Psyllid ID: psy12687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MLLNEVKDEYMSSIKKAVVDFaihdprepqlsimekeqvpslnpmlemgsefkDTFDqnkkkldnslfTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWmylepifsspdiqaqmpeegrrfsamdkltcvht
Flexible Loop (DISEMBL)
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRrfsamdkltcvht
Low Complexity Region (SEG)
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Disordered region (IsUnstruct)
***************KAVVDFAI****************************************DNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFS**************************
Disordered Region (DISOPRED)
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Disordered Region (DISEMBL)
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Disordered Region (DISPRO)
*LLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q8WXX0	4024	Dynein heavy chain 7, axo	yes	N/A	0.370	0.013	0.745	6e-20
Q63170	4057	Dynein heavy chain 7, axo	yes	N/A	0.384	0.013	0.745	6e-20
Q923J6	3092	Dynein heavy chain 12, ax	no	N/A	0.391	0.018	0.596	5e-14
Q6ZR08	3092	Dynein heavy chain 12, ax	no	N/A	0.356	0.016	0.615	5e-14
Q3V0Q1	3086	Dynein heavy chain 12, ax	no	N/A	0.391	0.018	0.596	6e-14
Q8TD57	4116	Dynein heavy chain 3, axo	no	N/A	0.328	0.011	0.627	7e-14
Q8BW94	4083	Dynein heavy chain 3, axo	no	N/A	0.328	0.011	0.627	1e-13
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.391	0.012	0.464	3e-11
Q63164	4516	Dynein heavy chain 1, axo	no	N/A	0.881	0.027	0.333	4e-11
Q96JB1	4490	Dynein heavy chain 8, axo	no	N/A	0.524	0.016	0.407	2e-10

>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 50/55 (90%)

Query: 83   KNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
            K  ++WE KL+LLQEI+DEW+KVQ TW+YLEPIFSSPDI +QMPEEGRRF+A+DK
Sbjct: 961  KQMREWEGKLLLLQEILDEWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDK 1015

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.
Homo sapiens (taxid: 9606)

>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 50/55 (90%)

Query: 83   KNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
            K  ++WE KL+LLQEI+DEW+KVQ TW+YLEPIFSSPDI +QMPEEGRRF+A+DK
Sbjct: 994  KQMREWEGKLLLLQEILDEWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDK 1048

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Rattus norvegicus (taxid: 10116)

>sp|Q923J6|DYH12_RAT Dynein heavy chain 12, axonemal OS=Rattus norvegicus GN=Dnah12 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 82  FKN-FKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           F+N  K WE++L+ +QE IDEW+KVQ  W+YLEPIF S DI  QMPEEGR+F  +D+
Sbjct: 882 FENEIKAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDR 938

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q6ZR08|DYH12_HUMAN Dynein heavy chain 12, axonemal OS=Homo sapiens GN=DNAH12 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query: 86  KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           K WE++L+ +QE IDEW+KVQ  W+YLEPIF S DI  QMPEEGR+F  +D+
Sbjct: 889 KAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDR 940

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 82  FKN-FKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           F+N  K WE++L+ +QE IDEW+KVQ  W+YLEPIF S DI  QMPEEGR+F  +D+
Sbjct: 882 FENEIKAWEDRLIRIQETIDEWLKVQAQWLYLEPIFCSEDIMQQMPEEGRQFQTVDR 938

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query: 86   KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
            + WEEKL+ +Q+ +D W+K Q TW+YLEPIFSS DI AQMPEEGR+F  +D
Sbjct: 1067 RKWEEKLIRIQDNLDAWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVD 1117

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q8BW94|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query: 86   KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
            + WEEKL+ +QE +D W+K Q TW+YLEPIFSS DI AQMPEEG++F+ +D
Sbjct: 1034 RKWEEKLVRVQENLDAWLKCQVTWLYLEPIFSSEDIIAQMPEEGKKFTTVD 1084

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 83   KNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
            +    WE KL L QE+++EW+  Q++W+YLEPIFSS DI  Q+P E +R+  M+++
Sbjct: 1218 QRINSWENKLKLTQEVLEEWLNCQRSWLYLEPIFSSEDINQQLPVESKRYQTMERI 1273

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 12/138 (8%)

