +L           ++ LDEP   LD    + L
Sbjct: 113 ALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172

Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMA----DYLYVLTEGYCTYQGTV 253
            K+L  ++ QG  I+ + H      LN         ++L  G     G  
Sbjct: 173 DKILSALSQQGLAIVMSSHD-----LNHTLRHAHRAWLLKGGKMLASGRR 217

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  103 bits (259), Expect = 2e-23
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 22/228 (9%)

Query: 35  THSYSIKSKDILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
            H Y +      K           +  +LG +G GKT +L ILAG   P     N G   
Sbjct: 6   IHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP-----NFGDPN 57

Query: 94  INETRLQDHRMLR-KESCYIMQD---NLLQELLTVEESLTVAAHLK--LGNQYSRKAKES 147
               + +  +  R KE     ++   N L+ +  ++     +  LK  +    ++  +  
Sbjct: 58  SKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG 117

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           K D + + L+++   N     LSGG  +RL +A  LL    +   D+P++ LD     N+
Sbjct: 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM 177

Query: 208 VKLLRDMAHQGTMIICT--LHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            K +R++     +I+    L      L  + D ++++  G  +  G V
Sbjct: 178 AKAIRELLKNKYVIVVDHDL----IVLDYLTDLIHII-YGESSVYGRV 220

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 33/241 (13%)

Query: 5   EAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKD----ILKDISGVFVSKELSV 60
            AE   ++    K       D+  S        ++   K      L   +G     E+  
Sbjct: 239 PAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIG 298

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE 120
           ILGP+G GKT    IL G         + G +   +  L      + +  +   D  +Q+
Sbjct: 299 ILGPNGIGKTTFARILVGEITA-----DEGSVTPEKQILS----YKPQRIFPNYDGTVQQ 349

Query: 121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
            L            +  ++ +        + +   L++     +    LSGG+ ++L IA
Sbjct: 350 YL------------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIA 397

Query: 181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMIICTLHQPSASLLNMADY 238
             L     +  LD+P++ LD      + K ++ +    +    I   H      L++ DY
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HD-----LSIHDY 451

Query: 239 L 239
           +
Sbjct: 452 I 452

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 19/222 (8%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL--- 99
           K ILK IS      +  ++ G +G+GKT LL+IL  Y         SG + +        
Sbjct: 34  KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----TSGTVNLFGKMPGKV 88

Query: 100 -QDHRMLRKESCYI---MQDNLLQELLTVEESLTVAAHLKLG--NQYSRKAKESKVDSIA 153
                 +R+   ++   + +   +    V + +   A   +G       + +  +   + 
Sbjct: 89  GYSAETVRQHIGFVSHSLLEKFQEGE-RVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLL 146

Query: 154 DSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD 213
             + +S        +LS G+K+R+ IA  L+  P ++ LDEP  GLD++   +L+ +L  
Sbjct: 147 KLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206

Query: 214 MAHQGT--MIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           ++       +I   H     +      + +L +G    QG V
Sbjct: 207 LSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQQGAV 247

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 97.8 bits (244), Expect = 6e-23
 Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 25/224 (11%)

Query: 35  THSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
             + S K  +   L++I+ + V+ E  +ILGP+GSGKT LL  ++G          SG I
Sbjct: 8   GITLSGKGYERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGL------LPYSGNI 60

Query: 93  EINETRLQDHRMLRKESCYIMQDNLLQEL-LTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
            IN     + R +R    Y        E+ +TV +   V  + +L     +         
Sbjct: 61  FING---MEVRKIRNYIRYSTNLPEAYEIGVTVND--IVYLYEEL-----KGLDRDLFLE 110

Query: 152 IADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL 210
           +  +L +           LS GQ   +  +L L S P I+ LDEP   +D      + + 
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170

Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP 254
           +++       I+ T            +Y      G         
Sbjct: 171 IKEYGK--EGILVTHELDML--NLYKEYKAYFLVGNRLQGPISV 210

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 95.7 bits (239), Expect = 3e-22
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 25/236 (10%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
             ++S+   ++       K+   L+++S V    E  ++ G +GSGK+ LL I+AG   P
Sbjct: 5   VVNVSHI--FHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59

Query: 83  KKTETNSGYIEIN--ETRLQDHRMLRKESCYIMQ--DNLLQELLTVEESLTVAAHLKLGN 138
                 SG +  +    +  +   +R+      Q  ++       V +   VA  +K  N
Sbjct: 60  T-----SGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAE-RVFDE--VAFAVK--N 106

Query: 139 QYSRKAKESKVDSIADS--LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT 196
            Y  +     V    +   L   + K+ +   LSGG+K+R++IA  ++  P I+ LDEP 
Sbjct: 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166

Query: 197 TGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            GLD    T+L++++      G  +I   H    +++N  D + VL +G   + GT
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGT 221

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 95.3 bits (238), Expect = 5e-22
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
            ++YS      LK I+      E++ ILG +G GK+ L     G  +P     +SG I  
Sbjct: 14  NYNYS-DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILF 67

Query: 95  NETRLQDHR----MLRKESCYIMQ--DNLLQELLTVEESLTVAAHLK-LGNQYSRKAKES 147
           +   +   R     LR+    + Q  DN L    +V +   V+     +           
Sbjct: 68  DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQD--VSFGAVNMK--LPEDEIRK 122

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           +VD+      I   K+  T  LS GQKKR++IA  L+  P ++ LDEPT GLD +  + +
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182

Query: 208 VKLLRDMAHQG--TMIICTLHQ-PSASLLNMADYLYVLTEGYCTYQGT 252
           +KLL +M  +   T+II T H           D ++V+ EG    QG 
Sbjct: 183 MKLLVEMQKELGITIIIAT-HDIDIV--PLYCDNVFVMKEGRVILQGN 227

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 99.3 bits (248), Expect = 5e-22
 Identities = 48/219 (21%), Positives = 78/219 (35%), Gaps = 27/219 (12%)

Query: 29  SALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN 88
           S  +        +   +L    G F   E+ V++G +G+GKT L+ +LAG  +P     +
Sbjct: 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----D 405

Query: 89  SGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK 148
            G             M  ++              TV +        K+  Q+        
Sbjct: 406 EGQDIPKLNV----SMKPQKIAPKFPG-------TVRQLF----FKKIRGQFLN---PQF 447

Query: 149 VDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV 208
              +   L I    +   +HLSGG+ +R++I L L     I  +DEP+  LD        
Sbjct: 448 QTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507

Query: 209 KLLRDMA-HQG-TMIICTLHQPSASLLNMADYLYVLTEG 245
           K++R    H   T  I   H        +AD + V    
Sbjct: 508 KVIRRFILHNKKTAFIVE-HDF-IMATYLADKVIVFEGI 544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 35  THSYSIKSKDILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
           TH YS  S  + +  +       ++  ++G +G GK+  L ILAG ++P     +     
Sbjct: 84  THRYSANSFKLHRLPT---PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140

Query: 94  INETRLQDHRMLRKESCYIMQDNL---LQELLTVEESLTVAAHLKLGNQ---YSRKAKES 147
               +      L+     +++D++   ++          +   ++   +      +    
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
            V      L +        + LSGG+ +R +I +  +    +   DEP++ LD     N 
Sbjct: 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA 260

Query: 208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            +++R +      +IC  H  S  L  ++D++ ++  G  +  G V
Sbjct: 261 AQIIRSLLAPTKYVICVEHDLSV-LDYLSDFVCII-YGVPSVYGVV 304

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 98.9 bits (247), Expect = 7e-22
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 26/192 (13%)

Query: 33  YDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           Y        S   L+   G     E+  I+GP+G GKT  + +LAG   P       G +
Sbjct: 360 YPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKV 413

Query: 93  EINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
           E + T             Y  Q    +   TV E L+     KL + +           +
Sbjct: 414 EWDLTVA-----------YKPQYIKAEYEGTVYELLSKIDSSKLNSNF-------YKTEL 455

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
              L I    +   + LSGG+ +R++IA  LL +  I  LDEP+  LD      + + +R
Sbjct: 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515

Query: 213 DMA--HQGTMII 222
            +   ++ T ++
Sbjct: 516 HLMEKNEKTALV 527

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 32/222 (14%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG------YRRPKKTETN 88
            H Y + +   +     +     +  I+GP+G+GKT  + ILAG             +  
Sbjct: 98  VHRYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV 155

Query: 89  SGYIEINETRLQDHRMLRKESCYIMQD---NLLQELL--TVEESLTVAAHLKLGNQYSRK 143
                 NE +    R+   E   +++    +LL + +   V E L             + 
Sbjct: 156 IRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL------------KKV 203

Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
            +  K + +   L +    +     LSGG+ +R++IA  LL      F DEP++ LD   
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263

Query: 204 ATNLVKLLRDMAHQG-TMIICT--LHQPSASLLNMADYLYVL 242
              + +++R +A++G  +++    L    A L  ++D ++V+
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDL----AVLDYLSDVIHVV 301

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 32/222 (14%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG------YRRPKKTETN 88
            H Y + +   +     V     +  I+GP+G+GK+  + ILAG             +  
Sbjct: 28  VHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85

Query: 89  SGYIEINETRLQDHRMLRKESCYIMQD---NLLQELL--TVEESLTVAAHLKLGNQYSRK 143
                 NE +    ++   E   +++    +L+ + +   V E L             + 
Sbjct: 86  IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL------------KKA 133

Query: 144 AKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
            +  K++ +  +L +        +HLSGG+ +R++IA  LL N +  F DEP++ LD   
Sbjct: 134 DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193

Query: 204 ATNLVKLLRDMAHQG-TMIICT--LHQPSASLLNMADYLYVL 242
             N  + +R ++ +G ++++    L    A L  ++D ++V+
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHDL----AVLDYLSDIIHVV 231

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 27/181 (14%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL-QDHR 103
            L+   G     E+  I+GP+G GKT  + +LAG   P       G IE + T   +   
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEWDLTVAYKPQY 355

Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN 163
           +         +        TV E L+           S+         +   L I    +
Sbjct: 356 IKAD-----YEG-------TVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYD 396

Query: 164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA--HQGTMI 221
                LSGG+ +R++IA  LL +  I  LDEP+  LD      + + +R +   ++ T +
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

Query: 222 I 222
           +
Sbjct: 457 V 457

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 79.5 bits (197), Expect = 5e-17
 Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 28/198 (14%)

Query: 44  DILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET- 97
           +ILK IS     G FVS     I+G SGSGK+ LL IL     P       G + +    
Sbjct: 18  EILKGISLSVKKGEFVS-----IIGASGSGKSTLLYILGLLDAP-----TEGKVFLEGKE 67

Query: 98  --RLQDHRM--LRKESC-YIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
                +  +  LR     ++ Q   L+ EL T  E+  V   +    +  ++AKE + + 
Sbjct: 68  VDYTNEKELSLLRNRKLGFVFQFHYLIPEL-TALEN--VIVPMLKMGKPKKEAKE-RGEY 123

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           +   L +    +     LSGG+++R++IA  L + P ++F DEPT  LD  N   ++ + 
Sbjct: 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183

Query: 212 RDMAHQG-TMIICTLHQP 228
             +   G ++++ T H+ 
Sbjct: 184 LKINEGGTSIVMVT-HER 200

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 73.3 bits (181), Expect = 7e-15
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 40/213 (18%)

Query: 45  ILKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI------- 92
            LK+++     G FVS     I+GPSGSGK+ +L+I+    +P    T            
Sbjct: 20  ALKNVNLNIKEGEFVS-----IMGPSGSGKSTMLNIIGCLDKP----TEGEVYIDNIKTN 70

Query: 93  EINETRLQDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
           ++++  L   R  R +  ++ Q  NL+  L T  E++ +    K     S + +  +   
Sbjct: 71  DLDDDELTKIR--RDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGEERRKRALE 127

Query: 152 IADSLSISTCKNTLTKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
                 +         H    LSGGQ++R++IA  L +NP II  D+PT  LD      +
Sbjct: 128 CLKMAELE---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184

Query: 208 VKLLRDMAHQG--TMIICTLHQPSASLLNMADY 238
           ++LL+ +  +   T+++ T H       N+A +
Sbjct: 185 MQLLKKLNEEDGKTVVVVT-HDI-----NVARF 211

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 30/194 (15%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-- 102
           +LK I+      E+ V++GPSGSGK+  L  L           + G I I+   L+    
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----DEGEIIIDGINLKAKDT 93

Query: 103 --RMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL--- 156
               +R+E   + Q  NL   + TV  ++T      L     RK    K ++ A  L   
Sbjct: 94  NLNKVREEVGMVFQRFNLFPHM-TVLNNIT------LAPMKVRKWPREKAEAKAMELLDK 146

Query: 157 -SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LL 211
             +    +     LSGGQ +R++IA  L   P I+  DEPT+ LD      +V     ++
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD----PEMVGEVLSVM 202

Query: 212 RDMAHQG-TMIICT 224
           + +A++G TM++ T
Sbjct: 203 KQLANEGMTMVVVT 216

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 71.3 bits (176), Expect = 4e-14
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 32/221 (14%)

Query: 45  ILKDISGVFVSK-ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-- 101
            +K I  + V + ++  ++G +G+GKT  L  +AG  R +      G I  N   + +  
Sbjct: 21  AIKGID-LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKP 74

Query: 102 -HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-- 158
            H + R     + +   +   LTV E+L + A       Y+RK KE     +    S+  
Sbjct: 75  AHVINRMGIALVPEGRRIFPELTVYENLMMGA-------YNRKDKEGIKRDLEWIFSLFP 127

Query: 159 --STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK----LLR 212
                   L   LSGG+++ L+I   L+S P ++ +DEP+ GL    A  LV     +++
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL----APILVSEVFEVIQ 183

Query: 213 DMAHQGTMIICTL-HQPSASLLNMADYLYVLTEGYCTYQGT 252
            +  +GT I+  L  Q +   L +A Y YVL  G    +G 
Sbjct: 184 KINQEGTTIL--LVEQNALGALKVAHYGYVLETGQIVLEGK 222

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 28/201 (13%)

Query: 54  VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
           + ++  V+LGP+G+GK+  L+++AG  +P     + G + +N   +      R+   ++ 
Sbjct: 22  MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76

Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
           QD  L   L+V  +  +A  L+      R  ++ +V  +A+ L I+   +     LSGG+
Sbjct: 77  QDYALFPHLSVYRN--IAYGLR---NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131

Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--------G-TMIICT 224
           ++R+++A  L+  P ++ LDEP + +D        K    +  +           ++  T
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDL-------KTKGVLMEELRFVQREFDVPILHVT 184

Query: 225 LHQPSASLLNMADYLYVLTEG 245
                A    +AD + V+  G
Sbjct: 185 HDLIEA--AMLADEVAVMLNG 203

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 41/216 (18%)

Query: 61  ILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE---TRLQDHRMLRKESCYIMQDN- 116
           I+GP+GSGK+ L++++ G+ +      + G +       T  +   +         Q   
Sbjct: 38  IIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDITNKEPAELYHYGIVRTFQ-TP 91

Query: 117 -LLQELLTVEESLTVAAHLKLGN--------QYSRKAKES--KVDSIADSLSISTCKNTL 165
             L+E+ TV E+L +       +        ++  K +E   K   I + L +S   +  
Sbjct: 92  QPLKEM-TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTL 225
              LSGGQ K + I   L++NP +I +DEP  G+    A ++   + ++  +G       
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF---- 206

Query: 226 HQPSASLL---------NMADYLYVLTEGYCTYQGT 252
                 L+         N  D+LYV+  G    +G 
Sbjct: 207 ------LIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 42/206 (20%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           +LK +S    + ++  I+G SGSGK+  L  +    +P     + G I +N   + +   
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQNI-NLVR 74

Query: 105 LRKESCYIMQDNLLQEL----------------LTVEESLTVAAHLKLG---NQYSRKAK 145
            +     +   N L+ L                +TV E++  A    LG   +    +A 
Sbjct: 75  DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL 134

Query: 146 E--SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN 203
           +  +KV  I +       +     HLSGGQ++R+SIA  L   P ++  DEPT+ LD   
Sbjct: 135 KYLAKV-GIDER-----AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD--- 185

Query: 204 ATNLV----KLLRDMAHQG-TMIICT 224
              LV    ++++ +A +G TM++ T
Sbjct: 186 -PELVGEVLRIMQQLAEEGKTMVVVT 210

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 31/192 (16%)

Query: 37  SYSIKSKDI--LKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
            +   ++ I  L ++S       L V       ++G SG+GK+ L+  +    RP     
Sbjct: 33  VFHQGTRTIQALNNVS-------LHVPAGQIYGVIGASGAGKSTLIRCVNLLERP----- 80

Query: 88  NSGYIEINETRL-----QDHRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYS 141
             G + ++   L      +    R++   I Q  NLL    TV  +  VA  L+L N   
Sbjct: 81  TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGN--VALPLELDN-TP 136

Query: 142 RKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY 201
           +   + +V  +   + +    ++   +LSGGQK+R++IA  L SNP ++  D+ T+ LD 
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP 196

Query: 202 LNATNLVKLLRD 213
               ++++LL+D
Sbjct: 197 ATTRSILELLKD 208

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 68.1 bits (166), Expect = 4e-12
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 104 MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TC 161
           M+  ++ +I +  L++     +    V     L +   R     +++     L +     
Sbjct: 837 MMSVDNAWIPRGELVESH--SKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894

Query: 162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI 221
            ++  + LSGGQK +L +A      P +I LDEPT  LD  +   L K L++   +G +I
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVI 952

Query: 222 ICTLHQPSASLLN-MADYLYVLTEGYCT-YQG 251
           I T H  SA     + + ++ + +G  T    
Sbjct: 953 IIT-H--SAEFTKNLTEEVWAVKDGRMTPSGH 981

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 67.0 bits (163), Expect = 1e-11
 Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 9   QDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSG 68
           +    +     N   ++     L     S +  +K +L              I GP+G G
Sbjct: 414 KRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCG 473

Query: 69  KTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL 128
           K+ L+  +A            G+    E R            Y     +  ++       
Sbjct: 474 KSTLMRAIAN-------GQVDGFPTQEECRT----------VY-----VEHDIDGTHSDT 511

Query: 129 TVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNP 187
           +V   +           +  +         +          LSGG K +L++A  +L N 
Sbjct: 512 SVLDFVFESGV----GTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNA 567

Query: 188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
            I+ LDEPT  LD +N   LV  L       T I 
Sbjct: 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSIT 600

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 40/243 (16%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F+++ +S   Y         ++ L+D+S   +  +   ++GPSG+GK+ +L +L      
Sbjct: 56  FENVHFS---YA------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-----F 101

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
           +  + +SG I I+   +       LR     + QD +L        + T+A +++ G   
Sbjct: 102 RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-------NDTIADNIRYGRVT 154

Query: 141 SRKAKESKVDSIADSLSISTCKNTLTKH-----------LSGGQKKRLSIALELLSNPSI 189
              A   +V++ A +  I        +            LSGG+K+R++IA  +L  P I
Sbjct: 155 ---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211

Query: 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
           I LDE T+ LD  N   +   L  +    T I+   H+ S +++N AD + V+ +G    
Sbjct: 212 ILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-HRLS-TVVN-ADQILVIKDGCIVE 268

Query: 250 QGT 252
           +G 
Sbjct: 269 RGR 271

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 63/255 (24%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F++I +         Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P
Sbjct: 10  FRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL------------QELLTVEESL 128
                 +G + I+   L       LR++   ++QDN+L               ++VE+ +
Sbjct: 62  -----ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 116

Query: 129 TVA----AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIAL 181
             A    AH    +L   Y+    E                      LSGGQ++R++IA 
Sbjct: 117 YAAKLAGAHDFISELREGYNTIVGEQGA------------------GLSGGQRQRIAIAR 158

Query: 182 ELLSNPSIIFLDEPTTGLDY----LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD 237
            L++NP I+  DE T+ LDY    +   N+ K+      +  +II   H+ S   +  AD
Sbjct: 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKI---CKGRTVIIIA--HRLST--VKNAD 211

Query: 238 YLYVLTEGYCTYQGT 252
            + V+ +G    QG 
Sbjct: 212 RIIVMEKGKIVEQGK 226

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 62.6 bits (153), Expect = 5e-11
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 39/243 (16%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F D+++S   Y        +   LK I+    S     ++G +GSGK+ +  +L  +   
Sbjct: 20  FSDVNFS---YPKQ----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
                  G I+I    +  +    +R     + QD +L        + T+  ++  G   
Sbjct: 73  ------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-------NETIKYNILYGKL- 118

Query: 141 SRKAKESKVDSIADSLSISTCKNTLTK-----------HLSGGQKKRLSIALELLSNPSI 189
              A + +V     S  +      L K            LSGG+++R++IA  LL +P I
Sbjct: 119 --DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176

Query: 190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY 249
           +  DE T+ LD        K + D+    T+II   H+ S ++ + A+ + +L +G    
Sbjct: 177 VIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRLS-TISS-AESIILLNKGKIVE 233

Query: 250 QGT 252
           +GT
Sbjct: 234 KGT 236

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 44/250 (17%), Positives = 77/250 (30%), Gaps = 42/250 (16%)

Query: 32  YYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT-----E 86
           Y  T  +               V  E   +  PS    +  ++ L  Y            
Sbjct: 82  YRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQG 141

Query: 87  TNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
                +E +E R +  R +     +      L EL     S      ++   +Y   A+E
Sbjct: 142 QIDAILESDEAREKVVREVLNLDKFETAYKKLSELK--GGSGGTEELIEKVKKYKALARE 199

Query: 147 SKVDSIADSLSISTCKNTLTK---------------------------HLSGGQKKRLSI 179
           + +  I +  S    + T  K                            LSGG++  L +
Sbjct: 200 AALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGL 259

Query: 180 ALEL------LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLL 233
           A  L          S++ LDEPT  LD      L+ ++     +   +I   H     L 
Sbjct: 260 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELK 317

Query: 234 NMADYLYVLT 243
           + AD++  ++
Sbjct: 318 DAADHVIRIS 327

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 64.1 bits (157), Expect = 7e-11
 Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 41/234 (17%)

Query: 37  SYSIKSKDILKDISGVFVSK--ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
            Y   +  +L  ++  F  K   L  +LG +GSGK+ L++++     P+  +   G +E+
Sbjct: 350 RYFENTDPVLSGVN--FSVKPGSLVAVLGETGSGKSTLMNLI-----PRLIDPERGRVEV 402

Query: 95  NET--RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSI 152
           +E   R    + LR     + Q+ +L        S T+  +LK G +    A +   D I
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLF-------SGTIKENLKWGRE---DATD---DEI 449

Query: 153 ADSLSISTCKNTLTKH--------------LSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
            ++  I+   + +                  SGGQK+RLSIA  L+  P ++ LD+ T+ 
Sbjct: 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509

Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           +D +    ++  L+      T  I T  Q   + L  AD + VL EG     GT
Sbjct: 510 VDPITEKRILDGLKRYTKGCTTFIIT--QKIPTALL-ADKILVLHEGKVAGFGT 560

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 63/255 (24%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
            + + ++   YD       S+ IL+DIS       +    GPSG GK+ +  +L      
Sbjct: 4   ARHVDFA---YDD------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-----E 49

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL-------------QELLTVEES 127
           +  +  +G I I+   + +  +   R +  ++ QD+ +             +   T E+ 
Sbjct: 50  RFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109

Query: 128 LTVA----AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA 180
             V     A      + +Q + +  E  V                   +SGGQ++RL+IA
Sbjct: 110 WQVLDLAFARSFVENMPDQLNTEVGERGV------------------KISGGQRQRLAIA 151

Query: 181 LELLSNPSIIFLDEPTTGLDYLNAT-NLVK--LLRDMAHQGTMIICTLHQPSASLLNMAD 237
              L NP I+ LDE T  LD  + + ++V+  L   M  + T++I   H+ S ++++ AD
Sbjct: 152 RAFLRNPKILMLDEATASLD--SESESMVQKALDSLMKGRTTLVIA--HRLS-TIVD-AD 205

Query: 238 YLYVLTEGYCTYQGT 252
            +Y + +G  T  G 
Sbjct: 206 KIYFIEKGQITGSGK 220

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 41/215 (19%)

Query: 46  LKDIS-----GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ 100
           L ++S     G +       ILGP+G+GKT  L+++AG+  P     +SG I ++   + 
Sbjct: 16  LDNLSLKVESGEYFV-----ILGPTGAGKTLFLELIAGFHVP-----DSGRILLDGKDVT 65

Query: 101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA-KESKVDSIADSLSIS 159
           D    + +  ++ Q+  L   + V+++  +   +++     +K     +V   A  L I 
Sbjct: 66  DLSPEKHDIAFVYQNYSLFPHMNVKKN--LEFGMRM-----KKIKDPKRVLDTARDLKIE 118

Query: 160 TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-------LR 212
              +     LSGG+++R+++A  L++NP I+ LDEP + LD        +        L 
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-------RTQENAREMLS 171

Query: 213 DMAHQ-G-TMIICTLHQPSASLLNMADYLYVLTEG 245
            +  +   T++  T  Q  A    MAD + V+ +G
Sbjct: 172 VLHKKNKLTVLHITHDQTEA--RIMADRIAVVMDG 204

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 52/219 (23%)

Query: 4   EEAELQD-LKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-- 60
            E E  +   ++ R +  +  +D++++        Y  K K  L  +S        S+  
Sbjct: 324 LETERDNGKYEAERVNGEVDVKDVTFT--------YQGKEKPALSHVS-------FSIPQ 368

Query: 61  -----ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRM--LRKESCYI 112
                ++G SGSGK+ + ++    Y      + +SG I ++   ++D+++  LR+    +
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFY------DVDSGSICLDGHDVRDYKLTNLRRHFALV 422

Query: 113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS----ISTCKN---TL 165
            Q+  L        + T+A ++    +   +    +++  A        I        T+
Sbjct: 423 SQNVHLF-------NDTIANNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTV 473

Query: 166 TKH----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
                  LSGGQ++R++IA  LL +  ++ LDE T+ LD
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            ++ +S      E+  +LGPSGSGKT +L ++AG  RP       G + I   R+ D   
Sbjct: 30  SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----TKGDVWIGGKRVTDLPP 84

Query: 105 LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT 164
            ++    + Q+  L + +TV ++  V+  L+      +   +++V  +   + + +  N 
Sbjct: 85  QKRNVGLVFQNYALFQHMTVYDN--VSFGLREKRV-PKDEMDARVRELLRFMRLESYANR 141

Query: 165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM------AHQG 218
               LSGGQ++R+++A  L   P ++  DEP   +D        ++ R++       H  
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT-------QIRRELRTFVRQVHDE 194

Query: 219 ---TMIICTLH-QPSASLLNMADYLYVLTEG 245
              T +  T H Q  A  L +AD + VL EG
Sbjct: 195 MGVTSVFVT-HDQEEA--LEVADRVLVLHEG 222

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 27/222 (12%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
            +       L +++    + E   ILGPSG+GKT  + I+AG   P     ++G +  ++
Sbjct: 12  VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----STGELYFDD 66

Query: 97  TRLQDHRMLR---KESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS 151
             +  +  L    ++    M  Q   L   LT  E+  +A  L    + S++    +V+ 
Sbjct: 67  RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN--IAFPLTN-MKMSKEEIRKRVEE 123

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA------- 204
           +A  L I    N   + LSG Q++R+++A  L+ +PS++ LDEP + LD   A       
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD---ARMRDSAR 180

Query: 205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY 246
             + ++   +    T+++ +          +AD + VL +G 
Sbjct: 181 ALVKEVQSRL--GVTLLVVSHDPADI--FAIADRVGVLVKGK 218

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 70/228 (30%)

Query: 4   EEAELQDLKKS-PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-- 60
            E E  + K+   R   +L F++++++        Y  +    L++I+       L +  
Sbjct: 324 SEQEKDEGKRVIDRATGDLEFRNVTFT--------YPGREVPALRNIN-------LKIPA 368

Query: 61  -----ILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRM--LRKESCYI 112
                ++G SGSGK+ +  ++   Y      + + G+I ++   L+++ +  LR +   +
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFY------DIDEGHILMDGHDLREYTLASLRNQVALV 422

Query: 113 MQDNLL-------------QELLTVEESLTVA----AH---LKLGNQYSRKAKESKVDSI 152
            Q+  L              E  + E+    A    A     K+ N       E+ V   
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-- 480

Query: 153 ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
                           LSGGQ++R++IA  LL +  I+ LDE T+ LD
Sbjct: 481 ----------------LSGGQRQRIAIARALLRDSPILILDEATSALD 512

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 34/233 (14%)

Query: 35  THSY-SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE 93
             SY S K   ILK ++    S +   ++G SG GK+  + ++     P       G + 
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----LDGMVS 448

Query: 94  INETRLQD--HRMLRKESCYIMQ----------DNLLQELLTVEESLTVAAHLKLGNQYS 141
           I+   ++    R LR+    + Q          +N+      V       A         
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA--------- 499

Query: 142 RKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL 199
              KE+        L     T        LSGGQK+R++IA  L+ NP I+ LDE T+ L
Sbjct: 500 --VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557

Query: 200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           D  +   +   L       T I+   H+ S   +  AD +     G    QG 
Sbjct: 558 DTESEAVVQAALDKAREGRTTIVIA-HRLST--VRNADVIAGFDGGVIVEQGN 607

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 11/88 (12%)

Query: 169  LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLHQ 227
            LSGGQK+R++IA  L+  P I+ LDE T+ LD   +  +V+   D A +G T I+   H+
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIA-HR 1229

Query: 228  PSASLLNM---ADYLYVLTEGYCTYQGT 252
                 L+    AD + V+  G     GT
Sbjct: 1230 -----LSTIQNADLIVVIQNGKVKEHGT 1252

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 169 LSGGQKKRLSIALEL------LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMI 221
           LSGG++  L +A  L          S++ LDEPT  LD      L+ ++     +   +I
Sbjct: 58  LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117

Query: 222 ICTLHQPSASLLNMADYL 239
           + + H     L + AD++
Sbjct: 118 LVS-HDE--ELKDAADHV 132

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 48/236 (20%), Positives = 77/236 (32%), Gaps = 61/236 (25%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI-- 94
            Y+     IL++IS      +   +LG +GSGK+ LL                G I+I  
Sbjct: 28  KYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------LLNTEGEIQIDG 81

Query: 95  ---NETRLQDHRMLRKESCYIMQDNLL-----------------QELLTVEESLTVAAHL 134
              +   L+     RK    I Q   +                 QE+  V +       L
Sbjct: 82  VSWDSITLEQ---WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADE----VGL 134

Query: 135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDE 194
           +           S ++     L            LS G K+ + +A  +LS   I+ LDE
Sbjct: 135 R-----------SVIEQFPGKLDFVLVDGG--CVLSHGHKQLMCLARSVLSKAKILLLDE 181

Query: 195 PTTGLDYLNATNLV--KLLRDMAHQGTMIICTLHQPSASLLN---MADYLYVLTEG 245
           P+  LD    T  +  + L+  A     +I    +     +      D   V+ E 
Sbjct: 182 PSAHLDP--VTYQIIRRTLKQ-AFADCTVILCEAR-----IEAMLECDQFLVIEEN 229

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)

Query: 57  ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML----RKESCYI 112
           E+  I+G SG GKT LL  LAG+ +P     +SG I ++   +           +   Y+
Sbjct: 31  EILFIIGASGCGKTTLLRCLAGFEQP-----DSGEISLSGKTIFSKNTNLPVRERRLGYL 85

Query: 113 MQD-----NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK 167
           +Q+     +     LTV  +  +A  L  G       +  +++++ +   IS        
Sbjct: 86  VQEGVLFPH-----LTVYRN--IAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYPH 137

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ--------G- 218
            LSGGQ++R ++A  L  +P +I LDEP + LD        +L R +           G 
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALD-------EQLRRQIREDMIAALRANGK 190

Query: 219 TMIICTLH-QPSASLLNMADYLYVLTEG 245
           + +  + H +  A  L  AD + V+ +G
Sbjct: 191 SAVFVS-HDREEA--LQYADRIAVMKQG 215

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 58/194 (29%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSV-------ILGPSGSGKTKLLDILAGYRRPKKTET 87
           +  Y+     ILKDI+       LS+        +G SG GK+ L++++     P+  + 
Sbjct: 346 SFQYNDNEAPILKDIN-------LSIEKGETVAFVGMSGGGKSTLINLI-----PRFYDV 393

Query: 88  NSGYIEINETRLQDHRM--LRKESCYIMQDNLL------------QELLTVEESLTVA-- 131
            SG I I+   ++D     LR +   + QDN+L            +   T EE +  A  
Sbjct: 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM 453

Query: 132 --AH---LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSN 186
             AH   + L   Y     +++V      LS             GGQK+RLSIA   L+N
Sbjct: 454 ANAHDFIMNLPQGY-----DTEVGERGVKLS-------------GGQKQRLSIARIFLNN 495

Query: 187 PSIIFLDEPTTGLD 200
           P I+ LDE T+ LD
Sbjct: 496 PPILILDEATSALD 509

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 45/178 (25%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ--DH 102
           +L+ ++      +++ ++GP+GSGK+ +  +L    +P       G + ++   L   DH
Sbjct: 34  VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----TGGKVLLDGEPLVQYDH 88

Query: 103 RMLRKESCYIMQ----------DNL---LQELLTVEESLTVA----AH---LKLGNQYSR 142
             L  +   + Q          +N+   L    T+EE   VA    AH         Y  
Sbjct: 89  HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT 148

Query: 143 KAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +  E+                     LSGGQ++ +++A  L+  P ++ LD  T+ LD
Sbjct: 149 EVGETGN------------------QLSGGQRQAVALARALIRKPRLLILDNATSALD 188

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLHQ 227
           LSGGQ+ R+S+A  +  +  +  LD P   LD L    +    +  +    T I+ T  +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-SK 218

Query: 228 PSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
                L  AD + +L EG   + GT   L     DF
Sbjct: 219 --MEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 16/215 (7%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN------E 96
            + +  + G+   ++    +G       K L+ + G    K+    +   E++      E
Sbjct: 149 LETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKE 208

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
              +    L K      ++     L      L      +  +++       ++    +  
Sbjct: 209 KLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR 268

Query: 157 SISTCKNTLTKHLSGGQKKRLSIAL-----ELLSNPSI--IFLDEPTTGLDYLNATNLVK 209
             +        +LSGG++  ++++L       L    +  I LDEPT  LD      L +
Sbjct: 269 VHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE 328

Query: 210 LLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244
           + R +     MII T H     L ++AD +  + +
Sbjct: 329 IFRKVKSIPQMIIIT-HHR--ELEDVADVIINVKK 360

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLV-KLLRDMAHQGTMIICTLH 226
            LSGGQ+ R+S+A  +  +  +  LD P   LD L    +    +  +    T I+ T  
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT-S 188

Query: 227 QPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLSDF 263
           +     L  AD + +L EG   + GT   L     DF
Sbjct: 189 K--MEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 49/382 (12%), Positives = 113/382 (29%), Gaps = 116/382 (30%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKL-LDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
           L+    V +        G  GSGKT + LD+   Y+   K +    ++ +      +  +
Sbjct: 147 LRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 105 LRKES-CYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK--------VDSIADS 155
              +   Y +  N        + S  +   +       R+  +SK        + ++ ++
Sbjct: 200 EMLQKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 156 LSIST----CKNTL--------TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL--DY 201
            + +     CK  L        T  LS      +S     L + S+    +    L   Y
Sbjct: 257 KAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHIS-----LDHHSMTLTPDEVKSLLLKY 310

Query: 202 LNATNLVKLLRDMAHQGT-MIICTLHQPSASLLNMAD----YLYVLTEGYCTYQGTVPGL 256
           L+     + L           +  +   + S+ +       + +V               
Sbjct: 311 LDCR--PQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHV--------------- 350

Query: 257 VPYLSDFGYQCPSNYNPADYVIEVSLEA------DRMFEPCTNGKFFNANSSHNTKTVLK 310
                        N +    +IE SL         +MF+  +    F  ++         
Sbjct: 351 -------------NCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAH-------- 386

Query: 311 TIEEKGLSSKEFYSVLSTEIPY--PADCLSQFCILLKRTLIKCFRDRFLTKVRLSLHLII 368
            I    L      S++  ++        +++     K +L++           +S+  I 
Sbjct: 387 -IPTILL------SLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKES----TISIPSIY 432

Query: 369 GSFLGIMYRGIGDDAARVHNNL 390
                +  +   ++   +H ++
Sbjct: 433 -----LELKVKLENEYALHRSI 449

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            L +I+      E   +LGPSGSGK+ LL  +AG       +  SG I  +E  + +  +
Sbjct: 18  ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----YKPTSGKIYFDEKDVTE--L 70

Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
             K+    +  Q+  L   +TV +++  A  L+L  +  R+  + KV  +A  L I    
Sbjct: 71  PPKDRNVGLVFQNWALYPHMTVYKNI--AFPLEL-RKAPREEIDKKVREVAKMLHIDKLL 127

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           N     LSGGQ++R++IA  L+  P ++ LDEP + LD
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            +  +S      E   +LGPSG GKT  L +LAG       +  SG I  ++  + D  +
Sbjct: 18  AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-----KPTSGEIYFDDVLVND--I 70

Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
             K     M  Q+  L   +TV E++     L+   + S+   E +V  IA  L I    
Sbjct: 71  PPKYREVGMVFQNYALYPHMTVFENIAFP--LRA-RRISKDEVEKRVVEIARKLLIDNLL 127

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +     LSGGQ++R+++A  L+  P ++  DEP + LD
Sbjct: 128 DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK---LLRDMAHQGTMIICTL 225
           LSGGQK+R+S+A  + SN  I   D+P + +D     ++ +     + M    T I+ T 
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT- 186

Query: 226 HQPSASLLNMADYLYVLTEGYCTYQGT 252
           H    S L   D + V++ G  +  G+
Sbjct: 187 HS--MSYLPQVDVIIVMSGGKISEMGS 211

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            +  ++      E  V+LGPSG GKT  L ++AG       E   G I   +  +    +
Sbjct: 26  AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----EEPTEGRIYFGDRDVTY--L 78

Query: 105 LRKESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
             K+    M  Q   +   +TV E++  A  LK+  ++ +   + +V   A+ L I    
Sbjct: 79  PPKDRNISMVFQSYAVWPHMTVYENI--AFPLKI-KKFPKDEIDKRVRWAAELLQIEELL 135

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           N     LSGGQ++R+++A  ++  P ++ +DEP + LD
Sbjct: 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 62/194 (31%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           SI  + ILK ++ V    E+  ++GP+G+GK+ L  ILAG   P+ T    G I ++   
Sbjct: 12  SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVE-RGEILLDG-- 66

Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH--LKLGNQY---------------- 140
                           +N+L+  L+ +E     A   L L  QY                
Sbjct: 67  ----------------ENILE--LSPDER----ARKGLFLAFQYPVEVPGVTIANFLRLA 104

Query: 141 --SRKAKE-------SKVDSIADSLSISTCKNTLTKHL----SGGQKKRLSIA-LELLSN 186
             ++  +E       +KV    + L     ++ L+++L    SGG+KKR  I  L +L  
Sbjct: 105 LQAKLGREVGVAEFWTKVKKALELLDWD--ESYLSRYLNEGFSGGEKKRNEILQLLVL-E 161

Query: 187 PSIIFLDEPTTGLD 200
           P+   LDE  +GLD
Sbjct: 162 PTYAVLDETDSGLD 175

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 14/162 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM 104
            ++++S      E  ++LGPSG GKT  L ++AG       E + G I I +  + D   
Sbjct: 18  AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----EEPSRGQIYIGDKLVADPEK 72

Query: 105 LR----KESCYIM--QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI 158
                 K+    M  Q   L   +TV +++     LKL  +  R+  + +V  +A+ L +
Sbjct: 73  GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKL-RKVPRQEIDQRVREVAELLGL 129

Query: 159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +   N   + LSGGQ++R+++   ++  P +  +DEP + LD
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 66/198 (33%)

Query: 39  SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR 98
           S++ K IL+ +S      E+  I+GP+GSGK+ L   LAG  R    E   G +E     
Sbjct: 29  SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--RE-DYEVTGGTVEFKG-- 83

Query: 99  LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH--LKLGNQY---------------- 140
                            +LL   L+ E+     A   + +  QY                
Sbjct: 84  ----------------KDLLA--LSPEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTA 121

Query: 141 ---SRKAK----------ESKVDSIADSLSISTCKNTLTKHL----SGGQKKRLSIA-LE 182
               R  +          +  ++     L +   ++ LT+ +    SGG+KKR  I  + 
Sbjct: 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMP--EDLLTRSVNVGFSGGEKKRNDILQMA 179

Query: 183 LLSNPSIIFLDEPTTGLD 200
           +L  P +  LDE  +GLD
Sbjct: 180 VL-EPELCILDESDSGLD 196

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 41/212 (19%)

Query: 4   EEAELQDLKKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSV-IL 62
           EE +  D  +       + F+++ +S   YD      K K +LKDI+   +     V ++
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFS---YD------KKKPVLKDIT-FHIKPGQKVALV 387

Query: 63  GPSGSGKTKLLDILAG-YRRPKKTETNSGYI-----EINETRLQDHRMLRKESCYIMQDN 116
           GP+GSGKT ++++L   Y      + + G I     +I + +      LR     ++QD 
Sbjct: 388 GPTGSGKTTIVNLLMRFY------DVDRGQILVDGIDIRKIKRSS---LRSSIGIVLQDT 438

Query: 117 LLQELLTVEESLTVAAHLKLGN------QYSRKAKESKVDSIADSLS--ISTCKNTLTKH 168
           +L        S TV  +LK GN      +    AK +  D     L     T      + 
Sbjct: 439 ILF-------STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491

Query: 169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           LS GQ++ L+I    L+NP I+ LDE T+ +D
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVD 523

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 46/176 (26%)

Query: 44  DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-- 101
            + KDI+      E  V +GPSG GK+ LL ++AG          SG + I E R+ D  
Sbjct: 17  VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-----TITSGDLFIGEKRMNDTP 71

Query: 102 -----------------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA 144
                            H                   L+V E++  +  LKL     ++ 
Sbjct: 72  PAERGVGMVFQSYALYPH-------------------LSVAENM--SFGLKL-AGAKKEV 109

Query: 145 KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
              +V+ +A+ L ++   +   K LSGGQ++R++I   L++ PS+  LDEP + LD
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	612
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.98
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.97
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.96
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.94
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.94
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.91
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.89
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.87
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.87
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.87
2og2_A	359	Putative signal recognition particle receptor; nuc	99.86
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.86
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.85
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.84
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.84
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.83
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.82
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.81
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.81
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.79
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.78
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.78
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.77
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.76
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.75
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.74
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.73
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.73
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.7
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.69
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.64
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.62
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.6
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.59
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.58
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.58
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.54
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.52
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.5
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.47
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.47
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.45
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.45
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.42
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.38
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.36
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.36
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.34
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.27
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.26
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.21
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.2
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.07
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.07
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.01
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.97
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.97
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.95
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.94
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.92
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.91
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.91
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.88
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.7
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.68
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.58
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.53
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.51
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.4
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.39
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.37
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.34
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.31
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.3
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.29
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.2
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.18
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.16
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.11
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.1
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.08
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.03
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.99
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.96
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.95
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.93
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.85
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.85
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.77
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.77
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.66
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.61
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.6
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.59
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.57
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.54
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.46
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.42
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.37
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.36
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.35
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.35
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.32
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.29
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.26
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.25
3ice_A	422	Transcription termination factor RHO; transcriptio	97.25
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.24
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.23
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.2
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.18
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.17
3bos_A	242	Putative DNA replication factor; P-loop containing	97.11
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.08
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.08
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.01
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.98
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.98
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.93
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.93
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.91
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.85
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.83
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.82
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.81
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.78
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.76
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.7
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.67
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.66
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.65
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.61
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.59
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.58
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.55
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.53
2qgz_A	308	Helicase loader, putative primosome component; str	96.52
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.47
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.46
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.37
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.35
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.33
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.29
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.27
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.27
3io5_A	333	Recombination and repair protein; storage dimer, i	96.25
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.25
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.24
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.23
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.22
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.2
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.14
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.06
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.05
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.04
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.98
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.97
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.97
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.97
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.96
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.94
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.91
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.9
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.9
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.89
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.86
1via_A	175	Shikimate kinase; structural genomics, transferase	95.85
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.81
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.8
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.75
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.73
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.73
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.69
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.68
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.64
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.62
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.59
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.59
3co5_A	143	Putative two-component system transcriptional RES	95.55
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.55
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.54
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.53
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.53
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.5
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.45
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.4
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.39
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.33
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.33
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.32
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.32
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.29
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.28
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.24
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.21
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.21
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.2
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.2
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.2
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.2
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.18
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.17
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.15
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.15
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.15
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.13
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.12
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.1
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.1
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.06
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.05
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.04
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.03
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.02
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.02
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.02
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.99
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.98
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.9
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.88
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.86
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.85
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.84
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.78
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	94.78
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.75
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.73
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.72
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.72
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.7
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.7
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.7
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.69
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.69
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.67
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.62
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.62
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.6
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.59
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.59
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.58
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.58
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.57
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.57
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.57
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.54
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.54
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.52
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.5
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.49
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.49
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.49
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.46
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.45
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.43
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.4
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.4
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.39
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.39
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.38
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.37
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.36
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.35
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.35
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.35
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.33
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.33
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.29
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.26
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.26
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.26
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.25
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.21
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.21
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.2
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.17
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.16
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.12
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.11
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.11
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.1
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.1
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.05
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.02
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.02
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.0
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.98
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.97
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.95
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.91
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	93.88
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.87
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.86
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.77
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	93.75
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.72
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.72
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.69
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.69
3llu_A	196	RAS-related GTP-binding protein C; structural geno	93.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.64
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.64
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.64
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.63
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.63
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.58
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.56
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.56
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.55
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.51
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.5
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	93.46
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	93.4
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	93.39
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.37
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.27
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.16
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.13
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	93.08
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.04
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.03
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.02
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	92.96
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	92.85
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	92.8
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	92.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.74
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	92.7
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	92.39
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.39
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	92.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	92.07
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	91.9
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	91.82
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	91.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	91.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.74
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	91.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	91.64
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	91.62
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.88
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.53
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	91.39

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=7.4e-52  Score=436.63  Aligned_cols=225  Identities=22%  Similarity=0.351  Sum_probs=201.9

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|..      +.+.+++|+|||+++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+
T Consensus        22 ~~mi~v~~ls~~y~~------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-----~~G~I~i~G~   90 (366)
T 3tui_C           22 KHMIKLSNITKVFHQ------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TEGSVLVDGQ   90 (366)
T ss_dssp             -CCEEEEEEEEEEEC------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTE
T ss_pred             CceEEEEeEEEEeCC------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-----CceEEEECCE
Confidence            346999999999842      12346799999999999999999999999999999999999986     6899999999


Q ss_pred             eccch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625         98 RLQDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG  172 (612)
Q Consensus        98 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG  172 (612)
                      ++...     ...|+.+|||||++.+++.+||+||+.++....   ..++++.+++++++++.+||.+..++++.+||||
T Consensus        91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGG  167 (366)
T 3tui_C           91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGG  167 (366)
T ss_dssp             ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHH
T ss_pred             ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence            97532     234678999999999999999999999987653   3456677889999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||+|||||+.+|++|||||||||||+.++..++++|+++++ .|+|||++|||++ .+.++||||++|++|++++.|
T Consensus       168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g  246 (366)
T 3tui_C          168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQD  246 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECC
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEc
Confidence            99999999999999999999999999999999999999999976 5999999999976 678899999999999999999


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      +++++.
T Consensus       247 ~~~ev~  252 (366)
T 3tui_C          247 TVSEVF  252 (366)
T ss_dssp             BHHHHH
T ss_pred             CHHHHH
Confidence            988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.1e-51  Score=437.83  Aligned_cols=219  Identities=26%  Similarity=0.405  Sum_probs=202.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++.+|+|||+++++||+++|+||||||||||||+|+|+++|     ++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y----------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~G~I~i~G~~~   67 (381)
T 3rlf_A            3 SVQLQNVTKAW----------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----TSGDLFIGEKRM   67 (381)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             EEEEEeEEEEE----------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-----CCeEEEECCEEC
Confidence            48999999998          567899999999999999999999999999999999999986     689999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      ......++.+|||+|++.++|.+||+||+.|+...+   ..++++.+++++++++.+||++..++++.+|||||||||+|
T Consensus        68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVai  144 (381)
T 3rlf_A           68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI  144 (381)
T ss_dssp             TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHH
Confidence            654445678999999999999999999999987654   34567778899999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.. ++..+||||++|++|+++..|+++++.
T Consensus       145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~  222 (381)
T 3rlf_A          145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY  222 (381)
T ss_dssp             HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence            9999999999999999999999999999999999976 4999999999975 688999999999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=8e-52  Score=436.20  Aligned_cols=219  Identities=26%  Similarity=0.377  Sum_probs=198.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|||+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|+++
T Consensus         4 ~l~i~~ls~~y----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----~~G~I~i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSF----------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-----DSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred             EEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-----CCcEEEECCEEC
Confidence            58999999998          567899999999999999999999999999999999999986     689999999987


Q ss_pred             c----chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhh
Q psy12625        100 Q----DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~----~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq  175 (612)
                      .    .....++.+|||+|++.++|.+||+||+.|+...+   ..++++.+++++++++.+||++..++++.+|||||||
T Consensus        69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q  145 (359)
T 3fvq_A           69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ  145 (359)
T ss_dssp             ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH
T ss_pred             cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence            2    22345678999999999999999999999875432   2345566788999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      ||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||.. ++..+||||++|++|+++..|+++
T Consensus       146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~  224 (359)
T 3fvq_A          146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH  224 (359)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence            99999999999999999999999999999999998888754 7999999999976 688999999999999999999998


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      ++.
T Consensus       225 el~  227 (359)
T 3fvq_A          225 ELY  227 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=3.6e-51  Score=410.17  Aligned_cols=224  Identities=23%  Similarity=0.387  Sum_probs=193.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|..      +...+++|+|||+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         1 ~l~~~~l~~~y~~------~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~   69 (235)
T 3tif_A            1 MVKLKNVTKTYKM------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----TEGEVYIDNIKT   69 (235)
T ss_dssp             CEEEEEEEEEEEE------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             CEEEEEEEEEeCC------CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CceEEEECCEEc
Confidence            3789999999842      11235799999999999999999999999999999999999986     689999999987


Q ss_pred             cch--H---h-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChh
Q psy12625        100 QDH--R---M-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~--~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgG  172 (612)
                      ...  .   . .++.+|||+|++.+++.+||+||+.++...+.....++++..+++.++++.+||.+. .++++.+||||
T Consensus        70 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  149 (235)
T 3tif_A           70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGG  149 (235)
T ss_dssp             TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHH
T ss_pred             ccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHH
Confidence            432  1   1 235699999999999999999999998655422234556667889999999999886 49999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||+.  +.++||++++|++|+++..+
T Consensus       150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~  227 (235)
T 3tif_A          150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE  227 (235)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999999864 999999999975  45899999999999999999


Q ss_pred             CccCh
Q psy12625        252 TVPGL  256 (612)
Q Consensus       252 ~~~~~  256 (612)
                      ++++.
T Consensus       228 ~~~~~  232 (235)
T 3tif_A          228 KLRGF  232 (235)
T ss_dssp             ECC--
T ss_pred             Chhhh
Confidence            88764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=4.9e-51  Score=415.21  Aligned_cols=219  Identities=26%  Similarity=0.413  Sum_probs=196.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++|+|||+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|+++
T Consensus        24 ~l~i~~l~~~y----------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~i   88 (263)
T 2olj_A           24 MIDVHQLKKSF----------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----DEGEIIIDGINL   88 (263)
T ss_dssp             SEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEES
T ss_pred             eEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCEEC
Confidence            59999999988          456799999999999999999999999999999999999986     689999999986


Q ss_pred             c----chHhhccceEEEccCCCCCCCCCHHHHHHHHH-HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 Q----DHRMLRKESCYIMQDNLLQELLTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~----~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      .    +...+++.++||+|++.+++.+||+||+.++. ...   ..++++.+++++++++.+||.+..++++.+||||||
T Consensus        89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqk  165 (263)
T 2olj_A           89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQA  165 (263)
T ss_dssp             SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred             CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence            3    11345678999999999999999999999864 322   234455567899999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCcc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVP  254 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~  254 (612)
                      |||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.|+++
T Consensus       166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~  244 (263)
T 2olj_A          166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE  244 (263)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred             HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999999878999999999975 577899999999999999999887


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      ++.
T Consensus       245 ~~~  247 (263)
T 2olj_A          245 DLF  247 (263)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.9e-51  Score=418.31  Aligned_cols=222  Identities=28%  Similarity=0.397  Sum_probs=196.8

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|.         +.+.+|+|||+++++||+++|+||||||||||+|+|+|+++|     .+|+|.++|++
T Consensus         6 ~~l~i~~ls~~y~---------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----~~G~I~~~G~~   71 (275)
T 3gfo_A            6 YILKVEELNYNYS---------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----SSGRILFDNKP   71 (275)
T ss_dssp             EEEEEEEEEEECT---------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred             cEEEEEEEEEEEC---------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----CCeEEEECCEE
Confidence            3699999999871         234599999999999999999999999999999999999986     68999999998


Q ss_pred             cc--c--hHhhccceEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625         99 LQ--D--HRMLRKESCYIMQDNL-LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        99 ~~--~--~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      +.  .  ...+++.+|||+|++. .+..+||+||+.++....   ..++++.+++++++++.+||++..++++.+|||||
T Consensus        72 i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq  148 (275)
T 3gfo_A           72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQ  148 (275)
T ss_dssp             CCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred             CCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHH
Confidence            73  1  1346788999999863 344789999999986543   34566677889999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      ||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++|||+. .+.++||++++|++|++++.|+
T Consensus       149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~  227 (275)
T 3gfo_A          149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGN  227 (275)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECC
Confidence            999999999999999999999999999999999999999998 56999999999987 5778999999999999999999


Q ss_pred             ccChhh
Q psy12625        253 VPGLVP  258 (612)
Q Consensus       253 ~~~~~~  258 (612)
                      ++++..
T Consensus       228 ~~~~~~  233 (275)
T 3gfo_A          228 PKEVFA  233 (275)
T ss_dssp             HHHHTH
T ss_pred             HHHHhc
Confidence            988754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=6.1e-51  Score=414.92  Aligned_cols=219  Identities=24%  Similarity=0.370  Sum_probs=195.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|||+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~   70 (262)
T 1b0u_A            6 KLHVIDLHKRY----------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQNI   70 (262)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEeeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEc
Confidence            59999999988          556799999999999999999999999999999999999986     689999999986


Q ss_pred             cc------------h---HhhccceEEEccCCCCCCCCCHHHHHHHHH-HhccCCCCCHHHHHHHHHHHHHHcCCccc-c
Q psy12625        100 QD------------H---RMLRKESCYIMQDNLLQELLTVEESLTVAA-HLKLGNQYSRKAKESKVDSIADSLSISTC-K  162 (612)
Q Consensus       100 ~~------------~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~  162 (612)
                      ..            .   ..+++.+|||+|++.+++.+||+||+.++. ...   ..++++.+++++++++.+||.+. .
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~  147 (262)
T 1b0u_A           71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ  147 (262)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence            41            1   234678999999999999999999999864 322   23445556789999999999998 9


Q ss_pred             CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      ++++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|
T Consensus       148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l  226 (262)
T 1b0u_A          148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL  226 (262)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999878999999999975 577899999999


Q ss_pred             cCCeEEEecCccChh
Q psy12625        243 TEGYCTYQGTVPGLV  257 (612)
Q Consensus       243 ~~G~iv~~G~~~~~~  257 (612)
                      ++|+++..|+++++.
T Consensus       227 ~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          227 HQGKIEEEGDPEQVF  241 (262)
T ss_dssp             ETTEEEEEECHHHHH
T ss_pred             ECCEEEEeCCHHHHH
Confidence            999999999887664

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.1e-50  Score=403.65  Aligned_cols=214  Identities=25%  Similarity=0.355  Sum_probs=191.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         4 ~l~~~~l~~~y----------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   68 (224)
T 2pcj_A            4 ILRAENIKKVI----------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-----TEGKVFLEGKEV   68 (224)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             EEEEEeEEEEE----------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            58999999988          456799999999999999999999999999999999999986     689999999987


