Psyllid ID: psy12705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MSATSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG
Secondary Structure (PSIPRED)
cccEEEEEcccEEEEEEEEEEEEEEccccccccccccccccEEEccccccccEEEEEEccccccccccccccccEEEEcEEEEcccccEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEcccccccccEEccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEccccEEEEEEEEEEEEccccccccccccccccEEEEEEcccccccEEEEEEccccEEEEccccccccEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msatsklvdignlsFQQEFKVQLLLQLhwkdprleyrhyaphitemvgernfiqniwtphiyltnerdslVLGLYRRDMLVsilpdgdmlfstrsRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWvsfwmapdavpgrtilgASTMLTFFQLGietgsslpnvsyirsndvWFFACTVFIFLSLAEFAFVNTIWRYG
Flexible Loop (DISEMBL)
msatsklvdignlsFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG
Low Complexity Region (SEG)
MSATSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG
Disordered region (IsUnstruct)
******LVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY*
Disordered Region (DISOPRED)
***TSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY*
Disordered Region (DISEMBL)
MSATSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG
Disordered Region (DISPRO)
*****KLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSATSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
P22771	452	Glycine receptor subunit	yes	N/A	0.495	0.223	0.427	8e-20
P23416	452	Glycine receptor subunit	no	N/A	0.495	0.223	0.427	8e-20
Q7TNC8	452	Glycine receptor subunit	yes	N/A	0.495	0.223	0.427	9e-20
P24524	464	Glycine receptor subunit	no	N/A	0.495	0.217	0.427	1e-19
O75311	464	Glycine receptor subunit	no	N/A	0.495	0.217	0.427	1e-19
Q91XP5	464	Glycine receptor subunit	no	N/A	0.495	0.217	0.427	1e-19
Q61603	456	Glycine receptor subunit	no	N/A	0.495	0.221	0.427	2e-19
Q5JXX5	417	Glycine receptor subunit	no	N/A	0.495	0.242	0.417	2e-19
O93430	444	Glycine receptor subunit	no	N/A	0.573	0.263	0.398	3e-19
P48167	497	Glycine receptor subunit	no	N/A	0.495	0.203	0.425	6e-19

>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 300

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).
Rattus norvegicus (taxid: 10116)

>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 300

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 300

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 240 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 299

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 300 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 342

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 240 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 299

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 300 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 342

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 240 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 299

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 300 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 342

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQ 300

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct: 301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing). May play a role in the maturation of reproductive organs.

Mus musculus (taxid: 10090)

>sp|Q5JXX5|GLRA4_HUMAN Glycine receptor subunit alpha-4 OS=Homo sapiens GN=GLRA4 PE=2 SV=3

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct: 242 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQ 301

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              + +SLP VSY+++ D+W   C +F+F +L E+A +N + R
Sbjct: 302 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSR 344

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)

Query: 86  DGDMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
           + D+ + T+      ++ +   F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P 
Sbjct: 216 EKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPA 275

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN I R
Sbjct: 276 RVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIAR 333

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Danio rerio (taxid: 7955)

>sp|P48167|GLRB_HUMAN Glycine receptor subunit beta OS=Homo sapiens GN=GLRB PE=1 SV=1

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y+ + + F L RQ GFY+M  YAP++L+V +SW+SFW+ PDA   R  LG  ++L+    
Sbjct: 253 YTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSLASE 312

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTI 200
                + LP VSY+++ DVW  AC +F F SL E+A V  +
Sbjct: 313 CTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVM 353

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
328712246	306	PREDICTED: glycine receptor subunit alph	0.539	0.359	0.754	1e-44
242014668	487	Acetylcholine receptor protein subunit d	0.514	0.215	0.679	6e-35
328698853	509	PREDICTED: gamma-aminobutyric acid recep	0.5	0.200	0.632	1e-32
195049119	546	GH24872 [Drosophila grimshawi] gi|193893	0.745	0.278	0.432	1e-30
24639780	524	CG6927 [Drosophila melanogaster] gi|7290	0.745	0.290	0.426	9e-30
194888497	524	GG18734 [Drosophila erecta] gi|190648576	0.745	0.290	0.426	1e-29
195476985	524	GE16374 [Drosophila yakuba] gi|194187576	0.745	0.290	0.426	1e-29
195565135	524	GD16712 [Drosophila simulans] gi|1942035	0.745	0.290	0.426	1e-29
195340725	524	GM12373 [Drosophila sechellia] gi|194131	0.745	0.290	0.426	1e-29
125983760	544	GA19960 [Drosophila pseudoobscura pseudo	0.745	0.279	0.426	2e-29

>gi|328712246|ref|XP_001942999.2| PREDICTED: glycine receptor subunit alpha-3-like [Acyrthosiphon pisum]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 94/110 (85%)

Query: 95  SRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML 154
           +  Y Y+SLTLTF+L R+YGFY+MD+Y P ILLV ISWVSFWMAPDA P R  +G STML
Sbjct: 71  TSTYRYTSLTLTFLLAREYGFYIMDYYVPGILLVTISWVSFWMAPDATPARVAIGTSTML 130

Query: 155 TFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
           T+FQLG++TGS LPNVSYIRSND+WF  CT FIFLSLAEFAFVNTIWRYG
Sbjct: 131 TYFQLGVDTGSKLPNVSYIRSNDLWFIVCTAFIFLSLAEFAFVNTIWRYG 180

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014668|ref|XP_002428007.1| Acetylcholine receptor protein subunit delta precursor, putative [Pediculus humanus corporis] gi|212512526|gb|EEB15269.1| Acetylcholine receptor protein subunit delta precursor, putative [Pediculus humanus corporis]

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 82/106 (77%)

Query: 97  AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTF 156
           A  YSSLT+ F L R+ G Y+MDFY PSILLV +SWVSFW+ P+AVPGRT LG STMLTF
Sbjct: 222 AGNYSSLTVKFQLEREIGHYIMDFYVPSILLVVVSWVSFWLDPNAVPGRTTLGTSTMLTF 281

Query: 157 FQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
             L   TGSSLP VSYI++ ++WF  CT FIF SL EFAFVNTIWR
Sbjct: 282 ITLTRNTGSSLPKVSYIKATEIWFLVCTAFIFGSLVEFAFVNTIWR 327

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698853|ref|XP_001950325.2| PREDICTED: gamma-aminobutyric acid receptor subunit rho-3-like [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 79/106 (74%)

Query: 97  AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTF 156
           A  YS L + F L R+ G Y+MD+Y PSI+LV +SWVSFW+ P+AVPGRT LG STMLTF
Sbjct: 268 AGNYSQLIVNFELEREVGHYIMDYYVPSIMLVVVSWVSFWLDPNAVPGRTTLGTSTMLTF 327

Query: 157 FQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
             L    GSSLP VSYI++ ++WF  CT FIF SL EFAFVNTIWR
Sbjct: 328 ITLSRNIGSSLPKVSYIKATEIWFIVCTAFIFGSLVEFAFVNTIWR 373

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195049119|ref|XP_001992656.1| GH24872 [Drosophila grimshawi] gi|193893497|gb|EDV92363.1| GH24872 [Drosophila grimshawi]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 98/178 (55%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L +HW+  R      A H+TE V     +QN W+    +  +   L  G +         
Sbjct: 199 LVMHWEQKRPITYDPALHLTEFV-----LQNSWSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  LNR  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLNRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24639780|ref|NP_572194.1| CG6927 [Drosophila melanogaster] gi|7290540|gb|AAF45992.1| CG6927 [Drosophila melanogaster] gi|33589566|gb|AAQ22550.1| LD07278p [Drosophila melanogaster]

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE V +R+     W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDGALHLTEFVLQRS-----WSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194888497|ref|XP_001976927.1| GG18734 [Drosophila erecta] gi|190648576|gb|EDV45854.1| GG18734 [Drosophila erecta]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE V +R+     W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDGALHLTEFVLQRS-----WSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195476985|ref|XP_002100052.1| GE16374 [Drosophila yakuba] gi|194187576|gb|EDX01160.1| GE16374 [Drosophila yakuba]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE V +R+     W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDGALHLTEFVLQRS-----WSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195565135|ref|XP_002106161.1| GD16712 [Drosophila simulans] gi|194203533|gb|EDX17109.1| GD16712 [Drosophila simulans]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE V +R+     W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDGALHLTEFVLQRS-----WSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195340725|ref|XP_002036963.1| GM12373 [Drosophila sechellia] gi|194131079|gb|EDW53122.1| GM12373 [Drosophila sechellia]

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE V +R+     W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDGALHLTEFVLQRS-----WSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG ST+LTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983760|ref|XP_001355645.1| GA19960 [Drosophila pseudoobscura pseudoobscura] gi|54643961|gb|EAL32704.1| GA19960 [Drosophila pseudoobscura pseudoobscura]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 96/178 (53%), Gaps = 26/178 (14%)

Query: 25  LQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLVSIL 84
           L LHW+  R      A H+TE +     +Q  W+    +  +   L  G +         
Sbjct: 199 LVLHWEQKRPITYDPALHLTEFL-----LQRSWSNETVINADLSDLRHGAF--------- 244

Query: 85  PDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPG 144
                       A  YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P 
Sbjct: 245 ------------AGNYSSLSFTVHLTRVVGFYLMDYFFPSMLIVAISWVSFWLQADQAPP 292

Query: 145 RTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
           R  LG STMLTF  L    G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct: 293 RITLGTSTMLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0029733	524	CG6927 [Drosophila melanogaste	0.504	0.196	0.592	1.4e-32
UNIPROTKB|F1MNR0	375	GLRA3 "Uncharacterized protein	0.563	0.306	0.396	5.7e-31
UNIPROTKB|F1RJ16	376	GLRA3 "Uncharacterized protein	0.563	0.305	0.396	5.9e-31
FB|FBgn0036727	509	CG7589 [Drosophila melanogaste	0.558	0.223	0.563	2.9e-30
UNIPROTKB|Q5JXX5	417	GLRA4 "Glycine receptor subuni	0.504	0.247	0.417	4.1e-30
ZFIN|ZDB-GENE-020402-1	450	glra3 "glycine receptor, alpha	0.588	0.266	0.401	5.2e-30
UNIPROTKB|F1Q2X8	409	GLRA3 "Uncharacterized protein	0.563	0.281	0.396	6.2e-30
UNIPROTKB|Q14C71	366	GLRA1 "GLRA1 protein" [Homo sa	0.563	0.314	0.387	7.6e-30
MGI|MGI:95750	456	Glra4 "glycine receptor, alpha	0.504	0.225	0.427	8.4e-30
RGD|1564103	456	Glra4 "glycine receptor, alpha	0.504	0.225	0.427	8.4e-30

