Psyllid ID: psy12645


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MANWPECRDSSFKPGRDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVKKPKKDGAAPQVTREKNGHANNSKPKTN
ccccccccccHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccHHHHEEEEHHHHHHHHHcccEEEEEEccccccEEEEEEEcccHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
cccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccc
manwpecrdssfkpgrdssfklgrdrpsysLQAIIIIINVAssmpkiqamdgawyrdyslrcepvdysttpkaMRVARGCWWYFFSKFTEFFDTFFFVMRkkydqvstLHVIHhgvmplstwfgvkftpgghstffGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYketyvkkpkkdgaapqvtreknghannskpktn
manwpecrdssfkpgrdssfklgrdrpsySLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVKKPKkdgaapqvtreknghannskpktn
MANWPECRDSSFKPGRDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYffskfteffdtfffVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVKKPKKDGAAPQVTREKNGHANNSKPKTN
****************************YSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYV****************************
MANWPECRDSSFKPGRDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYK********************************
*************PGRDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVK***************************
*********SSF*P*RDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVKKP*************************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MANWPECRDSSFKPGRDSSFKLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFIQFVCILIHAFQLFFIECDYPKAFAWWIGGHAVMFYFLFSNFYKETYVKKPKKDGAAPQVTREKNGHANNSKPKTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q1HRV8358 Elongation of very long c N/A N/A 0.747 0.455 0.511 3e-48
D4ADY9281 Elongation of very long c yes N/A 0.798 0.619 0.361 2e-29
A0JNC4281 Elongation of very long c yes N/A 0.798 0.619 0.361 2e-29
Q9D2Y9281 Elongation of very long c yes N/A 0.798 0.619 0.356 1e-28
Q9BW60279 Elongation of very long c yes N/A 0.885 0.691 0.316 3e-27
A1L3X0281 Elongation of very long c no N/A 0.651 0.505 0.388 1e-26
Q9GZR5314 Elongation of very long c no N/A 0.889 0.617 0.319 8e-26
Q9EQC4312 Elongation of very long c no N/A 0.903 0.631 0.296 4e-25
Q9JLJ5279 Elongation of very long c no N/A 0.885 0.691 0.282 4e-25
Q3S8M4314 Elongation of very long c no N/A 0.885 0.614 0.311 9e-25
>sp|Q1HRV8|ELVL1_AEDAE Elongation of very long chain fatty acids protein AAEL008004 OS=Aedes aegypti GN=AAEL008004 PE=2 SV=2 Back     alignment and function desciption
 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 130/213 (61%), Gaps = 50/213 (23%)

Query: 21  KLGRDRPSYSLQAIIIIINVASSMPKIQAMDGAWY-----------RDYSLRCEPVDYST 69
           +L  +R  + L+  +I+ N       +Q +  AW              Y+ RC+PVDYS 
Sbjct: 52  RLMENRKPFQLRNTLILYNF------VQVVFSAWLFYEIGISGWLTGHYNFRCQPVDYSN 105

Query: 70  TPKAMRVARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTP 129
            PK +R+   CWWY+FSKFTEFFDTFFFVMRKK  QVSTLHVIHHG MP+S WFGVKFTP
Sbjct: 106 HPKTLRMVHACWWYYFSKFTEFFDTFFFVMRKKTSQVSTLHVIHHGCMPMSVWFGVKFTP 165

Query: 130 GGHSTFFGLLNTF---------------------------------IQFVCILIHAFQLF 156
           GGHSTFFGLLNTF                                 +QFV I++HAFQL 
Sbjct: 166 GGHSTFFGLLNTFVHIVMYTYYLFTAMGPQFQKYLWWKKYLTSLQMVQFVAIMVHAFQLL 225

Query: 157 FIECDYPKAFAWWIGGHAVMFYFLFSNFYKETY 189
           FI+C+YPKAF WWIG HAVMF FLF+ FY+ TY
Sbjct: 226 FIDCNYPKAFVWWIGMHAVMFLFLFNEFYQSTY 258




Could be implicated in synthesis of very long chain fatty acids.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: nEC: 8
>sp|D4ADY9|ELOV7_RAT Elongation of very long chain fatty acids protein 7 OS=Rattus norvegicus GN=Elovl7 PE=3 SV=1 Back     alignment and function description
>sp|A0JNC4|ELOV7_BOVIN Elongation of very long chain fatty acids protein 7 OS=Bos taurus GN=ELOVL7 PE=2 SV=1 Back     alignment and function description
>sp|Q9D2Y9|ELOV7_MOUSE Elongation of very long chain fatty acids protein 7 OS=Mus musculus GN=Elovl7 PE=2 SV=1 Back     alignment and function description
>sp|Q9BW60|ELOV1_HUMAN Elongation of very long chain fatty acids protein 1 OS=Homo sapiens GN=ELOVL1 PE=1 SV=1 Back     alignment and function description
>sp|A1L3X0|ELOV7_HUMAN Elongation of very long chain fatty acids protein 7 OS=Homo sapiens GN=ELOVL7 PE=1 SV=1 Back     alignment and function description
>sp|Q9GZR5|ELOV4_HUMAN Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1 Back     alignment and function description
>sp|Q9EQC4|ELOV4_MOUSE Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=1 SV=2 Back     alignment and function description
>sp|Q9JLJ5|ELOV1_MOUSE Elongation of very long chain fatty acids protein 1 OS=Mus musculus GN=Elovl1 PE=2 SV=1 Back     alignment and function description
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
242023582 357 elongation of very long chain fatty acid 0.889 0.543 0.506 1e-60
156553618 335 PREDICTED: elongation of very long chain 0.802 0.522 0.537 1e-58
91090562 325 PREDICTED: similar to CG31522 CG31522-PB 0.775 0.52 0.543 8e-58
389612557259 elongase, partial [Papilio xuthus] 0.784 0.660 0.524 3e-57
383849800 347 PREDICTED: elongation of very long chain 0.766 0.481 0.546 3e-57
328696664307 PREDICTED: elongation of very long chain 0.885 0.628 0.502 1e-56
328701144 348 PREDICTED: elongation of very long chain 0.788 0.494 0.602 1e-56
383849796 325 PREDICTED: elongation of very long chain 0.908 0.609 0.495 2e-56
307188868297 Elongation of very long chain fatty acid 0.889 0.653 0.497 2e-56
340722277 321 PREDICTED: elongation of very long chain 0.908 0.616 0.478 2e-56
>gi|242023582|ref|XP_002432211.1| elongation of very long chain fatty acids protein, putative [Pediculus humanus corporis] gi|212517608|gb|EEB19473.1| elongation of very long chain fatty acids protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 148/235 (62%), Gaps = 41/235 (17%)

Query: 21  KLGRDRPSYSLQAIIIIIN----VASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRV 76
           KL  +R  + L+ ++II N    + S+    + +   W+  YS RC+PVDYST+P AMR+
Sbjct: 63  KLMENRKPFELKNVLIIYNFIQVIFSTWLFYECIQSGWFTFYSFRCQPVDYSTSPIAMRM 122

Query: 77  ARGCWWYFFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFF 136
           A GCWWYF SKFTEF DT FFV+RKK D +STLHV HH VMP+S WFGVKFTPGGHSTFF
Sbjct: 123 ASGCWWYFISKFTEFLDTIFFVLRKKNDHISTLHVTHHAVMPMSVWFGVKFTPGGHSTFF 182

Query: 137 GLLNTF---------------------------------IQFVCILIHAFQLFFIECDYP 163
           GLLNTF                                 IQFV ++IHAFQL FIEC+YP
Sbjct: 183 GLLNTFVHIIMYSYYMFSAMGPQYQKYLWWKKYLTALQMIQFVLVMIHAFQLLFIECNYP 242

Query: 164 KAFAWWIGGHAVMFYFLFSNFYKETYVKKPKKDGAAPQVTREKNGHANNSKPKTN 218
           +AF WWIG HA+MFYFLF++FYK+ Y+KK +    A ++  EK    +    KTN
Sbjct: 243 QAFVWWIGLHAIMFYFLFADFYKQAYLKKER----AKKIANEKKKSEDEKDVKTN 293