Q ss_pred             cch--H---hhc-cceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDH--R---MLR-KESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~--~---~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      ...  .   .++ +.++||+|++.+++.+||+||+.++....   ..++++.+++++++++.+||.+..++++++|||||
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  145 (224)
T 2pcj_A           69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGE  145 (224)
T ss_dssp             CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred             CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence            432  1   233 67999999999999999999999876543   23344556789999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||||+|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|||+. .+ ++||++++|++|++++.|+.
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~  223 (224)
T 2pcj_A          146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR  223 (224)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence            99999999999999999999999999999999999999999878999999999965 44 89999999999999998863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-50  Score=410.55  Aligned_cols=220  Identities=26%  Similarity=0.371  Sum_probs=197.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus        15 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~~   79 (256)
T 1vpl_A           15 AVVVKDLRKRI----------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNV   79 (256)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEET
T ss_pred             eEEEEEEEEEE----------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            69999999988          456799999999999999999999999999999999999986     689999999987


Q ss_pred             cc-hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QD-HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      .. ....++.+|||+|++.+++.+||+||+.+.....   ..++++.+++++++++.+||++..++++++|||||||||+
T Consensus        80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~  156 (256)
T 1vpl_A           80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL  156 (256)
T ss_dssp             TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH
T ss_pred             CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence            43 2345678999999999999999999999875443   1234445577899999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||++++|++|++++.|+++++.+
T Consensus       157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            999999999999999999999999999999999999878999999999975 5778899999999999999998877643

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.7e-50  Score=426.20  Aligned_cols=223  Identities=24%  Similarity=0.405  Sum_probs=200.9

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ....|+++||+++|        + +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|
T Consensus        11 ~~~~l~~~~l~~~y--------~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g   76 (355)
T 1z47_A           11 GSMTIEFVGVEKIY--------P-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----TKGDVWIGG   76 (355)
T ss_dssp             CCEEEEEEEEEECC--------T-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETT
T ss_pred             CCceEEEEEEEEEE--------c-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEECC
Confidence            34579999999876        1 346799999999999999999999999999999999999986     689999999


Q ss_pred             EeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         97 TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      +++.+....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++.+||||||||
T Consensus        77 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QR  153 (355)
T 1z47_A           77 KRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR  153 (355)
T ss_dssp             EECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH
T ss_pred             EECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence            997544445678999999999999999999999986543   23456667889999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        177 LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       177 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      |+|||||+.+|++|||||||||||+.++.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus       154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~  232 (355)
T 1z47_A          154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEE  232 (355)
T ss_dssp             HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999976 4999999999975 6789999999999999999999987


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       233 l~  234 (355)
T 1z47_A          233 VY  234 (355)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.4e-50  Score=428.39  Aligned_cols=219  Identities=28%  Similarity=0.411  Sum_probs=198.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i   67 (362)
T 2it1_A            3 EIKLENIVKKF----------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----TSGKIYFDEKDV   67 (362)
T ss_dssp             CEEEEEEEEES----------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             EEEEEeEEEEE----------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----CceEEEECCEEC
Confidence            48999999987          556799999999999999999999999999999999999986     689999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus        68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  144 (362)
T 2it1_A           68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAI  144 (362)
T ss_dssp             TTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             CcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHH
Confidence            543334678999999999999999999999986543   23455667889999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|||||||||||+..+.++.+.|+++++ .|+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus       145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999999999999999976 4999999999975 678999999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-50  Score=428.65  Aligned_cols=219  Identities=25%  Similarity=0.355  Sum_probs=197.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i   67 (359)
T 2yyz_A            3 SIRVVNLKKYF----------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----TSGEIYFDDVLV   67 (359)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             EEEEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-----CccEEEECCEEC
Confidence            48999999988          557799999999999999999999999999999999999986     689999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus        68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRval  144 (359)
T 2yyz_A           68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVAL  144 (359)
T ss_dssp             TTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred             CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence            543334678999999999999999999999875332   23344456789999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|||||||||||+.++.++.+.|+++.+ .|+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus       145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~  222 (359)
T 2yyz_A          145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVY  222 (359)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999999999999999999999976 4999999999975 678999999999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=3e-50  Score=427.93  Aligned_cols=219  Identities=23%  Similarity=0.399  Sum_probs=198.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~~   67 (372)
T 1g29_1            3 GVRLVDVWKVF----------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----SRGQIYIGDKLV   67 (372)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred             EEEEEeEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-----CccEEEECCEEC
Confidence            58999999988          557799999999999999999999999999999999999986     689999999987


Q ss_pred             cc------hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QD------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      .+      ....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++++|||||
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq  144 (372)
T 1g29_1           68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ  144 (372)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred             ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHH
Confidence            44      2234578999999999999999999999986543   23455667889999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      ||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+ .|+|+|++|||+. ++..+||++++|++|+++..|+
T Consensus       145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~  223 (372)
T 1g29_1          145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS  223 (372)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence            9999999999999999999999999999999999999999976 4999999999975 6789999999999999999999


Q ss_pred             ccChh
Q psy12625        253 VPGLV  257 (612)
Q Consensus       253 ~~~~~  257 (612)
                      ++++.
T Consensus       224 ~~~l~  228 (372)
T 1g29_1          224 PDEVY  228 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.4e-50  Score=411.20  Aligned_cols=220  Identities=22%  Similarity=0.321  Sum_probs=194.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|||+++++||+++|+||||||||||+|+|+|+++|     .+|+|.++|+++
T Consensus         7 ~l~i~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~   71 (257)
T 1g6h_A            7 ILRTENIVKYF----------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDI   71 (257)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             EEEEeeeEEEE----------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEEC
Confidence            69999999988          556799999999999999999999999999999999999986     689999999987


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHh-ccCC---------CCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHL-KLGN---------QYSRKAKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      ...   ...++.++||+|++.+++.+||+||+.++... ..+.         ...+.+.+++++++++.+||++..++++
T Consensus        72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  151 (257)
T 1g6h_A           72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA  151 (257)
T ss_dssp             TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred             CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence            432   23466899999999999999999999886432 1110         0122345677899999999999999999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|+
T Consensus       152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~  230 (257)
T 1g6h_A          152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ  230 (257)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence            999999999999999999999999999999999999999999999999888999999999987 5678999999999999


Q ss_pred             EEEecCccC
Q psy12625        247 CTYQGTVPG  255 (612)
Q Consensus       247 iv~~G~~~~  255 (612)
                      +++.|++++
T Consensus       231 i~~~g~~~~  239 (257)
T 1g6h_A          231 IIAEGRGEE  239 (257)
T ss_dssp             EEEEEESHH
T ss_pred             EEEEeCHHH
Confidence            999998887

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.7e-50  Score=427.34  Aligned_cols=219  Identities=25%  Similarity=0.396  Sum_probs=198.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccc--cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKD--ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +|+++||+++|          ++++  +|+|+|+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|+
T Consensus         3 ~l~i~~l~~~y----------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~   67 (353)
T 1oxx_K            3 RIIVKNVSKVF----------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----STGELYFDDR   67 (353)
T ss_dssp             CEEEEEEEEEE----------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----SEEEEEETTE
T ss_pred             EEEEEeEEEEE----------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEECCE
Confidence            48999999988          4566  99999999999999999999999999999999999986     6899999999


Q ss_pred             eccc-----hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh
Q psy12625         98 RLQD-----HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG  172 (612)
Q Consensus        98 ~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG  172 (612)
                      ++.+     ....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++++||||
T Consensus        68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG  144 (353)
T 1oxx_K           68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA  144 (353)
T ss_dssp             EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred             ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence            8743     2345678999999999999999999999875432   2345566788999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||+|||||+.+|++|||||||||||+..+.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|
T Consensus       145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g  223 (353)
T 1oxx_K          145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG  223 (353)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence            99999999999999999999999999999999999999999976 4999999999975 678999999999999999999


Q ss_pred             CccChh
Q psy12625        252 TVPGLV  257 (612)
Q Consensus       252 ~~~~~~  257 (612)
                      +++++.
T Consensus       224 ~~~~l~  229 (353)
T 1oxx_K          224 KPEDLY  229 (353)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.3e-50  Score=411.32  Aligned_cols=218  Identities=25%  Similarity=0.401  Sum_probs=195.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|          +++++|+|||+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|++
T Consensus        10 ~~l~~~~l~~~~----------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~   74 (266)
T 4g1u_C           10 ALLEASHLHYHV----------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-----SHGECHLLGQN   74 (266)
T ss_dssp             CEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-----SSCEEEETTEE
T ss_pred             ceEEEEeEEEEe----------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence            479999999988          567899999999999999999999999999999999999986     58999999999


Q ss_pred             ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      +...  ...++.++|++|++.+++.+||+||+.++....     ...+.+++++++++.+||.+..++++++||||||||
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QR  149 (266)
T 4g1u_C           75 LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQR  149 (266)
T ss_dssp             TTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHH
T ss_pred             CCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence            7542  445678999999999988899999998865332     123346788999999999999999999999999999


Q ss_pred             HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        177 LSIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       177 v~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |+|||||+.      +|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++||++++|++|++++
T Consensus       150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~  228 (266)
T 4g1u_C          150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVA  228 (266)
T ss_dssp             HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEE
Confidence            999999999      99999999999999999999999999999875 679999999976 6788999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       229 ~g~~~~~~  236 (266)
T 4g1u_C          229 CGTPEEVL  236 (266)
T ss_dssp             EECHHHHC
T ss_pred             EcCHHHHh
Confidence            99998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.5e-50  Score=427.91  Aligned_cols=219  Identities=21%  Similarity=0.369  Sum_probs=192.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus        11 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~i~g~~i   75 (372)
T 1v43_A           11 EVKLENLTKRF----------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----TEGRIYFGDRDV   75 (372)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEEEEEEEE----------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CceEEEECCEEC
Confidence            49999999988          556799999999999999999999999999999999999986     689999999997


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||+|++.+++.+||+||+.|+...+   ..++++.+++++++++.+||++..++++++|||||||||+|
T Consensus        76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  152 (372)
T 1v43_A           76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV  152 (372)
T ss_dssp             TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHH
T ss_pred             CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence            543334678999999999999999999999864332   23455667889999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||.. ++..+||++++|++|+++..|+++++.
T Consensus       153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~  230 (372)
T 1v43_A          153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY  230 (372)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999764 999999999975 678999999999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.5e-50  Score=403.47  Aligned_cols=218  Identities=23%  Similarity=0.373  Sum_probs=192.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++
T Consensus         6 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~   70 (240)
T 1ji0_A            6 VLEVQSLHVYY----------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----QKGKIIFNGQDI   70 (240)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEEeEEEEE----------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCceEEECCEEC
Confidence            69999999988          456799999999999999999999999999999999999986     689999999987


Q ss_pred             cch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcC-CccccCcccCCCChhhhh
Q psy12625        100 QDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS-ISTCKNTLTKHLSGGQKK  175 (612)
Q Consensus       100 ~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerq  175 (612)
                      ...  .. .++.++||+|++.+++.+||+||+.++....    ..+++.+++++++++.++ |.+..++++++|||||||
T Consensus        71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~q  146 (240)
T 1ji0_A           71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ  146 (240)
T ss_dssp             TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHH
T ss_pred             CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHH
Confidence            432  22 3456999999999999999999998853211    122344567889999995 999999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccC
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPG  255 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~  255 (612)
                      ||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. ++.++||++++|++|++++.|++++
T Consensus       147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  225 (240)
T 1ji0_A          147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999999999878999999999975 5788999999999999999998876


Q ss_pred             hh
Q psy12625        256 LV  257 (612)
Q Consensus       256 ~~  257 (612)
                      +.
T Consensus       226 ~~  227 (240)
T 1ji0_A          226 LL  227 (240)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=5.8e-50  Score=421.77  Aligned_cols=214  Identities=27%  Similarity=0.401  Sum_probs=193.8

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          +++ +|+|+|+++++||+++|+||||||||||||+|+|+.+|     ++|+|.++|+++.
T Consensus         2 l~~~~l~~~y----------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----~~G~I~~~g~~i~   65 (348)
T 3d31_A            2 IEIESLSRKW----------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----DSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEEC----------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----SEEEEEETTEECT
T ss_pred             EEEEEEEEEE----------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-----CCcEEEECCEECC
Confidence            7899999987          456 99999999999999999999999999999999999986     6899999999975


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +....++.+|||+|++.+++.+||+||+.|+...+.   .++.   ++++++++.+||++..++++++|||||||||+||
T Consensus        66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA  139 (348)
T 3d31_A           66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA  139 (348)
T ss_dssp             TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred             CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence            444456789999999999999999999999865431   1122   6789999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||+.+|++|+|||||||||+.++.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|+++++.
T Consensus       140 raL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999976 5999999999975 678999999999999999999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-49  Score=399.11  Aligned_cols=213  Identities=23%  Similarity=0.367  Sum_probs=189.2

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          ++  +|+|+|+++++ |+++|+||||||||||||+|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~y----------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~   63 (240)
T 2onk_A            2 FLKVRAEKRL----------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADIT   63 (240)
T ss_dssp             CEEEEEEEEE----------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEECT
T ss_pred             EEEEEEEEEe----------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEECCEECC
Confidence            6889999987          33  49999999999 99999999999999999999999986     6899999999875


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      .....++.+|||+|++.+++.+||+||+.++....     .....+++++++++.+||.+..++++++|||||||||+||
T Consensus        64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  138 (240)
T 2onk_A           64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA  138 (240)
T ss_dssp             TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred             cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence            43345678999999999999999999998753221     1122357789999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      |||+.+|++++|||||+|||+.++..+++.|+++++ +|+|||++|||+. ++.++||++++|++|++++.|+++++.
T Consensus       139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999976 4999999999975 578899999999999999999887664

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=3.9e-49  Score=402.57  Aligned_cols=220  Identities=25%  Similarity=0.363  Sum_probs=191.8

Q ss_pred             eEEEEeEEEEEEeeccccccccc---cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKS---KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      +|+++||+++|.        .++   +++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|
T Consensus         2 ~l~~~~l~~~y~--------~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----~~G~I~~~g   68 (266)
T 2yz2_A            2 RIEVVNVSHIFH--------RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----TSGDVLYDG   68 (266)
T ss_dssp             CEEEEEEEEEES--------TTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETT
T ss_pred             EEEEEEEEEEec--------CCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCcEEEECC
Confidence            589999999882        012   5799999999999999999999999999999999999986     689999999


Q ss_pred             EeccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc--cccCcccCCCChhh
Q psy12625         97 TRLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS--TCKNTLTKHLSGGQ  173 (612)
Q Consensus        97 ~~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGe  173 (612)
                      +++... .+++.+|||+|++ ..++.+||+||+.++....    .++++.+++++++++.+||.  +..++++++|||||
T Consensus        69 ~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq  143 (266)
T 2yz2_A           69 ERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGE  143 (266)
T ss_dssp             EECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHH
T ss_pred             EECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHH
Confidence            986543 5677899999995 5667799999998864321    11222346789999999999  89999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||++++|++|++++.|++
T Consensus       144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~  222 (266)
T 2yz2_A          144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTR  222 (266)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999999877999999999987 46778999999999999999988


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      +++..
T Consensus       223 ~~~~~  227 (266)
T 2yz2_A          223 MEFLE  227 (266)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=9.1e-49  Score=396.36  Aligned_cols=219  Identities=25%  Similarity=0.288  Sum_probs=184.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC--CCCCCCCCceeEEEECCE
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY--RRPKKTETNSGYIEINET   97 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~--~~p~~~~~~~G~I~~~g~   97 (612)
                      .|+++||+++|          +++++|+|+|+++++||+++|+||||||||||+|+|+|+  .+|     .+|+|.++|+
T Consensus         3 ~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----~~G~I~~~g~   67 (250)
T 2d2e_A            3 QLEIRDLWASI----------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----ERGEILLDGE   67 (250)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-----EEEEEEETTE
T ss_pred             eEEEEeEEEEE----------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----CceEEEECCE
Confidence            58999999988          456799999999999999999999999999999999998  554     7999999999


Q ss_pred             eccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-ccccCcccCC-CChh
Q psy12625         98 RLQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-STCKNTLTKH-LSGG  172 (612)
Q Consensus        98 ~~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~-LSgG  172 (612)
                      ++...  .. .++.++||+|++.+++.+||+||+.+.............+.+++++++++.+|| .+..++++++ ||||
T Consensus        68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG  147 (250)
T 2d2e_A           68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGG  147 (250)
T ss_dssp             ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----
T ss_pred             ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence            87432  22 245699999999999999999999886532111112233445678999999999 5889999999 9999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G  251 (612)
                      |||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+ ||++++|++|++++.|
T Consensus       148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g  226 (250)
T 2d2e_A          148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATG  226 (250)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEe
Confidence            999999999999999999999999999999999999999999777999999999986 45666 5999999999999999


Q ss_pred             Ccc
Q psy12625        252 TVP  254 (612)
Q Consensus       252 ~~~  254 (612)
                      +++
T Consensus       227 ~~~  229 (250)
T 2d2e_A          227 GPE  229 (250)
T ss_dssp             SHH
T ss_pred             CHH
Confidence            887

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=5.3e-49  Score=403.74  Aligned_cols=224  Identities=24%  Similarity=0.370  Sum_probs=190.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|          +++++|+|||+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|+
T Consensus        19 ~~~l~~~~l~~~y----------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~   83 (279)
T 2ihy_A           19 HMLIQLDQIGRMK----------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----TSGTVNLFGK   83 (279)
T ss_dssp             CEEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTB
T ss_pred             CceEEEEeEEEEE----------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CCeEEEECCE
Confidence            3469999999988          456799999999999999999999999999999999999986     6899999998


Q ss_pred             ecc--c--hHhhccceEEEccCCCCC--CCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCC
Q psy12625         98 RLQ--D--HRMLRKESCYIMQDNLLQ--ELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLS  170 (612)
Q Consensus        98 ~~~--~--~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS  170 (612)
                      ++.  .  ...+++.++||+|++.++  +.+||+||+.++...... .....++.+++++++++.+||++..++++++||
T Consensus        84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS  163 (279)
T 2ihy_A           84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS  163 (279)
T ss_dssp             CCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred             EcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC
Confidence            864  2  234677899999997643  356999999875321000 011123445678999999999999999999999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCchHHHhcccceeeecCCeEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMI--ICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+||  |++|||+. ++.++||++++|++|+++
T Consensus       164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~  242 (279)
T 2ihy_A          164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSI  242 (279)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998779999  99999976 567899999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      +.|+++++.
T Consensus       243 ~~g~~~~~~  251 (279)
T 2ihy_A          243 QQGAVEDIL  251 (279)
T ss_dssp             EEEEHHHHC
T ss_pred             EECCHHHHh
Confidence            999887653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.9e-47  Score=390.16  Aligned_cols=233  Identities=24%  Similarity=0.280  Sum_probs=193.1

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|          +++++|+|||+++++||+++|+||||||||||+|+|+|+.+.   .+.+|+|.++|+
T Consensus        18 ~~~l~~~~l~~~y----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~---~p~~G~I~~~g~   84 (267)
T 2zu0_C           18 SHMLSIKDLHVSV----------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY---EVTGGTVEFKGK   84 (267)
T ss_dssp             --CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC---EEEEEEEEETTE
T ss_pred             CceEEEEeEEEEE----------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCCeEEEECCE
Confidence            3369999999988          457799999999999999999999999999999999998521   137899999999


Q ss_pred             eccch--Hhh-ccceEEEccCCCCCCCCCHHHHHHHHHH-hc--cC-CCCCHHHHHHHHHHHHHHcCCc-cccCcccC-C
Q psy12625         98 RLQDH--RML-RKESCYIMQDNLLQELLTVEESLTVAAH-LK--LG-NQYSRKAKESKVDSIADSLSIS-TCKNTLTK-H  168 (612)
Q Consensus        98 ~~~~~--~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-l~--~~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~  168 (612)
                      ++...  ... ++.++||+|++.+++.+||.||+.+... ..  .. ...++++.+++++++++.+||. +..++++. +
T Consensus        85 ~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~  164 (267)
T 2zu0_C           85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG  164 (267)
T ss_dssp             EGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTT
T ss_pred             ECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence            86432  222 3469999999999999999999987542 21  11 1223444567889999999996 57889987 5


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~i  247 (612)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..+ ||++++|++|++
T Consensus       165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i  243 (267)
T 2zu0_C          165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRI  243 (267)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999777999999999976 45555 899999999999


Q ss_pred             EEecCccChhhHHhhcCC
Q psy12625        248 TYQGTVPGLVPYLSDFGY  265 (612)
Q Consensus       248 v~~G~~~~~~~~f~~~g~  265 (612)
                      ++.|+++++.. ++..|+
T Consensus       244 ~~~g~~~~~~~-~~~~~~  260 (267)
T 2zu0_C          244 VKSGDFTLVKQ-LEEQGY  260 (267)
T ss_dssp             EEEECTTHHHH-HHTTTC
T ss_pred             EEEcCHHHHhh-hhhcch
Confidence            99999876542 344443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.9e-47  Score=387.11  Aligned_cols=210  Identities=23%  Similarity=0.347  Sum_probs=184.9

Q ss_pred             eEEEEeEEEEEEeecccccccc-ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         20 NLLFQDISYSALYYDTHSYSIK-SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .|+++||+++|          + ++++|+|+|+++++||+++|+||||||||||||+|+|+++|     .+|+|.     
T Consensus         4 ~l~i~~l~~~y----------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~-----   63 (253)
T 2nq2_C            4 ALSVENLGFYY----------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-----IQGKIE-----   63 (253)
T ss_dssp             EEEEEEEEEEE----------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-----SEEEEE-----
T ss_pred             eEEEeeEEEEe----------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEE-----
Confidence            58999999988          4 56799999999999999999999999999999999999986     689997     


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGN-QYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                            .++.++||+|++.+++.+||+||+.++....... .....+.+++++++++.+||.+..++++++|||||||||
T Consensus        64 ------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv  137 (253)
T 2nq2_C           64 ------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI  137 (253)
T ss_dssp             ------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred             ------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH
Confidence                  2457999999999999999999998864321110 011234457789999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      +|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            9999999999999999999999999999999999999876 999999999975 5778999999999999 999988765


Q ss_pred             h
Q psy12625        257 V  257 (612)
Q Consensus       257 ~  257 (612)
                      .
T Consensus       216 ~  216 (253)
T 2nq2_C          216 L  216 (253)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.7e-48  Score=396.20  Aligned_cols=220  Identities=23%  Similarity=0.347  Sum_probs=186.1

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.|..       .+++++|+|||+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|++
T Consensus        15 ~~l~~~~l~~~y~~-------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~~   82 (271)
T 2ixe_A           15 GLVKFQDVSFAYPN-------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----TGGKVLLDGEP   82 (271)
T ss_dssp             CCEEEEEEEECCTT-------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred             ceEEEEEEEEEeCC-------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCCEEEECCEE
Confidence            36999999988710       0126799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCC-HH----HHHHHHHHHHHHc--CCccccCcccCCC
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS-RK----AKESKVDSIADSL--SISTCKNTLTKHL  169 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~----~~~~~v~~~l~~l--gL~~~~~~~~~~L  169 (612)
                      +..  ...+++.++||+|++.+++ .||+||+.++....    .. ++    .....++++++.+  |+++..++++.+|
T Consensus        83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L  157 (271)
T 2ixe_A           83 LVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL  157 (271)
T ss_dssp             GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred             cccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence            743  2345678999999999887 59999998753211    11 11    1223456788888  7888899999999


Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++|||+. .+ ..||++++|++|+++
T Consensus       158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~  235 (271)
T 2ixe_A          158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVC  235 (271)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999875 5899999999975 34 469999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      ..|+++++.
T Consensus       236 ~~g~~~~l~  244 (271)
T 2ixe_A          236 EQGTHLQLM  244 (271)
T ss_dssp             EEECHHHHH
T ss_pred             EECCHHHHH
Confidence            999987764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=7.4e-48  Score=399.20  Aligned_cols=214  Identities=26%  Similarity=0.400  Sum_probs=180.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||++.|.         +++.+|+|||+++++||+++|+||||||||||+|+|+|+++|     .+|+|.++|+
T Consensus        51 ~~~i~~~~vs~~y~---------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~G~  116 (306)
T 3nh6_A           51 KGRIEFENVHFSYA---------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-----SSGCIRIDGQ  116 (306)
T ss_dssp             SCCEEEEEEEEESS---------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred             CCeEEEEEEEEEcC---------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----CCcEEEECCE
Confidence            34699999999872         246799999999999999999999999999999999999986     6899999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-----------CCccccCc
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-----------SISTCKNT  164 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-----------gL~~~~~~  164 (612)
                      ++.+.  ..+|+.+|||+|++.+|+ .||+||+.++...     ...    +++++.++..           |++...++
T Consensus       117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~  186 (306)
T 3nh6_A          117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE  186 (306)
T ss_dssp             ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred             EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence            97543  557889999999999986 6999999875321     122    2233333433           44555566


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ...+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ .+. .||+|++|++
T Consensus       187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~-~aD~i~vl~~  263 (306)
T 3nh6_A          187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVV-NADQILVIKD  263 (306)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHH-TCSEEEEEET
T ss_pred             CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHH-cCCEEEEEEC
Confidence            6778999999999999999999999999999999999999999999999864 689999999976 454 5999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |++++.|+++++..
T Consensus       264 G~iv~~G~~~el~~  277 (306)
T 3nh6_A          264 GCIVERGRHEALLS  277 (306)
T ss_dssp             TEEEEEECHHHHHH
T ss_pred             CEEEEECCHHHHHh
Confidence            99999999988754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=3.2e-47  Score=384.22  Aligned_cols=209  Identities=26%  Similarity=0.382  Sum_probs=186.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++              ++|+|+|+++++||+++|+||||||||||||+|+|+++|     . |+|.++|+++
T Consensus         4 ~l~~~~l~~~--------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----~-G~i~~~g~~~   63 (249)
T 2qi9_C            4 VMQLQDVAES--------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-----K-GSIQFAGQPL   63 (249)
T ss_dssp             EEEEEEEEET--------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----E-EEEEETTEEG
T ss_pred             EEEEEceEEE--------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----C-eEEEECCEEC
Confidence            5889998752              589999999999999999999999999999999999985     7 9999999986


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ..  ...+++.++||+|++.+++.+||+||+.++..   . ...    +++++++++.+||++..++++.+|||||||||
T Consensus        64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv  135 (249)
T 2qi9_C           64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRV  135 (249)
T ss_dssp             GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred             CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence            43  24456789999999999999999999987421   1 111    46788999999999999999999999999999


Q ss_pred             HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEe
Q psy12625        178 SIALELLSNPS-------IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       178 ~ia~aL~~~p~-------illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      +|||||+.+|+       +|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|++++.
T Consensus       136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~  214 (249)
T 2qi9_C          136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS  214 (249)
T ss_dssp             HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence            99999999999       99999999999999999999999999877999999999975 56789999999999999999


Q ss_pred             cCccChh
Q psy12625        251 GTVPGLV  257 (612)
Q Consensus       251 G~~~~~~  257 (612)
                      |+++++.
T Consensus       215 g~~~~~~  221 (249)
T 2qi9_C          215 GRREEVL  221 (249)
T ss_dssp             EEHHHHS
T ss_pred             CCHHHHh
Confidence            9887653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=2.8e-47  Score=384.62  Aligned_cols=213  Identities=28%  Similarity=0.420  Sum_probs=180.2

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++++||+++|+        .+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|++
T Consensus         6 ~~~~~~~l~~~y~--------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~i~g~~   72 (247)
T 2ff7_A            6 HDITFRNIRFRYK--------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----ENGQVLIDGHD   72 (247)
T ss_dssp             EEEEEEEEEEESS--------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEE
T ss_pred             CceeEEEEEEEeC--------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEE
Confidence            4799999998861        1246799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc-----------Ccc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK-----------NTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~  165 (612)
                      +..  ...+++.++||+|++.+++ .||+||+.++.    + ...    +++++++++.+|+.+..           +++
T Consensus        73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~  142 (247)
T 2ff7_A           73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ  142 (247)
T ss_dssp             TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred             hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence            753  2345678999999999887 69999998742    1 112    23456666766665443           445


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..||++++|++|
T Consensus       143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G  219 (247)
T 2ff7_A          143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKG  219 (247)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETT
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence            68999999999999999999999999999999999999999999999995 6899999999986 34 569999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+++++.
T Consensus       220 ~i~~~g~~~~l~  231 (247)
T 2ff7_A          220 KIVEQGKHKELL  231 (247)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEECCHHHHH
Confidence            999999887663

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=4e-47  Score=374.82  Aligned_cols=203  Identities=20%  Similarity=0.306  Sum_probs=178.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..|+++||+++|          ++ ++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+
T Consensus         8 ~~~l~~~~ls~~y----------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g~   71 (214)
T 1sgw_A            8 GSKLEIRDLSVGY----------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----LKGEIIYNGV   71 (214)
T ss_dssp             -CEEEEEEEEEES----------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred             CceEEEEEEEEEe----------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCeEEEECCE
Confidence            4579999999987          44 799999999999999999999999999999999999986     6899999999


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                      ++.   ..++.++||+|++.+++.+||+||+.++.....   .. .+ +++++++++.+||++. ++++.+|||||||||
T Consensus        72 ~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv  142 (214)
T 1sgw_A           72 PIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRV  142 (214)
T ss_dssp             EGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH
T ss_pred             Ehh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH
Confidence            864   357789999999999999999999998754421   11 12 4678899999999988 999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      +|||||+.+|++++|||||+|||+.++..+++.|++++++|+|||++|||+. .+..++|++++++ |++
T Consensus       143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~-~~~  210 (214)
T 1sgw_A          143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS-TKI  210 (214)
T ss_dssp             HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred             HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence            9999999999999999999999999999999999999877899999999987 5778889988664 443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.3e-46  Score=380.81  Aligned_cols=212  Identities=23%  Similarity=0.247  Sum_probs=184.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|..      ..+.+++|+|+|++++ ||+++|+||||||||||||+|+|+. |     .+|+|.++|+++
T Consensus         1 ml~~~~l~~~y~~------~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----~~G~I~~~g~~~   67 (263)
T 2pjz_A            1 MIQLKNVGITLSG------KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----YSGNIFINGMEV   67 (263)
T ss_dssp             CEEEEEEEEEEEE------ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----CEEEEEETTEEG
T ss_pred             CEEEEEEEEEeCC------CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----CCcEEEECCEEC
Confidence            3789999999831      0012679999999999 9999999999999999999999999 7     589999999986


Q ss_pred             cchHhhccceE-EEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhhHH
Q psy12625        100 QDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus       100 ~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv  177 (612)
                      ..... ++.++ |++|++.+  .+||+||+.+.....   ..    .+++++++++.+||+ +..++++++|||||||||
T Consensus        68 ~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv  137 (263)
T 2pjz_A           68 RKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV  137 (263)
T ss_dssp             GGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred             cchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence            43222 66899 99999887  799999999875432   11    245688999999999 999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc-ceeeecCCeEEEecCccCh
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD-YLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~  256 (612)
                      +|||||+.+|++++|||||+|||+.++..+.+.|+++++   |||++|||+. .+.++|| ++++|++|++++.|+++++
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l  213 (263)
T 2pjz_A          138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSEL  213 (263)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999999999999998854   9999999976 5678999 9999999999999998876


Q ss_pred             hh
Q psy12625        257 VP  258 (612)
Q Consensus       257 ~~  258 (612)
                      .+
T Consensus       214 ~~  215 (263)
T 2pjz_A          214 LE  215 (263)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=8.8e-47  Score=380.27  Aligned_cols=211  Identities=28%  Similarity=0.449  Sum_probs=180.5

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|        + +++++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|+++.
T Consensus         2 l~~~~l~~~y--------~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~   67 (243)
T 1mv5_A            2 LSARHVDFAY--------D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----TAGEITIDGQPID   67 (243)
T ss_dssp             EEEEEEEECS--------S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----SBSCEEETTEEST
T ss_pred             EEEEEEEEEe--------C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCcEEEECCEEhh
Confidence            7899999876        1 346799999999999999999999999999999999999986     6899999999874


Q ss_pred             ch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc-----------ccC
Q psy12625        101 DH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT-----------LTK  167 (612)
Q Consensus       101 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~  167 (612)
                      ..  ..+++.++||+|++.+++ .||+||+.++..   + ...    +++++++++.+|+.+..++           ++.
T Consensus        68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~  138 (243)
T 1mv5_A           68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGV  138 (243)
T ss_dssp             TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred             hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcC
Confidence            32  345678999999999887 599999976421   1 112    2457788888888766544           457


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      +|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++|||+. .+ ..||++++|++|++
T Consensus       139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i  215 (243)
T 1mv5_A          139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQI  215 (243)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEE
Confidence            899999999999999999999999999999999999999999999997 6999999999975 44 56999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      +..|+++++.
T Consensus       216 ~~~g~~~~~~  225 (243)
T 1mv5_A          216 TGSGKHNELV  225 (243)
T ss_dssp             CCCSCHHHHH
T ss_pred             EEeCCHHHHH
Confidence            9999887664

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.2e-45  Score=375.37  Aligned_cols=213  Identities=24%  Similarity=0.367  Sum_probs=178.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|..       ...+++|+|+|+++++||+++|+||||||||||+|+|+|+++|      +|+|.++|++
T Consensus        16 ~~l~i~~l~~~y~~-------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~G~I~i~g~~   82 (260)
T 2ghi_A           16 VNIEFSDVNFSYPK-------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA------EGDIKIGGKN   82 (260)
T ss_dssp             CCEEEEEEEECCTT-------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC------EEEEEETTEE
T ss_pred             CeEEEEEEEEEeCC-------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------CeEEEECCEE
Confidence            36999999998721       0125699999999999999999999999999999999999863      6999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~  165 (612)
                      +..  ...+++.++||+|++.+++ .||+||+.++.   .  ...    ++++.+.++.+++.+.           .+++
T Consensus        83 i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~---~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~  152 (260)
T 2ghi_A           83 VNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK---L--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK  152 (260)
T ss_dssp             GGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC---T--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS
T ss_pred             hhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC---C--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC
Confidence            743  2446788999999999886 69999998742   1  111    2345667777776543           2456


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++|||+.. + ..||++++|++|
T Consensus       153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G  229 (260)
T 2ghi_A          153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKG  229 (260)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETT
T ss_pred             cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECC
Confidence            789999999999999999999999999999999999999999999999965 8999999999863 4 569999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      +++..|+++++.
T Consensus       230 ~i~~~g~~~~l~  241 (260)
T 2ghi_A          230 KIVEKGTHKDLL  241 (260)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEECCHHHHH
Confidence            999999987764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=394.06  Aligned_cols=213  Identities=21%  Similarity=0.254  Sum_probs=186.4

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|.        .+++.+|+|||+++++||+++|+||||||||||||+|+|+.+      .+|+|.++|+
T Consensus        17 ~~~i~~~~l~~~y~--------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~   82 (390)
T 3gd7_A           17 GGQMTVKDLTAKYT--------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGV   82 (390)
T ss_dssp             SCCEEEEEEEEESS--------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSC
T ss_pred             CCeEEEEEEEEEec--------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCE
Confidence            45799999999872        245789999999999999999999999999999999999975      5799999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCC-------
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKH-------  168 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~-------  168 (612)
                      ++.+.  ..+++.++||+|++.+|+ +||+||+.+.      ...    .+++++++++.+||.+..++++.+       
T Consensus        83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~------~~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~  151 (390)
T 3gd7_A           83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN------AAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVD  151 (390)
T ss_dssp             BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT------CCS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred             ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhc------ccc----CHHHHHHHHHHhCCHHHHhhccccccccccc
Confidence            87542  446788999999999998 6999998531      111    235678899999999999999988       


Q ss_pred             ----CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        169 ----LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       169 ----LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                          |||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++. +++|+|++|||..  ....||||++|++
T Consensus       152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~  228 (390)
T 3gd7_A          152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE  228 (390)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence                99999999999999999999999999999999999999999999864 5799999999974  3567999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |+++..|+++++..
T Consensus       229 G~i~~~g~~~el~~  242 (390)
T 3gd7_A          229 NKVRQYDSILELYH  242 (390)
T ss_dssp             TEEEEESSHHHHHH
T ss_pred             CEEEEECCHHHHHh
Confidence            99999999988743

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.3e-44  Score=361.22  Aligned_cols=200  Identities=23%  Similarity=0.331  Sum_probs=166.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|        +.+++++|+|+|+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|   
T Consensus         6 ~l~~~~l~~~y--------~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g---   69 (229)
T 2pze_A            6 EVVMENVTAFW--------EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG---   69 (229)
T ss_dssp             EEEEEEEEECS--------STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEECS---
T ss_pred             eEEEEEEEEEe--------CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CccEEEECC---
Confidence            69999999876        22356799999999999999999999999999999999999986     689999998   


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcccCC
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLTKH  168 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~  168 (612)
                              .++|++|++.+++. ||+||+.++..      ...    .+.++.++.+++.+.           .++++.+
T Consensus        70 --------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  130 (229)
T 2pze_A           70 --------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT  130 (229)
T ss_dssp             --------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTT
T ss_pred             --------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCc
Confidence                    38999999999885 99999987421      111    123334444554432           2334679


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      |||||||||+|||||+.+|++++|||||+|||+.++..+++. +++++ +|+|||++|||+. .+ ..||++++|++|++
T Consensus       131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i  207 (229)
T 2pze_A          131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSS  207 (229)
T ss_dssp             SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999997 45654 4899999999975 44 46999999999999


Q ss_pred             EEecCccChh
Q psy12625        248 TYQGTVPGLV  257 (612)
Q Consensus       248 v~~G~~~~~~  257 (612)
                      ++.|+++++.
T Consensus       208 ~~~g~~~~~~  217 (229)
T 2pze_A          208 YFYGTFSELQ  217 (229)
T ss_dssp             EEEECHHHHH
T ss_pred             EEECCHHHHH
Confidence            9999887664

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=361.72  Aligned_cols=203  Identities=22%  Similarity=0.301  Sum_probs=166.3

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|.        .+++++|+|+|+++++||+++|+||||||||||||+|+|+++|     .+|+|.++|   
T Consensus         3 ~l~~~~l~~~y~--------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g---   66 (237)
T 2cbz_A            3 SITVRNATFTWA--------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVAIKG---   66 (237)
T ss_dssp             CEEEEEEEEESC--------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-----EEEEEEECS---
T ss_pred             eEEEEEEEEEeC--------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECC---
Confidence            489999999871        1246799999999999999999999999999999999999986     689999998   


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHH---HHHHcCCc-----cccCcccCCCCh
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDS---IADSLSIS-----TCKNTLTKHLSG  171 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~-----~~~~~~~~~LSg  171 (612)
                              .++||+|++.+ +.+||+||+.++...      .++ ..+++.+   +.+.+++.     ...++++.+|||
T Consensus        67 --------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSg  130 (237)
T 2cbz_A           67 --------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG  130 (237)
T ss_dssp             --------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCH
T ss_pred             --------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-HHHHHHHHHhhHHHHHhccccccccccCCCCCCCH
Confidence                    38999999865 578999999875311      111 1111111   22233332     235778899999


Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR---DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||+|||||+.+|++++|||||+|||+.++..+++.|+   +++ +|+|||++|||++. + ..||++++|++|+++
T Consensus       131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~  207 (237)
T 2cbz_A          131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKIS  207 (237)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEE
Confidence            99999999999999999999999999999999999999995   443 58999999999864 4 579999999999999


Q ss_pred             EecCccChh
Q psy12625        249 YQGTVPGLV  257 (612)
Q Consensus       249 ~~G~~~~~~  257 (612)
                      ..|+++++.
T Consensus       208 ~~g~~~~~~  216 (237)
T 2cbz_A          208 EMGSYQELL  216 (237)
T ss_dssp             EEECHHHHH
T ss_pred             EeCCHHHHh
Confidence            999987764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-44  Score=407.57  Aligned_cols=219  Identities=23%  Similarity=0.367  Sum_probs=183.5

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|++++|+        .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||+
T Consensus       339 ~~~i~~~~v~~~y~--------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~i~g~  405 (587)
T 3qf4_A          339 EGSVSFENVEFRYF--------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-----ERGRVEVDEL  405 (587)
T ss_dssp             CCCEEEEEEEECSS--------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-----SEEEEEESSS
T ss_pred             CCcEEEEEEEEEcC--------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEECCE
Confidence            34799999999872        2456799999999999999999999999999999999999986     6899999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHc--CCccccCcccCC
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES-----KVDSIADSL--SISTCKNTLTKH  168 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~  168 (612)
                      ++.+.  +.+|++++||+|++.+++. ||+||+.++..     ..++++..+     .+.+.++.+  |++...+++..+
T Consensus       406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~  479 (587)
T 3qf4_A          406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN  479 (587)
T ss_dssp             BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred             EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence            97543  5578899999999999975 99999976421     122222111     122333433  566667778889


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||++|||||+.+|++++||||||+||+.++.++.+.|+++. +|+|+|+++|+++ . ...||+|++|++|+++
T Consensus       480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~  556 (587)
T 3qf4_A          480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVA  556 (587)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEE
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999985 5899999999986 3 4689999999999999


Q ss_pred             EecCccChhh
Q psy12625        249 YQGTVPGLVP  258 (612)
Q Consensus       249 ~~G~~~~~~~  258 (612)
                      +.|+++++.+
T Consensus       557 ~~g~~~el~~  566 (587)
T 3qf4_A          557 GFGTHKELLE  566 (587)
T ss_dssp             EEECHHHHHH
T ss_pred             EECCHHHHHh
Confidence            9999988754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=3.4e-44  Score=404.38  Aligned_cols=215  Identities=28%  Similarity=0.371  Sum_probs=180.9

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|++++|+        .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||+
T Consensus       337 ~~~i~~~~v~~~y~--------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~  403 (578)
T 4a82_A          337 QGRIDIDHVSFQYN--------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----TSGQILIDGH  403 (578)
T ss_dssp             SCCEEEEEEEECSC--------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----SEEEEEETTE
T ss_pred             CCeEEEEEEEEEcC--------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCcEEEECCE
Confidence            34799999999873        2456799999999999999999999999999999999999986     6899999999


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----------ccccCc
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNT  164 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~  164 (612)
                      ++.+  .+.+|+.++||+|++.+++. ||+||+.++.    + ..++    +++.+.++..++           +...++
T Consensus       404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~  473 (578)
T 4a82_A          404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE  473 (578)
T ss_dssp             EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred             EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence            9754  25578899999999999975 9999998752    1 1122    334455555544           333444


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +..+||||||||++|||||+.+|++++|||||||||+.++..+.+.++++. +++|+|+++|+++. + +.||++++|++
T Consensus       474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~  550 (578)
T 4a82_A          474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN  550 (578)
T ss_dssp             GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred             CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence            556899999999999999999999999999999999999999999999885 47899999999874 4 66999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |++++.|+++++.+
T Consensus       551 G~i~~~g~~~el~~  564 (578)
T 4a82_A          551 GHIVETGTHRELIA  564 (578)
T ss_dssp             TEEEEEECHHHHHH
T ss_pred             CEEEEECCHHHHHh
Confidence            99999999988753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.7e-43  Score=399.20  Aligned_cols=214  Identities=24%  Similarity=0.376  Sum_probs=182.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.        +++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||++
T Consensus       340 ~~i~~~~v~~~y~~--------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~~  406 (582)
T 3b5x_A          340 GEVDVKDVTFTYQG--------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-----DSGSICLDGHD  406 (582)
T ss_pred             CeEEEEEEEEEcCC--------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCCEEEECCEE
Confidence            46999999999821        236799999999999999999999999999999999999986     68999999998


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-----------cc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-----------TL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~  165 (612)
                      +.+  ...+|+.++||+|++.+++ .||+||+.++..   + ..+    +++++++++.+|+.+..+           +.
T Consensus       407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~  477 (582)
T 3b5x_A          407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN  477 (582)
T ss_pred             hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence            753  3457889999999999987 599999987531   1 112    345667777776655433           34


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++|
T Consensus       478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G  554 (582)
T 3b5x_A          478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEG  554 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence            568999999999999999999999999999999999999999999999864 899999999986 34 579999999999


Q ss_pred             eEEEecCccChh
Q psy12625        246 YCTYQGTVPGLV  257 (612)
Q Consensus       246 ~iv~~G~~~~~~  257 (612)
                      ++++.|+++++.
T Consensus       555 ~i~~~g~~~~l~  566 (582)
T 3b5x_A          555 EIIERGRHADLL  566 (582)
T ss_pred             EEEEECCHHHHH
Confidence            999999988764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2e-43  Score=398.50  Aligned_cols=215  Identities=23%  Similarity=0.354  Sum_probs=182.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+        .+++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||++
T Consensus       340 ~~i~~~~v~~~y~--------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----~~G~i~~~g~~  406 (582)
T 3b60_A          340 GDLEFRNVTFTYP--------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----DEGHILMDGHD  406 (582)
T ss_dssp             CCEEEEEEEECSS--------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----SEEEEEETTEE
T ss_pred             CcEEEEEEEEEcC--------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-----CCCeEEECCEE
Confidence            4699999999872        1236799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcc
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTL  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~  165 (612)
                      +.+  ...+|+.++||+|++.+++ .||+||+.++..   + ..+    +++++++++.+|+.+.           .++.
T Consensus       407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~  477 (582)
T 3b60_A          407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN  477 (582)
T ss_dssp             TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred             ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence            754  2457789999999999987 499999987531   1 122    2446667777766543           3445


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|
T Consensus       478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G  554 (582)
T 3b60_A          478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDG  554 (582)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETT
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECC
Confidence            578999999999999999999999999999999999999999999999975 8999999999863 3 679999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+++++.+
T Consensus       555 ~i~~~g~~~~l~~  567 (582)
T 3b60_A          555 IIVERGTHSELLA  567 (582)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEecCHHHHHH
Confidence            9999999887753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-43  Score=401.32  Aligned_cols=214  Identities=25%  Similarity=0.380  Sum_probs=180.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|.         +++++|+|+|+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||+
T Consensus       352 ~~~i~~~~v~~~y~---------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----~~G~i~~~g~  417 (598)
T 3qf4_B          352 RGEIEFKNVWFSYD---------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGI  417 (598)
T ss_dssp             CCCEEEEEEECCSS---------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred             CCeEEEEEEEEECC---------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CCeEEEECCE
Confidence            34699999999872         246799999999999999999999999999999999999986     6899999999


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccC-----------c
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKN-----------T  164 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~  164 (612)
                      ++.+  ...+|+.++||+|++.+++ .||+||+.++..     ..++    +++++.++..++.+..+           +
T Consensus       418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~  487 (598)
T 3qf4_B          418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD  487 (598)
T ss_dssp             EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred             EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence            9754  3567889999999999986 599999987421     1121    23445555555544333           3


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ...+||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++
T Consensus       488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~  564 (598)
T 3qf4_B          488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD  564 (598)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence            346899999999999999999999999999999999999999999999986 58999999999874 4 55999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |++++.|+++++.+
T Consensus       565 G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          565 GEIVEMGKHDELIQ  578 (598)
T ss_dssp             SSEEECSCHHHHHH
T ss_pred             CEEEEECCHHHHHh
Confidence            99999999988753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=7.4e-42  Score=352.26  Aligned_cols=196  Identities=24%  Similarity=0.355  Sum_probs=152.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||++.            .+++|+|+|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.++|  
T Consensus        39 ~~l~~~~l~~~------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~~g--   99 (290)
T 2bbs_A           39 DSLSFSNFSLL------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----SEGKIKHSG--   99 (290)
T ss_dssp             -----------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-----EEEEEECCS--
T ss_pred             ceEEEEEEEEc------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCcEEEECC--
Confidence            35889999873            24699999999999999999999999999999999999986     689999987  


Q ss_pred             ccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-----------cCcccC
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-----------KNTLTK  167 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~  167 (612)
                               .++||+|++.+++. ||+||+. +.  .    ...    .++++.++.+++.+.           .++.++
T Consensus       100 ---------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  158 (290)
T 2bbs_A          100 ---------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGI  158 (290)
T ss_dssp             ---------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----C
T ss_pred             ---------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccC
Confidence                     38999999998885 9999997 31  1    111    123344555555432           233457


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL-RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      +||||||||++|||||+.+|++++|||||+|||+.++..+++.+ ++++ +|+|||++|||+. .+ ..||++++|++|+
T Consensus       159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~  235 (290)
T 2bbs_A          159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGS  235 (290)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTE
T ss_pred             cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCe
Confidence            99999999999999999999999999999999999999999974 5554 5899999999975 44 5699999999999


Q ss_pred             EEEecCccChh
Q psy12625        247 CTYQGTVPGLV  257 (612)
Q Consensus       247 iv~~G~~~~~~  257 (612)
                      ++..|+++++.
T Consensus       236 i~~~g~~~~l~  246 (290)
T 2bbs_A          236 SYFYGTFSELQ  246 (290)
T ss_dssp             EEEEECHHHHH
T ss_pred             EEEeCCHHHHh
Confidence            99999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.2e-41  Score=408.25  Aligned_cols=218  Identities=24%  Similarity=0.357  Sum_probs=185.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|+.       ..+.++|+|+|++|+|||.+||+||||||||||+++|.|+++|     .+|+|.+||.
T Consensus      1074 ~g~I~f~nVsf~Y~~-------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~iDG~ 1141 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPE-------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-----LGGEIFIDGS 1141 (1321)
T ss_dssp             CCCEEEEEEEECCTT-------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-----SSSEEEETTE
T ss_pred             CCeEEEEEEEEeCCC-------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-----CCCEEEECCE
Confidence            347999999998832       1346799999999999999999999999999999999999986     6899999999


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-------ccCcccC-
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-------CKNTLTK-  167 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~~-  167 (612)
                      ++.+  .+.+|++++|||||+.+|+ -|++||+.++..   +.+.+    ++.+.++++..++.+       -.|+.++ 
T Consensus      1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A         1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp             ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred             EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence            9865  3678999999999999997 599999976521   11223    345666677766643       2345544 


Q ss_pred             ---CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        168 ---HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       168 ---~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                         +||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|.++.  ...||+|+||++
T Consensus      1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~ 1290 (1321)
T 4f4c_A         1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN 1290 (1321)
T ss_dssp             TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS
T ss_pred             CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC
Confidence               699999999999999999999999999999999999999999998765 57999999999874  578999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |+++++|+++++.+
T Consensus      1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             SSEEEEECHHHHHH
T ss_pred             CEEEEECCHHHHHh
Confidence            99999999998875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=4.1e-40  Score=401.05  Aligned_cols=216  Identities=25%  Similarity=0.373  Sum_probs=183.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++|++|+|+.       ..++++|+|+|+++++||.+||+||||||||||+++|.|+++|     .+|+|.+||+
T Consensus       413 ~g~I~~~nvsF~Y~~-------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-----~~G~I~idG~  480 (1321)
T 4f4c_A          413 KGDITVENVHFTYPS-------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-----LKGKITIDGV  480 (1321)
T ss_dssp             CCCEEEEEEEECCSS-------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred             CCcEEEEEeeeeCCC-------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-----ccCcccCCCc
Confidence            347999999999842       2457899999999999999999999999999999999999986     6999999999


Q ss_pred             eccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-------ccCccc--
Q psy12625         98 RLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-------CKNTLT--  166 (612)
Q Consensus        98 ~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~--  166 (612)
                      ++.+.  +.+|+++|||+|++.+|. -|++||+.|+..     ..+    ++++.++++..++.+       -.|+.+  
T Consensus       481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe  550 (1321)
T 4f4c_A          481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGD  550 (1321)
T ss_dssp             ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred             cchhccHHHHhhcccccCCcceeeC-CchhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence            98653  668899999999999987 699999988621     122    344556666655432       234444  


Q ss_pred             --CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        167 --KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       167 --~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                        .+||||||||++||||+++||+|++||||||+||+.+...+.+.|+++. +|+|+|+++|+++.  .+.||+|++|++
T Consensus       551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~~  627 (1321)
T 4f4c_A          551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCKN  627 (1321)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEET
T ss_pred             CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEeeC
Confidence              4699999999999999999999999999999999999999999999876 48999999999873  688999999999


Q ss_pred             CeEEEecCccChhh
Q psy12625        245 GYCTYQGTVPGLVP  258 (612)
Q Consensus       245 G~iv~~G~~~~~~~  258 (612)
                      |+++++|+.+++.+
T Consensus       628 G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          628 GQVVEVGDHRALMA  641 (1321)
T ss_dssp             TEEEEEECHHHHHT
T ss_pred             CeeeccCCHHHHHH
Confidence            99999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=5.5e-40  Score=398.97  Aligned_cols=220  Identities=26%  Similarity=0.349  Sum_probs=180.8

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|+.       ..++++|+|+|+++++||++||+||||||||||+++|+|+++|     .+|+|.+||+
T Consensus       385 ~g~i~~~~v~~~y~~-------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-----~~G~i~i~g~  452 (1284)
T 3g5u_A          385 QGNLEFKNIHFSYPS-------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----LDGMVSIDGQ  452 (1284)
T ss_dssp             CCCEEEEEEEECCSS-------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-----SEEEEEETTE
T ss_pred             CCeEEEEEEEEEcCC-------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEECCE
Confidence            346999999998832       1235799999999999999999999999999999999999986     6899999999


Q ss_pred             eccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccCC
Q psy12625         98 RLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTKH  168 (612)
Q Consensus        98 ~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~  168 (612)
                      ++.+  .+.+|+.+|||+|++.+++. ||+||+.++..     ..+.++..+.     +.+.++.+  |++...++...+
T Consensus       453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~  526 (1284)
T 3g5u_A          453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ  526 (1284)
T ss_dssp             EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred             EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCc
Confidence            9754  35678889999999999975 99999998631     1222222111     22334443  334444556668


Q ss_pred             CChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        169 LSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       169 LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      ||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ ..||+|++|++|+++
T Consensus       527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~  603 (1284)
T 3g5u_A          527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIV  603 (1284)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCC
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999998875 5899999999976 34 569999999999999


Q ss_pred             EecCccChhh
Q psy12625        249 YQGTVPGLVP  258 (612)
Q Consensus       249 ~~G~~~~~~~  258 (612)
                      +.|+++++.+
T Consensus       604 ~~g~~~~l~~  613 (1284)
T 3g5u_A          604 EQGNHDELMR  613 (1284)
T ss_dssp             CEECHHHHHH
T ss_pred             EECCHHHHHh
Confidence            9999988753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.4e-39  Score=391.05  Aligned_cols=217  Identities=24%  Similarity=0.371  Sum_probs=178.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++||+++|+.       ..++++|+|+|+++++||++||+||||||||||+++|+|+.+|     .+|+|.+||++
T Consensus      1029 g~i~~~~v~~~y~~-------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----~~G~I~i~g~~ 1096 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPT-------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-----MAGSVFLDGKE 1096 (1284)
T ss_dssp             CCEEEEEEEBCCSC-------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-----SEEEEESSSSC
T ss_pred             CcEEEEEEEEECCC-------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----CCCEEEECCEE
Confidence            46999999998832       1235799999999999999999999999999999999999986     68999999999


Q ss_pred             ccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-------cCc----c
Q psy12625         99 LQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-------KNT----L  165 (612)
Q Consensus        99 ~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~  165 (612)
                      +.+  .+.+|+.++||||++.+++ .||+||+.++...   ...++    +.+.+.++..++.+.       .|+    .
T Consensus      1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A         1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp             TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred             cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence            754  3567889999999998875 7999999764211   11222    223344444444322       233    3


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ..+||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++ .+|+|+|+++|+++. + ..||||++|++|
T Consensus      1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A         1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNG 1245 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETB
T ss_pred             CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence            4579999999999999999999999999999999999999999999885 468999999999874 4 669999999999


Q ss_pred             eEEEecCccChhh
Q psy12625        246 YCTYQGTVPGLVP  258 (612)
Q Consensus       246 ~iv~~G~~~~~~~  258 (612)
                      ++++.|+++++.+
T Consensus      1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEECCHHHHHh
Confidence            9999999987754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=2.2e-38  Score=356.86  Aligned_cols=206  Identities=24%  Similarity=0.253  Sum_probs=179.2

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|+++.|          ++ ..|+++|+++++||+++|+||||||||||||+|+|+.+|     .+|+|.+   
T Consensus       355 ~~~l~~~~l~~~~----------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~I~~---  415 (607)
T 3bk7_A          355 ETLVEYPRLVKDY----------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKVEW---  415 (607)
T ss_dssp             CEEEEECCEEEEC----------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-----SBSCCCC---
T ss_pred             ceEEEEeceEEEe----------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CceEEEE---
Confidence            3579999999876          33 368999999999999999999999999999999999986     5788865   