FB|FBgn0029733 CG6927 [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
 Identities = 61/103 (59%), Positives = 74/103 (71%)

Query:   100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
             YSSL+ T  L R  GFYLMD++ PS+L+V ISWVSFW+  D  P R  LG ST+LTF  L
Sbjct:   248 YSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITL 307

Query:   160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
                 G +LP VSYI+ ++VWF  CT+FIF S+ EFAFVNTIWR
Sbjct:   308 ASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR 350

GO:0016935 "glycine-gated chloride channel complex" evidence=ISS

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
 Identities = 46/116 (39%), Positives = 72/116 (62%)

Query:    88 DMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRT 146
             D+ + T+      ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R 
Sbjct:   140 DLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARV 199

Query:   147 ILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   200 ALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 255

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
 Identities = 46/116 (39%), Positives = 72/116 (62%)

Query:    88 DMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRT 146
             D+ + T+      ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R 
Sbjct:   139 DLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARV 198

Query:   147 ILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   199 ALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 254

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

FB|FBgn0036727 CG7589 [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 2.9e-30, P = 2.9e-30
 Identities = 67/119 (56%), Positives = 82/119 (68%)

Query:    86 DGDMLFSTRSRAYM--YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVP 143
             DGD L   R  A+   YSSL+ T  L R+ GFYL+D+Y PS+++V ISWVSFW+  DA P
Sbjct:   241 DGDNL---RHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASP 297

Query:   144 GRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              R +LG STML+F  L      +LP VSYI+ ++VWF  CT FIF SL EFAFVNTIWR
Sbjct:   298 PRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWR 356

GO:0016933 "extracellular-glycine-gated ion channel activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|Q5JXX5 GLRA4 "Glycine receptor subunit alpha-4" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
 Identities = 43/103 (41%), Positives = 67/103 (65%)

Query:   100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
             ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct:   242 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQ 301

Query:   160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
                + +SLP VSY+++ D+W   C +F+F +L E+A +N + R
Sbjct:   302 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSR 344

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

ZFIN|ZDB-GENE-020402-1 glra3 "glycine receptor, alpha 3" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 5.2e-30, Sum P(2) = 5.2e-30
 Identities = 49/122 (40%), Positives = 75/122 (61%)

Query:    83 ILPD-GDMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPD 140
             IL D  D+ + T+      ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  D
Sbjct:   221 ILKDESDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMD 280

Query:   141 AVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTI 200
             A P R  LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN +
Sbjct:   281 AAPARVALGITTVLTMTTQSSGSRTSLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFV 340

Query:   201 WR 202
              R
Sbjct:   341 SR 342

GO:0016594 "glycine binding" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1Q2X8 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
 Identities = 46/116 (39%), Positives = 72/116 (62%)

Query:    88 DMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRT 146
             D+ + T+      ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R 
Sbjct:   187 DLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARV 246

Query:   147 ILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   247 ALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 302

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|Q14C71 GLRA1 "GLRA1 protein" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 7.6e-30, Sum P(2) = 7.6e-30
 Identities = 45/116 (38%), Positives = 71/116 (61%)

Query:    88 DMLFSTRS-RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRT 146
             D+ + T+      ++ +   F L RQ G+YL+  Y PS+L+V +SW+SFW+  DA P R 
Sbjct:   139 DLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARV 198

Query:   147 ILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
              LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   199 GLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR 254

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:95750 Glra4 "glycine receptor, alpha 4 subunit" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query:   100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
             ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct:   241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQ 300

Query:   160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
                + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|1564103 Glra4 "glycine receptor, alpha 4" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
 Identities = 44/103 (42%), Positives = 67/103 (65%)

Query:   100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
             ++ + + F L RQ G+YL+  Y PS+L+V +SWVSFW+  DA P R  LG +T+LT    
Sbjct:   241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQ 300

Query:   160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
                + +SLP VSY+++ D+W   C +F+F +L E+A VN + R
Sbjct:   301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR 343

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	7e-28
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	1e-16
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	1e-06
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	3e-04

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  108 bits (272), Expect = 7e-28
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTF--F 157
           Y  LT +F+L R+  +YL+  Y PSIL+V +SWVSFW+  DA   R  LG +T+LT   F
Sbjct: 227 YPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTF 286

Query: 158 QLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWR 202
             G+    SLP VSY+++ DV+F  C  F+FL+L E AFVN +  
Sbjct: 287 SSGVR--ESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHH 329

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 121 YAPSILLVCISWVSFWMAPDAVPGRTILGASTML--TFFQLGIETGSSLPNVSYIRSNDV 178
             P +L+  +SW+ FW+  DA P +  LG +T+L  T F L I    SLP  SY+     
Sbjct: 2   IIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIR--ESLPKTSYVVPLIG 59

Query: 179 WFFACTVFIFLSLAEFAFVN 198
            +   T+F+F +  E+A V 
Sbjct: 60  KYLVFTMFVFTASVEYAVVV 79

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 16  QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFI----QNIWTPHIYLTNERDSLV 71
            Q+    + L+  W D RL +        E  G    +      IW P I L N+ D + 
Sbjct: 44  NQDLTTNVWLRQQWTDERLAWDP------EDYGGITSLRLPSDKIWKPDIVLYNKADGIH 97

Query: 72  LGLYRRDMLVSILPDGDMLFSTR 94
                 +  V + PDG +L+S  
Sbjct: 98  DITT-PNTNVRVYPDGTVLWSPP 119

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 17  QEFKVQLLLQLHWKDPRLEYRHY-APHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLY 75
            ++   + L+  W D RL++     P +T +        +IW P I+  NE+D+   G+ 
Sbjct: 74  MDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPD---DSIWVPDIFFYNEKDARFHGIT 130

Query: 76  RRDMLVSILPDGDMLFSTR 94
             ++LV I P+G +L+S R
Sbjct: 131 MTNVLVRIHPNGSVLYSPR 149

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG3643|consensus	459		100.0
TIGR00860	459	LIC Cation transporter family protein. selective w	100.0
KOG3644|consensus	457		100.0
KOG3642|consensus	466		100.0
KOG3646|consensus	486		100.0
KOG3645|consensus	449		100.0
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.82
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.74

>KOG3643|consensus

Probab=100.00  E-value=3.3e-52  Score=348.22  Aligned_cols=199  Identities=37%  Similarity=0.729  Sum_probs=190.3

Q ss_pred             eeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeEE
Q psy12705          3 ATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLV   81 (204)
Q Consensus         3 ~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~~   81 (204)
                      .++++.+|..|+| +|++++++|++|.|+||||+|+.  .+.++++++....+++|+||.+|.|++++.+|+.+..|..+
T Consensus        63 i~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~--~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~l  140 (459)
T KOG3643|consen   63 ITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSS--KNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLL  140 (459)
T ss_pred             EEEEEeeechhccccchhhhhhhhhhhhcCcccccCC--CCCceEEEchhhhhccccCceecccCcccccceeeecceEE
Confidence            4689999999999 99999999999999999999993  34457888888999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeee------------------------------------------------------------------
Q psy12705         82 SILPDGDMLFSTRS------------------------------------------------------------------   95 (204)
Q Consensus        82 ~i~~~G~V~~~~r~------------------------------------------------------------------   95 (204)
                      |+.+||+|+|+.|+                                                                  
T Consensus       141 Rl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~  220 (459)
T KOG3643|consen  141 RLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSR  220 (459)
T ss_pred             EEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEE
Confidence            99999999999998                                                                  


Q ss_pred             ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705         96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS  171 (204)
Q Consensus        96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s  171 (204)
                          .+|+|+++...|+++|+.+||++++++|+++++++||++||++.|+.++|+.+|+|++|+|+++....++.||++|
T Consensus       221 ~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS  300 (459)
T KOG3643|consen  221 LVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS  300 (459)
T ss_pred             EEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence                6889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhheeeeeec
Q psy12705        172 YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY  203 (204)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~  203 (204)
                      |++++|+|+.+|++|+|+|++|+++|+|..++
T Consensus       301 YVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~  332 (459)
T KOG3643|consen  301 YVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKR  332 (459)
T ss_pred             ceeeehhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998763

>TIGR00860 LIC Cation transporter family protein

Probab=100.00  E-value=2.7e-48  Score=339.53  Aligned_cols=201  Identities=36%  Similarity=0.647  Sum_probs=184.3

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.+.+|.++|| +|++++++|++|+|+|+||+|||++++  ++.....+.++||+||++++|++++..+.....+..
T Consensus        58 ~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~--~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~  135 (459)
T TIGR00860        58 SFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYP--GVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVL  135 (459)
T ss_pred             EEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCC--CceeccccccccccCcEEeecCccccccccccCceE
Confidence            57899999999999 999999999999999999999998743  344444567999999999999999887776666778


Q ss_pred             EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705         81 VSILPDGDMLFSTRS-----------------------------------------------------------------   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~-----------------------------------------------------------------   95 (204)
                      +++++||+|.|..|.                                                                 
T Consensus       136 v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~  215 (459)
T TIGR00860       136 VRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFELLGVYGT  215 (459)
T ss_pred             EEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECCCCceEechhhccccCceEEEeeeee
Confidence            888889999998766                                                                 


Q ss_pred             -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705         96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP  168 (204)
Q Consensus        96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP  168 (204)
                             +++.|+++.+++++||++.||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.+|
T Consensus       216 ~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP  295 (459)
T TIGR00860       216 RYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLP  295 (459)
T ss_pred             eeEecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCC
Confidence                   2456899999999999999999999999999999999999999997799999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        169 NVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       169 ~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++||+|++|+|+.+|++++++|++|+++|+++++|+
T Consensus       296 ~~S~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~  331 (459)
T TIGR00860       296 AVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKD  331 (459)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhheeEEccC
Confidence            999999999999999999999999999999999985

selective while glycine receptors are anion selective).