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553618|ref|XP_001600048.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91090562|ref|XP_971599.1| PREDICTED: similar to CG31522 CG31522-PB [Tribolium castaneum] gi|270013347|gb|EFA09795.1| hypothetical protein TcasGA2_TC011937 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|389612557|dbj|BAM19709.1| elongase, partial [Papilio xuthus] Back     alignment and taxonomy information
>gi|383849800|ref|XP_003700524.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328696664|ref|XP_001943200.2| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like isoform 1 [Acyrthosiphon pisum] gi|328696666|ref|XP_003240093.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701144|ref|XP_001952818.2| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383849796|ref|XP_003700522.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307188868|gb|EFN73421.1| Elongation of very long chain fatty acids protein AAEL008004 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340722277|ref|XP_003399534.1| PREDICTED: elongation of very long chain fatty acids protein AAEL008004-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
FB|FBgn0037534329 CG2781 [Drosophila melanogaste 0.669 0.443 0.470 2.8e-38
UNIPROTKB|Q1HRV8 358 AAEL008004 "Elongation of very 0.669 0.407 0.441 5.4e-31
FB|FBgn0051522 365 CG31522 [Drosophila melanogast 0.669 0.4 0.435 1.8e-30
FB|FBgn0051523 354 CG31523 [Drosophila melanogast 0.669 0.412 0.398 7.1e-29
UNIPROTKB|F1SKV9281 ELOVL7 "Uncharacterized protei 0.426 0.330 0.448 1e-23
ZFIN|ZDB-GENE-030131-5485282 elovl7b "ELOVL family member 7 0.669 0.517 0.372 3.4e-22
ZFIN|ZDB-GENE-030131-6149289 elovl7a "ELOVL family member 7 0.669 0.505 0.333 7e-22
UNIPROTKB|A0JNC4281 ELOVL7 "Elongation of very lon 0.665 0.516 0.363 9e-22
UNIPROTKB|G5E592260 ELOVL7 "Elongation of very lon 0.665 0.557 0.363 9e-22
ZFIN|ZDB-GENE-050522-453264 zgc:112263 "zgc:112263" [Danio 0.669 0.553 0.339 9e-22
FB|FBgn0037534 CG2781 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 389 (142.0 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 72/153 (47%), Positives = 96/153 (62%)

Query:    21 KLGRDRPSYSLQAIIIIINVA----SSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRV 76
             KL  +R  + L+ ++I+ N A    S+    ++  G W   Y+LRCEPV+YS +PKA+R 
Sbjct:    52 KLMENRKPFELRKVLIVYNAAQVIFSAWLFYESCIGGWLNGYNLRCEPVNYSYSPKAIRT 111

Query:    77 ARGCWWYXXXXXXXXXXXXXXVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFF 136
             A GCWWY              VMRK+YDQVSTLHVIHHG+MP+S W+GVKFTPGGHSTFF
Sbjct:   112 AEGCWWYYFSKFTEFFDTFFFVMRKRYDQVSTLHVIHHGIMPVSVWWGVKFTPGGHSTFF 171

Query:   137 GLLNTFIQFVCILIHAFQLFFIECDYPKAFAWW 169
             G LNTF+    I ++A+ +        + + WW
Sbjct:   172 GFLNTFVH---IFMYAYYMLAAMGPKVQKYLWW 201


GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=ISS
GO:0030497 "fatty acid elongation" evidence=ISS
GO:0009922 "fatty acid elongase activity" evidence=ISS
GO:0003843 "1,3-beta-D-glucan synthase activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|Q1HRV8 AAEL008004 "Elongation of very long chain fatty acids protein AAEL008004" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0051522 CG31522 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0051523 CG31523 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKV9 ELOVL7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5485 elovl7b "ELOVL family member 7, elongation of long chain fatty acids (yeast) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6149 elovl7a "ELOVL family member 7, elongation of long chain fatty acids (yeast) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A0JNC4 ELOVL7 "Elongation of very long chain fatty acids protein 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G5E592 ELOVL7 "Elongation of very long chain fatty acids protein 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-453 zgc:112263 "zgc:112263" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A0JNC4ELOV7_BOVIN2, ., 3, ., 1, ., n, 80.36150.79810.6192yesN/A
Q9BW60ELOV1_HUMAN2, ., 3, ., 1, ., n, 80.31640.88530.6917yesN/A
D4ADY9ELOV7_RAT2, ., 3, ., 1, ., n, 80.36150.79810.6192yesN/A
Q9D2Y9ELOV7_MOUSE2, ., 3, ., 1, ., n, 80.35680.79810.6192yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
pfam01151244 pfam01151, ELO, GNS1/SUR4 family 2e-43
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family Back     alignment and domain information
 Score =  145 bits (369), Expect = 2e-43
 Identities = 70/215 (32%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 24  RDRPSYSLQAIIIIIN----VASSMPKIQAMDGAWYRDYSLRCEPVDYSTTPKAMRVARG 79
           R+R  + L+ ++I+ N    + S       + GA +         V YS  P A+R+   
Sbjct: 28  RNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLAGAGWGRGLYLALCVCYSFDPGAIRMGLV 87