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                              +..++|++|+....+.+||.|++.......       ....++++++++.+|+.+..++++++|||||||||
T Consensus       416 --------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv  480 (607)
T 3bk7_A          416 --------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV  480 (607)
T ss_dssp             --------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHH
T ss_pred             --------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence                    246999999988878899999886531111       01235678999999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP  254 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~  254 (612)
                      +|||+|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++||.. .+..+|||+++|++  |+++..|+++
T Consensus       481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~  559 (607)
T 3bk7_A          481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPM  559 (607)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHH
Confidence            999999999999999999999999999999999999975 6999999999975 67889999999986  8888999998


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++.+
T Consensus       560 ~~~~  563 (607)
T 3bk7_A          560 GMRE  563 (607)
T ss_dssp             EHHH
T ss_pred             HHHh
Confidence            8765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=2.3e-38  Score=353.05  Aligned_cols=206  Identities=25%  Similarity=0.266  Sum_probs=178.7

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|+++.|          ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.+   
T Consensus       285 ~~~l~~~~l~~~~----------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----~~G~i~~---  345 (538)
T 1yqt_A          285 ETLVTYPRLVKDY----------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEW---  345 (538)
T ss_dssp             CEEEEECCEEEEE----------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-----SBCCCCC---
T ss_pred             CeEEEEeeEEEEE----------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCeEEEE---
Confidence            3579999999876          33 368999999999999999999999999999999999986     5788864   


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                              ...++||+|+....+.+||.|++........       ..+++++++++.+|+.+..++++++|||||||||
T Consensus       346 --------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv  410 (538)
T 1yqt_A          346 --------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRV  410 (538)
T ss_dssp             --------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHH
T ss_pred             --------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence                    2359999999887788999998765311111       1135678899999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP  254 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~  254 (612)
                      +|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++||.. .+..+|||+++|++  |+++..|+++
T Consensus       411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~  489 (538)
T 1yqt_A          411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPM  489 (538)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHH
Confidence            999999999999999999999999999999999999975 6999999999975 67889999999986  7888999998


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++..
T Consensus       490 ~~~~  493 (538)
T 1yqt_A          490 GMRE  493 (538)
T ss_dssp             EHHH
T ss_pred             HHHh
Confidence            8765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-37  Score=346.60  Aligned_cols=208  Identities=21%  Similarity=0.210  Sum_probs=176.5

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...++++|+++.+          ++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.+++ 
T Consensus       267 ~~~l~~~~l~~~~----------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~-  329 (538)
T 3ozx_A          267 KTKMKWTKIIKKL----------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-----DEGSVTPEK-  329 (538)
T ss_dssp             CEEEEECCEEEEE----------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----SBCCEESSC-
T ss_pred             cceEEEcceEEEE----------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECC-
Confidence            3568899999876          32 357888999999999999999999999999999999986     689998764 


Q ss_pred             eccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL  177 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv  177 (612)
                               +.++|++|+.......||+||+......    ...  .....++++++.+||.+..++++++|||||||||
T Consensus       330 ---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv  394 (538)
T 3ozx_A          330 ---------QILSYKPQRIFPNYDGTVQQYLENASKD----ALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKL  394 (538)
T ss_dssp             ---------CCEEEECSSCCCCCSSBHHHHHHHHCSS----TTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHH
T ss_pred             ---------eeeEeechhcccccCCCHHHHHHHhhhh----ccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence                     3489999987777789999999874211    111  1234578899999999999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCcc
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVP  254 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~  254 (612)
                      +|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++||.. ++..+||||++|++  |.....+++.
T Consensus       395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~  473 (538)
T 3ozx_A          395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPV  473 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChH
Confidence            999999999999999999999999999999999999986 6999999999976 68889999999986  5666777776


Q ss_pred             Chhh
Q psy12625        255 GLVP  258 (612)
Q Consensus       255 ~~~~  258 (612)
                      ++..
T Consensus       474 ~~~~  477 (538)
T 3ozx_A          474 TLKT  477 (538)
T ss_dssp             EHHH
T ss_pred             HHHH
Confidence            6543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=339.92  Aligned_cols=192  Identities=22%  Similarity=0.255  Sum_probs=165.0

Q ss_pred             cccccceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC
Q psy12625         43 KDILKDISGVFVSK-----ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL  117 (612)
Q Consensus        43 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~  117 (612)
                      +.+++|+|+++++|     |+++|+||||||||||+|+|+|+.+|     .+|+.      +.     +..++|++|+..
T Consensus       360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----~~G~~------~~-----~~~i~~~~q~~~  423 (608)
T 3j16_B          360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----DEGQD------IP-----KLNVSMKPQKIA  423 (608)
T ss_dssp             EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----SBCCC------CC-----SCCEEEECSSCC
T ss_pred             ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----CCCcC------cc-----CCcEEEeccccc
Confidence            45789999999999     78999999999999999999999987     45641      11     346999999977


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                      .....||+|++...  .+.  ...   ..+.++++++.+||.+..++++.+|||||||||+|||||+.+|++|+|||||+
T Consensus       424 ~~~~~tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~  496 (608)
T 3j16_B          424 PKFPGTVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA  496 (608)
T ss_dssp             CCCCSBHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             ccCCccHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence            66668999987532  211  111   13457789999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC--CeEEEecCccChhh
Q psy12625        198 GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE--GYCTYQGTVPGLVP  258 (612)
Q Consensus       198 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~  258 (612)
                      |||+.++..++++|+++++ +|+|||++|||.. ++..+|||+++|++  |+++..|+|+++.+
T Consensus       497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~  559 (608)
T 3j16_B          497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT  559 (608)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence            9999999999999999964 6999999999976 68889999999986  89999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.2e-37  Score=345.07  Aligned_cols=194  Identities=24%  Similarity=0.298  Sum_probs=159.0

Q ss_pred             EeEEEEEEeecccccccccc-ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE---------E
Q psy12625         24 QDISYSALYYDTHSYSIKSK-DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI---------E   93 (612)
Q Consensus        24 ~~ls~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I---------~   93 (612)
                      +||+++|          +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|.     +|++         .
T Consensus        95 ~~ls~~y----------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-----~G~~~~~~~~~~~~  158 (607)
T 3bk7_A           95 EDCVHRY----------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-----LCEDNDSWDNVIRA  158 (607)
T ss_dssp             GSEEEEC----------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-----TTTTCCCHHHHHHH
T ss_pred             CCeEEEE----------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-----CCccccccchhhhe
Confidence            5666665          444 4899999 99999999999999999999999999999873     4554         3


Q ss_pred             ECCEeccch--H--hhccceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625         94 INETRLQDH--R--MLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus        94 ~~g~~~~~~--~--~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      ++|.++.+.  .  ..+..+++++|.....+.   .||+|++..    .   .     .+++++++++.+||++..++++
T Consensus       159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~---~-----~~~~~~~~L~~lgL~~~~~~~~  226 (607)
T 3bk7_A          159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V---D-----EVGKFEEVVKELELENVLDREL  226 (607)
T ss_dssp             TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T---C-----CSSCHHHHHHHTTCTTGGGSBG
T ss_pred             eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h---H-----HHHHHHHHHHHcCCCchhCCCh
Confidence            566554221  1  123468899987433221   389998853    1   1     1235788999999999999999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++||+. .+..+||+|++|+++.
T Consensus       227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~  305 (607)
T 3bk7_A          227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP  305 (607)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence            999999999999999999999999999999999999999999999999888999999999975 6788999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=9.7e-37  Score=339.89  Aligned_cols=198  Identities=24%  Similarity=0.292  Sum_probs=160.0

Q ss_pred             eEEE-EeEEEEEEeecccccccccc-ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-----
Q psy12625         20 NLLF-QDISYSALYYDTHSYSIKSK-DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----   92 (612)
Q Consensus        20 ~l~~-~~ls~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-----   92 (612)
                      -.++ +||+++|          +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|.     +|++     
T Consensus        20 ~~~~~~~ls~~y----------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-----~G~~~~~~~   83 (538)
T 1yqt_A           20 MEQLEEDCVHRY----------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-----LCGDNDSWD   83 (538)
T ss_dssp             ----CCCEEEEC----------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSHH
T ss_pred             ChhHhcCcEEEE----------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCccCcchh
Confidence            3444 5888876          344 4899999 99999999999999999999999999999873     4554     


Q ss_pred             ----EECCEeccch--H--hhccceEEEccCCCCCCC---CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc
Q psy12625         93 ----EINETRLQDH--R--MLRKESCYIMQDNLLQEL---LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC  161 (612)
Q Consensus        93 ----~~~g~~~~~~--~--~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~  161 (612)
                          .++|.++...  .  ..+..+++++|+....+.   .|+.|++...   .         .+++++++++.+||++.
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~  151 (538)
T 1yqt_A           84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENV  151 (538)
T ss_dssp             HHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTT
T ss_pred             hhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChh
Confidence                3566553221  1  113468899997544332   3898887531   0         12357889999999999


Q ss_pred             cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        162 KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      .++++++|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++++|+|||+++||.. .+.++||++++
T Consensus       152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~v  230 (538)
T 1yqt_A          152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHV  230 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999888999999999975 67889999999


Q ss_pred             ecCCe
Q psy12625        242 LTEGY  246 (612)
Q Consensus       242 L~~G~  246 (612)
                      |++|.
T Consensus       231 l~~~~  235 (538)
T 1yqt_A          231 VYGEP  235 (538)
T ss_dssp             EEEET
T ss_pred             EcCcc
Confidence            98653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3.9e-36  Score=344.48  Aligned_cols=212  Identities=23%  Similarity=0.304  Sum_probs=144.6

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHCCCCCCCCC--CceeEEEECCE
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLL---------------------DILAGYRRPKKTE--TNSGYIEINET   97 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~l~g~~~p~~~~--~~~G~I~~~g~   97 (612)
                      ..+++|+|||++|++||+++|+||||||||||+                     ++++|+.+|..+.  ...|.|.++|.
T Consensus        29 ~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSC
T ss_pred             CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCc
Confidence            356799999999999999999999999999998                     8888887763211  12567778776


Q ss_pred             eccchHhhccceEEEccCCC-------------------CCCCCCHHHHHHHHHHhccCCCCCHHHHH------HHHHHH
Q psy12625         98 RLQDHRMLRKESCYIMQDNL-------------------LQELLTVEESLTVAAHLKLGNQYSRKAKE------SKVDSI  152 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~------~~v~~~  152 (612)
                      +...  ..++.+++|+|...                   .++.+||+||+.+...+..... .....+      ....++
T Consensus       109 ~~~~--~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  185 (670)
T 3ux8_A          109 TTSR--NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGF  185 (670)
T ss_dssp             C-------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHH
T ss_pred             hhhc--cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHH
Confidence            5321  12344555555433                   2456899999987533221100 000000      111245


Q ss_pred             HHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        153 ADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       153 l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ++.+||.+. .++++++|||||||||+|||||+.+|+  +|||||||+|||+.++..+++.|++++++|.|||++|||+.
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            889999875 699999999999999999999999998  99999999999999999999999999888999999999975


Q ss_pred             hHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        230 ASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       230 ~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                       . ...||++++|      ++|++++.|+++++.
T Consensus       266 -~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          266 -T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             -H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             -H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence             3 4569999999      899999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=4.4e-35  Score=340.95  Aligned_cols=199  Identities=24%  Similarity=0.268  Sum_probs=168.0

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      +..|...|+++.|          +++.+|+|+|+++++||+++|+||||||||||||+|+|           |+|  +|.
T Consensus       433 ~~~L~~~~ls~~y----------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~  489 (986)
T 2iw3_A          433 GEDLCNCEFSLAY----------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGF  489 (986)
T ss_dssp             SCEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTC
T ss_pred             cceeEEeeEEEEE----------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCC
Confidence            4567778999887          56789999999999999999999999999999999995           111  333


Q ss_pred             eccchHhhccceEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCChhhhh
Q psy12625         98 RLQDHRMLRKESCYIMQDN-LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSGGQKK  175 (612)
Q Consensus        98 ~~~~~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq  175 (612)
                      +..  .  +..++|++|+. .+++.+||.|++.+  .  .. ..     +++++++++.+|+. +..++++++|||||||
T Consensus       490 ~~~--~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~-~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQ  555 (986)
T 2iw3_A          490 PTQ--E--ECRTVYVEHDIDGTHSDTSVLDFVFE--S--GV-GT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKM  555 (986)
T ss_dssp             CCT--T--TSCEEETTCCCCCCCTTSBHHHHHHT--T--CS-SC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHH
T ss_pred             ccc--c--ceeEEEEcccccccccCCcHHHHHHH--h--hc-CH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHH
Confidence            321  1  12378999874 67888999999975  1  11 11     46788999999995 6789999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE-EecCcc
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT-YQGTVP  254 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~  254 (612)
                      |++|||+|+.+|++|||||||+|||+.++..+.+.|++   +|+|||+++||.. .+.++||++++|++|+++ +.|+++
T Consensus       556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~  631 (986)
T 2iw3_A          556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFT  631 (986)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHH
T ss_pred             HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHH
Confidence            99999999999999999999999999999999999988   5899999999975 678899999999999997 689887


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      +..
T Consensus       632 e~~  634 (986)
T 2iw3_A          632 EFV  634 (986)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.4e-35  Score=343.20  Aligned_cols=208  Identities=24%  Similarity=0.320  Sum_probs=163.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..|+++|++++|        +.+++++|+|+|+++++||+++|+||||||||||+|+|+|+.+|     .+|+|.++|. 
T Consensus       670 ~mL~v~nLs~~Y--------~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-----~sG~I~~~~~-  735 (986)
T 2iw3_A          670 AIVKVTNMEFQY--------PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-----TSGEVYTHEN-  735 (986)
T ss_dssp             EEEEEEEEEECC--------TTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-----SEEEEEECTT-
T ss_pred             ceEEEEeeEEEe--------CCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----CceEEEEcCc-
Confidence            469999999876        21236799999999999999999999999999999999999986     6899999862 


Q ss_pred             ccchHhhccceEEEccCCCC----CCCCCHHHHHHHHHHhc------------cC-------------------------
Q psy12625         99 LQDHRMLRKESCYIMQDNLL----QELLTVEESLTVAAHLK------------LG-------------------------  137 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l----~~~lTv~e~l~~~~~l~------------~~-------------------------  137 (612)
                              ..++|++|++..    ....|+.|++.+.....            ..                         
T Consensus       736 --------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~  807 (986)
T 2iw3_A          736 --------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHS  807 (986)
T ss_dssp             --------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEE
T ss_pred             --------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhh
Confidence                    147888886521    12357777665421100            00                         


Q ss_pred             ---------------------------CCC----------------------------------CHHHHHHHHHHHHHHc
Q psy12625        138 ---------------------------NQY----------------------------------SRKAKESKVDSIADSL  156 (612)
Q Consensus       138 ---------------------------~~~----------------------------------~~~~~~~~v~~~l~~l  156 (612)
                                                 ...                                  .+...+++++++++.+
T Consensus       808 r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l  887 (986)
T 2iw3_A          808 RRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML  887 (986)
T ss_dssp             EEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred             hhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc
Confidence                                       000                                  0001135688999999


Q ss_pred             CCcc-c-cCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625        157 SIST-C-KNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN  234 (612)
Q Consensus       157 gL~~-~-~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~  234 (612)
                      ||.+ . .++++++|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++   +.|||++|||.. .+.+
T Consensus       888 GL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~  963 (986)
T 2iw3_A          888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKN  963 (986)
T ss_dssp             TCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTT
T ss_pred             CCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHH
Confidence            9975 3 58899999999999999999999999999999999999999999999888764   579999999975 5778


Q ss_pred             cccceeeecCCeEEEecC
Q psy12625        235 MADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       235 ~~D~v~~L~~G~iv~~G~  252 (612)
                      +||++++|++|+++..|+
T Consensus       964 l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          964 LTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             TCCEEECCBTTBCCC---
T ss_pred             hCCEEEEEECCEEEEeCC
Confidence            999999999999987764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=4.4e-34  Score=327.43  Aligned_cols=199  Identities=24%  Similarity=0.330  Sum_probs=153.3

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------CCCCCCCCCCceeEEEECCEec
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA----------------------GYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~----------------------g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+.+|+|||++|++||+++|+||||||||||+++|.                      |+.+      ..|.|.++|.++
T Consensus       334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~------~~~~i~~~~~~~  407 (670)
T 3ux8_A          334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH------LDKVIDIDQSPI  407 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG------CSEEEECCSSCS
T ss_pred             cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc------cCceeEeccccC
Confidence            456899999999999999999999999999998764                      2222      246788888765


Q ss_pred             cchH-----hh--------------------------------------ccceEEEccCCCCCC----------------
Q psy12625        100 QDHR-----ML--------------------------------------RKESCYIMQDNLLQE----------------  120 (612)
Q Consensus       100 ~~~~-----~~--------------------------------------~~~i~yv~Q~~~l~~----------------  120 (612)
                      ....     ..                                      ....|+++|+..+++                
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (670)
T 3ux8_A          408 GRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNR  487 (670)
T ss_dssp             CSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCH
T ss_pred             CCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccCh
Confidence            3110     00                                      011244444333322                


Q ss_pred             ----------------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHH
Q psy12625        121 ----------------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALEL  183 (612)
Q Consensus       121 ----------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL  183 (612)
                                      .+||+||+.+....         ...+++.+.++.+|+.+ ..++++++|||||||||+|||||
T Consensus       488 ~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL  558 (670)
T 3ux8_A          488 ETLEVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL  558 (670)
T ss_dssp             HHHTCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             hhhheeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHH
Confidence                            47899998774211         12345677888999975 46889999999999999999999


Q ss_pred             hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCcc
Q psy12625        184 LSNP---SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVP  254 (612)
Q Consensus       184 ~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~  254 (612)
                      +.+|   ++|||||||+|||+.++..++++|++++++|+|||+++||+. . ...||+|++|      ++|++++.|+++
T Consensus       559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~  636 (670)
T 3ux8_A          559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPE  636 (670)
T ss_dssp             HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred             hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence            9887   599999999999999999999999999888999999999975 3 4779999999      899999999998


Q ss_pred             Chh
Q psy12625        255 GLV  257 (612)
Q Consensus       255 ~~~  257 (612)
                      ++.
T Consensus       637 ~~~  639 (670)
T 3ux8_A          637 EVA  639 (670)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-34  Score=318.70  Aligned_cols=212  Identities=22%  Similarity=0.333  Sum_probs=154.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-------
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-------   92 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-------   92 (612)
                      .|++.||...+.....++|+. ....|++++ .+++||+++|+||||||||||||+|+|+++|     .+|+|       
T Consensus        69 ~i~i~nl~~~~~~~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-----~~G~i~~~~~~~  141 (608)
T 3j16_B           69 AIQIINLPTNLEAHVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-----NLGRFDDPPEWQ  141 (608)
T ss_dssp             CEEEEEESSSSSTTEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-----CTTTTCCSSCHH
T ss_pred             ceEEecCChhhcCCeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCceEecccchh
Confidence            466666653331111112221 234677777 6899999999999999999999999999987     45666       


Q ss_pred             ----EECCEeccch--Hhhccc--eEEEccCCCC------CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC
Q psy12625         93 ----EINETRLQDH--RMLRKE--SCYIMQDNLL------QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI  158 (612)
Q Consensus        93 ----~~~g~~~~~~--~~~~~~--i~yv~Q~~~l------~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL  158 (612)
                          .+.|.++...  ....+.  ..+.+|....      -+..++.+++...    .  .    ..+++++++++.+||
T Consensus       142 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~--~----~~~~~~~~~l~~~gl  211 (608)
T 3j16_B          142 EIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M--E----KSPEDVKRYIKILQL  211 (608)
T ss_dssp             HHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C--C----SCHHHHHHHHHHHTC
T ss_pred             hhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h--h----hHHHHHHHHHHHcCC
Confidence                2333322111  111122  2334443211      1123555554321    0  1    123568899999999


Q ss_pred             ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625        159 STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       159 ~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~  238 (612)
                      .+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++||.. ++..++|+
T Consensus       212 ~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~dr  290 (608)
T 3j16_B          212 ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDF  290 (608)
T ss_dssp             TGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSE
T ss_pred             cchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence            99999999999999999999999999999999999999999999999999999999888999999999975 68899999


Q ss_pred             eeeecCCeEEE
Q psy12625        239 LYVLTEGYCTY  249 (612)
Q Consensus       239 v~~L~~G~iv~  249 (612)
                      +++|++|..++
T Consensus       291 v~vl~~~~~~~  301 (608)
T 3j16_B          291 VCIIYGVPSVY  301 (608)
T ss_dssp             EEEEESCTTTE
T ss_pred             EEEEeCCcccc
Confidence            99998876544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.98  E-value=1.5e-33  Score=313.62  Aligned_cols=178  Identities=25%  Similarity=0.304  Sum_probs=141.6

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-----------EECCEeccch--Hhh--ccceEEEccCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-----------EINETRLQDH--RML--RKESCYIMQDN  116 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-----------~~~g~~~~~~--~~~--~~~i~yv~Q~~  116 (612)
                      ..++||+++|+||||||||||+|+|+|+++|     .+|+|           .++|+++...  ...  ...+....|..
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-----~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~   95 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIP-----NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYV   95 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHHTTSSCC-----CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchh
Confidence            4569999999999999999999999999987     46777           5667654321  111  12344444432


Q ss_pred             CCC---CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEe
Q psy12625        117 LLQ---ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLD  193 (612)
Q Consensus       117 ~l~---~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlD  193 (612)
                      ...   ...|++|++...            +.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++|+||
T Consensus        96 ~~~~~~~~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD  163 (538)
T 3ozx_A           96 EYASKFLKGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD  163 (538)
T ss_dssp             TGGGTTCCSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             hhhhhhccCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            221   224788765321            01235678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEE
Q psy12625        194 EPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCT  248 (612)
Q Consensus       194 EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv  248 (612)
                      |||++||+.++..+.+.|+++++ |+|||+++||.. .+..+||+|++|++|...
T Consensus       164 EPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~  216 (538)
T 3ozx_A          164 QPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV  216 (538)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred             CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence            99999999999999999999976 899999999975 688999999999876543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.97  E-value=8.2e-32  Score=311.17  Aligned_cols=202  Identities=24%  Similarity=0.331  Sum_probs=156.7

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-CCC---------CCCCCCCcee------EEEECCEeccch-----H
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILA-GYR---------RPKKTETNSG------YIEINETRLQDH-----R  103 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-g~~---------~p~~~~~~~G------~I~~~g~~~~~~-----~  103 (612)
                      .|+|||++|++||+++|+|+||||||||++.|. |.+         .+.......|      .|.++|.++...     .
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa  718 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA  718 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence            699999999999999999999999999999853 211         1111011234      588998876310     0


Q ss_pred             -------hh---------ccceEEEccCCCCC----------------------C-------------------------
Q psy12625        104 -------ML---------RKESCYIMQDNLLQ----------------------E-------------------------  120 (612)
Q Consensus       104 -------~~---------~~~i~yv~Q~~~l~----------------------~-------------------------  120 (612)
                             ..         .+..||++|...+.                      +                         
T Consensus       719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g  798 (972)
T 2r6f_A          719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG  798 (972)
T ss_dssp             HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred             hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence                   00         13457777753221                      0                         


Q ss_pred             -------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHHHhhCC---CE
Q psy12625        121 -------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNP---SI  189 (612)
Q Consensus       121 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~p---~i  189 (612)
                             .+||.|++.+..      .. .  ..+++.++++.+||.. ..++++.+|||||||||+||++|+.+|   ++
T Consensus       799 ~sI~dvl~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~l  869 (972)
T 2r6f_A          799 KNIAEVLDMTVEDALDFFA------SI-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL  869 (972)
T ss_dssp             BCHHHHHTSBHHHHHHHTC------SC-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEE
T ss_pred             CCHHHhhhcCHHHHHHHHh------cc-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCE
Confidence                   357777776532      11 1  1234578999999987 789999999999999999999999865   99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +||||||+|||+.++..+++.|++++++|.|||+++||+. . ...||+|++|      ++|++++.|+++++.
T Consensus       870 LILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~  941 (972)
T 2r6f_A          870 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  941 (972)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence            9999999999999999999999999989999999999975 3 4789999999      689999999988764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.97  E-value=9.3e-32  Score=310.43  Aligned_cols=219  Identities=20%  Similarity=0.282  Sum_probs=159.6

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHH-HHCCC-------CCCCC-----
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDI-LAGYR-------RPKKT-----   85 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-l~g~~-------~p~~~-----   85 (612)
                      ..|+++|+++               ..|+|||++|++||+++|+|+||||||||++. |+|+.       +|..+     
T Consensus       501 ~~L~v~~l~~---------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~  565 (842)
T 2vf7_A          501 GWLELNGVTR---------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDED  565 (842)
T ss_dssp             CEEEEEEEEE---------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------
T ss_pred             ceEEEEeeee---------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccc
Confidence            4588888753               26999999999999999999999999999996 77543       22111     


Q ss_pred             --------CCcee-------EEEECCEeccch------------Hhhc---------cceEEEcc---------------
Q psy12625         86 --------ETNSG-------YIEINETRLQDH------------RMLR---------KESCYIMQ---------------  114 (612)
Q Consensus        86 --------~~~~G-------~I~~~g~~~~~~------------~~~~---------~~i~yv~Q---------------  114 (612)
                              ...+|       .|.++|.++...            ...|         +..||.++               
T Consensus       566 ~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~  645 (842)
T 2vf7_A          566 PADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQ  645 (842)
T ss_dssp             ------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTT
T ss_pred             ccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCcccccccccccccccccc
Confidence                    11467       789998876311            0111         11222221               


Q ss_pred             -------CCCCC------------------------CCCCHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy12625        115 -------DNLLQ------------------------ELLTVEESLTVAA--HLKLGNQYSRKAKESKVDSIADSLSIST-  160 (612)
Q Consensus       115 -------~~~l~------------------------~~lTv~e~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~-  160 (612)
                             +-.++                        ...++.|++.+..  .+.....   ....+++.++++.+||.. 
T Consensus       646 g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~  722 (842)
T 2vf7_A          646 GEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYL  722 (842)
T ss_dssp             TCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTS
T ss_pred             CCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcc
Confidence                   11111                        1234444432110  0000001   112356889999999987 


Q ss_pred             ccCcccCCCChhhhhHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625        161 CKNTLTKHLSGGQKKRLSIALELLSN---PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       161 ~~~~~~~~LSgGerqRv~ia~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      ..++++.+|||||||||+||++|+.+   |++|||||||+|||+.++..+++.|++++++|.|||+++||+. .+ ..||
T Consensus       723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aD  800 (842)
T 2vf7_A          723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASD  800 (842)
T ss_dssp             BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCS
T ss_pred             cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCC
Confidence            46899999999999999999999996   7999999999999999999999999999989999999999975 45 8899


Q ss_pred             ceeee------cCCeEEEecCccChh
Q psy12625        238 YLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       238 ~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +|++|      ++|++++.|+++++.
T Consensus       801 rii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          801 WVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             EEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             EEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            99999      689999999988764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.97  E-value=6e-31  Score=306.01  Aligned_cols=205  Identities=23%  Similarity=0.365  Sum_probs=158.6

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHCCCCCCCC-CCce------eEEEECCEeccch----
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLL---------DILAGYRRPKKT-ETNS------GYIEINETRLQDH----  102 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~l~g~~~p~~~-~~~~------G~I~~~g~~~~~~----  102 (612)
                      +..|+|||+++++|++++|+||||||||||+         +.+.+...+... ...+      +.+.+++.++...    
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~  676 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN  676 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence            4579999999999999999999999999997         455554332111 1123      3455655443110    


Q ss_pred             -H-------h-------------------------------hccceEEEccCCCCCC-----------------------
Q psy12625        103 -R-------M-------------------------------LRKESCYIMQDNLLQE-----------------------  120 (612)
Q Consensus       103 -~-------~-------------------------------~~~~i~yv~Q~~~l~~-----------------------  120 (612)
                       .       .                               ..+..|++.|+..+++                       
T Consensus       677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~  756 (916)
T 3pih_A          677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY  756 (916)
T ss_dssp             HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred             ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence             0       0                               0123578887766654                       


Q ss_pred             ---------CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC---
Q psy12625        121 ---------LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP---  187 (612)
Q Consensus       121 ---------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p---  187 (612)
                               .+||.|++.|...         .....++.++++.+||... .++++.+|||||||||+|||||+.+|   
T Consensus       757 ~g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p  827 (916)
T 3pih_A          757 KGKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR  827 (916)
T ss_dssp             TTBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred             ccCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence                     3678888776421         1234567889999999764 58899999999999999999999875   


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625        188 SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP  258 (612)
Q Consensus       188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  258 (612)
                      +||||||||+|||+.+...+++.|++++++|.|||+++||++ . ...||+|++|      ++|++++.|+++++..
T Consensus       828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence            799999999999999999999999999988999999999975 3 4679999999      8999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.96  E-value=5.4e-29  Score=269.24  Aligned_cols=204  Identities=12%  Similarity=0.145  Sum_probs=149.4

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCC---------------------------------CCce
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKT---------------------------------ETNS   89 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~---------------------------------~~~~   89 (612)
                      ..+++++|+++++| +++|+|||||||||||++|+++..+...                                 .+.+
T Consensus        48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~  126 (415)
T 4aby_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR  126 (415)
T ss_dssp             ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred             ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence            45799999999999 9999999999999999999887653100                                 0236


Q ss_pred             eEEEECCEeccc--hHhhc-cceEEEccCCCCCCCCCHHHHHHHHHHhcc-----------------------CCC----
Q psy12625         90 GYIEINETRLQD--HRMLR-KESCYIMQDNLLQELLTVEESLTVAAHLKL-----------------------GNQ----  139 (612)
Q Consensus        90 G~I~~~g~~~~~--~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~-----------------------~~~----  139 (612)
                      |++.+||+++..  ...+. ..+++++|++.++.. +..+...+......                       ...    
T Consensus       127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~  205 (415)
T 4aby_A          127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK  205 (415)
T ss_dssp             EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            899999999643  23333 458999999876543 55544443221100                       000    


Q ss_pred             CC------------------------------HHHHHHHHHHHHHHcCCccc-----------------------cC---
Q psy12625        140 YS------------------------------RKAKESKVDSIADSLSISTC-----------------------KN---  163 (612)
Q Consensus       140 ~~------------------------------~~~~~~~v~~~l~~lgL~~~-----------------------~~---  163 (612)
                      +.                              -....+.+++.++.+++.+.                       ..   
T Consensus       206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  285 (415)
T 4aby_A          206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP  285 (415)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence            00                              00012345566777776431                       00   


Q ss_pred             ----cccCC-CChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625        164 ----TLTKH-LSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA  236 (612)
Q Consensus       164 ----~~~~~-LSgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~  236 (612)
                          +.++. ||||||||++||++|+.+|  ++|||||||+|||+.++..+.+.|++++ +|.|||++||++  ++...|
T Consensus       286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~  362 (415)
T 4aby_A          286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA  362 (415)
T ss_dssp             SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred             CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence                22223 6999999999999999999  9999999999999999999999999998 689999999997  356899


Q ss_pred             cceeee----cCCeEEEec
Q psy12625        237 DYLYVL----TEGYCTYQG  251 (612)
Q Consensus       237 D~v~~L----~~G~iv~~G  251 (612)
                      |++++|    ++|+++...
T Consensus       363 d~i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          363 HHHYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             SEEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEeccCCceEEEE
Confidence            999999    899987654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-32  Score=298.25  Aligned_cols=186  Identities=15%  Similarity=0.130  Sum_probs=150.3

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-E-EEECCEeccchHhhccceEEEccCCC---CCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-Y-IEINETRLQDHRMLRKESCYIMQDNL---LQE  120 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~-I~~~g~~~~~~~~~~~~i~yv~Q~~~---l~~  120 (612)
                      +.++|+++++|++++|+||||||||||+|+|+|+.+|     .+| + |.+||.       .++.++|+||+..   +.+
T Consensus       128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----~~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~  195 (460)
T 2npi_A          128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-----FNAYQPLYINLD-------PQQPIFTVPGCISATPISD  195 (460)
T ss_dssp             HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-----HHCCCCEEEECC-------TTSCSSSCSSCCEEEECCS
T ss_pred             hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-----cCCceeEEEcCC-------ccCCeeeeccchhhccccc
Confidence            3478999999999999999999999999999999875     689 8 999982       2567999999984   445


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHH--HhhCCCE----EEEeC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE--LLSNPSI----IFLDE  194 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a--L~~~p~i----lllDE  194 (612)
                      .+||+||+ ++.....+.     ..++++.++++.+|+++..+  +.+|||||||||+|||+  |+.+|++    |||||
T Consensus       196 ~~tv~eni-~~~~~~~~~-----~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE  267 (460)
T 2npi_A          196 ILDAQLPT-WGQSLTSGA-----TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT  267 (460)
T ss_dssp             CCCTTCTT-CSCBCBSSC-----CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred             ccchhhhh-cccccccCc-----chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence            67999988 543221110     01234567788899988776  88999999999999999  9999999    99999


Q ss_pred             -CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--h---HHHhcccc-----eeeec-CCeEEEecCccCh
Q psy12625        195 -PTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS--A---SLLNMADY-----LYVLT-EGYCTYQGTVPGL  256 (612)
Q Consensus       195 -PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~  256 (612)
                       ||++||+. ...+.+++++   .+.|+|+++|+..  .   .+.+++|+     |++|+ +|+++ .|+++++
T Consensus       268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence             99999999 5555544443   4788999999976  1   45689999     99999 99999 8988665

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.94  E-value=4.8e-30  Score=251.83  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=105.5

Q ss_pred             cccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc-chHhhccceEEEccCCC
Q psy12625         39 SIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ-DHRMLRKESCYIMQDNL  117 (612)
Q Consensus        39 ~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~-~~~~~~~~i~yv~Q~~~  117 (612)
                      +++++.+|+|+    ++||+++|+||||||||||+|+|+|+ +|     .+|+|.  +.++. .....++.+||++|++ 
T Consensus         9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----~~G~I~--~~~~~~~~~~~~~~ig~v~q~~-   75 (208)
T 3b85_A            9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-----QSKQVS--RIILTRPAVEAGEKLGFLPGTL-   75 (208)
T ss_dssp             SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-----HTTSCS--EEEEEECSCCTTCCCCSSCC---
T ss_pred             CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-----cCCeee--eEEecCCchhhhcceEEecCCH-
Confidence            34667899996    89999999999999999999999999 86     456663  22211 1123467899999976 


Q ss_pred             CCCCCCHHHHH-HHHH----HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625        118 LQELLTVEESL-TVAA----HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL  192 (612)
Q Consensus       118 l~~~lTv~e~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illl  192 (612)
                             +||+ .+..    .+.  ...    ..++++++++. |+             ||||||+|||||+.+|++|||
T Consensus        76 -------~enl~~~~~~~~~~~~--~~~----~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllL  128 (208)
T 3b85_A           76 -------NEKIDPYLRPLHDALR--DMV----EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVIL  128 (208)
T ss_dssp             -----------CTTTHHHHHHHT--TTS----CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEE
T ss_pred             -------HHHHHHHHHHHHHHHH--Hhc----cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEE
Confidence                   3444 2211    111  001    12346667765 54             999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        193 DEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       193 DEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ||||+|    ++..+.+.|+++ ++|+||| +|||+.
T Consensus       129 DEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~  159 (208)
T 3b85_A          129 DEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT  159 (208)
T ss_dssp             CSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred             eCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence            999999    889999999998 6789999 999975

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.94  E-value=1.8e-26  Score=245.47  Aligned_cols=85  Identities=22%  Similarity=0.368  Sum_probs=78.6

Q ss_pred             CcccCCCChhhhhHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625        163 NTLTKHLSGGQKKRLSIALELL------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA  236 (612)
Q Consensus       163 ~~~~~~LSgGerqRv~ia~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~  236 (612)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+.++..+++.|++++++|.|||+++||+.  ..+.+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhC
Confidence            4678899999999999999999      699999999999999999999999999999888999999999974  37889


Q ss_pred             cceeeecCCeEEE
Q psy12625        237 DYLYVLTEGYCTY  249 (612)
Q Consensus       237 D~v~~L~~G~iv~  249 (612)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.93  E-value=6e-26  Score=237.56  Aligned_cols=205  Identities=20%  Similarity=0.238  Sum_probs=130.0

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC---------------C--------------------------
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK---------------T--------------------------   85 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---------------~--------------------------   85 (612)
                      +++++++.+| +++|+||||||||||+++|..+.....               +                          
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            4678899999 999999999999999999995541000               0                          


Q ss_pred             ----CCceeEEEECCEeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc-----------cCCCCCHHH----
Q psy12625         86 ----ETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK-----------LGNQYSRKA----  144 (612)
Q Consensus        86 ----~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~-----------~~~~~~~~~----  144 (612)
                          ...+|.+.+||++...  .....+.+++.+|+..+.+.-++.+++.....-+           .+....++-    
T Consensus        95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~  174 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF  174 (322)
T ss_dssp             EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred             EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                1124788999988532  1223345665555544433233333332211000           000000000    


Q ss_pred             ----------------HHHHHHHHHHH-cCC----ccccCcccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCC
Q psy12625        145 ----------------KESKVDSIADS-LSI----STCKNTLTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGL  199 (612)
Q Consensus       145 ----------------~~~~v~~~l~~-lgL----~~~~~~~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgL  199 (612)
                                      ...++.+.++. +++    .+..++++..||||||||++||++|+    .+|++++|||||++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L  254 (322)
T 1e69_A          175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL  254 (322)
T ss_dssp             HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred             HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence                            00111222332 111    23456778899999999999999997    578999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccce--eeecCCe-EEEecCccC
Q psy12625        200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYL--YVLTEGY-CTYQGTVPG  255 (612)
Q Consensus       200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v--~~L~~G~-iv~~G~~~~  255 (612)
                      |+..+..+.+.|++++ +|.+||+++|++.  +.+.||++  ++|.+|. .+.....++
T Consensus       255 D~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          255 DDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             CHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred             CHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence            9999999999999985 5889999999963  57899987  7888874 444455544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.91  E-value=5e-28  Score=259.89  Aligned_cols=176  Identities=12%  Similarity=0.112  Sum_probs=141.8

Q ss_pred             cccccceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch
Q psy12625         43 KDILKDISGVFVSKE--------------------LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH  102 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~  102 (612)
                      +.+|++||+++++|+                    +++|+||||||||||+|+|+|+.+|     .+|+|.++|.+..  
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-----~~GsI~~~g~~~t--  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-----EEGAAKTGVVEVT--  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-----STTSCCCCC------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-----cCceEEECCeecc--
Confidence            568999999999999                    9999999999999999999999886     5799999887632  


Q ss_pred             HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh--hhhHHHHH
Q psy12625        103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG--QKKRLSIA  180 (612)
Q Consensus       103 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG--erqRv~ia  180 (612)
                         +  .++++|++ .++.+|+.|++.+..    +        +.+++++++.+++.+.. ..+. ||||  ||||+.||
T Consensus       109 ---~--~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la  168 (413)
T 1tq4_A          109 ---M--ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIA  168 (413)
T ss_dssp             ---C--CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHH
T ss_pred             ---e--eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHH
Confidence               1  27899985 567788888764421    0        13478889999998763 3333 9999  99999999


Q ss_pred             HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCch-HHHhccccee
Q psy12625        181 LELLS----------NPSIIFLDEPTTGLDYLNATNLVKLLRDMA-----HQ----GTMIICTLHQPSA-SLLNMADYLY  240 (612)
Q Consensus       181 ~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~-----~~----g~tvi~~~H~~~~-~i~~~~D~v~  240 (612)
                      ++|+.          +|++++|||||+|||+.++.++++.++++.     +.    ..+|++++|+... .+.+++|++.
T Consensus       169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            99999          999999999999999999999999999985     23    3678899998763 2778888885


Q ss_pred             -eecCC
Q psy12625        241 -VLTEG  245 (612)
Q Consensus       241 -~L~~G  245 (612)
                       .|.+|
T Consensus       249 ~~Lpeg  254 (413)
T 1tq4_A          249 SDLPIY  254 (413)
T ss_dssp             HHSCGG
T ss_pred             HhCccc
Confidence             45444

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.91  E-value=4.7e-26  Score=216.54  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=101.7

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC-CCCHHH
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE-LLTVEE  126 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~-~lTv~e  126 (612)
                      |||+++++||+++|+||||||||||+|++.+-..           .+      .....+   ++++|++.-.. .-++++
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----------~~------~~d~~~---g~~~~~~~~~~~~~~~~~   60 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----------VI------SSDFCR---GLMSDDENDQTVTGAAFD   60 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----------EE------EHHHHH---HHHCSSTTCGGGHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----------EE------ccHHHH---HHhcCcccchhhHHHHHH
Confidence            6899999999999999999999999999653211           11      112222   56667642110 001111


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL----  202 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~----  202 (612)
                      .+                 .... +.....|.....+. ....|||||||++||++++.+|++++|||||++||+.    
T Consensus        61 ~~-----------------~~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R  121 (171)
T 4gp7_A           61 VL-----------------HYIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR  121 (171)
T ss_dssp             HH-----------------HHHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred             HH-----------------HHHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence            11                 1111 12223455544443 2446999999999999999999999999999999999    


Q ss_pred             ------------HHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        203 ------------NATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       203 ------------~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                                  .+.++.+.|++++++|.|+|+++||+.
T Consensus       122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A          122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence                        669999999999878999999999975

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.91  E-value=1.1e-25  Score=215.68  Aligned_cols=147  Identities=10%  Similarity=0.092  Sum_probs=104.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH--hhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR--MLRKESCYIMQDNLLQELLTVEESLTVAAHLK  135 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~--~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~  135 (612)
                      .++|+||||||||||+|+|+|++.          |.++|.+..+..  ..++.+||++|+.      ++.+++ + +  +
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~----------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~   61 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG----------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--S   61 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG----------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--E
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--h
Confidence            589999999999999999999864          223333321111  3467899999975      222222 0 0  0


Q ss_pred             cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q psy12625        136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALE-----LLSNPSIIFLDE--PTTGLDYLNATNLV  208 (612)
Q Consensus       136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a-----L~~~p~illlDE--PtsgLD~~~~~~i~  208 (612)
                      ..  ..                -++..++++.+||||||||++||++     ++.+|++++|||  ||++||+..+..+.
T Consensus        62 ~~--~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~  123 (178)
T 1ye8_A           62 KF--FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR  123 (178)
T ss_dssp             TT--CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred             hc--CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence            00  00                0135677888999999999999996     999999999999  99999999999999


Q ss_pred             HHHHHHHhCCCEEEEEec--CCchHHHhcccceeeecCCeEEE
Q psy12625        209 KLLRDMAHQGTMIICTLH--QPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       209 ~~l~~l~~~g~tvi~~~H--~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      +.+++   .+.|+|+++|  +....+..++|+    .+|+++.
T Consensus       124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            88865   5677888886  223456677776    5577665

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.90  E-value=4.1e-28  Score=237.74  Aligned_cols=183  Identities=15%  Similarity=0.032  Sum_probs=126.8

Q ss_pred             ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625         40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~  119 (612)
                      .+.+.+++|  .++++||+++|+||||||||||+|+|+|+.+.     ..+.+.+.+.+..  ...++.++|++|++..+
T Consensus         6 ~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-----i~~~~~~~~~~~~--~~~~~~i~~~~q~~~~~   76 (207)
T 1znw_A            6 PDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-----LHFSVSATTRAPR--PGEVDGVDYHFIDPTRF   76 (207)
T ss_dssp             ---------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-----CEECCCEESSCCC--TTCCBTTTBEECCHHHH
T ss_pred             CCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-----eEEcccccccCCc--ccccCCCeeEecCHHHH
Confidence            345678898  68999999999999999999999999999752     2333222222211  12356799999998888


Q ss_pred             CCCCHHHHHHHHHHh----ccCCCCCHHHHHHHHHHH------HHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625        120 ELLTVEESLTVAAHL----KLGNQYSRKAKESKVDSI------ADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI  189 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l----~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i  189 (612)
                      +.+|+.|++......    .. ...++++.++++++.      ++.+|+.+..+++++.||           +|+.+|++
T Consensus        77 ~~~~~~~~l~~~~~~~~n~~~-~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~  144 (207)
T 1znw_A           77 QQLIDQGELLEWAEIHGGLHR-SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSW  144 (207)
T ss_dssp             HHHHHTTCEEEEEEEGGGTEE-EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCH
T ss_pred             HHHHhcCCceeehhhcCchhh-cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCH
Confidence            777777765321100    10 012344455666665      667778777888888888           89999999


Q ss_pred             EEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        190 IFLDEPTTGL----DYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       190 lllDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ++|||||+|+    |+..+.++.+.++++++ +|.|+|+++||+. ++.++||++++|..
T Consensus       145 ~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~  203 (207)
T 1znw_A          145 QDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA  203 (207)
T ss_dssp             HHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence            9999999998    78899999999999975 6899999999976 68999999999853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.90  E-value=3.7e-28  Score=250.88  Aligned_cols=168  Identities=13%  Similarity=0.150  Sum_probs=126.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          + +++|+|+|+++++|++++|+||||||||||+++|+|++        +|+|.      
T Consensus       101 ~i~~~~vs~~y----------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--------~G~I~------  155 (305)
T 2v9p_A          101 FFNYQNIELIT----------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--------GGSVL------  155 (305)
T ss_dssp             HHHHTTCCHHH----------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--------TCEEE------
T ss_pred             eEEEEEEEEEc----------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--------CceEE------
Confidence            47788888765          3 57999999999999999999999999999999999986        37773      


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHH-HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEE-SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                                +|++|++.+++ .|++| |+.+..      ..++     .+.+.++.+ |.+..+  ..+||||||||  
T Consensus       156 ----------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR--  208 (305)
T 2v9p_A          156 ----------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK--  208 (305)
T ss_dssp             ----------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC--
T ss_pred             ----------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH--
Confidence                      45667766665 36665 654421      1111     344555553 443344  67899999999  


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                       ||||+.+|+|||    ||+||+.++..+..              .+|++.  ..+.+|+| +|++|++++.|+++++..
T Consensus       209 -ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~  266 (305)
T 2v9p_A          209 -AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKS  266 (305)
T ss_dssp             -CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHH
T ss_pred             -HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHH
Confidence             999999999999    99999999988862              178875  36889999 999999999999988744


Q ss_pred             HHh
Q psy12625        259 YLS  261 (612)
Q Consensus       259 ~f~  261 (612)
                      +|.
T Consensus       267 ~y~  269 (305)
T 2v9p_A          267 FFV  269 (305)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.89  E-value=7.1e-25  Score=227.03  Aligned_cols=175  Identities=14%  Similarity=0.177  Sum_probs=136.1

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNL  117 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~  117 (612)
                      ++++|+++++|++++|+||||||||||++.|+|+++|     .+|+|.++|.++...      ..+  +..++|++|++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~  164 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD  164 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence            3578899999999999999999999999999999875     479999999886432      122  357999999998


Q ss_pred             -CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeC
Q psy12625        118 -LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDE  194 (612)
Q Consensus       118 -l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDE  194 (612)
                       +++.+|++|++.++....    ..        ..+++.+|+.+..++++.+||   |||++|||+|+.+|+  +|+|| 
T Consensus       165 ~~~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-  228 (302)
T 3b9q_A          165 KAKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-  228 (302)
T ss_dssp             CCCHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred             ccCHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence             889999999998764211    10        135677899888888899999   999999999999999  99999 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhcccceeeecCCeE
Q psy12625        195 PTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS--------ASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i  247 (612)
                      ||+|||+.++      ++++.+ .|.|+|++||...        ..+....+.|..+..|+.
T Consensus       229 ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          229 GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            9999999865      345554 5899999999432        122334456677776653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.88  E-value=3e-26  Score=248.76  Aligned_cols=194  Identities=13%  Similarity=0.078  Sum_probs=152.3

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE-
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET-   97 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~-   97 (612)
                      ..++.+|+++.|.         .++.+|+++ +++.+||+++|+|||||||||||++|+|+.+|     ..|.|.++|+ 
T Consensus       130 ~~l~~~~v~~~~~---------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----~~G~i~~~G~r  194 (438)
T 2dpy_A          130 NPLQRTPIEHVLD---------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-----DVIVVGLIGER  194 (438)
T ss_dssp             CTTTSCCCCSBCC---------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-----SEEEEEEESCC
T ss_pred             CceEEeccceecC---------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-----CeEEEEEecee
Confidence            3467778776651         146799999 99999999999999999999999999999875     6899999998 


Q ss_pred             --eccc-------hHhhccceEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccC
Q psy12625         98 --RLQD-------HRMLRKESCYIMQD-NLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTK  167 (612)
Q Consensus        98 --~~~~-------~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~  167 (612)
                        ++.+       ...+++.++|++|+ +..++.+||.+|+.+.+......       .+++         ....| .+.
T Consensus       195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~  257 (438)
T 2dpy_A          195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLT  257 (438)
T ss_dssp             HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHH
T ss_pred             cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHH
Confidence              4322       12356789999995 55677789999988765432100       0001         11112 256


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhcccc
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH---Q-GT-----MIICTLHQPSASLLNMADY  238 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~i~~~~D~  238 (612)
                      .+|+|| ||++||   +.+|++      |+|||+.....+.++++++.+   + |.     ||++++||.+   ..++|+
T Consensus       258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~  324 (438)
T 2dpy_A          258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS  324 (438)
T ss_dssp             HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred             HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence            799999 999999   889988      999999999999999999876   3 64     9999999987   467999


Q ss_pred             eeeecCCeEEEecCccChh
Q psy12625        239 LYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       239 v~~L~~G~iv~~G~~~~~~  257 (612)
                      +++|.+|+++..|++++..
T Consensus       325 v~~l~dG~Ivl~~~~~~~~  343 (438)
T 2dpy_A          325 ARAILDGHIVLSRRLAEAG  343 (438)
T ss_dssp             HHHHSSEEEEECHHHHHTT
T ss_pred             EEEEeCcEEEEeCCHHHcc
Confidence            9999999999998876553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.87  E-value=7.5e-25  Score=223.47  Aligned_cols=147  Identities=14%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG  137 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~  137 (612)
                      .++|+||||||||||+|+|+|+..|     .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.++..... 
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~-----~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-   76 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS-----RKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-   76 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-----CCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-
Confidence            4789999999999999999999886     58999999988532 3345789999999999999999999988653321 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625        138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ  217 (612)
Q Consensus       138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~  217 (612)
                       .    ...+.+.+.++    .+..+..+.+||||||||+++||+++.   ++++||||+|||+..    .+.++++++.
T Consensus        77 -~----~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~  140 (270)
T 3sop_A           77 -E----NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV  140 (270)
T ss_dssp             -T----TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred             -H----HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence             1    11122333333    455667788999999999999999876   999999999999987    5666667666


Q ss_pred             CCEEEEEecCC
Q psy12625        218 GTMIICTLHQP  228 (612)
Q Consensus       218 g~tvi~~~H~~  228 (612)
                       .+||+++|..
T Consensus       141 -~~vI~Vi~K~  150 (270)
T 3sop_A          141 -VNIIPVIAKA  150 (270)
T ss_dssp             -SEEEEEETTG
T ss_pred             -CcEEEEEecc
Confidence             8888888874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.87  E-value=2.1e-23  Score=218.82  Aligned_cols=132  Identities=16%  Similarity=0.155  Sum_probs=109.1

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCH
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTV  124 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv  124 (612)
                      +++++|+.+++|++++|+||||||||||+|+|+|+++|     .+|.|.++|.+.......++.+++++|          
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-----~~g~i~i~~~~e~~~~~~~~~i~~~~g----------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFG----------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-----TSCEEEEESSCCCCCSSCSSEEEEECB----------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-----CCcEEEECCeeccccccchhEEEEEeC----------
Confidence            78999999999999999999999999999999999986     579999998652111112344444430          


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy12625        125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA  204 (612)
Q Consensus       125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~  204 (612)
                                                                    |||+||++||+||..+|+++++||||+       
T Consensus       225 ----------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------  251 (330)
T 2pt7_A          225 ----------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------  251 (330)
T ss_dssp             ----------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------
T ss_pred             ----------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------
Confidence                                                          899999999999999999999999998       


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       205 ~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .++.+.|+.+...+.|+++|+|+++  ..+.+||+++|.+|+
T Consensus       252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN  291 (330)
T ss_dssp             THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence            2456778877655568999999986  578899999999885

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.87  E-value=6.9e-26  Score=235.72  Aligned_cols=160  Identities=8%  Similarity=-0.018  Sum_probs=121.0

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA  132 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~  132 (612)
                      +++|++++|+||||||||||+++|+|+++|.     .|.               +.+++|+|++.+++. |++||+.+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~-----~G~---------------~~v~~v~qd~~~~~~-t~~e~~~~~~  145 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW-----DHH---------------PRVDLVTTDGFLYPN-AELQRRNLMH  145 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS-----TTC---------------CCEEEEEGGGGBCCH-HHHHHTTCTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcccc-----CCC---------------CeEEEEecCccCCcc-cHHHHHHHHH
Confidence            7999999999999999999999999998752     221               458999999999888 9999975421


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy12625        133 HLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR  212 (612)
Q Consensus       133 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~  212 (612)
                      .    ...+.....+.+.+.++.++ .+..+..+..|||||+||+++|++++.+|+|+|+|||++.+|+..        .
T Consensus       146 ~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~  212 (312)
T 3aez_A          146 R----KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------L  212 (312)
T ss_dssp             C----TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------C
T ss_pred             h----cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------H
Confidence            1    12223334567788899888 666677888999999999999999999999999999999998621        1


Q ss_pred             HHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       213 ~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+.+.--.+|++.|+.........+|.+.+.+|+
T Consensus       213 ~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          213 MVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             CGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             HHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            2222112345556665544556678887777765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.86  E-value=8.6e-24  Score=223.16  Aligned_cols=173  Identities=14%  Similarity=0.186  Sum_probs=136.0

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCC-
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNL-  117 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~-  117 (612)
                      +++|+++++|++++|+||||||||||++.|+|+++|     .+|+|.++|.++...      ..+  +..++|++|++. 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~  222 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK  222 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-----cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence            468889999999999999999999999999999875     479999999886432      122  457999999988 


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEP  195 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEP  195 (612)
                      +++.+|++|++.++...    ...        ..+++.+|+.+..++++.+||   |||++|||+|+.+|+  +|+|| |
T Consensus       223 ~~p~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p  286 (359)
T 2og2_A          223 AKAATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G  286 (359)
T ss_dssp             CCHHHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred             cChhhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence            88999999999876421    110        135677899888888899999   999999999999999  99999 9


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHhcccceeeecCCe
Q psy12625        196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS--------ASLLNMADYLYVLTEGY  246 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~  246 (612)
                      |+|||+.++.      +++.+ .|.|+|++||...        +......+.|..+..|+
T Consensus       287 ttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge  340 (359)
T 2og2_A          287 NTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE  340 (359)
T ss_dssp             GGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred             CCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence            9999988653      45554 5899999999532        12233445666666664

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.86  E-value=9.7e-22  Score=207.79  Aligned_cols=84  Identities=18%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             ccC-CCChhhhhHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q psy12625        165 LTK-HLSGGQKKRLSIALELL---------SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN  234 (612)
Q Consensus       165 ~~~-~LSgGerqRv~ia~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~  234 (612)
                      +++ .||||||||++||++|+         .+|+||+|||||++||+..+..+++.++++.   .|+|++||. . .   
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---  332 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---  332 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---
Confidence            344 69999999999999999         8999999999999999999999999998874   689999994 3 2   


Q ss_pred             cccceeeecCCeEEEecCccCh
Q psy12625        235 MADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       235 ~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      .+|++++|++|+++..|+++++
T Consensus       333 ~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             TCSEEEEEETTEEEECCCTTTS
T ss_pred             cCCEEEEEECCEEEecCCHHHH
Confidence            8999999999999999998876

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.85  E-value=7.8e-26  Score=223.61  Aligned_cols=178  Identities=16%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch---HhhccceEEEccCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH---RMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~---~~~~~~i~yv~Q~~~l~  119 (612)
                      +.-|+|||+++++|++++|+||||||||||+|+|+|+. |       |+|.+ |.++...   ...++.++|++|++..+
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-------G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-------NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF   80 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-------TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-------CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence            45799999999999999999999999999999999976 3       67888 7654321   12356799999987765