Query: 9    EYMSSIKK----AVVDFAIHDPREPQLSIMEKEQVPSLN---PMLEMGSEFKDTFDQNKK 61
            +Y+ SI K    A  ++AI    E  L  MEKE    L    P  E  +    + D+  +
Sbjct: 1346 DYIESISKVAEVAGKEYAI----EQALDKMEKEWASILFNVLPYKETDTYILKSPDEASQ 1401

Query: 62   KLDNSLFTIHPV-LSEMSNIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPD 120
             LD+ +     +  S     + +    WE KL L QE+++EW+  Q++W+YLEPIFSS D
Sbjct: 1402 LLDDHIVMTQSMSFSPYKKPFEQRINSWETKLKLTQEVLEEWLNCQRSWLYLEPIFSSED 1461

Query: 121  IQAQMPEEGRRFSAMDKL 138
            I  Q+P E +R+  M+++
Sbjct: 1462 ITRQLPVESKRYQTMERI 1479

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 63   LDNSLFTIHPVLSEMSNIWFK-NFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDI 121
            +++SL  +  +LS   N  FK N ++W  KL    +II+EW+ VQ  W+YLE +F   DI
Sbjct: 1451 MEDSLMVLGSLLSNRYNAPFKKNIQNWVYKLSTSSDIIEEWLVVQNLWVYLEAVFVGGDI 1510

Query: 122  QAQMPEEGRRFSAMDK 137
              Q+P+E +RF  +DK
Sbjct: 1511 AKQLPQEAKRFQNIDK 1526

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
312385987	3641	hypothetical protein AND_00079 [Anophele	0.678	0.026	0.520	8e-20
189523512	3990	PREDICTED: dynein heavy chain 7, axonema	0.678	0.024	0.510	2e-19
301616637	3961	PREDICTED: LOW QUALITY PROTEIN: dynein h	0.678	0.024	0.520	2e-19
395846885	4000	PREDICTED: dynein heavy chain 7, axonema	0.671	0.024	0.494	6e-19
195067028	2032	GH22425 [Drosophila grimshawi] gi|193896	0.356	0.025	0.843	6e-19
158298410	3885	AGAP009568-PA [Anopheles gambiae str. PE	0.664	0.024	0.520	7e-19
157130032	3962	dynein heavy chain [Aedes aegypti] gi|10	0.643	0.023	0.505	7e-19
195159838	4105	GL14511 [Drosophila persimilis] gi|19411	0.293	0.010	0.843	7e-19
195035583	4046	GH11625 [Drosophila grimshawi] gi|193905	0.293	0.010	0.843	7e-19
198475507	3995	GA25143 [Drosophila pseudoobscura pseudo	0.293	0.010	0.843	7e-19

>gi|312385987|gb|EFR30365.1| hypothetical protein AND_00079 [Anopheles darlingi]

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 42   LNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWF-KNFKDWEEKLMLLQEIID 100
            + P  + G+     FD  +  LD+ +     + S +    F K+   WE+KLMLLQ+I+D
Sbjct: 1155 VKPYRDTGTYILAAFDDIQVLLDDHIIKTQTMKSSLYIKPFEKDIIAWEKKLMLLQDILD 1214

Query: 101  EWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
            +W+KVQ TWMYLEPIFSSPDIQ+QMPEEGRRFSA+DK+
Sbjct: 1215 DWLKVQATWMYLEPIFSSPDIQSQMPEEGRRFSAVDKI 1252

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189523512|ref|XP_690143.3| PREDICTED: dynein heavy chain 7, axonemal [Danio rerio]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 41  SLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKLMLLQEII 99
           +L P  E G+    + D+ +  LD+ +     +  S     +    +DWE+KL+LLQEI+
Sbjct: 885 TLLPYRETGTSILSSLDEVQMLLDDHIVKTQTMRGSPFIKPFEAEIRDWEDKLLLLQEIM 944

Query: 100 DEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           DEW+KVQ TW+YLEPIFSSPDI AQMPEEGRRF+A+DK
Sbjct: 945 DEWLKVQGTWLYLEPIFSSPDIMAQMPEEGRRFTAVDK 982

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301616637|ref|XP_002937766.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 7, axonemal-like [Xenopus (Silurana) tropicalis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 41  SLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKN-FKDWEEKLMLLQEII 99
            L+P  E G+    + D  +  LD+ L     +        F+N  ++WE KL+LLQEI+
Sbjct: 847 GLHPYRETGTYILSSVDDIQMLLDDHLVKTQTMRGSPFIKAFENEIREWESKLLLLQEIL 906

