Psyllid ID: psy12738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEHHHccHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
viafdelkvdyknpidqcnslnplvlpEYLAHAIFnhnyvgnlRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLygyrnrpvmsgyglydptsimnadtlNKCQREGWIKLAFYLLSFFYYLYgsefsylsffKDLTVIAFDelkvdyknpidqcnslnplvlpeYLAHAIFK
Flexible Loop (DISEMBL)
viafdelkvdyknpidqcnsLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPidqcnslnplvlpEYLAHAIFK
Low Complexity Region (SEG)
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAfyllsffyylygyRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAfyllsffyylygsefsylsffKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Disordered region (IsUnstruct)
***FDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF*
Disordered Region (DISOPRED)
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Disordered Region (DISEMBL)
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Disordered Region (DISPRO)
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q5RDB5	144	Protein cornichon homolog	yes	N/A	0.670	0.805	0.549	3e-34
O35372	144	Protein cornichon homolog	yes	N/A	0.670	0.805	0.549	3e-34
O95406	144	Protein cornichon homolog	yes	N/A	0.670	0.805	0.549	3e-34
Q5BIN6	144	Protein cornichon homolog	yes	N/A	0.670	0.805	0.549	3e-34
P49858	144	Protein cornichon OS=Dros	yes	N/A	0.670	0.805	0.534	8e-32
P52159	144	Protein cornichon OS=Dros	N/A	N/A	0.670	0.805	0.526	6e-29
Q22361	145	Uncharacterized protein T	yes	N/A	0.670	0.8	0.488	6e-27
Q5BJU5	160	Protein cornichon homolog	no	N/A	0.676	0.731	0.405	4e-23
O35089	160	Protein cornichon homolog	no	N/A	0.676	0.731	0.405	4e-23
Q6PI25	160	Protein cornichon homolog	no	N/A	0.676	0.731	0.405	4e-23

>sp|Q5RDB5|CNIH_PONAB Protein cornichon homolog OS=Pongo abelii GN=CNIH PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLL+FFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Involved in the selective transport and maturation of TGF-alpha family proteins.
Pongo abelii (taxid: 9601)

>sp|O35372|CNIH_MOUSE Protein cornichon homolog OS=Mus musculus GN=Cnih PE=2 SV=2

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLL+FFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Involved in the selective transport and maturation of TGF-alpha family proteins.

Mus musculus (taxid: 10090)

>sp|O95406|CNIH_HUMAN Protein cornichon homolog OS=Homo sapiens GN=CNIH PE=1 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLL+FFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Involved in the selective transport and maturation of TGF-alpha family proteins.

Homo sapiens (taxid: 9606)

>sp|Q5BIN6|CNIH_BOVIN Protein cornichon homolog OS=Bos taurus GN=CNIH PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLL+FFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Involved in the selective transport and maturation of TGF-alpha family proteins.

Bos taurus (taxid: 9913)

>sp|P49858|CNI_DROME Protein cornichon OS=Drosophila melanogaster GN=cni PE=1 SV=1

 Score =  136 bits (342), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 85/131 (64%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLVLPEYL H   N                 ++    W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHIFLNL---------------LFLFCGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L   +    Y+++ Y+NRPVMSG GLYDPT+++  DTL +  REGWIKLA YL+SFFY
Sbjct: 73  FSLCINIPLIAYHIWRYKNRPVMSGPGLYDPTTVLKTDTLYRNMREGWIKLAVYLISFFY 132

Query: 121 YLYGSEFSYLS 131
           Y+YG  +S +S
Sbjct: 133 YIYGMVYSLIS 143

Acts as cargo receptor necessary for the transportation of gurken (grk) to a transitional endoplasmic reticulum (tER) site and promotes its incorporation into coat protein complex II (COPII) vesicles. Associated with gurken, produces a signal received by torpedo resulting in a signaling pathway that first establishes posterior follicle cell fates and normal localization of the anterior and posterior determinants, later they act in a signaling event inducing dorsal follicle cell fates and regulating the dorsal-ventral pattern of egg and embryo.

