Psyllid ID: psy12631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESLSVFLDGGKLS
Secondary Structure (PSIPRED)
ccEEEEEcccccccccHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEcHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHEccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccHcEcccccccc
Coil and Loop (DISEMBL)
MAINVYStnvtsenlsrhdMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSknrrakgygylgIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESLSVFLDGGKLS
Flexible Loop (DISEMBL)
MAINVYSTnvtsenlsrhDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKaqqdsknrRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESlsvfldggkls
Low Complexity Region (SEG)
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYlpthllvllglvdnrylGIWTAWHFVAVIYHRIRIGTYlptrthllvllglvdnrlgYTVESLSVFLDGGKLS
Disordered region (IsUnstruct)
**************LSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESLSVFLD*****
Disordered Region (DISOPRED)
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRI*********************************LDGG***
Disordered Region (DISEMBL)
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESLSVFLDGGKLS
Disordered Region (DISPRO)
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRLGYTVESLSVFLDGGKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q61166	268	Microtubule-associated pr	yes	N/A	0.410	0.283	0.6	3e-21
Q15691	268	Microtubule-associated pr	yes	N/A	0.410	0.283	0.6	3e-21
Q66HR2	268	Microtubule-associated pr	yes	N/A	0.410	0.283	0.6	3e-21
Q5R7Z5	268	Microtubule-associated pr	no	N/A	0.410	0.283	0.6	3e-21
Q5XIT1	281	Microtubule-associated pr	no	N/A	0.372	0.245	0.652	3e-21
Q6PER3	281	Microtubule-associated pr	no	N/A	0.372	0.245	0.652	3e-21
Q5ZLC7	258	Microtubule-associated pr	no	N/A	0.410	0.294	0.587	3e-21
Q9UPY8	281	Microtubule-associated pr	no	N/A	0.372	0.245	0.652	3e-21
Q6V291	263	Microtubule-associated pr	N/A	N/A	0.410	0.288	0.587	3e-21
Q66T82	263	Microtubule-associated pr	N/A	N/A	0.410	0.288	0.587	4e-21

>sp|Q61166|MARE1_MOUSE Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes (By similarity). May play a role in cell migration.
Mus musculus (taxid: 10090)

>sp|Q15691|MARE1_HUMAN Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Homo sapiens (taxid: 9606)

>sp|Q66HR2|MARE1_RAT Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q5R7Z5|MARE1_PONAB Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Pongo abelii (taxid: 9601)

>sp|Q5XIT1|MARE3_RAT Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 3/72 (4%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query: 58 IFILRNLLHTFV 69
          +     L H ++
Sbjct: 61 VKFQAKLEHEYI 72

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q6PER3|MARE3_MOUSE Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 3/72 (4%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query: 58 IFILRNLLHTFV 69
          +     L H ++
Sbjct: 61 VKFQAKLEHEYI 72

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Mus musculus (taxid: 10090)

>sp|Q5ZLC7|MARE1_CHICK Microtubule-associated protein RP/EB family member 1 OS=Gallus gallus GN=MAPRE1 PE=2 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  +L+A
Sbjct: 61 VKFQAKLEHEYIQNFKVLQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes.

Gallus gallus (taxid: 9031)

>sp|Q9UPY8|MARE3_HUMAN Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 3/72 (4%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query: 58 IFILRNLLHTFV 69
          +     L H ++
Sbjct: 61 VKFQAKLEHEYI 72

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. May play a role in cell migration.

Homo sapiens (taxid: 9606)

>sp|Q6V291|MARE1_COTCO Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix GN=MAPRE1 PE=2 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  +L+A
Sbjct: 61 VKFQAKLEHEYIQNFKVLQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes.

Coturnix coturnix (taxid: 9091)

>sp|Q66T82|MARE1_COTJA Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKK 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  +L+A
Sbjct: 61 VKFQAKLEHEYIQNFKVLQA 80

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes.

Coturnix coturnix japonica (taxid: 93934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
270010337	356	hypothetical protein TcasGA2_TC009721 [T	0.410	0.213	0.7	5e-24
91086477	275	PREDICTED: similar to microtubule-associ	0.410	0.276	0.7	7e-24
389608703	273	microtubule binding protein, putative [P	0.410	0.278	0.687	1e-23
357628672	341	hypothetical protein KGM_05590 [Danaus p	0.410	0.222	0.687	2e-23
114051229	273	microtubule-associated protein RP/EB fam	0.410	0.278	0.687	3e-23
345484834	347	PREDICTED: microtubule-associated protei	0.4	0.213	0.675	4e-23
239788557	273	ACYPI005363 [Acyrthosiphon pisum]	0.4	0.271	0.675	5e-23
19921706	291	Eb1, isoform B [Drosophila melanogaster]	0.410	0.261	0.662	8e-23
284515820	318	MIP15933p [Drosophila melanogaster]	0.410	0.238	0.662	8e-23
45552459	290	Eb1, isoform E [Drosophila melanogaster]	0.410	0.262	0.662	9e-23

>gi|270010337|gb|EFA06785.1| hypothetical protein TcasGA2_TC009721 [Tribolium castaneum]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYSTNVTSENLSRHDML WVN+ LQSSFGKIEELC+GAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNECLQSSFGKIEELCTGAAYCQFMDMLFPGSVQLKR 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +    NL H ++ +  IL+A
Sbjct: 61 VKFRTNLEHEYIQNFKILQA 80

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086477|ref|XP_975920.1| PREDICTED: similar to microtubule-associated protein RP/EB family member 3 isoform 3 [Tribolium castaneum]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYSTNVTSENLSRHDML WVN+ LQSSFGKIEELC+GAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNECLQSSFGKIEELCTGAAYCQFMDMLFPGSVQLKR 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +    NL H ++ +  IL+A
Sbjct: 61 VKFRTNLEHEYIQNFKILQA 80

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608703|dbj|BAM17961.1| microtubule binding protein, putative [Papilio xuthus]

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 64/80 (80%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
          MA+NVYSTNVTSENLSRHDML WVND LQS+F KIEELC+GAAYCQFMDMLFPG   I  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPIKR 60

Query: 61 LR---NLLHTFVLHL-ILKA 76
          ++   NL H ++ +  IL+A
Sbjct: 61 IKFKTNLEHEYIQNFKILQA 80

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628672|gb|EHJ77927.1| hypothetical protein KGM_05590 [Danaus plexippus]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 63/80 (78%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYSTNVTSENLSRHDML WVND LQS+F KIEELC+GAAYCQFMDMLFPG   +  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          I    NL H ++ +  IL+A
Sbjct: 61 IKFKTNLEHEYIQNFKILQA 80

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051229|ref|NP_001040321.1| microtubule-associated protein RP/EB family member 3 [Bombyx mori] gi|87248487|gb|ABD36296.1| microtubule-associated protein RP/EB family member 3 [Bombyx mori]

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 63/80 (78%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYSTNVTSENLSRHDML WVND LQS+F KIEELC+GAAYCQFMDMLFPG   +  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 60

Query: 58 IFILRNLLHTFVLHL-ILKA 76
          I    NL H ++ +  IL+A
Sbjct: 61 IKFKTNLEHEYIQNFKILQA 80

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484834|ref|XP_001600969.2| PREDICTED: microtubule-associated protein RP/EB family member 1-like isoform 2 [Nasonia vitripennis]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVY+TNVT+ENLSRHDML WVND LQSSF KIEELC+GAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYATNVTTENLSRHDMLAWVNDCLQSSFAKIEELCTGAAYCQFMDMLFPGSVPLKR 60

Query: 58 IFILRNLLHTFVLHLIL 74
          +    NL H ++ +  L
Sbjct: 61 VKFKTNLEHEYIQNFKL 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788557|dbj|BAH70953.1| ACYPI005363 [Acyrthosiphon pisum]

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MAINVYSTNVTS+NLSRHDML WVNDTL +SF KIEELCSGAAYCQFMDMLFPG   +  
Sbjct: 1  MAINVYSTNVTSDNLSRHDMLAWVNDTLSASFTKIEELCSGAAYCQFMDMLFPGSVQMKR 60

Query: 58 IFILRNLLHTFVLHLIL 74
          +    NL H ++ +  +
Sbjct: 61 VKFRTNLEHEYIQNFKI 77

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921706|ref|NP_610233.1| Eb1, isoform B [Drosophila melanogaster] gi|24586069|ref|NP_724496.1| Eb1, isoform A [Drosophila melanogaster] gi|24586072|ref|NP_724497.1| Eb1, isoform D [Drosophila melanogaster] gi|442622522|ref|NP_001260734.1| Eb1, isoform G [Drosophila melanogaster] gi|17945913|gb|AAL49002.1| RE41364p [Drosophila melanogaster] gi|21645126|gb|AAM70826.1| Eb1, isoform A [Drosophila melanogaster] gi|21645127|gb|AAM70827.1| Eb1, isoform B [Drosophila melanogaster] gi|21645128|gb|AAM70828.1| Eb1, isoform D [Drosophila melanogaster] gi|220949000|gb|ACL87043.1| Eb1-PA [synthetic construct] gi|220958162|gb|ACL91624.1| Eb1-PA [synthetic construct] gi|440214118|gb|AGB93267.1| Eb1, isoform G [Drosophila melanogaster]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
          MA+NVYSTNVTSENLSRHDML WVND LQS F KIEELC+GAAYCQFMDMLFP    +  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDMLFPNSVPVKR 60

Query: 61 LR---NLLHTFVLHL-ILKA 76
          ++   NL H ++ +  IL+A
Sbjct: 61 VKFRTNLEHEYIQNFKILQA 80

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284515820|gb|ADB91417.1| MIP15933p [Drosophila melanogaster]

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 1   MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
           MA+NVYSTNVTSENLSRHDML WVND LQS F KIEELC+GAAYCQFMDMLFP    +  
Sbjct: 28  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDMLFPNSVPVKR 87

Query: 61  LR---NLLHTFVLHL-ILKA 76
           ++   NL H ++ +  IL+A
Sbjct: 88  VKFRTNLEHEYIQNFKILQA 107

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552459|ref|NP_995752.1| Eb1, isoform E [Drosophila melanogaster] gi|4689344|gb|AAD27859.1|AF132560_1 LD08743p [Drosophila melanogaster] gi|45445430|gb|AAS64780.1| Eb1, isoform E [Drosophila melanogaster] gi|220950444|gb|ACL87765.1| Eb1-PE [synthetic construct]

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
          MA+NVYSTNVTSENLSRHDML WVND LQS F KIEELC+GAAYCQFMDMLFP    +  
Sbjct: 1  MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDMLFPNSVPVKR 60

Query: 61 LR---NLLHTFVLHL-ILKA 76
          ++   NL H ++ +  IL+A
Sbjct: 61 VKFRTNLEHEYIQNFKILQA 80

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
FB|FBgn0027066	297	Eb1 "Eb1" [Drosophila melanoga	0.410	0.255	0.662	2.1e-22
UNIPROTKB|Q0VC55	266	MAPRE3 "Uncharacterized protei	0.410	0.285	0.612	1.3e-20
UNIPROTKB|E2RDE0	281	MAPRE3 "Uncharacterized protei	0.410	0.270	0.612	1.3e-20
UNIPROTKB|C9JB30	218	MAPRE3 "Microtubule-associated	0.410	0.348	0.612	1.3e-20
UNIPROTKB|Q9UPY8	281	MAPRE3 "Microtubule-associated	0.410	0.270	0.612	1.3e-20
UNIPROTKB|I3LQA8	281	MAPRE3 "Uncharacterized protei	0.410	0.270	0.612	1.3e-20
MGI|MGI:2140967	281	Mapre3 "microtubule-associated	0.410	0.270	0.612	1.3e-20
RGD|1359297	281	Mapre3 "microtubule-associated	0.410	0.270	0.612	1.3e-20
ZFIN|ZDB-GENE-050913-88	259	mapre3a "microtubule-associate	0.410	0.293	0.612	2.1e-20
UNIPROTKB|F1MHV5	268	LOC100848087 "Uncharacterized	0.410	0.283	0.6	3.5e-20

FB|FBgn0027066 Eb1 "Eb1" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 53/80 (66%), Positives = 62/80 (77%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
             MA+NVYSTNVTSENLSRHDML WVND LQS F KIEELC+GAAYCQFMDMLFP    +  
Sbjct:     1 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDMLFPNSVPVKR 60

Query:    61 LR---NLLHTFVLHL-ILKA 76
             ++   NL H ++ +  IL+A
Sbjct:    61 VKFRTNLEHEYIQNFKILQA 80

GO:0005875 "microtubule associated complex" evidence=ISS;IDA;TAS

GO:0007017 "microtubule-based process" evidence=ISS;TAS

GO:0008017 "microtubule binding" evidence=IEA;ISS;TAS

GO:0005874 "microtubule" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP;IDA

GO:0051225 "spindle assembly" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IDA

GO:0040001 "establishment of mitotic spindle localization" evidence=TAS

GO:0007052 "mitotic spindle organization" evidence=TAS

GO:0005876 "spindle microtubule" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IMP

GO:0030951 "establishment or maintenance of microtubule cytoskeleton polarity" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IDA

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

UNIPROTKB|Q0VC55 MAPRE3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

UNIPROTKB|E2RDE0 MAPRE3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

UNIPROTKB|C9JB30 MAPRE3 "Microtubule-associated protein RP/EB family member 3" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9UPY8 MAPRE3 "Microtubule-associated protein RP/EB family member 3" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005874 "microtubule" evidence=ISS

GO:0007049 "cell cycle" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|I3LQA8 MAPRE3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

MGI|MGI:2140967 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IEA

GO:0008017 "microtubule binding" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|1359297 Mapre3 "microtubule-associated protein, RP/EB family, member 3" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  +L+A
Sbjct:    61 VKFQAKLEHEYIHNFKVLQA 80

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA;ISO

GO:0030496 "midbody" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

ZFIN|ZDB-GENE-050913-88 mapre3a "microtubule-associated protein, RP/EB family, member 3a" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VT ENLSRHDML WVND+LQ ++ KIE+LCSGAAYCQFM+MLFPG   L  
Sbjct:     1 MAVNVYSTSVTIENLSRHDMLAWVNDSLQLTYTKIEQLCSGAAYCQFMEMLFPGCILLKK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H F+ +  +L+A
Sbjct:    61 VKFQAKLEHEFIHNFKVLQA 80

GO:0008017 "microtubule binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MHV5 LOC100848087 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/80 (60%), Positives = 61/80 (76%)

Query:     1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
             MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct:     1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60

Query:    58 IFILRNLLHTFVLHL-ILKA 76
             +     L H ++ +  IL+A
Sbjct:    61 VKFQAKLEHEYIQNFKILQA 80

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0035372 "protein localization to microtubule" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031253 "cell projection membrane" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15691	MARE1_HUMAN	No assigned EC number	0.6	0.4108	0.2835	yes	N/A
Q6P848	MARE1_XENTR	No assigned EC number	0.5625	0.4108	0.2825	yes	N/A
Q61166	MARE1_MOUSE	No assigned EC number	0.6	0.4108	0.2835	yes	N/A
Q66HR2	MARE1_RAT	No assigned EC number	0.6	0.4108	0.2835	yes	N/A
Q3ZBD9	MARE1_BOVIN	No assigned EC number	0.6	0.4108	0.2835	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
COG5217	342	COG5217, BIM1, Microtubule-binding protein involve	0.002
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	0.003

>gnl|CDD|227542 COG5217, BIM1, Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 16 SRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLF 52
          SR ++L W N  ++    +IE+   G A  Q  D ++
Sbjct: 8  SREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY 44

Length = 342

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 17 RHDMLHWVNDTLQSSFGKI-----EELCSGAAYCQFMDMLFPGL 55
             +L W+N+ L    G       E+L  G A C  ++ L PGL
Sbjct: 1  EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGL 44

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3000|consensus	295		100.0
COG5217	342	BIM1 Microtubule-binding protein involved in cell	99.96
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.28
cd00014	107	CH Calponin homology domain; actin-binding domain	99.18
smart00033	103	CH Calponin homology domain. Actin binding domains	98.79
COG5217	342	BIM1 Microtubule-binding protein involved in cell	98.16
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	97.12
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	96.34
KOG2046|consensus	193		94.16
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	83.33
KOG0046|consensus	627		80.21

>KOG3000|consensus

Probab=100.00  E-value=7.3e-49  Score=345.89  Aligned_cols=130  Identities=37%  Similarity=0.556  Sum_probs=125.5

Q ss_pred             CceeeEecCCCCCcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHh
Q psy12631          1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQ   77 (185)
Q Consensus         1 mavNV~~t~~~~~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~   77 (185)
                      ||+||+.|.+++.++||.|+|+|+|++|+++++||||||||||||||||++||++|||+   |+|+.||||++|||+||.
T Consensus         1 ~a~nv~~~~~s~~~~sR~E~laW~N~~l~~n~~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~   80 (295)
T KOG3000|consen    1 MAVNVYATVVSTENESRLEILAWINDLLQLNLTKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQT   80 (295)
T ss_pred             CceeeeeecccccccchHHHHHHHHhhhhcchhhhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999997   999999999999999998