Query: 100 DEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           DEW+KVQ TW+YLEPIFSSPDI AQMPEEGRRFS +DK
Sbjct: 907 DEWLKVQATWLYLEPIFSSPDIMAQMPEEGRRFSTVDK 944

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395846885|ref|XP_003796120.1| PREDICTED: dynein heavy chain 7, axonemal [Otolemur garnettii]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 42  LNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKLMLLQEIID 100
           ++P  E G+    + D+ +  LD+ +     +  S     + K  ++WE KL+LLQEI+D
Sbjct: 895 IHPYRETGTSILSSVDEIQMLLDDHIIKTQTMRGSPFIKPYEKQMREWEGKLLLLQEILD 954

Query: 101 EWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
           EW+KVQ TW+YLEPIFSSPDI +QMPEEGRRF+A+DK
Sbjct: 955 EWLKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDK 991

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195067028|ref|XP_001996864.1| GH22425 [Drosophila grimshawi] gi|193896638|gb|EDV95504.1| GH22425 [Drosophila grimshawi]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 48/51 (94%)

Query: 88  WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
           WE KLMLLQEI+DEW++VQ TWMYLEPIFSSPDIQ QMPEEGRRFSA+DK+
Sbjct: 17  WEAKLMLLQEILDEWLRVQATWMYLEPIFSSPDIQQQMPEEGRRFSAVDKI 67

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298410|ref|XP_318579.4| AGAP009568-PA [Anopheles gambiae str. PEST] gi|157013867|gb|EAA14424.4| AGAP009568-PA [Anopheles gambiae str. PEST]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 44  PMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWF-KNFKDWEEKLMLLQEIIDEW 102
           P  + G+      D  +  LD+ +     + S +    F K+   WE+KLMLLQ+I+D+W
Sbjct: 778 PYRDTGTYILAAIDDIQVLLDDHIIKTQTMKSSLYIKPFEKDIIAWEKKLMLLQDILDDW 837

Query: 103 VKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
           +KVQ TWMYLEPIFSSPDIQ+QMPEEGRRFSA+DK+
Sbjct: 838 LKVQATWMYLEPIFSSPDIQSQMPEEGRRFSAVDKI 873

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130032|ref|XP_001655526.1| dynein heavy chain [Aedes aegypti] gi|108884409|gb|EAT48634.1| AAEL000307-PA, partial [Aedes aegypti]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 7/99 (7%)

Query: 44  PMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKD----WEEKLMLLQEII 99
           P  + G+      D  +  LD+ +     +    S+++ K F+     WE+KLMLLQ+I+
Sbjct: 846 PYRDTGTYILSAIDDIQVLLDDHIIKTQTM---KSSLYIKPFEADILAWEKKLMLLQDIL 902

Query: 100 DEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
           D+W+KVQ TWMYLEPIFSSPDIQ+QMPEEGRRFSA+DK+
Sbjct: 903 DDWLKVQATWMYLEPIFSSPDIQSQMPEEGRRFSAVDKI 941

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159838|ref|XP_002020783.1| GL14511 [Drosophila persimilis] gi|194117733|gb|EDW39776.1| GL14511 [Drosophila persimilis]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 48/51 (94%)

Query: 88   WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
            WE KLMLLQEI+DEW++VQ TWMYLEPIFSSPDIQ QMPEEGRRFSA+DK+
Sbjct: 1036 WEAKLMLLQEILDEWLRVQSTWMYLEPIFSSPDIQQQMPEEGRRFSAVDKI 1086

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035583|ref|XP_001989257.1| GH11625 [Drosophila grimshawi] gi|193905257|gb|EDW04124.1| GH11625 [Drosophila grimshawi]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 48/51 (94%)

Query: 88  WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
           WE KLMLLQEI+DEW++VQ TWMYLEPIFSSPDIQ QMPEEGRRFSA+DK+
Sbjct: 935 WEAKLMLLQEILDEWLRVQATWMYLEPIFSSPDIQQQMPEEGRRFSAVDKI 985

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475507|ref|XP_002132937.1| GA25143 [Drosophila pseudoobscura pseudoobscura] gi|198138853|gb|EDY70339.1| GA25143 [Drosophila pseudoobscura pseudoobscura]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 48/51 (94%)