Drosophila melanogaster (taxid: 7227)

>sp|P52159|CNI_DROVI Protein cornichon OS=Drosophila virilis GN=cni PE=3 SV=2

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 86/131 (65%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLVLPEYL H   N                 ++    W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHLFLNL---------------LFLFCGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L   +    Y+++ Y+NRP+MSG GLYDPT+++  DTL++  REGWIKLA YL+SFFY
Sbjct: 73  YSLCLNIPLIAYHIWRYKNRPLMSGPGLYDPTTVLKTDTLSRNLREGWIKLAVYLISFFY 132

Query: 121 YLYGSEFSYLS 131
           Y+YG  +S +S
Sbjct: 133 YIYGMVYSLIS 143

Acts as cargo receptor necessary for the transportation of gurken (grk) to a transitional endoplasmic reticulum (tER) site and promotes its incorporation into coat protein complex II (COPII) vesicles. Associated with gurken, produces a signal received by torpedo resulting in a signaling pathway that first establishes posterior follicle cell fates and normal localization of the anterior and posterior determinants, later they act in a signaling event inducing dorsal follicle cell fates and regulating the dorsal-ventral pattern of egg and embryo.

Drosophila virilis (taxid: 7244)

>sp|Q22361|YFR3_CAEEL Uncharacterized protein T09E8.3 OS=Caenorhabditis elegans GN=T09E8.3 PE=3 SV=2

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VI  DEL+ DYKNPI+QC +LN L+LPEY+ H  F         T   +F  Q IS    
Sbjct: 28  VICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTF---------TVLFIFSWQLISILAN 78

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + LAFY      ++Y Y  RPVMSG G+YDPT+I+N  TL+   R  WIKLAFYL+SFFY
Sbjct: 79  LPLAFY------HIYTYAKRPVMSGPGIYDPTTILNRSTLSSTLRISWIKLAFYLVSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLY   ++ ++
Sbjct: 133 YLYAMIYTLVT 143

Caenorhabditis elegans (taxid: 6239)

>sp|Q5BJU5|CNIH2_RAT Protein cornichon homolog 2 OS=Rattus norvegicus GN=Cnih2 PE=1 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 77/148 (52%), Gaps = 31/148 (20%)

Query: 1   VIAFDELKVDYKNPIDQ----------------CNSLNPLVLPEYLAHAIFNHNYVGNLR 44
           +IAFDEL+ D+KNPIDQ                C  L  LV+PEY  H +F         
Sbjct: 28  IIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLF--------- 78

Query: 45  TYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQ 104
                    ++    W+ L   +   FY+L+ Y +RP      +YD  SIMNAD LN CQ
Sbjct: 79  ------CLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQ 132

Query: 105 REGWIKLAFYLLSFFYYLYGSEFSYLSF 132
           +E W KLAFYLLSFFYYLY   ++ +SF
Sbjct: 133 KESWCKLAFYLLSFFYYLYSMVYTLVSF 160

Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by regulating their rates of activation, deactivation and desensitization. Blocks CACNG8-mediated resensitization of AMPA receptors.

Rattus norvegicus (taxid: 10116)

>sp|O35089|CNIH2_MOUSE Protein cornichon homolog 2 OS=Mus musculus GN=Cnih2 PE=1 SV=2

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 77/148 (52%), Gaps = 31/148 (20%)

Query: 1   VIAFDELKVDYKNPIDQ----------------CNSLNPLVLPEYLAHAIFNHNYVGNLR 44
           +IAFDEL+ D+KNPIDQ                C  L  LV+PEY  H +F         
Sbjct: 28  IIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLF--------- 78

Query: 45  TYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQ 104
                    ++    W+ L   +   FY+L+ Y +RP      +YD  SIMNAD LN CQ
Sbjct: 79  ------CLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQ 132

Query: 105 REGWIKLAFYLLSFFYYLYGSEFSYLSF 132
           +E W KLAFYLLSFFYYLY   ++ +SF
Sbjct: 133 KESWCKLAFYLLSFFYYLYSMVYTLVSF 160

Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by regulating their rates of activation, deactivation and desensitization. Blocks CACNG8-mediated resensitization of AMPA receptors.