>KOG3644|consensus

Probab=100.00  E-value=2.9e-47  Score=328.77  Aligned_cols=198  Identities=37%  Similarity=0.711  Sum_probs=183.6

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCcc-CC-C---Ccceeeeccccccccccccceeeeccccceeecee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYR-HY-A---PHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLY   75 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~-~~-~---~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~   75 (204)
                      +.++++.+|.+++| +++|++|+|++++|.||||+++ .+ +   .|..++..    .++||.||++|.|++...+|+.+
T Consensus        69 ~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~----~~~iW~Pd~~F~NsK~a~~H~~~  144 (457)
T KOG3644|consen   69 SVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSL----KQKIWTPDTFFANSKSAEFHKST  144 (457)
T ss_pred             EEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCccccccccccccc----CCceecCceeeecccceeeecCC
Confidence            57899999999999 9999999999999999999988 33 2   22222322    26799999999999999999999


Q ss_pred             eeeeEEEEecCCeEEEEeee------------------------------------------------------------
Q psy12705         76 RRDMLVSILPDGDMLFSTRS------------------------------------------------------------   95 (204)
Q Consensus        76 ~~~~~~~i~~~G~V~~~~r~------------------------------------------------------------   95 (204)
                      .+|..++|+|||+|+++.|+                                                            
T Consensus       145 ~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~  224 (457)
T KOG3644|consen  145 KPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSF  224 (457)
T ss_pred             CCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCCCcccccCccCCceeccce
Confidence            99999999999999999987                                                            


Q ss_pred             ---------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcC
Q psy12705         96 ---------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSS  166 (204)
Q Consensus        96 ---------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~  166 (204)
                               ++|.|++++++++++|+.+||+++.|+|+.+++++||++|||+++++++|+++|+|+||++++....+..+
T Consensus       225 ~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~  304 (457)
T KOG3644|consen  225 STEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRN  304 (457)
T ss_pred             eeccccccccCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhc
Confidence                     56789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeec
Q psy12705        167 LPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY  203 (204)
Q Consensus       167 lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~  203 (204)
                      ||++||++++|+|+++|++|+|+|++|.++|+++.+|
T Consensus       305 LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~  341 (457)
T KOG3644|consen  305 LPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR  341 (457)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999875

>KOG3642|consensus

Probab=100.00  E-value=3.1e-44  Score=301.97  Aligned_cols=196  Identities=33%  Similarity=0.625  Sum_probs=186.3

Q ss_pred             eeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeEE
Q psy12705          3 ATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLV   81 (204)
Q Consensus         3 ~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~~   81 (204)
                      ..+++.+...|++ ++++++|.+++|.|.|.||.++....   .+.+.....++||+||.+|.|++++..|..+.+|..+
T Consensus        72 ~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~---~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~  148 (466)
T KOG3642|consen   72 TDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQE---ALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLV  148 (466)
T ss_pred             EEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcch---hhccchhhhcCcccCCcccccCcccceeeccCCCceE
Confidence            4688999999999 99999999999999999999995322   2666677889999999999999999999999999999


Q ss_pred             EEecCCeEEEEeee------------------------------------------------------------------
Q psy12705         82 SILPDGDMLFSTRS------------------------------------------------------------------   95 (204)
Q Consensus        82 ~i~~~G~V~~~~r~------------------------------------------------------------------   95 (204)
                      ||..||+|.|+.|+                                                                  
T Consensus       149 Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~~VeV~~~~~~~L~Qf~l~g~~~~te  228 (466)
T KOG3642|consen  149 RIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKRSVEVNETDSWSLDQFDLLGVSVGTE  228 (466)
T ss_pred             EEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecccEEEcCCCCccccceeeeccccccc
Confidence            99999999999988                                                                  


Q ss_pred             ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705         96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS  171 (204)
Q Consensus        96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s  171 (204)
                          ..|+|+.++..|+++|+.+||+++.++||++.+++||++||+..|++++|.++|+|++|+|+++....+.++|+++
T Consensus       229 ~i~t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVs  308 (466)
T KOG3642|consen  229 DIKTSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVS  308 (466)
T ss_pred             ceEecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccc
Confidence                5789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhheeeee
Q psy12705        172 YIRSNDVWFFACTVFIFLSLAEFAFVNTIW  201 (204)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~sli~~~~v~~l~  201 (204)
                      |.|++|+|+++|++|+|+|++|++.|+|+.
T Consensus       309 y~TAmD~fIavCf~FvFsaliEfa~vNYft  338 (466)
T KOG3642|consen  309 YATALDVFIAVCFIFVFAALVEFAVVNYFT  338 (466)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHheeeee
Confidence            999999999999999999999999999998

>KOG3646|consensus

Probab=100.00  E-value=1.6e-43  Score=297.27  Aligned_cols=198  Identities=20%  Similarity=0.304  Sum_probs=181.8

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.++||.+||| ||.+++++|++++|+|.+|+|||+++|  ||+..+.+.++||+||+.+||+++++++.....|  
T Consensus        55 ~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseyg--nI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN--  130 (486)
T KOG3646|consen   55 KLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYG--NITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTN--  130 (486)
T ss_pred             EeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhC--CceeeccCCccccCCceeccccccccCCCcceee--
Confidence            56889999999999 999999999999999999999999954  4555455678999999999999999987766554  


Q ss_pred             EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705         81 VSILPDGDMLFSTRS-----------------------------------------------------------------   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~-----------------------------------------------------------------   95 (204)
                      +.++++|.|.|..+-                                                                 
T Consensus       131 ~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr  210 (486)
T KOG3646|consen  131 YVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKR  210 (486)
T ss_pred             EEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccc
Confidence            679999999997652                                                                 


Q ss_pred             -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705         96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP  168 (204)
Q Consensus        96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP  168 (204)
                             +.+.|..+.|.+++|||..||.+|+++||.++.++++++|-+|||+ |||+++++|.+|+..+|+.++++..|
T Consensus       211 ~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~P  289 (486)
T KOG3646|consen  211 EEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTP  289 (486)
T ss_pred             eeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcC
Confidence                   3557889999999999999999999999999999999999999987 89999999999999999999999999


Q ss_pred             CCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        169 NVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       169 ~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++| .+|++++|+.+|++++.+|++.+++|+++|+|.
T Consensus       290 pTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~  326 (486)
T KOG3646|consen  290 PTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT  326 (486)
T ss_pred             CccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence            999 999999999999999999999999999999984

>KOG3645|consensus

Probab=100.00  E-value=7.2e-41  Score=291.88  Aligned_cols=199  Identities=19%  Similarity=0.285  Sum_probs=178.1

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.+.+|.+||| +|.+++++|+.++|+|+||+|||++++  +++..+.+.++||+||++++|+++++.......+  
T Consensus        58 ~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~--~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~~--  133 (449)
T KOG3645|consen   58 NFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYG--GITKIRVPSSKIWLPDIVLYNNADGDFEVEDLTN--  133 (449)
T ss_pred             EEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcC--CceEEEecHHHcCcCcEEEEecccccccccccce--
Confidence            46788999999999 999999999999999999999998843  4444455689999999999998877765544443  


Q ss_pred             EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705         81 VSILPDGDMLFSTRS-----------------------------------------------------------------   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~-----------------------------------------------------------------   95 (204)
                      +.++++|+|.+..+.                                                                 
T Consensus       134 v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~  213 (449)
T KOG3645|consen  134 VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVV  213 (449)
T ss_pred             EEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeE
Confidence            789999999887554                                                                 


Q ss_pred             --------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCC
Q psy12705         96 --------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSL  167 (204)
Q Consensus        96 --------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~l  167 (204)
                              +++.|+.+.|.+++||||.||++++++||+++.+++.++||+|+++.++|+++|++++|++++++..+++.+
T Consensus       214 ~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~  293 (449)
T KOG3645|consen  214 REEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKM  293 (449)
T ss_pred             EeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhc
Confidence                    123489999999999999999999999999999999999999988866999999999999999999999999


Q ss_pred             CCCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        168 PNVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       168 P~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      |++| .+|+++.|+..++++++++++.++++.++++|+
T Consensus       294 P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~  331 (449)
T KOG3645|consen  294 PPTSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRS  331 (449)
T ss_pred             CCccCcchHHHHHHHHHHHHHHHHHHHheeEEeeeccc
Confidence            9999 599999999999999999999999999999986

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.82  E-value=5.1e-20  Score=146.34  Aligned_cols=90  Identities=28%  Similarity=0.448  Sum_probs=69.3

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      ++++++.+|.++|| ++++++++++.++|+|+||+|++++. +++.+.+   +.++||+||++++|..+... .....+.
T Consensus        29 ~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v---~~~~iW~P~l~~~n~~~~~~-~~~~~~~  104 (217)
T PF02931_consen   29 SVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRV---PSSQIWTPDLYFYNSVSGSF-EITEPNS  104 (217)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEE---EGGGS----EEETTBSSSEE-ECS-SSE
T ss_pred             EEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccc---cccceEecccccccccccce-ecccccc
Confidence            67899999999999 99999999999999999999999884 5555554   46799999999999555433 2233457


Q ss_pred             EEEEecCCeEEEEeee
Q psy12705         80 LVSILPDGDMLFSTRS   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~   95 (204)
                      .++|++||+|.+..++
T Consensus       105 ~~~v~~~G~V~~~~~~  120 (217)
T PF02931_consen  105 NVRVYSDGTVRYSPRF  120 (217)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             cccccccchheeeecc
Confidence            7899999999998766

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.74  E-value=3.3e-20  Score=144.82  Aligned_cols=82  Identities=38%  Similarity=0.777  Sum_probs=75.9

Q ss_pred             hhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheee
Q psy12705        120 FYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNT  199 (204)
Q Consensus       120 ~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~  199 (204)
                      +++||++++++||++||+|+++.+||+++|+|++|++++++..+++.||++||.+.+|.|+.+|+++++.+++|++++.+
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~   80 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence            58999999999999999999996699999999999999999999999999999999999999999999999999977665


Q ss_pred             ee
Q psy12705        200 IW  201 (204)
Q Consensus       200 l~  201 (204)
                      ..
T Consensus        81 ~~   82 (237)
T PF02932_consen   81 NI   82 (237)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		2e-22
1vry_A	76	Second And Third Transmembrane Domains Of The Alpha		1e-07
3tlt_A	321	The Glic Pentameric Ligand-Gated Ion Channel H11'f		9e-04

