Psyllid ID: psy12694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSSPSPIASHRTEKSLYSSSYIPSDMEDDVPYLG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHcccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mrggrnkfgpmykrDRARKLQMMRQRQIAVQTLqraspymigdgvtlsynpastspygnlyikqeiqipqvssltsspdsspspiashrtekslysssyipsdmeddvpylg
Flexible Loop (DISEMBL)
mrggrnkfgpmykrdrARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSspspiashrtekslysssyipsdmeddvpylg
Low Complexity Region (SEG)
MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIpqvssltsspdsspspiasHRTEKSLYSSSYIPSDMEDDVPYLG
Disordered region (IsUnstruct)
***************************IAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQ*********************************************
Disordered Region (DISOPRED)
****RNKFGPMYKRDRA************************************************************************T**********************
Disordered Region (DISEMBL)
MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIP***********************SLYSSSYIPSDMEDDVPYLG
Disordered Region (DISPRO)
******KFGPMYKRDRARKLQMMRQRQIAVQTLQRAS****GDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSSPSPIASHRTEKSLYSSSYIPSDMEDDVPYLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSSPSPIASHRTEKSLYSSSYIPSDMEDDVPYLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P33244	1027	Nuclear hormone receptor	yes	N/A	0.741	0.080	0.674	8e-24
P49867	534	Nuclear hormone receptor	N/A	N/A	0.678	0.142	0.705	9e-20
Q9GKL2	461	Steroidogenic factor 1 OS	yes	N/A	0.223	0.054	0.8	0.0001
Q95L87	463	Steroidogenic factor 1 OS	N/A	N/A	0.428	0.103	0.446	0.0001
P79387	461	Steroidogenic factor 1 OS	yes	N/A	0.223	0.054	0.8	0.0001
O42101	501	Nuclear receptor subfamil	no	N/A	0.187	0.041	0.904	0.0001
Q04752	461	Steroidogenic factor 1 OS	yes	N/A	0.223	0.054	0.8	0.0001
O00482	541	Nuclear receptor subfamil	no	N/A	0.187	0.038	0.904	0.0001
Q9QWM1	560	Nuclear receptor subfamil	yes	N/A	0.491	0.098	0.431	0.0002
P45448	560	Nuclear receptor subfamil	no	N/A	0.491	0.098	0.431	0.0002

>sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 OS=Drosophila melanogaster GN=ftz-f1 PE=1 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct: 583 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 639

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 640 NIKQEIQIPQVSSLTQSPDSSPSPIA 665

Acts as a cofactor to fushi tarazu (ftz). Facilitates the binding of ftz to DNA. Binds the sequence element 5'-YCYYGGYCR-3' in the zebra element of ftz. Probably also functions as a receptor for a yet unknown ligand.
Drosophila melanogaster (taxid: 7227)

>sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 OS=Bombyx mori GN=FTZ-F1 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 9/85 (10%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGD-GVTLSYNPASTSPYGN 59
           MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTL+ +    +GD G+ L +     SPY  
Sbjct: 164 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLRGS----LGDGGLVLGFG----SPYTA 215

Query: 60  LYIKQEIQIPQVSSLTSSPDSSPSP 84
           + +KQEIQIPQVSSLTSSP+SSP P
Sbjct: 216 VSVKQEIQIPQVSSLTSSPESSPGP 240

May play an important role in development.

Bombyx mori (taxid: 7091)

>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 OS=Equus caballus GN=NR5A1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQ 25
           MRGGRNKFGPMYKRDRA K Q   Q
Sbjct: 88  MRGGRNKFGPMYKRDRALKQQKKAQ 112

Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO-NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional avtivity. Binds phospholipids with a phosphatidylinositol (PI) headgroup, in particular PI(3,4)P2 and PI(3,4,5)P3. Activated by the phosphorylation of NR5A1 by HIPK3 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation.

