Psyllid ID: psy12666

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MVTVEALRNGITPSPSSSVSESLDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVKKKVEALRNGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFNLNIESLQGFDCNVDEVY
ccHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccccccccHHHHHEEEEEEEEccccccccccccccccccccccccccccccccccccHHHHcccccccccEEcccccccccccEEEcccccccccccccccccccHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccc
ccHHHHHHccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEccccccccHccccccHHHcccccccEEcccccccccccHHHcccccccEEEEEccccccccEEEEcccccccccccccEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEcc
mvtvealrngitpspsssvsesldlfpedspihfqlrclkitptqvdhfendnFFVNKLIVKCQivnpyldsskafdkpchmhelwpgplleikfrpanhyqnsirHNLSLHSKFMRVqnegtgksswwmlnpdakagksARRRATSMETSKFEKRRGRVKKKVEALRngitpspsssvseirttdsvphptlppvglifspdyrqrassnasscgrlspipaqespawlppysnpylgaeQLAGSLETTmklssdnflpypsppppygapppypcphhlvnscnchnhpavkqqsispsyhnspspsppatVMGQVLSSLnssvlddfnlnieslqgfdcnvdevy
mvtvealrngitpspsssvseSLDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEgtgksswwmlnpdakagksarrratsmetskfekrrgrvkkkvealrngitpspsssvseiRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFNLNIeslqgfdcnvdevy
MVTVEALRNGITpspsssvsesLDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSkfekrrgrvkkkveALRNGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLpypsppppygapppypcpHHLVNSCNCHNHPAVKQQsispsyhnspspsppATVMGQvlsslnssvlddfnlnIESLQGFDCNVDEVY
******************************PIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQ*******SWWML***************************************************************************************************************************************************HLVNSCNC*************************************SVLDDFNLNIESLQGFDCN*****
**T*EA**N*************LDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQ***TGKSSWWMLN**********************************************************************************************************************************************************************************************SSVLDDFNLNIESLQGFDCNVDEVY
**********************LDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD*****************************VEALRNG****************SVPHPTLPPVGLIFSPDYR************LSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAV******************ATVMGQVLSSLNSSVLDDFNLNIESLQGFDCNVDEVY
**********************LDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAK*****************************************************************************************SPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFNLNIESLQGFDCNVDEVY
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MVTVEALRNGITPSPSSSVSESLDLFPEDSPIHFQLRCLKITPTQVDHFENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPGPLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVKKKVEALRNGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASSCGRLSPIPAQESPAWLPPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYGAPPPYPCPHHLVNSCNCHNHPAVKQQSISPSYHNSPSPSPPATVMGQVLSSLNSSVLDDFNLNIESLQGFDCNVDEVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
B4JSC2 630 Forkhead box protein O OS N/A N/A 0.443 0.244 0.610 1e-46
B4NFR1 628 Forkhead box protein O OS N/A N/A 0.443 0.245 0.610 1e-45
B4KBF6 563 Forkhead box protein O OS N/A N/A 0.443 0.273 0.610 2e-45
B3LYS5 600 Forkhead box protein O OS N/A N/A 0.435 0.251 0.616 6e-45
Q95V55 613 Forkhead box protein O OS yes N/A 0.435 0.246 0.6 2e-44
B4MB78 609 Forkhead box protein O OS N/A N/A 0.443 0.252 0.610 3e-44
B4HF64 609 Forkhead box protein O OS N/A N/A 0.703 0.400 0.394 4e-44
B3P0K6 615 Forkhead box protein O OS N/A N/A 0.703 0.396 0.405 4e-44
B4G4S8 629 Forkhead box protein O OS N/A N/A 0.435 0.240 0.593 1e-43
B4PTD3 628 Forkhead box protein O OS N/A N/A 0.365 0.202 0.688 1e-43
>sp|B4JSC2|FOXO_DROGR Forkhead box protein O OS=Drosophila grimshawi GN=foxo PE=3 SV=1 Back     alignment and function desciption
 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 118/172 (68%), Gaps = 18/172 (10%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRV 160
           ++NSIRHNLSLHS+FMRVQNEGTGKSSWWMLNPDAK GKS RRRA SMETS++EKRRGR 
Sbjct: 141 WKNSIRHNLSLHSRFMRVQNEGTGKSSWWMLNPDAKPGKSVRRRAASMETSRYEKRRGRA 200