Mus musculus (taxid: 10090)

>sp|Q6PI25|CNIH2_HUMAN Protein cornichon homolog 2 OS=Homo sapiens GN=CNIH2 PE=1 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 77/148 (52%), Gaps = 31/148 (20%)

Query: 1   VIAFDELKVDYKNPIDQ----------------CNSLNPLVLPEYLAHAIFNHNYVGNLR 44
           +IAFDEL+ D+KNPIDQ                C  L  LV+PEY  H +F         
Sbjct: 28  IIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLF--------- 78

Query: 45  TYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQ 104
                    ++    W+ L   +   FY+L+ Y +RP      +YD  SIMNAD LN CQ
Sbjct: 79  ------CLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQ 132

Query: 105 REGWIKLAFYLLSFFYYLYGSEFSYLSF 132
           +E W KLAFYLLSFFYYLY   ++ +SF
Sbjct: 133 KESWCKLAFYLLSFFYYLYSMVYTLVSF 160

Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by regulating their rates of activation, deactivation and desensitization. Blocks CACNG8-mediated resensitization of AMPA receptors.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
170047545	144	cornichon protein [Culex quinquefasciatu	0.670	0.805	0.610	9e-36
91083045	144	PREDICTED: similar to cornichon protein,	0.670	0.805	0.587	2e-35
157115766	144	cornichon protein, putative [Aedes aegyp	0.670	0.805	0.610	2e-35
270008159	148	cornichon [Tribolium castaneum]	0.630	0.736	0.612	3e-35
321456896	144	hypothetical protein DAPPUDRAFT_189492 [	0.670	0.805	0.587	2e-34
56118470	144	cornichon homolog [Xenopus (Silurana) tr	0.670	0.805	0.564	4e-33
395504208	320	PREDICTED: uncharacterized protein LOC10	0.630	0.340	0.588	5e-33
387015280	144	Protein cornichon-like protein [Crotalus	0.630	0.756	0.580	6e-33
74136747	144	protein cornichon homolog [Gallus gallus	0.670	0.805	0.557	8e-33
327286295	144	PREDICTED: protein cornichon homolog iso	0.670	0.805	0.557	8e-33

>gi|170047545|ref|XP_001851278.1| cornichon protein [Culex quinquefasciatus] gi|167869951|gb|EDS33334.1| cornichon protein [Culex quinquefasciatus]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 90/131 (68%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLVLPEY  H +FN                 ++    W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVLPEYALHVLFNL---------------LFLFAGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             LA  +    Y+++ Y+NRPVMSG GLYDPTSIMNAD L KCQREGWIKLA YLLSFFY
Sbjct: 73  FSLAINIPLIAYHIWRYKNRPVMSGPGLYDPTSIMNADVLAKCQREGWIKLAVYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +S +S
Sbjct: 133 YLYGMIYSLIS 143

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083045|ref|XP_974854.1| PREDICTED: similar to cornichon protein, putative [Tribolium castaneum]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 88/131 (67%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLV+PEYL H  FN                 +++   W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVVPEYLLHIFFN---------------VLFVAAGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L   +    Y++  YR RPVMSG G+YDPTSIMNAD L +CQREGWIKLAFYLLSFFY
Sbjct: 73  FSLLLNIPLIIYHINRYRTRPVMSGLGIYDPTSIMNADVLTRCQREGWIKLAFYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYCLIS 143

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115766|ref|XP_001652686.1| cornichon protein, putative [Aedes aegypti] gi|108876754|gb|EAT40979.1| AAEL007332-PA [Aedes aegypti]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 89/131 (67%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLVLPEY  H +FN                 ++    W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVLPEYALHVLFNL---------------LFLFAGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             LA  +    Y+++ Y NRPVMSG GLYDPTSIMNAD L KCQREGWIKLA YLLSFFY
Sbjct: 73  FSLAINIPLIAYHVWRYSNRPVMSGPGLYDPTSIMNADVLAKCQREGWIKLAVYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +S +S
Sbjct: 133 YLYGMIYSLIS 143