Query: 88  WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
           WE KLMLLQEI+DEW++VQ TWMYLEPIFSSPDIQ QMPEEGRRFSA+DK+
Sbjct: 935 WEAKLMLLQEILDEWLRVQSTWMYLEPIFSSPDIQQQMPEEGRRFSAVDKI 985

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|F1MRU4	4079	DNAH3 "Uncharacterized protein	0.356	0.012	0.666	8.2e-21
UNIPROTKB|F1NNT1	3863	DNAH3 "Uncharacterized protein	0.342	0.012	0.693	1.2e-20
UNIPROTKB|F1NZ92	4073	DNAH3 "Uncharacterized protein	0.342	0.012	0.693	1.3e-20
UNIPROTKB|Q8TD57	4116	DNAH3 "Dynein heavy chain 3, a	0.356	0.012	0.627	1.4e-20
UNIPROTKB|J9NT00	4071	DNAH3 "Uncharacterized protein	0.356	0.012	0.647	1.7e-20
UNIPROTKB|F1PBB5	4075	DNAH3 "Uncharacterized protein	0.356	0.012	0.647	1.7e-20
UNIPROTKB|J9NWH9	4081	DNAH3 "Uncharacterized protein	0.356	0.012	0.647	1.7e-20
MGI|MGI:2683040	4083	Dnahc3 "dynein, axonemal, heav	0.356	0.012	0.627	1.2e-19
ZFIN|ZDB-GENE-070912-282	4001	dnah7 "dynein, axonemal, heavy	0.678	0.024	0.510	1.3e-19
UNIPROTKB|J9P9Z9	4023	DNAH7 "Uncharacterized protein	0.657	0.023	0.505	2.2e-19

UNIPROTKB|F1MRU4 DNAH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +QEI+D W+K Q TW+YLEPIFSS DI AQMPEEGR+F+ +D
Sbjct:  1028 RKWEEKLVRVQEILDAWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFAIVD 1078

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|F1NNT1 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 34/49 (69%), Positives = 39/49 (79%)

Query:    88 WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             WE KL L+Q IID W+K Q TW+YLEPIFSS DI AQMPEEGR+F  +D
Sbjct:   814 WEAKLTLMQSIIDSWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVD 862

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NZ92 DNAH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 34/49 (69%), Positives = 39/49 (79%)

Query:    88 WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             WE KL L+Q IID W+K Q TW+YLEPIFSS DI AQMPEEGR+F  +D
Sbjct:  1027 WEAKLTLMQSIIDSWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVD 1075

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +Q+ +D W+K Q TW+YLEPIFSS DI AQMPEEGR+F  +D
Sbjct:  1067 RKWEEKLIRIQDNLDAWLKCQATWLYLEPIFSSEDIIAQMPEEGRKFGIVD 1117

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=NAS

GO:0005858 "axonemal dynein complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

UNIPROTKB|J9NT00 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +QEI+D W+K Q TW+YLEPIFSS DI AQM EEGR+F+ +D
Sbjct:  1023 RKWEEKLVRVQEILDAWLKCQATWLYLEPIFSSEDIIAQMAEEGRKFATVD 1073

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|F1PBB5 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +QEI+D W+K Q TW+YLEPIFSS DI AQM EEGR+F+ +D
Sbjct:  1027 RKWEEKLVRVQEILDAWLKCQATWLYLEPIFSSEDIIAQMAEEGRKFATVD 1077

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|J9NWH9 DNAH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +QEI+D W+K Q TW+YLEPIFSS DI AQM EEGR+F+ +D
Sbjct:  1033 RKWEEKLVRVQEILDAWLKCQATWLYLEPIFSSEDIIAQMAEEGRKFATVD 1083

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

MGI|MGI:2683040 Dnahc3 "dynein, axonemal, heavy chain 3" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query:    86 KDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
             + WEEKL+ +QE +D W+K Q TW+YLEPIFSS DI AQMPEEG++F+ +D
Sbjct:  1034 RKWEEKLVRVQENLDAWLKCQVTWLYLEPIFSSEDIIAQMPEEGKKFTTVD 1084

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

ZFIN|ZDB-GENE-070912-282 dnah7 "dynein, axonemal, heavy chain 7" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 50/98 (51%), Positives = 67/98 (68%)