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 63/106 (59%)
Query: 99  MYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQ 158
           +YS L  T  L R++ FYL+  Y PS +LV +SWVSFW    A+P R  LG +T+LT   
Sbjct: 199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTA 258
Query: 159 LGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                 S LP VSYI++ DVW  AC  FIF +L EFA VN I   G
Sbjct: 259 QSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG 304

>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor Length = 76

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 142 VPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIW 201
           +P R  LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + 
Sbjct: 1   LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60
Query: 202 R 202
           R
Sbjct: 61  R 61

>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 19/197 (9%)
Query: 5   SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
           + +VDI     G + + + F  ++L  L ++  R  +     HI      V  RN +  +
Sbjct: 91  ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57  WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
               +    + D + L  +  +   +++   +     R    + S L     ++RQY  Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
           + +   P + ++ ISW +FW    +      L  ST++ F    I   ++LP   Y+   
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAFIAFNILVETNLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
               F   +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	3e-37
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	7e-12
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	4e-33
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	9e-13
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	2e-32
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	7e-08
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	3e-18
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	2e-12
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	6e-08
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	7e-07
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	1e-06
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-06
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	7e-06
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	1e-04
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	2e-04
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-04
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	3e-04
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	8e-04

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  130 bits (329), Expect = 3e-37
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           +S +T+     R   +YL  F  P  L++  SW  FW+  ++   R     + MLT    
Sbjct: 188 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 245

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
              T + LP + Y    D    A    IF ++    F +     G
Sbjct: 246 AFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG 290

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 7   LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITE-MVGERNFIQNIWTPHIYLT 64
           +  I  ++  +Q +KV   +   W     +     P I E    ER     +W P +   
Sbjct: 20  INKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFI 79

Query: 65  NERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
           N   S        +  + + PDG ++++ R
Sbjct: 80  NVVGS----PDTGNKRLMLFPDGRVIYNAR 105

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  120 bits (302), Expect = 4e-33
 Identities = 51/105 (48%), Positives = 62/105 (59%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           YS L  T  L R++ FYL+  Y PS +LV +SWVSFW    A+P R  LG +T+LT    
Sbjct: 200 YSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQ 259

Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                S LP VSYI++ DVW  AC  FIF +L EFA VN I   G
Sbjct: 260 SAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG 304

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 7   LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTN 65
           L  I  +     E+  QL L+  W D RL Y        + V        IW P  +  N
Sbjct: 36  LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVI-LTVGHQIWMPDTFFPN 94

Query: 66  ERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
           E+ +    + + ++L+ I  DG +L+S R
Sbjct: 95  EKQAYKHTIDKPNVLIRIHNDGTVLYSVR 123

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  118 bits (297), Expect = 2e-32
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 98  YMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML--T 155
            + S L     ++RQY  Y+ +   P + ++ ISW +FW    +      L  ST++   
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240

Query: 156 FFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY 203
            F + +E  + LP   Y+       F   +F F+++ E    + +   
Sbjct: 241 AFNILVE--TCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVE 286

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 17  QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYR 76
           + FKV   L L WKD RL +      +          + IW P I   N  ++       
Sbjct: 39  ETFKVNAFLSLSWKDRRLAFDPVRSGVRVK---TYEPEAIWIPEIRFVNVENARD----A 91

Query: 77  RDMLVSILPDGDMLFSTR 94
             + +S+ PDG + +  R
Sbjct: 92  DVVDISVSPDGTVQYLER 109

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 74.5 bits (183), Expect = 3e-18
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 142 VPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIW 201
           +P R  LG +T+LT       + +SLP VSY+++ D+W   C +F+F +L E+A VN + 
Sbjct: 1   LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60

Query: 202 R 202
           R
Sbjct: 61  R 61

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 7   LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTN 65
           L++  +L    + FKV   L L WKD RL +      +     +    + IW P I   N
Sbjct: 24  LIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRV---KTYEPEAIWIPEIRFVN 80

Query: 66  ERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
             ++         + +S+ PDG + +  R
Sbjct: 81  VENA----RDADVVDISVSPDGTVQYLER 105

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           +  +    I+ R+  FY+++  AP +L+  +  + +++   A   +  L  S +L     
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
                  +P  S        +         + +     V
Sbjct: 258 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIV 296

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y  +T  FI+ R   +++++   P +L   ++ + F++  D+   +  L  S +L+    
Sbjct: 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVF 256

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            +     +P+ S        +   T +F+  S+     V
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVV 295

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y  +T   I+ R+  FY+++F  P +L+  ++ ++F++  ++   +       +L     
Sbjct: 197 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVF 255

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            + T   LP  +        +       +   +     V
Sbjct: 256 LLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIV 294

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y  +T   I+ R+  FY++    P IL+  ++ + F++ PDA   +  L  S +L     
Sbjct: 195 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVF 253

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            +     +P  S      + +     + +  S+     V
Sbjct: 254 LLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVV 292

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           +  +    I+ R+  FY+++  AP +L+  +  + +++   A   +  L  S +L     
Sbjct: 205 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 264

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
                  +P  S        +         + +     V
Sbjct: 265 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIV 303

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 14/105 (13%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML--TFF 157
           Y  +T  FI+ R   +++++   P +L   ++ + F++  D+   +  L  S +L  T F
Sbjct: 222 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVF 280

Query: 158 QLGI-----ETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFV 197
            L I      T S++P +        +     +F+  S+     V
Sbjct: 281 LLVIVELIPSTSSAVPLIG------KYMLFTMIFVISSIIVTVVV 319

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
             +L       R+  FY ++   P +L+  ++ + F++  D    +  L  S +L     
Sbjct: 15  TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVF 73

Query: 160 GIETGSSLP----NVSYIRSNDVWFFACTVFIFLSLAEFAFV 197
            +     +P    +V  +     +     V +  S+     V
Sbjct: 74  LLLISKIVPPTSLDVPLV---GKYLMFTMVLVTFSIVTSVCV 112

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y  +T   I+ R+  FY+++F  P +L+  ++ ++F++  ++   +       +L     
Sbjct: 233 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVF 291

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            + T   LP  +        +       +   +     V
Sbjct: 292 LLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIV 330

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
           Y  +T   I+ R+  FY++    P IL+  ++ + F++ PDA   +  L  S +L     
Sbjct: 228 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVF 286

Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            +     +P  S      + +     + +  S+     V
Sbjct: 287 LLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVV 325

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 12/105 (11%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 100 YSSLTLTFILNRQYG------FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTM 153
                    L+++ G      +++++   P      ++ + F++  D+   +     S +
Sbjct: 30  SVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVL 88

Query: 154 LTFFQLGIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
            +  +   +    +P+ S        +   T  F+  S+     V
Sbjct: 89  KSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEV 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	100.0
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	100.0
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	100.0
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	100.0
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	100.0
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	100.0
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	100.0
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	100.0
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	100.0
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	100.0
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	100.0
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.95
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.95
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.93
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.93
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	99.91
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.9
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.89
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.89
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.89
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	99.89
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.88
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.87
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.83
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.82
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.82
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.82
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	99.65
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	95.81

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=100.00  E-value=2.9e-51  Score=346.45  Aligned_cols=201  Identities=37%  Similarity=0.666  Sum_probs=185.7

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+.  +.++||+||++++|++++.++..+.++.
T Consensus        31 ~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~--~~~~IW~PDi~l~N~~~~~~~~~~~~n~  108 (347)
T 3rhw_A           31 SVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILT--VGHQIWMPDTFFPNEKQAYKHTIDKPNV  108 (347)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECC--TTCCCCCCCEECTTEEEEEECCSSSCSE
T ss_pred             EEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEec--chhceecCCEeeeccccccccccccccE
Confidence            56899999999999 99999999999999999999999874 44445432  4599999999999999998888777888


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                      .++|++||+|.|..|.                                                                
T Consensus       109 ~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~  188 (347)
T 3rhw_A          109 LIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTST  188 (347)
T ss_dssp             EEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEE
T ss_pred             EEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEe
Confidence            8999999999998876                                                                


Q ss_pred             -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705         96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP  168 (204)
Q Consensus        96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP  168 (204)
                             .+|.|+++.+++++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.+|
T Consensus       189 ~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP  268 (347)
T 3rhw_A          189 TYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLP  268 (347)
T ss_dssp             EECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             eEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCC
Confidence                   1357899999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        169 NVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       169 ~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++||+|++|+|+.+|++++++|++|+++|++++++|
T Consensus       269 ~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~  304 (347)
T 3rhw_A          269 PVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG  304 (347)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999876

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=100.00  E-value=3.9e-49  Score=330.23  Aligned_cols=194  Identities=23%  Similarity=0.419  Sum_probs=178.6

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+||+++++.   +..+.+.++||+||++++|++++.    ..++..
T Consensus        23 ~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i---~~~~~~~~~IW~PDi~l~N~~~~~----~~~~~~   95 (321)
T 3tlw_A           23 NTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGV---RVKTYEPEAIWIPEIRFVNVENAR----DADVVD   95 (321)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCC---SSEECCGGGSCCCCEEESSBSSCC----EEEEEE
T ss_pred             EEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCe---eeecccccCeEcCcEEeecccccc----ccccee
Confidence            56899999999999 9999999999999999999999987653   444556899999999999999876    355678


Q ss_pred             EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705         81 VSILPDGDMLFSTRS-----------------------------------------------------------------   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~-----------------------------------------------------------------   95 (204)
                      ++|++||+|.|..|.                                                                 
T Consensus        96 ~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~  175 (321)
T 3tlw_A           96 ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKP  175 (321)
T ss_dssp             EEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECGGGCEECTTCCBTTEEEEEEEEEEEE
T ss_pred             EEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcCCcccccccccccceEEEeeEeEEee
Confidence            999999999998876                                                                 


Q ss_pred             -----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCC
Q psy12705         96 -----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNV  170 (204)
Q Consensus        96 -----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~  170 (204)
                           ++|+|+++.+++++||+++||++++++||+++++++|++|| |++ .++|+++|+|++|++++++..+++.+|++
T Consensus       176 ~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~-~~~Rv~l~it~lL~~t~~~~~~~~~lP~~  253 (321)
T 3tlw_A          176 ANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STS-YEANVTLVVSTLIAHIAFNILVETCLPKT  253 (321)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             EEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCC-CCCcEEEEhhHHHHHHHHHHHHHhhCCCc
Confidence                 34679999999999999999999999999999999999999 655 58999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        171 SYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       171 s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ||+|++|+|+.+|++++++|++|+++|+++++||
T Consensus       254 s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~  287 (321)
T 3tlw_A          254 PYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVES  287 (321)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Confidence            9999999999999999999999999999999886