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008159|gb|EFA04607.1| cornichon [Tribolium castaneum]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 85/124 (68%), Gaps = 15/124 (12%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VIAFDELK DYKNPIDQCNSLNPLV+PEYL H  FN                 +++   W
Sbjct: 28  VIAFDELKTDYKNPIDQCNSLNPLVVPEYLLHIFFN---------------VLFVAAGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L   +    Y++  YR RPVMSG G+YDPTSIMNAD L +CQREGWIKLAFYLLSFFY
Sbjct: 73  FSLLLNIPLIIYHINRYRTRPVMSGLGIYDPTSIMNADVLTRCQREGWIKLAFYLLSFFY 132

Query: 121 YLYG 124
           YLYG
Sbjct: 133 YLYG 136

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321456896|gb|EFX67993.1| hypothetical protein DAPPUDRAFT_189492 [Daphnia pulex]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 89/131 (67%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQC+SLNPLVLPEY  H +FN                 ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCSSLNPLVLPEYAIHILFN---------------LMFLFAGEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L F +    Y+++ Y NRPVMSG GLYDPT+IMN D LNKCQREGWIKLAFYLLSFF+
Sbjct: 73  FTLMFNIPLIAYHIHRYLNRPVMSGAGLYDPTNIMNQDVLNKCQREGWIKLAFYLLSFFF 132

Query: 121 YLYGSEFSYLS 131
           YLYG   S +S
Sbjct: 133 YLYGMIRSLIS 143

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56118470|ref|NP_001008067.1| cornichon homolog [Xenopus (Silurana) tropicalis] gi|51703416|gb|AAH80958.1| cornichon homolog (Drosophila) [Xenopus (Silurana) tropicalis] gi|89269111|emb|CAJ81847.1| cornichon homolog (Drosophila) [Xenopus (Silurana) tropicalis]

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  Y+    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMYLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLLSFFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395504208|ref|XP_003756448.1| PREDICTED: uncharacterized protein LOC100931968 [Sarcophilus harrisii]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 86/124 (69%), Gaps = 15/124 (12%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct: 204 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 248

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLLSFFY
Sbjct: 249 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLSFFY 308

Query: 121 YLYG 124
           YLYG
Sbjct: 309 YLYG 312

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387015280|gb|AFJ49759.1| Protein cornichon-like protein [Crotalus adamanteus]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 85/124 (68%), Gaps = 15/124 (12%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCATEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L+  +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLLSFFY
Sbjct: 73  LTLSLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLSFFY 132

Query: 121 YLYG 124
           YLYG
Sbjct: 133 YLYG 136

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74136747|ref|NP_001028178.1| protein cornichon homolog [Gallus gallus] gi|350537343|ref|NP_001232045.1| cornichon homolog [Taeniopygia guttata] gi|334310401|ref|XP_001370375.2| PREDICTED: protein cornichon homolog [Monodelphis domestica] gi|73759939|dbj|BAE20187.1| cornichon [Gallus gallus] gi|197127134|gb|ACH43632.1| putative cornichon-like [Taeniopygia guttata]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCAAEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLLSFFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327286295|ref|XP_003227866.1| PREDICTED: protein cornichon homolog isoform 1 [Anolis carolinensis]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 87/131 (66%), Gaps = 15/131 (11%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA F                  ++    W
Sbjct: 28  IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF---------------CVMFLCATEW 72

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
           + L   +    Y+++ Y +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLAFYLLSFFY
Sbjct: 73  LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLSFFY 132