Query:    41 SLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKLMLLQEII 99
             +L P  E G+    + D+ +  LD+ +     +  S     +    +DWE+KL+LLQEI+
Sbjct:   896 TLLPYRETGTSILSSLDEVQMLLDDHIVKTQTMRGSPFIKPFEAEIRDWEDKLLLLQEIM 955

Query:   100 DEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
             DEW+KVQ TW+YLEPIFSSPDI AQMPEEGRRF+A+DK
Sbjct:   956 DEWLKVQGTWLYLEPIFSSPDIMAQMPEEGRRFTAVDK 993

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P9Z9 DNAH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 48/95 (50%), Positives = 65/95 (68%)

Query:    44 PMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKLMLLQEIIDEW 102
             P  E G+    + D+ +  LD+ +     +  S     + K  ++WE KL+LLQEI+DEW
Sbjct:   920 PYRESGTFILSSVDEIQMLLDDHIIKTQTMRGSPFIKPYEKQIREWESKLLLLQEILDEW 979

Query:   103 VKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDK 137
             +KVQ TW+YLEPIFSSPDI +QMPEEGRRF+A+DK
Sbjct:   980 LKVQATWLYLEPIFSSPDIMSQMPEEGRRFTAVDK 1014

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam08393	408	pfam08393, DHC_N2, Dynein heavy chain, N-terminal	3e-20

>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 33/61 (54%), Positives = 48/61 (78%), Gaps = 4/61 (6%)

Query: 81  WFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMD 136
           + K F++    WE+KL L+QE+++ W+KVQ+ W+YLEPIFSS DI+ Q+PEE +RFS +D
Sbjct: 198 YVKPFEEEADEWEKKLNLIQEVLELWLKVQRKWVYLEPIFSSSDIKKQLPEESKRFSNVD 257

Query: 137 K 137
           K
Sbjct: 258 K 258

Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region. Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF08393	408	DHC_N2: Dynein heavy chain, N-terminal region 2; I	99.92

>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules

Probab=99.92  E-value=3.2e-26  Score=182.45  Aligned_cols=135  Identities=32%  Similarity=0.557  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCc---chhhhhhhhcccCcccccccccchhhhhHHHHHHHhhhhhHHHhhhH-HHhHHH
Q psy12687          5 EVKDEYMSSIKKAVVDFAIHDPR---EPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNI   80 (143)
Q Consensus         5 ei~~dy~~~~kkaivd~vL~d~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~l~~~~-s~~~~~   80 (143)
                      +-.+.+..+..+|..|+.+++.+   ...|..+.+...++.    +.+.+..++++++.+.|++++.++++|. |+|+++
T Consensus       126 ~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~f~~~~~~----~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~~~  201 (408)
T PF08393_consen  126 DHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNMEFEFVPYK----DKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFVKP  201 (408)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B-EEEEET----TT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTC
T ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhceeeeeccc----cchhheecchHHHHHHHHHHHHHHhcccccchhHH
Confidence            44677888999999999998876   466777666544333    2456778889999999999999999997 799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccCchhHhHHhHHHHhHHHHhhhhhhhcC
Q psy12687         81 WFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKLTCVHT  143 (143)
Q Consensus        81 f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~~~~i~~~lp~e~~~F~~v~~~~~~~~  143 (143)
                      |..++..|+++|+.++++|+.|++||++|+||+|||+++||+++||.|+++|..|++.|+.++
T Consensus       202 ~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F~~i~~~~~~i~  264 (408)
T PF08393_consen  202 FRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKFSSIDKEWRSIM  264 (408)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcChHHHHHH
Confidence            999999999999999999999999999999999999988999999999999999999999763

Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		2e-06
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		3e-06

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 81  WFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRRFSAM 135
           ++K F++    W+++L  ++ ++D W+ VQ+ W+YLE IFS S DI   +P E  RF ++
Sbjct: 217 YYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
Query: 136 D 136
           +
Sbjct: 277 N 277

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 81  WFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRRFSAM 135
           ++K F++    W+++L  ++ ++D W+ VQ+ W+YLE IFS S DI   +P E  RF ++
Sbjct: 217 YYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
Query: 136 D 136
           +
Sbjct: 277 N 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-22
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-21

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 90.7 bits (225), Expect = 3e-22
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 77  MSNIWFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRR 131
             + ++K F++    W+++L  ++ ++D W+ VQ+ W+YLE IFS S DI   +P E  R
Sbjct: 213 KMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTR 272