Q ss_pred             CCCCH-HHHHH---HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH-----HHHHhhCCCEE
Q psy12625        120 ELLTV-EESLT---VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI-----ALELLSNPSII  190 (612)
Q Consensus       120 ~~lTv-~e~l~---~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i-----a~aL~~~p~il  190 (612)
                      +.++. .+++.   +..+..   ..+    .+.++++++...+. ..+   .+||||||||++|     +++++.+|+++
T Consensus        81 ~~~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~  149 (218)
T 1z6g_A           81 EDKLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD  149 (218)
T ss_dssp             HHHHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred             HHhhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence            53321 11111   000000   111    23466677654432 122   5799999999999     89999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCchHHHhcccceee
Q psy12625        191 FLDEPTTGLDYLNATNLVKLLRDMAH-------QGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      +|||||+++|..+...+.+.++++.+       .+...|+++|++. +.++..|+++.
T Consensus       150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~  206 (218)
T 1z6g_A          150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL  206 (218)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence            99999999999999999988887643       3456667777754 56667777664

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.85  E-value=3.2e-21  Score=203.15  Aligned_cols=80  Identities=29%  Similarity=0.414  Sum_probs=72.5

Q ss_pred             cCcccCCCChhhhh------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625        162 KNTLTKHLSGGQKK------RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM  235 (612)
Q Consensus       162 ~~~~~~~LSgGerq------Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~  235 (612)
                      .++++.+|||||||      |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||++|||+  ++.+.
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~  319 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA  319 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHh
Confidence            45678899999999      67788888899999999999999999999999999999988889999999995  46789


Q ss_pred             ccceeeec
Q psy12625        236 ADYLYVLT  243 (612)
Q Consensus       236 ~D~v~~L~  243 (612)
                      ||++++|+
T Consensus       320 ~d~~~~l~  327 (339)
T 3qkt_A          320 ADHVIRIS  327 (339)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999986

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.84  E-value=1.9e-22  Score=208.08  Aligned_cols=185  Identities=14%  Similarity=0.101  Sum_probs=124.8

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ..+|+++++.+++|++++|+||||||||||++.|+|...|     .+| .|.+.+.+.. ...+++++..+.|+..    
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-----~~G~~v~~~~~e~~-~~~~~~r~~~~~~~~~----   91 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLEES-VEETAEDLIGLHNRVR----   91 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESSSC-HHHHHHHHHHHHTTCC----
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEeCcCC-HHHHHHHHHHHHcCCC----
Confidence            5689999999999999999999999999999999998765     246 6655443322 2233333333333322    


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh-hhHHHHHHHHhhCCCEEEEeCCCC---
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ-KKRLSIALELLSNPSIIFLDEPTT---  197 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~~p~illlDEPts---  197 (612)
                      +++.+++.... +      ++++.++.++++++..++.  .+..+.++|.+| +||+. |+++..+|+++++||||+   
T Consensus        92 ~~~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~  161 (296)
T 1cr0_A           92 LRQSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS  161 (296)
T ss_dssp             GGGCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred             hhhccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence            12234443321 1      1222334455555433332  223346789998 67777 999999999999999999   


Q ss_pred             C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc-h--------------------HHHhcccceeeecCCeE
Q psy12625        198 G---LDY-LNATNLVKLLRDMAH-QGTMIICTLHQPS-A--------------------SLLNMADYLYVLTEGYC  247 (612)
Q Consensus       198 g---LD~-~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i  247 (612)
                      +   +|. ....++++.|+++++ .|.|||+++|+.. .                    .+.+.||+|++|++|+.
T Consensus       162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            5   565 677889999999987 5999999999951 2                    57789999999998874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.84  E-value=5.9e-23  Score=216.47  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=140.4

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ..++.+|+++.|.         .+..+|+++ +++.+||+++|+||||||||||+++|+|+.+|     ..|.|.+.|++
T Consensus        44 ~~i~~~~l~~~~~---------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFI---------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-----DIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEEC---------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-----SEEEEEEESCC
T ss_pred             CCeeecccceecC---------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CEEEEEEeccc
Confidence            3467788887762         146799999 99999999999999999999999999999886     57999998875


Q ss_pred             ccch---------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcccc--CcccC
Q psy12625         99 LQDH---------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK--NTLTK  167 (612)
Q Consensus        99 ~~~~---------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~  167 (612)
                      ..+.         ..+++.+.+++|.+.     +..+.+......            ..+.+.....|- +..  -+.+.
T Consensus       109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~~-~vl~~ld~~~  170 (347)
T 2obl_A          109 GREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQGK-NVLLMMDSVT  170 (347)
T ss_dssp             HHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTTC-EEEEEEETHH
T ss_pred             HHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhccc-cHHHHHhhHH
Confidence            2211         123456788887542     222322211100            001111111111 110  03567


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhccccee
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGT-----MIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      .||+|| ||+++|   +.+|++      |+|||+.....+.++++++.+  +|.     ||++++||.+   ..+||+++
T Consensus       171 ~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~  237 (347)
T 2obl_A          171 RYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVR  237 (347)
T ss_dssp             HHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHH
T ss_pred             HHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheE
Confidence            899999 899999   688887      999999999999999999874  577     8999999987   36799999


Q ss_pred             eecCCeEEEecCccCh
Q psy12625        241 VLTEGYCTYQGTVPGL  256 (612)
Q Consensus       241 ~L~~G~iv~~G~~~~~  256 (612)
                      +|.+|+++..|++++.
T Consensus       238 ~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          238 SILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHCSEEEEBCHHHHTT
T ss_pred             EeeCcEEEEeCCHHHc
Confidence            9999999999988765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.84  E-value=1.4e-21  Score=227.53  Aligned_cols=161  Identities=23%  Similarity=0.302  Sum_probs=126.1

Q ss_pred             HHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCH-----HHHHH
Q psy12625         73 LDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSR-----KAKES  147 (612)
Q Consensus        73 L~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-----~~~~~  147 (612)
                      ..|..++++|     ..|+|.++|+++.+                 +..+|+.|++.+...+.+......     ....+
T Consensus       385 ~~C~g~rl~~-----~~~~V~i~G~~i~~-----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~  442 (916)
T 3pih_A          385 SVCGGRRLNR-----EALSVKINGLNIHE-----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIE  442 (916)
T ss_dssp             TTTCSCCBCT-----TGGGEEETTEEHHH-----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH
T ss_pred             hhcccccCCh-----HhcCcEECCccHHH-----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH
Confidence            3445555554     57999999988632                 223677788777554432211000     01123


Q ss_pred             HHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy12625        148 KVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICT  224 (612)
Q Consensus       148 ~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~  224 (612)
                      +..+.+..+||.+. .++.+.+|||||||||+||++|+.+|+  +|+|||||+|||+.....+++.|++++++|.|||++
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            34567888999865 689999999999999999999999887  999999999999999999999999999889999999


Q ss_pred             ecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        225 LHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       225 ~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +||+. . ...||+|++|      ++|++++.|+++++.
T Consensus       523 tHd~~-~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          523 EHDEE-V-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL  559 (916)
T ss_dssp             CCCHH-H-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred             eCCHH-H-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence            99974 3 4569999999      899999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.83  E-value=4.4e-22  Score=200.01  Aligned_cols=171  Identities=11%  Similarity=0.050  Sum_probs=108.6

Q ss_pred             ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625         40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~  119 (612)
                      .+++++|+|+|+++++|++++|+||||||||||+++|+|++.         .+.++        ..++.++|++|++ ++
T Consensus         9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG---------~~~~~--------~~~~~i~~v~~d~-~~   70 (245)
T 2jeo_A            9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG---------QNEVE--------QRQRKVVILSQDR-FY   70 (245)
T ss_dssp             --------------CCSEEEEEECSTTSSHHHHHHHHHHHHT---------GGGSC--------GGGCSEEEEEGGG-GB
T ss_pred             CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc---------hhccc--------ccCCceEEEeCCc-Cc
Confidence            366789999999999999999999999999999999999642         22222        2467799999985 67


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCC
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGL  199 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgL  199 (612)
                      +.+|+.|++.+...... ...+.....+.+.+.++.+  .+..+..+..+|+||+||+++ ++++.+|+++++|||....
T Consensus        71 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~  146 (245)
T 2jeo_A           71 KVLTAEQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY  146 (245)
T ss_dssp             CCCCHHHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred             cccCHhHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence            78999999876532211 0111111233445555543  456677889999999999988 5888899999999999888


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-cccceeeecCCe
Q psy12625        200 DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLN-MADYLYVLTEGY  246 (612)
Q Consensus       200 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~  246 (612)
                      |..        +.++  .+.+|++++|+.. .+.+ +++++   .+|+
T Consensus       147 ~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          147 SQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR  180 (245)
T ss_dssp             SHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C---
T ss_pred             cHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC
Confidence            864        2222  3789999999743 3333 33434   5564

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.82  E-value=1.5e-20  Score=208.91  Aligned_cols=78  Identities=18%  Similarity=0.282  Sum_probs=71.5

Q ss_pred             ccCCC-ChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        165 LTKHL-SGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       165 ~~~~L-SgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      +++.| ||||||||+||++|+.+|  ++|||||||+|||+.++..+.+.|+++++ |.|||++||++.  +...||++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence            35567 999999999999999999  99999999999999999999999999987 899999999974  4567999999


Q ss_pred             ecCC
Q psy12625        242 LTEG  245 (612)
Q Consensus       242 L~~G  245 (612)
                      |++|
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9665

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.82  E-value=1.7e-21  Score=230.41  Aligned_cols=173  Identities=15%  Similarity=0.107  Sum_probs=122.0

Q ss_pred             eeEEEEe-----EEEEEEeeccccccccccccccceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHCCCCCCCCC
Q psy12625         19 FNLLFQD-----ISYSALYYDTHSYSIKSKDILKDISGVFVS-------KELSVILGPSGSGKTKLLDILAGYRRPKKTE   86 (612)
Q Consensus        19 ~~l~~~~-----ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~   86 (612)
                      ..|+++|     |++.+.         +++.+++|+++.+++       |++++|+||||||||||||++ |+..+    
T Consensus       749 ~~l~i~~~rHP~l~~~~~---------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFF---------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----  814 (1022)
T ss_dssp             CCEEEEEECCCC---------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----
T ss_pred             ceEEEEeccccEEEEEec---------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----
Confidence            3589999     887651         346799999999987       999999999999999999999 87641    


Q ss_pred             CceeEEEECCEeccchHhhccceE-EEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcc
Q psy12625         87 TNSGYIEINETRLQDHRMLRKESC-YIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL  165 (612)
Q Consensus        87 ~~~G~I~~~g~~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  165 (612)
                                         ..++| ||||+..   .+||.|++.                        ..+|+.+.....
T Consensus       815 -------------------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~  848 (1022)
T 2o8b_B          815 -------------------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSG  848 (1022)
T ss_dssp             -------------------HHTTTCCEESSEE---EECCCSBEE------------------------EECC--------
T ss_pred             -------------------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhc
Confidence                               12345 9999763   345555431                        112332222333


Q ss_pred             cCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeec
Q psy12625        166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA-TNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      .+.+|+++++ +++|++++++|+++||||||+|+|+... ..+.+.|+.++++ |.++|++||++. .+...+|++.++ 
T Consensus       849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-  925 (1022)
T 2o8b_B          849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-  925 (1022)
T ss_dssp             -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-
T ss_pred             hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-
Confidence            4567777664 9999999999999999999999999984 5578999999876 999999999975 566789999887 


Q ss_pred             CCeEE--EecCcc
Q psy12625        244 EGYCT--YQGTVP  254 (612)
Q Consensus       244 ~G~iv--~~G~~~  254 (612)
                      +|++.  +.|+++
T Consensus       926 ~g~~~~~~~~~~~  938 (1022)
T 2o8b_B          926 LGHMACMVENECE  938 (1022)
T ss_dssp             EEEEEEC------
T ss_pred             cCeEEEEEecCcc
Confidence            58887  555544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=2.4e-23  Score=231.90  Aligned_cols=172  Identities=12%  Similarity=0.105  Sum_probs=129.2

Q ss_pred             cccccccceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCC
Q psy12625         41 KSKDILKDISG-VFVSKELSVILGPSGSGKTKLLDI--LAGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDN  116 (612)
Q Consensus        41 ~~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~  116 (612)
                      +..++|++||+ .+++||+++|+||||||||||+++  ++|+.+|     .+|.|+++|++.... ...++.+||++|++
T Consensus        23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~   97 (525)
T 1tf7_A           23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEETPQDIIKNARSFGWDLAKL   97 (525)
T ss_dssp             CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred             CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence            35779999999 999999999999999999999999  7899875     479999999873211 23456789999975


Q ss_pred             CCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC
Q psy12625        117 LLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT  196 (612)
Q Consensus       117 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt  196 (612)
                      ...++      +.+   .... . .     +...++++.+++.+..++.+..|||||             |+++++||||
T Consensus        98 ~~~~~------l~~---~~~~-~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t  148 (525)
T 1tf7_A           98 VDEGK------LFI---LDAS-P-D-----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVT  148 (525)
T ss_dssp             HHTTS------EEE---EECC-C-C-----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECST
T ss_pred             hccCc------EEE---EecC-c-c-----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHH
Confidence            43211      100   1100 0 0     011234455566666677777888886             5688999999


Q ss_pred             C-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhcccceeeecCCe
Q psy12625        197 T-----GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS--------LLNMADYLYVLTEGY  246 (612)
Q Consensus       197 s-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G~  246 (612)
                      +     +||+..+..+.+++++++++|+|||+++|++...        ...+||+|++|++|+
T Consensus       149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~  211 (525)
T 1tf7_A          149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL  211 (525)
T ss_dssp             TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence            8     5699999999999999988899999999998742        345699999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=6.6e-21  Score=212.24  Aligned_cols=156  Identities=10%  Similarity=0.071  Sum_probs=123.0

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT  129 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~  129 (612)
                      ++.+++|++++|+||||||||||++.++|...+      +|+               +.+.+++|++.    .++.++. 
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~------~G~---------------~vi~~~~ee~~----~~l~~~~-  328 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA------NKE---------------RAILFAYEESR----AQLLRNA-  328 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT------TTC---------------CEEEEESSSCH----HHHHHHH-
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh------CCC---------------CEEEEEEeCCH----HHHHHHH-
Confidence            458999999999999999999999999998764      122               12455566541    1122221 


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q psy12625        130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL-----NA  204 (612)
Q Consensus       130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~-----~~  204 (612)
                        .  +.  ..+       +++ +...|+.+..+..+.+|||||+||+.+|+++..+|+++++| ||+|||..     .+
T Consensus       329 --~--~~--g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~  393 (525)
T 1tf7_A          329 --Y--SW--GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR  393 (525)
T ss_dssp             --H--TT--SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred             --H--Hc--CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence              1  11  122       112 33567878888899999999999999999999999999999 99999999     99


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhcccceeeecCCe
Q psy12625        205 TNLVKLLRDMAHQGTMIICTLHQPS---------ASLLNMADYLYVLTEGY  246 (612)
Q Consensus       205 ~~i~~~l~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~~G~  246 (612)
                      ..+.++++.+++.|.|||+++|+..         ..+..+||+|++|++|+
T Consensus       394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            9999999999889999999999971         34667899999999887

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.81  E-value=8.2e-20  Score=211.40  Aligned_cols=135  Identities=24%  Similarity=0.394  Sum_probs=113.8

Q ss_pred             CCCCHHHHHHHHHHhccCCC---CCH---HHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEE
Q psy12625        120 ELLTVEESLTVAAHLKLGNQ---YSR---KAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SII  190 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~il  190 (612)
                      ..+||.|++.|..++.++..   ..+   ++..+++ +.++.+||... .++.+.+|||||||||+||++|..+|  +++
T Consensus       450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll  528 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY  528 (972)
T ss_dssp             HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred             hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence            34899999999777654320   000   2334455 45899999875 79999999999999999999999985  999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChh
Q psy12625        191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLV  257 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  257 (612)
                      +|||||+|||+.....+++.|++|++.|.|||+++|++. . ...||+|++|      ++|++++.|+++++.
T Consensus       529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~  599 (972)
T 2r6f_A          529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  599 (972)
T ss_dssp             EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence            999999999999999999999999989999999999974 4 5689999999      789999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.81  E-value=3e-20  Score=214.67  Aligned_cols=184  Identities=20%  Similarity=0.242  Sum_probs=133.3

Q ss_pred             CCCCcHHHHHHHHHCCCCCCCC----CCceeEEEECCEeccchHh--hccceEEEccCCCC---CC----CCCHHHHHHH
Q psy12625         64 PSGSGKTKLLDILAGYRRPKKT----ETNSGYIEINETRLQDHRM--LRKESCYIMQDNLL---QE----LLTVEESLTV  130 (612)
Q Consensus        64 psGsGKSTLL~~l~g~~~p~~~----~~~~G~I~~~g~~~~~~~~--~~~~i~yv~Q~~~l---~~----~lTv~e~l~~  130 (612)
                      .+..||++|.+.+....-|...    .+.+|+|.++|+++.+...  ....++++.|.+..   ..    .++- ++...
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  348 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA  348 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence            4567999999998875433211    1357899999988754211  11222232221110   00    0110 11111


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cCcccCCCChhhhhHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHH
Q psy12625        131 AAHLKLGNQYSRKAKESKVDSIADSLSISTC-KNTLTKHLSGGQKKRLSIALELLSNP--SIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~p--~illlDEPtsgLD~~~~~~i  207 (612)
                      +..+       .++..++++ .++.+||.+. .++.+.+|||||||||+||++|..+|  .+++|||||+|||+.....+
T Consensus       349 ~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L  420 (842)
T 2vf7_A          349 LQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL  420 (842)
T ss_dssp             HHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred             HHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence            1111       133455666 6889999876 79999999999999999999999999  59999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEecCCchHHHhcccceeee------cCCeEEEecCccChhh
Q psy12625        208 VKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL------TEGYCTYQGTVPGLVP  258 (612)
Q Consensus       208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  258 (612)
                      .++|++|++.|.|||+++|++.  +.+.||+|++|      ++|++++.|+++++..
T Consensus       421 ~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          421 LSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             HHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             HHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence            9999999989999999999974  56789999999      7899999999987643

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.79  E-value=3e-20  Score=217.23  Aligned_cols=154  Identities=19%  Similarity=0.161  Sum_probs=113.5

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HCCCCCCCCCCceeEEEECCEeccchHhhccceEEE
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDIL--------AGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYI  112 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l--------~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv  112 (612)
                      +.+.+++|+|+++++|++++|+||||||||||||++        .|...|     .++..                ++.+
T Consensus       647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp-----a~~~~----------------~~~~  705 (934)
T 3thx_A          647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP-----CESAE----------------VSIV  705 (934)
T ss_dssp             -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS-----EEEEE----------------EECC
T ss_pred             CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc-----ccccc----------------chHH
Confidence            346799999999999999999999999999999999        443322     11100                1100


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEE
Q psy12625        113 MQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSII  190 (612)
Q Consensus       113 ~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~il  190 (612)
                         +                                  +++..+|+.   +....++|+|++++..+|+++  +++|+++
T Consensus       706 ---d----------------------------------~i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLl  745 (934)
T 3thx_A          706 ---D----------------------------------CILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLI  745 (934)
T ss_dssp             ---S----------------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred             ---H----------------------------------HHHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence               0                                  011112221   223356888888888888888  9999999


Q ss_pred             EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        191 FLDEPTTGLDYLNATNL-VKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       191 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||||+|||+.....+ ..+++.+++ .|.++|++||+.  ++..++|++..+.+|++...++.+++.
T Consensus       746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~  812 (934)
T 3thx_A          746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT  812 (934)
T ss_dssp             EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence            99999999999999888 677788876 599999999995  457899999999999999988877654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.78  E-value=6.9e-20  Score=185.81  Aligned_cols=132  Identities=20%  Similarity=0.324  Sum_probs=100.4

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc-eeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~-~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|     . +|+|.++|.++...  .+...++++|.       
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-----~~~G~I~~~g~~i~~~--~~~~~~~v~q~-------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----TKSYHIITIEDPIEYV--FKHKKSIVNQR-------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-----HCCCEEEEEESSCCSC--CCCSSSEEEEE-------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC-----CCCCEEEEcCCcceee--cCCcceeeeHH-------
Confidence            5899999  999999999999999999999999999875     4 79999988764210  11112222221       


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                                                      .+|++.      ..+      |++||++|..+|+++++||||   |+.
T Consensus        79 --------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~  111 (261)
T 2eyu_A           79 --------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLE  111 (261)
T ss_dssp             --------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred             --------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence                                            233321      112      899999999999999999999   988


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +...++   +. ++.|.+|++++|+.+  ....+||++.|..
T Consensus       112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~  147 (261)
T 2eyu_A          112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred             HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence            866544   33 457999999999975  4688999999864

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.77  E-value=3.6e-19  Score=164.87  Aligned_cols=83  Identities=29%  Similarity=0.404  Sum_probs=75.0

Q ss_pred             cCcccCCCChhhhhHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc
Q psy12625        162 KNTLTKHLSGGQKKRLSIA------LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM  235 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia------~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~  235 (612)
                      .++++++||||||||++||      ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++  ++.+.
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHh
Confidence            4677899999999999876      899999999999999999999999999999999987789999999997  35789


Q ss_pred             ccceeeec--CCe
Q psy12625        236 ADYLYVLT--EGY  246 (612)
Q Consensus       236 ~D~v~~L~--~G~  246 (612)
                      ||++++|+  +|.
T Consensus       129 ~d~ii~l~~~~g~  141 (148)
T 1f2t_B          129 ADHVIRISLENGS  141 (148)
T ss_dssp             CSEEEEEEEETTE
T ss_pred             CCEEEEEEcCCCe
Confidence            99999994  453

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=3.3e-21  Score=199.67  Aligned_cols=157  Identities=14%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC-CCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY-RRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~-~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~  119 (612)
                      +++.+++++++++      +|+||||||||||++.|+|. ..|     .+| +.++|.++..... .+.+++++|++...
T Consensus         9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-----~~g-i~~~g~~~~~t~~-~~~~~~~~q~~~~~   75 (301)
T 2qnr_A            9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-----ERV-ISGAAEKIERTVQ-IEASTVEIEERGVK   75 (301)
T ss_dssp             ---------CEEE------EEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CC
T ss_pred             CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-----CCC-cccCCcccCCcce-EeeEEEEecCCCcc
Confidence            6678999999998      99999999999999999997 553     567 8888876533212 35689999998888


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCC-
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG-  198 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsg-  198 (612)
                      ..+|+.|+..++.....     .+..+..++.      +.+..+.++.++|||||||+.+||+++    ++++||||++ 
T Consensus        76 ~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~  140 (301)
T 2qnr_A           76 LRLTVVDTPGYGDAINC-----RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHG  140 (301)
T ss_dssp             EEEEEEEEC----------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred             cCcchhhhhhhhhhcCc-----HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence            88999998877543210     0000111222      123346778899999999999999885    9999999984 


Q ss_pred             CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy12625        199 LDYLNATNLVKLLRDMAH-QGTMIICTLHQPS  229 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~  229 (612)
                      ||+...    +.++++.+ .+.++|++.||..
T Consensus       141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            999873    66666665 3789999999964

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.77  E-value=4.2e-20  Score=215.44  Aligned_cols=155  Identities=11%  Similarity=0.099  Sum_probs=106.8

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      ++.|++|+|+++++|++++|+||||||||||||++++....    ...|.      .+.. .  ...++.   -+.++  
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~----aq~g~------~vpa-~--~~~i~~---~d~i~--  720 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM----AQIGS------YVPA-E--EATIGI---VDGIF--  720 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH----HHHTC------CBSS-S--EEEEEC---CSEEE--
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH----hhcCc------cccc-h--hhhhhH---HHHHH--
Confidence            57799999999999999999999999999999999864321    00010      0000 0  001111   11111  


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                                                      ..+|+.+......+.+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus       721 --------------------------------~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~  767 (918)
T 3thx_B          721 --------------------------------TRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST  767 (918)
T ss_dssp             --------------------------------EEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred             --------------------------------HhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence                                            12233333344456799999999999999 899999999999999999


Q ss_pred             HHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhcccceee-ecCCeEEE
Q psy12625        202 LNATNLV-KLLRDMAH-QGTMIICTLHQPSASLLNMADYLYV-LTEGYCTY  249 (612)
Q Consensus       202 ~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~  249 (612)
                      .....+. .+++.+++ .|.++|++||++.  +.+++|+.-- +.++++.+
T Consensus       768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence            9999998 77888876 6999999999964  4678887642 45555544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.76  E-value=2.4e-21  Score=189.50  Aligned_cols=146  Identities=15%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC--CCCCHHHHHHH
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ--ELLTVEESLTV  130 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~  130 (612)
                      .++|++++|+||||||||||+++|+|++.|                         .++|++|++.++  ..+|++++..+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------------~i~~v~~d~~~~~~~~~~~~~~~~~   57 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------------RVALLPMDHYYKDLGHLPLEERLRV   57 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------------CeEEEecCccccCcccccHHHhcCC
Confidence            578999999999999999999999997641                         489999998776  56799888654


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh----hHHHHHHHHhhCCCEEEEeCCCCC-------C
Q psy12625        131 AAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK----KRLSIALELLSNPSIIFLDEPTTG-------L  199 (612)
Q Consensus       131 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer----qRv~ia~aL~~~p~illlDEPtsg-------L  199 (612)
                      ..  .    .+.....+++.+.++.+++.+..+.++.++|+|||    ||+++|++++.+|+++++||||++       |
T Consensus        58 ~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l  131 (211)
T 3asz_A           58 NY--D----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV  131 (211)
T ss_dssp             CT--T----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred             CC--C----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence            21  1    11122345677888888888877888889999974    789999999999999999999999       9


Q ss_pred             CHHHHHHHHHHHHHHH-hCCCEEEEEecCCc
Q psy12625        200 DYLNATNLVKLLRDMA-HQGTMIICTLHQPS  229 (612)
Q Consensus       200 D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~  229 (612)
                      |+.....+.+.+++.. ++|.|++.++|+..
T Consensus       132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          132 DADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999998764 57899998888743

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.76  E-value=3.8e-18  Score=185.32  Aligned_cols=77  Identities=22%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             ccCCCChhhhhHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        165 LTKHLSGGQKKRLSIALELL----SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      .+..||||||||++||++|+    .+|++++|||||++||+..+..+.+.|+++.+++.++|+++|++  .....||+++
T Consensus       330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~  407 (430)
T 1w1w_A          330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV  407 (430)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEE
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEE
Confidence            34569999999999999999    57999999999999999999999999999876688999999994  4578899999


Q ss_pred             eec
Q psy12625        241 VLT  243 (612)
Q Consensus       241 ~L~  243 (612)
                      .+.
T Consensus       408 ~~~  410 (430)
T 1w1w_A          408 GVY  410 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.75  E-value=1.8e-19  Score=177.75  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCC--CCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKK--TETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL  128 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~--~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l  128 (612)
                      +-+++|++++|+||||||||||+++|+|...+..  +....|.+++++.+...    ++.+++++|+..+.+. |+.||+
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~----~~~i~~~~~~~~~~~~-~~~~~~   94 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR----PERIREIAQNRGLDPD-EVLKHI   94 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC----HHHHHHHHHHcCCCHH-HHhhcE
Confidence            4799999999999999999999999999544311  11134577777654211    1224444554444332 444443


Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh-hhhHHHHHHHHhh-------CCCEEEEeCCCCCCC
Q psy12625        129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG-QKKRLSIALELLS-------NPSIIFLDEPTTGLD  200 (612)
Q Consensus       129 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~~-------~p~illlDEPtsgLD  200 (612)
                      .+.                                   ...+++ +++++..+++++.       +|+++++||||+++|
T Consensus        95 ~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~  139 (231)
T 4a74_A           95 YVA-----------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR  139 (231)
T ss_dssp             EEE-----------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred             EEE-----------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence            221                                   011222 2223444444444       899999999999999


Q ss_pred             HH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCc---hHHHhcccceeeecCCe
Q psy12625        201 YL-------N-----ATNLVKLLRDMAH-QGTMIICTLHQPS---ASLLNMADYLYVLTEGY  246 (612)
Q Consensus       201 ~~-------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~---~~i~~~~D~v~~L~~G~  246 (612)
                      +.       .     ..++++.|+++++ .|.|||+++|+..   ..+...+|+++.|++|+
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            84       2     2378888888876 5999999999533   13678899999998753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.74  E-value=3.3e-20  Score=209.62  Aligned_cols=196  Identities=16%  Similarity=0.210  Sum_probs=122.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccce----------EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDI----------SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS   89 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~   89 (612)
                      .++++||+..|..        ..+++|+.+          +++++.   ++|+|||||||||||++|+|+..|    ..+
T Consensus        10 ~i~~~~l~~~~~~--------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P----~~s   74 (608)
T 3szr_A           10 SVAENNLCSQYEE--------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP----RGS   74 (608)
T ss_dssp             ----------CHH--------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------
T ss_pred             hhhhhhhhHHHHH--------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC----CCC
Confidence            5788999987721        223444443          245544   999999999999999999999765    258


Q ss_pred             eEEEECCEecc--c---hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc
Q psy12625         90 GYIEINETRLQ--D---HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT  164 (612)
Q Consensus        90 G~I~~~g~~~~--~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  164 (612)
                      |.|+++|.++.  .   ...+++.++|++|++.+++.+||+|++.++........                         
T Consensus        75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------------------  129 (608)
T 3szr_A           75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------------------  129 (608)
T ss_dssp             --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------------------
T ss_pred             CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------------------
Confidence            99999998852  1   13467889999999999999999999987543211000                         


Q ss_pred             ccCCCChhhhhHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch---HHH
Q psy12625        165 LTKHLSGGQKKRLSIALELLSNPSIIFLDEP------TTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQPSA---SLL  233 (612)
Q Consensus       165 ~~~~LSgGerqRv~ia~aL~~~p~illlDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H~~~~---~i~  233 (612)
                           .+..++++.++.+...+|+++++|||      |+|||+..+.++.++++++.+  .+.++++++|+.+.   .+.
T Consensus       130 -----~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l  204 (608)
T 3szr_A          130 -----MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL  204 (608)
T ss_dssp             -----SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred             -----cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence                 01112233333344568999999999      999999999999999999754  46788899998651   112


Q ss_pred             hcc--------cceeeecCCeEEEecCccChhhHH
Q psy12625        234 NMA--------DYLYVLTEGYCTYQGTVPGLVPYL  260 (612)
Q Consensus       234 ~~~--------D~v~~L~~G~iv~~G~~~~~~~~f  260 (612)
                      +++        ..|.++.++..+..|+.+++...+
T Consensus       205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l  239 (608)
T 3szr_A          205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV  239 (608)
T ss_dssp             HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred             HHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence            222        346788888888888766555443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.73  E-value=1.1e-19  Score=188.20  Aligned_cols=150  Identities=15%  Similarity=0.108  Sum_probs=109.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh--ccceEEEccCCCCCCCCCHHH
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML--RKESCYIMQDNLLQELLTVEE  126 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~--~~~i~yv~Q~~~l~~~lTv~e  126 (612)
                      +|++++|+||||||||||++.|+|+++|     .+|+|.++|.++...      ..+  +..++|++|++.+.|..|++|
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~  175 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYD  175 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT-----TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh-----cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH
Confidence            7999999999999999999999999886     479999999886321      122  357999999999999899999


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATN  206 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~  206 (612)
                      ++.++..-.    ..        ..+++..|+.+..+..+   +..++||++|||+++.+|+.++|     .||+.+..+
T Consensus       176 ~v~~~~~~~----~d--------~~llDt~G~~~~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~  235 (304)
T 1rj9_A          176 AVQAMKARG----YD--------LLFVDTAGRLHTKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQN  235 (304)
T ss_dssp             HHHHHHHHT----CS--------EEEECCCCCCTTCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTH
T ss_pred             HHHHHHhCC----CC--------EEEecCCCCCCchHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHH
Confidence            987653211    00        01233445544333333   44458999999999999994444     455555556


Q ss_pred             HHHHHHHHHh-CCCEEEEEecCCc
Q psy12625        207 LVKLLRDMAH-QGTMIICTLHQPS  229 (612)
Q Consensus       207 i~~~l~~l~~-~g~tvi~~~H~~~  229 (612)
                      +++.++++.+ .|.|+|++||+..
T Consensus       236 ~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          236 GLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHHcCCcEEEEECCcc
Confidence            7777777765 4899999999854

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.73  E-value=6.7e-19  Score=202.47  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=108.1

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-CCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR-PKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~  119 (612)
                      +++.+++|+|++   |++++|+||||||||||||+|+|+.. +     ..|.+.    +     ..+..+++++|   ++
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-----~~G~~v----p-----a~~~~i~~v~~---i~  623 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-----QVGSFV----P-----AEEAHLPLFDG---IY  623 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-----TTTCCB----S-----SSEEEECCCSE---EE
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-----ccCcee----e-----hhccceeeHHH---hh
Confidence            346799999998   99999999999999999999999753 2     234321    1     11345777776   55


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHH--hhCCCEEEEeCC--
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALEL--LSNPSIIFLDEP--  195 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~p~illlDEP--  195 (612)
                      +.+++.|++.                                     .++|+|+++++.+++++  +++|+++|||||  
T Consensus       624 ~~~~~~d~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr  666 (765)
T 1ewq_A          624 TRIGASDDLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR  666 (765)
T ss_dssp             EECCC-------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred             ccCCHHHHHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence            5566666542                                     13689999999999999  999999999999  


Q ss_pred             -CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        196 -TTGLDYLNA-TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       196 -tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                       |++||..+. ..+++.|++   .|.++|++||+..  ..+++  .-.+.++++.....
T Consensus       667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~~  718 (765)
T 1ewq_A          667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAREE  718 (765)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEECC
T ss_pred             CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEEc
Confidence             999999875 578887766   5889999999953  45555  23344555555443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.71  E-value=1.3e-19  Score=174.79  Aligned_cols=159  Identities=13%  Similarity=0.083  Sum_probs=107.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK  135 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~  135 (612)
                      |++++|+||||||||||+++|+|+++      .+| |.++|.+..+...+++.+||++|+.  ....   +++   +++.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~   65 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG   65 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc
Confidence            78999999999999999999999875      357 8888877544345678899999975  1111   111   0111


Q ss_pred             cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q psy12625        136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL-SIAL---ELLSNPSIIFLDE--PTTGLDYLNATNLVK  209 (612)
Q Consensus       136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia~---aL~~~p~illlDE--PtsgLD~~~~~~i~~  209 (612)
                      ..  .++             ..-....+++...+|+|||+++ ++++   |++.+|+++++||  |+..+|......+.+
T Consensus        66 ~~--~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~  130 (189)
T 2i3b_A           66 LE--PPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ  130 (189)
T ss_dssp             CC--CCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred             cc--CCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence            00  000             0001133445567999999998 4454   5899999999999  899999875554444


Q ss_pred             HHHHHHhCCCEEEE----EecCCchHHHhcccceeeecCCeEEEec
Q psy12625        210 LLRDMAHQGTMIIC----TLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       210 ~l~~l~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      ++    ++..++|+    ++|+.+   ..+.|+|..+.+|+++.-.
T Consensus       131 ~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          131 TL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             HH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred             HH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence            44    44444443    238854   3578999999999987754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.70  E-value=3.2e-19  Score=173.49  Aligned_cols=185  Identities=15%  Similarity=0.075  Sum_probs=100.8

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe-
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-   98 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~-   98 (612)
                      .|+++|+++.|          + ..++++  +.+++|+.++|+|+||||||||+|.|+|........+..|.+...+.- 
T Consensus         3 ~l~~~~~~~~~----------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~   69 (210)
T 1pui_A            3 NLNYQQTHFVM----------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE   69 (210)
T ss_dssp             --------CEE----------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE
T ss_pred             chhhhhhhhee----------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE
Confidence            47889999887          2 357888  789999999999999999999999999987100001234544331110 


Q ss_pred             ccchHhhccceEEEccCCCCCCCCC---HHHHHHHHHHh-cc--------CCCCCHHHHHHHHHHHHHHcCCccc-cCcc
Q psy12625         99 LQDHRMLRKESCYIMQDNLLQELLT---VEESLTVAAHL-KL--------GNQYSRKAKESKVDSIADSLSISTC-KNTL  165 (612)
Q Consensus        99 ~~~~~~~~~~i~yv~Q~~~l~~~lT---v~e~l~~~~~l-~~--------~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~  165 (612)
                      +.+...+....|+..++   .+.-.   .+..+...... +.        .........++.+.++++..++... ..++
T Consensus        70 ~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK  146 (210)
T 1pui_A           70 VADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK  146 (210)
T ss_dssp             EETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec
Confidence            00000000000110000   00000   01111111100 00        0000011123345566777787654 3677


Q ss_pred             cCCCChhhhhH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy12625        166 TKHLSGGQKKR-LSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTM  220 (612)
Q Consensus       166 ~~~LSgGerqR-v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t  220 (612)
                      +..+|+||||| +..+++++.+|+++++|||||++|..+..++.+.|.++.++|.+
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            88899999999 89999999999999999999999999999999999998766543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.69  E-value=3.1e-18  Score=198.06  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      +++.+++|+|++ ++|++++|+||||||||||||+|+|+..+.    ..|      ..+..   .+..++++.|   +++
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q~G------~~vpa---~~~~i~~~~~---i~~  655 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----YIG------SYVPA---QKVEIGPIDR---IFT  655 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----TTT------CCBSS---SEEEECCCCE---EEE
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----hcC------cccch---hcccceeHHH---HHh
Confidence            346799999999 999999999999999999999999974310    112      11111   1234555554   455


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD  200 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD  200 (612)
                      .+++.|++...                                  .+.+|+|++ +++.+...+++|+++|||||++|+|
T Consensus       656 ~~~~~d~l~~~----------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd  700 (800)
T 1wb9_A          656 RVGAADDLASG----------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS  700 (800)
T ss_dssp             EEC---------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred             hCCHHHHHHhh----------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence            55665554221                                  123566665 4555556799999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        201 YLNATNL-VKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       201 ~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      +.....+ .++++.+++ .|.++|++||++.  +..++|++..+.+|++.+....
T Consensus       701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~  753 (800)
T 1wb9_A          701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEHG  753 (800)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEET
T ss_pred             hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcC
Confidence            9887776 788888887 5999999999974  4578999988999988776443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.69  E-value=4e-17  Score=166.87  Aligned_cols=151  Identities=17%  Similarity=0.197  Sum_probs=108.7

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA  131 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~  131 (612)
                      -+++|++++|+||||||||||++.+++...       .|++ +.|.+...    ...+.|+..++...   .+.+.+   
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-------~g~~-~~g~~~~~----~~~v~~~~~e~~~~---~~~~r~---   87 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-------GGPD-LLEVGELP----TGPVIYLPAEDPPT---AIHHRL---   87 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH-------TCCC-TTCCCCCC----CCCEEEEESSSCHH---HHHHHH---
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-------cCCC-cCCCccCC----CccEEEEECCCCHH---HHHHHH---
Confidence            488999999999999999999999998654       2444 23443211    34577877655320   111111   


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q psy12625        132 AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT--GLDYLNA---TN  206 (612)
Q Consensus       132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts--gLD~~~~---~~  206 (612)
                      ..+.  ....    ....+++++.+++.+..++.+..||+||+|++   ++++.+|+++++||||+  ++|....   .+
T Consensus        88 ~~~g--~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~  158 (279)
T 1nlf_A           88 HALG--AHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ  158 (279)
T ss_dssp             HHHH--TTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred             HHHH--hhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence            1111  1122    13356778889998888889999999998865   68889999999999999  9998544   88


Q ss_pred             HHHHHHHHHh-CCCEEEEEecCCc
Q psy12625        207 LVKLLRDMAH-QGTMIICTLHQPS  229 (612)
Q Consensus       207 i~~~l~~l~~-~g~tvi~~~H~~~  229 (612)
                      +++.|+++++ .|+|||+++|+..
T Consensus       159 ~~~~L~~l~~~~g~tvi~i~H~~~  182 (279)
T 1nlf_A          159 VIGRMEAIAADTGCSIVFLHHASK  182 (279)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             HHHHHHHHHHHcCCEEEEEecCCC
Confidence            8999999975 6999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.69  E-value=7.2e-19  Score=185.73  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             cccce-EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC--CCCCCCCceeE-EEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDILAGYR--RPKKTETNSGY-IEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~--~p~~~~~~~G~-I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      .|+++ ++.+++|++++|+||||||||||++.+++..  +|..+ ...|+ |++++++..    .++++++++|...+++
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~G-g~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~  193 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENTF----RPERIREIAQNRGLDP  193 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-SCSCEEEEEESSSCC----CHHHHHHHHHTTTCCH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcC-CCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCH
Confidence            45665 5899999999999999999999999999987  33110 11367 888886531    1345667777665544


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-------hCCCEEEEe
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-------SNPSIIFLD  193 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-------~~p~illlD  193 (612)
                      . ++.||+.+..      ...                            |.+|+|++.++++++       .+|+++++|
T Consensus       194 ~-~v~~ni~~~~------~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD  238 (349)
T 1pzn_A          194 D-EVLKHIYVAR------AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVD  238 (349)
T ss_dssp             H-HHGGGEEEEE------CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred             H-HHhhCEEEEe------cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence            3 4444432210      011                            334555555555555       689999999


Q ss_pred             CCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        194 EPTTGLDYLN------------ATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       194 EPtsgLD~~~------------~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      |||+++|+..            ..++++.|+++++ .|+|||+++|... ..-..++.......|+++.++.
T Consensus       239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred             CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence            9999999852            4667777788776 5899999999865 3333445556666677665554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.68  E-value=3.3e-18  Score=168.56  Aligned_cols=169  Identities=10%  Similarity=0.008  Sum_probs=112.8

Q ss_pred             cccccceEE-EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhc---cceEEEccCCCC
Q psy12625         43 KDILKDISG-VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLR---KESCYIMQDNLL  118 (612)
Q Consensus        43 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~---~~i~yv~Q~~~l  118 (612)
                      .+.|+++.+ .+++|++++|+||||||||||++.|++...+     ..|.+.+.+.+.. ....+   ..+++.+|+...
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-----~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   82 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-----DGDPCIYVTTEES-RDSIIRQAKQFNWDFEEYIE   82 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-----HTCCEEEEESSSC-HHHHHHHHHHTTCCCGGGBT
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEcccC-HHHHHHHHHHhcchHHHHhh
Confidence            457888885 8999999999999999999999999987653     3466666544321 11111   122332222100


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCC--EEEEeCCC
Q psy12625        119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPS--IIFLDEPT  196 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~--illlDEPt  196 (612)
                      . .+.+         ..   ...            ..++ ...   .....|.+|.++...+.....+|+  ++++||||
T Consensus        83 ~-~~~~---------~~---~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~  133 (235)
T 2w0m_A           83 K-KLII---------ID---ALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS  133 (235)
T ss_dssp             T-TEEE---------EE---CCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred             C-CEEE---------Ee---ccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence            0 0000         00   000            0001 111   123459999998888888888999  99999999


Q ss_pred             CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhcccceeeecCCe
Q psy12625        197 TGL--DYLNATNLVKLLRDMAH-QGTMIICTLHQPS-------ASLLNMADYLYVLTEGY  246 (612)
Q Consensus       197 sgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G~  246 (612)
                      +++  |+....++++.|+++++ .|.|||+++|+..       ..+.+.||++++|++..
T Consensus       134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            888  99999999999999976 6999999999972       24788999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.68  E-value=1.8e-17  Score=175.10  Aligned_cols=128  Identities=24%  Similarity=0.366  Sum_probs=92.5

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA  131 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~  131 (612)
                      ...+|++++|+|||||||||||++|+|+++|.    ..|.|...+.++ + ...+...+++.|........+..+     
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~----~~~~i~t~ed~~-e-~~~~~~~~~v~q~~~~~~~~~~~~-----  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT----KYHHILTIEDPI-E-FVHESKKCLVNQREVHRDTLGFSE-----  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH----CCCEEEEEESSC-C-SCCCCSSSEEEEEEBTTTBSCHHH-----
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC----CCcEEEEccCcH-H-hhhhccccceeeeeeccccCCHHH-----
Confidence            67899999999999999999999999998751    246665443332 1 112334556666543222222111     


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy12625        132 AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL  211 (612)
Q Consensus       132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l  211 (612)
                                                                    +||++|..+|+++++||||   |..+    ++.+
T Consensus       188 ----------------------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~  214 (356)
T 3jvv_A          188 ----------------------------------------------ALRSALREDPDIILVGEMR---DLET----IRLA  214 (356)
T ss_dssp             ----------------------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred             ----------------------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence                                                          9999999999999999999   6555    4445


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       212 ~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      .++++.|.+|++|+|+.+.  .+.+||++.|..|
T Consensus       215 ~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~  246 (356)
T 3jvv_A          215 LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred             HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence            5556789999999999863  4889999999665

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=4.1e-18  Score=183.46  Aligned_cols=163  Identities=13%  Similarity=0.173  Sum_probs=97.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          +++.+++|+|++|      +|+||||||||||+|+|+|...+..+   .|.+.+++.+ 
T Consensus        11 ~l~~~~l~~~y----------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-   70 (418)
T 2qag_C           11 YVGFANLPNQV----------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-   70 (418)
T ss_dssp             ----CCCCCCT----------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------
T ss_pred             cEEEEecceeE----------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-
Confidence            58888888765          5678999999998      99999999999999999998764211   2222222211 


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                         ....+.+++++|++.+++.+||.||+.+.....      .......+.+.++            ..++.+++||++|
T Consensus        71 ---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~I  129 (418)
T 2qag_C           71 ---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRV  129 (418)
T ss_dssp             ---CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-
T ss_pred             ---ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHH
Confidence               112356899999998888899999987754321      0111111222221            1456788899999


Q ss_pred             HHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        180 ALELLSNPS---IIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       180 a~aL~~~p~---illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      ||+++.+|+   ++++|||| .|||+...    +.++++.. +.+||+++|..
T Consensus       130 aRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~  177 (418)
T 2qag_C          130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA  177 (418)
T ss_dssp             CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred             HHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence            999999999   99999999 69998873    44555554 67777777764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.64  E-value=1.1e-18  Score=167.43  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=100.2

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA  131 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~  131 (612)
                      .+++|++++|+||||||||||+++|+|.  +     ..|.|.++|.++......++.++|++|+..  +..||.|++.+.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~   75 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV   75 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence            3679999999999999999999999997  2     368999998764221111344678887654  457889988765


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHHcCCcccc--CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy12625        132 AHLKLGNQYSRKAKESKVDSIADSLSISTCK--NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVK  209 (612)
Q Consensus       132 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~  209 (612)
                      +.........     ..++.+++..++....  +..+..+|+|++||+.++|++..+|+++        +|+.....+.+
T Consensus        76 ~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~  142 (191)
T 1zp6_A           76 AGRYAKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS  142 (191)
T ss_dssp             HHHHHHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred             HHHHhccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence            4321100000     0011111122232222  4456679999999999999999999877        68888888888


Q ss_pred             HHHHHHhCCCEEEEEec
Q psy12625        210 LLRDMAHQGTMIICTLH  226 (612)
Q Consensus       210 ~l~~l~~~g~tvi~~~H  226 (612)
                      .++.+...+..+|.+++
T Consensus       143 ~~~~l~~~~~~~i~t~~  159 (191)
T 1zp6_A          143 QFADLGAFEHHVLPVSG  159 (191)
T ss_dssp             HTTCCGGGGGGEEECTT
T ss_pred             HHhccCcccccEEECCC
Confidence            77666443334444443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.62  E-value=1.3e-19  Score=174.20  Aligned_cols=172  Identities=18%  Similarity=0.103  Sum_probs=114.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLK  135 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~  135 (612)
                      |++++|+||||||||||+++|++.        .+|.+.++|.++..    ....++++|.....+..|+++++.+.+...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~--------~~g~~~i~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   69 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ--------LDNSAYIEGDIINH----MVVGGYRPPWESDELLALTWKNITDLTVNF   69 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH--------SSSEEEEEHHHHHT----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc--------cCCeEEEcccchhh----hhccccccCccchhHHHHHHHHHHHHHHHH
Confidence            789999999999999999999972        35889998865321    123567777665555568888877654321


Q ss_pred             cCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC--ChhhhhHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625        136 LGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL--SGGQKKRLSIAL------ELLSNPSIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       136 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L--SgGerqRv~ia~------aL~~~p~illlDEPtsgLD~~~~~~i  207 (612)
                      .....         ..+++.+. .....+...++  |+|++|++.++.      +++.+|+...+||   +||+..... 
T Consensus        70 ~~~~~---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-  135 (189)
T 2bdt_A           70 LLAQN---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-  135 (189)
T ss_dssp             HHTTC---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred             HhcCC---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence            10000         00111110 00001112234  899999998888      9999999888884   899988888 


Q ss_pred             HHHHHHHHhCCCEEEEEecC-CchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        208 VKLLRDMAHQGTMIICTLHQ-PSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       208 ~~~l~~l~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      .+.++.+.+.+.++|.++|+ ++ ++.+.||+|+  ++|+++..|+++-+
T Consensus       136 ~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          136 VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred             HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence            88888886677899999998 65 5788999999  99999999988644

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.60  E-value=2.3e-17  Score=162.91  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCH----H
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTV----E  125 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv----~  125 (612)
                      .-..++|++++|+||||||||||+|+|+|+.+|.   ...|.|.+++++...  ..++.++|++|++..|+.+++    .
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~~~~~~~~f~   84 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFKEMISRDAFL   84 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCc--ccccCceEEECCHHHHHHHHhcCHHH
Confidence            3467999999999999999999999999998741   368999998876432  235678999998765554443    2


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                      |++.+..                                   .+.|-.+++   +.+++..++++|||     ||+.++.
T Consensus        85 E~~~~~~-----------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~  121 (219)
T 1s96_A           85 EHAEVFG-----------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQ  121 (219)
T ss_dssp             EEEEETT-----------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred             HHHHHHh-----------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence            2221110                                   011111111   23444557999999     9999999


Q ss_pred             HHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhhHHh
Q psy12625        206 NLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVPYLS  261 (612)
Q Consensus       206 ~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~  261 (612)
                      ++.+.+.    ++.+|++++|++. ++.   .|+  +.+|    .++++++...+.
T Consensus       122 ~i~~~l~----~~~tI~i~th~~~-~l~---~Rl--~~rG----~~~~e~i~~rl~  163 (219)
T 1s96_A          122 QIRQKMP----HARSIFILPPSKI-ELD---RRL--RGRG----QDSEEVIAKRMA  163 (219)
T ss_dssp             HHHHHCT----TCEEEEEECSSHH-HHH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred             HHHHHcc----CCEEEEEECCCHH-HHH---HHH--HHcC----CCCHHHHHHHHH
Confidence            9999876    5899999999975 333   353  6777    567776665553

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.59  E-value=2.1e-15  Score=143.13  Aligned_cols=82  Identities=18%  Similarity=0.307  Sum_probs=69.4

Q ss_pred             cCcccCCCChhhhhHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccc
Q psy12625        162 KNTLTKHLSGGQKKRLSIALELLS----NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMAD  237 (612)
Q Consensus       162 ~~~~~~~LSgGerqRv~ia~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D  237 (612)
                      .++.+..||||||||++||++|+.    +|++++|||||+|||+.++..+.+.|++++++ .++|+++|+.  .....||
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad  134 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANAD  134 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCS
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCC
Confidence            345677899999999999999975    46999999999999999999999999998754 5788888885  4578999


Q ss_pred             ceeeec--CCe
Q psy12625        238 YLYVLT--EGY  246 (612)
Q Consensus       238 ~v~~L~--~G~  246 (612)
                      +++.+.  +|.
T Consensus       135 ~i~~v~~~~g~  145 (173)
T 3kta_B          135 KIIGVSMRDGV  145 (173)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEecCCE
Confidence            998664  553

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.58  E-value=6.6e-19  Score=187.23  Aligned_cols=175  Identities=14%  Similarity=0.007  Sum_probs=112.2

Q ss_pred             cccceEEEEeC--CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce----eEEEEC----CEecc-chHhhccceEEEc
Q psy12625         45 ILKDISGVFVS--KELSVILGPSGSGKTKLLDILAGYRRPKKTETNS----GYIEIN----ETRLQ-DHRMLRKESCYIM  113 (612)
Q Consensus        45 iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~----G~I~~~----g~~~~-~~~~~~~~i~yv~  113 (612)
                      +.+.|++++++  |+.++|+||||||||||+|+|+|+++|     .+    |++.++    |.++. ....+ +.+++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-----~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~  230 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-----TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGH  230 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-----EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-----CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHH
Confidence            56789999999  999999999999999999999999886     45    666553    22210 00111 2244444


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-hCCCEEEE
Q psy12625        114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-SNPSIIFL  192 (612)
Q Consensus       114 Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~p~illl  192 (612)
                      |+..++. .|+.||+.+                          +..+..++.+..+|+|++||..+++++. .+|++++|
T Consensus       231 q~~~~~~-~t~~~nl~~--------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllL  283 (365)
T 1lw7_A          231 QRYIDYA-VRHSHKIAF--------------------------IDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTIL  283 (365)
T ss_dssp             HHHHHHH-HHHCSSEEE--------------------------ESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred             HHHHHHH-HhccCCEEE--------------------------EeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence            3321110 111111110                          0011112223346778888888888875 59999999


Q ss_pred             eC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccCh
Q psy12625        193 DE---PT------TGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGL  256 (612)
Q Consensus       193 DE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~  256 (612)
                      ||   |+      .++|+..+..+.+.|+++.+ .|.+|++++|. + ...+++|++..+++  ++..++++++
T Consensus       284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~~~  353 (365)
T 1lw7_A          284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEISEL  353 (365)
T ss_dssp             EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred             CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--HhcccchhHh
Confidence            99   65      58999999999999999865 48899998875 3 45788898888864  4445555554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.58  E-value=2.2e-15  Score=147.35  Aligned_cols=154  Identities=14%  Similarity=0.100  Sum_probs=100.9

Q ss_pred             ccccceE-EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         44 DILKDIS-GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        44 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      +.|+++. +-+++|++++|+||||||||||++.|++  .+     ..+.++++..+                  .    .
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-----~~~v~~i~~~~------------------~----~   57 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-----GKKVAYVDTEG------------------G----F   57 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-----CSEEEEEESSC------------------C----C
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-----CCcEEEEECCC------------------C----C
Confidence            4567766 4799999999999999999999999999  31     12333433321                  0    0


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh--hhHHHHHHHHhhC-CCEEEEeCCCCCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--KKRLSIALELLSN-PSIIFLDEPTTGL  199 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~~~-p~illlDEPtsgL  199 (612)
                      +..+-......  .  ....       +++++.+        .+...|+++  +++++.+++++.+ |+++++||||+++
T Consensus        58 ~~~~~~~~~~~--~--~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l  118 (220)
T 2cvh_A           58 SPERLVQMAET--R--GLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY  118 (220)
T ss_dssp             CHHHHHHHHHT--T--TCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred             CHHHHHHHHHh--c--CCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence            11110000000  0  1111       1122222        233455664  5688888899986 9999999999999


Q ss_pred             CHH--------HHHHHHHHHHHHHh-CCCEEEEEecCCch------------HHHhcccceeeecCC
Q psy12625        200 DYL--------NATNLVKLLRDMAH-QGTMIICTLHQPSA------------SLLNMADYLYVLTEG  245 (612)
Q Consensus       200 D~~--------~~~~i~~~l~~l~~-~g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G  245 (612)
                      |+.        ...++++.|+++++ .|.|||+++|....            .+.+.||.+++|++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            973        33556677888876 48999999998541            467889999999754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.56  E-value=6.9e-16  Score=163.65  Aligned_cols=138  Identities=15%  Similarity=0.061  Sum_probs=104.7

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEc-cCCCCCCCCCH
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM-QDNLLQELLTV  124 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~-Q~~~l~~~lTv  124 (612)
                      ++++|+.+++|++++|+||||||||||+|+|+|+++|     .+|.|.++|..-......++.++|++ |++.+      
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-----~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------  233 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-----DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------  233 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-----TSCEEEEESSSCCCCTTCSSEEEEECC-----------
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-----CceEEEECCccccCccccCCEEEEeecCcccc------
Confidence            4999999999999999999999999999999999986     57999999853111223567789998 54321      