Q ss_pred             hhhhhhhccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         78 QDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        78 af~Kn~i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                      +                         |.++||++.|||++|+||+|||||||+||||+|||+| |.. .+||++++|+++
T Consensus        81 ~-------------------------f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~-~~g-~~yd~~~~R~~~  133 (295)
T KOG3000|consen   81 C-------------------------FNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDAN-YGG-KGYDALARREGI  133 (295)
T ss_pred             H-------------------------HHhcCCcccccHHHHhcccccchHHHHHHHHHHhhcc-CCc-cccCHHHHhhcc
Confidence            7                         6788999999999999999999999999999999995 444 999999999999

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.96  E-value=1.3e-30  Score=229.89  Aligned_cols=117  Identities=18%  Similarity=0.074  Sum_probs=108.6

Q ss_pred             CcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      -..||.|||.|+|-.+.+++++||+||+|+|||||+|+|| +++||+   |++..||+|..|+||||.+           
T Consensus         5 l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~dsiY-~Dlp~~~V~f~~~aey~~~~n~kILq~~-----------   72 (342)
T COG5217           5 LVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY-VDLPDSLVRFPWIAEYKHPGNGKILQLL-----------   72 (342)
T ss_pred             hhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHHHHh-ccCcHhhccccchhheecCCchhHHHHH-----------
Confidence            4569999999999999999999999999999999999999 779997   9999999999999999997           


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                                    |.++||++.+.|++||+|+|||||||+||+|+||+.+-  ..-.||+.++|.+-
T Consensus        73 --------------Fs~~Gidk~v~v~~lvrck~qdnLeflQwlk~hWvr~~--~~~~yd~~arr~~r  124 (342)
T COG5217          73 --------------FSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVRNL--GHISYDRNARRLGR  124 (342)
T ss_pred             --------------HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCccChhHHhcCC
Confidence                          66889999999999999999999999999999999943  45689999999765

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=99.28  E-value=3.2e-11  Score=87.55  Aligned_cols=97  Identities=21%  Similarity=0.302  Sum_probs=80.3

Q ss_pred             HHHHHHHhHHHhcC-----Ccchh-hhcCCCchHHHhhHhhcCCcccee-ccC--CCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         17 RHDMLHWVNDTLQS-----SFGKI-EELCSGAAYCQFMDMLFPGLYSIF-ILR--NLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        17 R~ELL~WiN~~L~~-----~~tKI-Eel~tGAaYCQlmD~lfPg~Ipmk-Fna--~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      +++|+.|||+.|+.     .++.+ +++.+|.++|++++.+.|+.++.+ .++  +...+.++|..++-+++++      
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~------   74 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEK------   74 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHH------
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHH------
Confidence            46899999999964     56777 899999999999999999999887 633  3788999999998876432      


Q ss_pred             CCccccchhhhhhHHHHhhhccccccchhhhh-cccccchHHHHHHHHHHH
Q psy12631         88 YGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLV-LLGLVDNRYLGIWTAWHF  137 (185)
Q Consensus        88 ~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLv-kg~~qDNleflqW~k~f~  137 (185)
                                        .+|++..+..+.|+ ++..+..+.|+.++..+|
T Consensus        75 ------------------~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~  107 (108)
T PF00307_consen   75 ------------------KLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYF  107 (108)
T ss_dssp             ------------------HTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred             ------------------HcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHH
Confidence                              26777788999999 999999999999998877

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.18  E-value=1.1e-10  Score=84.78  Aligned_cols=97  Identities=19%  Similarity=0.160  Sum_probs=83.6

Q ss_pred             cHHHHHHHhHHHhcCCcc-hh----hhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         16 SRHDMLHWVNDTLQSSFG-KI----EELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~t-KI----Eel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      .+++++.|+|+.+..... .+    +++.+|.++|+|++.++|+.++.. ..+....+.++|.....++.+         
T Consensus         2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~---------   72 (107)
T cd00014           2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAE---------   72 (107)
T ss_pred             hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHH---------
Confidence            468999999999998876 55    789999999999999999999886 458889999999999988755         


Q ss_pred             ccccchhhhhhHHHHhhhccccc-cchhhhh-cccccchHHHHHHHHHHH
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTY-LPTHLLV-LLGLVDNRYLGIWTAWHF  137 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~-ipV~kLv-kg~~qDNleflqW~k~f~  137 (185)
                                      ++|++.. +..+.|+ ++.....+.++.++..+|
T Consensus        73 ----------------~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~  106 (107)
T cd00014          73 ----------------KLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF  106 (107)
T ss_pred             ----------------HcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence                            3556666 8889999 999999999999988776

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=98.79  E-value=2.1e-08  Score=71.99  Aligned_cols=90  Identities=18%  Similarity=0.113  Sum_probs=70.0

Q ss_pred             cHHHHHHHhHHHhcCCc-ch----hhhcCCCchHHHhhHhhcCCcccee-c-cCCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         16 SRHDMLHWVNDTLQSSF-GK----IEELCSGAAYCQFMDMLFPGLYSIF-I-LRNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~-tK----IEel~tGAaYCQlmD~lfPg~Ipmk-F-na~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      ++.+++.|+|+.+.... ..    .+++++|.++|++++.++|+.++.+ . .++...+.++|.....++.++.|+    
T Consensus         1 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~----   76 (103)
T smart00033        1 QEKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGG----   76 (103)
T ss_pred             ChHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCC----
Confidence            36789999999999753 22    5689999999999999999999986 3 477789999999999887664432    


Q ss_pred             CccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHH
Q psy12631         89 GYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLG  130 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNlefl  130 (185)
                                          ....+..+.|+.|+ .+-+.+.
T Consensus        77 --------------------~~~~~~~~Dl~~~~-k~~~~v~   97 (103)
T smart00033       77 --------------------KLVLFEPEDLVEGN-KLILGVI   97 (103)
T ss_pred             --------------------eeeccCHHHHhhcc-hHHHHHH
Confidence                                13467788888886 5555443

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.16  E-value=2.2e-06  Score=77.01  Aligned_cols=88  Identities=18%  Similarity=0.322  Sum_probs=76.6

Q ss_pred             CcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCccceec--cCCCHHHHHHHHHHHHhhhhhhhhccCCCc
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI--LRNLLHTFVLHLILKAQQDSKNRRAKGYGY   90 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~IpmkF--na~~e~E~i~NfKlLQ~af~Kn~i~k~~~~   90 (185)
                      ...|++|++.|+-. +..-++.++++++|++.|..+-.+| .+.|.+|  ++..+++|+.|.+..|+.            
T Consensus       125 ~p~~tr~~~~~~rs-~~~p~sa~r~~s~G~~s~~sl~t~h-ss~~~N~v~~ta~t~~~Lra~qa~Qe~------------  190 (342)
T COG5217         125 TPKSTRELIEWIRS-LGIPISAIRELSKGVASCKSLSTIH-SSFPQNFVKNTAGTHDYLRAMQACQEF------------  190 (342)
T ss_pred             CcchHHHHHhhhhh-cCCchhhhhhhccCcccchhhhhhh-cccccccccCcchhHHHHHHHHHHHHH------------
Confidence            35789999999987 8888999999999999999988887 5577664  677889999999999986            


Q ss_pred             cccchhhhhhHHHHhhhccccccchhhhhcccccchH
Q psy12631         91 LGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNR  127 (185)
Q Consensus        91 ~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNl  127 (185)
                                   +..+.+..+.|++.|+++++++-+
T Consensus       191 -------------igSln~~ly~~~~t~~~le~er~f  214 (342)
T COG5217         191 -------------IGSLNIKLYFPVDTLVKLEMERAF  214 (342)
T ss_pred             -------------hhccceeeeeeccccceeeeHHHH
Confidence                         567888999999999999999843

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=97.12  E-value=0.0011  Score=54.22  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             HHHHhHHHhcCC--cchh-hhcCCCchHHHhhHhhcCCcccee-c-cCCCHHHHHHHHHHH-HhhhhhhhhccCCCcccc
Q psy12631         20 MLHWVNDTLQSS--FGKI-EELCSGAAYCQFMDMLFPGLYSIF-I-LRNLLHTFVLHLILK-AQQDSKNRRAKGYGYLGI   93 (185)
Q Consensus        20 LL~WiN~~L~~~--~tKI-Eel~tGAaYCQlmD~lfPg~Ipmk-F-na~~e~E~i~NfKlL-Q~af~Kn~i~k~~~~~~~   93 (185)
                      |+.||++ |++.  ...+ .++++|...+.|+...||..|.|+ | ++..-.--+.||..| +..|+|+|+.        
T Consensus         1 l~~WL~~-l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~--------   71 (158)
T PF06294_consen    1 LLKWLQS-LDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK--------   71 (158)
T ss_dssp             HHHHHHH-S--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT----------
T ss_pred             ChHHHhc-CCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC--------
Confidence            6899999 5544  3345 499999999999999999999998 6 456666799999999 9888877653        


Q ss_pred             chhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHH
Q psy12631         94 WTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHF  137 (185)
Q Consensus        94 ~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~  137 (185)
                                     ++ .-.++.++.|+--.=-.++.=++.+.
T Consensus        72 ---------------l~-~~~i~~i~~~~~Gaae~lL~~L~~~l   99 (158)
T PF06294_consen   72 ---------------LD-KEDIEGIINCKPGAAESLLYQLYTKL   99 (158)
T ss_dssp             ------------------HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred             ---------------CC-HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                           11 13567888888766666666666555

; PDB: 2EE7_A.

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=96.34  E-value=0.0028  Score=47.24  Aligned_cols=46  Identities=17%  Similarity=0.267  Sum_probs=38.7

Q ss_pred             hhcCCCchHHHhhHhhcCCcccee---cc-CCCHHHHHHHHHHHHhhhhh
Q psy12631         36 EELCSGAAYCQFMDMLFPGLYSIF---IL-RNLLHTFVLHLILKAQQDSK   81 (185)
Q Consensus        36 Eel~tGAaYCQlmD~lfPg~Ipmk---Fn-a~~e~E~i~NfKlLQ~af~K   81 (185)
                      .++++|.+.|++++..+|+.||++   +. .-+..+.+.|..+|++.-++
T Consensus        18 ~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~   67 (85)
T PF11971_consen   18 QDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQS   67 (85)
T ss_pred             hhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHH
Confidence            356999999999999999999997   43 44677899999999987543

>KOG2046|consensus

Probab=94.16  E-value=0.12  Score=44.29  Aligned_cols=70  Identities=11%  Similarity=0.288  Sum_probs=51.1

Q ss_pred             HHHHHHHhHHHhcCCcc----hhhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         17 RHDMLHWVNDTLQSSFG----KIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~t----KIEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      ..||+.||-.++.+...    =.+.|-+|...|.|++.|+|+.++....++...-...|..=+..|..+.|+.+
T Consensus        27 ~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~  100 (193)
T KOG2046|consen   27 EKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKKYGVPE  100 (193)
T ss_pred             HHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHhcCCCh
Confidence            47899999996333222    24679999999999999999877765667766666666666667767666654

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=83.33  E-value=0.89  Score=44.63  Aligned_cols=61  Identities=18%  Similarity=0.282  Sum_probs=38.7

Q ss_pred             HHHHHhHHH-hcCCcchhhhcCCCchHHHhhHhhcCCccceeccC----CCHHH---HHHHHHHHHhhh
Q psy12631         19 DMLHWVNDT-LQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILR----NLLHT---FVLHLILKAQQD   79 (185)
Q Consensus        19 ELL~WiN~~-L~~~~tKIEel~tGAaYCQlmD~lfPg~IpmkFna----~~e~E---~i~NfKlLQ~af   79 (185)
                      -|+.|||.. +......+++|++|++.-++|..|=|.-+.-.|..    .....   -++|+|.|=..+
T Consensus        11 ~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i   79 (713)
T PF05622_consen   11 SLVTWVQTFNLSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNI   79 (713)
T ss_dssp             HHHHHHTT---SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence            489999984 34457789999999999999999988754422211    11111   579998886554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0046|consensus

Probab=80.21  E-value=2.5  Score=41.58  Aligned_cols=72  Identities=15%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CcccHHHHHHHhHHHhcCC-----cchhh--hcCCCchHHHhhHhhcCCcccee--ccCCCHHHHHHHHHHHHhhhhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQSS-----FGKIE--ELCSGAAYCQFMDMLFPGLYSIF--ILRNLLHTFVLHLILKAQQDSKNR   83 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~-----~tKIE--el~tGAaYCQlmD~lfPg~Ipmk--Fna~~e~E~i~NfKlLQ~af~Kn~   83 (185)
                      ..++-.++++|+|+.++-.     +....  .+++|...--++|+|-|+.|+-+  =.-+++.|-..|-|..=.+=+|.|
T Consensus       507 ~~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~LV~~G~t~EdK~~NAkYaIS~ARKiG  586 (627)
T KOG0046|consen  507 KDITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSLVTSGNTDEEKLLNAKYAISVARKLG  586 (627)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhhccCCCChhhhhhcchhhHhHHHhhC
Confidence            3577899999999999743     33222  38899999999999999999976  467799999999999887766665


Q ss_pred             h
Q psy12631         84 R   84 (185)
Q Consensus        84 i   84 (185)
                      .
T Consensus       587 a  587 (627)
T KOG0046|consen  587 A  587 (627)
T ss_pred             c
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
2r8u_A	268	Structure Of Fragment Of Human End-Binding Protein		2e-22
3co1_A	132	Crystal Structure Of Microtubule Binding Domain Of		5e-22
1wyo_A	159	Solution Structure Of The Ch Domain Of Human Microt		6e-22
1pa7_A	130	Crystal Structure Of Amino-Terminal Microtubule Bin		1e-21
1vka_A	153	Southeast Collaboratory For Structural Genomics: Hy		3e-21
2qjz_A	123	Structural Basis Of Microtubule Plus End Tracking B		6e-14
1v5k_A	115	Solution Structure Of The Ch Domain From Mouse Eb-1		9e-14
2qjx_A	127	Structural Basis Of Microtubule Plus End Tracking B		5e-04

>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1) Containing The N-Terminal Domain At 1.35 A Resolution Length = 268

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human Eb3 Length = 132

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 3  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 56

>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule- Associated Protein RpEB FAMILY MEMBER 3 Length = 159

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 8  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 61

>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding Domain Of Eb1 Length = 130

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYS 57
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 58 IFILRNLLHTFVLHL-ILKA 76
          +     L H ++ +  IL+A
Sbjct: 61 VKFQAKLEHEYIQNFKILQA 80

>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment Length = 153

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 2  AINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSI 58
          A+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  +
Sbjct: 15 AVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKV 74
Query: 59 FILRNLLHTFVLHL-ILKA 76
               L H ++ +  IL+A
Sbjct: 75 KFQAKLEHEYIQNFKILQA 93

>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 123

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSIFILRNLLHTF 68
          S+NLSRHD L W+N++LQ +  KIE+LCSGAAYCQF D LFPG   L  +     L H +
Sbjct: 2  SDNLSRHDXLAWINESLQLNLTKIEQLCSGAAYCQFXDXLFPGSIALKKVKFQAKLEHEY 61
Query: 69 VLHL-ILKA 76
          + +  IL+A
Sbjct: 62 IQNFKILQA 70

>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1 Length = 115

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG---LYSIFILRNLLHTF 68
          S    RHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG   L  +     L H +
Sbjct: 5  SSGQRRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEY 64
Query: 69 VLHL-ILKA 76
          + +  IL+A
Sbjct: 65 IQNFKILQA 73

>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 127

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 16 SRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGL 55
          SR ++L W+N  L  ++ KIEE  +GAAYCQ  D ++  L
Sbjct: 11 SRTELLTWLNGLLNLNYKKIEECGTGAAYCQIXDSIYGDL 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
2r8u_A	268	Microtubule-associated protein RP/EB family member	2e-29
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	6e-28
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	9e-21
2qjz_A	123	Microtubule-associated protein RP/EB family member	1e-19
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	1e-17

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Length = 268

 Score =  108 bits (271), Expect = 2e-29
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTS+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 1  MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 54

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 159

 Score =  101 bits (253), Expect = 6e-28
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 1  MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          MA+NVYST+VTSENLSRHDML WVND+L  ++ KIE+LCSGAAYCQFMDMLFPG
Sbjct: 8  MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPG 61

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Length = 145

 Score = 82.8 bits (204), Expect = 9e-21
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 11 TSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGL 55
             + SR ++L W+N        +IE+   G A  Q  D ++  +
Sbjct: 2  AMGSESRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQDI 46