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=1.1e-49  Score=339.33  Aligned_cols=197  Identities=16%  Similarity=0.279  Sum_probs=179.8

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+   +.++||+||++++|++++.++...  +.
T Consensus        32 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~--~~  106 (370)
T 2bg9_A           32 TVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL---PSDDVWLPDLVLYNNADGDFAIVH--MT  106 (370)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEE---EGGGSCCCCEEETTCCCSCEESCS--SC
T ss_pred             EEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEe---chhhccCCcEeccccccccccccc--cc
Confidence            56899999999999 99999999999999999999999874 4444544   479999999999999998877643  45


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                      .++|++||+|.|..|.                                                                
T Consensus       107 ~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~  186 (370)
T 2bg9_A          107 KLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH  186 (370)
T ss_dssp             EEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSTTSCCTTCSSEEEEEEEEEE
T ss_pred             eEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCCCcccccccccceEEEEcceEEEE
Confidence            6899999999998776                                                                


Q ss_pred             -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705         96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP  168 (204)
Q Consensus        96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP  168 (204)
                             ++|+|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.+|
T Consensus       187 ~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP  265 (370)
T 2bg9_A          187 WVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIP  265 (370)
T ss_dssp             ECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCC
Confidence                   1257999999999999999999999999999999999999999998 89999999999999999999999999


Q ss_pred             CCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        169 NVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       169 ~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++|| +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus       266 ~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~~~~r~  302 (370)
T 2bg9_A          266 STSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRS  302 (370)
T ss_dssp             HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            9996 99999999999999999999999999998875

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=1.9e-49  Score=337.85  Aligned_cols=198  Identities=16%  Similarity=0.304  Sum_probs=179.6

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCc-ceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPH-ITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~-~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|||++++ .+.+   +.+.++||+||++++|++++.++.....+ 
T Consensus        31 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l---~v~~~~IW~PDi~~~N~~~~~~~~~~~~~-  106 (370)
T 2bg9_E           31 TLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLV---RIPSELLWLPDVVLENNVDGQFEVAYYAN-  106 (370)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCB---CCCGGGSCCCCEEESSSCCSCCBSSSSCC-
T ss_pred             EEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEE---eechhccCCCCEeeccccCCccccccccc-
Confidence            56899999999999 999999999999999999999998844 4444   44569999999999999998877654444 


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                       +.|++||+|.|..|.                                                                
T Consensus       107 -~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~  185 (370)
T 2bg9_E          107 -VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKK  185 (370)
T ss_dssp             -CEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCCGGGSCCTTSSEEEEECCCCE
T ss_pred             -EEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcccHhhcccccEEEEecceeEE
Confidence             569999999998776                                                                


Q ss_pred             --------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCC
Q psy12705         96 --------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSL  167 (204)
Q Consensus        96 --------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~l  167 (204)
                              ++|+|+++.+++++||+++||++++++||++++++||++||+|+++.++|+++|+|++|++++++..+++.+
T Consensus       186 ~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~l  265 (370)
T 2bg9_E          186 NYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKV  265 (370)
T ss_dssp             ECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhC
Confidence                    135688999999999999999999999999999999999999999779999999999999999999999999


Q ss_pred             CCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        168 PNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       168 P~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      |++|| +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus       266 P~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~  303 (370)
T 2bg9_E          266 PETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRT  303 (370)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCccCCCChHHHHHHHHHHHHHHHHHHHhhheeeeccC
Confidence            99997 99999999999999999999999999998875

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=5.3e-49  Score=334.96  Aligned_cols=197  Identities=17%  Similarity=0.286  Sum_probs=178.8

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+   +.++||+||++++|++++.++.....+ 
T Consensus        34 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~~~~-  109 (369)
T 2bg9_C           34 ALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL---RPELIWIPDIVLQNNNDGQYNVAYFCN-  109 (369)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEE---CGGGSCCCCEEETTTCSSCCBSSSSCC-
T ss_pred             EEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEe---cHHhccCCcEecccccccccccccccc-
Confidence            57899999999999 99999999999999999999999884 3444544   469999999999999998877654444 


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                       ++|++||+|.|..|.                                                                
T Consensus       110 -~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~ew~l~~~~~~~~~~~  188 (369)
T 2bg9_C          110 -VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYG  188 (369)
T ss_dssp             -EEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECCCGGGSCCTTSSEEEEECCEEEEECC
T ss_pred             -EEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEecccccceeCCEEEEeeeeEEEEEEe
Confidence             679999999998776                                                                


Q ss_pred             ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705         96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS  171 (204)
Q Consensus        96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s  171 (204)
                          ++|+|+++.+++++||+++||++++++||++++++||++||+|++ .++|+++|+|++|++++++..+++.+|++|
T Consensus       189 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S  267 (369)
T 2bg9_C          189 DKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETA  267 (369)
T ss_dssp             CSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCc
Confidence                145689999999999999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        172 Y-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       172 ~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      | +|++|+|+.+|++++++|++|++++.++++|+
T Consensus       268 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~  301 (369)
T 2bg9_C          268 LAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRT  301 (369)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhheeeeeccC
Confidence            6 99999999999999999999999998888775

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=1.3e-48  Score=332.73  Aligned_cols=197  Identities=19%  Similarity=0.310  Sum_probs=178.6

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+||++++ +.+.+.+   +.++||+||++++|++++.++.....  
T Consensus        32 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~~~--  106 (370)
T 2bg9_B           32 RVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI---PSDDVWQPDIVLMNNNDGSFEITLHV--  106 (370)
T ss_dssp             EEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEE---ESSSSCCCCEEESSCCCSCEESSSSC--
T ss_pred             EEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEe---chhhccCCCccccccccccccccccc--
Confidence            46788999999999 99999999999999999999999884 4445554   46999999999999999887765443  


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                      .++|++||+|.|..|.                                                                
T Consensus       107 ~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~  186 (370)
T 2bg9_B          107 NVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSRK  186 (370)
T ss_dssp             EEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCCCCSTTSCCTTCSSEECCCCEEE
T ss_pred             eEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccCCccccccccccceEEEeccceEE
Confidence            4679999999998776                                                                


Q ss_pred             ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705         96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS  171 (204)
Q Consensus        96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s  171 (204)
                          ++|+|+++.+++++||+++||++++++||+++++++|++||+|++ .++|+++|+|++|++++++..+++.+|++|
T Consensus       187 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S  265 (370)
T 2bg9_B          187 NWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETS  265 (370)
T ss_dssp             CCCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCcc
Confidence                135689999999999999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        172 Y-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       172 ~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      | +|++|+|+.+|++++++|++|++++.++++|+
T Consensus       266 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~  299 (370)
T 2bg9_B          266 LSVPIIISYLMFIMILVAFSVILSVVVLNLHHRS  299 (370)
T ss_dssp             TTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            6 99999999999999999999999998888775

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=100.00  E-value=1e-48  Score=341.05  Aligned_cols=197  Identities=16%  Similarity=0.278  Sum_probs=179.7

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+   +.++||+||++++|++++.++....  .
T Consensus        56 ~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~v---p~~~IW~PDi~l~N~~d~~~~~~~~--~  130 (461)
T 4aq5_A           56 TVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL---PSDDVWLPDLVLYNNADGDFAIVHM--T  130 (461)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEE---EGGGSCCCCEEESSCCCSCCTTCSS--C
T ss_pred             EEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEe---cCCCEECCceeeecccccccccccc--c
Confidence            56899999999999 99999999999999999999999874 4444544   5699999999999999988765433  3


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                      .++|++||+|.|..|.                                                                
T Consensus       131 ~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~l~~~~~~~eW~l~~~~~~~~  210 (461)
T 4aq5_A          131 KLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH  210 (461)
T ss_dssp             EEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSGGGCCTTCSSEEEEEEEEEE
T ss_pred             ceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEeccccccHHhhhccCceEEeeeeeEEE
Confidence            4789999999998776                                                                


Q ss_pred             ------ccc-cceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705         96 ------RAY-MYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP  168 (204)
Q Consensus        96 ------~~~-~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP  168 (204)
                            +.| +|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.+|
T Consensus       211 ~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP  289 (461)
T 4aq5_A          211 WVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIP  289 (461)
T ss_dssp             ECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeehhHHHHHHHHHHHHHHHhhcC
Confidence                  124 7999999999999999999999999999999999999999998 49999999999999999999999999


Q ss_pred             CCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        169 NVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       169 ~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++| ++|++|+|+.+|++++++|++|+++|.++++|+
T Consensus       290 ~tS~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~r~  326 (461)
T 4aq5_A          290 STSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRS  326 (461)
T ss_dssp             HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCcCHHHHHHHHHHHHHHHHHHHHhhheeeeccC
Confidence            999 999999999999999999999999999999875

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=100.00  E-value=2.8e-48  Score=340.51  Aligned_cols=199  Identities=16%  Similarity=0.285  Sum_probs=180.0

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++++.+|.+||| +|++++++|++|+|+|+||+||+++++  ++...+.+.++||+||++++|++++.++.....+  
T Consensus        31 ~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~--gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n--  106 (488)
T 4aq5_E           31 TLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYE--GIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--  106 (488)
T ss_dssp             EEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTT--TCSCCCCCTTSSCCCCEECSSSCCSCCBSCSSSC--
T ss_pred             EEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcC--CceEEecCccCEECCceehhcccccccccccccc--
Confidence            57899999999999 999999999999999999999998854  3444445679999999999999998877655444  


Q ss_pred             EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705         81 VSILPDGDMLFSTRS-----------------------------------------------------------------   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~-----------------------------------------------------------------   95 (204)
                      +.|++||+|.|..|.                                                                 
T Consensus       107 v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~  186 (488)
T 4aq5_E          107 VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIR  186 (488)
T ss_dssp             CCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEE
T ss_pred             EEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEE
Confidence            569999999998766                                                                 


Q ss_pred             --------------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhh
Q psy12705         96 --------------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGI  161 (204)
Q Consensus        96 --------------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~  161 (204)
                                    +++.|+++.+++++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++.
T Consensus       187 ~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~  266 (488)
T 4aq5_E          187 HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLF  266 (488)
T ss_dssp             ECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHH
Confidence                          012488999999999999999999999999999999999999999779999999999999999999