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy12625        125 EESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNA  204 (612)
Q Consensus       125 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~  204 (612)
                                                                 +++++..+|-.|+.++..+|+.+++|||+.       
T Consensus       234 -------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------  263 (361)
T 2gza_A          234 -------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------  263 (361)
T ss_dssp             ------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------
T ss_pred             -------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------
Confidence                                                       013444678888888888999999999986       


Q ss_pred             HHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        205 TNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       205 ~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .++.+.++.+.....|++.++|..+  ....+||+..|.+|.
T Consensus       264 ~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          264 GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN  303 (361)
T ss_dssp             THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence            3456677777655568899999965  478899999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.56  E-value=5.1e-18  Score=170.21  Aligned_cols=147  Identities=18%  Similarity=0.269  Sum_probs=104.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHH---CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHH
Q psy12625         55 SKELSVILGPSGSGKTKLLDILA---GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA  131 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~---g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~  131 (612)
                      ++++++|+||||||||||+++|+   |+..+     ..|+|.++|.+..  ......+++++|+..+++..++.|++...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-----~~G~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~v~~~l~~~   98 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-----SSGHFLRENIKAS--TEVGEMAKQYIEKSLLVPDHVITRLMMSE   98 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-----EHHHHHHHHHHTT--CHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-----cHHHHHHHHHhcC--ChHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999999   98774     5788877765421  12233455667887788888999998764


Q ss_pred             HHhccC-----CCCCHHHHHHHHHHHHH--HcC------------CccccCcccCCCChhhhhHHHHHHHH-hhCCCEEE
Q psy12625        132 AHLKLG-----NQYSRKAKESKVDSIAD--SLS------------ISTCKNTLTKHLSGGQKKRLSIALEL-LSNPSIIF  191 (612)
Q Consensus       132 ~~l~~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~~~~LSgGerqRv~ia~aL-~~~p~ill  191 (612)
                      ......     ...+...  ..++.+.+  .++            ++...++++..|||    |+   +++ +.+|++++
T Consensus        99 l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~ll  169 (246)
T 2bbw_A           99 LENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHG  169 (246)
T ss_dssp             HHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTT
T ss_pred             HHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccc
Confidence            321000     0111111  12223221  233            33445777889999    66   777 99999999


Q ss_pred             Ee----CCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625        192 LD----EPTTGLDYLNATNLVKLLRDMAHQ  217 (612)
Q Consensus       192 lD----EPtsgLD~~~~~~i~~~l~~l~~~  217 (612)
                      +|    |||+|||..+...+.+.++++.++
T Consensus       170 lD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          170 IDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             BCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            99    999999999999999999988765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.54  E-value=2e-15  Score=160.66  Aligned_cols=131  Identities=21%  Similarity=0.347  Sum_probs=99.3

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCc-eeEEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETN-SGYIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~-~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      .+|++++  +++|++++|+||||||||||+++|+|+++|     . +|+|.+.|.++.  ...++.+++|+|..      
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-----~~~g~I~~~e~~~e--~~~~~~~~~v~Q~~------  190 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----TKSYHIITIEDPIE--YVFKHKKSIVNQRE------  190 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-----HSCCEEEEEESSCC--SCCCCSSSEEEEEE------
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-----CCCcEEEEecccHh--hhhccCceEEEeee------
Confidence            3577766  789999999999999999999999999874     3 699977765532  12456788888841      


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                                                       +|++      +..+      +.+|+++|..+|+++++|||+   |+.
T Consensus       191 ---------------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e  222 (372)
T 2ewv_A          191 ---------------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLE  222 (372)
T ss_dssp             ---------------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred             ---------------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence                                             1221      1233      469999999999999999999   776


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        203 NATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       203 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +...   .++. +..|.+|+.|+|+.+  +.+.+||++.|.
T Consensus       223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~  257 (372)
T 2ewv_A          223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF  257 (372)
T ss_dssp             HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred             HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence            6443   3443 356899999999964  578899998774

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=2.6e-16  Score=168.83  Aligned_cols=172  Identities=15%  Similarity=0.151  Sum_probs=112.5

Q ss_pred             cccccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCC
Q psy12625         41 KSKDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLL  118 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l  118 (612)
                      ++.+ |+++|+++++|++  ++|+||||||||||+|+|+|+.-       .|.-.- ..   .....++.++|++|++.+
T Consensus        26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~-~~---~~~~~~~~i~~v~Q~~~l   93 (427)
T 2qag_B           26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPAT-HT---QPGVQLQSNTYDLQESNV   93 (427)
T ss_dssp             C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------C---CSSCEEEEEEEEEEC--C
T ss_pred             CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCC-CC---CccceEeeEEEEeecCcc
Confidence            4556 9999999999999  99999999999999999999842       121110 00   111234579999999988


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHHc-CCcc----ccCccc-----------CCCChhhhhHHHHH
Q psy12625        119 QELLTVEESLTVAAHLKLGNQYS--RKAKESKVDSIADSL-SIST----CKNTLT-----------KHLSGGQKKRLSIA  180 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~~~~~-----------~~LSgGerqRv~ia  180 (612)
                      ++.+||.||+.++..........  .+..++..++.++.. ++..    ..|.++           .+|+-.+   +.|+
T Consensus        94 ~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieil  170 (427)
T 2qag_B           94 RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTM  170 (427)
T ss_dssp             EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHH
T ss_pred             ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHH
Confidence            88899999876543211000000  011234455566655 5432    223332           1455555   7999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD-MAHQGTMIICTLHQ  227 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~  227 (612)
                      ++|..+++++++|||+..|.+.....+.+.+++ +..+|..|+.++.+
T Consensus       171 k~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          171 KKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            999999999999999999999999999999986 77789998888765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.53  E-value=1.7e-18  Score=180.74  Aligned_cols=161  Identities=15%  Similarity=0.142  Sum_probs=106.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCC---CCCceeEEEECCEeccch-----------------HhhccceEEE---
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKK---TETNSGYIEINETRLQDH-----------------RMLRKESCYI---  112 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~---~~~~~G~I~~~g~~~~~~-----------------~~~~~~i~yv---  112 (612)
                      =++++|+|+||||||||||.|.|..+..+   -.+..|+|.++|.++...                 ..+++.++++   
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~   83 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN   83 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence            36899999999999999999999862100   013679999999876432                 1234557776   


Q ss_pred             ccCCCCCCCCCHHHHHHHHH--Hh-ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625        113 MQDNLLQELLTVEESLTVAA--HL-KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI  189 (612)
Q Consensus       113 ~Q~~~l~~~lTv~e~l~~~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i  189 (612)
                      +|++.+++..+|.||..++.  .+ +.-...+......+++.++..+++.+..++.. ++|+|||||+..+++++.+|++
T Consensus        84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl  162 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV  162 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred             HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence            57666666677777664321  00 00000000001111223344455555544444 7999999999999999999998


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      +  |||         .++.+.+++++ .+.+|++++|++.
T Consensus       163 ~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~  190 (318)
T 1nij_A          163 A--GEA---------EKLHERLARIN-ARAPVYTVTHGDI  190 (318)
T ss_dssp             C--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred             C--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence            8  999         77888888875 5889999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.52  E-value=6.3e-15  Score=155.08  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=100.3

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-CCCCCCceeEEEEC-CEeccchHhhccceEEEccCCCCCCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR-PKKTETNSGYIEIN-ETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-p~~~~~~~G~I~~~-g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      -+++++.. .+|++++|+||||||||||+|+|+|..+ |     .+|+|.++ |+...  ...++.+++++|+..++++.
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-----~~G~I~~~~G~g~~--tt~~~~i~~v~q~~~l~dtp  276 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-----LTNDVSNVSGLGQH--TTTAARLYHFPHGGDVIDSP  276 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-----CCC---------------CCCEEEECTTSCEEEECH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-----ccCCccccCCCCcc--ceEEEEEEEECCCCEecCcc
Confidence            45666654 4899999999999999999999999987 6     57999887 65521  23456799999999999888


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                      ||+|+.     +   ...++++..+.+.++++.+|+.+..|..+.++| ||+||++||+++               +++.
T Consensus       277 gv~e~~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~  332 (358)
T 2rcn_A          277 GVREFG-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAET  332 (358)
T ss_dssp             HHHTCC-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred             cHHHhh-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHH
Confidence            988841     1   134455566778899999999999999999999 999999999875               3444


Q ss_pred             HHHHHHHHHHHHHh
Q psy12625        203 NATNLVKLLRDMAH  216 (612)
Q Consensus       203 ~~~~i~~~l~~l~~  216 (612)
                      -.....++++++++
T Consensus       333 R~~~y~~l~~e~~~  346 (358)
T 2rcn_A          333 RFENYHRILESMAQ  346 (358)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            44455566666543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.50  E-value=1e-14  Score=144.74  Aligned_cols=152  Identities=14%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccchH---hhccceEEEccCCCCCCCCCHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQDHR---MLRKESCYIMQDNLLQELLTVE  125 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~~~---~~~~~i~yv~Q~~~l~~~lTv~  125 (612)
                      +-+++|++++|+||||||||||++.|++  ..+|..+....|.+++++.+.....   ...+.+++.+|+        +.
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~   90 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VL   90 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HH
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hh
Confidence            5699999999999999999999999999  4443111113577788776521111   112223332221        11


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH-HHHHHHHh--hCCCEEEEeCCCCCCCHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR-LSIALELL--SNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~--~~p~illlDEPtsgLD~~  202 (612)
                      ++                            +.+       ....+..+... +.-+.+++  .+|+++++|||++.+|+.
T Consensus        91 ~~----------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A           91 DN----------------------------VAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             HT----------------------------EEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             hC----------------------------eEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence            11                            100       01123332221 22222333  589999999999999985


Q ss_pred             -------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchH------------------HHhcccceeeecCC
Q psy12625        203 -------N-----ATNLVKLLRDMAH-QGTMIICTLHQPSAS------------------LLNMADYLYVLTEG  245 (612)
Q Consensus       203 -------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~~~------------------i~~~~D~v~~L~~G  245 (612)
                             .     ..++++.|+++++ .|.|||+++|.....                  +.+.||.+++|++|
T Consensus       136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                   3     3456677777765 599999999965321                  12278999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.47  E-value=5e-16  Score=147.28  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccc-----hHhhc-cceE----EEccCCCCCCCCCHHH
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQD-----HRMLR-KESC----YIMQDNLLQELLTVEE  126 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~-----~~~~~-~~i~----yv~Q~~~l~~~lTv~e  126 (612)
                      ++++|+|+||||||||+++|+|+++|.  ....|.|.++|.++.+     ...+| +.++    +++|+..++-    ++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~--g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER--GLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT--TCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc--CCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec
Confidence            589999999999999999999998752  1137999999987432     23455 3566    8888876551    00


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHH-cCCccccCcccC-CCChhhhhHHHHHHHHhhCCCEE-------EEeCCCC
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADS-LSISTCKNTLTK-HLSGGQKKRLSIALELLSNPSII-------FLDEPTT  197 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~~~-~LSgGerqRv~ia~aL~~~p~il-------llDEPts  197 (612)
                                +   . .+....++++++. +.   -.|+.++ +||||||||++|||+++.+|++.       .=|.|..
T Consensus        77 ----------~---~-~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~  139 (171)
T 2f1r_A           77 ----------V---S-EEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD  139 (171)
T ss_dssp             ----------C---C-HHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred             ----------C---C-hhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence                      0   0 1111134556655 42   1233332 59999999999999999999873       2245432


Q ss_pred             C---CCHHHHHHHHHHHHHHHhCCC
Q psy12625        198 G---LDYLNATNLVKLLRDMAHQGT  219 (612)
Q Consensus       198 g---LD~~~~~~i~~~l~~l~~~g~  219 (612)
                      +   +|......+.+.+.+...+|.
T Consensus       140 ~~~~f~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          140 GHKWFRRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             SSCEECTTCHHHHHHHHHHHHTC--
T ss_pred             cCcccCcccHHHHHHHHHHHHhccC
Confidence            2   344556777788766666553

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.47  E-value=1e-15  Score=143.18  Aligned_cols=81  Identities=16%  Similarity=0.022  Sum_probs=67.7

Q ss_pred             ccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCC
Q psy12625         40 IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        40 ~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~  119 (612)
                      ++++.+++++|+++++|++++|+||||||||||+|+|+|++ |     .+|+|.++|.++.+....+   .+++|+..++
T Consensus        17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----~~G~V~~~g~~i~~~~~~~---~~~~q~~~l~   87 (158)
T 1htw_A           17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-----HQGNVKSPTYTLVEEYNIA---GKMIYHFDLY   87 (158)
T ss_dssp             HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-----CCSCCCCCTTTCEEEEEET---TEEEEEEECT
T ss_pred             HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-----CCCeEEECCEeeeeeccCC---Ccceeccccc
Confidence            35678999999999999999999999999999999999988 6     4799999998764221112   2899998888


Q ss_pred             CCCCHHHHHHH
Q psy12625        120 ELLTVEESLTV  130 (612)
Q Consensus       120 ~~lTv~e~l~~  130 (612)
                       .+||.|++.+
T Consensus        88 -~ltv~e~l~~   97 (158)
T 1htw_A           88 -RLADPEELEF   97 (158)
T ss_dssp             -TCSCTTHHHH
T ss_pred             -cCCcHHHHHH
Confidence             8999999854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.47  E-value=1.8e-15  Score=164.32  Aligned_cols=182  Identities=15%  Similarity=0.105  Sum_probs=119.7

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hh--hccceEEEccCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RM--LRKESCYIMQDNL  117 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~--~~~~i~yv~Q~~~  117 (612)
                      -+++|+++++|++++|+||||||||||+++|+|++++     .+|+|.++|.+....      ..  .++.++|++|+..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-----~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~  357 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG  357 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-----cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence            4689999999999999999999999999999999875     469999987764321      12  2567999999988


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh-hCC-CEEEEeCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL-SNP-SIIFLDEP  195 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~p-~illlDEP  195 (612)
                      +++.+||++++.++..-..  .        .  -+++..|+.+.......+|    +|++.+++++. ..| .++|..+|
T Consensus       358 ~~p~~tV~e~l~~a~~~~~--D--------v--VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDa  421 (503)
T 2yhs_A          358 ADSASVIFDAIQAAKARNI--D--------V--LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDA  421 (503)
T ss_dssp             CCHHHHHHHHHHHHHHTTC--S--------E--EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred             cCHHHHHHHHHHHHHhcCC--C--------E--EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecC
Confidence            8888999999988643110  0        0  0122223222211112223    47888888764 456 45666668


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeec--CCeEEEecCccCh
Q psy12625        196 TTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLT--EGYCTYQGTVPGL  256 (612)
Q Consensus       196 tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~~~  256 (612)
                      |+|.|..      +.++.+.+ -+.|.++.||-..  .....+.+-++.  +..+.|.|.-+.+
T Consensus       422 ttGq~al------~~ak~f~~~~~itgvIlTKLD~--takgG~~lsi~~~~~~PI~fig~Ge~v  477 (503)
T 2yhs_A          422 STGQNAV------SQAKLFHEAVGLTGITLTKLDG--TAKGGVIFSVADQFGIPIRYIGVGERI  477 (503)
T ss_dssp             GGTHHHH------HHHHHHHHHTCCSEEEEECGGG--CSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred             cccHHHH------HHHHHHHhhcCCCEEEEEcCCC--cccccHHHHHHHHHCCCEEEEecCCCh
Confidence            8886554      33455544 4788888888422  234444444443  3467777766554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.46  E-value=1e-16  Score=168.52  Aligned_cols=166  Identities=13%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchH------hhccceEEEcc
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHR------MLRKESCYIMQ  114 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~------~~~~~i~yv~Q  114 (612)
                      +.+.+|+++|+++++|++++|+||||||||||+|+|+|+.+|     .+|+|.+.|.++....      ..++.+++++|
T Consensus        40 ~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-----~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q  114 (337)
T 2qm8_A           40 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-----AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAI  114 (337)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGG
T ss_pred             ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-----CCCEEEEEEEcCcccccccchHHHhhhheeecc
Confidence            456799999999999999999999999999999999999875     4799999998763321      24567999999


Q ss_pred             CCCCCCCC------------CHHHHHHHHH-----------------------Hhc-----cCCCCCHHH--HHHHHHHH
Q psy12625        115 DNLLQELL------------TVEESLTVAA-----------------------HLK-----LGNQYSRKA--KESKVDSI  152 (612)
Q Consensus       115 ~~~l~~~l------------Tv~e~l~~~~-----------------------~l~-----~~~~~~~~~--~~~~v~~~  152 (612)
                      ++.+++..            +++|.+....                       ...     .........  .++.+.+.
T Consensus       115 ~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~  194 (337)
T 2qm8_A          115 DRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL  194 (337)
T ss_dssp             CTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHH
T ss_pred             CcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhcc
Confidence            98887542            2333321110                       000     000000000  00011122


Q ss_pred             HHHcCCccccCc-ccCCCChhhhhHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy12625        153 ADSLSISTCKNT-LTKHLSGGQKKRLSIALELLS------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAH  216 (612)
Q Consensus       153 l~~lgL~~~~~~-~~~~LSgGerqRv~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~  216 (612)
                      ...+.+ +..|. ....+|+|++|++..+++++.      +|++++    ||++|.....++.+.|.++.+
T Consensus       195 ~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          195 ADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            222333 23342 234689999999999999987      688887    999999999999999988754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.45  E-value=1.1e-14  Score=151.94  Aligned_cols=144  Identities=15%  Similarity=0.074  Sum_probs=103.7

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhhc--cceEEEccCCCCCCCCCHH
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLR--KESCYIMQDNLLQELLTVE  125 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~--~~i~yv~Q~~~l~~~lTv~  125 (612)
                      ++|++++|+||||||||||++.|+|+++|     .+|+|.++|.++...      ..++  ..+.+++|+..+.|.+||+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-----~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~  201 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-----HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY  201 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence            68999999999999999999999999875     579999999886432      1122  3466999999999999999


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                      ||+.++.....  ..          .+++..|+.+..+....+||+       +++++..++++++||.+|.       .
T Consensus       202 e~l~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-------~  255 (328)
T 3e70_C          202 DAIQHAKARGI--DV----------VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-------N  255 (328)
T ss_dssp             HHHHHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-------T
T ss_pred             HHHHHHHhccc--hh----------hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-------H
Confidence            99987642110  00          012334554444444444543       8899988888888885554       3


Q ss_pred             HHHHHHHHHHh-CCCEEEEEecCC
Q psy12625        206 NLVKLLRDMAH-QGTMIICTLHQP  228 (612)
Q Consensus       206 ~i~~~l~~l~~-~g~tvi~~~H~~  228 (612)
                      ++++.++.+.+ .+.|+|++||..
T Consensus       256 ~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          256 AIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCcC
Confidence            56666677764 588999999964

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.45  E-value=4e-15  Score=141.60  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=42.9

Q ss_pred             hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q psy12625        184 LSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSAS  231 (612)
Q Consensus       184 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~  231 (612)
                      +.+|++|++|||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            45999999999996 9999999999999999888899999999998643

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.43  E-value=2.5e-13  Score=144.54  Aligned_cols=78  Identities=29%  Similarity=0.409  Sum_probs=68.5

Q ss_pred             cccCCCChhhhhHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625        164 TLTKHLSGGQKKRL------SIALELLSN-PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMA  236 (612)
Q Consensus       164 ~~~~~LSgGerqRv------~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~  236 (612)
                      .++..||||||||+      ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||++.  +...+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence            45678999999988      567889999 999999999999999999999999998753 468999999974  57899


Q ss_pred             cceeeecC
Q psy12625        237 DYLYVLTE  244 (612)
Q Consensus       237 D~v~~L~~  244 (612)
                      |++++|++
T Consensus       353 d~~~~l~k  360 (371)
T 3auy_A          353 DVIINVKK  360 (371)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999973

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=7.5e-15  Score=151.92  Aligned_cols=123  Identities=11%  Similarity=0.131  Sum_probs=86.6

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchH-hhc-cceEEEccCCCCC-----CCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHR-MLR-KESCYIMQDNLLQ-----ELL  122 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~-~~~-~~i~yv~Q~~~l~-----~~l  122 (612)
                      +.+|++++|+||||||||||+|+|+ +.+|     .+|+|.+   +|+++.... ..+ +.+||++|++.+.     +.+
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-----~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l  235 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEEL-----RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV  235 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCC-----CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhC-----cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence            3469999999999999999999999 8775     5799999   888754322 222 3689999998653     678


Q ss_pred             CHHHHH--HHHH----HhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChhhhhHHHHHHH
Q psy12625        123 TVEESL--TVAA----HLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALE  182 (612)
Q Consensus       123 Tv~e~l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~a  182 (612)
                      |+ |++  .|+.    .++.....+..+...+++++++.+||.+ ..+++++.|||.++|++.|||+
T Consensus       236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~  301 (302)
T 2yv5_A          236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCRE  301 (302)
T ss_dssp             CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred             CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99 887  4431    0112111122233467899999999986 7888999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.42  E-value=7.4e-14  Score=129.30  Aligned_cols=96  Identities=14%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee--EEEECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG--YIEINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G--~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      .+|+++     +|+.++|+||||+|||||+++|++...+      +|  .+.+++.++                  ... 
T Consensus        29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~~------------------~~~-   78 (149)
T 2kjq_A           29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAASM------------------PLT-   78 (149)
T ss_dssp             HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTTS------------------CCC-
T ss_pred             HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHHh------------------hHH-
Confidence            456676     8999999999999999999999998753      23  333333221                  000 


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                                                                                  +++.+|++|++|||++ +|.
T Consensus        79 ------------------------------------------------------------~~~~~~~lLilDE~~~-~~~   97 (149)
T 2kjq_A           79 ------------------------------------------------------------DAAFEAEYLAVDQVEK-LGN   97 (149)
T ss_dssp             ------------------------------------------------------------GGGGGCSEEEEESTTC-CCS
T ss_pred             ------------------------------------------------------------HHHhCCCEEEEeCccc-cCh
Confidence                                                                        2356899999999998 665


Q ss_pred             HHHHHHHHHHHHHHhCCCE-EEEEecCCch
Q psy12625        202 LNATNLVKLLRDMAHQGTM-IICTLHQPSA  230 (612)
Q Consensus       202 ~~~~~i~~~l~~l~~~g~t-vi~~~H~~~~  230 (612)
                      ..+..+.+++.++.++|++ +|+++|.+..
T Consensus        98 ~~~~~l~~li~~~~~~g~~~iiits~~~p~  127 (149)
T 2kjq_A           98 EEQALLFSIFNRFRNSGKGFLLLGSEYTPQ  127 (149)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence            5588999999999888887 8889886543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.40  E-value=2.7e-14  Score=146.76  Aligned_cols=130  Identities=14%  Similarity=0.076  Sum_probs=88.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH  133 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~  133 (612)
                      +++.+++|.||||||||||.+.|++++.+      .|            .. ++.+.+|+||+.+++ .++++|+.+...
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~------~g------------~~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~   88 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME------KY------------GG-EKSIGYASIDDFYLT-HEDQLKLNEQFK   88 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH------HH------------GG-GSCEEEEEGGGGBCC-HHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh------cC------------CC-CceEEEeccccccCC-hHHHHHHhcccc
Confidence            57899999999999999999999998763      12            01 345667799998886 488888877521


Q ss_pred             ---hccCCCCCHHHHHHHHHHHHHHcCCc------c--ccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        134 ---LKLGNQYSRKAKESKVDSIADSLSIS------T--CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       134 ---l~~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                         +......+.....+...+.++.+.-.      +  ........+||||+||+++|++...+|+|+|+||||+++|+.
T Consensus        89 ~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           89 NNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             TCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             ccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence               00000112222234556667766432      1  123344679999999999983333399999999999999985


Q ss_pred             H
Q psy12625        203 N  203 (612)
Q Consensus       203 ~  203 (612)
                      .
T Consensus       169 ~  169 (290)
T 1odf_A          169 L  169 (290)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.38  E-value=1.3e-15  Score=164.11  Aligned_cols=137  Identities=15%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------HhhccceEEEc---
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RMLRKESCYIM---  113 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~~~~i~yv~---  113 (612)
                      +.+|+++ + .++|++++|+|||||||||||++|+|+++|     .+|+|.+.|.++...      ...++.+++.+   
T Consensus       156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-----~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~  228 (418)
T 1p9r_A          156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-----SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG  228 (418)
T ss_dssp             HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-----TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred             HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-----CCCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence            4467777 4 389999999999999999999999999875     479999988775211      12334556655   


Q ss_pred             ------cCCCC--CCC----CCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        114 ------QDNLL--QEL----LTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       114 ------Q~~~l--~~~----lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                            |++..  ++.    .|+++++.++..-... .........+.+ +.+..+|+.+..  .+.+|||||+||  ||
T Consensus       229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--La  303 (418)
T 1p9r_A          229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LV  303 (418)
T ss_dssp             HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EE
T ss_pred             HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hh
Confidence                  88765  343    5888888775421100 000111112223 346778987653  677899999999  99


Q ss_pred             HHHhhCCCEEE
Q psy12625        181 LELLSNPSIIF  191 (612)
Q Consensus       181 ~aL~~~p~ill  191 (612)
                      ++|+.+|++..
T Consensus       304 raL~~~p~~~~  314 (418)
T 1p9r_A          304 RTLCPDCKEPY  314 (418)
T ss_dssp             EEECTTTCEEE
T ss_pred             hhhcCCCCccC
Confidence            99999999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.36  E-value=1e-13  Score=149.00  Aligned_cols=172  Identities=17%  Similarity=0.172  Sum_probs=102.5

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHH
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVE  125 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~  125 (612)
                      -++++++++.|+.++|+|+|||||||||++|+|..+           .+.+.+..   .+...+++|.+++.  ..+++.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ft---Tl~p~~G~V~~~~~--~~~~l~  210 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----------KIAPYPFT---TLSPNLGVVEVSEE--ERFTLA  210 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----------EECCCTTC---SSCCEEEEEECSSS--CEEEEE
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----------cccCcccc---eecceeeEEEecCc--ceEEEE
Confidence            379999999999999999999999999999999742           11222211   11223444444320  001111


Q ss_pred             HHHHHHHHhccCCCCCHHH--HHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625        126 ESLTVAAHLKLGNQYSRKA--KESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN  203 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~  203 (612)
                      |+.-+.........+....  ..++++.++..++++   +..+.+||+||+||+++|++|+.+|.++++    +++|...
T Consensus       211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~  283 (416)
T 1udx_A          211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE  283 (416)
T ss_dssp             ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred             eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence            1000000000000111110  011233344445554   566778999999999999999999999999    9999987


Q ss_pred             HHHHHHHHHHH-HhCCCEEEEEecCCchHHHhcccceee
Q psy12625        204 ATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       204 ~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      + ..++.+++. .+.+.+++.++......+.++++.+.-
T Consensus       284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~  321 (416)
T 1udx_A          284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA  321 (416)
T ss_dssp             H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence            7 455555544 445766665554334457777776654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.36  E-value=5.3e-13  Score=140.26  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             EEEECCCCCcHHHHHHHHHC-CCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625         59 SVILGPSGSGKTKLLDILAG-YRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG  137 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g-~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~  137 (612)
                      +.|.||||+|||||+++|++ +..|     ..|++.++|.+.......+..+++++|.+.+.-..+  +       ..  
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~-----~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~--  102 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGP-----GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG--  102 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCT-----TCCC------------------CCEECSSEEEECCC--------------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCC-----CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC--
Confidence            89999999999999999999 6654     468999998775433233567888988765321111  0       00  


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625        138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ  217 (612)
Q Consensus       138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~  217 (612)
                       .......++.++++.+..++.+.    . .+||           +..+|+++++|||++ ||+.++..+.+.+.+.. .
T Consensus       103 -~~~~~~~~~~i~~~~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~  163 (354)
T 1sxj_E          103 -NNDRIVIQELLKEVAQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K  163 (354)
T ss_dssp             --CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred             -CcchHHHHHHHHHHHHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence             00111122223333222233221    1 5666           788999999999999 99999999999998864 4


Q ss_pred             CCEEEEEecCCch
Q psy12625        218 GTMIICTLHQPSA  230 (612)
Q Consensus       218 g~tvi~~~H~~~~  230 (612)
                      ++++|+++|++..
T Consensus       164 ~~~~Il~t~~~~~  176 (354)
T 1sxj_E          164 NIRLIMVCDSMSP  176 (354)
T ss_dssp             TEEEEEEESCSCS
T ss_pred             CCEEEEEeCCHHH
Confidence            6899999999763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.34  E-value=3e-16  Score=173.28  Aligned_cols=175  Identities=15%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-----
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-----  117 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-----  117 (612)
                      ..+++++++.+++|+.++|+|||||||||||++|+|+++|     .+|.|+++|.+-.... -...++++.|...     
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-----~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~  320 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-----DAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEI  320 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-----TCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCB
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-----CCCEEEEcCcccccCC-CCCeEEEEeecccccCCc
Confidence            4578999999999999999999999999999999999986     5799999886411111 1234555555433     


Q ss_pred             -----------------CCCCCCHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHcC-----Ccc----ccC---cccC
Q psy12625        118 -----------------LQELLTVEESLTVAAHLKLGNQ-YSRKAKESKVDSIADSLS-----IST----CKN---TLTK  167 (612)
Q Consensus       118 -----------------l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~~l~~lg-----L~~----~~~---~~~~  167 (612)
                                       ++..++..|++.+......+.. ++. .....+.++++++.     +..    ..+   ....
T Consensus       321 ~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~  399 (511)
T 2oap_1          321 DMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTM  399 (511)
T ss_dssp             CHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred             CHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence                             2234555555443322221100 000 00001223333332     221    112   2234


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhccc
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIIC--TLHQPSASLLNMAD  237 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~~~i~~~~D  237 (612)
                      .+|||||||.+++.          + | |+|||+.+...+++.+.++.+++.|+++  ++|+.. ++...++
T Consensus       400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g  458 (511)
T 2oap_1          400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG  458 (511)
T ss_dssp             EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred             EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence            58999999987652          1 7 9999998887777777777667888875  889865 4555553

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.33  E-value=1.3e-12  Score=139.99  Aligned_cols=152  Identities=11%  Similarity=0.091  Sum_probs=91.4

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHH--HHCCCCCCCCCCceeEEEECCEeccchH---hhccceEEEccCCCCCCCCCHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDI--LAGYRRPKKTETNSGYIEINETRLQDHR---MLRKESCYIMQDNLLQELLTVE  125 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~--l~g~~~p~~~~~~~G~I~~~g~~~~~~~---~~~~~i~yv~Q~~~l~~~lTv~  125 (612)
                      +-+++|++++|+||||||||||++.  +++..++..+....+.++++++......   .+.+.+++.+|        ++.
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl  244 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL  244 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence            5799999999999999999999994  4566654221123457777776521111   11223333222        222


Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh--hhHHHHHHHHh--hCCCEEEEeCCCCCCCH
Q psy12625        126 ESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ--KKRLSIALELL--SNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       126 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~--~~p~illlDEPtsgLD~  201 (612)
                      +|+.+                                    .....++  .+.+.-+.+++  .+|+++++||||+.+|+
T Consensus       245 eni~~------------------------------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~  288 (400)
T 3lda_A          245 NNVAY------------------------------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT  288 (400)
T ss_dssp             HTEEE------------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred             hcEEE------------------------------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence            22211                                    0011111  22222222222  47999999999999997


Q ss_pred             HHH------------HHHHHHHHHHHh-CCCEEEEEecCCc------------------hHHHhcccceeeecCCe
Q psy12625        202 LNA------------TNLVKLLRDMAH-QGTMIICTLHQPS------------------ASLLNMADYLYVLTEGY  246 (612)
Q Consensus       202 ~~~------------~~i~~~l~~l~~-~g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G~  246 (612)
                      ...            .++++.|+++++ .|.|||+++|...                  ..+.+.+|.++.|++++
T Consensus       289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            533            678888999987 5999999999821                  12456788888887653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.28  E-value=6.1e-15  Score=157.24  Aligned_cols=175  Identities=13%  Similarity=0.126  Sum_probs=122.4

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCC----CC---CCCCceeEEEECCEeccchHh-h--ccc---eEEEccCCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRR----PK---KTETNSGYIEINETRLQDHRM-L--RKE---SCYIMQDNLL  118 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~----p~---~~~~~~G~I~~~g~~~~~~~~-~--~~~---i~yv~Q~~~l  118 (612)
                      .+++|..++|+|+||||||||+|+|+|...    +.   ...+.+|.+.++|..+..... +  ++.   ..++.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999321    10   112478999999854321111 1  222   3467788887


Q ss_pred             CCCCCHHHHH--HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCC--CEEEEeC
Q psy12625        119 QELLTVEESL--TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNP--SIIFLDE  194 (612)
Q Consensus       119 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p--~illlDE  194 (612)
                      .+..+..|++  .|...++.            ++.++..++..  .+..+..+||+.            +|  ++.++||
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde  149 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD  149 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence            7777766655  34333321            11122222221  245555677764            89  9999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhccccee-eecCC-eEEEecCccC
Q psy12625        195 PTTGLDYLNATNLVKLLRDM-AHQGTMIICTLHQPSASLLNMADYLY-VLTEG-YCTYQGTVPG  255 (612)
Q Consensus       195 PtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~  255 (612)
                      |+.++|+....+.++.++++ ++.|.|++  +|+.. .+.++||++. +|.+| ++++.|+.++
T Consensus       150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~  210 (392)
T 1ni3_A          150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN  210 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence            99999999999999999998 76777764  89865 6889999999 99999 8888776543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.27  E-value=4e-14  Score=138.17  Aligned_cols=145  Identities=12%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHH
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAA  132 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~  132 (612)
                      .++|++++|+||||||||||+++|+|+++|.  +...|.|.++|..+... .. ...+....                  
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~~~~~~-~~-~~~~~~~~------------------   76 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGFHLDNR-LL-EPRGLLPR------------------   76 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGGBCCHH-HH-GGGTCGGG------------------
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCCcCCHH-HH-HHhccccc------------------
Confidence            5799999999999999999999999998742  12356666555442111 00 00000000                  


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHHcC----CccccCcccCCCChhhhhHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy12625        133 HLKLGNQYSRKAKESKVDSIADSLS----ISTCKNTLTKHLSGGQKKRLSIA-LELLSNPSIIFLDEPTTGLDYLNATNL  207 (612)
Q Consensus       133 ~l~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGerqRv~ia-~aL~~~p~illlDEPtsgLD~~~~~~i  207 (612)
                       ...+....    .....+.+..+.    +..........+|+||+||++++ ++++.++.++++|||..          
T Consensus        77 -~~~~~~~~----~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~----------  141 (208)
T 3c8u_A           77 -KGAPETFD----FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW----------  141 (208)
T ss_dssp             -TTSGGGBC----HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred             -CCCCchhh----HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence             00000111    111222222221    11111122235799999999998 88888888888898841          


Q ss_pred             HHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625        208 VKLLRDMAHQGTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       208 ~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~  238 (612)
                          .++.+.--.++++.++....+.+...|
T Consensus       142 ----~~l~~~~d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          142 ----RDLTAIWDVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             ----GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred             ----HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence                111222235677777655445666666

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.27  E-value=2.4e-14  Score=150.14  Aligned_cols=171  Identities=19%  Similarity=0.239  Sum_probs=111.0

Q ss_pred             cccccccceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch-Hhh-ccceEE
Q psy12625         41 KSKDILKDISGVFVSK-------ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH-RML-RKESCY  111 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~-~~~i~y  111 (612)
                      +.+.+++++++.+++|       +.++|.||||+|||||+++|+|..... ....+|.+..++.++... ... ++.+.+
T Consensus        29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~~~l~~~~~~~~~~~v~~  107 (334)
T 1in4_A           29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLF  107 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSHHHHHHHHHHCCTTCEEE
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCHHHHHHHHHHccCCCEEE
Confidence            5567899999999887       899999999999999999999986310 012456665555443211 112 457999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625        112 IMQDNLLQELLTVEESLTVAAHLKLGNQ--YSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI  189 (612)
Q Consensus       112 v~Q~~~l~~~lTv~e~l~~~~~l~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i  189 (612)
                      ++|.+.+.+  ++.|++....... ...  .......+.++..++.+++.. +++.++.||+|+|||+.++         
T Consensus       108 iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~---------  174 (334)
T 1in4_A          108 IDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII---------  174 (334)
T ss_dssp             EETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE---------
T ss_pred             EcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce---------
Confidence            999887765  7888885433221 100  001122344566667777766 7788899999999998655         


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccc
Q psy12625        190 IFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       190 lllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~  238 (612)
                             .+||+.+..++.++|++.++ .+     +.|++. .+..++++
T Consensus       175 -------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~  211 (334)
T 1in4_A          175 -------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR  211 (334)
T ss_dssp             -------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred             -------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence                   78888899999999999876 34     246643 34445543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.26  E-value=2.5e-15  Score=153.30  Aligned_cols=131  Identities=16%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCC-C
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDN-L  117 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~-~  117 (612)
                      +...+++++++.+++|  ++|.||||||||||+++|+|...+       |.|.++|.++...  ....+.+++++|+. .
T Consensus        31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-------~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~  101 (274)
T 2x8a_A           31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-------NFISVKGPELLNMYVGESERAVRQVFQRAKN  101 (274)
T ss_dssp             HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-------EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-------CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh
Confidence            4566899999999999  999999999999999999998763       7899999775332  23345677777764 4


Q ss_pred             CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        118 LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                      ..|.+++.|++......+       ..  ...+      .+....++...+|||||+||+.|++++..+|++|  |||+.
T Consensus       102 ~~p~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~  164 (274)
T 2x8a_A          102 SAPCVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL  164 (274)
T ss_dssp             TCSEEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred             cCCCeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence            455556666554321000       00  0000      1234456667789999999999999999999986  88864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.21  E-value=2.1e-15  Score=146.32  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCC--------CCCceeEEEECCEecc--chHhhccceEEEccCCCCCCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKK--------TETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~--------~~~~~G~I~~~g~~~~--~~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      ++|++++|+||||||||||+++|+|+.+...        ..+..|+  ++|.++.  +...+++.+   .|+..++ ..+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~   75 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE   75 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence            5899999999999999999999999764100        0012344  3554332  122333322   2332221 122


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCC-ChhhhhHHHHHH-HHhhCCCEEEEeCCCCCCCH
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHL-SGGQKKRLSIAL-ELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L-SgGerqRv~ia~-aL~~~p~illlDEPtsgLD~  201 (612)
                      +.+|+ +        ..++    +.+++.++.-. ....+..+.++ .-.++ ++ .++ +++.+|++++|||+|+++|.
T Consensus        76 ~~~n~-~--------g~~~----~~i~~~~~~~~-~~~~~~~~~g~~~~~~~-~~-~~~~~~l~~p~~~ilde~~~~~d~  139 (198)
T 1lvg_A           76 FSGNL-Y--------GTSK----EAVRAVQAMNR-ICVLDVDLQGVRSIKKT-DL-CPIYIFVQPPSLDVLEQRLRLRNT  139 (198)
T ss_dssp             ETTEE-E--------EEEH----HHHHHHHHTTC-EEEEECCHHHHHHHTTS-SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred             ecCcc-C--------CCCH----HHHHHHHHcCC-cEEEECCHHHHHHHHhc-CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence            22221 1        1111    22333333210 00001000000 00011 22 455 67888889999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        202 LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       202 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      .+...+.+.|.+..++    +...|.+     ..+|+++++++
T Consensus       140 ~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~  173 (198)
T 1lvg_A          140 ETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD  173 (198)
T ss_dssp             SCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence            9999999999887653    1234521     56899888764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.21  E-value=9.2e-13  Score=136.01  Aligned_cols=120  Identities=14%  Similarity=0.118  Sum_probs=71.8

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchHh-hccceEEEccCCCCCC----CC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHRM-LRKESCYIMQDNLLQE----LL  122 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~~-~~~~i~yv~Q~~~l~~----~l  122 (612)
                      +++.+|++++|+||||+|||||+|+|+|..+|     .+|+|.+   +|+.+..... ++..++|++|.+.+.+    .+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-----~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l  242 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-----RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI  242 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-----cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence            34568999999999999999999999999875     5899998   7876433222 2223899999987765    68


Q ss_pred             CHHHHHH--HHHH------hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625        123 TVEESLT--VAAH------LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus       123 Tv~e~l~--~~~~------l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      |+ |++.  |...      ++........+....++++++.++|.+...+....++.|++||
T Consensus       243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            99 8883  3311      1211111122334568999999999876655666777787763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.20  E-value=4.3e-13  Score=138.60  Aligned_cols=108  Identities=13%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE---CCEeccchHh-hc-cceEEEccCCC---------
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI---NETRLQDHRM-LR-KESCYIMQDNL---------  117 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~---~g~~~~~~~~-~~-~~i~yv~Q~~~---------  117 (612)
                      ++.+|++++|+||||||||||||+|+|+.+|     .+|+|.+   +|+++..... .+ +.+|||+|++.         
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-----~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~  239 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDI  239 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-----C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSS
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccc-----cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcC
Confidence            3457999999999999999999999999886     5899999   8887543221 22 36899999974         


Q ss_pred             -------CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-cccCcccCCCCh
Q psy12625        118 -------LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-TCKNTLTKHLSG  171 (612)
Q Consensus       118 -------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg  171 (612)
                             ++|.+|+ ||+.|.. ..     ...+...+++++++.+||. +..++++..||+
T Consensus       240 ~~~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          240 EPEELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             CHHHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                   5788898 8887642 11     1123345789999999995 778888888886

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.12  E-value=1.6e-12  Score=134.78  Aligned_cols=139  Identities=12%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVF-------------------VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .|+++||++.|            .++++++|+.+                   ++|++++|+||||||||||+++|+|++
T Consensus        37 ~i~~~~v~~~y------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           37 DLSLEEVAEIY------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             TCCHHHHHHTH------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccchHhHHHHH------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46667776654            35889999887                   899999999999999999999999987


Q ss_pred             C--CCCCCCceeEEEE---CCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q psy12625         81 R--PKKTETNSGYIEI---NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS  155 (612)
Q Consensus        81 ~--p~~~~~~~G~I~~---~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~  155 (612)
                      .  |     .+|+|.+   +|... . ...++.++++ |+..+++.+|+.+++.+...++.+..                
T Consensus       105 ~~~~-----~~G~i~vi~~d~~~~-~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~----------------  160 (308)
T 1sq5_A          105 SRWP-----EHRRVELITTDGFLH-P-NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP----------------  160 (308)
T ss_dssp             TTST-----TCCCEEEEEGGGGBC-C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS----------------
T ss_pred             hhCC-----CCCeEEEEecCCccC-c-HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC----------------
Confidence            6  4     5799999   88763 2 2234567888 87778888999999988765542110                


Q ss_pred             cCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       156 lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                       .+    ..+.-+.+.+  +|+..+.+.+.+|+++|+|.|....|.
T Consensus       161 -~i----~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          161 -NV----TAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             -CE----EECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             -ce----eccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence             00    1111112222  333322344567899999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.07  E-value=7e-11  Score=122.08  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625         49 ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESL  128 (612)
Q Consensus        49 vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l  128 (612)
                      +++..++|++++|+|||||||||+++.|++...+     ..|+|.+.+.+.....                    ..|  
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-----~g~kV~lv~~D~~r~~--------------------a~e--  149 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-----EGKSVVLAAADTFRAA--------------------AIE--  149 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECTTCHH--------------------HHH--
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-----cCCEEEEEccccccHH--------------------HHH--
Confidence            4555678999999999999999999999998764     3467777665521100                    001  


Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy12625        129 TVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL---SIALELLSNPSIIFLDEPTTGLDYLNAT  205 (612)
Q Consensus       129 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv---~ia~aL~~~p~illlDEPtsgLD~~~~~  205 (612)
                                         ....+.+.+|+..     +...|||+.+++   ++++++..+|+++++|||..   .....
T Consensus       150 -------------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~  202 (306)
T 1vma_A          150 -------------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK  202 (306)
T ss_dssp             -------------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred             -------------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence                               1233445566653     345789999999   99999999999999999974   34455


Q ss_pred             HHHHHHHHHH
Q psy12625        206 NLVKLLRDMA  215 (612)
Q Consensus       206 ~i~~~l~~l~  215 (612)
                      .+++.|+++.
T Consensus       203 ~l~~eL~~l~  212 (306)
T 1vma_A          203 NLMEELRKVH  212 (306)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.07  E-value=9.5e-12  Score=123.41  Aligned_cols=173  Identities=12%  Similarity=0.088  Sum_probs=90.8

Q ss_pred             cccccce-EEEEeCCeEEEEECCCCCcHHHHHHHH-HCCCCCCCCCCceeEEEECCEeccch-HhhccceEEEccCCCCC
Q psy12625         43 KDILKDI-SGVFVSKELSVILGPSGSGKTKLLDIL-AGYRRPKKTETNSGYIEINETRLQDH-RMLRKESCYIMQDNLLQ  119 (612)
Q Consensus        43 ~~iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l-~g~~~p~~~~~~~G~I~~~g~~~~~~-~~~~~~i~yv~Q~~~l~  119 (612)
                      .+.|+++ .+-+++|++++|.||||||||||+..+ .+..+.     ..+.+++++...... ....+.+++.+|+....
T Consensus         9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~   83 (247)
T 2dr3_A            9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEK   83 (247)
T ss_dssp             CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHH
T ss_pred             chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhC
Confidence            3456777 778999999999999999999995544 444331     124455554331110 11112233333321000


Q ss_pred             CCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh--hCCCEEEEeCCCC
Q psy12625        120 ELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL--SNPSIIFLDEPTT  197 (612)
Q Consensus       120 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~p~illlDEPts  197 (612)
                      ..+++.+.            ..            ..++.....+.....-+....+....++.++  .+|+++++|||++
T Consensus        84 ~~l~~~~~------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~  139 (247)
T 2dr3_A           84 GMFAMVDA------------FT------------AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT  139 (247)
T ss_dssp             TSEEEEEC------------ST------------TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred             CcEEEEec------------ch------------hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence            00000000            00            0000000000000001112222233333333  5799999999999


Q ss_pred             CC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhcccceeeecC
Q psy12625        198 GL--DYLNATNLVKLLRDMA-HQGTMIICTLHQPSAS-------LLNMADYLYVLTE  244 (612)
Q Consensus       198 gL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~  244 (612)
                      .+  |+....+.+..+.+++ +.|.||++++|.....       +.+.+|.++.|+.
T Consensus       140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            88  6655566666666665 4789999999986531       4577899999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.01  E-value=8.4e-11  Score=128.31  Aligned_cols=181  Identities=15%  Similarity=0.164  Sum_probs=113.5

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEEECCEeccchHhhccceEEEccCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIEINETRLQDHRMLRKESCYIMQDNLLQELL  122 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~l  122 (612)
                      ..|+++.+-+++|+++.|.|+||+|||||+..+++...+     ..| .|.+.+.+.......++..+....       .
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-----~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~  258 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-----KTNENVAIFSLEMSAQQLVMRMLCAEGN-------I  258 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-----HSSCCEEEEESSSCHHHHHHHHHHHHHT-------C
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHcC-------C
Confidence            468888888999999999999999999999999885432     123 344433221111111110000000       0


Q ss_pred             CHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHh--hCCCEEEEeCCCCCCC
Q psy12625        123 TVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELL--SNPSIIFLDEPTTGLD  200 (612)
Q Consensus       123 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~p~illlDEPtsgLD  200 (612)
                      .. +.      ++.+ ..+.. ..+++.+.++.++..+..-....++|.+|.+  +.++.++  .+|+++++|+++...+
T Consensus       259 ~~-~~------l~~g-~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~  327 (454)
T 2r6a_A          259 NA-QN------LRTG-KLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG  327 (454)
T ss_dssp             CH-HH------HHTS-CCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred             CH-HH------HhcC-CCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence            00 01      1111 22322 2345555666665444332334679999987  5667776  6899999999998774


Q ss_pred             --------HHHHHHHHHHHHHHHh-CCCEEEEEec---------C--Cc-------hHHHhcccceeeecCCeE
Q psy12625        201 --------YLNATNLVKLLRDMAH-QGTMIICTLH---------Q--PS-------ASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       201 --------~~~~~~i~~~l~~l~~-~g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i  247 (612)
                              .....++.+.|+.+++ .|.+||+++|         +  |.       ..+.+.+|.|++|..++.
T Consensus       328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence                    3344678888888886 5999999999         2  32       136778999999987653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.97  E-value=4.9e-13  Score=136.28  Aligned_cols=127  Identities=13%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL-  117 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~-  117 (612)
                      +...+++++++.+++|  ++|+||||+|||||+++|++...       .|.|.+++.++.+.  ...++.+++++|+.. 
T Consensus        60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  130 (278)
T 1iy2_A           60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKR  130 (278)
T ss_dssp             HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT
T ss_pred             HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3456889999999999  89999999999999999999764       58899988664221  122344667777643 


Q ss_pred             CCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625        118 LQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSI  189 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~i  189 (612)
                      ..+.+++.|++......+.. ......+..+.+.+++             ..|||||+||+.+++++..+|++
T Consensus       131 ~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~  190 (278)
T 1iy2_A          131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI  190 (278)
T ss_dssp             SCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred             cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence            45667777777432211100 0001122223333333             35899999999999999999976

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.97  E-value=1e-09  Score=112.87  Aligned_cols=119  Identities=18%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHH
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEE  126 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e  126 (612)
                      ++++++  +|++++++|+||+||||++..|++...+     ..|+|.+.+.++......                    +
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-----~~~~v~l~~~d~~~~~~~--------------------~  143 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-----KGRRPLLVAADTQRPAAR--------------------E  143 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-----TTCCEEEEECCSSCHHHH--------------------H
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEecCCcccHhHH--------------------H
Confidence            678887  9999999999999999999999998764     357888877664221110                    0


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP-TTGLDYLNAT  205 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP-tsgLD~~~~~  205 (612)
                      .+                     ..+.+..|+.......  .-+-.+.+|.+|+.+...+++++|+||| ++++|.....
T Consensus       144 ql---------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~  200 (295)
T 1ls1_A          144 QL---------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG  200 (295)
T ss_dssp             HH---------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred             HH---------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence            00                     0112233443321100  1223345688999988899999999999 9999998888


Q ss_pred             HHHHHHHHHH
Q psy12625        206 NLVKLLRDMA  215 (612)
Q Consensus       206 ~i~~~l~~l~  215 (612)
                      ++.+..+.+.
T Consensus       201 ~l~~~~~~~~  210 (295)
T 1ls1_A          201 ELARLKEVLG  210 (295)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHhhhcC
Confidence            8888777664

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.96  E-value=5.7e-10  Score=117.47  Aligned_cols=77  Identities=26%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCch------
Q psy12625        176 RLSIALELLSN--PSIIFLDEPTTGL----------DY---LNATNLVKLLRDM----AHQGTMIICTLHQPSA------  230 (612)
Q Consensus       176 Rv~ia~aL~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~------  230 (612)
                      -+.++++++.+  |+++++|||++.+          |+   ..+..+.+.++++    ++.|.+||+++|....      
T Consensus       127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~  206 (349)
T 2zr9_A          127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG  206 (349)
T ss_dssp             HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred             HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence            45577888755  9999999999998          33   2223445555555    3469999999996431      


Q ss_pred             ---------HHHhcccceeeecCCeEEEecC
Q psy12625        231 ---------SLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       231 ---------~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                               .+...+|.++.++.++++..|+
T Consensus       207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          207 SPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                     2457889888888877665554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.95  E-value=6.5e-13  Score=133.31  Aligned_cols=131  Identities=15%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL-  117 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~-  117 (612)
                      +...+++++++.+++|  ++|+||||+|||||+++|++...       .|.+.++|.++...  ...++.+++++|+.. 
T Consensus        36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  106 (254)
T 1ixz_A           36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKR  106 (254)
T ss_dssp             HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT
T ss_pred             HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            3456899999999999  89999999999999999999764       57888888654211  122344666777642 


Q ss_pred             CCCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCC
Q psy12625        118 LQELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEP  195 (612)
Q Consensus       118 l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEP  195 (612)
                      ..+.+++.|++......+.. ......+..+.+.+++             ..|||||+||+.+++++..+|++  +|++
T Consensus       107 ~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~  170 (254)
T 1ixz_A          107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA  170 (254)
T ss_dssp             SSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred             cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence            45566777776432211100 0001122233334433             35789999999999999999986  4544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.94  E-value=1.1e-10  Score=111.67  Aligned_cols=144  Identities=16%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCCCCCC------ceeEEEECCEecc----chHhhccceEEEccCCCC-CCCCCHHH
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPKKTET------NSGYIEINETRLQ----DHRMLRKESCYIMQDNLL-QELLTVEE  126 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~------~~G~I~~~g~~~~----~~~~~~~~i~yv~Q~~~l-~~~lTv~e  126 (612)
                      .++|+|+||||||||++.++|...+....+      .+|+|.++|+++.    +.....+..++++|.... ...++|.+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            689999999999999999999865422111      4789999997642    111111112222221000 00011111


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC----ccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy12625        127 SLTVAAHLKLGNQYSRKAKESKVDSIADSLSI----STCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYL  202 (612)
Q Consensus       127 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~  202 (612)
                      ...... .        +......+++-+...-    ....++  -+|..-..++..+|++++.+|+++++|  ||++|..
T Consensus       111 ~~~~~s-~--------~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~  177 (191)
T 1oix_A          111 IAKHLT-Y--------ENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST  177 (191)
T ss_dssp             TTCHHH-H--------HTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred             CcCHHH-H--------HHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence            100000 0        0000011111110000    000111  123333345688999999999999999  9999999


Q ss_pred             HHHHHHHHHHHH
Q psy12625        203 NATNLVKLLRDM  214 (612)
Q Consensus       203 ~~~~i~~~l~~l  214 (612)
                      +..++++.|.+.
T Consensus       178 ~v~~l~~~l~~~  189 (191)
T 1oix_A          178 NVEAAFQTILTE  189 (191)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999988653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.93  E-value=1.1e-09  Score=112.60  Aligned_cols=141  Identities=16%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHH
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAH  133 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~  133 (612)
                      ++|++++++||||+||||+++.|++...+     .+|                +.+.++.+|..   ..+..|.+...+ 
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-----~~G----------------~~V~lv~~D~~---r~~a~eqL~~~~-  157 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-----EKH----------------KKIAFITTDTY---RIAAVEQLKTYA-  157 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH-----TTC----------------CCEEEEECCCS---STTHHHHHHHHH-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcC----------------CEEEEEecCcc---cchHHHHHHHHH-
Confidence            47999999999999999999999998753     123                24666666542   234555554322 


Q ss_pred             hccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625        134 LKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD  213 (612)
Q Consensus       134 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~  213 (612)
                                          +..|+.....     .+ ++.-+.+|+  .+.+|+++|+|  |+|+|+.....+.++.+-
T Consensus       158 --------------------~~~gl~~~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~  207 (296)
T 2px0_A          158 --------------------ELLQAPLEVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET  207 (296)
T ss_dssp             --------------------TTTTCCCCBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred             --------------------HhcCCCeEec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence                                1123321110     12 233345555  45999999999  999998766555544433


Q ss_pred             HH---hCCCEEEE-EecCCchHHHhcccceeeecCCeEEEe
Q psy12625        214 MA---HQGTMIIC-TLHQPSASLLNMADYLYVLTEGYCTYQ  250 (612)
Q Consensus       214 l~---~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~  250 (612)
                      +.   ..+.++++ ++|+.. ++.+.+|++..+..+.++..
T Consensus       208 l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          208 IPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             SCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred             HhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence            32   22334555 478754 67788898887777777764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.92  E-value=3.3e-11  Score=116.36  Aligned_cols=68  Identities=24%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHH
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEE  126 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e  126 (612)
                      |+++++|++++|+||||||||||+++|+|+.+         .+.+++..+...  ...+..++|++|++..++.+++.+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG   70 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence            56788999999999999999999999999853         255555443221  223567899999876555444433

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.92  E-value=4.9e-11  Score=130.91  Aligned_cols=161  Identities=11%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHHC--CCCCCCCCCceeEEEECCEeccc--hHhhccceEEEccCCCCCC--C
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILAG--YRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQE--L  121 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g--~~~p~~~~~~~G~I~~~g~~~~~--~~~~~~~i~yv~Q~~~l~~--~  121 (612)
                      .+++.+.++..++|.|++||||||+|+.|..  +.++     ..|++.+.+.+...  ...+..    +   +.+..  .
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~-----~p~~v~l~liDpK~~el~~~~~----l---Phl~~~Vv  226 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA-----QPEDVRFIMIDPKMLELSVYEG----I---PHLLTEVV  226 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC-----CTTTEEEEEECCSSSGGGGGTT----C---TTBSSSCB
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC-----CCceEEEEEECCchhhhhhhcc----C---Ccccceee
Confidence            4778888999999999999999999999875  3332     23556555544322  111211    0   11100  0


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCc---ccCCCChhhhhHH----------HHHHHHhhCCC
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNT---LTKHLSGGQKKRL----------SIALELLSNPS  188 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---~~~~LSgGerqRv----------~ia~aL~~~p~  188 (612)
                      -.+.+...   .++.    ...+.++| .+.++..|+.+..+.   ....+||||+||.          .+++++...|.
T Consensus       227 td~~~a~~---~L~~----~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~  298 (512)
T 2ius_A          227 TDMKDAAN---ALRW----CVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY  298 (512)
T ss_dssp             CSHHHHHH---HHHH----HHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred             cCHHHHHH---HHHH----HHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence            11222111   1111    12334444 377888998765432   2236899999863          35666778898


Q ss_pred             -EEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCc
Q psy12625        189 -IIFLDEPTTGLDYLNATNLVKLLRDMAHQ----GTMIICTLHQPS  229 (612)
Q Consensus       189 -illlDEPtsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~  229 (612)
                       ++++||+++-+|.. ...+.+.+.++++.    |.++|++||.|+
T Consensus       299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence             78999999998843 35566777666543    779999999997

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.91  E-value=2.3e-13  Score=134.78  Aligned_cols=193  Identities=11%  Similarity=0.005  Sum_probs=70.8

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH-CCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILA-GYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~-g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      +.+..+++|+++++|++++|+||||||||||+++|+ |+.++     ..+.+.+...+..  ......+.|.+++...+.
T Consensus        13 ~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~   85 (231)
T 3lnc_A           13 EAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAAR--KGEKEGKDYYFVDREEFL   85 (231)
T ss_dssp             ---------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCC--TTCCBTTTBEECCHHHHH
T ss_pred             hhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCC--ccccCCCeEEEecHHHhh
Confidence            356789999999999999999999999999999999 98742     1111111111100  001123345555443332


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHH-HHH-HHHhhCCCEEEEeCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRL-SIA-LELLSNPSIIFLDEPTTG  198 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia-~aL~~~p~illlDEPtsg  198 (612)
                      .+++.+++.....  ...... ....+.+++.++.-. .-..+-.+.. ...-+++. .-+ ..++..|+...+||++.+
T Consensus        86 ~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~~~~~-~vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~  160 (231)
T 3lnc_A           86 RLCSNGEIIEHAE--VFGNFY-GVPRKNLEDNVDKGV-STLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG  160 (231)
T ss_dssp             HHHHTTCEEEEEE--ETTEEE-EEECTTHHHHHHHTC-EEEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred             hhhhcCceehhhh--hccccC-CCCHHHHHHHHHcCC-eEEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence            2222211110000  000000 000112333333311 1111100000 01112322 111 223556777788899999


Q ss_pred             CCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        199 LDYLNATNLVKLLRDMAH-----QGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       199 LD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      .|..+...+.+.|++...     +...++++.|++. ++.+..++++-..+++.
T Consensus       161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~~~~~~  213 (231)
T 3lnc_A          161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRAEQMKT  213 (231)
T ss_dssp             -----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHHHHTBG
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHHHhhcc
Confidence            998888887777765432     1345666667643 56666666665545554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.91  E-value=2.2e-11  Score=137.66  Aligned_cols=161  Identities=12%  Similarity=0.079  Sum_probs=102.2

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC---
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL---  117 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~---  117 (612)
                      +...+++++++.+++|+.++|+||||+|||||+++|++..++.    ..|.+.+++.+..   .....++++++...   
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~----~~~~~~~~~~~~~---~~~p~i~~~p~g~~~~~  117 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE----TLEDILVFPNPED---ENMPRIKTVPACQGRRI  117 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS----SCEEEEEECCTTC---TTSCEEEEEETTHHHHH
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc----cCCeEEEeCCccc---ccCCcEEEEecchHHHH
Confidence            5567899999999999999999999999999999999998752    3488888876632   23456888877431   


Q ss_pred             -------------------CCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        118 -------------------LQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       118 -------------------l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                                         .+..+++.+|+.....-..+...-    .+.....-+.+|.-+......+++|+|++|++.
T Consensus       118 ~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v----~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~  193 (604)
T 3k1j_A          118 VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI----DATGAHAGALLGDVRHDPFQSGGLGTPAHERVE  193 (604)
T ss_dssp             HHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEE----ECTTCCHHHHHCEECCCCC----CCCCGGGGEE
T ss_pred             HHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEE----EcCCCCHHhcCceEEechhhcCCcccccccccc
Confidence                               111111111111000000000000    000001122233322233344679999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRD  213 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~  213 (612)
                      .++....++.+||+||... |++..+..+.+.|.+
T Consensus       194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            9999999999999999988 899988888888764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.88  E-value=4.5e-10  Score=122.43  Aligned_cols=52  Identities=13%  Similarity=0.110  Sum_probs=47.8

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      ..+|+|+|+++++ |+++|+|||||||||||++|+|+.+|     .+|+|.++|+++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-----DLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-----CTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-----CCCEEEECCEEcc
Confidence            4589999999999 99999999999999999999999886     5799999998764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.70  E-value=4.3e-10  Score=111.14  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=41.2

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch----------HhhccceEEEccC
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH----------RMLRKESCYIMQD  115 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~----------~~~~~~i~yv~Q~  115 (612)
                      ++++++ ++++|+|||||||||||++|+|++.|     .+|+|.++|.++...          ...+..++||+|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-----DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-----CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-----CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            455666 89999999999999999999999886     579999999875211          1235679999984

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.68  E-value=1.2e-08  Score=98.00  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy12625        176 RLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA  215 (612)
Q Consensus       176 Rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~  215 (612)
                      ....|++++.+|++.++|  ||++|..+..++.+.|.+..
T Consensus       129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            456799999999999999  99999999999999887654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.60  E-value=8.5e-08  Score=101.42  Aligned_cols=150  Identities=19%  Similarity=0.192  Sum_probs=89.9

Q ss_pred             CCeE-EEEECCCCCcHHHHHHHHHCCCCCC------CCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHH
Q psy12625         55 SKEL-SVILGPSGSGKTKLLDILAGYRRPK------KTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEES  127 (612)
Q Consensus        55 ~Ge~-~aI~GpsGsGKSTLL~~l~g~~~p~------~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~  127 (612)
                      +|-. ++|+|+||||||||+|.|+|...+.      ..+..+|.+.++|.++.    +....|++.+.+.    ..|...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~----l~DT~G~i~~lp~----~lve~f  248 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM----LVDTVGFIRGIPP----QIVDAF  248 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE----EEECCCBCSSCCG----GGHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE----EEeCCCchhcCCH----HHHHHH
Confidence            3444 9999999999999999999976421      01136799999987641    2233555554221    112111


Q ss_pred             HHHHHHhcc--------CCCCCH---HHHHHHHHHHHHHcCCcccc----CcccCCCChhhhhHHHHH----HHH-hhCC
Q psy12625        128 LTVAAHLKL--------GNQYSR---KAKESKVDSIADSLSISTCK----NTLTKHLSGGQKKRLSIA----LEL-LSNP  187 (612)
Q Consensus       128 l~~~~~l~~--------~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~~~~LSgGerqRv~ia----~aL-~~~p  187 (612)
                      -.....++.        ...-..   .+..+.+.++++.+++.+..    ..++..+|+|+++|+.++    +++ ..+|
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~  328 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF  328 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            000001110        001111   22233467788888875543    445667898999988887    555 3344


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy12625        188 SIIFLDEPTTGLDYLNATNLVKLLRDMAH  216 (612)
Q Consensus       188 ~illlDEPtsgLD~~~~~~i~~~l~~l~~  216 (612)
                      ++    +|+|++|..+...+.+.|.++..
T Consensus       329 ~~----~~~SA~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          329 DV----IPISALKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence            54    89999999999999999988754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.59  E-value=6.8e-11  Score=125.48  Aligned_cols=139  Identities=16%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCC-CCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNL-LQEL  121 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~-l~~~  121 (612)
                      ..+++++|+.+++|++++|.||||||||||+++|+|..        .|++..-+.+ .+  .+...+++++|... ++..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~-~~--~~~~~lg~~~q~~~~l~dd  224 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--------GGKALNVNLP-LD--RLNFELGVAIDQFLVVFED  224 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--------CCEEECCSSC-TT--THHHHHGGGTTCSCEEETT
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--------CCcEEEEecc-ch--hHHHHHHHhcchhHHHHHH
Confidence            46899999999999999999999999999999999853        4666552211 11  11223566676653 2222


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH---cCCc-------------cccCcccCCCChhhhhHHHHHHHHhh
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS---LSIS-------------TCKNTLTKHLSGGQKKRLSIALELLS  185 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~~~~LSgGerqRv~ia~aL~~  185 (612)
                      .+....+    .-+.... ........+...++.   +.++             ...++....+++|+++|+..+.+++.
T Consensus       225 ~~~~~~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~  299 (377)
T 1svm_A          225 VKGTGGE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP  299 (377)
T ss_dssp             CCCSTTT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC
T ss_pred             HHHHHHH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC
Confidence            2221110    0000000 000011223333321   0111             12344556799999999999888889


Q ss_pred             CCCEEE-EeCCCC
Q psy12625        186 NPSIIF-LDEPTT  197 (612)
Q Consensus       186 ~p~ill-lDEPts  197 (612)
                      +|++++ ||+|+.
T Consensus       300 ~pDLliyLd~~~~  312 (377)
T 1svm_A          300 KDYLKHCLERSEF  312 (377)
T ss_dssp             CHHHHHHHHTCTH
T ss_pred             CCCeEEEEeCCHH
Confidence            999987 999987

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.58  E-value=4e-08  Score=103.26  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE-EECCEeccchHhhccceEEEccCCCCCCC
Q psy12625         45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI-EINETRLQDHRMLRKESCYIMQDNLLQEL  121 (612)
Q Consensus        45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I-~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~  121 (612)
                      -|+.+-  +=+++|+++.|.||||||||||+..+++...+     ..|.+ ++++....+ ..+.+++++.+|+..+...
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-----~gg~VlyId~E~s~~-~~ra~rlgv~~~~l~i~~~  121 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-----MGGVAAFIDAEHALD-PVYAKNLGVDLKSLLISQP  121 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSCCCC-HHHHHHHTCCGGGCEEECC
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecccccc-hHHHHHcCCchhhhhhhhc
Confidence            345443  36899999999999999999999999986542     23444 666654222 2233456666665444444


Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----ccccCccc-CCCCh--hhhhHHHHHHHHhhCCCEEEEe
Q psy12625        122 LTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----STCKNTLT-KHLSG--GQKKRLSIALELLSNPSIIFLD  193 (612)
Q Consensus       122 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----~~~~~~~~-~~LSg--GerqRv~ia~aL~~~p~illlD  193 (612)
                      .++.+.+....                  .+++.-+.     +....-.. .+++|  ||+|+...||++.         
T Consensus       122 ~~~e~~l~~~~------------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------  174 (356)
T 3hr8_A          122 DHGEQALEIVD------------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------  174 (356)
T ss_dssp             SSHHHHHHHHH------------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------
T ss_pred             cCHHHHHHHHH------------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------
Confidence            55555443321                  11111111     11111111 12333  6777777777765         


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc---------------hHHHhcccceeeecCCeEEEec
Q psy12625        194 EPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS---------------ASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       194 EPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                                  ++++.|+.+++ .+.+||++.|-..               ..+...+|-++.+..+..+.+|
T Consensus       175 ------------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g  236 (356)
T 3hr8_A          175 ------------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEG  236 (356)
T ss_dssp             ------------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred             ------------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccC
Confidence                        56777778776 5888888877621               1144678888888764333333

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.53  E-value=6e-08  Score=105.87  Aligned_cols=59  Identities=25%  Similarity=0.415  Sum_probs=44.1

Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEP----------TTGLDYLNATNLVKLLRDMA----HQGTMIICTLHQPS  229 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~  229 (612)
                      |++++|-.++++....|.+||+||+          ++|.|......+.+++..+.    +.+..||.+||++.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence            6778888899999999999999999          44677777777777777764    25778999999874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.51  E-value=5.5e-09  Score=100.80  Aligned_cols=64  Identities=17%  Similarity=0.076  Sum_probs=41.4

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHh-hccceEEEccCCCC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRM-LRKESCYIMQDNLL  118 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~-~~~~i~yv~Q~~~l  118 (612)
                      ..+-....++|++++|+||||||||||+++|++..         |.+.++|.++..... .+...++++|++..
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~   83 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDEDR   83 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence            33334566899999999999999999999999853         778888876543221 22346777776443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.40  E-value=1.7e-09  Score=118.70  Aligned_cols=132  Identities=14%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCC-C
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNL-L  118 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~-l  118 (612)
                      ...+++++++.+++|  +.|.||||+|||||+++|++...       .|.+.++|.++.+.  ....+.+..++|+.. .
T Consensus        52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~  122 (499)
T 2dhr_A           52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRH  122 (499)
T ss_dssp             CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSS
T ss_pred             chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhc
Confidence            345788999999999  89999999999999999999764       47888888765321  112233455566542 2


Q ss_pred             CCCCCHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC
Q psy12625        119 QELLTVEESLTVAAHLKLG-NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT  197 (612)
Q Consensus       119 ~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts  197 (612)
                      .|.+.+.|++......+.. ......+.++.+.+++.             .|||||+|+..|+++...+|++  |||+..
T Consensus       123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence            3334444444221100000 00112233344455543             4789999999999999999987  788864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.39  E-value=2.7e-07  Score=106.92  Aligned_cols=77  Identities=21%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             CcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhccccee
Q psy12625        163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICT-LHQPSASLLNMADYLY  240 (612)
Q Consensus       163 ~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~i~~~~D~v~  240 (612)
                      ++.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|+++ ||++. .+.+++++.-
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~  263 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAP  263 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCC
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCC
Confidence            34556689999999999999999999999999996 999888777777776655456677774 88864 5667777533

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.37  E-value=1.9e-07  Score=97.48  Aligned_cols=129  Identities=17%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      .-|+.+.+-+++|+++.|.|++|+|||||+.-++....      .      .|          ..+.|+.=      .++
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a------~------~g----------~~Vl~fSl------Ems   85 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL------N------DD----------RGVAVFSL------EMS   85 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH------H------TT----------CEEEEEES------SSC
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------H------cC----------CeEEEEeC------CCC
Confidence            45777777799999999999999999999888876322      0      11          12334321      122


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN  203 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~  203 (612)
                      ..+.                  ..++......+++.+..+   +.||.+|++|++.|...+.++++++.|+|...     
T Consensus        86 ~~ql------------------~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----  139 (338)
T 4a1f_A           86 AEQL------------------ALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----  139 (338)
T ss_dssp             HHHH------------------HHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred             HHHH------------------HHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence            2221                  122222222223322222   57999999999999999999999999998654     


Q ss_pred             HHHHHHHHHHHHh-C-CCEEEEEec
Q psy12625        204 ATNLVKLLRDMAH-Q-GTMIICTLH  226 (612)
Q Consensus       204 ~~~i~~~l~~l~~-~-g~tvi~~~H  226 (612)
                      ..++...++++++ . |..+|++-|
T Consensus       140 i~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          140 IEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEec
Confidence            3366777777765 4 677777744

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.34  E-value=3.2e-07  Score=96.66  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLD-EPTTGLDYLNATNLVKLLRDMAHQGTMIICTL--HQPS  229 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~~  229 (612)
                      .....+|+||+|++. +.+...++-++++| +|++|+|......+++.+.+... +..+|++.  ||..
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred             cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence            445678999998887 66666788889999 99999999998888888777653 67777777  7754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.34  E-value=3.5e-08  Score=98.90  Aligned_cols=53  Identities=23%  Similarity=0.160  Sum_probs=36.4

Q ss_pred             eEEEEeE-EEEEEeeccccccccccccccceEEEEeC---CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         20 NLLFQDI-SYSALYYDTHSYSIKSKDILKDISGVFVS---KELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        20 ~l~~~~l-s~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .|+++|+ ++.|.         +.+++|+|+|+++++   |+.++|+|++||||||+.++|++.+.
T Consensus        17 ~l~~~~~~~~~~~---------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           17 LLETGSLLHSPFD---------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             ceEEcceeeEEec---------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999 88761         346799999999999   99999999999999999999998543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.31  E-value=5.1e-08  Score=97.76  Aligned_cols=65  Identities=22%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHH---CCCCCCCCCCceeEEE--------ECCEeccc---hHhhccce
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILA---GYRRPKKTETNSGYIE--------INETRLQD---HRMLRKES  109 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~---g~~~p~~~~~~~G~I~--------~~g~~~~~---~~~~~~~i  109 (612)
                      .++++.+   ++|++++|+|||||||||++++|+   |+..+     ++|.+.        .+|.++.+   ...+++.+
T Consensus        18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-----d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~   89 (252)
T 4e22_A           18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-----DSGAIYRVLALAALHHQVDISTEEALVPLAAHL   89 (252)
T ss_dssp             -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-----EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTC
T ss_pred             hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-----CCCceehHhHHHHHHcCCCcccHHHHHHHHHcC
Confidence            3555554   789999999999999999999999   88764     689998        88887633   24567789


Q ss_pred             EEEccCC
Q psy12625        110 CYIMQDN  116 (612)
Q Consensus       110 ~yv~Q~~  116 (612)
                      ++++|++
T Consensus        90 ~~~~~~~   96 (252)
T 4e22_A           90 DVRFVSQ   96 (252)
T ss_dssp             CEEEEEE
T ss_pred             CEEEecC
Confidence            9999854

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.30  E-value=1.8e-08  Score=111.87  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=36.2

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee-EEE-ECCEec
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG-YIE-INETRL   99 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G-~I~-~~g~~~   99 (612)
                      .+++|++++|+|+||||||||+++|+|++.|     .+| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-----~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLME-----MGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-----TCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcc-----cCCceEEEECCcHH
Confidence            4779999999999999999999999999875     344 674 888654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.29  E-value=3.1e-07  Score=86.65  Aligned_cols=126  Identities=14%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             cc--cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCce-e---EEEECCEeccchHhhccceEEEccCCCC
Q psy12625         45 IL--KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNS-G---YIEINETRLQDHRMLRKESCYIMQDNLL  118 (612)
Q Consensus        45 iL--~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~-G---~I~~~g~~~~~~~~~~~~i~yv~Q~~~l  118 (612)
                      .+  +++++.+.+| +++|+||||||||||+++|.+++.+..+.... +   ++..+|... .....+..+..++|++..
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~v~~~f~~~~~   91 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKN-EPPAKYAEVAIYFNNEDR   91 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC-----CCSCEEEEEEEECTTC
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeeccccc-CCCCceEEEEEEEeCCCc
Confidence            45  7899999999 99999999999999999999987642111000 0   111111110 000134568888887532


Q ss_pred             C--C---CCCHHHHHHHH--HHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        119 Q--E---LLTVEESLTVA--AHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       119 ~--~---~lTv~e~l~~~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      -  +   .+++...+.-.  ..++...   +....+.+.++++.+++....   ..-++.||.+++.
T Consensus        92 ~~~~~~~~~~i~r~~~~~~~~~~~i~g---~~~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~  152 (182)
T 3kta_A           92 GFPIDEDEVVIRRRVYPDGRSSYWLNG---RRATRSEILDILTAAMISPDG---YNIVLQGDITKFI  152 (182)
T ss_dssp             CSSSSSSEEEEEEEECTTSCEEEEETT---EEECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH
T ss_pred             ccccCCcEEEEEEEEEeCCcEEEEECC---eEcCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH
Confidence            1  1   12222111000  0001000   111245678889999986531   1347788877764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.20  E-value=6.4e-08  Score=93.24  Aligned_cols=53  Identities=19%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEE--EECCEec
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI--EINETRL   99 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I--~~~g~~~   99 (612)
                      +.....+..+...++|++++|+||||||||||+++|++.+.      ..|.+  .++|.++
T Consensus        10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~   64 (200)
T 3uie_A           10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNV   64 (200)
T ss_dssp             CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHH
T ss_pred             cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchh
Confidence            45556777888889999999999999999999999999875      24666  7777553

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.18  E-value=2.8e-07  Score=95.62  Aligned_cols=79  Identities=14%  Similarity=0.062  Sum_probs=57.7

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch------Hhh-----ccceEEE-c
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH------RML-----RKESCYI-M  113 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~------~~~-----~~~i~yv-~  113 (612)
                      ++++|+..++|++++|+||||+||||++..|++...+     ..|+|.+.+.++...      ..+     +..+.++ +
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-----~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~  169 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-----LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKA  169 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-----TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeC
Confidence            3689999999999999999999999999999998764     358898887775332      123     4578899 6


Q ss_pred             cCCCCCCCCCHHHHHH
Q psy12625        114 QDNLLQELLTVEESLT  129 (612)
Q Consensus       114 Q~~~l~~~lTv~e~l~  129 (612)
                      |.....|..++.+++.
T Consensus       170 ~~~~~~p~~~~~~~l~  185 (320)
T 1zu4_A          170 NKLNADPASVVFDAIK  185 (320)
T ss_dssp             SSTTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            6654444334444443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.16  E-value=8.2e-07  Score=101.16  Aligned_cols=132  Identities=11%  Similarity=-0.002  Sum_probs=78.6

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccch--HhhccceEEEccCCCCCCCCCHHHH
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEES  127 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~  127 (612)
                      |+.+++|+.++|+|++|+|||||++.|++...+   ....|+| .+|..+.+.  ...++.+++.+|...+... ++.. 
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~---~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~-   76 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA---KERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV-   76 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS---SSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE-
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC---CCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE-
Confidence            346788999999999999999999999976543   1245777 566554332  2345566666665433221 1000 


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh-hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy12625        128 LTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK-KRLSIALELLSNPSIIFLDEPTTGLDYLNATN  206 (612)
Q Consensus       128 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer-qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~  206 (612)
                                                      ...|+...     ++ ........-..+..++++| |+.|+|+.+.  
T Consensus        77 --------------------------------nliDTpG~-----~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~--  116 (665)
T 2dy1_A           77 --------------------------------FLLDAPGY-----GDFVGEIRGALEAADAALVAVS-AEAGVQVGTE--  116 (665)
T ss_dssp             --------------------------------EEEECCCS-----GGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHH--
T ss_pred             --------------------------------EEEeCCCc-----cchHHHHHHHHhhcCcEEEEEc-CCcccchhHH--
Confidence                                            11121100     00 0112222235678899999 9999998876  


Q ss_pred             HHHHHHHHHhCCCEEEEEecCCc
Q psy12625        207 LVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       207 i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                        +.++.+.+.+..+|++.|..+
T Consensus       117 --~~~~~~~~~~ip~ilv~NKiD  137 (665)
T 2dy1_A          117 --RAWTVAERLGLPRMVVVTKLD  137 (665)
T ss_dssp             --HHHHHHHHTTCCEEEEEECGG
T ss_pred             --HHHHHHHHccCCEEEEecCCc
Confidence              333444456788888888865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.16  E-value=2.3e-07  Score=89.49  Aligned_cols=127  Identities=13%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLG  137 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~  137 (612)
                      +++|+|||||||||+.+.|+++          |...+++.+     ..+...    +     +                 
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l----------g~~~id~d~-----~~~~~~----~-----~-----------------   42 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL----------GVPLVDADV-----VAREVV----A-----K-----------------   42 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT----------TCCEEEHHH-----HHHHTT----C-----S-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHC----------CCcccchHH-----HHHHHc----c-----C-----------------
Confidence            6899999999999999999983          222232211     111100    0     0                 


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy12625        138 NQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ  217 (612)
Q Consensus       138 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~  217 (612)
                       .      ...+.++.+.+|....       .+.|+.+|..++.....+|+.+..+  ++.++|.....+.+.+++.  .
T Consensus        43 -~------~~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~  104 (206)
T 1jjv_A           43 -D------SPLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T  104 (206)
T ss_dssp             -S------CHHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred             -C------hHHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence             0      0123445555664322       3678999999999888888654333  3355666655555544332  3


Q ss_pred             CCEEEEEecCCchH-HHhcccceeeec
Q psy12625        218 GTMIICTLHQPSAS-LLNMADYLYVLT  243 (612)
Q Consensus       218 g~tvi~~~H~~~~~-i~~~~D~v~~L~  243 (612)
                      +.++|+.+|..... ....||.+++++
T Consensus       105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A          105 APYTLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence            55788888875431 245567666653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.10  E-value=1.9e-06  Score=93.37  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee-ecCCeEEEecCccC--hhhH-
Q psy12625        185 SNPSIIFLDEPTTGLDY-LNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV-LTEGYCTYQGTVPG--LVPY-  259 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~~--~~~~-  259 (612)
                      .+|++|++||+..-.+. .++..+.+.+..+.+.|+.||+++|.+..++..+.+++.- +..|.++..++++.  .... 
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL  272 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA  272 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence            48999999999887764 6788899999998888899999999865443334455544 56677777777653  2222 


Q ss_pred             ---HhhcCCCCCCCCCchhHHHHhc
Q psy12625        260 ---LSDFGYQCPSNYNPADYVIEVS  281 (612)
Q Consensus       260 ---f~~~g~~~p~~~~~ad~~~~~~  281 (612)
                         .+..|...++  +..+++.+..
T Consensus       273 ~~~~~~~~~~i~~--e~l~~la~~~  295 (440)
T 2z4s_A          273 RKMLEIEHGELPE--EVLNFVAENV  295 (440)
T ss_dssp             HHHHHHHTCCCCT--THHHHHHHHC
T ss_pred             HHHHHHcCCCCCH--HHHHHHHHhc
Confidence               3344554443  3455555443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.10  E-value=2.6e-06  Score=88.14  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=82.7

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      .-|+++.+-+++|+++.|.|++|+|||||+.-++...-      ..|                ..+.|+.=+      ++
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a------~~g----------------~~vl~~slE------~s  107 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS------DND----------------DVVNLHSLE------MG  107 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH------TTT----------------CEEEEEESS------SC
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------HcC----------------CeEEEEECC------CC
Confidence            45777777799999999999999999999887764211      001                123443321      22


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN  203 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~  203 (612)
                      ..+..                  +++......+++.+..+.. ..||.+|++|+..|...+.++++++.|+|...     
T Consensus       108 ~~~l~------------------~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----  163 (315)
T 3bh0_A          108 KKENI------------------KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----  163 (315)
T ss_dssp             HHHHH------------------HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred             HHHHH------------------HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence            22221                  1222222222222222111 23899999999999999999999999998643     


Q ss_pred             HHHHHHHHHHHHh-CCCE--EEEEec
Q psy12625        204 ATNLVKLLRDMAH-QGTM--IICTLH  226 (612)
Q Consensus       204 ~~~i~~~l~~l~~-~g~t--vi~~~H  226 (612)
                      ..++.+.++++.+ .|..  +|++-|
T Consensus       164 ~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          164 VNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            3456677777765 4666  777654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=1.3e-06  Score=84.00  Aligned_cols=40  Identities=18%  Similarity=-0.021  Sum_probs=24.7

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +...+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3456899999999999999999999999999999999754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.08  E-value=6.3e-08  Score=100.41  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             cccccccceEEEEeCCe------EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         41 KSKDILKDISGVFVSKE------LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +.++.|++++..+.+++      +++|+||||||||||+++|++++.
T Consensus        71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45667888888887776      999999999999999999999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.05  E-value=7.7e-06  Score=86.07  Aligned_cols=44  Identities=9%  Similarity=0.055  Sum_probs=36.1

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH---QGTMIICTLHQPS  229 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~~  229 (612)
                      .+|.++++||+... |......+.+.+.++..   .+.++|+++|++.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            45889999999876 88888888888877665   5788999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.03  E-value=2.1e-06  Score=82.28  Aligned_cols=31  Identities=26%  Similarity=0.206  Sum_probs=27.4

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      ++++|++++|+||||||||||+++|+++..|
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            5789999999999999999999999998854

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.99  E-value=3.5e-07  Score=85.73  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+|++++|+|||||||||+++.|++..         |.+.+++.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence            468999999999999999999999853         5677777554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.96  E-value=3.3e-05  Score=78.51  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=42.0

Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHHH
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYL----------NATNLVKLLRDMAH----QGTMIICTLHQPS---ASLL  233 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~i~  233 (612)
                      ++++.|..++.+...+|.++++||+.+-++..          ....++..+.....    .+..||.+++++.   ..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~  177 (297)
T 3b9p_A           98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL  177 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence            46666777777778899999999998776532          22334444443321    2356777888753   2334


Q ss_pred             hccccee
Q psy12625        234 NMADYLY  240 (612)
Q Consensus       234 ~~~D~v~  240 (612)
                      +.||+.+
T Consensus       178 ~R~~~~i  184 (297)
T 3b9p_A          178 RRFTKRV  184 (297)
T ss_dssp             HHCCEEE
T ss_pred             hhCCeEE
Confidence            4455443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.95  E-value=2.9e-06  Score=80.16  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEEC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN   95 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~   95 (612)
                      .+|++++|+||||||||||++.|++..++    ...|.|...
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~----~~~~~i~~t   40 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD----RFAYPIPHT   40 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTT----TEECCCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCc----cEEEeeecc
Confidence            36899999999999999999999998652    245555443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.93  E-value=2.8e-05  Score=81.40  Aligned_cols=139  Identities=13%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT  129 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~  129 (612)
                      +-+++|+++.|.||+|+|||||+..++... .|.......                 ..+.|+.-+..+    ...+-..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~-----------------~~vlyi~~E~~~----~~~~l~~  175 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPG-----------------GKIIFIDTENTF----RPDRLRD  175 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCC-----------------CEEEEEESSSCC----CHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCC-----------------CeEEEEECCCCC----CHHHHHH
Confidence            468999999999999999999999888742 211000001                 123344332211    1111111


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh-hhHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q psy12625        130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ-KKRLSIALELL----SNPSIIFLDEPTTGLDYL--  202 (612)
Q Consensus       130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~----~~p~illlDEPtsgLD~~--  202 (612)
                      ....+.    ...       +++++.+-+.       ...++.+ .+.+..++.++    .+++++++|+.++-.+..  
T Consensus       176 ~~~~~g----~~~-------~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~  237 (343)
T 1v5w_A          176 IADRFN----VDH-------DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS  237 (343)
T ss_dssp             HHHHTT----CCH-------HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred             HHHHcC----CCH-------HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence            111111    111       1223322111       1123332 24455556665    569999999999866432  


Q ss_pred             ----------HHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625        203 ----------NATNLVKLLRDMAH-QGTMIICTLHQP  228 (612)
Q Consensus       203 ----------~~~~i~~~l~~l~~-~g~tvi~~~H~~  228 (612)
                                ...+++..|+++++ .+.+||++.|-.
T Consensus       238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~  274 (343)
T 1v5w_A          238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT  274 (343)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence                      13456666777766 588888887764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.85  E-value=3.8e-06  Score=82.69  Aligned_cols=40  Identities=25%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .+.++|++++|.|+||||||||+++|+|+         .|+|.+++++.
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~   54 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV   54 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence            34579999999999999999999999996         26788888763

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.85  E-value=3.6e-05  Score=80.89  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQG-TMIICTLH  226 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H  226 (612)
                      +-++.++++..+++..+.+|+++++.-..+..|... ....++++++...| .+|++.+.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            356788999999999999999887774334455443 45566777766555 46666654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.83  E-value=7.9e-06  Score=79.08  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      ++|++++|+||||||||||++.|++..++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.77  E-value=2.7e-05  Score=79.92  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CChhhhhHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHhcccceee
Q psy12625        169 LSGGQKKRLSIALELL--SNPSIIFLDEPTTGLDYLN-ATNLVKLLRDMAHQ-GT--MIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       169 LSgGerqRv~ia~aL~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      +|+|++   .+++.+.  ..|.++++    +.+|... +..+.+.++++++. |.  .+.++.|+-. .+..++|.+.-
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~  171 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK  171 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence            888886   4566666  68999998    7899876 67788888888763 43  5667777754 57778887763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.77  E-value=5.4e-05  Score=78.49  Aligned_cols=139  Identities=20%  Similarity=0.245  Sum_probs=74.8

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCC-CCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYR-RPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLT  129 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~-~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~  129 (612)
                      +-+++|+++.|.||+|+|||||+..++... .+.    ..|     |        ....+.|+.-+..+    ...+-..
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~----~~g-----g--------~~~~vlyi~~e~~~----~~~~l~~  160 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP----EKG-----G--------LSGKAVYIDTEGTF----RWERIEN  160 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG----GGT-----C--------CSCEEEEEESSSCC----CHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc----ccC-----C--------CCCeEEEEECCCCC----CHHHHHH
Confidence            568999999999999999999998887642 210    000     0        01123344332211    1111111


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChh-hhhHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q psy12625        130 VAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGG-QKKRLSIALELL---SNPSIIFLDEPTTGLDY----  201 (612)
Q Consensus       130 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~---~~p~illlDEPtsgLD~----  201 (612)
                      ....+.    ...       +++++.+-+.       ...++. +.+.+..++.++   .+|+++++|+.++-.+.    
T Consensus       161 ~~~~~g----~~~-------~~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~  222 (324)
T 2z43_A          161 MAKALG----LDI-------DNVMNNIYYI-------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG  222 (324)
T ss_dssp             HHHHTT----CCH-------HHHHHTEEEE-------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred             HHHHhC----CCH-------HHHhccEEEE-------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence            111111    111       1122211111       112222 235677777777   57999999999976532    


Q ss_pred             ----HH----HHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625        202 ----LN----ATNLVKLLRDMAH-QGTMIICTLHQP  228 (612)
Q Consensus       202 ----~~----~~~i~~~l~~l~~-~g~tvi~~~H~~  228 (612)
                          ..    ..+++..|+++++ .+.+||++.|-.
T Consensus       223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~  258 (324)
T 2z43_A          223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM  258 (324)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence                11    2455666666665 588988887753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.67  E-value=5.4e-06  Score=79.74  Aligned_cols=41  Identities=24%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .++|++++|+|+||||||||++.|++.+++     ..|.|.+.+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-----~~~~v~~~~~d   59 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-----QGISVCVFHMD   59 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEEGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-----cCCeEEEeccC
Confidence            578999999999999999999999998753     34677665544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.67  E-value=2.2e-05  Score=75.47  Aligned_cols=30  Identities=27%  Similarity=0.071  Sum_probs=27.2

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++++|+|+||||||||++.|++..
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            356789999999999999999999999965

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.66  E-value=8.1e-05  Score=80.03  Aligned_cols=125  Identities=10%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL  134 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l  134 (612)
                      ++.+++++||+||||||++..|++.+.+     ..++|.+-+.+....                    ...|.+      
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-----~G~kVllv~~D~~r~--------------------~a~eqL------  144 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-----RGYKVGLVAADVYRP--------------------AAYDQL------  144 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH-----TTCCEEEEEECCSCH--------------------HHHHHH------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEecCccch--------------------hHHHHH------
Confidence            5899999999999999999999987653     234454433321100                    011111      


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q psy12625        135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPT-TG--LDYLNATNLVKLL  211 (612)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPt-sg--LD~~~~~~i~~~l  211 (612)
                                     ...-+..|+.-.....  ...--+--+-+++.+...+++++|+|+|- .+  .|+....++.+++
T Consensus       145 ---------------~~~~~~~gv~~~~~~~--~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~  207 (433)
T 3kl4_A          145 ---------------LQLGNQIGVQVYGEPN--NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY  207 (433)
T ss_dssp             ---------------HHHHHTTTCCEECCTT--CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred             ---------------HHHHHhcCCceeeccc--cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence                           1222233332211100  00111111224555555689999999997 34  7887777777766


Q ss_pred             HHHHhCCCEEEEEecC
Q psy12625        212 RDMAHQGTMIICTLHQ  227 (612)
Q Consensus       212 ~~l~~~g~tvi~~~H~  227 (612)
                      +.+......+++..|.
T Consensus       208 ~~~~pd~vlLVlDa~~  223 (433)
T 3kl4_A          208 DVLKPDDVILVIDASI  223 (433)
T ss_dssp             HHHCCSEEEEEEEGGG
T ss_pred             HhhCCcceEEEEeCcc
Confidence            6554444455555554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.61  E-value=3.5e-06  Score=82.13  Aligned_cols=59  Identities=22%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEE--------CCEeccch---HhhccceEEEccCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI--------NETRLQDH---RMLRKESCYIMQDN  116 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~--------~g~~~~~~---~~~~~~i~yv~Q~~  116 (612)
                      +.+++|+|||||||||+.+.|++.+..  ...++|++..        +|.++.+.   ..+++.+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~--~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQW--HLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTC--EEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC--CcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            568999999999999999999986521  0125687776        66654321   34567788888864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.60  E-value=7e-05  Score=76.68  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .++++..+.|.||+|+|||||+++|++...
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            467889999999999999999999998653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.60  E-value=1.3e-05  Score=83.92  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++..+.|.||+|+|||||++.+++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999998654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.59  E-value=3.5e-05  Score=70.63  Aligned_cols=31  Identities=35%  Similarity=0.564  Sum_probs=25.7

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++.++.+.+| +++|+|||||||||++++|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4455666665 999999999999999999873

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.57  E-value=2.3e-05  Score=75.31  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=26.3

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+|++++|+||||||||||++.|++..+
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34899999999999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.57  E-value=2.4e-05  Score=72.72  Aligned_cols=27  Identities=30%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .|++++|+||||||||||+++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            477899999999999999999999764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.54  E-value=3.7e-06  Score=87.64  Aligned_cols=41  Identities=22%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             cccccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         41 KSKDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +...+++.++..++.|++  +.+.||+|+||||+++++++.+.
T Consensus        29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            456688999999999999  99999999999999999999764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.46  E-value=0.00023  Score=73.36  Aligned_cols=46  Identities=9%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        184 LSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       184 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ..+|++|++||+.. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~  142 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP  142 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence            35799999999865 23447788889999888777777777777654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.42  E-value=2.9e-05  Score=76.46  Aligned_cols=67  Identities=7%  Similarity=-0.034  Sum_probs=39.9

Q ss_pred             ChhhhhHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccc
Q psy12625        170 SGGQKKRLSIALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY  238 (612)
Q Consensus       170 SgGerqRv~ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~  238 (612)
                      +.|.-.+.  ....+.+-+++++||.-. ++|.......++.+.+...+-++++++.--+...+.++++.
T Consensus       162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~  229 (235)
T 3llm_A          162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN  229 (235)
T ss_dssp             EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred             CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence            44554444  233578999999999976 68877765555555444333345655544444445555543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=0.00016  Score=67.68  Aligned_cols=70  Identities=3%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeE---EEecCccChh
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYC---TYQGTVPGLV  257 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i---v~~G~~~~~~  257 (612)
                      .+++++++   .+-.|......+.+..+++++ .|..++.+++.....+.++++.+.-.-+++.   .|.+..+++.
T Consensus       111 ~~~piilv---~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~  184 (188)
T 2wjg_A          111 MGANLLLA---LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEPYI  184 (188)
T ss_dssp             TTCCEEEE---EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC--------------
T ss_pred             cCCCEEEE---EEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence            45566655   345555444333333445544 3566666666555467778887766655554   5555555443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.36  E-value=0.0034  Score=65.77  Aligned_cols=35  Identities=29%  Similarity=0.257  Sum_probs=28.0

Q ss_pred             cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -|+.+-  +=+++|+++.|.||+|+|||||...++..
T Consensus        50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            355543  35899999999999999999998777653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.35  E-value=2.3e-05  Score=87.13  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=41.5

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ...+++++++.+ +|+.++|+||||+|||||+++|++...+     ..|+|.++|..
T Consensus        95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~  145 (543)
T 3m6a_A           95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGVR  145 (543)
T ss_dssp             HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC--
T ss_pred             HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEecccc
Confidence            345678888888 8999999999999999999999998764     46888777643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.35  E-value=1.1e-05  Score=84.49  Aligned_cols=53  Identities=15%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.+.+++++++..++|.+++|+|++|+|||||++.|++...+     ..|++.+-+.+
T Consensus        41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-----~~~~v~v~~~d   93 (341)
T 2p67_A           41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-----EGLKVAVIAVD   93 (341)
T ss_dssp             HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-----TTCCEEEEEEC
T ss_pred             HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCeEEEEeec
Confidence            456788999999999999999999999999999999997653     23455544433

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.32  E-value=0.0005  Score=74.37  Aligned_cols=129  Identities=15%  Similarity=0.111  Sum_probs=78.3

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLT  123 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lT  123 (612)
                      .-|+.+.+-+++|+++.|.|++|+|||||+.-++.....     ..      |          ..+.|+.=+      ++
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-----~~------g----------~~vl~~slE------~~  240 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-----KE------G----------VGVGIYSLE------MP  240 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TT------C----------CCEEEEESS------SC
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hC------C----------CeEEEEECC------CC
Confidence            356777767999999999999999999998887763220     00      1          123443321      22


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy12625        124 VEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLN  203 (612)
Q Consensus       124 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~  203 (612)
                      ..+                  ...+...  ...|++.. +-.-+.|+..+.+|+.-|...+.+.++.+.|+|..  +.  
T Consensus       241 ~~~------------------l~~R~~~--~~~~i~~~-~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~--  295 (444)
T 2q6t_A          241 AAQ------------------LTLRMMC--SEARIDMN-RVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL--  295 (444)
T ss_dssp             HHH------------------HHHHHHH--HHTTCCTT-TCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH--
T ss_pred             HHH------------------HHHHHHH--HHcCCCHH-HHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH--
Confidence            111                  1111111  12233211 11125699999999999988888889998887643  33  


Q ss_pred             HHHHHHHHHHHHh-CCCEEEEEe
Q psy12625        204 ATNLVKLLRDMAH-QGTMIICTL  225 (612)
Q Consensus       204 ~~~i~~~l~~l~~-~g~tvi~~~  225 (612)
                       .++...++++.+ .|..+|++-
T Consensus       296 -~~l~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          296 -MEVRARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             -HHHHHHHHHHHHHSCCCEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCEEEEc
Confidence             345566666654 566666663

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.29  E-value=5.6e-05  Score=72.20  Aligned_cols=25  Identities=32%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.|.||+|+|||||+++|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999997543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.26  E-value=0.00035  Score=64.87  Aligned_cols=27  Identities=37%  Similarity=0.480  Sum_probs=23.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|..++|+|++|+|||||++.|+|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468889999999999999999999964

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.25  E-value=0.0012  Score=64.80  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecC
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH--QGTMIICTLHQ  227 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H~  227 (612)
                      .+|+++++..+.+.++......+..+++.+..  ...++|+.+|-
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            47899999999888888666555555444322  23577787773

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.25  E-value=2.4e-05  Score=82.20  Aligned_cols=52  Identities=23%  Similarity=0.356  Sum_probs=42.1

Q ss_pred             eEEEEeEEEEEEeecccccccccccccc--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILK--------------DISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+||++.|+         .++..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP---------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHA---------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESC---------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCC---------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            345566665552         3456788              899999999999999999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.24  E-value=0.00039  Score=70.77  Aligned_cols=25  Identities=40%  Similarity=0.510  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.|.||+|+|||||.++|++...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            6899999999999999999999764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.23  E-value=0.00017  Score=69.54  Aligned_cols=31  Identities=35%  Similarity=0.564  Sum_probs=25.5

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++.++.+.+| +++|+|||||||||++++|.-
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            3456666665 999999999999999998863

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.22  E-value=0.00023  Score=76.84  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC----CC---CCCCceeEEEECCEecc--chHhhccceEEEccCCCCCCCCCHHHHH
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR----PK---KTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESL  128 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~----p~---~~~~~~G~I~~~g~~~~--~~~~~~~~i~yv~Q~~~l~~~lTv~e~l  128 (612)
                      .++|+|+||+|||||+|.|+|...    +.   ......|.+.++|+++.  +....++..++.+|....+..++..+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i  261 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI  261 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            789999999999999999999753    10   01135799999998642  2222333444544544444444444554


Q ss_pred             HH
Q psy12625        129 TV  130 (612)
Q Consensus       129 ~~  130 (612)
                      ..
T Consensus       262 ~~  263 (439)
T 1mky_A          262 EK  263 (439)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.20  E-value=0.00041  Score=69.80  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=24.7

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +.++.-+.|.||+|+|||||+++++....
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            35667799999999999999999998643

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.20  E-value=0.00035  Score=68.40  Aligned_cols=53  Identities=26%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT  243 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~  243 (612)
                      +|+++++||--. |+.    .+++.++.+++.|..||++-|         .++..+..++|+|..|.
T Consensus        89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 654    355666777778999999999         66678889999999886

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.18  E-value=0.00016  Score=71.03  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=27.2

Q ss_pred             cccceEEEEe---CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         45 ILKDISGVFV---SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        45 iL~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -|.++|+++.   +|.+++|.||+||||||+++.|+..+.
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4677888777   999999999999999999999999775

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.17  E-value=0.0012  Score=71.51  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      -|+.+.+=+++|+++.|.|++|+|||||+--++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            4666655689999999999999999999766654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.11  E-value=0.00032  Score=68.10  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy12625        185 SNPSIIFLDEPTTGL-DYLNATNLVKLLRDMAHQGTM-IICTLHQPS  229 (612)
Q Consensus       185 ~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~  229 (612)
                      .+|.++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~  149 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP  149 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence            578999999965432 233377788888887776654 777777543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.08  E-value=9.7e-05  Score=77.42  Aligned_cols=40  Identities=13%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +++.+++|+|++|||||||+|.|+|...+     ..|+|.+.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-----~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-----RGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhh-----cCCeEEEEeec
Confidence            46889999999999999999999997653     34666665544

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.08  E-value=0.00025  Score=66.34  Aligned_cols=28  Identities=29%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|++++|+|++||||||+.+.|++.++
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.07  E-value=1.6e-05  Score=83.82  Aligned_cols=47  Identities=21%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.++|++..+          +++.+++++++.|      +|+|+||+|||||++.|.|...
T Consensus        16 ~~v~~~~l~~~~----------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~   62 (361)
T 2qag_A           16 GYVGFANLPNQV----------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL   62 (361)
T ss_dssp             -----CCHHHHH----------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred             ceEEeccchHHh----------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence            346666665443          5567899999887      9999999999999999988644

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.01  E-value=0.00066  Score=64.03  Aligned_cols=52  Identities=27%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC----CCCCCCceeEEEECCE
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR----PKKTETNSGYIEINET   97 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~----p~~~~~~~G~I~~~g~   97 (612)
                      .+++++|+..++. .++++|++|+|||||++.+.+-..    |+. ....+.+.++|.
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~-~~~~~~~~~~~~   67 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTW-HPTSEELAIGNI   67 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCC-SCEEEEEEETTE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCC-CCCeEEEEECCE
Confidence            4789999998887 568999999999999999997422    111 123556666553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.98  E-value=0.0003  Score=67.43  Aligned_cols=29  Identities=28%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+|.+++|+||||||||||.+.|+...+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45899999999999999999999988653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.98  E-value=0.0019  Score=66.40  Aligned_cols=33  Identities=27%  Similarity=0.388  Sum_probs=27.4

Q ss_pred             ccceE-EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         46 LKDIS-GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        46 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      |+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus        87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44433 5689999999999999999999887774

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.93  E-value=0.00075  Score=71.15  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~   77 (612)
                      +++..+++.+| +++|.|||||||||+|.+|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            36677778775 99999999999999999986

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.93  E-value=0.00034  Score=65.98  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             ceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         48 DISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        48 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+...+|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            56778888999999999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.91  E-value=0.0002  Score=69.06  Aligned_cols=41  Identities=17%  Similarity=0.014  Sum_probs=33.3

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCcee--EEEECCE
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSG--YIEINET   97 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G--~I~~~g~   97 (612)
                      .+++|.+++|.|++||||||+.+.|++.+.|     ..|  .+.++|.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----~~g~~~~~~~~d   63 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR-----DRRVHAYRLDGD   63 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-----HHCCCEEEECHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----ccCCcEEEECCh
Confidence            3578999999999999999999999997653     346  6777653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.90  E-value=0.0036  Score=65.51  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..-+.|.||+|+|||||.++|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456678999999999999999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.85  E-value=0.00028  Score=67.19  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus        13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence            468999999888885 689999999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.83  E-value=0.0011  Score=69.21  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=23.8

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+..+.|.||+|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.82  E-value=0.0023  Score=63.21  Aligned_cols=27  Identities=33%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++..-+.|.||+|+|||||.+.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            445568899999999999999998753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.81  E-value=0.0017  Score=59.47  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .++|+|+||+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999999643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.78  E-value=0.00049  Score=65.62  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHC
Q psy12625         58 LSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999998

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.76  E-value=0.011  Score=61.01  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+..-+.|.||+|+|||||.++++...
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3566778899999999999999999864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.70  E-value=0.019  Score=60.30  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            589999999999999999999876654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.67  E-value=0.011  Score=64.85  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=27.6

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      -|+.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus       231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            4555555589999999999999999999766654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.66  E-value=0.00019  Score=74.92  Aligned_cols=39  Identities=21%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             cccccceEEEEeCCeE--EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         43 KDILKDISGVFVSKEL--SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+++.++..+++|+.  ++|+|++||||||+.++|++.+.
T Consensus         9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4578889888999998  99999999999999999998653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.65  E-value=0.00039  Score=74.62  Aligned_cols=47  Identities=23%  Similarity=0.170  Sum_probs=39.4

Q ss_pred             cceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         47 KDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        47 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      +++++.  +|++++++|+|||||||++..|++.+.+     ..|+|.+.+.++.
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-----~g~~Vllvd~D~~  137 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-----KGRRPLLVAADTQ  137 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCSS
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEeecccc
Confidence            577777  8999999999999999999999998874     3577888776643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.61  E-value=0.0008  Score=63.24  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      .+++|+|+||||||||++.|.+.+++.  ...-|.|..++++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~--g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCAR--GIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcccc--CCceeEEeeCCCc
Confidence            588999999999999999999875421  1234777776543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.59  E-value=0.00097  Score=62.65  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+|.++.|.|++||||||+.+.|++.+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999998765

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.59  E-value=0.0011  Score=62.10  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .+|.+++|.|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999985

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.58  E-value=0.00047  Score=68.62  Aligned_cols=46  Identities=17%  Similarity=0.162  Sum_probs=35.3

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      ++++.+ ..+++.++.|+|+|||||||+.+.|+....       .|.+.+++..
T Consensus        22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~   67 (253)
T 2p5t_B           22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDS   67 (253)
T ss_dssp             HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGG
T ss_pred             HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHH
Confidence            455555 677889999999999999999999998654       1446666543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.00085  Score=63.97  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+++|.|+|||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.52  E-value=0.0016  Score=66.76  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.-+.|.||+|+|||+|+++|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.47  E-value=0.0015  Score=60.58  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      |.++.|.|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.46  E-value=0.0014  Score=60.21  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++|.|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.37  E-value=0.0011  Score=65.68  Aligned_cols=35  Identities=29%  Similarity=0.568  Sum_probs=24.8

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .++++++..++|  +.|.||||+|||||+++|++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            345555555555  88999999999999999998654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.37  E-value=0.0013  Score=69.66  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=33.6

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCCC-----CCC-CCCceeEEEECCE
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYRR-----PKK-TETNSGYIEINET   97 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~-----p~~-~~~~~G~I~~~g~   97 (612)
                      -..+..|..++|+|+||+|||||+|.|+|...     |.. ..+..|.+.++|.
T Consensus        16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            33567888999999999999999999999721     100 1235788877664

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.35  E-value=0.0011  Score=68.50  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      ++.++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence            677999999 788999888888888876543 345666666654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0017  Score=63.74  Aligned_cols=28  Identities=29%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .-.+|.+++|+|++||||||+.+.|++.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999999974

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.29  E-value=0.0018  Score=60.47  Aligned_cols=23  Identities=43%  Similarity=0.603  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.++|..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999964

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.27  E-value=0.0022  Score=60.00  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      |.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998743

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.27  E-value=0.00034  Score=71.58  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             cc-eEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         47 KD-ISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        47 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      ++ ++++.+ |++++++|+||+||||++..|++...+     ..|+|.+.+.+.
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-----~g~~v~l~~~D~  136 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-----KGFKVGLVGADV  136 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-----TTCCEEEEECCC
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEecCC
Confidence            45 777765 999999999999999999999998763     246677665553

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.25  E-value=0.016  Score=59.33  Aligned_cols=28  Identities=36%  Similarity=0.578  Sum_probs=22.7

Q ss_pred             EEEeCCeEEEEECCCCCcHHHH-HHHHHCC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKL-LDILAGY   79 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTL-L~~l~g~   79 (612)
                      +=+++| ++.|.||+|+||||| |.+++..
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            457899 999999999999999 5555543

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.25  E-value=0.0057  Score=58.24  Aligned_cols=53  Identities=23%  Similarity=0.479  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT  243 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~  243 (612)
                      +.+++++||--- +|+.    .++.++++++.|..||++-+         .++.++..++|.|.-|+
T Consensus        81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999543 6543    36677888878999999999         55678889999998876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.24  E-value=0.0021  Score=63.21  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .-+++|.||+||||||+.+.|+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999864

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.23  E-value=0.0062  Score=62.64  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=25.3

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +-+.+|.++.|.||+|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999999999998874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.22  E-value=0.0073  Score=74.59  Aligned_cols=29  Identities=28%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      =+++|+++.|.||+|+|||||+..++...
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a  756 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence            49999999999999999999998887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.20  E-value=0.0052  Score=57.44  Aligned_cols=22  Identities=27%  Similarity=0.214  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999766654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.16  E-value=0.014  Score=58.99  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++.-+.|.||+|+|||||.+.++....
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556789999999999999999987653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.15  E-value=0.0023  Score=63.60  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+++|+||||||||||.+.|++..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.14  E-value=0.0025  Score=59.83  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.06  E-value=0.0029  Score=60.09  Aligned_cols=23  Identities=48%  Similarity=0.598  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999987654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.05  E-value=0.0031  Score=57.71  Aligned_cols=19  Identities=37%  Similarity=0.676  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q psy12625         58 LSVILGPSGSGKTKLLDIL   76 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l   76 (612)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.04  E-value=0.0033  Score=58.74  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999999998643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.98  E-value=0.0038  Score=60.15  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.97  E-value=0.004  Score=59.19  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.+++|.|++||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.97  E-value=0.0037  Score=59.17  Aligned_cols=26  Identities=27%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +|.+++|.|++||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.97  E-value=0.0032  Score=58.65  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++..+.|.|++||||||+.+.|+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999853

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.96  E-value=0.0036  Score=59.10  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            58999999999999999999854

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.94  E-value=0.017  Score=60.22  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..-+.|.||+|+|||||.++++...
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            445568899999999999999999754

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.91  E-value=0.034  Score=58.65  Aligned_cols=26  Identities=31%  Similarity=0.485  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++.-+.|.||+|+|||+|.++|+...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            46688999999999999999998754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.90  E-value=0.089  Score=65.13  Aligned_cols=34  Identities=29%  Similarity=0.286  Sum_probs=27.4

Q ss_pred             cccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         45 ILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        45 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      -|+.+-  +=+++|+++.|.||+|+|||||.--++.
T Consensus       370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            455554  3589999999999999999999766654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.90  E-value=0.0043  Score=57.32  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.89  E-value=0.0064  Score=66.46  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+..-+.|.||+|+|||+|.++|+...
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            3455668999999999999999998753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.86  E-value=0.0038  Score=63.32  Aligned_cols=37  Identities=27%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      -..|.++.|.|||||||||+.+.|+...+       .|.+.+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence            34578999999999999999999987543       14466664

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.85  E-value=0.0041  Score=57.69  Aligned_cols=23  Identities=39%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.81  E-value=0.0043  Score=59.13  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=23.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+|.+++|.|++||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999864

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.80  E-value=0.013  Score=56.69  Aligned_cols=53  Identities=21%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhcccceeeec
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLH---------QPSASLLNMADYLYVLT  243 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~  243 (612)
                      +.+++++||--- +|..    .++.++++++.|+.||++-+         .+...+..+||.|.-|+
T Consensus       101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            579999999865 6543    33777887778999999999         78888999999999886