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Length = 123

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          S+NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 2  SDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 44

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Length = 127

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 7  STNVTS-ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI 60
           +++++    SR ++L W+N  L  ++ KIEE  +GAAYCQ MD ++  L    +
Sbjct: 1  GSHMSAGIGESRTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIYGDLPMNRV 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2r8u_A	268	Microtubule-associated protein RP/EB family member	100.0
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	100.0
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	100.0
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	100.0
2qjz_A	123	Microtubule-associated protein RP/EB family member	100.0
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	98.44
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	98.34
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	98.27
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	98.27
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	98.08
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	98.01
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	98.01
1wyl_A	116	NEDD9 interacting protein with calponin homology a	97.97
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	97.93
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	97.9
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	97.9
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	97.83
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	97.81
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	97.77
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	97.76
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	97.69
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	97.67
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	97.59
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	97.51
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	97.44
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	97.42
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	97.42
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	97.41
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	97.38
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	97.37
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	97.34
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	97.3
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	97.2
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	97.08
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	97.06
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	96.96
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	96.77
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	96.68
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	96.61
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	96.59
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	96.58
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	96.5
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	96.09
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	96.02
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	95.99
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	95.88
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	94.95
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	94.67
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	94.6
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	92.37
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	91.11

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=100.00  E-value=4.2e-56  Score=386.28  Aligned_cols=133  Identities=41%  Similarity=0.654  Sum_probs=122.3

Q ss_pred             CceeeEecCCCCCcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHh
Q psy12631          1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQ   77 (185)
Q Consensus         1 mavNV~~t~~~~~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~   77 (185)
                      ||+||++|+++++++||+|||+|||++|+++|+||||||||||||||||+||||+|||+   |+|++||||++|||+||+
T Consensus         1 ma~nv~~t~~~~~~~sR~elL~WiN~~L~~~~~kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~   80 (268)
T 2r8u_A            1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQA   80 (268)
T ss_dssp             CCCCCCTTSCCCCCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHH
T ss_pred             CceeEecccCcccccCHHHHHHHHHHHhcCCcchHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997   999999999999999999


Q ss_pred             hhhhhhhccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         78 QDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        78 af~Kn~i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                      +                         |.+++|+++|||++||||+|||||||+||||+|||+| +.. .+||++++|.++
T Consensus        81 ~-------------------------F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n-~~~-~~Yd~~~~R~g~  133 (268)
T 2r8u_A           81 G-------------------------FKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDAN-YDG-KDYDPVAARQGQ  133 (268)
T ss_dssp             H-------------------------HHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHH-CCC-CCCCHHHHTC--
T ss_pred             H-------------------------HHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHc-CCC-CCCCHHHHhcCC
Confidence            8                         5577788899999999999999999999999999995 443 899999999988


Q ss_pred             eee
Q psy12631        158 LVL  160 (185)
Q Consensus       158 ~~~  160 (185)
                      ...
T Consensus       134 ~~~  136 (268)
T 2r8u_A          134 ETA  136 (268)
T ss_dssp             ---
T ss_pred             CCC
Confidence            663

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-54  Score=353.16  Aligned_cols=133  Identities=44%  Similarity=0.636  Sum_probs=125.4

Q ss_pred             CceeeEecCCCCCcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHh
Q psy12631          1 MAINVYSTNVTSENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQ   77 (185)
Q Consensus         1 mavNV~~t~~~~~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~   77 (185)
                      ||+||+.|+++++..||+|||+|||++|+++|+|||+||+||+||||||+||||+|||+   |+++.|+||++|||+||+
T Consensus         8 ~~~nv~~t~~~~~~~sr~ElL~WIN~~L~~~~~kiE~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~   87 (159)
T 1wyo_A            8 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQA   87 (159)
T ss_dssp             CCCCCCCCSSCCCCCCHHHHHHHHHHHSCCCCSSGGGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHH
T ss_pred             hheeeeeccCCCCchhHHHHHHHHHHHHCCCCchhhhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999996   999999999999999999


Q ss_pred             hhhhhhhccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         78 QDSKNRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        78 af~Kn~i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                      ||                         .++||+++|||++||||+||||+||+||||+|||+| +.. .+|||+++|.++
T Consensus        88 af-------------------------~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n-~~~-~~Yd~~~~R~~~  140 (159)
T 1wyo_A           88 AF-------------------------KKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDAN-YDG-KDYNPLLARQGQ  140 (159)
T ss_dssp             HH-------------------------HHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTT-CCS-CCCCTTGGGCCC
T ss_pred             HH-------------------------HHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHc-CCC-CCCCHHHHhCCC
Confidence            85                         566778899999999999999999999999999995 443 899999999998


Q ss_pred             eee
Q psy12631        158 LVL  160 (185)
Q Consensus       158 ~~~  160 (185)
                      ..+
T Consensus       141 ~~~  143 (159)
T 1wyo_A          141 DVA  143 (159)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            764

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-54  Score=347.02  Aligned_cols=128  Identities=18%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             CcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      ..+||+|||+|||++|+++|+||||||||||||||||+|| |+|||+   |+|+.||||++|||+||++           
T Consensus         4 ~~~SR~eLL~WiN~~L~~n~tkIE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~-----------   71 (145)
T 4abo_I            4 GSESRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQV-----------   71 (145)
T ss_dssp             ---CHHHHHHHHHHHHTCCCCSGGGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHH-----------
T ss_pred             ccccHHHHHHHHHHHcCCCcchHHHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHH-----------
Confidence            4689999999999999999999999999999999999999 889996   9999999999999999998           


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccceeeeeccccCcc
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHLLVLLGLVDNRL  168 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~~~~l~~~~~~~  168 (185)
                                    |++++|+++|||++||||+||||+||+||||+|||+| +. -.+|||+++|+++.+....+...+
T Consensus        72 --------------F~k~~I~k~ipV~kLvKgk~QDNlEFlQWfkkf~d~n-~~-~~~YD~~~~R~g~~~~~~~~~~~s  134 (145)
T 4abo_I           72 --------------FLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQY-YP-GGDYDALARRGNRGPANTRVMNSS  134 (145)
T ss_dssp             --------------HHHHTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHH-CC-SSCCCHHHHHTCC-----------
T ss_pred             --------------HHHcCCCCccCHHHHhccchHhHHHHHHHHHHHHHhc-CC-CCCCCHHHhcCCCCccccCCcccC
Confidence                          5567788899999999999999999999999999995 44 378999999999988775555544

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-52  Score=328.94  Aligned_cols=117  Identities=24%  Similarity=0.309  Sum_probs=106.6

Q ss_pred             CcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      .+.||+|||+|||++|+++|+||||||||||||||||+|| |+|||+   |+|++||||++|||+||++           
T Consensus         8 ~~~sR~elL~WiN~~L~~n~~kiEel~tGaayCQl~d~l~-g~v~l~kVkf~a~~e~e~~~N~k~LQ~~-----------   75 (127)
T 2qjx_A            8 IGESRTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIY-GDLPMNRVKFNATAEYEFQTNYKILQSC-----------   75 (127)
T ss_dssp             ---CHHHHHHHHHHHHTCCCCSGGGGGGSHHHHHHHHHHH-CCSCGGGSCTTCCSHHHHHHHHHHHHHH-----------
T ss_pred             cccCHHHHHHHHHHHHcCCccHHHHccchHHHHHHHhhhc-cccCccccCCCCCCHHHHHHHHHHHHHH-----------
Confidence            6789999999999999999999999999999999999999 569997   9999999999999999998           


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                                    |++++|+++|||++||||+||||+||+||||+|||+| + ..++|||+++|+.+
T Consensus        76 --------------f~k~~I~k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n-~-~g~~YDa~~~R~~~  127 (127)
T 2qjx_A           76 --------------FSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRH-K-DESVYDPDARRKYR  127 (127)
T ss_dssp             --------------HHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHH-C-CSSCCCHHHHTTTC
T ss_pred             --------------HHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHhc-C-CCCCCCHHHhhccC
Confidence                          4567778899999999999999999999999999995 4 35899999999753

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=100.00  E-value=7.6e-52  Score=324.15  Aligned_cols=119  Identities=38%  Similarity=0.581  Sum_probs=110.7

Q ss_pred             CCcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         12 SENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        12 ~~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      ++++||+|||+|||++|+++++|||+||+|||||||||+||||+|||+   |+++.|+||++|||+||+||         
T Consensus         2 ~~~~sr~ElL~WIN~~L~~~~~kiE~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af---------   72 (123)
T 2qjz_A            2 SDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGF---------   72 (123)
T ss_dssp             -CCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHH---------
T ss_pred             CccccHHHHHHHHHHHHCCCCchHHHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHH---------
Confidence            478999999999999999999999999999999999999999999996   99999999999999999985         


Q ss_pred             CccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccce
Q psy12631         89 GYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTHL  157 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~~  157 (185)
                                      .++||+++|||++||||+||||+||+||||+|||+|. . -++|||+++|.++
T Consensus        73 ----------------~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~-~-~~~Yd~~~~R~~~  123 (123)
T 2qjz_A           73 ----------------KRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY-D-GKDYDPVAARQGQ  123 (123)
T ss_dssp             ----------------HHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHC-C-CCCCCHHHHTSCC
T ss_pred             ----------------HHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcC-C-CCCCCHHHhhCcC
Confidence                            5667778999999999999999999999999999954 3 3899999999874

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1.2e-06  Score=66.76  Aligned_cols=100  Identities=16%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             CCCcccHHHHHHHhHHHhcCCc--chhhhc----CCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhh
Q psy12631         11 TSENLSRHDMLHWVNDTLQSSF--GKIEEL----CSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNR   83 (185)
Q Consensus        11 ~~~~~SR~ELL~WiN~~L~~~~--tKIEel----~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~   83 (185)
                      ......+..||.|+|..++- |  .+|...    .+|-|+|.|++.+.|+.|++. ..+   .+-++|.+.   ||+   
T Consensus         5 ~~~~~~~~~LL~W~~~~~~~-y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~---~~~~~n~~~---af~---   74 (119)
T 2d89_A            5 SSGPNASQSLLVWCKEVTKN-YRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP---QDIKENNKK---AYD---   74 (119)
T ss_dssp             SSCCCCHHHHHHHHHHHTTT-CSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT---TCSHHHHHH---HHH---
T ss_pred             CCCCCHHHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc---cCHHHHHHH---HHH---
Confidence            34566788999999999963 2  234444    589999999999999999865 444   345667654   343   


Q ss_pred             hccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         84 RAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        84 i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                         +.+++||++.++.+.++.+.-.|-.-.+.++..||..
T Consensus        75 -------------------~a~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~~  111 (119)
T 2d89_A           75 -------------------GFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAH  111 (119)
T ss_dssp             -------------------HHHHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHHH
Confidence                               1357888899999999988778888888888888766

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=98.34  E-value=2.4e-06  Score=66.15  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=72.0

Q ss_pred             CcccHHHHHHHhHHHhcCCc--chhhh----cCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         13 ENLSRHDMLHWVNDTLQSSF--GKIEE----LCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~--tKIEe----l~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ..-.+..||.|+|..++- |  .+|..    ..+|-|+|.|++.+.|+.|++. .++   .+-++|++.   ||+     
T Consensus         5 ~~~~k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~---af~-----   72 (128)
T 2d87_A            5 SSGIKQMLLDWCRAKTRG-YEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSP---QNRRQNFEV---AFS-----   72 (128)
T ss_dssp             SCCHHHHHHHHHHHHSSS-CTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCS---SCHHHHHHH---HHH-----
T ss_pred             cCCHHHHHHHHHHHHhcc-CCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCc---cCHHHHHHH---HHH-----
Confidence            445678899999999873 2  13444    4789999999999999999865 443   355667554   343     


Q ss_pred             cCCCccccchhhhhhHHHHhh-hccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHR-IRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r-~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                       +.++ +||++.++.+.++.+.-.|-.-.+.++..||..
T Consensus        73 -----------------~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~  110 (128)
T 2d87_A           73 -----------------SAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRC  110 (128)
T ss_dssp             -----------------HHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHH
Confidence                             1233 789999999999998877777777777777665

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=98.27  E-value=3.5e-06  Score=65.11  Aligned_cols=111  Identities=9%  Similarity=0.125  Sum_probs=74.0

Q ss_pred             CcccHHHHHHHhHHHhcCCcc--hhhhc----CCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFG--KIEEL----CSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~t--KIEel----~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ....+..||.|+|..+.- |.  +|..+    .+|-|||.|++.+.|+.|++. +.+.   +-++|++..-+..      
T Consensus         5 ~~s~k~~LL~W~q~~~~~-y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~---~~~~n~~~af~~A------   74 (127)
T 1wyq_A            5 SSGAKDALLLWCQMKTAG-YPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC---NAHYNLQNAFNLA------   74 (127)
T ss_dssp             CCCSTHHHHHHHHHHHHT-SSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSS---CCHHHHHHHHHHH------
T ss_pred             cCCHHHHHHHHHHHHHhc-CCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcC---CHHHHHHHHHHHH------
Confidence            455678899999998752 22  45555    789999999999999999865 5443   3456655543221      


Q ss_pred             cCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccc
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTR  154 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R  154 (185)
                                        -.++||++.++.+.++.+. .|-.-.+.++..||..  +.+.+..+..++|
T Consensus        75 ------------------e~~Lgi~~ll~~eDv~~~~-pDeksimtYvs~l~~~--~~~~~~~~~~~~r  122 (127)
T 1wyq_A           75 ------------------EKELGLTKLLDPEDVNVDQ-PDEKSIITYVATYYHY--FSKMKALAVEGKS  122 (127)
T ss_dssp             ------------------HHTTCCCCCSCTTTSCSSS-CCHHHHHHHHHHHHHH--HHHSSSCCSSCCC
T ss_pred             ------------------HHHcCCCcccCHHHhccCC-CcHHHHHHHHHHHHHH--hhcCCcccccccc
Confidence                              2357888888888876544 5666677777666665  3344444555544

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=98.27  E-value=3e-06  Score=66.03  Aligned_cols=94  Identities=18%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             CCcccHHHHHHHhHHHhcC-----Ccchhh--hcCCCchHHHhhHhhcCCcccee-c-cCC-CHHHHHHHHHHHHhhhhh
Q psy12631         12 SENLSRHDMLHWVNDTLQS-----SFGKIE--ELCSGAAYCQFMDMLFPGLYSIF-I-LRN-LLHTFVLHLILKAQQDSK   81 (185)
Q Consensus        12 ~~~~SR~ELL~WiN~~L~~-----~~tKIE--el~tGAaYCQlmD~lfPg~Ipmk-F-na~-~e~E~i~NfKlLQ~af~K   81 (185)
                      ...++..+||.|+|+.++.     .++...  ++.+|.+||+|++.|-|+.|+.+ . ... ++.|-..|.+..=++   
T Consensus         4 ~~~i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~---   80 (124)
T 1wjo_A            4 GSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSM---   80 (124)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHH---
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHH---
Confidence            4678899999999999984     344443  78899999999999999999877 3 334 688999999986443   


Q ss_pred             hhhccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHH
Q psy12631         82 NRRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLG  130 (185)
Q Consensus        82 n~i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNlefl  130 (185)
                                            -.++|++..+..+.++.++-.=++-|.
T Consensus        81 ----------------------ArklG~~~~l~pEDIve~~pK~ilt~v  107 (124)
T 1wjo_A           81 ----------------------ARRIGARVYALPEDLVEVKPKMVMTVF  107 (124)
T ss_dssp             ----------------------HHHTCCSCCCCHHHHHHTCTTTTTHHH
T ss_pred             ----------------------HHHcCCCcccCHHHHhcCcchhhHHHH
Confidence                                  246777788888889888776666554

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=98.08  E-value=1.4e-05  Score=60.05  Aligned_cols=95  Identities=11%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             cHHHHHHHhHHHhcCCcc--hhhhc----CCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         16 SRHDMLHWVNDTLQSSFG--KIEEL----CSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~t--KIEel----~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      .+..||.|+|..++- |.  +|...    .+|-|+|.|++.+.|+.|++. ..+.   +-.+|++.   ||+        
T Consensus         4 ~k~~LL~W~q~~~~~-y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~---af~--------   68 (109)
T 1bkr_A            4 AKDALLLWCQMKTAG-YPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKS---NAHYNLQN---AFN--------   68 (109)
T ss_dssp             HHHHHHHHHHHHTTT-CTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTT---CHHHHHHH---HHH--------
T ss_pred             HHHHHHHHHHHHHcc-CCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcC---CHHHHHHH---HHH--------
Confidence            467899999998762 32  35554    789999999999999999865 5443   44566544   443        