Query: 121 YLYGSEFSYLS 131
           YLYG  +  +S
Sbjct: 133 YLYGMIYVLVS 143

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|Q401B9	144	CNI "Uncharacterized protein"	0.560	0.673	0.526	1.4e-23
UNIPROTKB|Q5BIN6	144	CNIH "Protein cornichon homolo	0.560	0.673	0.526	1.4e-23
UNIPROTKB|J9NX33	144	CNIH "Uncharacterized protein"	0.560	0.673	0.526	1.4e-23
UNIPROTKB|G3V3B2	136	CNIH "Protein cornichon homolo	0.560	0.713	0.526	1.4e-23
UNIPROTKB|O95406	144	CNIH "Protein cornichon homolo	0.560	0.673	0.526	1.4e-23
UNIPROTKB|I3L613	143	CNIH "Uncharacterized protein"	0.560	0.678	0.526	1.4e-23
MGI|MGI:1277202	144	Cnih "cornichon homolog (Droso	0.560	0.673	0.526	1.4e-23
RGD|1312030	144	Cnih "cornichon homolog (Droso	0.560	0.673	0.526	1.4e-23
FB|FBgn0000339	144	cni "cornichon" [Drosophila me	0.560	0.673	0.544	1.3e-22
ZFIN|ZDB-GENE-040426-1944	144	cnih "cornichon homolog (Droso	0.560	0.673	0.5	1.6e-22

UNIPROTKB|Q401B9 CNI "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q5BIN6 CNIH "Protein cornichon homolog" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|J9NX33 CNIH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|G3V3B2 CNIH "Protein cornichon homolog" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|O95406 CNIH "Protein cornichon homolog" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006955 "immune response" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

UNIPROTKB|I3L613 CNIH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    27 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 71

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    72 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 123

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1277202 Cnih "cornichon homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

RGD|1312030 Cnih "cornichon homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/112 (52%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL HA            +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHA------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               +RPVMSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

FB|FBgn0000339 cni "cornichon" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 61/112 (54%), Positives = 68/112 (60%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             VIAFDELK DYKNPIDQCNSLNPLVLPEYL H IF       L   F +F  +      W
Sbjct:    28 VIAFDELKTDYKNPIDQCNSLNPLVLPEYLLH-IF-------LNLLF-LFCGE------W 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
               L              +NRPVMSG GLYDPT+++  DTL +  REGWIKLA
Sbjct:    73 FSLCINIPLIAYHIWRYKNRPVMSGPGLYDPTTVLKTDTLYRNMREGWIKLA 124

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0045450 "bicoid mRNA localization" evidence=IMP

GO:0008298 "intracellular mRNA localization" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0007350 "blastoderm segmentation" evidence=IMP

GO:0030722 "establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=NAS

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=NAS

GO:0008069 "dorsal/ventral axis specification, ovarian follicular epithelium" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0009950 "dorsal/ventral axis specification" evidence=NAS

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008314 "gurken receptor signaling pathway" evidence=TAS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=IMP

ZFIN|ZDB-GENE-040426-1944 cnih "cornichon homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/112 (50%), Positives = 66/112 (58%)

Query:     1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
             +IAFDELK DYKNPIDQCN+LNPLVLPEYL H             +F V    ++    W
Sbjct:    28 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHV------------FFCVM---FLCAAEW 72

Query:    61 IKLAXXXXXXXXXXXXXRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLA 112
             + L               + P+MSG GLYDPT+IMNAD L  CQ+EGW KLA
Sbjct:    73 LTLGLNVPLLAYHIWRYMSHPIMSGPGLYDPTTIMNADILAYCQKEGWCKLA 124

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RDB5	CNIH_PONAB	No assigned EC number	0.5496	0.6705	0.8055	yes	N/A
Q22361	YFR3_CAEEL	No assigned EC number	0.4885	0.6705	0.8	yes	N/A
Q5BIN6	CNIH_BOVIN	No assigned EC number	0.5496	0.6705	0.8055	yes	N/A
P49858	CNI_DROME	No assigned EC number	0.5343	0.6705	0.8055	yes	N/A
O95406	CNIH_HUMAN	No assigned EC number	0.5496	0.6705	0.8055	yes	N/A
O35372	CNIH_MOUSE	No assigned EC number	0.5496	0.6705	0.8055	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
pfam03311	128	pfam03311, Cornichon, Cornichon protein	8e-26
pfam03311	128	pfam03311, Cornichon, Cornichon protein	2e-10

>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein

 Score = 95.4 bits (238), Expect = 8e-26
 Identities = 52/124 (41%), Positives = 66/124 (53%), Gaps = 22/124 (17%)