Query: 161 KKKVEALR-------NGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNAS 213
           KK+VEALR       N  TPSPSSSVSE    D  P   L   G   SPD+RQRASSNAS
Sbjct: 201 KKRVEALRQAGAVGLNDATPSPSSSVSE--GLDHFPESPLHSGGFQLSPDFRQRASSNAS 258

Query: 214 SCGRLSPIPAQE-SPAW--LPPYSNPYL------GAEQLAGSLETTMKLSSD 256
           SCGRLSPI A +  P W     Y N  +        +QL GS+   +KL +D
Sbjct: 259 SCGRLSPIRALDLEPDWGYSVDYQNTTMTQAQAQALDQLTGSMADELKLQND 310
Transcription factor involved in the regulation of the insulin signaling pathway. Consistently activates both the downstream target Thor\d4EBP and the feedback control target InR. Involved in negative regulation of the cell cycle, modulating cell growth and proliferation. In response to cellular stresses, such as nutrient deprivation or increased levels of reactive oxygen species, foxo is activated and inhibits growth through the action of target genes such as Thor. Foxo activated in the adult fat body can regulate lifespan in adults; an insulin peptide itself may function as one secondary messenger of insulin-regulated aging. Also regulates Lip4, homolog of human acid lipases, thereby acting as a key modulator of lipid metabolism by insulin signaling and integrates insulin responses to glucose and lipid homeostasis.
Drosophila grimshawi (taxid: 7222)
>sp|B4NFR1|FOXO_DROWI Forkhead box protein O OS=Drosophila willistoni GN=foxo PE=3 SV=1 Back     alignment and function description
>sp|B4KBF6|FOXO_DROMO Forkhead box protein O OS=Drosophila mojavensis GN=foxo PE=3 SV=1 Back     alignment and function description
>sp|B3LYS5|FOXO_DROAN Forkhead box protein O OS=Drosophila ananassae GN=foxo PE=3 SV=2 Back     alignment and function description
>sp|Q95V55|FOXO_DROME Forkhead box protein O OS=Drosophila melanogaster GN=foxo PE=1 SV=1 Back     alignment and function description
>sp|B4MB78|FOXO_DROVI Forkhead box protein O OS=Drosophila virilis GN=foxo PE=3 SV=1 Back     alignment and function description
>sp|B4HF64|FOXO_DROSE Forkhead box protein O OS=Drosophila sechellia GN=foxo PE=3 SV=2 Back     alignment and function description
>sp|B3P0K6|FOXO_DROER Forkhead box protein O OS=Drosophila erecta GN=foxo PE=3 SV=2 Back     alignment and function description
>sp|B4G4S8|FOXO_DROPE Forkhead box protein O OS=Drosophila persimilis GN=foxo PE=3 SV=2 Back     alignment and function description
>sp|B4PTD3|FOXO_DROYA Forkhead box protein O OS=Drosophila yakuba GN=foxo PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
384071177 523 FoxO protein [Blattella germanica] 0.671 0.445 0.466 4e-58
242010146362 forkhead protein/ forkhead protein domai 0.677 0.649 0.495 5e-58
340724594 566 PREDICTED: forkhead box protein O-like [ 0.685 0.420 0.460 2e-55
350406202 553 PREDICTED: forkhead box protein O-like [ 0.685 0.430 0.457 2e-54
270002109 599 hypothetical protein TcasGA2_TC001063 [T 0.703 0.407 0.449 4e-54
91077376 495 PREDICTED: similar to forkhead box subgr 0.700 0.490 0.447 2e-53
380018029 556 PREDICTED: LOW QUALITY PROTEIN: forkhead 0.691 0.431 0.452 8e-52
328784251 556 PREDICTED: forkhead box protein O [Apis 0.691 0.431 0.452 9e-52
380713848 512 forkhead box sub-group O [Bombyx mori] 0.688 0.466 0.452 9e-52
345486916 584 PREDICTED: forkhead box protein O-like [ 0.587 0.349 0.531 6e-51
>gi|384071177|emb|CCF23214.1| FoxO protein [Blattella germanica] Back     alignment and taxonomy information
 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/341 (46%), Positives = 184/341 (53%), Gaps = 108/341 (31%)

Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRV 160
           ++NSIRHNLSLH++FMRVQNEGTGKSSWWM+NPDAK GKSARRRATSMETSKFEKRRGRV
Sbjct: 130 WKNSIRHNLSLHNRFMRVQNEGTGKSSWWMINPDAKPGKSARRRATSMETSKFEKRRGRV 189

Query: 161 KKKVEALRNGI------TPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNASS 214
           KKKV+ALRNG+      TPSPSSS+SE    D  P   L       SPD+R RASSNASS
Sbjct: 190 KKKVDALRNGLQAATDATPSPSSSISE--GLDLFPDSPLHNTSFQLSPDFRPRASSNASS 247

Query: 215 CGRLSPIPA-QESPAWL--PPYSNPYLGAEQLAGSLETTMKLSSDNFLPYPSPPPPYG-- 269
           CGRLSPIPA    P W    PY+  Y G EQLAG+L   MKL    FL        YG  
Sbjct: 248 CGRLSPIPAVLGEPDWGSPSPYTGGY-GPEQLAGNLAEGMKLQGGEFLQT------YGGS 300

Query: 270 -----------------------------------APPPYP---CPHHLVNSCNCHNHPA 291
                                              A  PY    C  H +  C+CH    
Sbjct: 301 NGGQQQAQPPPPPYQPTYDFSGGSRLGQHDLSTLHAASPYGLSQCHLHRMQPCSCH---- 356

Query: 292 VKQQ-----SISPSY-HNSPSPSP------------------------------------ 309
           ++QQ      +SPSY  + PSP P                                    
Sbjct: 357 LQQQQHSPAGMSPSYPQSEPSPDPMSGQQQNPPAPQFMPPRALRPPPPGGSNHSESPPDT 416

Query: 310 --PATVMGQVLSSL-NSSVLDDFNLNIESLQ-GFDCNVDEV 346
             P+T+MGQ++ +L NS++LDD NLNIE+L  GFDCNVDEV
Sbjct: 417 PTPSTMMGQLMGALNNSTLLDDLNLNIETLHGGFDCNVDEV 457

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242010146|ref|XP_002425837.1| forkhead protein/ forkhead protein domain, putative [Pediculus humanus corporis] gi|212509770|gb|EEB13099.1| forkhead protein/ forkhead protein domain, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340724594|ref|XP_003400666.1| PREDICTED: forkhead box protein O-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350406202|ref|XP_003487689.1| PREDICTED: forkhead box protein O-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|270002109|gb|EEZ98556.1| hypothetical protein TcasGA2_TC001063 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91077376|ref|XP_975200.1| PREDICTED: similar to forkhead box subgroup O [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380018029|ref|XP_003692941.1| PREDICTED: LOW QUALITY PROTEIN: forkhead box protein O-like [Apis florea] Back     alignment and taxonomy information
>gi|328784251|ref|XP_001122804.2| PREDICTED: forkhead box protein O [Apis mellifera] Back     alignment and taxonomy information
>gi|380713848|gb|AFD99125.1| forkhead box sub-group O [Bombyx mori] Back     alignment and taxonomy information
>gi|345486916|ref|XP_001607658.2| PREDICTED: forkhead box protein O-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
UNIPROTKB|B4JSC2 630 foxo "Forkhead box protein O" 0.443 0.244 0.552 1.8e-38
UNIPROTKB|B4MB78 609 foxo "Forkhead box protein O" 0.443 0.252 0.552 1.8e-38
UNIPROTKB|B4KBF6 563 foxo "Forkhead box protein O" 0.443 0.273 0.552 1.9e-38
UNIPROTKB|B4NFR1 628 foxo "Forkhead box protein O" 0.443 0.245 0.552 4.8e-36
UNIPROTKB|B3LYS5 600 foxo "Forkhead box protein O" 0.435 0.251 0.556 2.1e-35
FB|FBgn0038197 613 foxo "forkhead box, sub-group 0.435 0.246 0.541 2.5e-34
UNIPROTKB|B3P0K6 615 foxo "Forkhead box protein O" 0.383 0.216 0.602 3.3e-34
UNIPROTKB|B4PTD3 628 foxo "Forkhead box protein O" 0.383 0.211 0.602 3.7e-34
UNIPROTKB|B4HF64 609 foxo "Forkhead box protein O" 0.435 0.247 0.535 1.5e-33
UNIPROTKB|B4G4S8 629 foxo "Forkhead box protein O" 0.354 0.195 0.624 2.9e-33
UNIPROTKB|B4JSC2 foxo "Forkhead box protein O" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
 Score = 397 (144.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
 Identities = 95/172 (55%), Positives = 105/172 (61%)