Equus caballus (taxid: 9796)

>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 OS=Macropus eugenii GN=NR5A1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSP 56
           MRGGRNKFGPMYKRDRA K Q         + L RA+ + +  G ++   P +  P
Sbjct: 88  MRGGRNKFGPMYKRDRALKQQK--------KALIRANGFKLETGPSMGPPPQTDYP 135

Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO-NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional avtivity. Binds phosphatidylcholine and phospholipids with a phosphatidylinositol (PI) headgroup, in particular PI(3,4)P2 and PI(3,4,5)P3. Activated by the phosphorylation of NR5A1 by HIPK3 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation.

Macropus eugenii (taxid: 9315)

>sp|P79387|STF1_PIG Steroidogenic factor 1 OS=Sus scrofa GN=NR5A1 PE=2 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQ 25
           MRGGRNKFGPMYKRDRA K Q   Q
Sbjct: 88  MRGGRNKFGPMYKRDRALKQQKKAQ 112

Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO-NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional avtivity. Binds phosphatidylcholine and phospholipids with a phosphatidylinositol (PI) headgroup, in particular PI(3,4)P2 and PI(3,4,5)P3. Activated by the phosphorylation of NR5A1 by HIPK3 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation.

Sus scrofa (taxid: 9823)

>sp|O42101|NR5A2_CHICK Nuclear receptor subfamily 5 group A member 2 OS=Gallus gallus GN=NR5A2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%)

Query: 1   MRGGRNKFGPMYKRDRARKLQ 21
           MRGGRNKFGPMYKRDRA K Q
Sbjct: 121 MRGGRNKFGPMYKRDRALKQQ 141

Transcription regulator.

Gallus gallus (taxid: 9031)

>sp|Q04752|STF1_BOVIN Steroidogenic factor 1 OS=Bos taurus GN=NR5A1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQ 25
           MRGGRNKFGPMYKRDRA K Q   Q
Sbjct: 88  MRGGRNKFGPMYKRDRALKQQKKAQ 112

Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO-NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional avtivity. Binds phospholipids with a phosphatidylinositol (PI) headgroup, in particular PI(3,4)P2 and PI(3,4,5)P3. Activated by the phosphorylation of NR5A1 by HIPK3 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation.

Bos taurus (taxid: 9913)

>sp|O00482|NR5A2_HUMAN Nuclear receptor subfamily 5 group A member 2 OS=Homo sapiens GN=NR5A2 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%)

Query: 1   MRGGRNKFGPMYKRDRARKLQ 21
           MRGGRNKFGPMYKRDRA K Q
Sbjct: 161 MRGGRNKFGPMYKRDRALKQQ 181

Binds to the sequence element 5'-AACGACCGACCTTGAG-3' of the enhancer II of hepatitis B virus genes, a critical cis-element of their expression and regulation. May be responsible for the liver-specific activity of enhancer II, probably in combination with other hepatocyte transcription factors. Key regulator of cholesterol 7-alpha-hydroxylase gene (CYP7A) expression in liver. May also contribute to the regulation of pancreas-specific genes and play important roles in embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q9QWM1|NR5A2_RAT Nuclear receptor subfamily 5 group A member 2 OS=Rattus norvegicus GN=Nr5a2 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1   MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTS 55
           MRGGRNKFGPMYKRDRA K Q   ++R   + ++ + +    M  D  +   N  S S
Sbjct: 182 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTSAIQNIHSAS 239

Binds to promoters containing the sequence element 5'-AACGACCGACCTTGAG-3'. Plays a role in the regulation of gene expression in liver and pancreas. May play a role in embryonic development.