Q ss_pred             CccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         89 GYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                   +.-.++||++.++.+.++.+. .|-.-.+.++..||..
T Consensus        69 -------------~Ae~~lgi~~ll~~eDv~~~~-pD~ksi~tYvs~~~~~  105 (109)
T 1bkr_A           69 -------------LAEQHLGLTKLLDPEDISVDH-PDEKSIITYVVTYYHY  105 (109)
T ss_dssp             -------------HHHHHHCCCCCCCHHHHSSSS-CCHHHHHHHHHHHHHH
T ss_pred             -------------HHHHHcCCCccCCHHHccCCC-CcHHHHHHHHHHHHHH
Confidence                         112367888888888876544 6777777777776654

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=98.01  E-value=1.5e-05  Score=60.68  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             cccHHHHHHHhHHHhcCCc--chhhhc----CCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         14 NLSRHDMLHWVNDTLQSSF--GKIEEL----CSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        14 ~~SR~ELL~WiN~~L~~~~--tKIEel----~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      ...++.||.|+|..++ .|  .+|...    .+|-|+|.|++.+.|+.|++. ..+..   -.+|++.   ||+      
T Consensus         7 ~~~~~~LL~W~q~~~~-~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~---~~~n~~~---af~------   73 (118)
T 1bhd_A            7 TNSEKILLSWVRQTTR-PYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMS---PIERLEH---AFS------   73 (118)
T ss_dssp             SHHHHHHHHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSC---HHHHHHH---HHH------
T ss_pred             CCHHHHHHHHHHHHhc-cCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCcCC---HHHHHHH---HHH------
Confidence            3456779999999986 22  245554    579999999999999999865 54433   3455443   443      


Q ss_pred             CCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         87 GYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        87 ~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                     +.-.++||++.++.+.++.++ .|-.-.+.++..||..
T Consensus        74 ---------------~Ae~~lgi~~ll~~eDv~~~~-pD~ksvmtYvs~l~~~  110 (118)
T 1bhd_A           74 ---------------KAQTYLGIEKLLDPEDVAVRL-PDKKSIIMYLTSLFEV  110 (118)
T ss_dssp             ---------------HHHHHHCCCCCSCHHHHHTSC-CCHHHHHHHHHHHHHH
T ss_pred             ---------------HHHHHcCCCcccCHHHhhcCC-CcHHHHHHHHHHHHHH
Confidence                           112478888889999887544 6777777777666655

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=98.01  E-value=3.1e-05  Score=59.22  Aligned_cols=99  Identities=12%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             CcccHHHHHHHhHHHhcCCc--chhh----hcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         13 ENLSRHDMLHWVNDTLQSSF--GKIE----ELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~--tKIE----el~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ....+..||.|+|..++- |  .+|.    ...+|-|+|-|++.+.|+.|++. ..+   .+-.+|+++.   |+     
T Consensus         7 ~~~~~~~LL~W~q~~~~~-y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~a---f~-----   74 (121)
T 2d88_A            7 GVARSSKLLGWCQRQTDG-YAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE---QNVEKNNQLA---FD-----   74 (121)
T ss_dssp             SCSSSCHHHHHHHHHSTT-SSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT---TCHHHHHHHH---HH-----
T ss_pred             ccCHHHHHHHHHHHHhcc-CCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCc---cCHHHHHHHH---HH-----
Confidence            344457799999999852 2  1233    45789999999999999998855 444   3456666653   43     


Q ss_pred             cCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                      ..-..+||++-++.+.++.+.-.|-.-.+-.+..||..
T Consensus        75 ----------------~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~  112 (121)
T 2d88_A           75 ----------------IAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEM  112 (121)
T ss_dssp             ----------------HHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHH
Confidence                            01124888889999999986666777666666666655

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=97.97  E-value=4e-05  Score=58.11  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             cccHHHHHHHhHHHhc-------CCcchhhhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         14 NLSRHDMLHWVNDTLQ-------SSFGKIEELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        14 ~~SR~ELL~WiN~~L~-------~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ...+..||.|+|..++       .|++  ....+|-|+|-|++.+.|+.|++. ..+.   +-.+|++..   |+     
T Consensus         6 ~~~~~~LL~W~q~~~~~y~~v~v~nFs--~sw~dG~af~aLih~~~P~lid~~~l~~~---~~~~n~~~a---f~-----   72 (116)
T 1wyl_A            6 SGTQEELLRWCQEQTAGYPGVHVSDLS--SSWADGLALCALVYRLQPGLLEPSELQGL---GALEATAWA---LK-----   72 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHSTTCCCSCTT--TTTTSSHHHHHHHHHHCTTSCCCSSGGGC---CHHHHHHHH---HH-----
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCcc--ccccccHHHHHHHHHHCcCCCCHHHhccC---CHHHHHHHH---HH-----
Confidence            3445779999999875       2233  246789999999999999999865 5443   455666654   33     


Q ss_pred             cCCCccccchhhhhhHHHHhh-hccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHR-IRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r-~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                       +.++ +||++-++.+.++.+  .|-.-.+-.+..||..
T Consensus        73 -----------------~Ae~~lgi~~lL~peD~~~~--~d~ksv~tYvs~l~~~  108 (116)
T 1wyl_A           73 -----------------VAENELGITPVVSAQAVVAG--SDPLGLIAYLSHFHSA  108 (116)
T ss_dssp             -----------------HHHHTTCCCCCSCHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHcCCccccCHHHHhcC--CchhHHHHHHHHHHHH
Confidence                             1234 788888999999887  5666666666666554

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=97.93  E-value=1.2e-05  Score=60.23  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=58.0

Q ss_pred             HHHHHHHhHHHhcCCcch--hhhcCCCchHHHhhHhhcCCccceec-cCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         17 RHDMLHWVNDTLQSSFGK--IEELCSGAAYCQFMDMLFPGLYSIFI-LRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tK--IEel~tGAaYCQlmD~lfPg~IpmkF-na~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      +.|+..||++.|+.++..  .|.|.+|+..|++++.+.||+|+ ++ .+...+....|...+-++.++.|+++.
T Consensus         5 e~e~~~WIe~~l~~~~~~~l~~~L~dGvvLCkL~N~l~P~~v~-ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~   77 (108)
T 1h67_A            5 ERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ-KVNDPVQNWHKLENIGNFLRAIKHYGVKPH   77 (108)
T ss_dssp             SHHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST-TCCCTTSSHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-cccccccchHHHHHHHHHHHHHHHcCCCcc
Confidence            478999999999988743  57799999999999999999998 53 355668888999998888877777653

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=2.3e-05  Score=59.90  Aligned_cols=98  Identities=10%  Similarity=-0.044  Sum_probs=72.3

Q ss_pred             HHHHHHHhHHHhcCC-----cch-hhhcCCCchHHHhhHhhcCCccceecc--CCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         17 RHDMLHWVNDTLQSS-----FGK-IEELCSGAAYCQFMDMLFPGLYSIFIL--RNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        17 R~ELL~WiN~~L~~~-----~tK-IEel~tGAaYCQlmD~lfPg~IpmkFn--a~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      ++++..|||+.|...     ++. .|+|.+|...|+|++.+-|+.++ +++  |......++|....-+++++.|+..  
T Consensus        20 ~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~-~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~--   96 (129)
T 2yrn_A           20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE-DINGCPKNRSQMIENIDACLNFLAAKGINI--   96 (129)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT-TCCSSCCSTTHHHHHHHHHHHHHHHHTCCC--
T ss_pred             HHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc-cccCCCCcHHHHHHHHHHHHHHHHHhCCcc--
Confidence            457999999988643     333 37899999999999999999988 653  6788899999999888766554432  


Q ss_pred             CccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         89 GYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                            ..|-.+.++.|...--+-++--+-.||.+
T Consensus        97 ----------------------~~i~~~DI~dgn~~~iL~Llw~L~r~~q~  125 (129)
T 2yrn_A           97 ----------------------QGLSAEEIRNGNLKAILGLFFSLSRYKQQ  125 (129)
T ss_dssp             ----------------------TTCCHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ----------------------cCCChhhhhcCCHhHHHHHHHHHHHHHhh
Confidence                                  14667788888777667766444455443

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=97.90  E-value=3.7e-05  Score=60.40  Aligned_cols=75  Identities=9%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             CcccHHHHHHHhHHHhcCCcc--------hhhhcCCCchHHHhhHhhcC---Cccceecc-CCCHHHHHHHHHHHHhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFG--------KIEELCSGAAYCQFMDMLFP---GLYSIFIL-RNLLHTFVLHLILKAQQDS   80 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~t--------KIEel~tGAaYCQlmD~lfP---g~IpmkFn-a~~e~E~i~NfKlLQ~af~   80 (185)
                      +..-..|+..||++.|+.++.        =.|.|.+|+..|+|++.+.|   |+|+++++ ++..+.+..|...+-++.+
T Consensus         7 ~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac~   86 (144)
T 1ujo_A            7 GEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAE   86 (144)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHHH
Confidence            444568999999999998875        24569999999999999999   89987754 5577889999999988888


Q ss_pred             hhhhccC
Q psy12631         81 KNRRAKG   87 (185)
Q Consensus        81 Kn~i~k~   87 (185)
                      +.|+++.
T Consensus        87 ~~Gv~~~   93 (144)
T 1ujo_A           87 DYGVIKT   93 (144)
T ss_dssp             HHTCCSS
T ss_pred             HcCcCcc
Confidence            7777653

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=97.83  E-value=7.3e-05  Score=63.02  Aligned_cols=94  Identities=13%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             cHHHHHHHhHHHhcCCcc--hhh----hcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         16 SRHDMLHWVNDTLQSSFG--KIE----ELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~t--KIE----el~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      .+..||.|+|..+. .|+  +|+    +..+|.|||.|++.+.|+.|++.  .-.+.+-.+|.+..-++           
T Consensus       141 ~~~~LL~W~~~~~~-~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~--~l~~~~~~~n~~~a~~~-----------  206 (254)
T 1wku_A          141 AKEGLLLWCQRKTA-PYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYA--KLRKDDPIGNLNTAFEV-----------  206 (254)
T ss_dssp             HHHHHHHHHHHHHT-TCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGG--GCCTTCHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHcc-CCCCCcCCCCccchhhHHHHHHHHHHHCCCccccc--ccCcCCHHHHHHHHHHH-----------
Confidence            45679999998774 222  232    57899999999999999999854  33334567776654332           


Q ss_pred             ccccchhhhhhHHHHh-hhccccccchhhhhcccccchHHHHHHHHHHH
Q psy12631         90 YLGIWTAWHFVAVIYH-RIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHF  137 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~-r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~  137 (185)
                                    .+ .+||++.+..+.++.+.-.|-.-.+-.+..||
T Consensus       207 --------------A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~  241 (254)
T 1wku_A          207 --------------AEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFY  241 (254)
T ss_dssp             --------------HHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             --------------HHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHH
Confidence                          23 37888889999998876554443333333333

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=97.81  E-value=4.7e-05  Score=59.97  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             HHHHHHHhHHHhcCCcch--hhhcCCCchHHHhhHhhcCCccceec-cCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         17 RHDMLHWVNDTLQSSFGK--IEELCSGAAYCQFMDMLFPGLYSIFI-LRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tK--IEel~tGAaYCQlmD~lfPg~IpmkF-na~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      ..|+..||++.|..++..  .+.|.+|+..|+|++.+.||+|+ ++ .+...+....|...+-++.++.|+++.
T Consensus        19 ~~e~~~WIe~~l~~~i~~~l~~~L~DGvvLCkL~N~l~P~~v~-kin~~~~~f~~~eNI~~FL~a~~~~Gv~~~   91 (146)
T 1wyn_A           19 EAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP-KINRSMQNWHQLENLSNFIKAMVSYGMNPV   91 (146)
T ss_dssp             HHHHHHHHHHHHCCCCCSCHHHHHHTTSHHHHHHHHHCTTSCS-CCCCSSCHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-ccccccccccHHHHHHHHHHHHHHcCCCcc
Confidence            489999999999988742  56699999999999999999996 43 456778889999999888777776653

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=97.77  E-value=4.3e-05  Score=59.50  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             HHHHHHHhHHHhcCCcch--hhhcCCCchHHHhhHhhcCCccceec-cCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         17 RHDMLHWVNDTLQSSFGK--IEELCSGAAYCQFMDMLFPGLYSIFI-LRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tK--IEel~tGAaYCQlmD~lfPg~IpmkF-na~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      ..|+..||++.|+.++..  .|.|.+|+..|++++.+.||+|+ ++ .+...+....|...+-++.++.|++.
T Consensus        19 ~~e~~~WIe~~l~~~~~~~l~~~L~DGvvLCkL~N~l~P~~v~-ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~   90 (136)
T 1wyp_A           19 EQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVK-KINESTQNWHQLENIGNFIKAITKYGVKP   90 (136)
T ss_dssp             HHHHHHHHHHHTCCCCCSCTTHHHHTSHHHHHHHHHHSTTSSS-CCCCSSCSHHHHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHccHHhHHHHHHhhCCCCcc-cccccccchHHHHHHHHHHHHHHHcCCCc
Confidence            479999999999988742  56699999999999999999996 43 35567888899999888877777664

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=97.76  E-value=2.7e-05  Score=64.21  Aligned_cols=71  Identities=15%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             cHHHHHHHhHHHhcCCcch----hhhcCCCchHHHhhHhhcCCcccee-c---------cCCCHHHHHHHHHHHHhhhhh
Q psy12631         16 SRHDMLHWVNDTLQSSFGK----IEELCSGAAYCQFMDMLFPGLYSIF-I---------LRNLLHTFVLHLILKAQQDSK   81 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~tK----IEel~tGAaYCQlmD~lfPg~Ipmk-F---------na~~e~E~i~NfKlLQ~af~K   81 (185)
                      .+.|+..||++.|+.++..    .|.|.+|+.-|++++.|.||+||++ .         .++..+.+..|...+-++.++
T Consensus        48 ~~~e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~  127 (193)
T 3i6x_A           48 HLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDE  127 (193)
T ss_dssp             HHHHHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHH
Confidence            3468999999999998864    4668999999999999999999864 3         245667778888887777777


Q ss_pred             hhhcc
Q psy12631         82 NRRAK   86 (185)
Q Consensus        82 n~i~k   86 (185)
                      .|++.
T Consensus       128 ~Gvp~  132 (193)
T 3i6x_A          128 IGLPK  132 (193)
T ss_dssp             HTCCG
T ss_pred             cCCCc
Confidence            77665

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.69  E-value=5.7e-05  Score=60.19  Aligned_cols=72  Identities=10%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             cHHHHHHHhHHHhcCCcch----hhhcCCCchHHHhhHhhcCCccceecc-CCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         16 SRHDMLHWVNDTLQSSFGK----IEELCSGAAYCQFMDMLFPGLYSIFIL-RNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~tK----IEel~tGAaYCQlmD~lfPg~IpmkFn-a~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      .+.|+..||++.|+.++..    .|.|.+|+..|++++.+.||+|+-=.. +...+.+..|...+-++.++.|+++.
T Consensus        12 ~~~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~   88 (159)
T 1p2x_A           12 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI   88 (159)
T ss_dssp             HHHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcc
Confidence            3578999999999988864    456999999999999999999852133 46778899999999888888888764

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=8.4e-05  Score=59.00  Aligned_cols=70  Identities=13%  Similarity=0.296  Sum_probs=58.4

Q ss_pred             HHHHHHHhHHHhcCCcch--------hhhcCCCchHHHhhHhhcC---Cccceec-cCCCHHHHHHHHHHHHhhhhhhhh
Q psy12631         17 RHDMLHWVNDTLQSSFGK--------IEELCSGAAYCQFMDMLFP---GLYSIFI-LRNLLHTFVLHLILKAQQDSKNRR   84 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tK--------IEel~tGAaYCQlmD~lfP---g~IpmkF-na~~e~E~i~NfKlLQ~af~Kn~i   84 (185)
                      ..|+..||++.|+.++..        .|.|.+|+..|+|++.+.|   |+|+ ++ .++..+.+..|...+-++.++.|+
T Consensus        19 e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~-kIn~~~~~F~~~eNI~~FL~ac~~~Gv   97 (155)
T 1wym_A           19 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK-KIQASTMAFKQMEQISQFLQAAERYGI   97 (155)
T ss_dssp             HHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC-CCCCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC-cccCCCccccHHHHHHHHHHHHHHcCC
Confidence            468999999999998753        4569999999999999999   9998 64 356788899999998888777776


Q ss_pred             ccC
Q psy12631         85 AKG   87 (185)
Q Consensus        85 ~k~   87 (185)
                      +..
T Consensus        98 ~~~  100 (155)
T 1wym_A           98 NTT  100 (155)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            653

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=0.00042  Score=54.07  Aligned_cols=102  Identities=11%  Similarity=0.090  Sum_probs=78.4