Query: 1   VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGW 60
           VI   +L+ DY NPID C+ LNPLVLPEY+ H      ++  L  ++ VF+         
Sbjct: 27  VIMLSDLEADYINPIDLCSRLNPLVLPEYILHGFLCLLFL--LTGHWFVFL--------- 75

Query: 61  IKLAFYLLSFFYYLYGYRNRPVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFY 120
             L   LL++  YLY            L D T I    TL+K +RE +IKLAFYLL FFY
Sbjct: 76  --LNLPLLAYNVYLY-------YKRTHLLDATEIFR--TLSKHKRESFIKLAFYLLLFFY 124

Query: 121 YLYG 124
           YLY 
Sbjct: 125 YLYR 128

Length = 128

>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 107 GWIKLAFYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEY 166
            +     Y+L+            L F +   VI   +L+ DY NPID C+ LNPLVLPEY
Sbjct: 2   AFEFWLLYILALLINAA------LLFLQVYFVIMLSDLEADYINPIDLCSRLNPLVLPEY 55

Query: 167 LAHAIF 172
           + H   
Sbjct: 56  ILHGFL 61

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG2729|consensus	137		100.0
PLN00174	160	predicted protein; Provisional	100.0
PF03311	128	Cornichon: Cornichon protein; InterPro: IPR003377	100.0
KOG2729|consensus	137		99.77
PF03311	128	Cornichon: Cornichon protein; InterPro: IPR003377	99.62
PLN00174	160	predicted protein; Provisional	99.42

>KOG2729|consensus

Probab=100.00  E-value=4.1e-47  Score=299.76  Aligned_cols=110  Identities=48%  Similarity=0.862  Sum_probs=107.4

Q ss_pred             CeeecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcc
Q psy12738          1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNR   80 (173)
Q Consensus         1 ii~~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~   80 (173)
                      +||+||||+||+||+|+|||+|++|+||++.|+++|++               ++++|||+++++|+|+++||+++|.+|
T Consensus        28 vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGl---------------fLl~g~W~~fllnlP~l~y~~~~y~~r   92 (137)
T KOG2729|consen   28 VICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLL---------------FLLTGHWFMFLLNLPLLAYNAWLYMKR   92 (137)
T ss_pred             HHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHH---------------HHHHHHHHHHHHccHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             cCCCCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12738         81 PVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYGSEFSYLSF  132 (173)
Q Consensus        81 ~~~~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly~LI~alL~f  132 (173)
                      |     |+||||||||  +|++||||+|+|+|||+++||+++|+||.+++++
T Consensus        93 ~-----~l~D~TeI~n--~L~~~~k~~~~KL~fyll~FF~yly~mI~slv~~  137 (137)
T KOG2729|consen   93 P-----HLYDPTEIFN--TLSSEKKERWIKLAFYLLSFFYYLYWMIYSLVSS  137 (137)
T ss_pred             C-----cccCHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9     9999999999  9999999999999999999999999999998753

>PLN00174 predicted protein; Provisional

Probab=100.00  E-value=6.2e-43  Score=281.76  Aligned_cols=103  Identities=25%  Similarity=0.460  Sum_probs=101.0

Q ss_pred             ecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcccCC
Q psy12738          4 FDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNRPVM   83 (173)
Q Consensus         4 ~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~~~~   83 (173)
                      +||||+||+||+|+|||+|++|+||+++|+++|++               ++++|+|+++++|+|+++||+++|.+|+  
T Consensus        36 lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lL---------------fLltG~W~~fLLNlPll~Yhv~~y~~r~--   98 (160)
T PLN00174         36 LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIA---------------FVIRGWWIVGFLNFPFIFYNFAQWYEGK--   98 (160)
T ss_pred             HHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence            79999999999999999999999999999999999               9999999999999999999999999998  


Q ss_pred             CCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy12738         84 SGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLY-GSEFS  128 (173)
Q Consensus        84 ~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly-~LI~a  128 (173)
                         |++|||||||  +|++||||||+|+|||+++||+++| ||+.+
T Consensus        99 ---hL~D~TeIfn--~L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~  139 (160)
T PLN00174         99 ---HQLDSAQIFN--VLSRELRVIKAKSAFFIIIVIYTIWEWMIWV  139 (160)
T ss_pred             ---CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               9999999999  6999999999999999999999999 99976