Rattus norvegicus (taxid: 10116)

>sp|P45448|NR5A2_MOUSE Nuclear receptor subfamily 5 group A member 2 OS=Mus musculus GN=Nr5a2 PE=1 SV=3

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1   MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTS 55
           MRGGRNKFGPMYKRDRA K Q   ++R   + ++ + +    M  D  +   N  S S
Sbjct: 182 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTSAIQNIHSAS 239

Binds to promoters containing the sequence element 5'-AACGACCGACCTTGAG-3'. Plays a role in the regulation of gene expression in liver and pancreas. May play a role in embryonic development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
195378520	1022	GJ13743 [Drosophila virilis] gi|19415518	0.732	0.080	0.666	1e-22
198465087	1057	GA17924 [Drosophila pseudoobscura pseudo	0.741	0.078	0.686	2e-22
195160888	950	GL25259 [Drosophila persimilis] gi|19411	0.741	0.087	0.686	2e-22
194326123	602	nuclear receptor [Blattella germanica]	0.616	0.114	0.743	2e-22
195440416	810	GK10750 [Drosophila willistoni] gi|19416	0.732	0.101	0.666	2e-22
195022948	965	GH17194 [Drosophila grimshawi] gi|193899	0.741	0.086	0.674	2e-22
194871251	1039	GG15724 [Drosophila erecta] gi|190654592	0.741	0.079	0.674	3e-22
157458	1043	FTZ-F1 [Drosophila melanogaster]	0.741	0.079	0.674	3e-22
194751787	1012	GF10806 [Drosophila ananassae] gi|190625	0.714	0.079	0.662	3e-22
195494509	1039	GE22055 [Drosophila yakuba] gi|194180969	0.741	0.079	0.674	3e-22

>gi|195378520|ref|XP_002048031.1| GJ13743 [Drosophila virilis] gi|194155189|gb|EDW70373.1| GJ13743 [Drosophila virilis]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 5/87 (5%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLS-YNPASTSPYGN 59
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +    IG  +  +  +P     Y N
Sbjct: 566 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSS----IGTDIKPTPLSPGYQQAYPN 621

Query: 60  LYIKQEIQIPQVSSLTSSPDSSPSPIA 86
           + IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 622 MNIKQEIQIPQVSSLTQSPDSSPSPIA 648

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198465087|ref|XP_001353488.2| GA17924 [Drosophila pseudoobscura pseudoobscura] gi|198150009|gb|EAL30999.2| GA17924 [Drosophila pseudoobscura pseudoobscura]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQIA+Q L+ +   M  D      +P     Y N+
Sbjct: 605 MRGGRNKFGPMYKRDRARKLQVMRQRQIALQALRNS---MGPDIKPTPISPGYQQAYPNM 661

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 662 NIKQEIQIPQVSSLTQSPDSSPSPIA 687

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195160888|ref|XP_002021304.1| GL25259 [Drosophila persimilis] gi|194118417|gb|EDW40460.1| GL25259 [Drosophila persimilis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQIA+Q L+ +   M  D      +P     Y N+
Sbjct: 498 MRGGRNKFGPMYKRDRARKLQVMRQRQIALQALRNS---MGPDIKPTPISPGYQQAYPNM 554

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 555 NIKQEIQIPQVSSLTQSPDSSPSPIA 580

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194326123|emb|CAQ57670.1| nuclear receptor [Blattella germanica]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 5/74 (6%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSY---NPASTSPY 57
           MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTL+ +  + +GD VTLSY     A TSP+
Sbjct: 179 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLRGS--HSLGDNVTLSYPQAGGAGTSPF 236

Query: 58  GNLYIKQEIQIPQV 71
            +L+IKQEIQIPQV
Sbjct: 237 ASLHIKQEIQIPQV 250

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440416|ref|XP_002068038.1| GK10750 [Drosophila willistoni] gi|194164123|gb|EDW79024.1| GK10750 [Drosophila willistoni]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 5/87 (5%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLS-YNPASTSPYGN 59
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +    +G  +  S  +P     Y N
Sbjct: 352 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSS----MGTDIKPSPLSPGYQQAYPN 407

Query: 60  LYIKQEIQIPQVSSLTSSPDSSPSPIA 86
           + IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 408 MNIKQEIQIPQVSSLTQSPDSSPSPIA 434

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195022948|ref|XP_001985668.1| GH17194 [Drosophila grimshawi] gi|193899150|gb|EDV98016.1| GH17194 [Drosophila grimshawi]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct: 527 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSS---MGTDIKPTPLSPGYQQAYPNM 583