Q ss_pred             CcccHHHHHHHhHHHhcCCcch--h-hhcCCCchHHHhhHhhcCCcccee-c-cCCCHHHHHHHHHHHH-hhhhhhhhcc
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGK--I-EELCSGAAYCQFMDMLFPGLYSIF-I-LRNLLHTFVLHLILKA-QQDSKNRRAK   86 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tK--I-Eel~tGAaYCQlmD~lfPg~Ipmk-F-na~~e~E~i~NfKlLQ-~af~Kn~i~k   86 (185)
                      +..-++||+.||++ ++++..+  + .++++|...-.|+...||..|.|+ | +++.-..-+.||..|. .+|+|+|+. 
T Consensus        13 ~~ee~~el~~WL~~-l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~-   90 (127)
T 2ee7_A           13 DEEALHQLYLWVDN-IPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFS-   90 (127)
T ss_dssp             CHHHHHHHHHHHHH-SCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCC-
T ss_pred             CHHHHHHHHHHHHc-CCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCC-
Confidence            34457899999995 8888752  3 569999999999999999999998 6 4566677999999995 788777653 


Q ss_pred             CCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         87 GYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        87 ~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                            ++ .-.++.++.|+-..=-.++.=++.+...
T Consensus        91 ----------------------l~-~~~i~~i~~~~~Gaie~lL~~L~~~l~~  120 (127)
T 2ee7_A           91 ----------------------VP-DDVMRKIAQCAPGVVELVLIPLRQRLEE  120 (127)
T ss_dssp             ----------------------CC-HHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred             ----------------------CC-HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                                  11 2467889998876666677766666554

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=97.51  E-value=0.00021  Score=54.69  Aligned_cols=71  Identities=11%  Similarity=0.130  Sum_probs=55.1

Q ss_pred             CCcccHHHHHHHhHHHhcCCc-------c-h--hhhcCCCchHHHhhHhhcCCccceec--cCCCHHHHHHHHHHHHhhh
Q psy12631         12 SENLSRHDMLHWVNDTLQSSF-------G-K--IEELCSGAAYCQFMDMLFPGLYSIFI--LRNLLHTFVLHLILKAQQD   79 (185)
Q Consensus        12 ~~~~SR~ELL~WiN~~L~~~~-------t-K--IEel~tGAaYCQlmD~lfPg~IpmkF--na~~e~E~i~NfKlLQ~af   79 (185)
                      +..-.+.|+..|||+++.++.       + .  .|.|.+|+.-|++++.+.||+|+ ++  .+...+.+..|...+-++.
T Consensus         3 ~~~~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~-ki~~~~~~~f~~~eNI~~FL~a~   81 (121)
T 1wyr_A            3 SGSSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE-KFCLDPQTEADCINNINDFLKGC   81 (121)
T ss_dssp             CSCCSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS-CCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC-cCCCCCcchHHHHHHHHHHHHHH
Confidence            345567899999999965432       1 1  37799999999999999999999 64  3456788999999988876


Q ss_pred             hhhh
Q psy12631         80 SKNR   83 (185)
Q Consensus        80 ~Kn~   83 (185)
                      ++.|
T Consensus        82 ~~~g   85 (121)
T 1wyr_A           82 ATLQ   85 (121)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            6544

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=97.44  E-value=0.0005  Score=62.75  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CcccHHHHHHHhHHHhcC-----Ccchhh--hcCCCchHHHhhHhhcCCcccee-ccC-CCHHHHHHHHHHHHhhhhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQS-----SFGKIE--ELCSGAAYCQFMDMLFPGLYSIF-ILR-NLLHTFVLHLILKAQQDSKNR   83 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~-----~~tKIE--el~tGAaYCQlmD~lfPg~Ipmk-Fna-~~e~E~i~NfKlLQ~af~Kn~   83 (185)
                      ...+..+||.|+|..++.     +++...  ...+|-|+|-|++.+.|+.++++ +.+ .++.+..+|.+..=++     
T Consensus       395 ~~~~~~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~-----  469 (506)
T 1pxy_A          395 KEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSV-----  469 (506)
T ss_dssp             -CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHH-----
T ss_pred             ccccHHHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhhCCCeeehhhcccCCCchhHHHHHHHHHHH-----
Confidence            445788999999998863     444443  67799999999999999999877 554 4667889998874332     


Q ss_pred             hccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         84 RAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        84 i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                          .+++||++.++.+.++.+   |-.-.+-.+..||..
T Consensus       470 --------------------a~~lGi~~~l~peDi~~~---d~ksi~tyv~~l~~~  502 (506)
T 1pxy_A          470 --------------------ARKLGCSVFLLPEDIVEV---NQKMILILTASIMYW  502 (506)
T ss_dssp             --------------------HHHHTCCCCCCHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             --------------------HHHcCCCCcCCHHHccCC---ChhHHHHHHHHHHHH
Confidence                                246777778888888876   656666555555544

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.42  E-value=0.00016  Score=60.01  Aligned_cols=72  Identities=10%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             cHHHHHHHhHHHhcCCcch----hhhcCCCchHHHhhHhhcCCccceec-cCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         16 SRHDMLHWVNDTLQSSFGK----IEELCSGAAYCQFMDMLFPGLYSIFI-LRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~tK----IEel~tGAaYCQlmD~lfPg~IpmkF-na~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      .+.|+..||++.|..++..    .|.|.+|+..|+|++.+.||+|+-=+ .++..+.+..|...+-++.++.|++..
T Consensus        56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~  132 (203)
T 1p5s_A           56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI  132 (203)
T ss_dssp             HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCcc
Confidence            4588999999999988763    45699999999999999999985213 345667888899888888777776653

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=97.42  E-value=0.00046  Score=57.60  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             cHHHHHHHhHHHhc----CCcchhhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccCCCcc
Q psy12631         16 SRHDMLHWVNDTLQ----SSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYL   91 (185)
Q Consensus        16 SR~ELL~WiN~~L~----~~~tKIEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~~~~~   91 (185)
                      .+..||.|+|..+.    .|++.  +..+|-|||-|++.+.|+.+| .|.+-.+.+-++|.+..   |+           
T Consensus       144 ~~~~LL~W~~~~~~~~~v~nFs~--s~~dG~a~~aLi~~~~P~~i~-~~~~l~~~~~~~n~~~a---~~-----------  206 (245)
T 2wa7_A          144 PKQRLLGWIQNKIPYLPITNFNQ--NWQDGKALGALVDSCAPGLCP-DWESWDPQKPVDNAREA---VQ-----------  206 (245)
T ss_dssp             HHHHHHHHHHHHSTTSCCCCSSG--GGTTSHHHHHHHHHHSTTSST-TGGGSCTTCHHHHHHHH---HH-----------
T ss_pred             HHHHHHHHHHHhCCCCCCCCCcc--cchhhHHHHHHHHHHCccccc-cccccCcccHHHHHHHH---HH-----------
Confidence            36889999999876    23333  678999999999999999883 13333344567776654   32           


Q ss_pred             ccchhhhhhHHHHhh-hccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         92 GIWTAWHFVAVIYHR-IRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        92 ~~~~~~~~v~~~f~r-~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                 +-++ +||++.+..+.++.+. .|-.-.+-.+..||.+
T Consensus       207 -----------~A~~~lGi~~~l~peDi~~~~-~d~ksi~tyvs~~~~~  243 (245)
T 2wa7_A          207 -----------QADDWLGVPQVITPEEIIHPD-VDEHSVMTYLSQFPKA  243 (245)
T ss_dssp             -----------HHHHHSCCCCSSCHHHHTCTT-CCHHHHHHHHTHHHHC
T ss_pred             -----------HHHHhCCCCccCCHHHhccCC-CcHHHHHHHHHHHhcc
Confidence                       1233 7888889999988854 4556666666555543

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=97.41  E-value=0.00015  Score=60.34  Aligned_cols=81  Identities=11%  Similarity=0.199  Sum_probs=56.2

Q ss_pred             cccHH-HHHHHhHHHhcCCc--chhh----hcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         14 NLSRH-DMLHWVNDTLQSSF--GKIE----ELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        14 ~~SR~-ELL~WiN~~L~~~~--tKIE----el~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ..|-. .||.|+|..+.. |  .+|+    +..+|.|+|.|++.+.|+.+|+. ..+   .+..+|.+..-+..+     
T Consensus       131 ~~~~~~~LL~W~~~~~~~-~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~---~~~~~n~~~a~~~a~-----  201 (245)
T 1sh5_A          131 DMTAKEKLLLWSQRMVEG-YQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR---QTNLENLDQAFSVAE-----  201 (245)
T ss_dssp             SCCHHHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH---SCHHHHHHHHHHHHH-----
T ss_pred             cCCHHHHHHHHHHHHhcc-CCCcccCCccccccchHHHHHHHHHHCCCCCCHHHccc---CCHHHHHHHHHHHHH-----
Confidence            34444 599999998874 2  1343    47899999999999999999875 433   345677766543321     


Q ss_pred             cCCCccccchhhhhhHHHHhhhccccccchhhhhccc
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLG  122 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~  122 (185)
                                         ..+||++.+..+.++.++
T Consensus       202 -------------------~~lGi~~~l~peDi~~~~  219 (245)
T 1sh5_A          202 -------------------RDLGVTRLLDPEDVDVPQ  219 (245)
T ss_dssp             -------------------HHHCCCCCCCHHHHSSSS
T ss_pred             -------------------HhCCCCccCCHHHhccCC
Confidence                               137777788888877554

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.38  E-value=0.00067  Score=62.14  Aligned_cols=85  Identities=11%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             CcccHHHHHHHhHHHhcC-----Ccchhh--hcCCCchHHHhhHhhcCCcccee-ccC-CCHHHHHHHHHHHHhhhhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQS-----SFGKIE--ELCSGAAYCQFMDMLFPGLYSIF-ILR-NLLHTFVLHLILKAQQDSKNR   83 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~-----~~tKIE--el~tGAaYCQlmD~lfPg~Ipmk-Fna-~~e~E~i~NfKlLQ~af~Kn~   83 (185)
                      ...|..+||.|+|..+..     +++...  ...+|-|+|-|++.+.|+.|++. ..+ .++.+-.+|.+..=++     
T Consensus       406 ~~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af~~-----  480 (513)
T 1rt8_A          406 KTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISI-----  480 (513)
T ss_dssp             -CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHH-----
T ss_pred             CcCCHHHHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHhCCCcCCHHhhccccChhhHHHHHHHHHHH-----
Confidence            456778899999998864     344444  47789999999999999999977 444 4677888888864332     


Q ss_pred             hccCCCccccchhhhhhHHHHhhhccccccchhhhhccc
Q psy12631         84 RAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLG  122 (185)
Q Consensus        84 i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~  122 (185)
                                          -+++||++.++.+.++.++
T Consensus       481 --------------------A~~lGi~~~l~peDi~~~~  499 (513)
T 1rt8_A          481 --------------------ARKLGAVIFILPEDIVAVR  499 (513)
T ss_dssp             --------------------HHHTTCCCCCCHHHHHTTC
T ss_pred             --------------------HHHcCCCccCCHHHhcCCC
Confidence                                2467777788888888876

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=97.37  E-value=0.00033  Score=54.12  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CCcccHHHHHHHhHHHhc--CC------cch-h-hhcCCCchHHHhhHhhcCCccceec--cCCCHHHHHHHHHHHHhhh
Q psy12631         12 SENLSRHDMLHWVNDTLQ--SS------FGK-I-EELCSGAAYCQFMDMLFPGLYSIFI--LRNLLHTFVLHLILKAQQD   79 (185)
Q Consensus        12 ~~~~SR~ELL~WiN~~L~--~~------~tK-I-Eel~tGAaYCQlmD~lfPg~IpmkF--na~~e~E~i~NfKlLQ~af   79 (185)
                      +.-..+.|+..||++++.  .+      -.. + |.|.+|+.-|++++.+.||+|| +.  .+...+.+..|...+.++.
T Consensus         9 ~~~~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~-kI~~~~~~~f~~~eNI~~FL~a~   87 (126)
T 2l3g_A            9 SHMNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE-KVYPEPRSESECLSNIREFLRGC   87 (126)
T ss_dssp             CCCCHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS-CCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC-ccCCCCCcchHHHHHHHHHHHHH
Confidence            345667999999999843  31      112 3 8899999999999999999999 64  3455789999999988886


Q ss_pred             hh
Q psy12631         80 SK   81 (185)
Q Consensus        80 ~K   81 (185)
                      ++
T Consensus        88 ~~   89 (126)
T 2l3g_A           88 GA   89 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=97.34  E-value=0.00018  Score=58.82  Aligned_cols=71  Identities=14%  Similarity=0.123  Sum_probs=56.3

Q ss_pred             HHHHHHHhHHHhcCCcch----hhhcCCCchHHHhhHhhcCCcccee--c-------c-CCCHHHHHHHHHHHHhhhhhh
Q psy12631         17 RHDMLHWVNDTLQSSFGK----IEELCSGAAYCQFMDMLFPGLYSIF--I-------L-RNLLHTFVLHLILKAQQDSKN   82 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tK----IEel~tGAaYCQlmD~lfPg~Ipmk--F-------n-a~~e~E~i~NfKlLQ~af~Kn   82 (185)
                      +.|+..||++.++.++..    .|.|.+|+.-|++++.+.||+||++  +       + ++..+-+..|...+-++.++.
T Consensus        27 ~~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~~  106 (190)
T 2rr8_A           27 LEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEI  106 (190)
T ss_dssp             HHHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGGT
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHHc
Confidence            478999999999988753    3569999999999999999999864  2       1 345566778888888887777


Q ss_pred             hhccC
Q psy12631         83 RRAKG   87 (185)
Q Consensus        83 ~i~k~   87 (185)
                      |+++.
T Consensus       107 Gvp~~  111 (190)
T 2rr8_A          107 GLPKI  111 (190)
T ss_dssp             TCCST
T ss_pred             CCCcc
Confidence            77653

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=97.30  E-value=0.00035  Score=58.26  Aligned_cols=81  Identities=14%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             ccHHHHHHHhHHHhcCCc--chh----hhcCCCchHHHhhHhhcCCcccee-cc-CCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         15 LSRHDMLHWVNDTLQSSF--GKI----EELCSGAAYCQFMDMLFPGLYSIF-IL-RNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~~~--tKI----Eel~tGAaYCQlmD~lfPg~Ipmk-Fn-a~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      .++..||.|+|..+.. +  .+|    .+..+|.|||.|++.+.|+.++.. .. ..   +-.+|.+.   ||+      
T Consensus       135 ~~~~~LL~W~~~~~~~-~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---~~~~n~~~---a~~------  201 (246)
T 1dxx_A          135 NSEKILLSWVRQSTRN-YPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---SATQRLEH---AFN------  201 (246)
T ss_dssp             CHHHHHHHHHHHHHTT-CTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---CHHHHHHH---HHH------
T ss_pred             cHHHHHHHHHHHHhcc-CCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhhcccC---CHHHHHHH---HHH------
Confidence            3567899999998762 2  123    347899999999999999999865 33 22   33455443   443      


Q ss_pred             CCCccccchhhhhhHHHHhhhccccccchhhhhcccc
Q psy12631         87 GYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGL  123 (185)
Q Consensus        87 ~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~  123 (185)
                                     ..-+++||++.+..+.++.++.
T Consensus       202 ---------------~A~~~lGi~~~l~peDi~~~~p  223 (246)
T 1dxx_A          202 ---------------IARYQLGIEKLLDPEDVDTTYP  223 (246)
T ss_dssp             ---------------HHHHTTCCCCCCCHHHHSSSSC
T ss_pred             ---------------HHHHhCCCCccCCHHHhhcCCC
Confidence                           1123578888888888887765

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=97.20  E-value=0.00064  Score=57.47  Aligned_cols=85  Identities=15%  Similarity=0.123  Sum_probs=59.4

Q ss_pred             HHHHHHHhHHHhcC-Ccchhhh----cCCCchHHHhhHhhcCCccce-------eccCCCHHHHHHHHHHHHhhhhhhhh
Q psy12631         17 RHDMLHWVNDTLQS-SFGKIEE----LCSGAAYCQFMDMLFPGLYSI-------FILRNLLHTFVLHLILKAQQDSKNRR   84 (185)
Q Consensus        17 R~ELL~WiN~~L~~-~~tKIEe----l~tGAaYCQlmD~lfPg~Ipm-------kFna~~e~E~i~NfKlLQ~af~Kn~i   84 (185)
                      +..||.|+|..++. .+.+|+.    ..+|-|||.|++.+.|+.+|.       .+.+-.+.+-++|.+..=++.     
T Consensus       170 ~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A-----  244 (275)
T 1aoa_A          170 EELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQA-----  244 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHH-----
Confidence            56699999998752 2333443    577999999999999996653       366666677888877654432     