Query:   101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPDAKAGKSARRRATSMETSXXXXXXXXX 160
             ++NSIRHNLSLHS+FMRVQNEGTGKSSWWMLNPDAK GKS RRRA SMETS         
Sbjct:   141 WKNSIRHNLSLHSRFMRVQNEGTGKSSWWMLNPDAKPGKSVRRRAASMETSRYEKRRGRA 200

Query:   161 XXXXXALR-------NGITPSPSSSVSEIRTTDSVPHPTLPPVGLIFSPDYRQRASSNAS 213
                  ALR       N  TPSPSSSVSE    D  P   L   G   SPD+RQRASSNAS
Sbjct:   201 KKRVEALRQAGAVGLNDATPSPSSSVSE--GLDHFPESPLHSGGFQLSPDFRQRASSNAS 258

Query:   214 SCGRLSPIPAQE-SPAW--LPPYSNPYL------GAEQLAGSLETTMKLSSD 256
             SCGRLSPI A +  P W     Y N  +        +QL GS+   +KL +D
Sbjct:   259 SCGRLSPIRALDLEPDWGYSVDYQNTTMTQAQAQALDQLTGSMADELKLQND 310
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008285 "negative regulation of cell proliferation" evidence=ISS
GO:0010259 "multicellular organismal aging" evidence=ISS
GO:0019216 "regulation of lipid metabolic process" evidence=ISS
GO:0030308 "negative regulation of cell growth" evidence=ISS
GO:0042593 "glucose homeostasis" evidence=ISS
GO:0046627 "negative regulation of insulin receptor signaling pathway" evidence=ISS
UNIPROTKB|B4MB78 foxo "Forkhead box protein O" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|B4KBF6 foxo "Forkhead box protein O" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
UNIPROTKB|B4NFR1 foxo "Forkhead box protein O" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
UNIPROTKB|B3LYS5 foxo "Forkhead box protein O" [Drosophila ananassae (taxid:7217)] Back     alignment and assigned GO terms
FB|FBgn0038197 foxo "forkhead box, sub-group O" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B3P0K6 foxo "Forkhead box protein O" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|B4PTD3 foxo "Forkhead box protein O" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|B4HF64 foxo "Forkhead box protein O" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
UNIPROTKB|B4G4S8 foxo "Forkhead box protein O" [Drosophila persimilis (taxid:7234)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q298W7FOXO_DROPSNo assigned EC number0.59300.43510.2344yesN/A
Q95V55FOXO_DROMENo assigned EC number0.60.43510.2463yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
smart0033989 smart00339, FH, FORKHEAD 1e-12
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 6e-11
pfam0025096 pfam00250, Fork_head, Fork head domain 1e-06
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information 
 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 95  FRPAN-HYQNSIRHNLSLHSKFMRVQNEGT--GKSSWWMLNPDAK 136
           +R     +QNSIRHNLSL+  F++V  EG   GK S+W L+P A+
Sbjct: 38  YRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPAAE 82