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 584 NIKQEIQIPQVSSLTQSPDSSPSPIA 609

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194871251|ref|XP_001972809.1| GG15724 [Drosophila erecta] gi|190654592|gb|EDV51835.1| GG15724 [Drosophila erecta]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct: 595 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 651

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 652 NIKQEIQIPQVSSLTQSPDSSPSPIA 677

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157458|gb|AAA28542.1| FTZ-F1 [Drosophila melanogaster]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct: 585 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 641

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 642 NIKQEIQIPQVSSLTQSPDSSPSPIA 667

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751787|ref|XP_001958205.1| GF10806 [Drosophila ananassae] gi|190625487|gb|EDV41011.1| GF10806 [Drosophila ananassae]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 66/89 (74%), Gaps = 9/89 (10%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTS---PY 57
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +       G  +   P ST     Y
Sbjct: 563 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNSM------GPDIKPTPISTGYQQAY 616

Query: 58  GNLYIKQEIQIPQVSSLTSSPDSSPSPIA 86
            N+ IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 617 PNMNIKQEIQIPQVSSLTQSPDSSPSPIA 645

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494509|ref|XP_002094868.1| GE22055 [Drosophila yakuba] gi|194180969|gb|EDW94580.1| GE22055 [Drosophila yakuba]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1   MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
           MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct: 595 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 651

Query: 61  YIKQEIQIPQVSSLTSSPDSSPSPIA 86
            IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 652 NIKQEIQIPQVSSLTQSPDSSPSPIA 677

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0001078	1027	ftz-f1 "ftz transcription fact	0.580	0.063	0.602	3.3e-13
UNIPROTKB|F1LQ71	380	Nr5a1 "Steroidogenic factor 1"	0.223	0.065	0.8	2.2e-06
MGI|MGI:1346833	462	Nr5a1 "nuclear receptor subfam	0.223	0.054	0.8	3.9e-06
RGD|68350	462	Nr5a1 "nuclear receptor subfam	0.223	0.054	0.8	3.9e-06
ZFIN|ZDB-GENE-040702-6	502	nr5a1b "nuclear receptor subfa	0.5	0.111	0.392	1.3e-05
UNIPROTKB|Q5T6F6	178	NR5A1 "Steroidogenic factor 1"	0.223	0.140	0.8	1.3e-05
UNIPROTKB|H0Y328	377	NR5A2 "Nuclear receptor subfam	0.419	0.124	0.470	3.9e-05
ZFIN|ZDB-GENE-030131-4652	537	nr5a5 "nuclear receptor subfam	0.473	0.098	0.433	4e-05
UNIPROTKB|B4E2P3	469	NR5A2 "cDNA FLJ52395, highly s	0.419	0.100	0.470	5.4e-05
UNIPROTKB|O00482	541	NR5A2 "Nuclear receptor subfam	0.419	0.086	0.470	6.6e-05

FB|FBgn0001078 ftz-f1 "ftz transcription factor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 41/68 (60%), Positives = 48/68 (70%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
             MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ +   M  D      +P     Y N+
Sbjct:   583 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 639

Query:    61 YIKQEIQI 68
              IKQEIQI
Sbjct:   640 NIKQEIQI 647

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0003677 "DNA binding" evidence=NAS;IDA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0007365 "periodic partitioning" evidence=IMP

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035075 "response to ecdysone" evidence=TAS

GO:0009725 "response to hormone stimulus" evidence=TAS

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=TAS

GO:0007552 "metamorphosis" evidence=IMP;TAS

GO:0003712 "transcription cofactor activity" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0002165 "instar larval or pupal development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0035074 "pupation" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0035626 "juvenile hormone mediated signaling pathway" evidence=IMP

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IDA

UNIPROTKB|F1LQ71 Nr5a1 "Steroidogenic factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
             MRGGRNKFGPMYKRDRA K Q   Q
Sbjct:    88 MRGGRNKFGPMYKRDRALKQQKKAQ 112