Query: 80  CWWY--FFSKFTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFG 137
            +WY  F SKF E  DT F V+RKK  Q+S LHV HH  M L +W G+K+ PGGH  F  
Sbjct: 88  GFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHFWFIA 147

Query: 138 LLNTF--------------------------------IQFVCILIHAFQLFFIE----CD 161
           LLN+F                                IQFV  L H     +      C 
Sbjct: 148 LLNSFVHVIMYFYYFLAALGARGLPVWWKKYITQLQIIQFVLGLAHVGYALYNYTKGGCG 207

Query: 162 YPKAFAWWIG-GHAVMFYFLFSNFYKETYVKKPKK 195
            P   A  +G  + V + FLF NFY ++Y K  KK
Sbjct: 208 GPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKK 242


Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 affects plasma membrane H+-ATPase activity, and may act on a glucose-signaling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1. Length = 244

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
KOG3071|consensus274 100.0
PF01151250 ELO: GNS1/SUR4 family; InterPro: IPR002076 This gr 100.0
PTZ00251272 fatty acid elongase; Provisional 100.0
KOG3072|consensus282 100.0
>KOG3071|consensus Back     alignment and domain information
Probab=100.00  E-value=1.6e-50  Score=352.96  Aligned_cols=187  Identities=36%  Similarity=0.556  Sum_probs=168.6

Q ss_pred             cccccccccccCCCCCccchhHHHHHHH----HhHHHHHhhhHhhhc-cCceeeecCCCCCCccccchhhhhhhhhhhhh
Q psy12645         13 KPGRDSSFKLGRDRPSYSLQAIIIIINV----ASSMPKIQAMDGAWY-RDYSLRCEPVDYSTTPKAMRVARGCWWYFFSK   87 (218)
Q Consensus        13 ~~~~~~~~~~Mk~Rkp~~Lk~~l~~yN~----ls~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~f~lSK   87 (218)
                      .+.+++||++|+||||++||.++.+||+    +|++++.+.....+. +.|++.|++++.++++..+++.+++|+||+||
T Consensus        41 l~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsK  120 (274)
T KOG3071|consen   41 LFVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSK  120 (274)
T ss_pred             HHHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEEEecCCCCCCcceeehHHHHHHHHHH
Confidence            4678999999999999999999999999    677776666665564 46999999999889999999999999999999


Q ss_pred             hhhhhhheeeeeecCCCceeEEeeeccchhhhhhhhhceecCCcceeehhhhhhHH------------------------
Q psy12645         88 FTEFFDTFFFVMRKKYDQVSTLHVIHHGVMPLSTWFGVKFTPGGHSTFFGLLNTFI------------------------  143 (218)
Q Consensus        88 ~~El~DTvf~VLRKK~~qlsFLHvYHH~~~~~~~w~~~~~~~~g~~~~~~~lNs~V------------------------  143 (218)
                      ++||+||+|||||||++||||||+|||++|++.+|.++++.++|++++.+.+|++|                        
T Consensus       121 flel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWk  200 (274)
T KOG3071|consen  121 FLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWK  200 (274)
T ss_pred             HHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHH
Confidence            99999999999999999999999999999999999999999889999999999999                        


Q ss_pred             ---------HHHHHHhhhhhe-ec-cCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy12645        144 ---------QFVCILIHAFQL-FF-IECDYPKA-FAWWIGGHAVMFYFLFSNFYKETYVKKPKKDGAA  199 (218)
Q Consensus       144 ---------QFv~~~~~~~~~-~~-~~C~~~~~-~~~~~~~~~~s~l~LF~nFy~~sY~k~~~~~~~~  199 (218)
                               ||++..+|..+. ++ +||.+|++ +++.+..+.++|+.||+|||+|+|+|++++++++
T Consensus       201 ky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~  268 (274)
T KOG3071|consen  201 KYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKK  268 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhh
Confidence                     777888888877 55 58999998 7788789999999999999999999977666554



>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established Back     alignment and domain information
>PTZ00251 fatty acid elongase; Provisional Back     alignment and domain information
>KOG3072|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00