FORKHEAD, also known as a "winged helix". Length = 89
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
cd0005978 FH Forkhead (FH), also known as a "winged helix". 99.96
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 99.96
KOG3563|consensus454 99.96
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 99.95
KOG2294|consensus454 99.94
KOG3562|consensus277 99.94
KOG4385|consensus581 99.76
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.64
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.14
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information 
Probab=99.96  E-value=3.8e-31  Score=210.52  Aligned_cols=71  Identities=34%  Similarity=0.551  Sum_probs=68.5

Q ss_pred             CCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--CC
Q psy12666         51 NDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--GT  123 (347)
Q Consensus        51 KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~~  123 (347)
                      ||||||++||++||+++|+        ++|||+|||+|     |||+.   +..|||||||||||+|+||+||+|+  +.
T Consensus         1 kP~~sY~~LI~~Ai~~sp~--------~~lTL~eIy~~I~~~~pyyr~---~~~gWknSIRHnLS~n~~F~kv~r~~~~~   69 (78)
T cd00059           1 KPPYSYSALIAMAIQSSPE--------KRLTLSEIYKWISDNFPYFRD---APAGWQNSIRHNLSLNKCFVKVPREPDEP   69 (78)
T ss_pred             CCCCCHHHHHHHHHHhCCC--------CCeeHHHHHHHHHHhCCcccc---CCCCCccceeEecccccceEECCCCCCCC
Confidence            8999999999999999999        99999999999     99998   7899999999999999999999998  78


Q ss_pred             CccceeEeC
Q psy12666        124 GKSSWWMLN  132 (347)
Q Consensus       124 GKG~~W~l~  132 (347)
                      |||+||+||
T Consensus        70 gkg~~W~i~   78 (78)
T cd00059          70 GKGSYWTLD   78 (78)
T ss_pred             CCCCeeeeC
Confidence            999999986

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>KOG3563|consensus Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 1e-17
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 5e-16
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 1e-15
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 1e-15
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 4e-14
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 3e-11
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 7e-04
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 46/50 (92%), Gaps = 1/50 (2%)
Query: 101 YQNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATSME 149
           ++NSIRHNLSLHSKF+RVQNEGTGKSSWWMLNP+  K+GKS RRRA SM+
Sbjct: 60  WKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPRRRAASMD 109
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 3e-18
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 3e-17
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 8e-15
3bpy_A85 FORK head domain, forkhead transcription factor FO 1e-13
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 1e-08
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 4e-08
2hdc_A97 Protein (transcription factor); structure, dyanami 1e-07
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 1e-07
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 1e-07
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 1e-07
2c6y_A111 Forkhead box protein K2; transcription regulation, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 44/56 (78%), Positives = 49/56 (87%), Gaps = 2/56 (3%)

Query: 102 QNSIRHNLSLHSKFMRVQNEGTGKSSWWMLNPD-AKAGKSARRRATSMET-SKFEK 155
           +NSIRHNLSLHSKF+RVQNEGTGKSSWWMLNP+  K+GKS RRRA SM+  SKF K
Sbjct: 61  KNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPRRRAASMDNNSKFAK 116
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 99.98
3bpy_A85 FORK head domain, forkhead transcription factor FO 99.97
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 99.97
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 99.96
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 99.95
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=2.2e-35  Score=244.35  Aligned_cols=93  Identities=28%  Similarity=0.462  Sum_probs=82.1

Q ss_pred             CCCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--
Q psy12666         49 FENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--  121 (347)
Q Consensus        49 ~~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--  121 (347)
                      +.||||||++||++||+++|+        ++|||+|||+|     |||+.   +..|||||||||||||+||+||++.  
T Consensus         1 h~KPp~SY~~LI~~AI~~sp~--------~~LtL~eIY~~I~~~fpyyr~---~~~gWqNSIRHNLSln~~F~kv~r~~~   69 (102)
T 1vtn_C            1 HAKPPYSYISLITMAIQQAPG--------KMLTLSEIYQWIMDLFPYYRE---NQQRWQNSIRHSLSFNDCFVKVARSPD   69 (102)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTT--------SCBCHHHHHHHHHHHCGGGGS---CHHHHHHHHHHHHHHCTTEEEECCCSC
T ss_pred             CcCcCCCHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHcCCcccc---CCCchhhhhhhhhhhccceEecCCCCC
Confidence            479999999999999999999        99999999999     99998   7899999999999999999999985  