Q ss_pred             ccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccch
Q psy12631         85 AKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDN  126 (185)
Q Consensus        85 ~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDN  126 (185)
                                          +++||++.+..+.++.+.-.-+
T Consensus       245 --------------------~~lGi~~~l~peDi~~~~~k~i  266 (275)
T 1aoa_A          245 --------------------DKLGCRQFVTPADVVSGNPKLN  266 (275)
T ss_dssp             --------------------TTTTCCCSCCHHHHHTTCHHHH
T ss_pred             --------------------HHcCCCCcCCHHHcCCCChhHH
Confidence                                3566667777788887654333

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=97.08  E-value=0.00054  Score=62.54  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             ccHHHHHHHhHHHhcC-----Ccchh-hhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         15 LSRHDMLHWVNDTLQS-----SFGKI-EELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~-----~~tKI-Eel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ..+..||.|+|..|+.     +++.. .+..+|-+||-|++.+.|+.+++.  +-.+.+..+|.+..=++.++.||+
T Consensus       152 ~~~~~LL~W~n~~l~~~g~~~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~--~l~~~~~~~n~~~a~~~a~~lGi~  226 (506)
T 1pxy_A          152 PPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPA--TLDAKDPLERAELVLSHAERMNCK  226 (506)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGG--GGGCCSHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHhcCCCccCccccccccchHHHHHHHHHhCccccccc--cCCcCCHHHHHHHHHHHHHHcCCC
Confidence            3567899999987752     22222 468899999999999999999854  334456788888755444444443

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=97.06  E-value=0.0009  Score=57.46  Aligned_cols=96  Identities=18%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             ccHHHHHHHhHHHhc----CCcchhhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccCCCc
Q psy12631         15 LSRHDMLHWVNDTLQ----SSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGY   90 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~----~~~tKIEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~~~~   90 (185)
                      ..+..||.|+|..+.    .|++.  +..+|-|||-|++.+.|+.+| .|..-.+.+-.+|.+..   |+          
T Consensus       170 s~k~~LL~W~n~~~~~~~I~nFs~--sw~DG~af~aLi~~~~P~li~-d~~~l~~~~~~~n~~~A---f~----------  233 (272)
T 3hoc_A          170 TPKQRLLGWIQNKLPQLPITNFSR--DWQSGRALGALVDSCAPGLCP-DWDSWDASKPVTNAREA---MQ----------  233 (272)
T ss_dssp             CHHHHHHHHHHHHCTTSCCCCSSG--GGTTSHHHHHHHHHHSTTSST-TGGGSCTTCHHHHHHHH---HH----------
T ss_pred             CHHHHHHHHHHhhCCCCCCCChhh--cccchHHHHHHHHHhCccccc-chhhcCccCHHHHHHHH---HH----------
Confidence            357789999999765    23443  578899999999999999884 13333334567777664   33          


Q ss_pred             cccchhhhhhHHHHhh-hccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         91 LGIWTAWHFVAVIYHR-IRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        91 ~~~~~~~~~v~~~f~r-~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                  +-++ +||++.+..+.++.++ .|-.-.+-.+..||.|
T Consensus       234 ------------~Ae~~lGi~~ll~peDiv~~~-pD~ksimtYvs~~~~a  270 (272)
T 3hoc_A          234 ------------QADDWLGIPQVITPEEIVDPN-VDKHSVMTYLSQFPKA  270 (272)
T ss_dssp             ------------HHHHHHCCCCSSCHHHHTCTT-CCHHHHHHHHTTCC--
T ss_pred             ------------HHHHhCCCCccCCHHHhccCC-CChHHHHHHHHHhhcc
Confidence                        1234 8888889988888864 5666666655555544

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=96.96  E-value=0.00094  Score=61.14  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=50.1

Q ss_pred             cHHHHHHHhHHHhcC-----Ccchh-hhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         16 SRHDMLHWVNDTLQS-----SFGKI-EELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        16 SR~ELL~WiN~~L~~-----~~tKI-Eel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      .+..||.|+|..++.     .++.. .+..+|.+||-|++.+.|+.+++.  +-.+.+..+|.+..-++.++.||++
T Consensus       162 ~~~~LL~W~n~~l~~~g~~~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~--~l~~~~~~~n~~~a~~~a~~lgi~~  236 (513)
T 1rt8_A          162 PEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRA--PLQTTDVLQRAEQVLQNAEKLDCRK  236 (513)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSG--GGGCCCHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCcCcccchhhhhccHHHHHHHHHHCccccccC--CCCccCHHHHHHHHHHHHHHcCCCc
Confidence            367799999998752     23222 347789999999999999998854  4444567788888766666666654

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=96.77  E-value=0.0055  Score=47.20  Aligned_cols=90  Identities=12%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             HHHHHHHhHHHhc---CCcchh-hhcCCCchHHHhhHhhcCCcccee-c--cCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         17 RHDMLHWVNDTLQ---SSFGKI-EELCSGAAYCQFMDMLFPGLYSIF-I--LRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        17 R~ELL~WiN~~L~---~~~tKI-Eel~tGAaYCQlmD~lfPg~Ipmk-F--na~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      ++....|+|..|.   ..++.+ +++++|...|++++.+-|+.+|.+ +  .|+.....++|..+.=+.+++.|+..   
T Consensus        24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~~gi~l---  100 (131)
T 2vzc_A           24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEK---  100 (131)
T ss_dssp             HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred             HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHHcCCCc---
Confidence            4558999999865   345554 589999999999999999999975 4  57888999999998766655444321   


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHH
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLG  130 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNlefl  130 (185)
                                           ..|--+.++-|...-.|-++
T Consensus       101 ---------------------~~I~~~DIvdGn~kliLgLi  120 (131)
T 2vzc_A          101 ---------------------PKPRPEDIVNCDLKSTLRVL  120 (131)
T ss_dssp             ---------------------CSSCHHHHHTTCHHHHHHHH
T ss_pred             ---------------------CCCCHHHhhCCCHHhHHHHH
Confidence                                 25777888888766556555

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=96.68  E-value=0.0061  Score=53.62  Aligned_cols=96  Identities=14%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             cccHHHHHHHhHHHhcC----CcchhhhcCCCchHHHhhHhhcCCccc-ee-ccCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         14 NLSRHDMLHWVNDTLQS----SFGKIEELCSGAAYCQFMDMLFPGLYS-IF-ILRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        14 ~~SR~ELL~WiN~~L~~----~~tKIEel~tGAaYCQlmD~lfPg~Ip-mk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      ...+..||.|+|..+.-    |++  ....+|-|+|-|+|.+.|+.++ ++ +.+.   +-++|++.   ||+       
T Consensus       139 ~~~k~~LL~W~~~~~~~~~v~nF~--~sw~DG~af~aLi~~~~P~~~~d~~~l~~~---~~~~n~~~---Af~-------  203 (347)
T 4b7l_A          139 QTPKQRLLGWIQNKIPYLPITNFN--QNWQDGKALGALVDSCAPGLCPDWESWDPQ---KPVDNARE---AMQ-------  203 (347)
T ss_dssp             CCHHHHHHHHHHHHCTTSCCCCSS--GGGTTSHHHHHHHHHHSTTSSTTGGGSCTT---CHHHHHHH---HHH-------
T ss_pred             hhHHHHHHHHHHhhCCCcccCCCC--CCccchHHHHHHHHHhCCccccchhhcCcC---CHHHHHHH---HHH-------
Confidence            44567899999997642    232  4678999999999999999884 43 4443   45667665   343       


Q ss_pred             CCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         88 YGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        88 ~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                    ..-+.+||++.++.+.++.++ -|-.-.+-.+..||.+
T Consensus       204 --------------~Ae~~lGip~ll~peDi~~~~-pDeksimtYvs~~~~~  240 (347)
T 4b7l_A          204 --------------QADDWLGVPQVITPEEIIHPD-VDEHSVMTYLSQFPKA  240 (347)
T ss_dssp             --------------HHHHHHCCCCSSCHHHHTCTT-CCHHHHHHHHTTGGGC
T ss_pred             --------------HHHHhcCCCcccCHHHcCCCC-CChhHHHHHHHHHhhh
Confidence                          112347899999999999776 4666666666666655

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=96.61  E-value=0.0071  Score=50.79  Aligned_cols=71  Identities=8%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             cHHHHHHHhHHHhcCC---cch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         16 SRHDMLHWVNDTLQSS---FGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~---~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      -.+++..|||..|.-.   ++. .++|.+|...|++++.+-|+.++---.++.....++|....-+++++.|+..
T Consensus        28 q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~l  102 (254)
T 1wku_A           28 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKL  102 (254)
T ss_dssp             HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCc
Confidence            3567999999998633   333 3678999999999999999988742235677899999999888887777653

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=96.59  E-value=0.0041  Score=54.07  Aligned_cols=97  Identities=13%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             CcccH-HHHHHHhHHHhcCCcc--hh----hhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhh
Q psy12631         13 ENLSR-HDMLHWVNDTLQSSFG--KI----EELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRR   84 (185)
Q Consensus        13 ~~~SR-~ELL~WiN~~L~~~~t--KI----Eel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i   84 (185)
                      ...|- ..||.|+|..+.. +.  +|    ....+|.|+|-|++.+.|+.|++. ..+.   +-.+|.+..   |+    
T Consensus       186 ~~~s~k~~LL~W~n~~~~~-y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~---~~~~N~~~A---f~----  254 (296)
T 3f7p_A          186 EDMTAKEKLLLWSQRMVEG-YQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ---TNLENLDQA---FS----  254 (296)
T ss_dssp             TTSCHHHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS---CHHHHHHHH---HH----
T ss_pred             ccCCHHHHHHHHHHHHhcC-CCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc---cHHHHHHHH---HH----
Confidence            34554 4599999998863 22  22    578899999999999999999876 5443   345677654   43    


Q ss_pred             ccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHH
Q psy12631         85 AKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFV  138 (185)
Q Consensus        85 ~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~d  138 (185)
                                       ..-.++||++.+..+.++..+ .|-.-.+-.+..||.
T Consensus       255 -----------------~Ae~~LGi~~ll~pEDi~~~~-pDeksimtyvs~ly~  290 (296)
T 3f7p_A          255 -----------------VAERDLGVTRLLDPEDVDVPQ-PDEKSIITYVSSLYD  290 (296)
T ss_dssp             -----------------HHHHHHCCCCCCCHHHHSSSS-CCHHHHHHHHHHHHH
T ss_pred             -----------------HHHHhCCCCccCCHHHhcCCC-CcHHHHHHHHHHHHH
Confidence                             011357888888888876543 344445555544443

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=96.58  E-value=0.0042  Score=52.41  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             HHHHHHHhHHHhcCC------------cch-hhhcCCCchHHHhhHhhcCCcccee-cc--CCCHHHHHHHHHHHHhhhh
Q psy12631         17 RHDMLHWVNDTLQSS------------FGK-IEELCSGAAYCQFMDMLFPGLYSIF-IL--RNLLHTFVLHLILKAQQDS   80 (185)
Q Consensus        17 R~ELL~WiN~~L~~~------------~tK-IEel~tGAaYCQlmD~lfPg~Ipmk-Fn--a~~e~E~i~NfKlLQ~af~   80 (185)
                      .+++..|||..|..+            +.. .++|.+|...|++++.+.|++|+.+ ++  +......++|....-++++
T Consensus        26 ~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k  105 (275)
T 1aoa_A           26 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSAS  105 (275)
T ss_dssp             HHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            578999999998752            222 4679999999999999999999864 44  3356789999999998888


Q ss_pred             hhhhcc
Q psy12631         81 KNRRAK   86 (185)
Q Consensus        81 Kn~i~k   86 (185)
                      +.|+..
T Consensus       106 ~~g~~l  111 (275)
T 1aoa_A          106 AIGCHV  111 (275)
T ss_dssp             HTTCCC
T ss_pred             HcCCcc
Confidence            777654

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=96.50  E-value=0.013  Score=48.61  Aligned_cols=71  Identities=11%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             ccHHHHHHHhHHHhcC--------Ccch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         15 LSRHDMLHWVNDTLQS--------SFGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~--------~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      .-++.+..|||..|..        .++. -++|.+|...|++++.+-|+.+| +..++.....++|....-+++++.|+.
T Consensus        12 ~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~-~~~~~~~~~~~eNv~~aL~~~k~~g~~   90 (245)
T 1sh5_A           12 VQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP-REKGRMRFHKLQNVQIALDYLRHRQVK   90 (245)
T ss_dssp             HHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC-CCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCcccc-CCCCcchHHHHHhHHHHHHHHHHcCCc
Confidence            3456799999999865        2333 46699999999999999999988 456777889999999998888877664


Q ss_pred             c
Q psy12631         86 K   86 (185)
Q Consensus        86 k   86 (185)
                      .
T Consensus        91 l   91 (245)
T 1sh5_A           91 L   91 (245)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=96.09  E-value=0.011  Score=49.17  Aligned_cols=72  Identities=10%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             cccHHHHHHHhHHHhcC----Ccch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         14 NLSRHDMLHWVNDTLQS----SFGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        14 ~~SR~ELL~WiN~~L~~----~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      ..-.+++..|||..|..    .++. -++|.+|...|++++.|-|+.+|- .+++.....++|....-+++++.|+..
T Consensus        15 ~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k~~g~~l   91 (246)
T 1dxx_A           15 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQNNNVDL   91 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-CCCccHHHHHHHHHHHHHHHHHcCCcc
Confidence            34456799999999862    3333 467999999999999999988874 467778899999999999888877764

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=96.02  E-value=0.0038  Score=58.93  Aligned_cols=95  Identities=14%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             cHHHHHHHhHHHhcCCcc--hh----hhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         16 SRHDMLHWVNDTLQSSFG--KI----EELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~~t--KI----Eel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      .+..||.|+|..+. .|+  .|    ....+|-|||-|++.+.|+.|+.. +.+..   -.+|.+..   |+        
T Consensus       122 ~~~~ll~W~~~~~~-~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~~---~~~n~~~a---~~--------  186 (863)
T 1sjj_A          122 AKEGLLLWYQRKTA-PYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDD---PLTNLNTA---FD--------  186 (863)
T ss_dssp             STTTTHHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSCC---CGGGCTHH---HH--------
T ss_pred             hHHHHHHHHHHhcc-CCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCCCC---HHHHHHHH---HH--------
Confidence            35679999998774 222  12    267899999999999999999976 55532   33444432   22        


Q ss_pred             CccccchhhhhhHHHHh-hhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         89 GYLGIWTAWHFVAVIYH-RIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~-r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                    +.. .+||++.+..+.++.+.-.|-.-.+-.+..||..
T Consensus       187 --------------~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~  224 (863)
T 1sjj_A          187 --------------VAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHA  224 (863)
T ss_dssp             --------------HHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTT
T ss_pred             --------------HHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHH
Confidence                          123 3788888888998887656666666655554433

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=95.99  E-value=0.024  Score=49.28  Aligned_cols=68  Identities=12%  Similarity=0.177  Sum_probs=54.7

Q ss_pred             HHHHHHHhHHHhcC---Ccch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         17 RHDMLHWVNDTLQS---SFGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        17 R~ELL~WiN~~L~~---~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ++.+..|||..|.-   .++. -|+|.+|...|++++.|-|+.+|- -.++.....++|....-+++++.|+.
T Consensus        75 kktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~-~~~~~r~~kleNvn~aL~~lk~~gv~  146 (296)
T 3f7p_A           75 KKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHRQVK  146 (296)
T ss_dssp             HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc-cCCcChhhhhhhHHHHHHHHHHhCcc
Confidence            46799999999853   3333 366999999999999999998885 46777889999999988887776654

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=95.88  E-value=0.03  Score=46.58  Aligned_cols=72  Identities=10%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             ccHHHHHHHhHHHhcC---Ccch-hhhcCCCchHHHhhHhhcCCccceecc--CCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         15 LSRHDMLHWVNDTLQS---SFGK-IEELCSGAAYCQFMDMLFPGLYSIFIL--RNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~---~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFn--a~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      .-++++..|||+.|.-   .++. .++|.+|...|++++.+-|+.++-+++  ++.....++|....-+++++.|+.-
T Consensus        20 ~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~l   97 (245)
T 2wa7_A           20 IQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKL   97 (245)
T ss_dssp             HHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCCcc
Confidence            3456799999999852   2222 468999999999999999998853443  5677889999999888888777653

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=94.95  E-value=0.037  Score=52.22  Aligned_cols=71  Identities=8%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             cHHHHHHHhHHHhcC---Ccch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhcc
Q psy12631         16 SRHDMLHWVNDTLQS---SFGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAK   86 (185)
Q Consensus        16 SR~ELL~WiN~~L~~---~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k   86 (185)
                      -++.+..|||..|.-   .++. .++|.+|...|++++.|-|+.+|---.++.....++|..+.-+++.+.|+.-
T Consensus         9 q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~   83 (863)
T 1sjj_A            9 QRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKL   83 (863)
T ss_dssp             HHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCcc
Confidence            346799999999853   2333 2678999999999999999988742345778899999998888877777653

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=94.67  E-value=0.13  Score=44.05  Aligned_cols=70  Identities=9%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             cHHHHHHHhHHHhcC---Ccch-hhhcCCCchHHHhhHhhcCCccceec--cCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         16 SRHDMLHWVNDTLQS---SFGK-IEELCSGAAYCQFMDMLFPGLYSIFI--LRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        16 SR~ELL~WiN~~L~~---~~tK-IEel~tGAaYCQlmD~lfPg~IpmkF--na~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      -++.+..|||..|..   .++. -+++.+|...|++++.|-|+.+.-++  .|+...+.++|..+.-+++++.|+.
T Consensus        48 Qkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~  123 (272)
T 3hoc_A           48 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIK  123 (272)
T ss_dssp             HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCc
Confidence            345689999998743   3333 26799999999999999999883344  4667788999999888887776664

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=94.60  E-value=0.059  Score=49.51  Aligned_cols=71  Identities=13%  Similarity=0.187  Sum_probs=54.0

Q ss_pred             HHHHHHHhHHHhcCCcc-----------h-hhhcCCCchHHHhhHhhcCCcccee-cc--CCC-HHHHHHHHHHHHhhh-
Q psy12631         17 RHDMLHWVNDTLQSSFG-----------K-IEELCSGAAYCQFMDMLFPGLYSIF-IL--RNL-LHTFVLHLILKAQQD-   79 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~t-----------K-IEel~tGAaYCQlmD~lfPg~Ipmk-Fn--a~~-e~E~i~NfKlLQ~af-   79 (185)
                      -+|--.||++...+...           . .|-|.+|++-|+|++.+.||+||++ .+  ++. .+-...|..-+-+|. 
T Consensus         7 w~~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~   86 (587)
T 3ky9_A            7 WRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCC   86 (587)
T ss_dssp             HHHHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHH
Confidence            36888999987554442           1 3568999999999999999999975 54  333 577788888877777 


Q ss_pred             hhhhhccC
Q psy12631         80 SKNRRAKG   87 (185)
Q Consensus        80 ~Kn~i~k~   87 (185)
                      ++.|+++.
T Consensus        87 ~~~g~~~~   94 (587)
T 3ky9_A           87 EKFGLKRS   94 (587)
T ss_dssp             HTTCCCTT
T ss_pred             HHcCCCHH
Confidence            77888764

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=92.37  E-value=0.63  Score=40.74  Aligned_cols=68  Identities=12%  Similarity=0.208  Sum_probs=52.4

Q ss_pred             HHHHHHhHHHhcC---Ccchh-hhcCCCchHHHhhHhhcCCccceec--cCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         18 HDMLHWVNDTLQS---SFGKI-EELCSGAAYCQFMDMLFPGLYSIFI--LRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        18 ~ELL~WiN~~L~~---~~tKI-Eel~tGAaYCQlmD~lfPg~IpmkF--na~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      +-.-.|+|..|.-   .++.+ ++|.+|...|+|++.|-+..++-++  .++.....++|..+.=+.+++.|+.
T Consensus        20 ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~   93 (347)
T 4b7l_A           20 NTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIK   93 (347)
T ss_dssp             HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhccc
Confidence            3478899998753   44443 5799999999999999999888664  5777888899988877766655543

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1

Probab=91.11  E-value=0.11  Score=41.37  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             ccHHHHHHHhHHHh-cCCcchhhhcCCCchHHHhhHhhcCCccceec----cCC---CHHHHHHHHHHHHhhhh
Q psy12631         15 LSRHDMLHWVNDTL-QSSFGKIEELCSGAAYCQFMDMLFPGLYSIFI----LRN---LLHTFVLHLILKAQQDS   80 (185)
Q Consensus        15 ~SR~ELL~WiN~~L-~~~~tKIEel~tGAaYCQlmD~lfPg~IpmkF----na~---~e~E~i~NfKlLQ~af~   80 (185)
                      .-...|+.|+|..- ....+.+++|++|++.-+++..|-|.-.+-.|    +..   .-.--.+|+|.+=+.+.
T Consensus         9 ~~~~aLl~W~~tf~~~~~~~~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~   82 (164)
T 1wix_A            9 PLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGIT   82 (164)
T ss_dssp             HHHHHHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCcHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHH
Confidence            33467999999842 23578899999999999999999998544322    211   11236678888765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d2qjza1	120	a.40.1.1 (A:13-132) Microtubule-associated protein	2e-22

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (211), Expect = 2e-22
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPG 54
          +NLSRHDML W+N++LQ +  KIE+LCSGAAYCQFMDMLFPG
Sbjct: 1  DNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	100.0
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.84
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.28
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	98.12
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	97.79
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.74
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	97.71
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	97.64
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	97.42
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	97.28
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	96.83
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	96.39
d1wixa_	164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	93.17

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-54  Score=337.19  Aligned_cols=117  Identities=38%  Similarity=0.589  Sum_probs=109.4

Q ss_pred             CcccHHHHHHHhHHHhcCCcchhhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         13 ENLSRHDMLHWVNDTLQSSFGKIEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~~~tKIEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      +++||+|||+|||++|+++++||||||||||||||||+||||+|||+   |+|++|+||++|||+||+||          
T Consensus         1 d~~SR~eLL~WiN~~L~~~~~kiEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~~e~e~~~N~klLq~af----------   70 (120)
T d2qjza1           1 DNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGF----------   70 (120)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHH----------
T ss_pred             CCcCHHHHHHHHHHHhCCChhhHHHhcccHHHHHHHHHHCcCcchHhhhccCCCCHHHHHHHHHHHHHHH----------
Confidence            47999999999999999999999999999999999999999999997   99999999999999999985          


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHHHhhccCCCCcccccccc
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVAVIYHRIRIGTYLPTRTH  156 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~dan~~~~~~~yd~~~~R~~  156 (185)
                                     ++++|+++|||++||||+||||+||+||||+|||+|. . .++|||.++|++
T Consensus        71 ---------------~kl~I~k~i~v~kLikgk~qdnleflqWfk~f~d~n~-~-~~~Yda~~~R~G  120 (120)
T d2qjza1          71 ---------------KRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY-D-GKDYDPVAARQG  120 (120)
T ss_dssp             ---------------HHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHC-C-CCCCCHHHHTSC
T ss_pred             ---------------HHcCCCCCCCHHHHhcccchhHHHHHHHHHHHHHhcC-C-CCCCCHHhhhCc
Confidence                           5667778999999999999999999999999999954 3 478999999975

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.6e-09  Score=77.21  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             CcccHHHHHHHhHHHhc-----CCcchhh--hcCCCchHHHhhHhhcCCcccee-c--cCCCHHHHHHHHHHHHhhhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQ-----SSFGKIE--ELCSGAAYCQFMDMLFPGLYSIF-I--LRNLLHTFVLHLILKAQQDSKN   82 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~-----~~~tKIE--el~tGAaYCQlmD~lfPg~Ipmk-F--na~~e~E~i~NfKlLQ~af~Kn   82 (185)
                      ...++..||.|+|..|.     ..++.++  ++++|.++|+|++.+-|+.++.+ +  .+.++.+.++|.+..-+++   
T Consensus         5 ~~~~e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~~~~~~~~~N~~~al~~~---   81 (124)
T d1wjoa_           5 SSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMA---   81 (124)
T ss_dssp             CCSCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHH---
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCCHHhcccCCccHhhHHHHHHHHHHHH---
Confidence            56778999999999884     4566663  69999999999999999999876 4  5678999999999987653   


Q ss_pred             hhccCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHH
Q psy12631         83 RRAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWH  136 (185)
Q Consensus        83 ~i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f  136 (185)
                                            +++|+...|..+.++.|...-.+-|+-.+..+
T Consensus        82 ----------------------~~lgi~~~i~~eDI~~gn~k~iL~~i~~L~~~  113 (124)
T d1wjoa_          82 ----------------------RRIGARVYALPEDLVEVKPKMVMTVFACLMGR  113 (124)
T ss_dssp             ----------------------HHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHH
T ss_pred             ----------------------HHhCCcccCCHHHccCCCchHHHHHHHHHHHH
Confidence                                  45677777888999999988888887665443

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.8e-07  Score=65.33  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=65.7

Q ss_pred             HHHHHHhHHHhcC-Ccchh----hhcCCCchHHHhhHhhcCCcccee-------ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         18 HDMLHWVNDTLQS-SFGKI----EELCSGAAYCQFMDMLFPGLYSIF-------ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        18 ~ELL~WiN~~L~~-~~tKI----Eel~tGAaYCQlmD~lfPg~Ipmk-------Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      +-||.|+|..|+- ...+|    +++++|.++|+|++.+.|+.+|-.       ..+.++.+.++|.+..-++.+     
T Consensus        12 ~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~-----   86 (116)
T d1aoaa2          12 ELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQAD-----   86 (116)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCcccccccccccccccCcchHHHHHHHHHHHHHHHH-----
Confidence            3499999999852 33445    678899999999999999988742       456677889999887766543     


Q ss_pred             cCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHH
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYL  129 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNlef  129 (185)
                                          .+||+..|..+.++.|.....+-|
T Consensus        87 --------------------~lgi~~~i~~eDIv~gn~k~iL~l  110 (116)
T d1aoaa2          87 --------------------KLGCRQFVTPADVVSGNPKLNLAF  110 (116)
T ss_dssp             --------------------TTTCCCSCCHHHHHTTCHHHHHHH
T ss_pred             --------------------HhCCCcCcCHHhCcCCCHHHHHHH
Confidence                                455666688889998887665543

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.12  E-value=4.2e-06  Score=64.32  Aligned_cols=71  Identities=10%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             HHHHHHHhHHHhcCCcchh----hhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         17 RHDMLHWVNDTLQSSFGKI----EELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tKI----Eel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      ..|+..|||+.|+.++..+    ++|.+|++.|+|++.+.|++++-. -.++.....+.|...+-++.++.|+++.
T Consensus        13 ~~e~~~Wi~~~l~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~~~~~~~~~~~~~~eNi~~fL~~~~~~gv~~~   88 (159)
T d1p2xa_          13 VDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI   88 (159)
T ss_dssp             HHHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCceecCCCcchHHHHHHHHHHHHHHHHcCCCcc
Confidence            4688999999999988654    569999999999999999998854 3567778899999999999898888764

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2e-05  Score=57.06  Aligned_cols=86  Identities=12%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             cHHHHHHHhHHHhcCC-cchhhhcC----CCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         16 SRHDMLHWVNDTLQSS-FGKIEELC----SGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        16 SR~ELL~WiN~~L~~~-~tKIEel~----tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      .|..||.|+|..+..- =-.|++..    +|-|+|.|++.+.|+.++.+ ..+...   ++|.+.   ||+         
T Consensus         3 ~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~~~~---~~~~~~---a~~---------   67 (108)
T d1bkra_           3 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNA---HYNLQN---AFN---------   67 (108)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTCH---HHHHHH---HHH---------
T ss_pred             HHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCcccHHhcccCCH---HHHHHH---HHH---------
Confidence            3567999999998531 11455555    89999999999999999976 555543   334333   232         


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHH
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYL  129 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNlef  129 (185)
                                  ...+.+||++-+..+.++.+.. |..-.
T Consensus        68 ------------~ae~~lgip~ll~~ed~~~~~p-D~~si   94 (108)
T d1bkra_          68 ------------LAEQHLGLTKLLDPEDISVDHP-DEKSI   94 (108)
T ss_dssp             ------------HHHHHHCCCCCCCHHHHSSSSC-CHHHH
T ss_pred             ------------HHHHhcCCCCcCCHHhccCCCC-cHHHH
Confidence                        1235678888898888887764 54433

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-05  Score=57.80  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             ccHHHHHHHhHHHhcCC-cchhhhc----CCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCC
Q psy12631         15 LSRHDMLHWVNDTLQSS-FGKIEEL----CSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGY   88 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~~-~tKIEel----~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~   88 (185)
                      .+.+-||.|+|..+..- =..|.+.    .+|-|+|.|++.+.|+.++.+ ..+...   ++|.+.   ||+.       
T Consensus         5 ~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~~~l~~~~~---~~~~~~---af~~-------   71 (108)
T d1bhda_           5 NSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSP---IERLEH---AFSK-------   71 (108)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCH---HHHHHH---HHHH-------
T ss_pred             CHHHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccChhhcCcCCH---HHHHHH---HHHH-------
Confidence            34566999999998541 1145554    499999999999999999865 554432   344444   3321       


Q ss_pred             CccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         89 GYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        89 ~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                    .-+++||++-+..+.++.++ .|-.-..-....||.+
T Consensus        72 --------------a~~~lgip~ll~~~D~~~~~-pD~~si~~Yvs~~y~~  107 (108)
T d1bhda_          72 --------------AQTYLGIEKLLDPEDVAVRL-PDKKSIIMYLTSLFEV  107 (108)
T ss_dssp             --------------HHHHHCCCCCSCHHHHHTSC-CCHHHHHHHHHHHHHH
T ss_pred             --------------HHHhCCCCCCCCHHHhccCC-CcHHHHHHHHHHHHHh
Confidence                          13467888888888888776 4777666666666543

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=9.9e-05  Score=56.41  Aligned_cols=71  Identities=10%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             HHHHHHHhHHHhcCCcchh--------hhcCCCchHHHhhHhhcCCcccee---cc-CCCHHHHHHHHHHHHhhhhhhhh
Q psy12631         17 RHDMLHWVNDTLQSSFGKI--------EELCSGAAYCQFMDMLFPGLYSIF---IL-RNLLHTFVLHLILKAQQDSKNRR   84 (185)
Q Consensus        17 R~ELL~WiN~~L~~~~tKI--------Eel~tGAaYCQlmD~lfPg~Ipmk---Fn-a~~e~E~i~NfKlLQ~af~Kn~i   84 (185)
                      -.|++.||++++..++...        +.|.+|++.|+|+..|.||+|+..   .+ +...+.+..|...+-++.++.|+
T Consensus        11 e~~~~~WI~~~~g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv   90 (144)
T d1ujoa_          11 EERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV   90 (144)
T ss_dssp             HHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHhCC
Confidence            4679999999999888543        459999999999999999998853   33 45678888999999888777776


Q ss_pred             ccC
Q psy12631         85 AKG   87 (185)
Q Consensus        85 ~k~   87 (185)
                      ++.
T Consensus        91 ~~~   93 (144)
T d1ujoa_          91 IKT   93 (144)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            654

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.8e-05  Score=54.56  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=73.1

Q ss_pred             HHHHHHHhHHHhcC--------Ccchh-hhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         17 RHDMLHWVNDTLQS--------SFGKI-EELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        17 R~ELL~WiN~~L~~--------~~tKI-Eel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      ++....|+|..|.-        .++.+ +++++|..+|++++.+-|+.++ +..+.+..+.++|.+..=+.++.      
T Consensus         7 ~k~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~-~~~~~~~~~k~eN~~~aL~~~~~------   79 (120)
T d1sh5a1           7 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP-REKGRMRFHKLQNVQIALDYLRH------   79 (120)
T ss_dssp             HHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC-CCCCCSHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCccc-cCCCCCHHHHHHHHHHHHHHHHH------
Confidence            45678999999853        25555 7899999999999999999877 45789999999999887665443      


Q ss_pred             CCccccchhhhhhHHHHhhhcccc-ccchhhhhcccccchHHHHHHHHHHHHH
Q psy12631         88 YGYLGIWTAWHFVAVIYHRIRIGT-YLPTHLLVLLGLVDNRYLGIWTAWHFVA  139 (185)
Q Consensus        88 ~~~~~~~~~~~~v~~~f~r~~i~~-~ipV~kLvkg~~qDNleflqW~k~f~da  139 (185)
                                         .++.. .+..+.++.|...-.|.|+==+..+|.-
T Consensus        80 -------------------~~~~l~~i~~~dI~~Gn~k~iL~llw~L~~~~~i  113 (120)
T d1sh5a1          80 -------------------RQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQI  113 (120)
T ss_dssp             -------------------TTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             -------------------hcccccCCcHHhhccCcHHHHHHHHHHHHHHhch
Confidence                               34443 3888899999877677666545555543