Q ss_pred             hhhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        162 ETGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       162 ~~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      .+++.+|++|+ +|++|+|+.+|++++++|++|+++|+++++|+
T Consensus       267 ~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~r~  310 (488)
T 4aq5_E          267 LIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRT  310 (488)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEccC
Confidence            99999999995 99999999999999999999999999999885

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=100.00  E-value=3.3e-47  Score=336.02  Aligned_cols=197  Identities=17%  Similarity=0.285  Sum_probs=178.1

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.+||| +|++++++|++|+|+|+||+||++++ +++.+.+   +.++||+||++++|++++.++.....+ 
T Consensus        55 ~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~v---p~~~IW~PDi~l~N~~d~~~~~~~~~n-  130 (522)
T 4aq5_C           55 ALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL---RPELIWIPDIVLQNNNDGQYNVAYFCN-  130 (522)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEE---CGGGSCCCCEEETTTCSSCCBSCSSCC-
T ss_pred             EEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEee---ccCCEECCcEeccccccCCccccccce-
Confidence            57899999999999 99999999999999999999999884 3444444   579999999999999998877655444 


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------c-----------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------R-----------------------   96 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------~-----------------------   96 (204)
                       +.|++||+|.|..|.                                        .                       
T Consensus       131 -v~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~g  209 (522)
T 4aq5_C          131 -VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENG  209 (522)
T ss_dssp             -EEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTC
T ss_pred             -EEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecc
Confidence             569999999998766                                        0                       


Q ss_pred             --------------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHH
Q psy12705         97 --------------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTF  156 (204)
Q Consensus        97 --------------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~  156 (204)
                                          ++.|+++.+++++||+++||++++++||+++++++|++||+|++ .++|+++|+|++|++
T Consensus       210 EW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~  288 (522)
T 4aq5_C          210 EWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQ  288 (522)
T ss_dssp             SEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHH
T ss_pred             eEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHH
Confidence                                12388999999999999999999999999999999999999999 599999999999999


Q ss_pred             HHHhhhhhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        157 FQLGIETGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       157 ~~~~~~~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++++..+++.+|++|+ +|++|+|+.+|++++++|++++++|+++++|+
T Consensus       289 tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~r~  337 (522)
T 4aq5_C          289 AVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRT  337 (522)
T ss_dssp             HHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEccC
Confidence            9999999999999995 99999999999999999999999999999885

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=100.00  E-value=1.8e-47  Score=335.81  Aligned_cols=197  Identities=20%  Similarity=0.324  Sum_probs=177.6

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.+||| +|++++++|++|+|+|+||+||++++ +.+.+.+   +.++||+||++++|++++.++.....+ 
T Consensus        56 ~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v---~~~~IW~PDi~l~N~~d~~~~~~~~~n-  131 (493)
T 4aq5_B           56 RVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI---PSDDVWQPDIVLMNNNDGSFEITLHVN-  131 (493)
T ss_dssp             EEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEE---CSCSSCCCCCEESSCCCSCEESSSSSC-
T ss_pred             EEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEec---ccccCccCcEEEecccccccccccccc-
Confidence            46788999999999 99999999999999999999999773 4444444   579999999999999998887654444 


Q ss_pred             EEEEecCCeEEEEeee-------------------------------------c--------------------------
Q psy12705         80 LVSILPDGDMLFSTRS-------------------------------------R--------------------------   96 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~-------------------------------------~--------------------------   96 (204)
                       +.|++||+|.|..|.                                     .                          
T Consensus       132 -v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW  210 (493)
T 4aq5_B          132 -VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQW  210 (493)
T ss_dssp             -EEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSS
T ss_pred             -eEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccce
Confidence             679999999998776                                     0                          


Q ss_pred             --------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhh
Q psy12705         97 --------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIE  162 (204)
Q Consensus        97 --------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~  162 (204)
                                    ++.|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..
T Consensus       211 ~l~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~  289 (493)
T 4aq5_B          211 SIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLL  289 (493)
T ss_dssp             BCCCCCCEECCCTTSSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHH
T ss_pred             eeeeeeEEEEeecCCCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHH
Confidence                          114778999999999999999999999999999999999999997 89999999999999999999


Q ss_pred             hhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        163 TGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       163 ~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      +++.+|++|+ +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus       290 v~~~LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~~r~  332 (493)
T 4aq5_B          290 LADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRS  332 (493)
T ss_dssp             HHHHTTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhcCCccccCCCchHhHHHHHHHHHHHHHHHHHhheeeeccC
Confidence            9999999996 99999999999999999999999999999875

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=100.00  E-value=1.1e-45  Score=309.51  Aligned_cols=193  Identities=22%  Similarity=0.345  Sum_probs=175.2

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeecc-----ccccccccccceeeeccccceeecee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGE-----RNFIQNIWTPHIYLTNERDSLVLGLY   75 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~-----~~~~~~iW~Pdi~~~N~~~~~~~~~~   75 (204)
                      +.++++.+|.++|| +|++++++|++|+|+|+||+|++.+    .+.+.     +.+.++||+||++++|++++..    
T Consensus        15 ~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~~~~----~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----   86 (322)
T 3rqw_A           15 SVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDK----PLIVENTQIERWINNGLWVPALEFINVVGSPD----   86 (322)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCSTTS----CEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----
T ss_pred             EEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCCCCC----ceeecchhhcccccccccCCcEEEEcccCccc----
Confidence            57899999999999 9999999999999999999995432    34433     3458999999999999999775    


Q ss_pred             eeeeEEEEecCCeEEEEeee-----------------------------------------c------------------
Q psy12705         76 RRDMLVSILPDGDMLFSTRS-----------------------------------------R------------------   96 (204)
Q Consensus        76 ~~~~~~~i~~~G~V~~~~r~-----------------------------------------~------------------   96 (204)
                      .++..+++++||+|.|..|.                                         .                  
T Consensus        87 ~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~  166 (322)
T 3rqw_A           87 TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKA  166 (322)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSSCSSSSEEECCSC
T ss_pred             ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCCCCCCceEEEeee
Confidence            45678999999999998876                                         0                  


Q ss_pred             ------------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHH
Q psy12705         97 ------------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQ  158 (204)
Q Consensus        97 ------------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~  158 (204)
                                        +|+|+++.+++++||+++||++++++||+++++++|++||+| + .++|+++|+|++|++++
T Consensus       167 ~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~-~~~Rv~l~it~lL~~~~  244 (322)
T 3rqw_A          167 STHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-S-FSERLQTSFTLMLTVVA  244 (322)
T ss_dssp             EECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-S-HHHHHHHHHHHHHHHHH
T ss_pred             EEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-C-CCCcEEEEEehHHHHHH
Confidence                              345788999999999999999999999999999999999999 4 59999999999999999


Q ss_pred             HhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        159 LGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       159 ~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++..+++.+|++||+|++|+|+.+|++++++|++|+++|+++++||
T Consensus       245 ~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~~~  290 (322)
T 3rqw_A          245 YAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG  290 (322)
T ss_dssp             HHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999886

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.95  E-value=6.7e-30  Score=192.84  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=92.2

Q ss_pred             ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chh
Q psy12705         96 RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIR  174 (204)
Q Consensus        96 ~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~  174 (204)
                      ++++|+++.+++++|||++||.+++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++++|++| ++|
T Consensus        11 ~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vP   89 (164)
T 2ksr_A           11 VDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVP   89 (164)
T ss_dssp             --------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHH
T ss_pred             CCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCC
Confidence            4678999999999999999999999999999999999999999998 99999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        175 SNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       175 ~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++|+|+..|++++++|++|+++|.++++|+
T Consensus        90 lI~~y~~~~m~~v~~sll~tv~Vl~~~~r~  119 (164)
T 2ksr_A           90 LVGKYLMFTMVLVTFSIVTSVCVLNVHHRS  119 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            999999999999999999999999998875

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.95  E-value=1.1e-30  Score=192.27  Aligned_cols=107  Identities=10%  Similarity=0.038  Sum_probs=103.4

Q ss_pred             cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhH
Q psy12705         97 AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRS  175 (204)
Q Consensus        97 ~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~  175 (204)
                      +|+|+++.+++++|||++||.+++++||+++++++|++||+|||+ +||+++|+|++|++++++..+++++|++| ++|+
T Consensus        33 ~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPl  111 (140)
T 2lkg_A           33 AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPL  111 (140)
T ss_dssp             HHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHH
T ss_pred             CCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccH
Confidence            467899999999999999999999999999999999999999997 89999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        176 NDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       176 i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      +|+|+..|++++++|++|++++.++++|+
T Consensus       112 I~~y~~~~~~~v~~sll~tv~Vln~~~r~  140 (140)
T 2lkg_A          112 IGKYMLFTKEFVESSIKITEEVINTHHRS  140 (140)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence            99999999999999999999999988875

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.93  E-value=1.8e-26  Score=184.10  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+   +.++||+||++++|++++.++..   +.
T Consensus        41 ~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~---~~~~IW~PDi~l~N~~~~~~~~~---~~  114 (228)
T 2wn9_A           41 TLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRT---SAADIWTPDITAYSSTRPVQVLS---PQ  114 (228)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEE---EGGGSCCCCEEESSBSSCCEECS---CC
T ss_pred             EEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEe---cHHHccCCceecccccccccccc---cc
Confidence            56899999999999 99999999999999999999999874 4444544   46999999999999999887653   67


Q ss_pred             EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705         80 LVSILPDGDMLFSTRS----------------------------------------------------------------   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~----------------------------------------------------------------   95 (204)
                      .++|++||+|.|..|+                                                                
T Consensus       115 ~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~Sw~y~~~~i~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~  194 (228)
T 2wn9_A          115 IAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQV  194 (228)
T ss_dssp             EEEEETEEEEEECCEEEEEEECCCTTTTSTTCEEEEEEEEESSCCTTTEEEECSCSBCBCTTCCTTCSEEEEEEEEEEEE
T ss_pred             eEEEeCCeEEEEeCCEEEEEECCCCCCCCCcCcEeeEEEEeecccccEEEEEecCCccchhhceecCCEEEEEEEEEEEE
Confidence            8999999999886442                                                                