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

MGI|MGI:1346833 Nr5a1 "nuclear receptor subfamily 5, group A, member 1" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
             MRGGRNKFGPMYKRDRA K Q   Q
Sbjct:    88 MRGGRNKFGPMYKRDRALKQQKKAQ 112

GO:0001553 "luteinization" evidence=IMP

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0008584 "male gonad development" evidence=IGI;IMP

GO:0009888 "tissue development" evidence=IMP

GO:0010259 "multicellular organismal aging" evidence=IMP

GO:0019899 "enzyme binding" evidence=ISO

GO:0022414 "reproductive process" evidence=IMP

GO:0030154 "cell differentiation" evidence=IGI

GO:0030325 "adrenal gland development" evidence=IGI;IMP

GO:0042445 "hormone metabolic process" evidence=IMP

GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IDA

GO:2000020 "positive regulation of male gonad development" evidence=ISO;IMP

GO:2000195 "negative regulation of female gonad development" evidence=IMP

RGD|68350 Nr5a1 "nuclear receptor subfamily 5, group A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
             MRGGRNKFGPMYKRDRA K Q   Q
Sbjct:    88 MRGGRNKFGPMYKRDRALKQQKKAQ 112

GO:0001553 "luteinization" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=NAS

GO:0005543 "phospholipid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA;ISO

GO:0008585 "female gonad development" evidence=IEP

GO:0009888 "tissue development" evidence=IEA;ISO

GO:0010259 "multicellular organismal aging" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0022414 "reproductive process" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA;ISO

GO:0030325 "adrenal gland development" evidence=IEA;ISO

GO:0030522 "intracellular receptor mediated signaling pathway" evidence=NAS

GO:0042445 "hormone metabolic process" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO

GO:2000020 "positive regulation of male gonad development" evidence=IEA;ISO

GO:2000195 "negative regulation of female gonad development" evidence=IEA;ISO

ZFIN|ZDB-GENE-040702-6 nr5a1b "nuclear receptor subfamily 5, group A, member 1b" [Danio rerio (taxid:7955)]

 Score = 101 (40.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSP 56
             MRGGRNKFGPMYKRDRA K Q     + +   ++   P +       +++ A + P
Sbjct:    88 MRGGRNKFGPMYKRDRALKQQKKALIRASGLKMEATPPLLTSPQPDYTFSTALSVP 143

GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5T6F6 NR5A1 "Steroidogenic factor 1" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 20/25 (80%), Positives = 20/25 (80%)

Query:     1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
             MRGGRNKFGPMYKRDRA K Q   Q
Sbjct:    88 MRGGRNKFGPMYKRDRALKQQKKAQ 112

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001553 "luteinization" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0009888 "tissue development" evidence=IEA

GO:0010259 "multicellular organismal aging" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030325 "adrenal gland development" evidence=IEA

GO:0042445 "hormone metabolic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:2000020 "positive regulation of male gonad development" evidence=IEA

GO:2000195 "negative regulation of female gonad development" evidence=IEA

UNIPROTKB|H0Y328 NR5A2 "Nuclear receptor subfamily 5 group A member 2" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query:     1 MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLS 48
             MRGGRNKFGPMYKRDRA K Q   ++R   + ++ + +    M  D +T+S
Sbjct:    82 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSD-LTIS 131

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-4652 nr5a5 "nuclear receptor subfamily 5, group A, member 5" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query:     1 MRGGRNKFGPMYKRDRARKLQM--MRQRQIA-----VQTLQRASPYMIGDGVTLSYNPAS 53
             MRGGRNKFGP+Y+RDR  K Q     Q  IA     ++  Q+  P +  D   ++ NPAS
Sbjct:   126 MRGGRNKFGPLYRRDRQLKQQRGTYHQANIAPYRVKIEGPQQLVPALPHDFHVINPNPAS 185

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IDA

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;NAS;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043401 "steroid hormone mediated signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|B4E2P3 NR5A2 "cDNA FLJ52395, highly similar to Orphan nuclear receptor NR5A2" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query:     1 MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLS 48
             MRGGRNKFGPMYKRDRA K Q   ++R   + ++ + +    M  D +T+S
Sbjct:    89 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSD-LTIS 138