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.7e-05  Score=56.63  Aligned_cols=89  Identities=12%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             HHHHHHHhHHHhcCC------------cch-hhhcCCCchHHHhhHhhcCCcccee---ccCCCHHHHHHHHHHHHhhhh
Q psy12631         17 RHDMLHWVNDTLQSS------------FGK-IEELCSGAAYCQFMDMLFPGLYSIF---ILRNLLHTFVLHLILKAQQDS   80 (185)
Q Consensus        17 R~ELL~WiN~~L~~~------------~tK-IEel~tGAaYCQlmD~lfPg~Ipmk---Fna~~e~E~i~NfKlLQ~af~   80 (185)
                      ++....|+|..|..+            ++. .+++.+|.++|+|++.+.|+.++-+   -+|....+.++|....=++++
T Consensus         6 k~~f~~WiN~~L~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~p~~~~~~~~N~~~~L~~~k   85 (131)
T d1aoaa1           6 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSAS   85 (131)
T ss_dssp             HHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcchhccCCCcCHHHHHHHHHHHHHHHH
Confidence            456899999999863            233 3579999999999999999999865   468888999999998766654


Q ss_pred             hhhhccCCCccccchhhhhhHHHHhhhcccc-ccchhhhhcccccchHHHH
Q psy12631         81 KNRRAKGYGYLGIWTAWHFVAVIYHRIRIGT-YLPTHLLVLLGLVDNRYLG  130 (185)
Q Consensus        81 Kn~i~k~~~~~~~~~~~~~v~~~f~r~~i~~-~ipV~kLvkg~~qDNlefl  130 (185)
                      +.                         |+.. .+.-+.++.|...-.|.|+
T Consensus        86 ~~-------------------------gi~l~~i~~~DIvdG~~k~iL~Lv  111 (131)
T d1aoaa1          86 AI-------------------------GCHVVNIGAEDLRAGKPHLVLGLL  111 (131)
T ss_dssp             HT-------------------------TCCCTTCCHHHHHTTCHHHHHHHH
T ss_pred             Hh-------------------------ccccCCCChhhhhcCCHHHHHHHH
Confidence            44                         4443 4677888888876666544

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.6e-05  Score=55.56  Aligned_cols=95  Identities=12%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             ccHHHHHHHhHHHhcCCcc--hhh----hcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         15 LSRHDMLHWVNDTLQSSFG--KIE----ELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        15 ~SR~ELL~WiN~~L~~~~t--KIE----el~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      ..+..||.|+++.+.. |.  +|.    ...+|-|+|.|++.+.|+.++++ ..+..   -++|++.   ||+       
T Consensus         6 s~k~~LL~W~~~~~~~-y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~~~l~~~~---~~~~~~~---a~~-------   71 (110)
T d1sh5a2           6 TAKEKLLLWSQRMVEG-YQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQT---NLENLDQ---AFS-------   71 (110)
T ss_dssp             CHHHHHHHHHHHHTTT-STTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHHSC---HHHHHHH---HHH-------
T ss_pred             CHHHHHHHHHHHHcCC-CCCeeccCCcccccCcHHHHHHHHHHCcccCChhhcCccC---HHHHHHH---HHH-------
Confidence            3456799999999852 21  233    47789999999999999999876 54443   3455544   333       


Q ss_pred             CCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHHH
Q psy12631         88 YGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHFV  138 (185)
Q Consensus        88 ~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~d  138 (185)
                                    ...+.+||++-+..+.++.++. |-.-..-.+..||.
T Consensus        72 --------------~Ae~~lgip~ll~~eD~~~~~p-D~~sv~~Yvs~ly~  107 (110)
T d1sh5a2          72 --------------VAERDLGVTRLLDPEDVDVPQP-DEKSIITYVSSLYD  107 (110)
T ss_dssp             --------------HHHHHHCCCCCCCHHHHSSSSC-CHHHHHHHHHHHHH
T ss_pred             --------------HHHHcCCCCCCCCHHHHccCCC-cHHHHHHHHHHHHH
Confidence                          1235678888888888887764 65554444444443

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.64  E-value=2.6e-05  Score=57.12  Aligned_cols=70  Identities=11%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             HHHHHHhHHHhcCCcch--hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccC
Q psy12631         18 HDMLHWVNDTLQSSFGK--IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKG   87 (185)
Q Consensus        18 ~ELL~WiN~~L~~~~tK--IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~   87 (185)
                      .|+..||.+.++.++..  .+.|.+|++-|++++.|.||+|+---.+...+....|...+=++.++.|++..
T Consensus         6 ~e~~~Wie~~~~~~~~~~~~~~L~dGv~LC~L~N~l~pg~i~ki~~~~~~f~~~eNI~~FL~~~~~~Gv~~~   77 (108)
T d1h67a_           6 RQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPH   77 (108)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHcCchhHHHHHHHHHhcCCCccCCCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence            58999999999988743  67799999999999999999987434566677888888887777777777653

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=9.5e-05  Score=55.08  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             CcccHHHHHHHhHHHhcC----Ccchh-hhcCCCchHHHhhHhhcCCcccee--ccCCCHHHHHHHHHHHHhhhhhhhhc
Q psy12631         13 ENLSRHDMLHWVNDTLQS----SFGKI-EELCSGAAYCQFMDMLFPGLYSIF--ILRNLLHTFVLHLILKAQQDSKNRRA   85 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~----~~tKI-Eel~tGAaYCQlmD~lfPg~Ipmk--Fna~~e~E~i~NfKlLQ~af~Kn~i~   85 (185)
                      ...++.-||.|+|..+..    +++.. ....+|-|||.|++.+.|+.++..  .....   -++|++.   ||+.    
T Consensus        14 ~~~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~~~l~~~~---~~~~~~~---a~~~----   83 (127)
T d1dxxa2          14 QTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQS---ATQRLEH---AFNI----   83 (127)
T ss_dssp             TCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCCC---HHHHHHH---HHHH----
T ss_pred             ccCHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccchhhcCcCC---HHHHHHH---HHHH----
Confidence            445567899999998853    22221 256799999999999999999874  33332   3344333   3331    


Q ss_pred             cCCCccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHHH
Q psy12631         86 KGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWHF  137 (185)
Q Consensus        86 k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f~  137 (185)
                                       .-+.+||++-+..+.+..+. .|-.-..-.+..||
T Consensus        84 -----------------Ae~~lgip~ll~~~d~~~~~-pD~ksi~~Yvs~l~  117 (127)
T d1dxxa2          84 -----------------ARYQLGIEKLLDPEDVDTTY-PDKKSILMYITSLF  117 (127)
T ss_dssp             -----------------HHHTTCCCCCCCHHHHSSSS-CCHHHHHHHHHHHH
T ss_pred             -----------------HHHhCCCCCcCCHHHhccCC-CcHHHHHHHHHHHH
Confidence                             12457888888888888776 36555444444443

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.42  E-value=0.00015  Score=64.15  Aligned_cols=85  Identities=11%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             CcccHHHHHHHhHHHhcC-----Ccchh--hhcCCCchHHHhhHhhcCCcccee-c-cCCCHHHHHHHHHHHHhhhhhhh
Q psy12631         13 ENLSRHDMLHWVNDTLQS-----SFGKI--EELCSGAAYCQFMDMLFPGLYSIF-I-LRNLLHTFVLHLILKAQQDSKNR   83 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~~-----~~tKI--Eel~tGAaYCQlmD~lfPg~Ipmk-F-na~~e~E~i~NfKlLQ~af~Kn~   83 (185)
                      ...+..+||.|+|..+..     +++..  .+..+|-|+|.|+|.+-|+.|++. + +...+.|-++|++..=++-    
T Consensus       398 ~~~~~~~lL~Wv~~~~~~~~~~~~I~nF~~~s~~DG~a~~~Li~~~~P~~i~~~~~~~~~~~e~~~~n~~~a~~~A----  473 (505)
T d1rt8a_         398 KTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIA----  473 (505)
T ss_dssp             -CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHH----
T ss_pred             chhHHHHHHHHHHHHhhccCCCceeeeCCCCCCcccHHHHHHHHHHCCCCcCHHHhcCCCChhhHHHHHHHHHHHH----
Confidence            456788999999998854     55554  368899999999999999999987 4 4456667888988764432    


Q ss_pred             hccCCCccccchhhhhhHHHHhhhccccccchhhhhccc
Q psy12631         84 RAKGYGYLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLG  122 (185)
Q Consensus        84 i~k~~~~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~  122 (185)
                                           +++||++.+..+.++.+.
T Consensus       474 ---------------------~~lgi~~ll~peDi~~~~  491 (505)
T d1rt8a_         474 ---------------------RKLGAVIFILPEDIVAVR  491 (505)
T ss_dssp             ---------------------HHTTCCCCCCHHHHHTTC
T ss_pred             ---------------------HHcCCCccCCHHHcCCCC
Confidence                                 356677777777777653

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00065  Score=48.52  Aligned_cols=88  Identities=9%  Similarity=-0.013  Sum_probs=65.0

Q ss_pred             HHHHHHHhHHHhc-C---Ccch-hhhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccCCCcc
Q psy12631         17 RHDMLHWVNDTLQ-S---SFGK-IEELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGYL   91 (185)
Q Consensus        17 R~ELL~WiN~~L~-~---~~tK-IEel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~~~~~   91 (185)
                      ++....|+|..|. .   .++. .+++++|.++|++++.+-|..+|- ..+++..+.++|..+.=+.+..          
T Consensus        10 ~~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~~~-~~~~~r~~~l~N~~~aL~~~k~----------   78 (111)
T d1dxxa1          10 KKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQN----------   78 (111)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcCCC-CCCCcHhhHHHHHHHHHHHHHH----------
Confidence            5678899999884 2   2333 478999999999999999998774 4678888999998886554443          


Q ss_pred             ccchhhhhhHHHHhhhcccc-ccchhhhhcccccchHHHH
Q psy12631         92 GIWTAWHFVAVIYHRIRIGT-YLPTHLLVLLGLVDNRYLG  130 (185)
Q Consensus        92 ~~~~~~~~v~~~f~r~~i~~-~ipV~kLvkg~~qDNlefl  130 (185)
                                     .++.. .|-.+.++.|...-.|.|+
T Consensus        79 ---------------~~~~~~~i~~~dI~~Gn~k~iL~ll  103 (111)
T d1dxxa1          79 ---------------NNVDLVNIGSTDIVDGNHKLTLGLI  103 (111)
T ss_dssp             ---------------TTCCCTTCCHHHHHTTCHHHHHHHH
T ss_pred             ---------------hCCcccCCCHHHHHcCCHHHHHHHH
Confidence                           33332 4778888888766666554

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=9.6e-05  Score=65.69  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             HHHHHHHhHHHhcC-----Ccchh-hhcCCCchHHHhhHhhcCCcccee-ccCCCHHHHHHHHHHHHhhhhhhhhccCCC
Q psy12631         17 RHDMLHWVNDTLQS-----SFGKI-EELCSGAAYCQFMDMLFPGLYSIF-ILRNLLHTFVLHLILKAQQDSKNRRAKGYG   89 (185)
Q Consensus        17 R~ELL~WiN~~L~~-----~~tKI-Eel~tGAaYCQlmD~lfPg~Ipmk-Fna~~e~E~i~NfKlLQ~af~Kn~i~k~~~   89 (185)
                      +.-||.|+|..+..     .++-. ++..+|-+||.|++.+-|+.+++. .+..   +-.+|.+..-++           
T Consensus       148 ~~~LL~W~n~~l~~~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~~~~~---~~~~~~~~a~~~-----------  213 (500)
T d1pxya_         148 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAK---DPLERAELVLSH-----------  213 (500)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCC---SHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHhccccCCCceeecCcCCchhHHHHHHHHHHHCCCccChhhcCcC---CHHHHHHHHHHH-----------
Confidence            34599999998842     22222 457779999999999999999876 5444   446777765444           


Q ss_pred             ccccchhhhhhHHHHhhhccccccchhhhhcccccchHHHHHHHHHH
Q psy12631         90 YLGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRYLGIWTAWH  136 (185)
Q Consensus        90 ~~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNleflqW~k~f  136 (185)
                                    .+++||++-+..+.++.+..+.|+.|+-.+...
T Consensus       214 --------------a~~lgip~~l~peDI~~~~~k~~l~~va~lf~~  246 (500)
T d1pxya_         214 --------------AERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHE  246 (500)
T ss_dssp             --------------HHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------------HHHhCCCccCCHHHhcCCcHHHHHHHHHHHHHh
Confidence                          356777788899999999988898887665433

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.00088  Score=59.33  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             CcccHHHHHHHhHHHhc-----CCcchh--hhcCCCchHHHhhHhhcCCcccee-cc-CCCHHHHHHHHHHH
Q psy12631         13 ENLSRHDMLHWVNDTLQ-----SSFGKI--EELCSGAAYCQFMDMLFPGLYSIF-IL-RNLLHTFVLHLILK   75 (185)
Q Consensus        13 ~~~SR~ELL~WiN~~L~-----~~~tKI--Eel~tGAaYCQlmD~lfPg~Ipmk-Fn-a~~e~E~i~NfKlL   75 (185)
                      ......+||.|+|..+.     .+++..  ....+|-|+|.|++.+-|+.|++. .. ...+.+-..|++..
T Consensus       389 ~~~~~~~LL~W~~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~~P~~id~~~~~~~~~~~~~~~N~~~a  460 (500)
T d1pxya_         389 KEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYI  460 (500)
T ss_dssp             -CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCCCCccCcCCCCCccccHHHHHHHHhhCCCccCHhhcCCCCCchHHHHHHHHH
Confidence            34567889999999884     445555  368899999999999999999987 54 44556667787754

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.39  E-value=0.0024  Score=56.22  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             HHHHHHHhHHHhcC-----Ccchh-hhcCCCchHHHhhHhhcCCccceeccCCCHHHHHHHHHHHHhhhhhhhhccCCCc
Q psy12631         17 RHDMLHWVNDTLQS-----SFGKI-EELCSGAAYCQFMDMLFPGLYSIFILRNLLHTFVLHLILKAQQDSKNRRAKGYGY   90 (185)
Q Consensus        17 R~ELL~WiN~~L~~-----~~tKI-Eel~tGAaYCQlmD~lfPg~IpmkFna~~e~E~i~NfKlLQ~af~Kn~i~k~~~~   90 (185)
                      +..||.|+|..+..     .++.. .+..+|-|+|-|++.+-|+.++++  +-.+.+-.+|....-++.           
T Consensus       155 ~~~LL~W~~~~~~~~~~~~~v~nf~~~~~dG~a~~~Li~~~~P~l~~~~--~~~~~~~~~n~~~a~~~a-----------  221 (505)
T d1rt8a_         155 EKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRA--PLQTTDVLQRAEQVLQNA-----------  221 (505)
T ss_dssp             HHHHHHHHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSG--GGGCCCHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHhhhcCCCceeccCCccccccHHHHHHHHHHCcCccChh--hcCcCCHHHHHHHHHHHH-----------
Confidence            56699999998852     22222 457889999999999999999976  222234556655543332           


Q ss_pred             cccchhhhhhHHHHhhhccccccchhhhhcccccchHH
Q psy12631         91 LGIWTAWHFVAVIYHRIRIGTYLPTHLLVLLGLVDNRY  128 (185)
Q Consensus        91 ~~~~~~~~~v~~~f~r~~i~~~ipV~kLvkg~~qDNle  128 (185)
                                    +++||++-+..+.++.+...-++-
T Consensus       222 --------------e~lgi~~~l~p~Div~~~~k~~l~  245 (505)
T d1rt8a_         222 --------------EKLDCRKYLTPTAMVAGNPKLNLA  245 (505)
T ss_dssp             --------------HTTTCCCSCCHHHHHTTCHHHHHH
T ss_pred             --------------HHcCCCccCCHHHhcCCChhhHHH
Confidence                          356666667777777765444443

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.17  E-value=0.022  Score=43.74  Aligned_cols=62  Identities=13%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             HHHHHhHHH-hcCCcchhhhcCCCchHHHhhHhhcCCccceeccCC--CHH-----HHHHHHHHHHhhhh
Q psy12631         19 DMLHWVNDT-LQSSFGKIEELCSGAAYCQFMDMLFPGLYSIFILRN--LLH-----TFVLHLILKAQQDS   80 (185)
Q Consensus        19 ELL~WiN~~-L~~~~tKIEel~tGAaYCQlmD~lfPg~IpmkFna~--~e~-----E~i~NfKlLQ~af~   80 (185)
                      .|+.|+|.. +....+.+|+|.+|++.-|+|..|-|...+-.|..+  .+.     --++|+|.+-+.+.
T Consensus        13 aLv~W~~tf~~~~~~~~~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~nw~lr~~NLk~i~~~i~   82 (164)
T d1wixa_          13 SLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGIT   82 (164)
T ss_dssp             HHHHHHTTCCCSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccCCHHHHhchHHHHHHHHHhCccccCchhhhcccccccccHHHHHHHHHHHHHHHH
Confidence            699999995 345577899999999999999999997555433221  111     25789988866543