Q ss_pred             -----ccccceeEEEEEEEEechhhhhHHhhh
Q psy12705         96 -----RAYMYSSLTLTFILNRQYGFYLMDFYA  122 (204)
Q Consensus        96 -----~~~~~s~l~~~~~l~R~~~~y~~~~~~  122 (204)
                           ++|.|+++.++|++||+++||++++++
T Consensus       195 ~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil  226 (228)
T 2wn9_A          195 QHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL  226 (228)
T ss_dssp             ECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred             EeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence                 347799999999999999999999864

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.93  E-value=3e-27  Score=173.79  Aligned_cols=96  Identities=18%  Similarity=0.332  Sum_probs=92.1

Q ss_pred             EEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHH
Q psy12705        108 ILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVF  186 (204)
Q Consensus       108 ~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~  186 (204)
                      ++|||+.||.+++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++++|++| ++|++|+|+..|+++
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~   80 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF   80 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence            5799999999999999999999999999999998 89999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhheeeeeecC
Q psy12705        187 IFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       187 ~~~sli~~~~v~~l~~~~  204 (204)
                      +++|++|++++.++++|+
T Consensus        81 v~~sl~~tv~V~~~~~r~   98 (137)
T 2lly_A           81 VTLSIVITVFVLNVHHRS   98 (137)
T ss_dssp             HHHHHHHHHHHHHCCSSC
T ss_pred             HHHHhhhhhhhhhHHhcC
Confidence            999999999999999885

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=99.91  E-value=2.6e-24  Score=169.87  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM   79 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~   79 (204)
                      +.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+   +.++||+||++++|++++.++....  .
T Consensus        33 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~---~~~~iW~PDi~~~N~~~~~~~~~~~--~  107 (212)
T 2qc1_B           33 TVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI---PSEKIWRPDVVLYNNADGDFAIVKF--T  107 (212)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEE---CGGGSCCCCEEECCBTTTSSCEECC--C
T ss_pred             EEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEc---chhhccCCceeccccccccccccce--e
Confidence            57899999999999 99999999999999999999999874 4555555   4699999999999999988765433  4


Q ss_pred             EEEEecCCeEEEEeee
Q psy12705         80 LVSILPDGDMLFSTRS   95 (204)
Q Consensus        80 ~~~i~~~G~V~~~~r~   95 (204)
                      .++|++||+|.|..|+
T Consensus       108 ~~~v~~~G~V~~~~~~  123 (212)
T 2qc1_B          108 KVLLDYTGHITWTPPA  123 (212)
T ss_dssp             CEEEETTCEEEECCEE
T ss_pred             eEEEECCeeEEEEeee
Confidence            6899999999998766

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.90  E-value=5.6e-24  Score=167.78  Aligned_cols=86  Identities=20%  Similarity=0.357  Sum_probs=73.4

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++++.+|.+||| +|.+++++|++|+|+|+||+|||++++. .+.+   +.++||+||++++|++++.  ..+.. ..
T Consensus        31 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~-~l~~---~~~~iW~PDi~~~N~~~~~--~~~~~-~~  103 (211)
T 1uw6_A           31 SVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD-QVSV---PISSLWVPDLAAYNAISKP--EVLTP-QL  103 (211)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS-EEEE---EGGGSCCCCEEETTBCSCC--EECSC-CE
T ss_pred             EEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC-eEEc---cHHHccCCCEeeecccccc--cccee-eE
Confidence            57899999999999 9999999999999999999999988553 4554   4699999999999999876  33333 78


Q ss_pred             EEEecCCeEEEEee
Q psy12705         81 VSILPDGDMLFSTR   94 (204)
Q Consensus        81 ~~i~~~G~V~~~~r   94 (204)
                      ++|++||+|.|..|
T Consensus       104 ~~i~~~G~V~~~~~  117 (211)
T 1uw6_A          104 ARVVSDGEVLYMPS  117 (211)
T ss_dssp             EEEETTSEEEECCE
T ss_pred             EEEeCCceEEEeCC
Confidence            99999999988644

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.89  E-value=3.8e-23  Score=161.76  Aligned_cols=87  Identities=25%  Similarity=0.394  Sum_probs=75.3

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++++.+|.+||| +|.+++++|++|.|+|+||+||+++++   +.....+.++||+||++++|+++...    ..+..
T Consensus        19 ~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~---i~~~~~~~~~IW~PDi~l~N~~~~~~----~~~~~   91 (201)
T 3igq_A           19 NTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSG---VRVKTYEPEAIWIPEIRFVNVENARD----ADVVD   91 (201)
T ss_dssp             EEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHT---CSCEECCGGGSCCCCEEESSBSSSCE----EEEEE
T ss_pred             EEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCC---EeEecccccCcCccCEEEEccccccc----ccceE
Confidence            57899999999999 999999999999999999999997644   44445578999999999999987542    34678


Q ss_pred             EEEecCCeEEEEeee
Q psy12705         81 VSILPDGDMLFSTRS   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~   95 (204)
                      ++|++||+|.|..|+
T Consensus        92 v~v~~~G~V~~~~~~  106 (201)
T 3igq_A           92 ISVSPDGTVQYLERF  106 (201)
T ss_dssp             EEECTTCEEEEEEEE
T ss_pred             EEEeCCCcEEEecce
Confidence            999999999998876

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.89  E-value=6.7e-23  Score=160.69  Aligned_cols=88  Identities=26%  Similarity=0.403  Sum_probs=74.5

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.|.+|.+||| +|.+++++|++|+|+|+||+||+..++++.+.+   +.++||+||++++|+++...+   ..+..
T Consensus        32 ~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v---~~~~IW~PDi~l~N~~~~~~~---~~~~~  105 (205)
T 4aoe_A           32 SFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTL---PSKYIWLPHIEVYNSIGKPGI---HSDQL  105 (205)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEE---EGGGSCCCCCEETTBSSCCEE---CSCCE
T ss_pred             EEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEe---CHHHhccccEEEecccccccc---ccceE
Confidence            57899999999999 999999999999999999999974355555544   579999999999999875432   34567


Q ss_pred             EEEecCCeEEEEeee
Q psy12705         81 VSILPDGDMLFSTRS   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~   95 (204)
                      ++|++||+|.|..|.
T Consensus       106 v~v~~~G~V~~~~~~  120 (205)
T 4aoe_A          106 VRVYKDGTVTFVPQY  120 (205)
T ss_dssp             EEEETTSEEEECCEE
T ss_pred             EEEeCCcEEEEeCcE
Confidence            899999999998776

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.89  E-value=4.3e-23  Score=161.88  Aligned_cols=88  Identities=24%  Similarity=0.354  Sum_probs=73.8

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.|.+|.+||| +|.+++++|++|+|+|+||+||+.-++++.+   ..+.++||+||++++|+++...   ...+..
T Consensus        32 ~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i---~v~~~~IW~PDi~l~N~~~~~~---~~~~~~  105 (205)
T 4aod_A           32 SFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKEL---TVPIAEIWTPDIFIFDSVGAPE---IFSDKL  105 (205)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEE---EEEGGGSCCCCEEETTBSSCCE---ECSCCE
T ss_pred             EEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEe---eccHHhcCcCCEEEEcccccce---eecceE
Confidence            57899999999999 9999999999999999999999743444444   4457999999999999987543   234567


Q ss_pred             EEEecCCeEEEEeee
Q psy12705         81 VSILPDGDMLFSTRS   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~   95 (204)
                      ++|++||+|.|..|.
T Consensus       106 ~~v~~~G~V~~~~~~  120 (205)
T 4aod_A          106 ARVSQDGTVTYVPQL  120 (205)
T ss_dssp             EEEETTSEEEECCEE
T ss_pred             EEEecCCEEEEeccE
Confidence            899999999998766

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=99.89  E-value=6.7e-23  Score=160.81  Aligned_cols=86  Identities=17%  Similarity=0.290  Sum_probs=73.5

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeecccc--ceeeceeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERD--SLVLGLYRR   77 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~--~~~~~~~~~   77 (204)
                      +.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+   +.++||+||++++|+++  +.++.    
T Consensus        30 ~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~---~~~~iW~PDi~~~N~~~~~~~~~~----  102 (204)
T 3sq6_A           30 YFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSV---PISSLWVPDLAAYNAISKPEVLTP----  102 (204)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEE---EGGGSCCCCEEETTBSSCCEECSC----
T ss_pred             EEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEc---CHHHCcCCCEEeEcccccCCcccc----
Confidence            57899999999999 99999999999999999999999884 4444444   57999999999999998  65543    


Q ss_pred             eeEEEEecCCeEEEEeee
Q psy12705         78 DMLVSILPDGDMLFSTRS   95 (204)
Q Consensus        78 ~~~~~i~~~G~V~~~~r~   95 (204)
                       ..++|++||+|.|..|+
T Consensus       103 -~~v~v~~~G~V~~~~~~  119 (204)
T 3sq6_A          103 -QLALVNSSGHVQYLPSI  119 (204)
T ss_dssp             -CEEEEETTSEEEECCEE
T ss_pred             -cEEEEEeCCEEEEecCe
Confidence             16899999999997664

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.88  E-value=8.4e-23  Score=162.89  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             eeeEEEEEecCCCc-----ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeecee
Q psy12705          2 SATSKLVDIGNLSF-----QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLY   75 (204)
Q Consensus         2 s~~~~l~~I~~vde-----~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~   75 (204)
                      +.++++.+|.+|||     +|++++++|++|+|+|+||+|||+++ +++.+.+   +.++||+||++++|++++.++...
T Consensus        37 ~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l---~~~~IW~PDi~l~N~~~~~~~~~~  113 (230)
T 4afh_A           37 KFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEI---SPDEIWTPDIKLFNSVDLDMTLDR  113 (230)
T ss_dssp             EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEE---CGGGSCCCCEEETTCSSSSCEECT
T ss_pred             EEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEe---ccCCEECCcEEEEecccccccccc
Confidence            46789999999988     57899999999999999999999884 4444544   569999999999999998776432


Q ss_pred             eeeeEEEEecCCeEEEEeee------------------------------------------------------------
Q psy12705         76 RRDMLVSILPDGDMLFSTRS------------------------------------------------------------   95 (204)
Q Consensus        76 ~~~~~~~i~~~G~V~~~~r~------------------------------------------------------------   95 (204)
                        +..++|++||+|.|..|+                                                            
T Consensus       114 --~~~v~v~~~G~V~~~~~~~~~s~C~mPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~~~~~n~W~l~~~~~~~~~  191 (230)
T 4afh_A          114 --TTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQE  191 (230)
T ss_dssp             --TSCEEEETTSEEEECCEEEEEEEEEEETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBCTTCCCCCCEEEEEEEEEE
T ss_pred             --cceEEEEcCCEEEEecCEEEEEECCCCCCcccCCEeeccccccCceEEEEECCCCcccceeeecCcEEEEEEEEEEEE
Confidence              345889999999987654                                                            