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.75  E-value=0.0048  Score=57.91  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++.+++|.|++||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            36779999999999999999999864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.73  E-value=0.0021  Score=62.75  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             HHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q psy12625        179 IALELLSNPSIIFLDEPTT-GLDYLNATNLVKLLRDMAHQGTMIICTLHQ  227 (612)
Q Consensus       179 ia~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~  227 (612)
                      +..++..+|+++++||+-. ..+........+.+..+...|..++.|+|-
T Consensus        77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl  126 (228)
T 2r8r_A           77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV  126 (228)
T ss_dssp             HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred             HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence            4444557999999999764 233332233344444455678889999883

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.73  E-value=0.0024  Score=61.06  Aligned_cols=24  Identities=42%  Similarity=0.606  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.70  E-value=0.0053  Score=58.01  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ..+++|.|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            357999999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.69  E-value=0.006  Score=57.05  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.+++|.|++||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.68  E-value=0.005  Score=58.72  Aligned_cols=27  Identities=22%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|.+++|.|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.64  E-value=0.0052  Score=57.36  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998754

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.62  E-value=0.029  Score=54.80  Aligned_cols=53  Identities=25%  Similarity=0.290  Sum_probs=44.8

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhcccceeeec
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQ---------PSASLLNMADYLYVLT  243 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~  243 (612)
                      .+.+++++||----.|      +.+.++.+++.|+.||++-++         +...+..++|.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999877654      666666677789999999999         8888999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.61  E-value=0.0049  Score=61.73  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|||||||++.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999974

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.59  E-value=0.0088  Score=54.08  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            368999999999999999988643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.59  E-value=0.0058  Score=57.02  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++|+|++|||||||++.|+..++
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3789999999999999999988654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.55  E-value=0.021  Score=51.27  Aligned_cols=42  Identities=5%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      +..++++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA  116 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence            45789999975 6788888888888877544456677777654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.55  E-value=0.011  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.54  E-value=0.011  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.53  E-value=0.023  Score=71.19  Aligned_cols=76  Identities=17%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCch------
Q psy12625        176 RLSIALELL--SNPSIIFLDEPTTGLD-Y------------LNATNLVKLLRDM---AH-QGTMIICTLHQPSA------  230 (612)
Q Consensus       176 Rv~ia~aL~--~~p~illlDEPtsgLD-~------------~~~~~i~~~l~~l---~~-~g~tvi~~~H~~~~------  230 (612)
                      -+.+++.++  .+|++++.|.-++-.. +            ..+..+.+.|++|   ++ .+.+||++.|-...      
T Consensus       449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g  528 (2050)
T 3cmu_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence            345555554  4799999999876552 1            1233455666666   44 68899998774211      


Q ss_pred             ---------HHHhcccceeeecCCeEEEec
Q psy12625        231 ---------SLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       231 ---------~i~~~~D~v~~L~~G~iv~~G  251 (612)
                               .+.+.+|-++.|+.......|
T Consensus       529 ~p~~psGg~ale~~ADv~l~L~R~~~~~~g  558 (2050)
T 3cmu_A          529 NPETTTGGNALKFYASVRLDIRRIGAVKEG  558 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred             CCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence                     356778999988765543333

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.53  E-value=0.011  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.50  E-value=0.0086  Score=54.09  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.46  E-value=0.0078  Score=58.01  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|-.+.|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.46  E-value=0.0054  Score=57.72  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.2

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +++.+++|.|++||||||+.+.|+..
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.45  E-value=0.01  Score=53.72  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.40  E-value=0.01  Score=53.55  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.38  E-value=0.0058  Score=56.76  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=18.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998644

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.0072  Score=56.41  Aligned_cols=24  Identities=42%  Similarity=0.587  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.33  E-value=0.0076  Score=57.12  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78999999999999999998853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.32  E-value=0.0086  Score=54.56  Aligned_cols=23  Identities=43%  Similarity=0.693  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.016  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKGT   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999853

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.32  E-value=0.011  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            37899999999999999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.29  E-value=0.015  Score=53.70  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.|.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.28  E-value=0.0083  Score=58.19  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=21.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++.+++|.|++||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.24  E-value=0.017  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999888653

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.21  E-value=0.012  Score=60.27  Aligned_cols=37  Identities=22%  Similarity=0.078  Sum_probs=31.9

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus       131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            345788887777 8899999999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.21  E-value=0.011  Score=56.16  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+-+++|.|++||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3557999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.20  E-value=0.011  Score=54.01  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.20  E-value=0.0097  Score=56.98  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|.||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.20  E-value=0.012  Score=53.72  Aligned_cols=23  Identities=39%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.20  E-value=0.0099  Score=53.91  Aligned_cols=22  Identities=32%  Similarity=0.658  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||++.+.+..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            6899999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.18  E-value=0.013  Score=53.12  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999999753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.17  E-value=0.0089  Score=53.65  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.15  E-value=0.011  Score=54.22  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|.|++||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.15  E-value=0.01  Score=59.59  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.15  E-value=0.013  Score=53.63  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.13  E-value=0.011  Score=55.29  Aligned_cols=23  Identities=39%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998744

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.12  E-value=0.025  Score=66.15  Aligned_cols=25  Identities=40%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.|.||+|+|||+|.+.|+....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.10  E-value=0.013  Score=53.63  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.10  E-value=0.011  Score=55.95  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ..+++|.|++||||||+.+.|+..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.10  E-value=0.0096  Score=54.66  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+++|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.06  E-value=0.0087  Score=55.61  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|+|++|+|||||++.+.+.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.05  E-value=0.0089  Score=57.70  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..+.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998643

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.05  E-value=0.012  Score=56.51  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|.||+||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.04  E-value=0.013  Score=58.35  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.03  E-value=0.013  Score=53.48  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.-.++|+|++|+|||||++.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34468999999999999999998853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.02  E-value=0.013  Score=53.63  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.02  E-value=0.019  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            47899999999999999999754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.02  E-value=0.022  Score=53.78  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.00  E-value=0.0099  Score=55.39  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+++|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.99  E-value=0.019  Score=53.87  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.98  E-value=0.0094  Score=53.94  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            37899999999999999999754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.97  E-value=0.012  Score=54.75  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.+++|.|++||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.97  E-value=0.01  Score=55.40  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.97  E-value=0.017  Score=52.12  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.94  E-value=0.016  Score=53.98  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.90  E-value=0.011  Score=54.93  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            58899999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.89  E-value=0.014  Score=57.42  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++-.++|.||+||||||+.+.|+..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999853

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.88  E-value=0.022  Score=52.43  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            46899999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.86  E-value=0.017  Score=53.39  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.85  E-value=0.024  Score=54.24  Aligned_cols=36  Identities=19%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ...++..-.. ..|..++|+||+|+|||||...|+..
T Consensus        22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4456665544 47889999999999999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.85  E-value=0.012  Score=54.58  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||++.+.+..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.84  E-value=0.014  Score=53.41  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            37899999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.83  E-value=0.018  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.79  E-value=0.013  Score=53.16  Aligned_cols=23  Identities=39%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999997743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.78  E-value=0.024  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++++|++|+|||||++.+++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=94.78  E-value=0.019  Score=60.17  Aligned_cols=41  Identities=24%  Similarity=0.343  Sum_probs=28.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCC-----C-CCCCCceeEEEECC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRR-----P-KKTETNSGYIEINE   96 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~-----p-~~~~~~~G~I~~~g   96 (612)
                      |-.++|+|.+|+|||||+|.|+|-..     | ....+..|.+.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998431     0 01123567777765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.77  E-value=0.019  Score=53.46  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999999854

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.75  E-value=0.02  Score=52.83  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.+...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~~   35 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKKF   35 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.74  E-value=0.023  Score=52.69  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998854

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.73  E-value=0.014  Score=52.65  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.72  E-value=0.015  Score=57.33  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -+++|.|++||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.72  E-value=0.017  Score=52.63  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.70  E-value=0.016  Score=55.03  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ..+++|.|++||||||+.+.|+..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.70  E-value=0.24  Score=53.14  Aligned_cols=27  Identities=33%  Similarity=0.509  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999987654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.70  E-value=0.026  Score=58.41  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++.++.|+||+|||||||...|+..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            567999999999999999999998653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.69  E-value=0.029  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.69  E-value=0.0085  Score=63.34  Aligned_cols=45  Identities=11%  Similarity=0.076  Sum_probs=38.3

Q ss_pred             CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        186 NPSIIFLDEPTTGLD---YLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       186 ~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      .|.++++||-=.=++   +..+..+.+.+++.++.|..++++||.+.+
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d  309 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID  309 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence            588999999988774   677888888888888889999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.68  E-value=0.016  Score=59.11  Aligned_cols=26  Identities=35%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.| .++|+|++|+|||||+|.|.|..
T Consensus         6 ~~g-~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            6 YSG-FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence            344 58999999999999999999964

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.68  E-value=0.021  Score=52.34  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.67  E-value=0.024  Score=52.08  Aligned_cols=22  Identities=27%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.67  E-value=0.0092  Score=54.98  Aligned_cols=23  Identities=39%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .--++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            44689999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.62  E-value=0.025  Score=53.25  Aligned_cols=25  Identities=32%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      =-++|+|++|+|||||++.+.+...
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~~   49 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGEF   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC
Confidence            3578999999999999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.62  E-value=0.028  Score=52.43  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.+...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~~   48 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGEI   48 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.60  E-value=0.015  Score=53.25  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.59  E-value=0.021  Score=53.35  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.59  E-value=0.023  Score=52.84  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999999854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.58  E-value=0.019  Score=52.74  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+..+.|.||+|+|||||++.++...
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999998754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.58  E-value=0.023  Score=53.39  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.57  E-value=0.015  Score=57.84  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|||||||+|.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999963

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.57  E-value=0.018  Score=53.53  Aligned_cols=24  Identities=33%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            468999999999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.57  E-value=0.014  Score=58.55  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||+|.|.|..
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998854

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.54  E-value=0.023  Score=52.78  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.54  E-value=0.019  Score=55.66  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +++|.|++||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999853

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.52  E-value=0.018  Score=58.79  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||+|.|.|..
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            78999999999999999999964

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.50  E-value=0.02  Score=55.59  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++..++.|+||+||||+|..+.|+-.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456678999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.49  E-value=0.03  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++++|++|+|||||++.+.+-.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.49  E-value=0.014  Score=55.05  Aligned_cols=22  Identities=32%  Similarity=0.604  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.49  E-value=0.018  Score=53.30  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.=-++++|++|+|||||++.+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44468999999999999999999854

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.46  E-value=0.016  Score=55.19  Aligned_cols=23  Identities=43%  Similarity=0.619  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|.+..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.46  E-value=0.0099  Score=60.38  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++-+++|.||+||||||+.+.|+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3558999999999999999999863

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.45  E-value=0.019  Score=55.31  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      |-.+.|+|++||||||+.+.|+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.43  E-value=0.031  Score=52.46  Aligned_cols=23  Identities=35%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.40  E-value=0.0053  Score=58.81  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=29.9

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      .+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~  167 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence            3578999999765 7877777766666432 23567888887754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.40  E-value=0.043  Score=51.67  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999999854

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.39  E-value=0.027  Score=51.70  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.39  E-value=0.017  Score=56.46  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +..+|.++.|.|++||||||+.+.|+..+.
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.38  E-value=0.03  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCC
Confidence            47899999999999999998743

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.37  E-value=0.017  Score=60.77  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||+|.|++..
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.36  E-value=0.035  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            57899999999999999998753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.35  E-value=0.024  Score=54.74  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=24.4

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -+|.+++|.|++||||||+.+.|+..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.35  E-value=0.02  Score=56.89  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999853

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.35  E-value=0.048  Score=52.44  Aligned_cols=22  Identities=41%  Similarity=0.727  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999974

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.34  E-value=0.019  Score=57.90  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ..+++|.|++||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999983

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.33  E-value=0.018  Score=56.82  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|.|..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.33  E-value=0.022  Score=52.17  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.29  E-value=0.037  Score=51.52  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC
Confidence            57899999999999999888754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.26  E-value=0.02  Score=53.59  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.26  E-value=0.029  Score=52.13  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.26  E-value=0.031  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.25  E-value=0.024  Score=57.27  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.22  E-value=0.02  Score=57.44  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|||||||+|.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999863

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.21  E-value=0.032  Score=51.90  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.21  E-value=0.02  Score=53.76  Aligned_cols=22  Identities=41%  Similarity=0.727  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999873

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.20  E-value=0.022  Score=54.62  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.17  E-value=0.026  Score=54.91  Aligned_cols=26  Identities=35%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.16  E-value=0.035  Score=52.76  Aligned_cols=24  Identities=38%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.+...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~~   53 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDCF   53 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999998643

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.12  E-value=0.021  Score=58.04  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999974

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.11  E-value=0.013  Score=56.15  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++.|.|..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            367999999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.11  E-value=0.023  Score=54.85  Aligned_cols=23  Identities=17%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -.++|+|++|+|||||++.+.+.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999874

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.10  E-value=0.023  Score=53.65  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.10  E-value=0.023  Score=52.74  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      =-++|+|++|+|||||++.+.+-
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999964

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.09  E-value=0.021  Score=54.58  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++.|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.05  E-value=0.018  Score=53.63  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.05  E-value=0.024  Score=52.87  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++.+.+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999999854

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.02  E-value=0.025  Score=60.46  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+.+++.|+|++||||||+.+.|+..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999999763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.02  E-value=0.027  Score=53.55  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999999854

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.00  E-value=0.035  Score=52.04  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      =-++|+|++|+|||||++.+.+..
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            358899999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.00  E-value=0.021  Score=53.25  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47899999999999999999854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.98  E-value=0.024  Score=52.09  Aligned_cols=28  Identities=32%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+..+.|.||+|+|||||++.++....
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456778999999999999999987643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.97  E-value=0.022  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999975

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.97  E-value=0.024  Score=53.57  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      =-++|+|++|+|||||++.+.+..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.96  E-value=0.027  Score=55.34  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=24.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.+++|.|++||||||+.+.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999987654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.95  E-value=0.032  Score=57.12  Aligned_cols=25  Identities=40%  Similarity=0.527  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+++|+||+|||||||...|+-..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4588999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.95  E-value=0.025  Score=53.21  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      =-++|+|++|+|||||++.+.+..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            367899999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.91  E-value=0.028  Score=58.21  Aligned_cols=24  Identities=46%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+++|.||+|||||||.+.|+...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            479999999999999999999754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=93.88  E-value=0.037  Score=52.80  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~~   58 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADGA   58 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999999753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.87  E-value=0.14  Score=64.20  Aligned_cols=36  Identities=28%  Similarity=0.234  Sum_probs=31.2

Q ss_pred             cccccceE--EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         43 KDILKDIS--GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        43 ~~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ...|+++.  +-+++|+.+.|.||+|+|||||...++-
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44678888  5799999999999999999999988763

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.86  E-value=0.038  Score=53.60  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             hCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q psy12625        185 SNPSIIFLDEPTT----GLDYLNATNLVKLLRDMAH-QGTMIICTLHQP  228 (612)
Q Consensus       185 ~~p~illlDEPts----gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~  228 (612)
                      .+|+++++|--+.    .-|.....+++..|+.+++ .|.+++++.|..
T Consensus       134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~  182 (251)
T 2zts_A          134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP  182 (251)
T ss_dssp             TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence            4788888885432    1144556677788888876 689999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.84  E-value=0.032  Score=53.64  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++.|+||+||||+|..+.|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.057  Score=51.76  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.77  E-value=0.025  Score=56.85  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|.+|+|||||++.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999964

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.75  E-value=0.025  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999999854

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.72  E-value=0.032  Score=54.10  Aligned_cols=28  Identities=29%  Similarity=0.246  Sum_probs=25.4

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|.++.+-|++||||||+.+.|+..+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3689999999999999999999998765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.72  E-value=0.037  Score=53.87  Aligned_cols=28  Identities=32%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+|.++++.|++||||||+.+.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987553

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.69  E-value=0.02  Score=52.67  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=9.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.69  E-value=0.034  Score=53.74  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.++.+-|++||||||+.+.|+..+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=93.65  E-value=0.031  Score=52.43  Aligned_cols=24  Identities=17%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -++|+|++|+|||||++.+.+...
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999998644

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.64  E-value=0.067  Score=58.10  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=52.7

Q ss_pred             cCCCChhhhhHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        166 TKHLSGGQKKRLSIALELL--S---------------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL~--~---------------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      .+++||||+|-.-+|.+..  .               .-.++++||. +-+|.......+++++++   |.-+|+++-+ 
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-  451 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-  451 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence            4579999999654444332  2               1257999999 999999999999999875   6777777755 


Q ss_pred             chHHHhcccceeeec
Q psy12625        229 SASLLNMADYLYVLT  243 (612)
Q Consensus       229 ~~~i~~~~D~v~~L~  243 (612)
                        .+....|.++.+-
T Consensus       452 --~i~p~v~~~~~~~  464 (483)
T 3euj_A          452 --NISPERGTTYKLV  464 (483)
T ss_dssp             --SCCCSSSEEEECC
T ss_pred             --hhhhccCceEEEE
Confidence              3456678877775

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.64  E-value=0.03  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.64  E-value=0.027  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      =-++|+|++|+|||||++.+.+-
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.63  E-value=0.036  Score=59.82  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            55555 466789999999999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.63  E-value=0.036  Score=54.15  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.+++|-|+.||||||+.+.|+..++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999997653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.58  E-value=0.033  Score=53.34  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+++|.|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578999999999999999998753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.56  E-value=0.026  Score=55.98  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=24.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++.+++|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5788999999999999999999987653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.56  E-value=0.037  Score=56.99  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+++|+||+|||||||.+.|+...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.55  E-value=0.058  Score=50.31  Aligned_cols=35  Identities=23%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +..++..-. --.|.-++|.|+||+|||||...|..
T Consensus         4 ~~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFL-VIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            344555444 45788999999999999999888865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.51  E-value=0.054  Score=51.19  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      =-++++|++|+|||||++.+.+.
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            36789999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.50  E-value=0.044  Score=51.03  Aligned_cols=23  Identities=35%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=93.46  E-value=0.034  Score=55.25  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||++.|.|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=93.40  E-value=0.056  Score=51.60  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=93.39  E-value=0.02  Score=54.64  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.37  E-value=0.035  Score=55.36  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++++|++|+|||||+|.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.27  E-value=0.11  Score=59.89  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.+.||+|+|||+|.++|+...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.16  E-value=0.051  Score=55.49  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+++|+||+|||||||...|+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3578999999999999999998754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.13  E-value=0.012  Score=58.35  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=22.8

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +....+|  +.|.||+|+|||||+++|++..
T Consensus        40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence            3334444  7799999999999999999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=93.08  E-value=0.041  Score=54.89  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -.++++|.+|+|||||+|.|.|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            4789999999999999999999754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.07  E-value=0.053  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.04  E-value=0.028  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++++|++|+|||||++.+.+-
T Consensus        24 ~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.03  E-value=0.04  Score=52.77  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++|+|++|+|||||++-+++..
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999988643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.02  E-value=0.021  Score=53.65  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=4.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=92.96  E-value=0.04  Score=52.00  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            47899999999999999998753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=92.85  E-value=0.13  Score=59.04  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.+.||+|+|||+|.+.|+...
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            68899999999999999999754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=92.80  E-value=0.057  Score=50.78  Aligned_cols=53  Identities=23%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc---------hHHHhcccceeeec
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS---------ASLLNMADYLYVLT  243 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~  243 (612)
                      +++++++||--- +|+    .+++.|+.++++|..|+++.++.+         ..+...+|.+.-|+
T Consensus        76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            578999999743 443    366777777778999999888433         44556677776664

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=92.77  E-value=0.055  Score=57.29  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+++|+||+|||||||.+.|+...
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3578999999999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.74  E-value=0.044  Score=59.16  Aligned_cols=53  Identities=9%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             hhhhHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        172 GQKKRLSIALELLSNPSIIFLDEPT-TGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       172 GerqRv~ia~aL~~~p~illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      .|++....+...+.+++++++.... .++.... ..+.+.++   +.++.+|++.+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~  141 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL  141 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence            4666666777777788877665444 4555544 44555543   4567777776654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=92.70  E-value=0.051  Score=48.67  Aligned_cols=42  Identities=19%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      +..+|++||.- .|++..+..+.+.|... ..+..+|++++.+.
T Consensus        76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~  117 (145)
T 3n70_A           76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL  117 (145)
T ss_dssp             TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred             CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence            45789999984 68888888888888332 23456777777654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=92.39  E-value=0.066  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      --++|+||+||||||+.+.|+..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            35799999999999999999764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.39  E-value=0.066  Score=50.34  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQP  228 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~  228 (612)
                      .++.++++||. ..++......+.+.+.+. ..+..+|++++.+
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~  142 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV  142 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence            36889999995 456777777776666553 2345667777654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=92.26  E-value=0.073  Score=57.81  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      |=.++|+|++|+|||||+|.|+|..
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4448999999999999999999863

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=92.07  E-value=0.079  Score=52.60  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+..-+.|.||+|+|||||.+.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45567889999999999999999875

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=91.90  E-value=0.11  Score=49.55  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCC
Q psy12625        174 KKRLSIALELL--SNPSIIFLDEPTT--GLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEG  245 (612)
Q Consensus       174 rqRv~ia~aL~--~~p~illlDEPts--gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G  245 (612)
                      ++.+.-++..+  .+.++++|||.+.  .++.....++++.|.+ +-++..||+|.+.+..++.+.+|-|--|..-
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v  180 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPV  180 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence            45666677777  5679999999976  3444445567777753 2257899999999999999999999999764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=91.82  E-value=0.084  Score=54.95  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..-.++|+|++|+|||||++.|++..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=91.79  E-value=0.091  Score=53.47  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +--++|+|++|+|||||++.+.+.
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345789999999999999998876

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=91.78  E-value=0.089  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +-.++++|.+|+|||||+|.|.|...
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCce
Confidence            34689999999999999999999653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.74  E-value=0.12  Score=53.85  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=22.8

Q ss_pred             CCChhhhhHHHHHHHH---hh--CCCEEEEeCCC
Q psy12625        168 HLSGGQKKRLSIALEL---LS--NPSIIFLDEPT  196 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL---~~--~p~illlDEPt  196 (612)
                      .+|+||+||..++++|   ..  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            5899999999999999   77  89999999997

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=91.72  E-value=0.057  Score=56.15  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|.+|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999964

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.70  E-value=0.076  Score=53.69  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=22.2

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++...+.|.||+|+|||+|.++|+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334567788999999999999999754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=91.64  E-value=0.078  Score=56.21  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=31.2

Q ss_pred             HHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEE
Q psy12625        147 SKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFL  192 (612)
Q Consensus       147 ~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illl  192 (612)
                      +.++++++.++....    ..++|.+|.+++.-..-+...|-++++
T Consensus       180 ~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          180 NDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            356777777776543    347899998888777767778988887

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=91.62  E-value=0.086  Score=54.57  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+|..+.|.||+|+|||||.+.++....
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999999998654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=90.88  E-value=0.034  Score=52.40  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+-
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            5789999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.53  E-value=0.098  Score=53.51  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=23.1

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+..-+.|.||+|+|||+|.++++...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            455678999999999999999998753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=91.39  E-value=0.16  Score=53.40  Aligned_cols=42  Identities=24%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCCCC------CCCCceeEEEECCEec
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRRPK------KTETNSGYIEINETRL   99 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~p~------~~~~~~G~I~~~g~~~   99 (612)
                      -++|+|.+-+|||||+|.|+|-...-      ...+..|.+.++|.++
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i  121 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI  121 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence            58999999999999999999964210      1123568888888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	612
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-35
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-32
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-32
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-32
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-31
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-29
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	5e-29
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-29
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-28
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-28
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-27
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-27
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	4e-27
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-26
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-26
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-25
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-24
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-23
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-22
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-21
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-09
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	7e-09
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-08

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  129 bits (327), Expect = 9e-35
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 21/242 (8%)

Query: 15  PRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLD 74
             K   +    +S+         Y+     ILKDI+      E    +G SG GK+ L++
Sbjct: 11  EIKQGRIDIDHVSFQ--------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 62

Query: 75  ILAGYRRPKKTETNSGYIEINETRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAA 132
           ++  +         SG I I+   ++D     LR +   + QDN+L    TV+E++ +  
Sbjct: 63  LIPRFYDV-----TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR 116

Query: 133 HLKLGNQYSRKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSII 190
                 +    AK +       +L     T        LSGGQK+RLSIA   L+NP I+
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176

Query: 191 FLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQ 250
            LDE T+ LD  + + + + L  ++   T +I   H+ S   +  AD + V+  G+    
Sbjct: 177 ILDEATSALDLESESIIQEALDVLSKDRTTLIVA-HRLST--ITHADKIVVIENGHIVET 233

Query: 251 GT 252
           GT
Sbjct: 234 GT 235

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  123 bits (309), Expect = 1e-32
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 17/229 (7%)

Query: 35  THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           T +Y +  + I  LK+++      E   I+GPSGSGK+ +L+I+    +P       G +
Sbjct: 8   TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----TEGEV 62

Query: 93  EINETRLQD------HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKE 146
            I+  +  D       ++ R +  ++ Q   L  LLT  E++ +    K     S + + 
Sbjct: 63  YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122

Query: 147 SKVDSIADSLSIS-TCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNAT 205
            +         +     N     LSGGQ++R++IA  L +NP II  D+PT  LD     
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182

Query: 206 NLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            +++LL+ +  + G  ++   H    ++    + +  L +G    +  +
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  123 bits (310), Expect = 2e-32
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 19/221 (8%)

Query: 45  ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN---ETRLQD 101
            L  +S      ++++I+GP+GSGK+ L++++ G+ +      + G +       T  + 
Sbjct: 19  ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDITNKEP 73

Query: 102 HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY----------SRKAKESKVDS 151
             +         Q     + +TV E+L +       +              +    K   
Sbjct: 74  AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 133

Query: 152 IADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLL 211
           I + L +S   +     LSGGQ K + I   L++NP +I +DEP  G+    A ++   +
Sbjct: 134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193

Query: 212 RDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            ++  +G   +   H+    +LN  D+LYV+  G    +G 
Sbjct: 194 LELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGR 233

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  121 bits (305), Expect = 8e-32
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 12/219 (5%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           +    +   +  ++      E  V+LGPSG GKT  L ++AG   P       G I   +
Sbjct: 13  TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----TEGRIYFGD 67

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
             +       +    + Q   +   +TV E++     +K   ++ +   + +V   A+ L
Sbjct: 68  RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELL 124

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            I    N     LSGGQ++R+++A  ++  P ++ +DEP + LD      +   ++ +  
Sbjct: 125 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184

Query: 217 QG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           +   T I  T  Q  A  + M D + V+  G     G+ 
Sbjct: 185 KLKVTTIYVTHDQVEA--MTMGDRIAVMNRGQLLQIGSP 221

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  121 bits (304), Expect = 1e-31
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 8/220 (3%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           T +Y  +    L++I+    + +   ++G SGSGK+ +  ++  +    +        ++
Sbjct: 20  TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 79

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
            E  L     LR +   + Q+  L                    Q    A+ +      +
Sbjct: 80  REYTLAS---LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 136

Query: 155 SLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLR 212
            +   + T        LSGGQ++R++IA  LL +  I+ LDE T+ LD  +   +   L 
Sbjct: 137 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 196

Query: 213 DMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           ++    T ++   H+ S   +  AD + V+ +G    +GT
Sbjct: 197 ELQKNRTSLVIA-HRLST--IEQADEIVVVEDGIIVERGT 233

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (285), Expect = 3e-29
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEIN- 95
              I  K+ILK IS      E+  ++GP+G+GKT  L I++   +P     +SG + +  
Sbjct: 9   RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFG 63

Query: 96  ETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
           +  +++   +RK   Y+ ++      +   E L   A        S    E  V+   + 
Sbjct: 64  KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEI 120

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
             +           S G  ++L IA  L+ NP +  LDEPT+GLD LNA  + K+L+  +
Sbjct: 121 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 216 HQG-TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            +G T+++ + +        + D + ++  G     GTV
Sbjct: 181 QEGLTILVSSHNMLEV--EFLCDRIALIHNGTIVETGTV 217

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 12  KKSPRKHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTK 71
           + +  +  +    ++S+S L             +LK+I+      E+  I G +GSGKT 
Sbjct: 25  QSNGDRKHSSDENNVSFSHLCLV-------GNPVLKNINLNIEKGEMLAITGSTGSGKTS 77

Query: 72  LLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVA 131
           LL ++ G         + G I+         R+      +  Q + +          T+ 
Sbjct: 78  LLMLILGELEA-----SEGIIKH------SGRV-----SFCSQFSWIM-------PGTIK 114

Query: 132 AHLKLGNQYSRKAKESKVDSIADSLSIS-------TCKNTLTKHLSGGQKKRLSIALELL 184
            ++  G  Y     +S V +      I+       T        LSGGQ+ R+S+A  + 
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174

Query: 185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE 244
            +  +  LD P   LD      + +            I    +     L  AD + +L +
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH--LRKADKILILHQ 232

Query: 245 GYCTYQGT 252
           G   + GT
Sbjct: 233 GSSYFYGT 240

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (282), Expect = 7e-29
 Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 22/242 (9%)

Query: 35  THSYSIKSKDI--LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYI 92
           T  +   ++ I  L ++S    + ++  ++G SG+GK+ L+  +    RP       G +
Sbjct: 8   TKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TEGSV 62

Query: 93  EINETRL-----QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKES 147
            ++   L      +    R++   I Q   L    TV  ++ +   L       +   + 
Sbjct: 63  LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKR 119

Query: 148 KVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNL 207
           +V  +   + +    ++   +LSGGQK+R++IA  L SNP ++  DE T+ LD     ++
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179

Query: 208 VKLLRDMA-HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV-----PYLS 261
           ++LL+D+    G  I+   H+    +  + D + V++ G    Q TV  +      P   
Sbjct: 180 LELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238

Query: 262 DF 263
            F
Sbjct: 239 KF 240

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  111 bits (278), Expect = 1e-28
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 43  KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDH 102
           K +L+ I+       +    GP+G GKT LL  ++ Y +P K E     I  N       
Sbjct: 14  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-----IIYNG---VPI 65

Query: 103 RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCK 162
             ++ +  ++ ++ ++   ++VE+ L   A L     Y  K  ++++    +S+ +   K
Sbjct: 66  TKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLK 120

Query: 163 NTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMI 221
             L   LS G  +R+ +A  LL N  I  LD+P   +D  +   ++K + ++  + G +I
Sbjct: 121 KKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179

Query: 222 ICTLHQPSASLLNMADYLYVL 242
           I +  +     L+  D    L
Sbjct: 180 ISSREE-----LSYCDVNENL 195

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (277), Expect = 4e-28
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 21/234 (8%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           F++I +         Y   S  IL +I+      E+  I+G SGSGK+ L  ++  +  P
Sbjct: 4   FRNIRFR--------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 55

Query: 83  KKTETNSGYIEINETRLQ--DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
           +  +     + I+   L   D   LR++   ++QDN+L    ++ +++++A       + 
Sbjct: 56  ENGQ-----VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKV 109

Query: 141 SRKAKESKVDSIADSL--SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
              AK +        L    +T        LSGGQ++R++IA  L++NP I+  DE T+ 
Sbjct: 110 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169

Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           LDY +   +++ +  +    T+II   H+ S   +  AD + V+ +G    QG 
Sbjct: 170 LDYESEHVIMRNMHKICKGRTVIIIA-HRLST--VKNADRIIVMEKGKIVEQGK 220

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  109 bits (273), Expect = 1e-27
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 10/218 (4%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
           + +     + KDI+      E  V +GPSG GK+ LL ++AG       +     + I E
Sbjct: 7   TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-----LFIGE 61

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
            R+ D     +    + Q   L   L+V E+++    L       ++    +V+ +A+ L
Sbjct: 62  KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVL 118

Query: 157 SISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH 216
            ++   +   K LSGGQ++R++I   L++ PS+  LDEP + LD      +   +  +  
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178

Query: 217 Q-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           + G  +I   H      + +AD + VL  G     G  
Sbjct: 179 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKP 215

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  108 bits (270), Expect = 4e-27
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 8/217 (3%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
                +   +K I       ++  ++G +G+GKT  L  +AG  R +K +      +I  
Sbjct: 13  HVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT- 71

Query: 97  TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL 156
                H + R     + +   +   LTV E+L + A+ +      ++  +  ++ I    
Sbjct: 72  -NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLF 126

Query: 157 S-ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
             +      L   LSGG+++ L+I   L+S P ++ +DEP+ GL  +  + + ++++ + 
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186

Query: 216 HQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
            +GT I+          L +A Y YVL  G    +G 
Sbjct: 187 QEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGK 222

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  108 bits (270), Expect = 4e-27
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 21/234 (8%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
            + + ++   YD       S+ IL+DIS       +    GPSG GK+ +  +L  + +P
Sbjct: 4   ARHVDFA---YD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP 54

Query: 83  KKTETNSGYIEINETRLQDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
                 +G I I+   + +  +   R +  ++ QD+ +      E               
Sbjct: 55  -----TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDL 109

Query: 141 SRKAKESKVDSIADS--LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
            +    +   S  ++    ++T        +SGGQ++RL+IA   L NP I+ LDE T  
Sbjct: 110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169

Query: 199 LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           LD  + + + K L  +    T ++   H+ S   +  AD +Y + +G  T  G 
Sbjct: 170 LDSESESMVQKALDSLMKGRTTLVIA-HRLST--IVDADKIYFIEKGQITGSGK 220

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  107 bits (268), Expect = 1e-26
 Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 24/233 (10%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
                  ++LK +S    + ++  I+G SGSGK+  L  +    +P     + G I +N 
Sbjct: 9   HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNG 63

Query: 97  TRL---------------QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYS 141
             +                  R+LR     + Q   L   +TV E++  A    LG   S
Sbjct: 64  QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LS 121

Query: 142 RKAKESKVDSIADSLSIST-CKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD 200
           +     +       + I    +     HLSGGQ++R+SIA  L   P ++  DEPT+ LD
Sbjct: 122 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 181

Query: 201 YLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
                 ++++++ +A +G  ++   H+      +++ ++  L +G    +G  
Sbjct: 182 PELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDP 233

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (262), Expect = 3e-26
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 24/223 (10%)

Query: 40  IKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL 99
           +     L  +SG   + E+  ++GP+G+GK+ LL  +AG           G I+     L
Sbjct: 9   VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG------KGSIQFAGQPL 62

Query: 100 QDHRM--LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLS 157
           +      L     Y+ Q         V   LT+  H         K +   ++ +A +L+
Sbjct: 63  EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALA 114

Query: 158 ISTCKNTLTKHLSGGQKKRLSIALELLS-------NPSIIFLDEPTTGLDYLNATNLVKL 210
           +       T  LSGG+ +R+ +A  +L           ++ LDEP   LD    + L K+
Sbjct: 115 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174

Query: 211 LRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
           L  +  QG  I+ + H  +   L  A   ++L  G     G  
Sbjct: 175 LSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRR 216

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 1e-25
 Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 21/236 (8%)

Query: 23  FQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRP 82
           FQD+S++   Y           +L+ ++      E++ ++GP+GSGK+ +  +L    +P
Sbjct: 14  FQDVSFA---YPNR----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66

Query: 83  KKTETNSGYIEINETRLQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQY 140
              +     + ++   L  +  R L ++   + Q+  +      E             + 
Sbjct: 67  TGGQ-----LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEI 121

Query: 141 SRKAKESKVDSIADSLS--ISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTG 198
           +  A +S   S    L     T  +     LSGGQ++ +++A  L+  P ++ LD+ T+ 
Sbjct: 122 TAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 181

Query: 199 LDYLNATNLVKLLRDMAHQG--TMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT 252
           LD  +   + +LL +   +   ++++ T    S   +  AD++  L  G     GT
Sbjct: 182 LDANSQLQVEQLLYESPERYSRSVLLIT-QHLSL--VEQADHILFLEGGAIREGGT 234

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 37  SYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE 96
                    ++++S      E  ++LGPSG GKT  L ++AG   P + +   G   + +
Sbjct: 10  WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69

Query: 97  -TRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADS 155
             +        ++   + Q   L   +TV +++     L+   +  R+  + +V  +A+ 
Sbjct: 70  PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAEL 126

Query: 156 LSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMA 215
           L ++   N   + LSGGQ++R+++   ++  P +  +DEP + LD      +   L+ + 
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186

Query: 216 HQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            Q G   I   H      + M D + V+  G     G+ 
Sbjct: 187 RQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSP 224

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 96.3 bits (239), Expect = 4e-23
 Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 35  THSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEI 94
           +  +       L +++    + E   ILGPSG+GKT  + I+AG   P   E       +
Sbjct: 10  SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69

Query: 95  NETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIAD 154
                       ++   + Q   L   LT  E++          + S++    +V+ +A 
Sbjct: 70  ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAK 126

Query: 155 SLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM 214
            L I    N   + LSG Q++R+++A  L+ +PS++ LDEP + LD     +   L++++
Sbjct: 127 ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186

Query: 215 AHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV 253
             + G  ++   H P A +  +AD + VL +G     G  
Sbjct: 187 QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 92.4 bits (229), Expect = 8e-22
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 46  LKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRML 105
           L ++S    S E  VILGP+G+GKT  L+++AG+  P         I ++   + D    
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-----ILLDGKDVTDLSPE 70

Query: 106 RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTL 165
           + +  ++ Q+  L   + V+++L     +K      +     +V   A  L I    +  
Sbjct: 71  KHDIAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN 124

Query: 166 TKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICT 224
              LSGG+++R+++A  L++NP I+ LDEP + LD     N  ++L  +  +    ++  
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184

Query: 225 LHQPSASLLNMADYLYVLTEGYCTYQGTV 253
            H  +     MAD + V+ +G     G  
Sbjct: 185 THDQT-EARIMADRIAVVMDGKLIQVGKP 212

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 90.8 bits (225), Expect = 3e-21
 Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 12/201 (5%)

Query: 54  VSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIM 113
           + ++  V+LGP+G+GK+  L+++AG  +P     + G + +N   +      R+   ++ 
Sbjct: 22  MGRDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVP 76

Query: 114 QDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ 173
           QD  L   L+V  ++             R  ++ +V  +A+ L I+   +     LSGG+
Sbjct: 77  QDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131

Query: 174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASL 232
           ++R+++A  L+  P ++ LDEP + +D      L++ LR +  +    I+   H      
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EA 190

Query: 233 LNMADYLYVLTEGYCTYQGTV 253
             +AD + V+  G    +G +
Sbjct: 191 AMLADEVAVMLNGRIVEKGKL 211

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 17/187 (9%), Positives = 39/187 (20%), Gaps = 36/187 (19%)

Query: 60  VILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR-LQDHRMLRKESCYIMQDNLL 118
           +I G  G GKT L+  +      +     +      E R  +  +              +
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKR-----AIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58

Query: 119 QELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS 178
                      V ++                             N              +
Sbjct: 59  FSSKFFTSKKLVGSY---------------------------GVNVQYFEELAIPILERA 91

Query: 179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADY 238
                     +I +DE      + +      + + M      ++ T+         +   
Sbjct: 92  YREAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIRDV--HPLVKE 148

Query: 239 LYVLTEG 245
           +  L   
Sbjct: 149 IRRLPGA 155

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 167 KHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMII 222
           ++LSGG+K   ++AL              LDE    LD  N   +   +R   +     I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 223 CTLHQPSASLLNMADYLYVLT 243
               +   ++   +D L  + 
Sbjct: 391 VISLKN--TMFEKSDALVGVY 409

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	612
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.18
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.93
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.86
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.98
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.54
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.29
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.22
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.16
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.09
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.01
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.84
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.68
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.65
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.63
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.62
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.58
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.57
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.54
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.53
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.53
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.52
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.51
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.48
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.4
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.39
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.33
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.28
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.28
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.13
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.13
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.11
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.1
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.05
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.02
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.98
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.95
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.92
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.91
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.88
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.87
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.86
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.79
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.76
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.76
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.73
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.73
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.7
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.69
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.68
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.6
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.59
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.58
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.57
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.53
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.52
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.46
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.41
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.41
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.4
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.38
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.37
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.33
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.27
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.19
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.15
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.05
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.04
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.04
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.03
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.02
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.02
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.99
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.7
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.68
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.68
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.6
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.59
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.58
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.55
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.5
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.49
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.47
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.47
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.46
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.39
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.39
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.36
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.33
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.33
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.31
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.21
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.2
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.19
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.13
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.1
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.05
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.01
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.0
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.95
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.9
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.79
d1okkd2	207	GTPase domain of the signal recognition particle r	93.78
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.72
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.62
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.61
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.58
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.48
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.44
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.31
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.21
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.19
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.16
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.15
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.14
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.12
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.01
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.88
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.81
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.78
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.75
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.74
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.68
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.58
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.58
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.56
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.42
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.38
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.18
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.04
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.03
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.03
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.95
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.81
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.8
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.76
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.66
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.65
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.29
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.26
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.06
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.93
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.78
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.71
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.67
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	90.56
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.5
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.46
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.11
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.33
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.02
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.0
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.97
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.8
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.74
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	88.66
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.51
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.48
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.27
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	87.43
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.4
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	86.28
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.93
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.67
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.58
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	84.87
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	84.31
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.16
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.76
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.37
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	82.88
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	82.48
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.11
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.26
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.48

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.2e-58  Score=454.77  Aligned_cols=219  Identities=21%  Similarity=0.365  Sum_probs=197.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+++|     ++|+|.+||+++
T Consensus         6 ~I~v~nlsk~y----------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p-----~sG~I~i~g~~i   70 (239)
T d1v43a3           6 EVKLENLTKRF----------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----TEGRIYFGDRDV   70 (239)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEEEEEEEE----------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----CCCEEEEcceec
Confidence            58999999998          678899999999999999999999999999999999999987     699999999998


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+....++.+|||||++.+++.+||+||+.++...+   ..++++.+++++++++.+||++..|+++.+|||||||||+|
T Consensus        71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvai  147 (239)
T d1v43a3          71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAV  147 (239)
T ss_dssp             TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHH
T ss_pred             ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence            655555678999999999999999999999876554   46778888999999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLV  257 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  257 (612)
                      ||||+.+|++|+|||||+|||+.++.+++++|+++++ .|+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus       148 AraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         148 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999999999999999976 5999999999986 688999999999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-58  Score=454.23  Aligned_cols=219  Identities=26%  Similarity=0.402  Sum_probs=165.3

Q ss_pred             EEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEecc
Q psy12625         21 LLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQ  100 (612)
Q Consensus        21 l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~  100 (612)
                      |+++||+++|          +++++|+||||++++||+++|+||||||||||||+|+|+.+|     ++|+|.+||+++.
T Consensus         1 Iev~nv~k~y----------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p-----~sG~I~i~g~~i~   65 (232)
T d2awna2           1 VQLQNVTKAW----------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----TSGDLFIGEKRMN   65 (232)
T ss_dssp             EEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEESSSCCT
T ss_pred             CEEEEEEEEE----------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCCEEEECCEECC
Confidence            6899999998          678899999999999999999999999999999999999986     6999999999986


Q ss_pred             chHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHH
Q psy12625        101 DHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIA  180 (612)
Q Consensus       101 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia  180 (612)
                      +.+..++.+|||||++.+++.+||+||+.++...+   ..++++.+++++++++.+||++..|+++.+|||||||||+||
T Consensus        66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiA  142 (232)
T d2awna2          66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG  142 (232)
T ss_dssp             TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC---------------------CHH
T ss_pred             CCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHH
Confidence            65556788999999999999999999999987654   345667788999999999999999999999999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        181 LELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       181 ~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|++++.|+++++..
T Consensus       143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            999999999999999999999999999999999976 6999999999976 6899999999999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.2e-58  Score=453.60  Aligned_cols=222  Identities=24%  Similarity=0.375  Sum_probs=202.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|.        .++..+|+|||+++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++
T Consensus         3 ~i~v~nlsk~y~--------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p-----~~G~I~~~g~~i   69 (242)
T d1oxxk2           3 RIIVKNVSKVFK--------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----STGELYFDDRLV   69 (242)
T ss_dssp             CEEEEEEEEEEG--------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred             EEEEEeEEEEEC--------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC-----CCceEEECCEEe
Confidence            589999999982        3567899999999999999999999999999999999999986     699999999987


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ...|+.+|||||++.++|.+||+||+.++...+   ..++++.+++++++++.+||++..|+++++||||||
T Consensus        70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqk  146 (242)
T d1oxxk2          70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ  146 (242)
T ss_dssp             EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred             ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHH
Confidence            432     234678999999999999999999999986543   467788889999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|++++.|++
T Consensus       147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~  225 (242)
T d1oxxk2         147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP  225 (242)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred             hHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            999999999999999999999999999999999999999976 5999999999976 68899999999999999999999


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      +++..
T Consensus       226 ~el~~  230 (242)
T d1oxxk2         226 EDLYD  230 (242)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=3.4e-57  Score=448.18  Aligned_cols=220  Identities=23%  Similarity=0.406  Sum_probs=203.5

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+++|     ++|+|.++|+++
T Consensus         3 ~i~v~nl~k~y----------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p-----~sG~I~~~g~~i   67 (240)
T d1g2912           3 GVRLVDVWKVF----------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----SRGQIYIGDKLV   67 (240)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----SEEEEEETTEEE
T ss_pred             cEEEEeEEEEE----------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----CCCEEEECCEEe
Confidence            58999999998          678899999999999999999999999999999999999986     689999999987


Q ss_pred             cchH------hhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhh
Q psy12625        100 QDHR------MLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQ  173 (612)
Q Consensus       100 ~~~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe  173 (612)
                      .+.+      ..++.+|||+|++.++|.+||+||+.++..++   ..++++.+++++++++.+||++..|+++++|||||
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGq  144 (240)
T d1g2912          68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ  144 (240)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred             cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence            5421      23578999999999999999999999998765   45678888999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      ||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |+|||++|||+. ++.++||||++|++|++++.|+
T Consensus       145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~  223 (240)
T d1g2912         145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS  223 (240)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999875 999999999976 6889999999999999999999


Q ss_pred             ccChhh
Q psy12625        253 VPGLVP  258 (612)
Q Consensus       253 ~~~~~~  258 (612)
                      ++++..
T Consensus       224 ~~el~~  229 (240)
T d1g2912         224 PDEVYD  229 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-57  Score=448.93  Aligned_cols=223  Identities=23%  Similarity=0.361  Sum_probs=202.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|..      +.+..++|+||||++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++
T Consensus         1 mi~v~nlsk~y~~------~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p-----~sG~I~~~g~~i   69 (240)
T d3dhwc1           1 MIKLSNITKVFHQ------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----TEGSVLVDGQEL   69 (240)
T ss_dssp             CEEEEEEEEEEEC------SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEE
T ss_pred             CEEEEeEEEEeCC------CCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc-----cCCceEEcCeEe
Confidence            4899999999943      12234689999999999999999999999999999999999986     689999999997


Q ss_pred             cch-----HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhh
Q psy12625        100 QDH-----RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQK  174 (612)
Q Consensus       100 ~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer  174 (612)
                      ...     ..+|+.+|||||++.+++.+||+||+.++..+.   +.++++.+++++++++.+||++..|+++.+||||||
T Consensus        70 ~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~  146 (240)
T d3dhwc1          70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK  146 (240)
T ss_dssp             CTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHH
T ss_pred             eeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence            532     235678999999999999999999999987654   356677888999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        175 KRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQ-GTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       175 qRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      |||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||+. ++.++|||+++|++|++++.|++
T Consensus       147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~  225 (240)
T d3dhwc1         147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTV  225 (240)
T ss_dssp             HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEET
T ss_pred             HHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999875 999999999976 68899999999999999999999


Q ss_pred             cChh
Q psy12625        254 PGLV  257 (612)
Q Consensus       254 ~~~~  257 (612)
                      +++.
T Consensus       226 ~ei~  229 (240)
T d3dhwc1         226 SEVF  229 (240)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            9874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=3.3e-57  Score=444.77  Aligned_cols=216  Identities=26%  Similarity=0.393  Sum_probs=197.7

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++|||++|          ++ .+|+||||++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+++
T Consensus         1 mi~v~nlsk~y----------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p-----~sG~I~~~G~~i   64 (229)
T d3d31a2           1 MIEIESLSRKW----------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----DSGRILLDGKDV   64 (229)
T ss_dssp             CEEEEEEEEEC----------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----SEEEEEETTEEC
T ss_pred             CEEEEEEEEEe----------CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CCCEEEEccEec
Confidence            47899999987          33 489999999999999999999999999999999999986     699999999998


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .+.+..++.+|||||++.++|.+||+||+.++..++.   ..   .+++++++++.+||.+..|+++.+|||||||||+|
T Consensus        65 ~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvai  138 (229)
T d3d31a2          65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVAL  138 (229)
T ss_dssp             TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHH
T ss_pred             cccchhHhcceeeccccccCccccHHHHHHHHHhhcc---cc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhh
Confidence            7655557889999999999999999999999887652   22   24578999999999999999999999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      ||||+.+|++|||||||+|||+.++.++.+.|+++++ .|.|||++|||+. ++.++||||++|++|++++.|+++++.+
T Consensus       139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             hhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999999976 6999999999986 6899999999999999999999998753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.1e-55  Score=435.07  Aligned_cols=221  Identities=23%  Similarity=0.389  Sum_probs=196.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+++|..      +.....+|+||||++++||+++|+|||||||||||++|+|+.+|     ++|+|.++|+++
T Consensus         1 mI~i~nlsk~y~~------~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p-----~sG~I~~~g~~i   69 (230)
T d1l2ta_           1 MIKLKNVTKTYKM------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----TEGEVYIDNIKT   69 (230)
T ss_dssp             CEEEEEEEEEEEE------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             CEEEEeEEEEeCC------CCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC-----CcceeEECCEEc
Confidence            4799999999953      12234589999999999999999999999999999999999986     699999999997


Q ss_pred             cch--H---hh-ccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-ccCcccCCCChh
Q psy12625        100 QDH--R---ML-RKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-CKNTLTKHLSGG  172 (612)
Q Consensus       100 ~~~--~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgG  172 (612)
                      ...  +   .+ ++.+|||+|++.++|.+||+||+.++...+.....+.++..+++.++++.+||.+ .+++++.+||||
T Consensus        70 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGG  149 (230)
T d1l2ta_          70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGG  149 (230)
T ss_dssp             TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHH
T ss_pred             CcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHH
Confidence            542  2   22 4579999999999999999999999987754445667778889999999999976 589999999999


Q ss_pred             hhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEec
Q psy12625        173 QKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQG  251 (612)
Q Consensus       173 erqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G  251 (612)
                      |||||+|||||+.+|++|+|||||||||+.++.++++.|+++.+ .|+|||++|||++ . .++||||++|++|+++++|
T Consensus       150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g  227 (230)
T d1l2ta_         150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREE  227 (230)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEec
Confidence            99999999999999999999999999999999999999999976 5999999999974 4 4899999999999999998


Q ss_pred             Cc
Q psy12625        252 TV  253 (612)
Q Consensus       252 ~~  253 (612)
                      ++
T Consensus       228 ~~  229 (230)
T d1l2ta_         228 KL  229 (230)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-54  Score=429.67  Aligned_cols=221  Identities=26%  Similarity=0.369  Sum_probs=205.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+++
T Consensus         2 aI~v~nl~k~y----------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p-----~~G~i~i~G~~i   66 (238)
T d1vpla_           2 AVVVKDLRKRI----------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----SSGIVTVFGKNV   66 (238)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEET
T ss_pred             CEEEEeEEEEE----------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----CCCEEEECcEec
Confidence            37899999998          778999999999999999999999999999999999999986     699999999997


Q ss_pred             cch-HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHH
Q psy12625        100 QDH-RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLS  178 (612)
Q Consensus       100 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~  178 (612)
                      .+. ...++.+|||||++.+++++||.||+.+...+.   ..++.+.++.++++++.++|++..++++++||||||||++
T Consensus        67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~  143 (238)
T d1vpla_          67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL  143 (238)
T ss_dssp             TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH
T ss_pred             ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHH
Confidence            543 456889999999999999999999999987765   2456677788999999999999999999999999999999


Q ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        179 IALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       179 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |||||+++|++|||||||+|||+.++.++.+++++++++|+|||++|||++ ++..+||||++|++|++++.|+++++..
T Consensus       144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999999999999999999999986 6889999999999999999999999875


Q ss_pred             H
Q psy12625        259 Y  259 (612)
Q Consensus       259 ~  259 (612)
                      .
T Consensus       223 ~  223 (238)
T d1vpla_         223 R  223 (238)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2e-54  Score=434.55  Aligned_cols=221  Identities=24%  Similarity=0.357  Sum_probs=200.2

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+++
T Consensus         2 ~Lev~nl~k~y----------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p-----~~G~I~~~G~~i   66 (258)
T d1b0ua_           2 KLHVIDLHKRY----------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----SEGAIIVNGQNI   66 (258)
T ss_dssp             CEEEEEEEEEE----------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEEEEEEEE----------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC-----CCCCEEECCEEe
Confidence            48999999998          678899999999999999999999999999999999999986     699999999987


Q ss_pred             cch---------------HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccc-cC
Q psy12625        100 QDH---------------RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTC-KN  163 (612)
Q Consensus       100 ~~~---------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~  163 (612)
                      ...               ...++++|||||++.+++.+||.||+.++.....  ..++++.++++.++++.+||.+. .+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~  144 (258)
T d1b0ua_          67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQG  144 (258)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             ccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhc
Confidence            321               2356789999999999999999999998743322  35677788899999999999874 57


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      +++++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||++|||+. ++.++||||++|+
T Consensus       145 ~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~  223 (258)
T d1b0ua_         145 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH  223 (258)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEE
T ss_pred             cCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEE
Confidence            889999999999999999999999999999999999999999999999999999999999999986 6889999999999


Q ss_pred             CCeEEEecCccChhh
Q psy12625        244 EGYCTYQGTVPGLVP  258 (612)
Q Consensus       244 ~G~iv~~G~~~~~~~  258 (612)
                      +|++++.|+++++..
T Consensus       224 ~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         224 QGKIEEEGDPEQVFG  238 (258)
T ss_dssp             TTEEEEEECHHHHHH
T ss_pred             CCEEEEEcCHHHHHh
Confidence            999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.2e-54  Score=428.38  Aligned_cols=221  Identities=23%  Similarity=0.368  Sum_probs=197.3

Q ss_pred             ceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCE
Q psy12625         18 HFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINET   97 (612)
Q Consensus        18 ~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~   97 (612)
                      ...|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+.+|     ++|+|.++|+
T Consensus         4 d~~Lev~~l~k~y----------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p-----~~G~I~~~G~   68 (240)
T d1ji0a_           4 DIVLEVQSLHVYY----------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----QKGKIIFNGQ   68 (240)
T ss_dssp             SEEEEEEEEEEEE----------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTE
T ss_pred             ceEEEEeeEEEEE----------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEeccc
Confidence            3579999999998          678899999999999999999999999999999999999986     6999999999


Q ss_pred             eccch--Hh-hccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-CCccccCcccCCCChhh
Q psy12625         98 RLQDH--RM-LRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-SISTCKNTLTKHLSGGQ  173 (612)
Q Consensus        98 ~~~~~--~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGe  173 (612)
                      ++.+.  .. .|..++|+||+..+|+.+||+||+.+......    .++..++.++++++.+ ++++..++++++|||||
T Consensus        69 ~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~  144 (240)
T d1ji0a_          69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE  144 (240)
T ss_dssp             ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred             ccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHH
Confidence            98543  22 24569999999999999999999987654322    2334456677788877 78999999999999999


Q ss_pred             hhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCc
Q psy12625        174 KKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTV  253 (612)
Q Consensus       174 rqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~  253 (612)
                      ||||+|||||+.+|++|+|||||+|||+.++.++++.|++++++|+|||++|||.. ++.++|||+++|++|++++.|++
T Consensus       145 ~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~  223 (240)
T d1ji0a_         145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKA  223 (240)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999999999999999976 68899999999999999999999


Q ss_pred             cChhh
Q psy12625        254 PGLVP  258 (612)
Q Consensus       254 ~~~~~  258 (612)
                      +++.+
T Consensus       224 ~el~~  228 (240)
T d1ji0a_         224 SELLD  228 (240)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-53  Score=428.80  Aligned_cols=223  Identities=22%  Similarity=0.308  Sum_probs=199.0