Query: 132 FSAMDK 137
           F +++ 
Sbjct: 273 FKSINS 278

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 88.7 bits (220), Expect = 1e-21
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 77  MSNIWFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIF-SSPDIQAQMPEEGRR 131
            ++ ++K F+      E KL  L EI   WV+VQ  W+ L  I   + DIQ  +P E  +
Sbjct: 272 KASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSK 331

Query: 132 FSAMDK 137
           F ++  
Sbjct: 332 FKSLTS 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.92
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.89

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.92  E-value=1.3e-25  Score=207.56  Aligned_cols=136  Identities=24%  Similarity=0.419  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCc---chhhhhhhhcccCcccccccccchhhhhHHHHHHHhhhhhHHHhhhH-HHhH
Q psy12687          3 LNEVKDEYMSSIKKAVVDFAIHDPR---EPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMS   78 (143)
Q Consensus         3 ~~ei~~dy~~~~kkaivd~vL~d~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~l~~~~-s~~~   78 (143)
                      +.+..+.+..+..+|..|+.|++.+   ...|...++...+|..     ..+.+++.+++++.|+||+.++++|. |+|+
T Consensus       144 l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~~~-----~~~ll~~~dei~~~led~~~~l~sm~~S~~~  218 (3245)
T 3vkg_A          144 LARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQR-----KCKLVRGWDDLFNKLAEHLNSISAMKMSPYY  218 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCEEEEETT-----TEEEEECHHHHHHHHHHHHHHHHHTTSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEeccC-----CeeEeCCHHHHHHHHHHHHHHHHHHhcCCch
Confidence            3466788899999999999998877   5668877766544432     24467788999999999999999997 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccC-chhHhHHhHHHHhHHHHhhhhhhhcC
Q psy12687         79 NIWFKNFKDWEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRRFSAMDKLTCVHT  143 (143)
Q Consensus        79 ~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~~L~~if~-~~~i~~~lp~e~~~F~~v~~~~~~~~  143 (143)
                      ++|++++..|+++|+.++++|+.|++||++|+||+|||+ |+||++|||.|+++|+.||++|+.|+
T Consensus       219 ~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im  284 (3245)
T 3vkg_A          219 KVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAIL  284 (3245)
T ss_dssp             TGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997 79999999999999999999999864

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.89  E-value=1.8e-24  Score=198.90  Aligned_cols=122  Identities=24%  Similarity=0.297  Sum_probs=100.2

Q ss_pred             HHHHhhhcCCc---chhhhhhhhcccCcccccccccchhhhhHHHHHHHhhhhhHHHhhhH-HHhHHHHHHHHHHHHHHH
Q psy12687         17 AVVDFAIHDPR---EPQLSIMEKEQVPSLNPMLEMGSEFKDTFDQNKKKLDNSLFTIHPVL-SEMSNIWFKNFKDWEEKL   92 (143)
Q Consensus        17 aivd~vL~d~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~l~~~~-s~~~~~f~~~v~~w~~~L   92 (143)
                      |..|+.|++.+   +..|..+++...+|.     .+.+.+++.+++++.|+||+..+++|. |+|+++|++++..|+++|
T Consensus       217 AskE~~iE~~L~~i~~~W~~~~f~~~~~~-----~~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L  291 (2695)
T 4akg_A          217 KSDEFVIEKSLNRIKKFWKEAQYEVIEHS-----SGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKL  291 (2695)
T ss_dssp             ----CHHHHHHHHHHHHHTSCCCEEEECS-----SSCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHhhceEEEEEEec-----CCeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            33445554433   344555544433332     245677889999999999999999997 799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhccc-CchhHhHHhHHHHhHHHHhhhhhhhcC
Q psy12687         93 MLLQEIIDEWVKVQQTWMYLEPIF-SSPDIQAQMPEEGRRFSAMDKLTCVHT  143 (143)
Q Consensus        93 ~~~~~~l~~w~~~Q~~W~~L~~if-~~~~i~~~lp~e~~~F~~v~~~~~~~~  143 (143)
                      +.++++|+.|++||++|+||+||| +|+||++|||.|+++|+.||+.|+.|+
T Consensus       292 ~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im  343 (2695)
T 4akg_A          292 TKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMIT  343 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 699999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00