Q ss_pred             -----ccccceeEEEEEEEEechhhhhHHh
Q psy12705         96 -----RAYMYSSLTLTFILNRQYGFYLMDF  120 (204)
Q Consensus        96 -----~~~~~s~l~~~~~l~R~~~~y~~~~  120 (204)
                           +++.|+.+.|++++|||+.||+.+-
T Consensus       192 ~~y~cc~~~y~~i~f~~~irRrpl~~~~~~  221 (230)
T 4afh_A          192 VVYPCCESAYVEMKYLLALRSENGNSTYSR  221 (230)
T ss_dssp             ECCTTCSSCEEEEEEEEEEECC--------
T ss_pred             EecCCCCCCccEEEEEEEEEEeechhhccc
Confidence                 1356889999999999999998763

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.87  E-value=6.4e-22  Score=155.11  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=75.4

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCc-CccCCCCcceeeeccccccccccccceeeecc-ccceeeceeeee
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRL-EYRHYAPHITEMVGERNFIQNIWTPHIYLTNE-RDSLVLGLYRRD   78 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL-~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~-~~~~~~~~~~~~   78 (204)
                      +.++++.+|.++|| +|.+++++|++|+|+|+|| +|||++ +++.+.+   +.++||+||++++|+ +++.++..    
T Consensus        28 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~-~i~~~~~---~~~~iW~PDi~~~N~~~~~~~~~~----   99 (203)
T 2bj0_A           28 SLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS-SLDQVSL---PVSKMWTPDLSFYNAIAAPELLSA----   99 (203)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS-SCSEEEE---EGGGSCCCCEEETTCSSCCEECSC----
T ss_pred             EEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC-CceEEEE---chhhccCCCccccccccccccccc----
Confidence            57899999999999 9999999999999999999 999987 6555554   479999999999999 99887764    


Q ss_pred             eEEEEecCCeEEEEeee
Q psy12705         79 MLVSILPDGDMLFSTRS   95 (204)
Q Consensus        79 ~~~~i~~~G~V~~~~r~   95 (204)
                      ..++|++||+|.|..|+
T Consensus       100 ~~v~i~~~G~V~~~~~~  116 (203)
T 2bj0_A          100 DRVVVSKDGSVIYVPSQ  116 (203)
T ss_dssp             CEEEEETTSEEEECCEE
T ss_pred             eEEEEeCCcEEEEecce
Confidence            56899999999987554

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.83  E-value=2.8e-23  Score=164.64  Aligned_cols=91  Identities=13%  Similarity=0.254  Sum_probs=87.9

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||.+++++||+++++++|++||+|+|+ |||+++|+|++|++++++..+++.+|++| ++|++|+|+..|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999998 99999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++|+
T Consensus        80 ~~tv~vln~~~r~   92 (227)
T 1oed_A           80 IITVVVINTHHRS   92 (227)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhccC
Confidence            9999999888764

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.82  E-value=5.4e-23  Score=165.24  Aligned_cols=91  Identities=18%  Similarity=0.268  Sum_probs=88.1

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++.+|++| ++|++|+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999998 89999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++|+
T Consensus        80 ~~tv~Vln~~~r~   92 (250)
T 1oed_B           80 ILSVVVLNLHHRS   92 (250)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHhheeeeeccC
Confidence            9999999988775

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.82  E-value=6.6e-23  Score=165.58  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|+|+.|||+++|+|++|++++++..+++.+|++| ++|++|+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl   80 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999996699999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++|+
T Consensus        81 ~~tv~vln~~~r~   93 (260)
T 1oed_E           81 MNCVIVLNVSLRT   93 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHhheeeeeccC
Confidence            9999998888764

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.82  E-value=1.2e-22  Score=164.00  Aligned_cols=91  Identities=13%  Similarity=0.240  Sum_probs=87.9

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|+|+ |||+++|+|++|++++|+..+++.+|++| ++|++|+|+..|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~   79 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999996 89999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++|+
T Consensus        80 ~~tv~vl~~~~r~   92 (260)
T 1oed_C           80 VNCGIVLNFHFRT   92 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHheeeeeccC
Confidence            9999999998874

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=99.65  E-value=9e-18  Score=109.58  Aligned_cols=62  Identities=39%  Similarity=0.687  Sum_probs=58.5

Q ss_pred             CceEEEcchhHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705        143 PGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG  204 (204)
Q Consensus       143 ~~R~~l~vt~lL~~~~~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~  204 (204)
                      ++|+++|+|++|+++.+....++++|++||++++|+|+.+|++|+|++++|+++|+|+.||.
T Consensus         2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~   63 (76)
T 1vry_A            2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67999999999999999999999999999999999999999999999999999999998863

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=95.81  E-value=0.00044  Score=35.93  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=25.2

Q ss_pred             CceEEEcchhHHHHHHHhhhhhcCCCC
Q psy12705        143 PGRTILGASTMLTFFQLGIETGSSLPN  169 (204)
Q Consensus       143 ~~R~~l~vt~lL~~~~~~~~~~~~lP~  169 (204)
                      ++|+++|++++|++..+....+.++|+
T Consensus         2 paRv~LGittvLt~tt~~~~~~~~lPk   28 (28)
T 1mot_A            2 PARVGLGITTVLTMTTQSSGSRASLPK   28 (28)
T ss_dssp             CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred             CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence            689999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	3e-14
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	4e-13
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	4e-12
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	6e-12

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
           FY+++  AP +L+  +  + +++   A   +  L  S +L            +P  S  +
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                +         L +     V  +    
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCVIVLNVSLRT 93

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 63.2 bits (153), Expect = 4e-13
 Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
           +++++   P +L   ++ + F++  D+   +  L  S +L+     +     +P+ S  +
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                +     +F+  S+     V       
Sbjct: 62  PLIGKYMLFTMIFVISSIIITVVVINTHHRS 92

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 60.9 bits (147), Expect = 4e-12
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
           FY++    P IL+  ++ + F++ PDA   +  L  S +L      +     +P  S  +
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                +     + +  S+     V  +    
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNLHHRS 92

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
           FY+++F  P +L+  ++ ++F++  ++   +     S +L      + T   LP  +  +
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
                +       +   +     V       
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRT 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.88
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.87
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.86
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.85
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.83

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.88  E-value=1.6e-25  Score=179.68  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||++++++||++||+|||+.|||+++|+|+||++++++..+++.+|++| ++|++|+|+.+|++++++++
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl   80 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999899999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|+++++||
T Consensus        81 ~~t~iVl~~~~~~   93 (260)
T d1oede_          81 MNCVIVLNVSLRT   93 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHheeeEEccC
Confidence            9999999998875

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.87  E-value=1.2e-22  Score=157.89  Aligned_cols=87  Identities=20%  Similarity=0.353  Sum_probs=72.5

Q ss_pred             eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705          2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML   80 (204)
Q Consensus         2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~   80 (204)
                      +.++.|.+|.++|| +|.+++++|++|+|+|+||+|||++++ ..+.   .+.++||+||++++|+++....   ..+..
T Consensus        31 ~~~l~l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~-~~~~---v~~~~iW~PDi~l~n~~~~~~~---~~~~~  103 (208)
T d1uw6a_          31 SVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSP-DQVS---VPISSLWVPDLAAYNAISKPEV---LTPQL  103 (208)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSC-SEEE---EEGGGSCCCCEEETTBCSCCEE---CSCCE
T ss_pred             EEEEEEEeEeeecccCCEEEEEEEEEEEEECCccccccccCC-ceec---cchhccccccEEEEEEcccccc---ccceE
Confidence            57899999999999 999999999999999999999998754 1232   3568999999999999876532   23456


Q ss_pred             EEEecCCeEEEEeee
Q psy12705         81 VSILPDGDMLFSTRS   95 (204)
Q Consensus        81 ~~i~~~G~V~~~~r~   95 (204)
                      ++|++||+|.|..+.
T Consensus       104 ~~v~~~G~V~~~~~~  118 (208)
T d1uw6a_         104 ARVVSDGEVLYMPSI  118 (208)
T ss_dssp             EEEETTSEEEECCEE
T ss_pred             EEEEeCCcEEEEecE
Confidence            789999999997665

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=1.7e-24  Score=170.61  Aligned_cols=91  Identities=13%  Similarity=0.254  Sum_probs=88.4

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|+|+ |||+++|+|++|++++++..+++++|++| ++|++|+|+..|++++++++
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl   79 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence            68999999999999999999999999998 99999999999999999999999999999 89999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++|+
T Consensus        80 i~tiiV~~l~~~~   92 (227)
T d1oeda_          80 IITVVVINTHHRS   92 (227)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHhheeccC
Confidence            9999999998864

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.85  E-value=2.2e-24  Score=172.70  Aligned_cols=91  Identities=13%  Similarity=0.240  Sum_probs=88.8

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|||+ |||+++|+|++|++++|+..+++.+|++| ++|++|+|+.+|++++++++
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~   79 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999998 89999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++||
T Consensus        80 ~~t~~Vl~~~~~~   92 (260)
T d1oedc_          80 VNCGIVLNFHFRT   92 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHhheeeeecc
Confidence            9999999999876

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.83  E-value=1.2e-23  Score=167.71  Aligned_cols=91  Identities=18%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705        113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL  191 (204)
Q Consensus       113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl  191 (204)
                      |.||++++++||+++++++|++||+|+|+ |||+++|+|++|++++++..+++.+|++| ++|++|.|+.+|++++++++
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~   79 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999998 99999999999999999999999999998 99999999999999999999


Q ss_pred             HHHhheeeeeecC
Q psy12705        192 AEFAFVNTIWRYG  204 (204)
Q Consensus       192 i~~~~v~~l~~~~  204 (204)
                      +++++|.++++||
T Consensus        80 ~~~~~v~~~~~~~   92 (250)
T d1oedb_          80 ILSVVVLNLHHRS   92 (250)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHhheeeeccC
Confidence            9999999999886