>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling

Probab=100.00  E-value=3.3e-40  Score=257.19  Aligned_cols=102  Identities=47%  Similarity=0.908  Sum_probs=99.4

Q ss_pred             CeeecccccccCChHHhhhcCCCchhhHHHHHHHHhhhhcCccccccccccccceechhHHHHHHHHHHHHHHHHhhhcc
Q psy12738          1 VIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIFNHNYVGNLRTYFTVFIPQYISTEGWIKLAFYLLSFFYYLYGYRNR   80 (173)
Q Consensus         1 ii~~~dLe~D~~NPid~c~~lN~lv~pE~~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~nlp~~~y~~~~y~~~   80 (173)
                      +|++||||+||+||+|+|+|+||+|+||+++|++++++               ++++|+|+++++|+|+++||+++|.+|
T Consensus        27 ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l---------------~ll~g~w~~~llnlPl~~y~~~~~~~~   91 (128)
T PF03311_consen   27 IICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLL---------------FLLTGHWFLFLLNLPLLAYHIYRYFRR   91 (128)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999999               999999999999999999999999999


Q ss_pred             cCCCCcceeccceeecHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12738         81 PVMSGYGLYDPTSIMNADTLNKCQREGWIKLAFYLLSFFYYLYG  124 (173)
Q Consensus        81 ~~~~~~~l~D~T~I~n~~~L~~~~k~~~iKLafyll~Ffy~Ly~  124 (173)
                      +     |++|||||||  +|+++|||+++|++||++.||+++||
T Consensus        92 ~-----~l~D~T~If~--~L~~~kk~~~iKl~~yll~ff~yly~  128 (128)
T PF03311_consen   92 Q-----HLYDPTEIFN--QLKREKKESFIKLGFYLLLFFYYLYR  128 (128)
T ss_pred             C-----ccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7     9999999999  69999999999999999999999986

The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane

>KOG2729|consensus

Probab=99.77  E-value=3.5e-20  Score=146.87  Aligned_cols=60  Identities=40%  Similarity=0.703  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHhhhccccceeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738        113 FYLLSFFYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF  172 (173)
Q Consensus       113 fyll~Ffy~Ly~LI~alL~ffa~~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~  172 (173)
                      +-...+++.+..+.++.+.++++|++|+++|||+||+||+|+|||+|++|+||+++||++
T Consensus         3 ~~~~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~K   62 (137)
T KOG2729|consen    3 FTFAAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLL   62 (137)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHH
Confidence            345567788888889999999999999999999999999999999999999999999975

>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling

Probab=99.62  E-value=3.8e-17  Score=127.60  Aligned_cols=54  Identities=41%  Similarity=0.704  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhhccccceeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738        119 FYYLYGSEFSYLSFFKDLTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF  172 (173)
Q Consensus       119 fy~Ly~LI~alL~ffa~~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~  172 (173)
                      .+.+..++.+++.+.++|++++++|||+||+||+|+|+|+||+|+||+++|+++
T Consensus         8 ~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l   61 (128)
T PF03311_consen    8 LWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFL   61 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555667888899999999999999999999999999999999999999974

The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane

>PLN00174 predicted protein; Provisional

Probab=99.42  E-value=3.6e-14  Score=115.13  Aligned_cols=37  Identities=38%  Similarity=0.731  Sum_probs=33.3

Q ss_pred             eeEEEecccccccCChHHhhhcCCCchhhHHhhhhhc
Q psy12738        136 LTVIAFDELKVDYKNPIDQCNSLNPLVLPEYLAHAIF  172 (173)
Q Consensus       136 ~~ii~~~dLe~D~~Np~d~~~~lN~lv~pE~~~~~~~  172 (173)
                      +.--.+||||+||+||+|+|+|+|+||+||+++||++
T Consensus        31 ~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l   67 (160)
T PLN00174         31 YTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFL   67 (160)
T ss_pred             chHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHH
Confidence            3334689999999999999999999999999999985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00