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008206 "bile acid metabolic process" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O00482 NR5A2 "Nuclear receptor subfamily 5 group A member 2" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query:     1 MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLS 48
             MRGGRNKFGPMYKRDRA K Q   ++R   + ++ + +    M  D +T+S
Sbjct:   161 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSD-LTIS 210

GO:0003707 "steroid hormone receptor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0008206 "bile acid metabolic process" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009790 "embryo development" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0042592 "homeostatic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0005543 "phospholipid binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0045070 "positive regulation of viral genome replication" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33244	FTZF1_DROME	No assigned EC number	0.6744	0.7410	0.0808	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
cd07167	93	cd07167, NR_DBD_Lrh-1_like, The DNA-binding domain	2e-07

>gnl|CDD|143541 cd07167, NR_DBD_Lrh-1_like, The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 17/18 (94%), Positives = 17/18 (94%)

Query: 1  MRGGRNKFGPMYKRDRAR 18
          MRGGRNKFGPMYKRDRA 
Sbjct: 76 MRGGRNKFGPMYKRDRAL 93

The DNA-binding domain of Lrh-1 like nuclear receptor family like is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This nuclear receptor family includes at least three subgroups of receptors that function in embryo development and differentiation, and other processes. FTZ-F1 interacts with the cis-acting DNA motif of ftz gene, which is required at several stages of development. Particularly, FTZ-F1 regulated genes are strongly linked to steroid biosynthesis and sex-determination; LRH-1 is a regulator of bile-acid homeostasis, steroidogenesis, reverse cholesterol transport and the initial stages of embryonic development; SF-1 is an essential regulator of endocrine development and function and is considered a master regulator of reproduction; SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been identified as potential ligand for LRH-1 and steroidogenic factor-1 (SF-1). However, the ligand for FTZ-F1 has not yet been identified. Most nuclear receptors function as homodimer or heterodimers. However, LRH-1 and SF-1 bind to DNA as monomers. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, receptors in this family have a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG4218|consensus	475		99.64

>KOG4218|consensus

Probab=99.64  E-value=2e-16  Score=135.29  Aligned_cols=34  Identities=62%  Similarity=0.916  Sum_probs=30.7

Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHHhhhhhhhhhcc
Q psy12694          1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRA   36 (112)
Q Consensus         1 MRGGRNKFGPmYKRDRA~k~Q~~~qr~ia~~~l~~s   36 (112)
                      |||||||||||||||||+|||+.  .+|..++++.|
T Consensus        93 MRGGRNKFGpmYKrDRAlkqQkk--AqirAng~KlE  126 (475)
T KOG4218|consen   93 MRGGRNKFGPMYKRDRALKQQKK--AQIRANGIKLE  126 (475)
T ss_pred             hcccccccCchhhhhHHHHHHHH--HHhhhcceeee
Confidence            89999999999999999999984  56777888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
2ff0_A	102	Solution Structure Of Steroidogenic Factor 1 Dna Bi		4e-05
2a66_A	113	Human Liver Receptor Homologue Dna-Binding Domain (		5e-05

>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding Domain Bound To Its Target Sequence In The Inhibin Alpha- Subunit Promoter Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1  MRGGRNKFGPMYKRDRARKLQ 21
          MRGGRNKFGPMYKRDRA K Q
Sbjct: 79 MRGGRNKFGPMYKRDRALKQQ 99

>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1 Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter Length = 113

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1   MRGGRNKFGPMYKRDRARKLQ 21
           MRGGRNKFGPMYKRDRA K Q
Sbjct: 87  MRGGRNKFGPMYKRDRALKQQ 107
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 11/33 (33%)

Query: 63 KQEIQIPQVSSLTSS-----PDSSPSPIASHRT 90
          KQ ++      L +S      DS+P+ +A   T
Sbjct: 19 KQALK-----KLQASLKLYADDSAPA-LAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00