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+++|          +++++|+||||++++||+++|+||||||||||+|+|+|+++|     ++|+|.++|+++
T Consensus         4 iL~v~nlsk~y----------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p-----~~G~I~~~g~~i   68 (254)
T d1g6ha_           4 ILRTENIVKYF----------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----DEGRVYFENKDI   68 (254)
T ss_dssp             EEEEEEEEEEE----------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEC
T ss_pred             eEEEEEEEEEE----------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC-----CCcEEEECCEec
Confidence            68999999988          678899999999999999999999999999999999999986     689999999998


Q ss_pred             cch---HhhccceEEEccCCCCCCCCCHHHHHHHHHHhcc----------CCCCCHHHHHHHHHHHHHHcCCccccCccc
Q psy12625        100 QDH---RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKL----------GNQYSRKAKESKVDSIADSLSISTCKNTLT  166 (612)
Q Consensus       100 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~  166 (612)
                      ...   ...++.++|+||++.+++.+||+||+.++...+.          .....+++..++++++++.+++.+..|+++
T Consensus        69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  148 (254)
T d1g6ha_          69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA  148 (254)
T ss_dssp             TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred             cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence            542   2245579999999999999999999988643211          111223455678899999999999999999


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      ++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||+++||.+ ++.++||||++|++|+
T Consensus       149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~  227 (254)
T d1g6ha_         149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ  227 (254)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred             hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCE
Confidence            999999999999999999999999999999999999999999999999989999999999987 6889999999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      +++.|+++|...
T Consensus       228 iv~~g~~~e~~~  239 (254)
T d1g6ha_         228 IIAEGRGEEEIK  239 (254)
T ss_dssp             EEEEEESHHHHH
T ss_pred             EEEEecHHHHhh
Confidence            999999987643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.4e-53  Score=420.81  Aligned_cols=204  Identities=24%  Similarity=0.408  Sum_probs=186.4

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      ++..+  |||+++. ||+++|+||||||||||+|+|+|+++|     ++|+|.+||+++.+....++.+|||||++.++|
T Consensus        12 g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p-----~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~   83 (240)
T d2onka1          12 GNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP-----DRGEVRLNGADITPLPPERRGIGFVPQDYALFP   83 (240)
T ss_dssp             TTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC-----SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCT
T ss_pred             CCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC-----CceEEEECCEECCcCCHHHcCceeeccchhhcc
Confidence            44444  8999995 689999999999999999999999987     699999999998765556788999999999999


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLD  200 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD  200 (612)
                      .+||+||+.|+.  +   ..++.+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|+|||||+|||
T Consensus        84 ~ltV~enl~~~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD  158 (240)
T d2onka1          84 HLSVYRNIAYGL--R---NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD  158 (240)
T ss_dssp             TSCHHHHHHTTC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred             cchhhHhhhhhh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCC
Confidence            999999999863  2   34667778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        201 YLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       201 ~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      +.++..+.+.|+++++ .|+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus       159 ~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         159 LKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            9999999999999977 5999999999976 6899999999999999999999998853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-51  Score=409.28  Aligned_cols=213  Identities=28%  Similarity=0.427  Sum_probs=179.1

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+|+|+        .+++.+|+||||+|++||.+||+||||||||||+++|+|+++|     .+|+|.+||+++
T Consensus         1 eI~~~nvsf~Y~--------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g~~i   67 (241)
T d2pmka1           1 DITFRNIRFRYK--------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----ENGQVLIDGHDL   67 (241)
T ss_dssp             EEEEEEEEEESS--------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEET
T ss_pred             CeEEEEEEEEeC--------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC-----CCCEEEECCEEe
Confidence            489999999873        3567799999999999999999999999999999999999986     689999999998


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCC-----------ccccCccc
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSI-----------STCKNTLT  166 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~~  166 (612)
                      .+  ...+|+.++||+|++.+|+ .||+||+.++..     ..+.+    ++.+.++..++           +...+...
T Consensus        68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g  137 (241)
T d2pmka1          68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQG  137 (241)
T ss_dssp             TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred             cccchhhhhceEEEEecccccCC-ccccccccccCc-----cccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCCC
Confidence            64  3567899999999998886 699999976421     12222    22223333222           23344455


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+|||||||||+|||||+.+|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ . .+.||||++|++|+
T Consensus       138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~  214 (241)
T d2pmka1         138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-T-VKNADRIIVMEKGK  214 (241)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-G-GTTSSEEEEEETTE
T ss_pred             CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH-H-HHhCCEEEEEECCE
Confidence            68999999999999999999999999999999999999999999999864 899999999986 3 47899999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      ++++|+++++.+
T Consensus       215 Iv~~G~~~ell~  226 (241)
T d2pmka1         215 IVEQGKHKELLS  226 (241)
T ss_dssp             EEEEECHHHHHH
T ss_pred             EEEECCHHHHHh
Confidence            999999998753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-51  Score=410.44  Aligned_cols=220  Identities=23%  Similarity=0.360  Sum_probs=185.9

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||+|+|+.       ..++.+|+||||+|++||++||+||||||||||+++|+|+++|     .+|+|.+||+++
T Consensus        11 ~I~~~nvsf~Y~~-------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p-----~~G~I~i~g~~i   78 (251)
T d1jj7a_          11 LVQFQDVSFAYPN-------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-----TGGQLLLDGKPL   78 (251)
T ss_dssp             CEEEEEEEECCTT-------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEG
T ss_pred             eEEEEEEEEECCC-------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-----CcCEEEECCEec
Confidence            5999999998832       1346799999999999999999999999999999999999987     689999999998


Q ss_pred             cc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHH-----HHHHHHHHHHHc--CCccccCcccCCCC
Q psy12625        100 QD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKA-----KESKVDSIADSL--SISTCKNTLTKHLS  170 (612)
Q Consensus       100 ~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~~~~LS  170 (612)
                      .+  .+.+|+.++||+|++.+|+ .||+||+.++....    .....     ......+.++.+  |++...++.+.+||
T Consensus        79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LS  153 (251)
T d1jj7a_          79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK----PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS  153 (251)
T ss_dssp             GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSC
T ss_pred             chhhhHHHHHHhhhccccccccC-cchhhhhhhhhccc----chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCC
Confidence            54  3567889999999999986 69999998753211    11111     122234555555  56666677778999


Q ss_pred             hhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        171 GGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       171 gGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |||||||+|||||+.+|+|++||||||+||+.++.++++.|+++.+ .|+|+|++||+++  ..+.||||++|++|++++
T Consensus       154 GGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~  231 (251)
T d1jj7a_         154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIRE  231 (251)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEE
T ss_pred             hhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999876 5899999999974  357799999999999999


Q ss_pred             ecCccChhh
Q psy12625        250 QGTVPGLVP  258 (612)
Q Consensus       250 ~G~~~~~~~  258 (612)
                      +|+++++.+
T Consensus       232 ~Gt~~eLl~  240 (251)
T d1jj7a_         232 GGTHQQLME  240 (251)
T ss_dssp             EECHHHHHH
T ss_pred             ECCHHHHHh
Confidence            999998864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.8e-51  Score=407.51  Aligned_cols=213  Identities=28%  Similarity=0.415  Sum_probs=177.6

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      +|+++||+|+|+         +++++|+||||++++||++||+||||||||||+++|+|+++|     .+|+|.+||+++
T Consensus         1 mle~knvsf~Y~---------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g~~i   66 (242)
T d1mv5a_           1 MLSARHVDFAYD---------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----TAGEITIDGQPI   66 (242)
T ss_dssp             CEEEEEEEECSS---------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----SBSCEEETTEES
T ss_pred             CEEEEEEEEECC---------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC-----CCCEEEECCEEe
Confidence            489999999872         346799999999999999999999999999999999999987     689999999998


Q ss_pred             cch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCc-------cccCcc----c
Q psy12625        100 QDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIS-------TCKNTL----T  166 (612)
Q Consensus       100 ~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~----~  166 (612)
                      .+.  +.+|+++|||+|++.+|+. ||+||+.++...    ..+..    .+.+.++..++.       +..++.    .
T Consensus        67 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g  137 (242)
T d1mv5a_          67 DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERG  137 (242)
T ss_dssp             TTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTS
T ss_pred             ccccHHHHHhheEEEccccccCCc-chhhheeccccc----ccchh----hHHHHHHHHHhhhhhccCcccccccccCCC
Confidence            643  5678899999999999885 999998764221    12222    233334433332       222333    3


Q ss_pred             CCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCe
Q psy12625        167 KHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGY  246 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~  246 (612)
                      .+|||||||||+|||||+.+|+||+||||||+||+.++..+++.|++++ +|+|||++||+++ . ...||||++|++|+
T Consensus       138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~-~~~~D~i~vl~~G~  214 (242)
T d1mv5a_         138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-T-IVDADKIYFIEKGQ  214 (242)
T ss_dssp             BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-H-HHHCSEEEEEETTE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH-H-HHhCCEEEEEECCE
Confidence            4699999999999999999999999999999999999999999999997 4899999999975 3 46799999999999


Q ss_pred             EEEecCccChhh
Q psy12625        247 CTYQGTVPGLVP  258 (612)
Q Consensus       247 iv~~G~~~~~~~  258 (612)
                      +++.|+++++.+
T Consensus       215 iv~~G~~~eLl~  226 (242)
T d1mv5a_         215 ITGSGKHNELVA  226 (242)
T ss_dssp             ECCCSCHHHHHH
T ss_pred             EEEECCHHHHHh
Confidence            999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.3e-49  Score=398.98  Aligned_cols=221  Identities=24%  Similarity=0.367  Sum_probs=184.4

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ....|+++||+|+|+        .+++++|+|||++|++||++||+||||||||||+++|+|+++|     .+|+|.+||
T Consensus        10 ~~g~I~~~nvsf~Y~--------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g   76 (253)
T d3b60a1          10 ATGDLEFRNVTFTYP--------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----DEGHILMDG   76 (253)
T ss_dssp             CCCCEEEEEEEECSS--------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----SEEEEEETT
T ss_pred             CceEEEEEEEEEEeC--------CCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC-----CccEEEECC
Confidence            344699999999873        2456799999999999999999999999999999999999986     689999999


Q ss_pred             Eeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHH-----HHHHHHHc--CCccccCcccC
Q psy12625         97 TRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESK-----VDSIADSL--SISTCKNTLTK  167 (612)
Q Consensus        97 ~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~  167 (612)
                      +++.+  ...+|+.++||+|++.+++ .|+++|+.++..    ...++++..+.     +.+.++.+  |++...+..+.
T Consensus        77 ~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~  151 (253)
T d3b60a1          77 HDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV  151 (253)
T ss_dssp             EETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSC
T ss_pred             cccchhhhhhhhheEEEEeeccccCC-cchhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCC
Confidence            99764  3567889999999998886 699999987521    12333222111     22334444  45555666677


Q ss_pred             CCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeE
Q psy12625        168 HLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYC  247 (612)
Q Consensus       168 ~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i  247 (612)
                      +|||||||||+|||||+.+|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ . .+.||+|++|++|++
T Consensus       152 ~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~v~vl~~G~I  228 (253)
T d3b60a1         152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-T-IEQADEIVVVEDGII  228 (253)
T ss_dssp             SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-G-TTTCSEEEEEETTEE
T ss_pred             CcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HHhCCEEEEEECCEE
Confidence            8999999999999999999999999999999999999999999999975 889999999986 3 478999999999999


Q ss_pred             EEecCccChhh
Q psy12625        248 TYQGTVPGLVP  258 (612)
Q Consensus       248 v~~G~~~~~~~  258 (612)
                      +++|+++++.+
T Consensus       229 v~~G~~~eLl~  239 (253)
T d3b60a1         229 VERGTHSELLA  239 (253)
T ss_dssp             EEEECHHHHHH
T ss_pred             EEECCHHHHHh
Confidence            99999998865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2e-50  Score=404.36  Aligned_cols=216  Identities=28%  Similarity=0.369  Sum_probs=182.4

Q ss_pred             CceeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECC
Q psy12625         17 KHFNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINE   96 (612)
Q Consensus        17 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g   96 (612)
                      ....|+++||+|+|+        .+.+++|+|||++|++||++||+||||||||||+++|+|+++|     .+|+|.++|
T Consensus        13 ~~g~I~~~nvsf~Y~--------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----~~G~I~i~g   79 (255)
T d2hyda1          13 KQGRIDIDHVSFQYN--------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----TSGQILIDG   79 (255)
T ss_dssp             CSCCEEEEEEEECSC--------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----SEEEEEETT
T ss_pred             CCCEEEEEEEEEEeC--------CCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc-----cccccccCC
Confidence            344699999999873        2457899999999999999999999999999999999999986     689999999


Q ss_pred             Eeccc--hHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCcc-----------ccC
Q psy12625         97 TRLQD--HRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSIST-----------CKN  163 (612)
Q Consensus        97 ~~~~~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~  163 (612)
                      +++.+  ...+|+.++||+|++.+|+ .||+||+.++.    + ..++    +++.++++..++.+           ..+
T Consensus        80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~  149 (255)
T d2hyda1          80 HNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG  149 (255)
T ss_dssp             EEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred             EEcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCH----HHHHHHHHHhCCHHHHHhccccccchhc
Confidence            99864  3568899999999998886 69999998752    1 1222    23445555555532           223


Q ss_pred             cccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeec
Q psy12625        164 TLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLT  243 (612)
Q Consensus       164 ~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~  243 (612)
                      ....+||||||||++|||||+.+|+|++||||||+||+.++..+++.|+++.+ ++|+|++||+++ . ...||+|++|+
T Consensus       150 ~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~  226 (255)
T d2hyda1         150 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIE  226 (255)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEE
T ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H-HHhCCEEEEEE
Confidence            33456999999999999999999999999999999999999999999999874 789999999986 3 57899999999


Q ss_pred             CCeEEEecCccChhh
Q psy12625        244 EGYCTYQGTVPGLVP  258 (612)
Q Consensus       244 ~G~iv~~G~~~~~~~  258 (612)
                      +|++++.|+++++.+
T Consensus       227 ~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         227 NGHIVETGTHRELIA  241 (255)
T ss_dssp             TTEEEEEECHHHHHH
T ss_pred             CCEEEEECCHHHHHh
Confidence            999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-47  Score=378.70  Aligned_cols=210  Identities=26%  Similarity=0.391  Sum_probs=184.9

Q ss_pred             eeEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEe
Q psy12625         19 FNLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETR   98 (612)
Q Consensus        19 ~~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~   98 (612)
                      +.|+++||++              ..+|+||||+|++||+++|+||||||||||+|+|+|+.+      .+|+|.++|++
T Consensus         2 ~il~~~dv~~--------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~------~~G~I~~~g~~   61 (231)
T d1l7vc_           2 IVMQLQDVAE--------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------GKGSIQFAGQP   61 (231)
T ss_dssp             EEEEEEEECC--------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC------CSSEEEESSSB
T ss_pred             eEEEEECccc--------------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC------CceEEEECCEE
Confidence            5688999853              236999999999999999999999999999999999764      47999999998


Q ss_pred             ccch--HhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhH
Q psy12625         99 LQDH--RMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKR  176 (612)
Q Consensus        99 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR  176 (612)
                      +...  ...+...+|++|+.......++++++.+...        ++...+.++++++.+++.+..++++++||||||||
T Consensus        62 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qr  133 (231)
T d1l7vc_          62 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR  133 (231)
T ss_dssp             GGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHH
T ss_pred             CCcCCHHHHHhhceeeeccccCCccccHHHHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHH
Confidence            7542  4456678999999877777899999876432        12235678899999999999999999999999999


Q ss_pred             HHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEE
Q psy12625        177 LSIALELLS-------NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTY  249 (612)
Q Consensus       177 v~ia~aL~~-------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~  249 (612)
                      |+|||+|+.       +|+||+|||||+|||+.++..+.++|++++++|+|||+++||++ ++.++|||+++|++|++++
T Consensus       134 v~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~  212 (231)
T d1l7vc_         134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLA  212 (231)
T ss_dssp             HHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECC
T ss_pred             HHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEE
Confidence            999999997       77999999999999999999999999999999999999999976 6899999999999999999


Q ss_pred             ecCccChh
Q psy12625        250 QGTVPGLV  257 (612)
Q Consensus       250 ~G~~~~~~  257 (612)
                      .|+++++.
T Consensus       213 ~G~~~ev~  220 (231)
T d1l7vc_         213 SGRREEVL  220 (231)
T ss_dssp             CSBHHHHS
T ss_pred             ECCHHHHh
Confidence            99998875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.7e-44  Score=348.46  Aligned_cols=196  Identities=22%  Similarity=0.339  Sum_probs=166.4

Q ss_pred             eEEEEeEEEEEEeeccccccccccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEec
Q psy12625         20 NLLFQDISYSALYYDTHSYSIKSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRL   99 (612)
Q Consensus        20 ~l~~~~ls~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~   99 (612)
                      .|+++||++.|          + +++|+|||+++++||+++|+||||||||||+|+|+|+++|     .+|+|.+||+++
T Consensus         2 ~lev~~ls~~y----------~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p-----~~G~I~~~g~~i   65 (200)
T d1sgwa_           2 KLEIRDLSVGY----------D-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----LKGEIIYNGVPI   65 (200)
T ss_dssp             EEEEEEEEEES----------S-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----SEEEEEETTEEG
T ss_pred             eEEEEEEEEEe----------C-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc-----CCCEEEECCEeh
Confidence            58999999986          2 4699999999999999999999999999999999999987     689999999986


Q ss_pred             cchHhhccceEEEccCCCCCCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHH
Q psy12625        100 QDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSI  179 (612)
Q Consensus       100 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i  179 (612)
                      .   ..+..++|+||+..++..+|++|++.+...+... ...    ++.+.+.++.+++.+ .++++++|||||||||+|
T Consensus        66 ~---~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~----~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~i  136 (200)
T d1sgwa_          66 T---KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQL  136 (200)
T ss_dssp             G---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHH
T ss_pred             h---HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccC----HHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHH
Confidence            4   4567899999999999999999999987766422 222    234667788888765 456789999999999999


Q ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        180 ALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       180 a~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      ||+|+.+|+++||||||+|||+.++.++++.|+++.+++.++|+++|+.    .++||++.+|++
T Consensus       137 a~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~  197 (200)
T d1sgwa_         137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK  197 (200)
T ss_dssp             HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred             HHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence            9999999999999999999999999999999999987544444544442    257999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-44  Score=363.18  Aligned_cols=189  Identities=23%  Similarity=0.304  Sum_probs=155.9

Q ss_pred             cccccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCC
Q psy12625         41 KSKDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQE  120 (612)
Q Consensus        41 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~  120 (612)
                      ..++||+|||++|++||++||+||||||||||+++|+|+++|     .+|+|.++|           +++|++|++.+++
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p-----~~G~I~~~g-----------~i~~v~Q~~~l~~  110 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-----SEGIIKHSG-----------RVSFCSQFSWIMP  110 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----SEEEEECCS-----------CEEEECSSCCCCS
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC-----CCcEEEECC-----------EEEEEeccccccC
Confidence            457899999999999999999999999999999999999986     689999987           3899999999887


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHc-------CCccc----cCcccCCCChhhhhHHHHHHHHhhCCCE
Q psy12625        121 LLTVEESLTVAAHLKLGNQYSRKAKESKVDSIADSL-------SISTC----KNTLTKHLSGGQKKRLSIALELLSNPSI  189 (612)
Q Consensus       121 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~----~~~~~~~LSgGerqRv~ia~aL~~~p~i  189 (612)
                       .||+||+.++..      ....    ..+++++..       .+.+.    .++...+|||||||||+|||||+.+|+|
T Consensus       111 -~tv~eni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i  179 (281)
T d1r0wa_         111 -GTIKENIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL  179 (281)
T ss_dssp             -EEHHHHHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred             -ceeecccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc
Confidence             599999976521      2222    122223322       22222    3344557999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecCCeEEEecCccChhh
Q psy12625        190 IFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGTVPGLVP  258 (612)
Q Consensus       190 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  258 (612)
                      |+||||||+||+.++.++++.+.+...+++|+|+++|+++  ..+.||||++|++|+++++|+++++..
T Consensus       180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999865444456899999999974  468899999999999999999998754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.60  E-value=3.2e-17  Score=152.93  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=100.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccC--CC--CCCCCCHHHHHHHHHHh
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQD--NL--LQELLTVEESLTVAAHL  134 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~--~~--l~~~lTv~e~l~~~~~l  134 (612)
                      ++|+||||||||||+++|+|.+++     ..|.+...+.+....   .++.++..+.  +.  .....+..+.      .
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~-----~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~   68 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPET---KKRTGFRIITTEGKKKIFSSKFFTSK------K   68 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG-----GEEEEEEEEEC---------CCEEEEEETTCCEEEEEETTCCCS------S
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC-----CcceEEECCcchHHH---HHhhhhhhhhhhHHHHHHhhhhhhhh------h
Confidence            789999999999999999999875     578998887653221   1222222111  00  0000000000      0


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy12625        135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDM  214 (612)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l  214 (612)
                      +.. +                    ...+...-.+|+|+++|.++++++..+|+++++|||....  .....+.+.+.++
T Consensus        69 ~~~-~--------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~  125 (178)
T d1ye8a1          69 LVG-S--------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQI  125 (178)
T ss_dssp             EET-T--------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHH
T ss_pred             hhh-h--------------------hhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHH
Confidence            000 0                    0011112248999999999999999999999999985443  3345566666665


Q ss_pred             Hh-CCCEEEEEecCCchHHHhcccceeeecCCeEEEecC
Q psy12625        215 AH-QGTMIICTLHQPSASLLNMADYLYVLTEGYCTYQGT  252 (612)
Q Consensus       215 ~~-~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~  252 (612)
                      .+ .+.++|+++|+..  ....+|++..+.+|+++.-++
T Consensus       126 l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         126 MHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             HTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred             hccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence            54 5899999999964  467899999999999986543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=2.1e-10  Score=115.45  Aligned_cols=77  Identities=30%  Similarity=0.431  Sum_probs=65.2

Q ss_pred             cCCCChhhhhHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceee
Q psy12625        166 TKHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYV  241 (612)
Q Consensus       166 ~~~LSgGerqRv~ia~aL----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~  241 (612)
                      +..+|+|||+...++..+    ..+|+++++|||-++|||.....+.+.|++.++ +.-||+|||.|.  +.+.+|+++.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence            457999999998887764    456799999999999999999999999999875 578999999985  5789999866


Q ss_pred             --ecCC
Q psy12625        242 --LTEG  245 (612)
Q Consensus       242 --L~~G  245 (612)
                        +.+|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence              5556

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=1.5e-09  Score=113.40  Aligned_cols=74  Identities=23%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             CCCChhhhhHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeee
Q psy12625        167 KHLSGGQKKRLSIALEL----LSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVL  242 (612)
Q Consensus       167 ~~LSgGerqRv~ia~aL----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L  242 (612)
                      ..+|||||.++++|..+    ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|  .+.+.+|+++.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence            46899999998877554    457789999999999999999999999999876677899999997  478999998755

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.24  E-value=5.6e-06  Score=78.97  Aligned_cols=52  Identities=15%  Similarity=0.266  Sum_probs=39.1

Q ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhcc
Q psy12625        183 LLSNPSIIFLDEPTTGLDYLNATNLVK-LLRDMAHQGTMIICTLHQPSASLLNMA  236 (612)
Q Consensus       183 L~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~i~~~~  236 (612)
                      .+++..++++||+.+|=|+.....+.. .++.|.+.+..++++||..  ++..+.
T Consensus       111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l~  163 (224)
T d1ewqa2         111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTALG  163 (224)
T ss_dssp             HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTCC
T ss_pred             cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhhh
Confidence            345667999999999999988777664 4456677788899999985  455543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2e-05  Score=75.59  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCCc
Q psy12625        184 LSNPSIIFLDEPTTGLDYLNATNLVKL-LRDMAH-QGTMIICTLHQPS  229 (612)
Q Consensus       184 ~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~-~g~tvi~~~H~~~  229 (612)
                      +++..++++||+.+|=|+.....+... ++.+.. .+..++++||...
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            455679999999999999999888654 667765 4567888888753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.54  E-value=0.00023  Score=69.08  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             ccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         44 DILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        44 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +-|+++.+=+.+|+++.|.|++|+|||||+.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34555544489999999999999999999876663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=1.1e-05  Score=73.80  Aligned_cols=35  Identities=11%  Similarity=0.079  Sum_probs=29.5

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -+++.++.+.+| +++|+|||||||||+|++|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            356778888777 99999999999999999997543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.0011  Score=63.66  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=34.6

Q ss_pred             HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q psy12625        182 ELLSNPSIIFLDEPTT-----GLDYLNATNLVKLLRDMAH-QGTMIICTLHQ  227 (612)
Q Consensus       182 aL~~~p~illlDEPts-----gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~  227 (612)
                      .-..+|+++++|--++     --|......+++.|+.+++ .+.+||+++|.
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            3457899999995542     2266777788888888876 58899988775

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.16  E-value=0.0023  Score=60.12  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc---------hHHHhcccceeeec
Q psy12625        185 SNPSIIFLDEPTT---GLDYLNATNLVKLLRDMAH-QGTMIICTLHQPS---------ASLLNMADYLYVLT  243 (612)
Q Consensus       185 ~~p~illlDEPts---gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~---------~~i~~~~D~v~~L~  243 (612)
                      .+|++++.|--+.   +.+.......+..|.++++ .+.+++++.|-..         ..+...+|-++.|.
T Consensus       115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~  186 (242)
T d1tf7a2         115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ  186 (242)
T ss_dssp             TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence            4688999886443   4466665666666666654 7889888887421         12345677777664

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.11  E-value=0.00012  Score=65.36  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .|++++|.||+||||||+.+.|+....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999998653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00011  Score=66.98  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      |.++.|+||||||||||.+.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00011  Score=65.17  Aligned_cols=24  Identities=38%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++|+|++|||||||++.|+..++
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00015  Score=68.51  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      +|+.++++|+||+|||||+|.|.|...-     ..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~-----~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKL-----RVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCC-----C-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhh-----hccCcc
Confidence            5899999999999999999999886442     356664

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00015  Score=64.60  Aligned_cols=28  Identities=29%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++.++.|+||+||||||+.+.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999998653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.84  E-value=0.00025  Score=63.17  Aligned_cols=27  Identities=19%  Similarity=0.060  Sum_probs=24.4

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00031  Score=62.75  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..++|.||+|||||||.+.|+....
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00041  Score=64.68  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .|.++.|+||||+|||||.+.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            489999999999999999999876543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.65  E-value=0.00043  Score=61.69  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++|+|++|||||||++.|...++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999998877654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.64  E-value=0.00046  Score=61.37  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=23.9

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|-.++|.||+||||||+.+.|+-.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3566789999999999999999987543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.63  E-value=0.00048  Score=59.95  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +++.|.||+|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.00018  Score=68.25  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEE
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIE   93 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~   93 (612)
                      +|+.++++|+||+|||||+|.|.|-..-     ..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~-----~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGL-----RTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHh-----hhcccc
Confidence            5788999999999999999999986431     356665

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00047  Score=70.40  Aligned_cols=28  Identities=32%  Similarity=0.680  Sum_probs=23.3

Q ss_pred             EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q psy12625         50 SGVFVSKELSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        50 s~~i~~Ge~~aI~GpsGsGKSTLL~~l~   77 (612)
                      ++.+.++.+++|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3445556699999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.58  E-value=0.00055  Score=60.71  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++.|.||+||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00044  Score=61.66  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+.|.||+|+|||||++.++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            578999999999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.54  E-value=0.00058  Score=60.26  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .++.|.||+||||||+.+.|+....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999997643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.53  E-value=0.014  Score=53.65  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             cccce-EEEEeCCeEEEEECCCCCcHHHHHHHH
Q psy12625         45 ILKDI-SGVFVSKELSVILGPSGSGKTKLLDIL   76 (612)
Q Consensus        45 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~l   76 (612)
                      -|+++ ++=+++|+++.|.|++|+|||||.--+
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            34443 345999999999999999999997443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0029  Score=60.79  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +..-+.+.||+|+|||+|.+.||...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            44557799999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.52  E-value=0.002  Score=64.17  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=25.5

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      ++.|.-+.|.||.||||||||++|.+..++
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence            344556899999999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.51  E-value=0.021  Score=55.01  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +..+++|.|..|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.48  E-value=0.00058  Score=60.41  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+||+||||||+.+.|+-.+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999998643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.40  E-value=0.00079  Score=60.12  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++|.|++||||||+.+.|+-.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999987654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00074  Score=58.79  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+.|+||+||||||+-+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999997654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.36  E-value=0.00073  Score=61.17  Aligned_cols=23  Identities=39%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++||-||+|||||||.+.|+-..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0006  Score=61.79  Aligned_cols=26  Identities=31%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.28  E-value=0.0008  Score=61.46  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||+|.|.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999964

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0018  Score=58.31  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -+||+|++|+|||||+|.|+|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            37999999999999999999853

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0034  Score=60.56  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++..-+.+.||+|+|||+|.+++|+...
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            33445577999999999999999998653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.22  E-value=0.001  Score=60.60  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +..+++|+||+||||||+.+.|+-.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=59.31  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=24.8

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +=+++|+++.|.||+|+|||||+.-++.
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999999876664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0012  Score=60.15  Aligned_cols=23  Identities=48%  Similarity=0.618  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|+||||||||||++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            68999999999999999976543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.11  E-value=0.0012  Score=61.84  Aligned_cols=22  Identities=41%  Similarity=0.703  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.10  E-value=0.00079  Score=60.86  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +||+|++++|||||+|.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0014  Score=59.37  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+.|+||||+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.06  E-value=0.017  Score=53.53  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCCCCCCCCceeEEEECCEeccchHhhccceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRRPKKTETNSGYIEINETRLQDHRMLRKESCYIMQDNLLQELLTVEESLTVAAHL  134 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~p~~~~~~~G~I~~~g~~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~l  134 (612)
                      ...+++++||+|+||||.+==||....                      ...++++.+.=|..-                
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~----------------------~~g~kV~lit~Dt~R----------------   52 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK----------------------KKGFKVGLVGADVYR----------------   52 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH----------------------HTTCCEEEEECCCSS----------------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH----------------------HCCCceEEEEeeccc----------------
Confidence            456899999999999998765664322                      012346666543221                


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCccccCcccCCCChhhhhHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy12625        135 KLGNQYSRKAKESKVDSIADSLSISTCKNTLTKHLSGGQKKRLSIALELLSNPSIIFLDEPTTGLDY  201 (612)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~p~illlDEPtsgLD~  201 (612)
                              ....+..+...+.+|+.-..-....++.-=.  +=++..+...+-+++|.|  |+|..+
T Consensus        53 --------~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~~  107 (211)
T d1j8yf2          53 --------PAALEQLQQLGQQIGVPVYGEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRHG  107 (211)
T ss_dssp             --------HHHHHHHHHHHHHHTCCEECCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred             --------cchhHHHHHhccccCcceeecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcCc
Confidence                    1112334455556666533222222221111  114555667889999999  777643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0016  Score=58.06  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||+|.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.02  E-value=0.0012  Score=59.21  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||+|.|.|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999963

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0016  Score=59.35  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.++.|+||+||||||+.+.|+..+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0016  Score=59.51  Aligned_cols=22  Identities=45%  Similarity=0.661  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+||||||||||.+.|+-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.92  E-value=0.0017  Score=57.55  Aligned_cols=22  Identities=41%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.|+|++||||||+.+.||..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5788999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0016  Score=59.61  Aligned_cols=23  Identities=43%  Similarity=0.619  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|||||||+|.|.|-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999999854

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.002  Score=57.51  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .++|+|.+|+|||||+|.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.87  E-value=0.0016  Score=59.35  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.+.++.|+||+||||||+.+.|+-.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0019  Score=59.67  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++||-||+|||||||.+.|+-.+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999987543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0018  Score=56.15  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.|.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35799999999999999999854

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.80  E-value=0.0018  Score=56.16  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|++|+|||||++.+++-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            579999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0015  Score=58.80  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +||+|.+|+|||||+|.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999853

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0023  Score=57.33  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+|++|+|||||+|.|+|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999964

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0023  Score=58.09  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++.|+||+||||||..+.|+-.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999863

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.76  E-value=0.0015  Score=58.18  Aligned_cols=23  Identities=43%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|||||||++.|.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999998853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.73  E-value=0.0021  Score=57.37  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+|++||||||+-+.||-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.73  E-value=0.002  Score=58.50  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.72  E-value=0.0026  Score=57.66  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|=-+.|+||+||||||+.+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3566778999999999999999994

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.70  E-value=0.0023  Score=57.23  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.|+||+||||||+.+.|+-.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999997643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.69  E-value=0.0021  Score=56.13  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|+|++|+|||||++.+.+-..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999988643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0063  Score=57.24  Aligned_cols=42  Identities=12%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        186 NPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       186 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      +.+++++||.-. |.......+.+.+.+-. ....+|++++++.
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence            456999999964 77777777766665432 3455788888875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0029  Score=55.31  Aligned_cols=23  Identities=43%  Similarity=0.625  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||+|.|+|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.0027  Score=56.23  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +.++|++||||||+-+.|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45779999999999999997653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.58  E-value=0.0028  Score=56.59  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3677899999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0029  Score=56.82  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++-+++.++|++||||||+.+-++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4557999999999999999998853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.53  E-value=0.0031  Score=58.39  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +++|.||+||||||+.+.|+-.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.52  E-value=0.0026  Score=60.49  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ....+.+.||+|||||||.+.|++-..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345688999999999999999999654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.46  E-value=0.007  Score=57.92  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|.+|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999999964

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.41  E-value=0.0037  Score=56.21  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0018  Score=57.83  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++++|||||+|.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.40  E-value=0.0034  Score=55.26  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|+|++|+|||||++.|.+-..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~~   27 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGEDV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCCC
Confidence            67999999999999999988543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0038  Score=57.49  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++|.||+||||||+-+.|+..+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999997543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0038  Score=56.90  Aligned_cols=24  Identities=33%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+++++|.+|||||||.+.|+..+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999644

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.33  E-value=0.08  Score=50.60  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +=++.|.++-|-||+|||||||.-.++..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHH
Confidence            67899999999999999999998766654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.27  E-value=0.0041  Score=55.77  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.|+||+||||||+-+.|+-.+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999998643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.19  E-value=0.0041  Score=55.91  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +||+|+..||||||+|.|.|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0041  Score=55.67  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.|+||+||||||..+.|+-.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999854

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.05  E-value=0.0045  Score=56.76  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.|.+-.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.0055  Score=56.95  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +=+++|+++.|.||+|||||||.--++-
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999999866653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0053  Score=55.13  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.|+||+||||||+.+.|+-.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.04  E-value=0.0058  Score=56.62  Aligned_cols=26  Identities=27%  Similarity=0.116  Sum_probs=23.6

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|-++-+.|.||||||||.+.|.-.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68889999999999999999999753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.0016  Score=57.11  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||+|.|+|..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.02  E-value=0.0053  Score=55.84  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++|+||+||||||+-+.|+-.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.02  E-value=0.0043  Score=56.30  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -+++|-|+.||||||+++.|+....
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4899999999999999999987553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.99  E-value=0.0072  Score=53.13  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            578999999999999988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.96  E-value=0.0052  Score=55.58  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHC
Q psy12625         58 LSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++||.|++||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.94  E-value=0.0053  Score=54.35  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|.+|||||||++.|.+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999853

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0099  Score=52.31  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++++|++|+|||||++.+.+-.
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999887643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.015  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.193  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|++|+|||||++.+.+-
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0055  Score=57.16  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++.+++|-|+-||||||+++.|+..++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.0081  Score=56.56  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.|.||+|+||||+.++||....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999998643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.0059  Score=60.09  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      =++||-|++||||||+.+.|..++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3899999999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0071  Score=60.06  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +|+.+.-.-...-.++|.||+|||||||++.|+...
T Consensus        43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            444442222456789999999999999999998643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.0098  Score=52.65  Aligned_cols=21  Identities=43%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|++|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            689999999999999988764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.013  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|.+|+|||||++-+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999977653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.55  E-value=0.0081  Score=55.94  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+.|.||+|+||||+.++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37799999999999999998743

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.50  E-value=0.01  Score=55.46  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHH-HHHC
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLD-ILAG   78 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~-~l~g   78 (612)
                      =+++|+++.|.||+|||||||.- .++.
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            48999999999999999999964 4433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0085  Score=55.41  Aligned_cols=28  Identities=21%  Similarity=0.118  Sum_probs=24.3

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++|.+++|-|+.||||||+.+.|+..+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999887543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.47  E-value=0.01  Score=54.93  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHH
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~   77 (612)
                      +=+++|+++.|.|++|+|||||.--++
T Consensus        29 GGl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          29 GGLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            459999999999999999999975554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.47  E-value=0.0085  Score=56.02  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -+.+.||+|+||||+.++|+.-..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            367999999999999999997544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.46  E-value=0.011  Score=52.08  Aligned_cols=21  Identities=38%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.39  E-value=0.0091  Score=56.30  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      .+..+.|.||+|+|||||++.++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            5678999999999999999988754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.0096  Score=54.68  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.+++|-|+.||||||+.+.|+..+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.017  Score=50.72  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|++|+|||||++-+.+-.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999887753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.34  E-value=0.0079  Score=53.30  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999774

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.011  Score=60.18  Aligned_cols=23  Identities=30%  Similarity=0.634  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +||+|.+|+|||||+|.|.|...
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            79999999999999999999643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.02  Score=50.41  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|.+|+|||||++-+.+-
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999987763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.013  Score=51.37  Aligned_cols=20  Identities=20%  Similarity=0.458  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++++|++|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987774

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.019  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            7899999999999999877543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.21  E-value=0.011  Score=54.28  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHC
Q psy12625         58 LSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++||.|+.||||||+.+.+.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999963

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.023  Score=49.95  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++++|.+|+|||||++-+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999976653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.19  E-value=0.021  Score=50.32  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHC
Q psy12625         58 LSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      -++|+|.+|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.01  Score=55.60  Aligned_cols=22  Identities=36%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+.||+|+||||+.+++++..
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.012  Score=54.81  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=23.6

Q ss_pred             EEeCCeEEEEECCCCCcHHHHHHHHH
Q psy12625         52 VFVSKELSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        52 ~i~~Ge~~aI~GpsGsGKSTLL~~l~   77 (612)
                      =+++|+++.|.||+|||||||.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            59999999999999999999976665

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.10  E-value=0.012  Score=58.29  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ...-.++|.||+|||||||+..|...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.012  Score=51.59  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.012  Score=54.62  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.+.||+|+||||+.++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            679999999999999999874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.028  Score=49.39  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++-+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.97  E-value=0.012  Score=54.98  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++||+|..+||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.012  Score=52.33  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999977663

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.93  E-value=0.012  Score=57.78  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      |+.-+.+.||+|+|||+|.|+||...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            33455689999999999999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.025  Score=50.38  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++++|++|+|||||++-+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999977664

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.022  Score=50.35  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|.+|+|||||++-+.+-
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999877653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.024  Score=50.03  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++++|++|+|||||++-+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            77999999999999987765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.015  Score=52.05  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|++|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.79  E-value=0.0078  Score=58.48  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=17.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++||.|+|||||||+.+.|....
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.78  E-value=0.016  Score=53.42  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++.+++++||+|+||||.+-=||..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999987555654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.019  Score=50.66  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|++|+|||||++.+.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.72  E-value=0.013  Score=55.61  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .-+.+.||+|+|||+|.++||...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            346799999999999999999753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.015  Score=53.75  Aligned_cols=27  Identities=30%  Similarity=0.295  Sum_probs=24.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +|.+++|=|+-||||||+.+.|+-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999987665

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.026  Score=49.96  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|++|+|||||++.+.+-.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            36799999999999998877643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.62  E-value=0.029  Score=50.03  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|.+|+|||||++.+.+-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.017  Score=50.82  Aligned_cols=23  Identities=35%  Similarity=0.667  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++++|++|+|||||++.+.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEECCCCcCHHHHHHHHhCCcc
Confidence            67999999999999999988643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.015  Score=51.51  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.58  E-value=0.022  Score=49.67  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|..|+|||||++-+.+-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.018  Score=52.92  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHC
Q psy12625         58 LSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++||.|+.||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.48  E-value=0.019  Score=53.94  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ..+.|.||+|+||||+++.|+..++
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHh
Confidence            4788999999999999999998664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.029  Score=48.89  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|.+|+|||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.044  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      -++|+|.+|+|||||++-+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999887764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.027  Score=49.34  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|.+|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.21  E-value=0.012  Score=52.51  Aligned_cols=21  Identities=43%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.19  E-value=0.025  Score=49.74  Aligned_cols=28  Identities=21%  Similarity=0.114  Sum_probs=25.0

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .+||.++++-|+=|||||||.|.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4799999999999999999999988643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.022  Score=50.35  Aligned_cols=22  Identities=41%  Similarity=0.770  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++++|.+|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6799999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.16  E-value=0.018  Score=54.55  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -+.+.||+|+|||+|.++|++..
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            36899999999999999999754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.15  E-value=0.034  Score=49.86  Aligned_cols=33  Identities=18%  Similarity=0.071  Sum_probs=25.6

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .++..-..+ .|.-+.|.||||+|||||.-.|..
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            345444445 788899999999999999877754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=0.021  Score=52.80  Aligned_cols=22  Identities=36%  Similarity=0.372  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+-||+|+||||+.++++.-+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6789999999999999998643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.12  E-value=0.026  Score=52.02  Aligned_cols=25  Identities=40%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+++++||+|+||||.+-=||...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999887676543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.039  Score=48.43  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|.+|+|||||++-+.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999888754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.039  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.01  E-value=0.024  Score=51.37  Aligned_cols=24  Identities=42%  Similarity=0.606  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +++|-|+-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999987553

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.031  Score=48.94  Aligned_cols=20  Identities=35%  Similarity=0.405  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|+|.+|+|||||++-+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.88  E-value=0.023  Score=49.87  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|+|.+|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999988875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.027  Score=54.57  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999887543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.78  E-value=0.016  Score=51.22  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.++|++|+|||||++.+.+-
T Consensus        15 IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            669999999999999998754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.75  E-value=0.052  Score=48.54  Aligned_cols=33  Identities=24%  Similarity=0.162  Sum_probs=24.7

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .++.. ...-.|.=+.|.|+||+|||||.-.+..
T Consensus         4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEE-EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34433 3345788899999999999999877664

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.74  E-value=0.023  Score=54.13  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +.+.||+|+|||+|.++++...
T Consensus        41 iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEecCCCCCchHHHHHHHHHh
Confidence            6789999999999999999854

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.047  Score=47.99  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++++|.+|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.055  Score=47.50  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++++|.+|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57899999999999998775

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.027  Score=51.92  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=27.2

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       187 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      .+++++||.- .+....+..+.+.|.+.. ....++++++++.
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~  140 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH  140 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred             eEEEEEeccc-cchhhHHHHHHHHhhhcc-cceeeccccCcHH
Confidence            4699999974 677777777777776543 2344555655543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.56  E-value=0.033  Score=51.48  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=20.1

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++..+++++||+|+||||.+-=||-+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34568899999999999987555543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=0.018  Score=50.93  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=8.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++|+|.+|+|||||++.+.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.42  E-value=0.021  Score=53.85  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++.|.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.019  Score=50.72  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|++|+|||||++.+.+-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999977653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.18  E-value=0.04  Score=49.72  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      +||+|.-.+|||||++.|.|...
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhhh
Confidence            68999999999999999998643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.063  Score=46.80  Aligned_cols=21  Identities=33%  Similarity=0.434  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++++|.+|+|||||++-+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.04  E-value=0.018  Score=56.89  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      .-+.|.||+|+|||||+|.+++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999998874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.056  Score=48.43  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ++++|++|+|||||++-+.+-.
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999997776543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.033  Score=48.89  Aligned_cols=20  Identities=40%  Similarity=0.547  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|+|++|+|||||++-+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999996654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.029  Score=51.82  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         56 KELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        56 Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -.+++++||+|+||||.+-=||-+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999875566543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.033  Score=53.69  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=27.8

Q ss_pred             cccccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         43 KDILKDISGVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        43 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ..+|+.++-   |=-+++|+||-++|||||||.|.|..
T Consensus        22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            346666653   33589999999999999999999964

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.80  E-value=0.066  Score=47.52  Aligned_cols=32  Identities=31%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             ccceEEEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         46 LKDISGVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        46 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++. ++..-.|.=+.|.|+||+|||||.-.+..
T Consensus         6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            444 44456788999999999999999866654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=0.068  Score=47.40  Aligned_cols=20  Identities=45%  Similarity=0.674  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++++|.+|+|||||++-+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999976654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.66  E-value=0.041  Score=49.28  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q psy12625         59 SVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~   77 (612)
                      +.|+|.+|+|||||++-+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999999884

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.054  Score=51.73  Aligned_cols=28  Identities=32%  Similarity=0.394  Sum_probs=24.1

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +=+++|.++-|.||+|||||||+-.++.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence            6799999999999999999999644443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.29  E-value=0.043  Score=53.64  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +||+|.+.+|||||+|+|+|-.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.045  Score=48.87  Aligned_cols=20  Identities=40%  Similarity=0.496  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|+|.+|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.047  Score=52.70  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             cccceEEEEeCCeEEEEECCCCCcHHHHHHHHHCC
Q psy12625         45 ILKDISGVFVSKELSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        45 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +++-+. .+-+|+-.+|+|++|+|||||+..|+.-
T Consensus        33 ~ID~l~-PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          33 VLDLAS-PIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHHHS-CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeecc-cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            454443 7889999999999999999999988763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.93  E-value=0.052  Score=50.12  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=17.5

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q psy12625         58 LSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~   77 (612)
                      -+.|+|++|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46799999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.78  E-value=0.061  Score=54.57  Aligned_cols=54  Identities=22%  Similarity=0.356  Sum_probs=40.6

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhccccee
Q psy12625        178 SIALELLSNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLY  240 (612)
Q Consensus       178 ~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~  240 (612)
                      ++..+|=.+|++++.+|..   |+.++...+    +.+..|..|+.|.|-.+.  ....+|+.
T Consensus       219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl~  272 (401)
T d1p9ra_         219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRLR  272 (401)
T ss_dssp             HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHHH
T ss_pred             HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCch--Hhhhhhhh
Confidence            4556677899999999997   566655444    456789999999998653  56777765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.71  E-value=0.052  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++++|.-+||||||+|+|.|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.67  E-value=0.045  Score=56.29  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      =+.++||+|+|||-|.|.||+.+.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.56  E-value=0.053  Score=52.30  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      .++++|.-.||||||+|+|+|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37799999999999999999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.50  E-value=0.048  Score=52.85  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -+||+|.+.+|||||+++|++-.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999999753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.069  Score=52.26  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         55 SKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      |...+.++||+|+|||.|.+.||-.+
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhc
Confidence            44467899999999999999999764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.11  E-value=0.081  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      .++||.|+-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999964

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.33  E-value=0.071  Score=53.29  Aligned_cols=29  Identities=31%  Similarity=0.322  Sum_probs=26.1

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      ++++..+.+.||+|+||||+.++|++...
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            36788999999999999999999999764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.02  E-value=0.12  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -+||+|.-.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            478999999999999999998654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.00  E-value=0.098  Score=47.70  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHC
Q psy12625         59 SVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g   78 (612)
                      ++|+|..+||||||++.|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999954

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.098  Score=48.33  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         57 ELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++|=|+-||||||+++.|+-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4788999999999999999987554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.081  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      ++.|.|.=||||||||+-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.74  E-value=0.1  Score=51.04  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=23.2

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      ...++| ++.+.||+|+|||.|.+.|++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            344444 66678999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.66  E-value=0.1  Score=47.87  Aligned_cols=94  Identities=12%  Similarity=0.114  Sum_probs=57.5

Q ss_pred             hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhc-ccceeeecCCeEEEecCccCh-----
Q psy12625        184 LSNPSIIFLDEPTTG-LDYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNM-ADYLYVLTEGYCTYQGTVPGL-----  256 (612)
Q Consensus       184 ~~~p~illlDEPtsg-LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~-----  256 (612)
                      ..+.+++++|+--.= =+...+..+..++..+.+.|+.+|+++..+..++-.. -|=.--++.|-++.-.++++.     
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL  174 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKII  174 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHHH
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHHH
Confidence            568899999987442 2477788899999999888999999998876433111 111122455655544333321     


Q ss_pred             hhHHhhcCCCCCCCCCchhHHHH
Q psy12625        257 VPYLSDFGYQCPSNYNPADYVIE  279 (612)
Q Consensus       257 ~~~f~~~g~~~p~~~~~ad~~~~  279 (612)
                      ..++.+.|+..++  +..+|+++
T Consensus       175 ~~~a~~rgl~l~~--~v~~yl~~  195 (213)
T d1l8qa2         175 KEKLKEFNLELRK--EVIDYLLE  195 (213)
T ss_dssp             HHHHHHTTCCCCH--HHHHHHHH
T ss_pred             HHHHHHcCCCCCH--HHHHHHHH
Confidence            2234556665544  45555543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.51  E-value=0.096  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      -++|+|-+.+|||||+++|++-.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.48  E-value=0.1  Score=46.33  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +.++|.+|+|||||++-+..-
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999988654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.47  E-value=0.096  Score=49.97  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q psy12625         58 LSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~   77 (612)
                      -++|+|+.|+|||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47899999999999999983

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.47  E-value=0.11  Score=49.55  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHH-HHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLL-DILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL-~~l~g   78 (612)
                      +=++.|.++-|.||+|+|||||+ .+.+.
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence            57899999999999999999995 44443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.27  E-value=0.11  Score=45.72  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHCCCCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGYRRP   82 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~~~p   82 (612)
                      +.++|..|+|||||++-+..-..|
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~   28 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEA   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCC
Confidence            689999999999999887654333

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.43  E-value=0.12  Score=49.41  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHH---HCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDIL---AGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l---~g~~~   81 (612)
                      -+||+|..|||||||...|   +|..+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            4789999999999999988   55544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.40  E-value=0.2  Score=47.74  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             EEEeCCeEEEEECCCCCcHHHHHHHHHC
Q psy12625         51 GVFVSKELSVILGPSGSGKTKLLDILAG   78 (612)
Q Consensus        51 ~~i~~Ge~~aI~GpsGsGKSTLL~~l~g   78 (612)
                      +.+-+|+..+|.|++|+|||||+.-++.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            4788999999999999999999776653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=0.18  Score=45.84  Aligned_cols=41  Identities=17%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       187 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      .+++++||.- .|...++..+++.|.+-. .+..+|+++++++
T Consensus       109 ~kviIide~d-~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~  149 (207)
T d1a5ta2         109 AKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPE  149 (207)
T ss_dssp             CEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred             cceEEechhh-hhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence            6799999863 455666666666665432 3456677888865

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=0.19  Score=46.67  Aligned_cols=42  Identities=17%  Similarity=0.239  Sum_probs=29.0

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q psy12625        187 PSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPSA  230 (612)
Q Consensus       187 p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~  230 (612)
                      .+++++||.=. |+..++..+.+.+.+-. .+..+|+++++++.
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~  157 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK  157 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence            45999999954 78777777666665321 35677888887653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.67  E-value=0.16  Score=51.15  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q psy12625         57 ELSVILGPSGSGKTKLLDILA   77 (612)
Q Consensus        57 e~~aI~GpsGsGKSTLL~~l~   77 (612)
                      ..+.|+|++|||||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            358999999999999986443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.23  Score=48.02  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             EEEE-eCCeEEEEECCCCCcHHHHH
Q psy12625         50 SGVF-VSKELSVILGPSGSGKTKLL   73 (612)
Q Consensus        50 s~~i-~~Ge~~aI~GpsGsGKSTLL   73 (612)
                      |..+ +.|++..+.|.||+|||||-
T Consensus         7 san~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           7 SANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             ccccCCCCCEEEEEccCCCCcccce
Confidence            3344 46889999999999999964

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=84.90  E-value=0.21  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHCC
Q psy12625         59 SVILGPSGSGKTKLLDILAGY   79 (612)
Q Consensus        59 ~aI~GpsGsGKSTLL~~l~g~   79 (612)
                      +||+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.23  Score=47.27  Aligned_cols=24  Identities=33%  Similarity=0.357  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -..|+||+|.|||++..-++.++.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            457999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.31  E-value=0.26  Score=44.47  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         58 LSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        58 ~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      -..|+||+|.|||++..-|+.++.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            357999999999999999998654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.16  E-value=0.25  Score=48.06  Aligned_cols=27  Identities=37%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             eCCeEEEEECCCCCcHHHHHHHHHCCC
Q psy12625         54 VSKELSVILGPSGSGKTKLLDILAGYR   80 (612)
Q Consensus        54 ~~Ge~~aI~GpsGsGKSTLL~~l~g~~   80 (612)
                      +|.-.+.++||+|+|||.|.+.|+-.+
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHh
Confidence            344467799999999999999999865

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.76  E-value=0.28  Score=47.57  Aligned_cols=19  Identities=42%  Similarity=0.702  Sum_probs=16.9

Q ss_pred             CCeEEEEECCCCCcHHHHH
Q psy12625         55 SKELSVILGPSGSGKTKLL   73 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL   73 (612)
                      .|++....|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4789999999999999973

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.37  E-value=0.23  Score=47.11  Aligned_cols=19  Identities=32%  Similarity=0.595  Sum_probs=14.6

Q ss_pred             EEEEECCCCCcHHHH-HHHH
Q psy12625         58 LSVILGPSGSGKTKL-LDIL   76 (612)
Q Consensus        58 ~~aI~GpsGsGKSTL-L~~l   76 (612)
                      -+.|.|+.||||||. +..+
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            367999999999975 4444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=82.88  E-value=0.21  Score=47.94  Aligned_cols=26  Identities=27%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             ccccccceEEEEeCCeEEEEECCCCCcHHHHH
Q psy12625         42 SKDILKDISGVFVSKELSVILGPSGSGKTKLL   73 (612)
Q Consensus        42 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL   73 (612)
                      .+.++++.     .|- +.|.|+.||||||.|
T Consensus        16 Q~~~v~~~-----~g~-~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          16 QQEAVRTT-----EGP-LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             HHHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred             HHHHHhCC-----CCC-EEEEecCCccHHHHH
Confidence            34577753     344 678899999999765

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.48  E-value=0.45  Score=41.28  Aligned_cols=58  Identities=24%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhcccceeeecC
Q psy12625        186 NPSIIFLDEPTTGL--DYLNATNLVKLLRDMAHQGTMIICTLHQPSASLLNMADYLYVLTE  244 (612)
Q Consensus       186 ~p~illlDEPtsgL--D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~  244 (612)
                      +.++++|||-...+  +-....+++++|++ +.++.-+|+|-+++..++.+.+|.|.-|..
T Consensus        94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          94 LLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             TCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            46999999988743  34556788888865 346889999999999999999999988864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.11  E-value=0.33  Score=48.23  Aligned_cols=28  Identities=32%  Similarity=0.590  Sum_probs=22.5

Q ss_pred             EeCCeEEEEECCCCCcHHHHHHHHHCCCC
Q psy12625         53 FVSKELSVILGPSGSGKTKLLDILAGYRR   81 (612)
Q Consensus        53 i~~Ge~~aI~GpsGsGKSTLL~~l~g~~~   81 (612)
                      .+++.+ ..+||+|+|||-|.|.||....
T Consensus        66 ~p~~ni-LfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSNI-LLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCCE-EEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcce-eeeCCCCccHHHHHHHHHhhcc
Confidence            456654 4669999999999999998654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.26  E-value=0.31  Score=47.29  Aligned_cols=19  Identities=42%  Similarity=0.709  Sum_probs=17.4

Q ss_pred             CCeEEEEECCCCCcHHHHH
Q psy12625         55 SKELSVILGPSGSGKTKLL   73 (612)
Q Consensus        55 ~Ge~~aI~GpsGsGKSTLL   73 (612)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6788899999999999996

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.48  E-value=0.52  Score=39.96  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy12625        185 SNPSIIFLDEPTTGLDYLNATNLVKLLRDMAHQGTMIICTLHQPS  229 (612)
Q Consensus       185 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~  229 (612)
                      .++++++.||-== ++    ..+.+.+..+++.|++|++.-=|-+
T Consensus        78 ~~~dvI~IDE~QF-f~----d~i~~~~~~~~~~g~~Viv~GLd~D  117 (139)
T d2b8ta1          78 DETKVIGIDEVQF-FD----DRICEVANILAENGFVVIISGLDKN  117 (139)
T ss_dssp             TTCCEEEECSGGG-SC----THHHHHHHHHHHTTCEEEEECCSBC
T ss_pred             cCcCEEEechhhh-cc----hhHHHHHHHHHhcCceEEEEEeccc
Confidence            3788999999722 22    2355666666778999999987643