Q ss_pred             CCCccceeEeCCCccccchhhhhcccccchhhhhhhhhhh
Q psy12666        122 GTGKSSWWMLNPDAKAGKSARRRATSMETSKFEKRRGRVK  161 (347)
Q Consensus       122 ~~GKG~~W~l~p~~~~gk~~RRR~~s~~~~k~~Krr~R~k  161 (347)
                      +.|||+||+|+++++.         +++++.++|||+|++
T Consensus        70 ~~GKG~~W~l~p~~~~---------~f~~g~~~rr~~~~~  100 (102)
T 1vtn_C           70 KPGKGSYWALHPSSGN---------MFENGCYLRRQKRFK  100 (102)
T ss_dssp             SSCSSCEEEECGGGCS---------TTCSSCSSSCSSCCC
T ss_pred             CCCCcceEEECcCHHH---------HhhcCCeeccccccc
Confidence            6799999999999864         556666666665543
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 3e-08
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 4e-08
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 4e-08
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 7e-08
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 3e-07
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 7e-07
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 101 YQNSIRHNLSLHSKFMRVQNE--GTGKSSWWMLNPDA----KAGKSARRR 144
           +QNSIRHNLSL+  F+++  E    GK ++W L+P +      G   RRR
Sbjct: 46  WQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRR 95
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 99.97
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 99.97
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 99.97
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 99.96
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 99.95
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 99.95
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-34  Score=231.18  Aligned_cols=76  Identities=30%  Similarity=0.590  Sum_probs=72.0

Q ss_pred             CCCcchHHHHHHHHHHhCCCCCCCCCCCCcccccccCCc-----cccccccCCCCchhhhhhhhhcccccccccccc--C
Q psy12666         50 ENDNFFVNKLIVKCQIVNPYLDSSKAFDKPCHMHELWPG-----PLLEIKFRPANHYQNSIRHNLSLHSKFMRVQNE--G  122 (347)
Q Consensus        50 ~KPpySYa~LI~~AI~ssP~~~~~~~~~k~LTL~EIY~~-----PYfk~k~~~~~GWKNSIRHNLSLn~~F~Kv~r~--~  122 (347)
                      .||||||++||++||+++|+        ++|||+|||+|     |||+.   +..|||||||||||+|+||+||++.  +
T Consensus         2 ~KP~~sY~~LI~~Ai~~sp~--------~~ltL~eIy~~i~~~fpyfr~---~~~gWkNSIRHnLS~n~~F~kv~r~~~~   70 (98)
T d2c6ya1           2 SKPPYSYAQLIVQAITMAPD--------KQLTLNGIYTHITKNYPYYRT---ADKGWQNSIRHNLSLNRYFIKVPRSQEE   70 (98)
T ss_dssp             CCCSSCHHHHHHHHHHTSTT--------SCEEHHHHHHHHHHHCTTSCT---TCHHHHHHHHHHHHHSTTEEEECCCTTS
T ss_pred             CCCCccHHHHHHHHHHhCCC--------CCccHHHHHHHHHHhCccccc---CCCCcchhhchhcccccceEeccCCCCC
Confidence            69999999999999999999        99999999999     99998   7889999999999999999999885  6


Q ss_pred             CCccceeEeCCCcc
Q psy12666        123 TGKSSWWMLNPDAK  136 (347)
Q Consensus       123 ~GKG~~W~l~p~~~  136 (347)
                      .|||+||+|+|++.
T Consensus        71 ~gKg~~W~l~p~~~   84 (98)
T d2c6ya1          71 PGKGSFWRIDPASE   84 (98)
T ss_dssp             CCSSCEEEECHHHH
T ss_pred             CCCCceEEECccHH
Confidence            79999999999875
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure