Psyllid ID: psy12788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSEV
Secondary Structure (PSIPRED)
ccEEccccccEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEEEEEEEEEEccEEEEEEcccEEEEEEccccccccEEEEEEccccEEEEEEEEccEEEEEEEcccEEEEEEcccccEEEEEcccccccEEEEEEccEEEEEEEccEEEEEEEccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccEEEEEcccEEEEEccccEEEEEcccccEEEEEEcccccccccEEEEEEEcccccEEEEEcccEEEEEEcccccccHHHcccccccccEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHEEcccEEEEEEcccEEEEEEccccccccEEEEEEcccEEEEEEEEEccccEEEEEcccEEEEEEcccccccEEccccccccEEEEEccccEEEEEEccEEEEEEEccccccEEEEcccccccc
Coil and Loop (DISEMBL)
grvvqhpvppyalswpagyilAAGSDRIVTIYesdgrvhrifdytaphykereftvacsspsgqavvvgsydniklfawspsksvweeqpnktipnlytisalswkrdgsriacgglcgSVELFESVLKRTIWKGKFEMIyvspsqvlvkplsgeskgrgvilksqygyeitdvaimgndrylvartpdtllLGDLHRNLLsevlwpdsgrnekfyfdNVTVCLVFNAGelsiieygnneiltcvriptdssev
Flexible Loop (DISEMBL)
grvvqhpvppyalswpaGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKsvweeqpnktipnLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIyvspsqvlvkplsgeskgrgvilkSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIieygnneiltcvriptdssev
Low Complexity Region (SEG)
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSEV
Disordered region (IsUnstruct)
*******VPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRI*******
Disordered Region (DISOPRED)
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTD****
Disordered Region (DISEMBL)
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSEV
Disordered Region (DISPRO)
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q5RHH4	1745	Intraflagellar transport	yes	N/A	0.952	0.138	0.573	2e-80
Q6VH22	1749	Intraflagellar transport	yes	N/A	0.952	0.138	0.560	4e-80
Q9UG01	1749	Intraflagellar transport	yes	N/A	0.952	0.138	0.560	1e-79
Q9JKU3	1749	Intraflagellar transport	yes	N/A	0.952	0.138	0.556	2e-79
Q9W040	1772	Intraflagellar transport	yes	N/A	0.956	0.137	0.560	2e-78
Q5DM57	1755	Intraflagellar transport	N/A	N/A	0.937	0.135	0.453	8e-54
Q22830	1737	Intraflagellar transport	yes	N/A	0.960	0.140	0.38	3e-44

>sp|Q5RHH4|IF172_DANRE Intraflagellar transport protein 172 homolog OS=Danio rerio GN=ift172 PE=2 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 183/246 (74%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G+++ H  PPYAL+W    I+ AG D+ +  Y  +G V + FDY+     E+EFTVA SS
Sbjct: 191 GKLLTHACPPYALAWGTNSIIVAGCDKKIVAYGKEGNVIQTFDYSRDR-AEKEFTVAASS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           PSGQ++VVGS+D +++F WSP K  W+E   K IPNLYTI+ALSWK+DGSR++ G LCG 
Sbjct: 250 PSGQSIVVGSFDRLRVFNWSPRKGTWDESSPKEIPNLYTITALSWKKDGSRLSVGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE+F+  L+R+I+K KFEM YV  SQV+V+ L   S G  V+LKSQYGYEI +V +MG D
Sbjct: 310 VEMFDCCLRRSIYKNKFEMTYVGLSQVIVRNL---STGTRVVLKSQYGYEIDEVKVMGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           +YLVA T DTLLLGDL  N LSEV W  SG NEKF+F+N TVC++FNAGEL+++EYG+N+
Sbjct: 367 QYLVAHTSDTLLLGDLVSNKLSEVAWQGSGGNEKFFFENETVCMIFNAGELALVEYGSND 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Required for the maintenance and formation of cilia.
Danio rerio (taxid: 7955)

>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog OS=Mus musculus GN=Ift172 PE=1 SV=1

 Score =  297 bits (761), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 182/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQ+VV+GSYD +++F WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct: 250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T DTLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct: 367 RYLVAHTSDTLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query: 241 ILTCVR 246
            L  VR
Sbjct: 427 SLGSVR 432

Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway.

Mus musculus (taxid: 10090)

>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 181/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W    I+AAG DR +  Y  +G + + FDY+    +EREFT A SS
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDP-QEREFTTAVSS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQ+VV+GSYD +++F W P +S+WEE   K I NLYTI+AL+WKRDGSR+  G LCG 
Sbjct: 250 PGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T +TLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYGNN+
Sbjct: 367 RYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNND 426

Query: 241 ILTCVR 246
            L  VR
Sbjct: 427 TLGSVR 432

Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway.

Homo sapiens (taxid: 9606)

>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog OS=Rattus norvegicus GN=Ift172 PE=1 SV=1

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/246 (55%), Positives = 182/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct: 191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQ+VV+GSYD +++F WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct: 250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFE+ YV PSQ++VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQLIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T DTLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct: 367 RYLVAHTSDTLLLGDLNTNRLSEIPWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query: 241 ILTCVR 246
            L  VR
Sbjct: 427 SLGSVR 432

Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q9W040|OSM1_DROME Intraflagellar transport protein osm-1 OS=Drosophila melanogaster GN=osm-1 PE=3 SV=2

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 180/246 (73%), Gaps = 3/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           GRVVQHPVPP+AL+WP G   A G D+ +  Y+S GR  R FD++     EREFTVA  S
Sbjct: 208 GRVVQHPVPPFALAWPQGGFCAGGCDQRIVFYDSMGRQLRTFDHSRTE-GEREFTVAACS 266

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P+GQAV  GS+D I++FAWSP +  W E   K +  LYT+S+L W+RDG+R+A G + G+
Sbjct: 267 PNGQAVAFGSFDRIRIFAWSPRQGAWSESATKEVACLYTLSSLLWRRDGARLALGSVSGA 326

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           V LFESVL+RT+W+ KFE+I+V+PSQ+LV+ L+  S+   + ++SQ G EI DV IMG D
Sbjct: 327 VLLFESVLRRTVWQDKFELIFVAPSQLLVRSLTEPSQ--ALTIESQLGLEIDDVRIMGRD 384

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
            YLVART ++L+L DL RNL SEV W  SG +E+FYF+N TVCL+FN GELS++EYG N 
Sbjct: 385 NYLVARTEESLILCDLTRNLSSEVPWTASGHHERFYFENPTVCLIFNVGELSLVEYGENS 444

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 445 ILGSVR 450

Required for the maintenance and formation of cilia.

Drosophila melanogaster (taxid: 7227)

>sp|Q5DM57|IF172_CHLRE Intraflagellar transport protein 172 OS=Chlamydomonas reinhardtii GN=IFT172 PE=1 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 111/245 (45%), Positives = 158/245 (64%), Gaps = 7/245 (2%)

Query: 2   RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
           ++V H   PY+L W    I AAG+D  V  Y+ +GR  R FDY+  + + REFT    +P
Sbjct: 198 QLVVHSCVPYSLGW-GSCIAAAGNDNRVVFYDLNGREIRSFDYSN-NDEVREFTTCAFNP 255

Query: 62  SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
           SG  VV G+Y+   ++ ++  ++ WEE  +K I N Y +SA SWK DGS++  G + G+V
Sbjct: 256 SGDTVVFGTYNRFYMYTFNIQRNDWEEAGHKQIDNFYAVSAASWKPDGSKMTVGSMTGAV 315

Query: 122 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181
           +++++ +KR ++KGKFE  YVS S V+VK L     G  ++LKS YGYEI  + I  +DR
Sbjct: 316 DMYDACVKRHMYKGKFEFTYVSKSAVIVKTLK---TGMRIVLKSVYGYEIEKINIY-HDR 371

Query: 182 YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEI 241
           YL+ART  TLL+GDL    LSE+ W DS  +EKF+F+N  VC+V  AGEL I+EYG N++
Sbjct: 372 YLIARTTYTLLMGDLDTCKLSEIPW-DSDGSEKFHFENERVCMVHYAGELHIVEYGRNDV 430

Query: 242 LTCVR 246
           L   R
Sbjct: 431 LGTCR 435

Required for the maintenance and formation of cilia and participates in the control of flagellar assembly/disassembly at the tip. Involved in regulating the transition between anterograde and retrograde intraflagellar transport at the tip.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q22830|OSM1_CAEEL Intraflagellar transport protein osm-1 OS=Caenorhabditis elegans GN=osm-1 PE=2 SV=4

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/250 (38%), Positives = 141/250 (56%), Gaps = 6/250 (2%)

Query: 2   RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
           ++    VPPY L +    ++ A SDR V  Y  +G V + FDY      E+EF+     P
Sbjct: 188 KICTLQVPPYNLVFTNHGLVVATSDRRVLSYTENGVVQQQFDYNDQ--SEKEFSSISCDP 245

Query: 62  SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
           + Q VVV SYD ++LF+WS  +  W+E     I N YTI AL WK DGS I  G +CG V
Sbjct: 246 TAQNVVVASYDRLRLFSWSARRGAWDEGAPLEIQNAYTIGALGWKMDGSTIYAGTVCGGV 305

Query: 122 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181
              +  L+R + K +FE  YV+PS V+++ ++ +++   +   S  G  I ++ IMG DR
Sbjct: 306 FSVDCCLRRGMLKSRFETTYVAPSHVILRDVTNDTRTNVI---SNKGLAIDELKIMGKDR 362

Query: 182 YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEI 241
           Y++  T  ++++ D      SE+ W  SG +EKFYFD    CL+ NAGE++++EYG +  
Sbjct: 363 YVIGYTSSSIIIADTESQRFSELEWQ-SGGHEKFYFDFNNCCLIINAGEVTVVEYGVDGS 421

Query: 242 LTCVRIPTDS 251
           L  VR    S
Sbjct: 422 LGWVRTELTS 431

Required for the maintenance and formation of chemosensory cilia that detect chemosensory cues.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
328716745	1766	PREDICTED: intraflagellar transport prot	0.968	0.139	0.649	4e-94
242012769	1752	wimple/ift172, putative [Pediculus human	0.952	0.138	0.617	2e-88
91094669	1734	PREDICTED: similar to osm-1 CG13809-PA [	0.964	0.141	0.595	7e-84
195126757	1748	GI13160 [Drosophila mojavensis] gi|19391	0.956	0.139	0.577	9e-81
195377303	1747	GJ11935 [Drosophila virilis] gi|19415458	0.956	0.139	0.577	4e-80
291239676	1751	PREDICTED: intraflagellar transport prot	0.952	0.138	0.573	7e-80
291239678	1683	PREDICTED: intraflagellar transport prot	0.952	0.143	0.573	9e-80
126303094	1753	PREDICTED: intraflagellar transport prot	0.952	0.138	0.573	1e-79
395530170	1744	PREDICTED: intraflagellar transport prot	0.952	0.138	0.573	1e-79
118089060	1749	PREDICTED: intraflagellar transport prot	0.952	0.138	0.577	1e-79

>gi|328716745|ref|XP_003246027.1| PREDICTED: intraflagellar transport protein 172 homolog [Acyrthosiphon pisum]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 201/251 (80%), Gaps = 5/251 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHY--KEREFTVAC 58
           GR+V HPVPPYALSW +G I+AAG D  V  Y+ +GR  + FDY+       ++EFTVAC
Sbjct: 192 GRIVVHPVPPYALSWASGCIIAAGCDFSVQFYDQNGRSTKQFDYSPASSCPDQKEFTVAC 251

Query: 59  SSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC 118
           SSPSGQAVV+GS++ ++L++WSPSK  WEE+    IPN+YT+SAL+WKRDGSRI CG LC
Sbjct: 252 SSPSGQAVVIGSFNRLRLYSWSPSKLTWEEENVMYIPNMYTVSALAWKRDGSRIICGTLC 311

Query: 119 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR---GVILKSQYGYEITDVA 175
           G +ELFESV+KRT+WK KFEM YV PSQVLVKPL+ ES  +   GVILKSQYG+EI DV 
Sbjct: 312 GGMELFESVIKRTVWKNKFEMTYVGPSQVLVKPLNNESSNQSSHGVILKSQYGHEIEDVR 371

Query: 176 IMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIE 235
           +MG DRYL+ RT DTLLLGD+ RNLLSEV+WP S RNEKFYF+N +VCL+FN GEL+++E
Sbjct: 372 VMGEDRYLIGRTRDTLLLGDMERNLLSEVVWPYSERNEKFYFENPSVCLIFNCGELTLVE 431

Query: 236 YGNNEILTCVR 246
           YGN++IL  VR
Sbjct: 432 YGNDQILATVR 442

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012769|ref|XP_002427100.1| wimple/ift172, putative [Pediculus humanus corporis] gi|212511358|gb|EEB14362.1| wimple/ift172, putative [Pediculus humanus corporis]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 190/246 (77%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G+V+    PPYAL+W   +IL AG D+ VTIYE DG++ R  DY   +  E+ FTVAC S
Sbjct: 191 GKVLVCSSPPYALAWTLNHILTAGCDKRVTIYEKDGKILRTIDYNKEN--EKGFTVACCS 248

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           PSGQAV +GS+D I+L +W+  K +WEE  +K I NLYTI+AL WKRDGSR+ACG LCG 
Sbjct: 249 PSGQAVALGSFDRIRLLSWNSIKGIWEESTSKEIKNLYTITALHWKRDGSRVACGTLCGG 308

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           V LFESVLKRTI+K KFE+ YV PSQVL+K ++  +   G++LKSQYGYE+ DV IMG D
Sbjct: 309 VLLFESVLKRTIYKNKFEITYVGPSQVLIKSIN--NSDNGIMLKSQYGYEVNDVRIMGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RY+VARTP T+ LGDL +NL+SE++WP+SGRNEKFYFDN  VCL+FN GELS++EYG N+
Sbjct: 367 RYIVARTPHTIFLGDLEKNLVSEIMWPNSGRNEKFYFDNANVCLIFNVGELSLVEYGENK 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094669|ref|XP_972505.1| PREDICTED: similar to osm-1 CG13809-PA [Tribolium castaneum] gi|270016462|gb|EFA12908.1| hypothetical protein TcasGA2_TC006977 [Tribolium castaneum]

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 195/247 (78%), Gaps = 2/247 (0%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           GRV+ + VPP AL+W  G+I  AG ++ V++Y ++G++ + FDY+     E EFTVA  S
Sbjct: 192 GRVILYSVPPCALAWAQGHIFVAGCEKRVSVYNNNGKLVKNFDYSKDE-SEHEFTVATCS 250

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           PSGQAVV+GS++ ++L+ W+  +++WEE P+K I NLY++SAL+WK+DGSR+ CGGLCG 
Sbjct: 251 PSGQAVVMGSFNRLRLYIWNTRRNIWEETPSKEIKNLYSVSALAWKKDGSRMTCGGLCGV 310

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPL-SGESKGRGVILKSQYGYEITDVAIMGN 179
           V LFESVLKRT+WK KFE+ YV PSQVL+KPL S +S   G+I+KSQ+G EI DV IMG 
Sbjct: 311 VMLFESVLKRTVWKDKFEITYVGPSQVLIKPLESIKSNENGIIIKSQHGGEIEDVKIMGK 370

Query: 180 DRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNN 239
           D YLVART +TLL+ DL RNLLSEV W +SGR+EKFYFD  +VCLVFNAGEL++IEYG++
Sbjct: 371 DFYLVARTDETLLVADLQRNLLSEVPWNNSGRHEKFYFDYASVCLVFNAGELTLIEYGDD 430

Query: 240 EILTCVR 246
           ++L  VR
Sbjct: 431 QVLCSVR 437

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126757|ref|XP_002007837.1| GI13160 [Drosophila mojavensis] gi|193919446|gb|EDW18313.1| GI13160 [Drosophila mojavensis]

 Score =  305 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 142/246 (57%), Positives = 185/246 (75%), Gaps = 3/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           GRVVQHPVPP+AL+WP G   AAG D+ +  Y+S GR  R FD++     EREFTVA SS
Sbjct: 190 GRVVQHPVPPFALAWPQGGFCAAGCDQRIVFYDSMGRQQRCFDFSRTE-GEREFTVAASS 248

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P+GQAV  GSYD I++FAWSP +S W E  +K I  LYT+SAL W+RDG+R+A G + G+
Sbjct: 249 PNGQAVAFGSYDRIRIFAWSPRQSAWSESASKEISCLYTLSALIWRRDGARLALGSVSGA 308

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           V L+ESVLKRTIW+ KFE+I+V+PSQ+LV+ L+  ++   + ++SQ G EI DV IMG D
Sbjct: 309 VLLYESVLKRTIWQDKFELIFVAPSQLLVRSLAEPTQ--QLTIESQLGLEIDDVRIMGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
            +LV RT ++L+L DL RNL SEV W  SGR+E+FYF+N+ VCL+FN GELS++EYG+N 
Sbjct: 367 NFLVGRTEESLILCDLTRNLTSEVPWTASGRHERFYFENLNVCLIFNVGELSLVEYGDNR 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377303|ref|XP_002047430.1| GJ11935 [Drosophila virilis] gi|194154588|gb|EDW69772.1| GJ11935 [Drosophila virilis]

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 142/246 (57%), Positives = 183/246 (74%), Gaps = 3/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           GRVVQHPVPP+AL+WP G   AAG D+ +  Y+S GR  R FD++     EREFTVA  S
Sbjct: 190 GRVVQHPVPPFALAWPQGGFCAAGCDQRIVFYDSVGRQQRSFDFSRSE-GEREFTVAACS 248

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P+GQAV  GSYD I++FAWSP +S W E  +K I  LYT+SAL W+RDG+R+A G + G+
Sbjct: 249 PNGQAVAFGSYDRIRIFAWSPRQSAWSESASKEISCLYTLSALIWRRDGARLALGSVSGA 308

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           V LFESVLKRTIW+ KFE+I+V+PSQ+LV+ L+     + + ++SQ G EI DV IMG D
Sbjct: 309 VLLFESVLKRTIWQDKFELIFVAPSQLLVRSLT--EPAQQLTIESQLGLEIDDVRIMGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
            +LV RT ++L+L DL RNL SEV W  SGR+E+FYF+N+ VCL+FN GELS++EYG+N 
Sbjct: 367 NFLVGRTEESLILCDLTRNLSSEVPWTASGRHERFYFENLHVCLIFNVGELSLVEYGDNH 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291239676|ref|XP_002739751.1| PREDICTED: intraflagellar transport protein 172 homolog isoform 1 [Saccoglossus kowalevskii]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 182/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++  H  PPYALSW    I+AAG D+ + +Y  +GR+ + FD+T    +E EFT A +S
Sbjct: 191 GKICTHSCPPYALSWAGNSIMAAGCDKRIIVYGKEGRIVQQFDFTRDP-EEHEFTTAANS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           PSGQ+VV+GSY+ +++F W P + +WEE   K IPNLYTI+ALSWK+DGSR+  G LCG 
Sbjct: 250 PSGQSVVIGSYNRLRVFNWGPRRGMWEEAKMKEIPNLYTITALSWKKDGSRLVAGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VELF+  L+R+I+K KFEM YV  SQV++K LS    G  V+LKS YGYEI +V I+G D
Sbjct: 310 VELFDCCLRRSIYKNKFEMTYVGLSQVIIKNLSS---GTRVVLKSHYGYEIDEVKILGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLV  T DTLLLGDL  N LSEV W ++G NEKF+F+N TVC++FNAGELS++EYG NE
Sbjct: 367 RYLVGHTSDTLLLGDLITNKLSEVPWQNTGGNEKFFFENETVCMIFNAGELSLVEYGANE 426

Query: 241 ILTCVR 246
           +L CVR
Sbjct: 427 VLGCVR 432

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|291239678|ref|XP_002739752.1| PREDICTED: intraflagellar transport protein 172 homolog isoform 2 [Saccoglossus kowalevskii]

 Score =  302 bits (773), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 182/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++  H  PPYALSW    I+AAG D+ + +Y  +GR+ + FD+T    +E EFT A +S
Sbjct: 172 GKICTHSCPPYALSWAGNSIMAAGCDKRIIVYGKEGRIVQQFDFTRDP-EEHEFTTAANS 230

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           PSGQ+VV+GSY+ +++F W P + +WEE   K IPNLYTI+ALSWK+DGSR+  G LCG 
Sbjct: 231 PSGQSVVIGSYNRLRVFNWGPRRGMWEEAKMKEIPNLYTITALSWKKDGSRLVAGTLCGG 290

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VELF+  L+R+I+K KFEM YV  SQV++K LS    G  V+LKS YGYEI +V I+G D
Sbjct: 291 VELFDCCLRRSIYKNKFEMTYVGLSQVIIKNLSS---GTRVVLKSHYGYEIDEVKILGKD 347

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLV  T DTLLLGDL  N LSEV W ++G NEKF+F+N TVC++FNAGELS++EYG NE
Sbjct: 348 RYLVGHTSDTLLLGDLITNKLSEVPWQNTGGNEKFFFENETVCMIFNAGELSLVEYGANE 407

Query: 241 ILTCVR 246
           +L CVR
Sbjct: 408 VLGCVR 413

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|126303094|ref|XP_001371218.1| PREDICTED: intraflagellar transport protein 172 homolog [Monodelphis domestica]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 183/246 (74%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W +  I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct: 191 GKLVSHPCPPYALAWASNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQAVV+GSYD +++  WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct: 250 PGGQAVVLGSYDRLRVLNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct: 310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T DTLLLGDL+ N LSEV W  SG NEK++F+N  VC++FNAGEL+++EYGNN+
Sbjct: 367 RYLVAHTSDTLLLGDLNTNRLSEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNND 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395530170|ref|XP_003767171.1| PREDICTED: intraflagellar transport protein 172 homolog [Sarcophilus harrisii]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 183/246 (74%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W +  I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct: 182 GKLVSHPCPPYALAWASNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 240

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQAVV+GSYD +++  WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct: 241 PGGQAVVLGSYDRLRVLNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 300

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct: 301 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 357

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T DTLLLGDL+ N LSEV W  SG NEK++F+N  VC++FNAGEL+++EYGNN+
Sbjct: 358 RYLVAHTSDTLLLGDLNTNRLSEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNND 417

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 418 ILGSVR 423

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118089060|ref|XP_419993.2| PREDICTED: intraflagellar transport protein 172 homolog [Gallus gallus]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/246 (57%), Positives = 180/246 (73%), Gaps = 4/246 (1%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
           G++V HP PPYAL+W    I+AAG D+ +  Y  +G V + FDY+     E+EFT A +S
Sbjct: 191 GKLVMHPCPPYALAWALNSIVAAGCDKKIVAYGKEGNVIQTFDYSRDS-SEKEFTTAAAS 249

Query: 61  PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
           P GQAVV+GSYD +++  WSP +  WEE   K IP+LYTI++L+WKRDGSRI  G LCG 
Sbjct: 250 PGGQAVVIGSYDRLRVLNWSPRRGAWEEAKPKEIPHLYTITSLAWKRDGSRICAGTLCGG 309

Query: 121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
           VE F+  L+R+I+K KFEM YV PSQV+VK L   S G  V+LKS YGYEI +V I+G D
Sbjct: 310 VEQFDCCLRRSIYKNKFEMTYVGPSQVIVKNL---STGTRVVLKSHYGYEIDEVKILGKD 366

Query: 181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
           RYLVA T DTLLLGD++ N LSEV W  SG NEKF+FDN  VC++FNAGEL+++EYG+N+
Sbjct: 367 RYLVAHTSDTLLLGDINSNKLSEVAWQGSGGNEKFFFDNENVCMIFNAGELTLVEYGSND 426

Query: 241 ILTCVR 246
           IL  VR
Sbjct: 427 ILGSVR 432

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
UNIPROTKB|E1BVT1	1753	IFT172 "Uncharacterized protei	0.952	0.138	0.577	9.7e-74
ZFIN|ZDB-GENE-040827-1	1745	ift172 "intraflagellar transpo	0.952	0.138	0.573	3.3e-73
MGI|MGI:2682064	1749	Ift172 "intraflagellar transpo	0.952	0.138	0.560	5.4e-73
UNIPROTKB|E2RF25	1749	IFT172 "Uncharacterized protei	0.952	0.138	0.565	1.4e-72
UNIPROTKB|Q9UG01	1749	IFT172 "Intraflagellar transpo	0.952	0.138	0.560	1.9e-72
RGD|620744	1749	Ift172 "intraflagellar transpo	0.952	0.138	0.556	1.9e-72
UNIPROTKB|I3LPC6	1749	IFT172 "Uncharacterized protei	0.952	0.138	0.560	6.3e-72
UNIPROTKB|E1BJT7	1749	LOC100848219 "Uncharacterized	0.952	0.138	0.560	8.1e-72
FB|FBgn0035317	1772	osm-1 "osm-1" [Drosophila mela	0.956	0.137	0.560	3.3e-70
UNIPROTKB|Q5DM57	1755	IFT172 "Intraflagellar transpo	0.929	0.134	0.459	1.4e-50

UNIPROTKB|E1BVT1 IFT172 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 757 (271.5 bits), Expect = 9.7e-74, P = 9.7e-74
 Identities = 142/246 (57%), Positives = 180/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG D+ +  Y  +G V + FDY+     E+EFT A +S
Sbjct:   191 GKLVMHPCPPYALAWALNSIVAAGCDKKIVAYGKEGNVIQTFDYSRDS-SEKEFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQAVV+GSYD +++  WSP +  WEE   K IP+LYTI++L+WKRDGSRI  G LCG 
Sbjct:   250 PGGQAVVIGSYDRLRVLNWSPRRGAWEEAKPKEIPHLYTITSLAWKRDGSRICAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFEM YV PSQV+VK LS    G  V+LKS YGYEI +V I+G D
Sbjct:   310 VEQFDCCLRRSIYKNKFEMTYVGPSQVIVKNLS---TGTRVVLKSHYGYEIDEVKILGKD 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGD++ N LSEV W  SG NEKF+FDN  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDINSNKLSEVAWQGSGGNEKFFFDNENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
             IL  VR
Sbjct:   427 ILGSVR 432

GO:0001841 "neural tube formation" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

ZFIN|ZDB-GENE-040827-1 ift172 "intraflagellar transport 172" [Danio rerio (taxid:7955)]

 Score = 752 (269.8 bits), Expect = 3.3e-73, P = 3.3e-73
 Identities = 141/246 (57%), Positives = 183/246 (74%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G+++ H  PPYAL+W    I+ AG D+ +  Y  +G V + FDY+     E+EFTVA SS
Sbjct:   191 GKLLTHACPPYALAWGTNSIIVAGCDKKIVAYGKEGNVIQTFDYSRDR-AEKEFTVAASS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             PSGQ++VVGS+D +++F WSP K  W+E   K IPNLYTI+ALSWK+DGSR++ G LCG 
Sbjct:   250 PSGQSIVVGSFDRLRVFNWSPRKGTWDESSPKEIPNLYTITALSWKKDGSRLSVGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE+F+  L+R+I+K KFEM YV  SQV+V+ LS    G  V+LKSQYGYEI +V +MG D
Sbjct:   310 VEMFDCCLRRSIYKNKFEMTYVGLSQVIVRNLS---TGTRVVLKSQYGYEIDEVKVMGKD 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             +YLVA T DTLLLGDL  N LSEV W  SG NEKF+F+N TVC++FNAGEL+++EYG+N+
Sbjct:   367 QYLVAHTSDTLLLGDLVSNKLSEVAWQGSGGNEKFFFENETVCMIFNAGELALVEYGSND 426

Query:   241 ILTCVR 246
             IL  VR
Sbjct:   427 ILGSVR 432

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0048793 "pronephros development" evidence=IGI

GO:0032006 "regulation of TOR signaling cascade" evidence=IMP

GO:0005929 "cilium" evidence=IEA;ISS

GO:0042384 "cilium assembly" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

MGI|MGI:2682064 Ift172 "intraflagellar transport 172" [Mus musculus (taxid:10090)]

 Score = 750 (269.1 bits), Expect = 5.4e-73, P = 5.4e-73
 Identities = 138/246 (56%), Positives = 182/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++F WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 SLGSVR 432

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001841 "neural tube formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005929 "cilium" evidence=IDA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI;IMP

GO:0016485 "protein processing" evidence=IMP

GO:0021522 "spinal cord motor neuron differentiation" evidence=IMP

GO:0031514 "motile cilium" evidence=ISO

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|E2RF25 IFT172 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 746 (267.7 bits), Expect = 1.4e-72, P = 1.4e-72
 Identities = 139/246 (56%), Positives = 180/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+     EREFT A +S
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-NEREFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++  WSP +SVWEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVLNWSPRRSVWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGDL+ N LSEV W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDLNTNRLSEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 TLGSVR 432

GO:0042384 "cilium assembly" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

UNIPROTKB|Q9UG01 IFT172 "Intraflagellar transport protein 172 homolog" [Homo sapiens (taxid:9606)]

 Score = 745 (267.3 bits), Expect = 1.9e-72, P = 1.9e-72
 Identities = 138/246 (56%), Positives = 181/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G + + FDY+    +EREFT A SS
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDP-QEREFTTAVSS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++F W P +S+WEE   K I NLYTI+AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T +TLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYGNN+
Sbjct:   367 RYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 TLGSVR 432

GO:0001841 "neural tube formation" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0005929 "cilium" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

RGD|620744 Ift172 "intraflagellar transport 172 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 745 (267.3 bits), Expect = 1.9e-72, P = 1.9e-72
 Identities = 137/246 (55%), Positives = 182/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDP-QEREFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++F WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQ++VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQLIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGDL+ N LSE+ W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDLNTNRLSEIPWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 SLGSVR 432

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001841 "neural tube formation" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005929 "cilium" evidence=ISO;ISS

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0008134 "transcription factor binding" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO

GO:0042384 "cilium assembly" evidence=ISO;ISS

UNIPROTKB|I3LPC6 IFT172 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 740 (265.6 bits), Expect = 6.3e-72, P = 6.3e-72
 Identities = 138/246 (56%), Positives = 180/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+    +EREFT A +S
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGREGHVLQTFDYSRDP-QEREFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++  WSP +S+WEE   K I NLYT++AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVLNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGDL  N LSEV W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDLATNRLSEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 PLGSVR 432

GO:0042384 "cilium assembly" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

UNIPROTKB|E1BJT7 LOC100848219 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 739 (265.2 bits), Expect = 8.1e-72, P = 8.1e-72
 Identities = 138/246 (56%), Positives = 179/246 (72%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             G++V HP PPYAL+W    I+AAG DR +  Y  +G V + FDY+     EREFT A +S
Sbjct:   191 GKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDPL-EREFTTAAAS 249

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P GQ+VV+GSYD +++  WSP +++WEE   K I NLYTI+AL+WKRDGSR+  G LCG 
Sbjct:   250 PGGQSVVLGSYDRLRVLNWSPRRNIWEEAKPKEIANLYTITALAWKRDGSRLCAGTLCGG 309

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             VE F+  L+R+I+K KFE+ YV PSQV+VK LS    G  V+LKS YGYE+ +V I+G +
Sbjct:   310 VEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSS---GTRVVLKSHYGYEVEEVKILGKE 366

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
             RYLVA T DTLLLGDL  N LSEV W  SG NEK++F+N  VC++FNAGEL+++EYG+N+
Sbjct:   367 RYLVAHTSDTLLLGDLTTNRLSEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSND 426

Query:   241 ILTCVR 246
              L  VR
Sbjct:   427 TLGSVR 432

GO:0042384 "cilium assembly" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

FB|FBgn0035317 osm-1 "osm-1" [Drosophila melanogaster (taxid:7227)]

 Score = 724 (259.9 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 138/246 (56%), Positives = 180/246 (73%)

Query:     1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
             GRVVQHPVPP+AL+WP G   A G D+ +  Y+S GR  R FD++     EREFTVA  S
Sbjct:   208 GRVVQHPVPPFALAWPQGGFCAGGCDQRIVFYDSMGRQLRTFDHSRTE-GEREFTVAACS 266

Query:    61 PSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS 120
             P+GQAV  GS+D I++FAWSP +  W E   K +  LYT+S+L W+RDG+R+A G + G+
Sbjct:   267 PNGQAVAFGSFDRIRIFAWSPRQGAWSESATKEVACLYTLSSLLWRRDGARLALGSVSGA 326

Query:   121 VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND 180
             V LFESVL+RT+W+ KFE+I+V+PSQ+LV+ L+  S+   + ++SQ G EI DV IMG D
Sbjct:   327 VLLFESVLRRTVWQDKFELIFVAPSQLLVRSLTEPSQA--LTIESQLGLEIDDVRIMGRD 384

Query:   181 RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE 240
              YLVART ++L+L DL RNL SEV W  SG +E+FYF+N TVCL+FN GELS++EYG N 
Sbjct:   385 NYLVARTEESLILCDLTRNLSSEVPWTASGHHERFYFENPTVCLIFNVGELSLVEYGENS 444

Query:   241 ILTCVR 246
             IL  VR
Sbjct:   445 ILGSVR 450

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005871 "kinesin complex" evidence=ISS

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0042384 "cilium assembly" evidence=ISM;IEP

UNIPROTKB|Q5DM57 IFT172 "Intraflagellar transport protein 172" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 540 (195.1 bits), Expect = 1.4e-50, P = 1.4e-50
 Identities = 112/244 (45%), Positives = 159/244 (65%)

Query:     2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP 61
             ++V H   PY+L W    I AAG+D  V  Y+ +GR  R FDY+  + + REFT    +P
Sbjct:   198 QLVVHSCVPYSLGW-GSCIAAAGNDNRVVFYDLNGREIRSFDYSN-NDEVREFTTCAFNP 255

Query:    62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
             SG  VV G+Y+   ++ ++  ++ WEE  +K I N Y +SA SWK DGS++  G + G+V
Sbjct:   256 SGDTVVFGTYNRFYMYTFNIQRNDWEEAGHKQIDNFYAVSAASWKPDGSKMTVGSMTGAV 315

Query:   122 ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR 181
             +++++ +KR ++KGKFE  YVS S V+VK L     G  ++LKS YGYEI  + I  +DR
Sbjct:   316 DMYDACVKRHMYKGKFEFTYVSKSAVIVKTLK---TGMRIVLKSVYGYEIEKINIY-HDR 371

Query:   182 YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEI 241
             YL+ART  TLL+GDL    LSE+ W DS  +EKF+F+N  VC+V  AGEL I+EYG N++
Sbjct:   372 YLIARTTYTLLMGDLDTCKLSEIPW-DSDGSEKFHFENERVCMVHYAGELHIVEYGRNDV 430

Query:   242 L-TC 244
             L TC
Sbjct:   431 LGTC 434

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030992 "intraflagellar transport particle B" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RHH4	IF172_DANRE	No assigned EC number	0.5731	0.9527	0.1386	yes	N/A
Q6VH22	IF172_MOUSE	No assigned EC number	0.5609	0.9527	0.1383	yes	N/A
Q9W040	OSM1_DROME	No assigned EC number	0.5609	0.9566	0.1371	yes	N/A
Q9UG01	IF172_HUMAN	No assigned EC number	0.5609	0.9527	0.1383	yes	N/A
Q9JKU3	IF172_RAT	No assigned EC number	0.5569	0.9527	0.1383	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG0272|consensus	459		99.96
KOG0279|consensus	315		99.96
KOG0272|consensus	459		99.95
KOG3616|consensus	1636		99.95
KOG0271|consensus	480		99.94
KOG0263|consensus	707		99.93
KOG0271|consensus	480		99.93
KOG0273|consensus	524		99.92
KOG0645|consensus	312		99.92
KOG0286|consensus	343		99.92
KOG0315|consensus	311		99.91
KOG0266|consensus	456		99.91
KOG0279|consensus	315		99.91
KOG0263|consensus	707		99.91
PTZ00421	493	coronin; Provisional	99.9
KOG0286|consensus	343		99.9
PTZ00420	568	coronin; Provisional	99.88
KOG0266|consensus	456		99.88
KOG0318|consensus	603		99.88
KOG0316|consensus	307		99.88
KOG0291|consensus	893		99.88
KOG0315|consensus	311		99.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
KOG0283|consensus	712		99.87
KOG0295|consensus	406		99.87
KOG0281|consensus	499		99.87
KOG0265|consensus	338		99.87
KOG0282|consensus	503		99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0292|consensus	1202		99.86
KOG0318|consensus	603		99.85
KOG0293|consensus	519		99.85
KOG0273|consensus	524		99.85
KOG0285|consensus	460		99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0285|consensus	460		99.84
KOG0291|consensus	893		99.84
KOG0295|consensus	406		99.84
KOG0265|consensus	338		99.84
KOG0284|consensus	464		99.83
KOG0277|consensus	311		99.83
KOG0296|consensus	399		99.83
KOG0281|consensus	499		99.83
KOG0276|consensus	794		99.82
KOG1446|consensus	311		99.82
KOG1407|consensus	313		99.82
KOG0296|consensus	399		99.81
KOG0284|consensus	464		99.81
KOG0264|consensus	422		99.81
KOG0300|consensus	481		99.81
KOG0313|consensus	423		99.81
PTZ00421	493	coronin; Provisional	99.81
KOG0275|consensus	508		99.8
KOG0294|consensus	362		99.8
KOG0640|consensus	430		99.8
KOG0645|consensus	312		99.8
KOG0772|consensus	641		99.8
KOG0293|consensus	519		99.79
KOG0313|consensus	423		99.79
KOG0319|consensus	775		99.79
KOG0772|consensus	641		99.79
KOG0274|consensus	537		99.79
KOG0282|consensus	503		99.79
KOG0319|consensus	775		99.78
KOG0643|consensus	327		99.78
PTZ00420	568	coronin; Provisional	99.76
KOG0303|consensus	472		99.76
KOG4283|consensus	397		99.76
KOG0283|consensus	712		99.76
KOG1407|consensus	313		99.76
KOG0275|consensus	508		99.76
KOG0274|consensus	537		99.76
KOG0289|consensus	506		99.75
KOG0310|consensus	487		99.75
KOG0973|consensus	942		99.75
KOG1332|consensus	299		99.75
KOG0305|consensus	484		99.75
KOG0278|consensus	334		99.75
KOG0267|consensus	825		99.75
KOG0640|consensus	430		99.75
KOG0288|consensus	459		99.74
KOG0277|consensus	311		99.73
KOG0647|consensus	347		99.73
KOG0269|consensus	839		99.73
KOG0278|consensus	334		99.73
KOG0973|consensus	942		99.72
KOG0316|consensus	307		99.71
KOG0289|consensus	506		99.71
KOG0292|consensus	1202		99.71
KOG0306|consensus	888		99.71
KOG0264|consensus	422		99.71
KOG0276|consensus	794		99.71
KOG0294|consensus	362		99.7
KOG0300|consensus	481		99.7
KOG1274|consensus	933		99.7
KOG1332|consensus	299		99.69
KOG1524|consensus	737		99.69
KOG0641|consensus	350		99.69
KOG0302|consensus	440		99.69
KOG0308|consensus	735		99.69
KOG0310|consensus	487		99.69
KOG0302|consensus	440		99.69
KOG0306|consensus	888		99.68
KOG1446|consensus	311		99.68
KOG2096|consensus	420		99.67
KOG0299|consensus	479		99.66
KOG1036|consensus	323		99.64
KOG0270|consensus	463		99.63
KOG0305|consensus	484		99.63
KOG0641|consensus	350		99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.62
KOG0269|consensus	839		99.61
KOG0321|consensus	720		99.61
KOG4283|consensus	397		99.6
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.6
KOG0288|consensus	459		99.59
KOG0643|consensus	327		99.59
KOG2048|consensus	691		99.59
KOG0268|consensus	433		99.59
KOG1539|consensus	910		99.59
KOG0301|consensus	745		99.58
KOG0639|consensus	705		99.58
KOG2445|consensus	361		99.57
KOG1273|consensus	405		99.57
KOG0299|consensus	479		99.56
KOG0646|consensus	476		99.56
KOG0644|consensus	1113		99.56
KOG1524|consensus	737		99.55
KOG0308|consensus	735		99.55
KOG0647|consensus	347		99.55
KOG2096|consensus	420		99.54
KOG1063|consensus	764		99.54
KOG1274|consensus	933		99.53
KOG0646|consensus	476		99.52
KOG1036|consensus	323		99.51
KOG0290|consensus	364		99.51
KOG1523|consensus	361		99.51
KOG1034|consensus	385		99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG0267|consensus	825		99.49
KOG1034|consensus	385		99.49
KOG2139|consensus	445		99.48
KOG1445|consensus	1012		99.48
KOG0771|consensus	398		99.48
KOG1009|consensus	434		99.48
KOG2106|consensus	626		99.47
KOG2110|consensus	391		99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG0301|consensus	745		99.45
KOG0268|consensus	433		99.45
KOG0650|consensus	733		99.44
KOG2055|consensus	514		99.44
KOG2394|consensus	636		99.43
KOG1539|consensus	910		99.43
KOG0321|consensus	720		99.43
KOG1063|consensus	764		99.42
KOG1273|consensus	405		99.42
KOG1538|consensus	1081		99.41
KOG0307|consensus	1049		99.38
PRK01742	429	tolB translocation protein TolB; Provisional	99.38
KOG1408|consensus	1080		99.37
KOG0639|consensus	705		99.34
KOG4328|consensus	498		99.34
KOG4378|consensus	673		99.33
KOG2048|consensus	691		99.33
KOG2139|consensus	445		99.32
KOG1007|consensus	370		99.32
KOG1007|consensus	370		99.3
KOG1188|consensus	376		99.3
KOG2445|consensus	361		99.3
KOG0307|consensus	1049		99.3
KOG1009|consensus	434		99.29
KOG2106|consensus	626		99.28
KOG1445|consensus	1012		99.28
KOG0649|consensus	325		99.27
KOG4328|consensus	498		99.25
KOG0322|consensus	323		99.24
KOG1963|consensus	792		99.23
KOG0322|consensus	323		99.23
KOG1523|consensus	361		99.23
KOG0303|consensus	472		99.22
KOG2055|consensus	514		99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.21
KOG2110|consensus	391		99.21
KOG0771|consensus	398		99.21
PRK11028	330	6-phosphogluconolactonase; Provisional	99.21
KOG1240|consensus	1431		99.2
KOG0642|consensus	577		99.2
COG2319	466	FOG: WD40 repeat [General function prediction only	99.19
KOG2919|consensus	406		99.19
KOG1310|consensus	758		99.19
KOG0270|consensus	463		99.18
KOG4378|consensus	673		99.18
KOG0649|consensus	325		99.18
KOG1408|consensus	1080		99.17
KOG0290|consensus	364		99.16
KOG1517|consensus	1387		99.15
PRK01742	429	tolB translocation protein TolB; Provisional	99.13
PRK05137	435	tolB translocation protein TolB; Provisional	99.13
KOG2111|consensus	346		99.11
PRK11028	330	6-phosphogluconolactonase; Provisional	99.11
KOG1538|consensus	1081		99.09
PRK04922	433	tolB translocation protein TolB; Provisional	99.09
KOG4227|consensus	609		99.07
KOG2919|consensus	406		99.07
PRK03629	429	tolB translocation protein TolB; Provisional	99.06
KOG1188|consensus	376		99.02
COG2319	466	FOG: WD40 repeat [General function prediction only	98.98
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.92
KOG1963|consensus	792		98.91
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.91
KOG0650|consensus	733		98.9
PRK05137	435	tolB translocation protein TolB; Provisional	98.9
PRK03629	429	tolB translocation protein TolB; Provisional	98.88
PRK02889	427	tolB translocation protein TolB; Provisional	98.86
KOG4497|consensus	447		98.85
PRK04922	433	tolB translocation protein TolB; Provisional	98.83
KOG0974|consensus	967		98.83
PRK00178	430	tolB translocation protein TolB; Provisional	98.81
KOG2321|consensus	703		98.81
KOG1587|consensus	555		98.81
KOG1310|consensus	758		98.8
KOG2394|consensus	636		98.8
KOG0974|consensus	967		98.79
PRK04792	448	tolB translocation protein TolB; Provisional	98.78
KOG2111|consensus	346		98.77
KOG3881|consensus	412		98.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.75
PRK01029	428	tolB translocation protein TolB; Provisional	98.74
PRK01029	428	tolB translocation protein TolB; Provisional	98.73
KOG1334|consensus	559		98.73
KOG1517|consensus	1387		98.72
KOG1587|consensus	555		98.68
PRK00178	430	tolB translocation protein TolB; Provisional	98.66
PRK04792	448	tolB translocation protein TolB; Provisional	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.61
KOG0642|consensus	577		98.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.61
KOG1354|consensus	433		98.6
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.6
KOG2315|consensus	566		98.6
KOG1240|consensus	1431		98.59
KOG1272|consensus	545		98.56
KOG1272|consensus	545		98.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.52
COG4946	668	Uncharacterized protein related to the periplasmic	98.52
KOG4227|consensus	609		98.51
KOG2066|consensus	846		98.49
KOG4497|consensus	447		98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.47
KOG0644|consensus	1113		98.45
KOG2321|consensus	703		98.44
KOG4532|consensus	344		98.41
KOG3881|consensus	412		98.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.37
KOG1064|consensus	2439		98.33
KOG0280|consensus	339		98.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.31
KOG4190|consensus	1034		98.31
KOG3914|consensus	390		98.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.2
COG4946	668	Uncharacterized protein related to the periplasmic	98.19
KOG2315|consensus	566		98.17
KOG4547|consensus	541		98.17
KOG1409|consensus	404		98.16
KOG3914|consensus	390		98.16
KOG1334|consensus	559		98.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.16
KOG3621|consensus	726		98.07
KOG4547|consensus	541		98.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.03
PRK04043	419	tolB translocation protein TolB; Provisional	98.02
KOG2041|consensus	1189		98.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.01
PRK04043	419	tolB translocation protein TolB; Provisional	98.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.98
KOG0280|consensus	339		97.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.97
KOG2066|consensus	846		97.96
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.9
KOG4532|consensus	344		97.88
KOG1409|consensus	404		97.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.68
KOG1064|consensus	2439		97.68
KOG4714|consensus	319		97.66
KOG4714|consensus	319		97.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.6
KOG0882|consensus	558		97.57
KOG1354|consensus	433		97.55
KOG1912|consensus	1062		97.55
KOG4640|consensus	665		97.54
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.49
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.48
KOG1920|consensus	1265		97.46
KOG4640|consensus	665		97.43
KOG2395|consensus	644		97.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.3
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.26
KOG2695|consensus	425		97.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
KOG1832|consensus	1516		97.18
KOG0309|consensus	1081		97.14
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.14
KOG2114|consensus	933		97.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.07
KOG3617|consensus	1416		97.07
KOG1912|consensus	1062		97.0
KOG2314|consensus	698		97.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.96
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.94
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.9
KOG1275|consensus	1118		96.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.83
KOG1920|consensus	1265		96.79
KOG4190|consensus	1034		96.64
KOG2695|consensus	425		96.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.57
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.53
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.52
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.42
KOG2041|consensus	1189		96.37
PRK02888	635	nitrous-oxide reductase; Validated	96.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.3
KOG0882|consensus	558		96.3
KOG1645|consensus	463		96.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.07
KOG1275|consensus	1118		96.06
PRK13616	591	lipoprotein LpqB; Provisional	96.05
KOG2314|consensus	698		96.02
PRK02888	635	nitrous-oxide reductase; Validated	96.0
KOG0309|consensus	1081		95.94
KOG2079|consensus	1206		95.6
PRK13616	591	lipoprotein LpqB; Provisional	95.42
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.39
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.33
KOG2395|consensus	644		95.3
KOG1832|consensus	1516		95.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.07
COG5167	776	VID27 Protein involved in vacuole import and degra	94.84
KOG2079|consensus	1206		94.75
KOG1645|consensus	463		94.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.47
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.39
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.26
KOG4649|consensus	354		93.93
KOG3621|consensus	726		93.9
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.61
KOG1008|consensus	783		93.61
PRK13684	334	Ycf48-like protein; Provisional	93.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.11
KOG2114|consensus	933		92.89
KOG3617|consensus	1416		92.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.66
KOG4649|consensus	354		92.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.24
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.19
PRK13684	334	Ycf48-like protein; Provisional	92.19
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.75
KOG1008|consensus	783		91.68
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	90.64
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	90.64
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.48
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.45
KOG2444|consensus	238		89.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.81
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.49
KOG2247|consensus	615		89.48
KOG1916|consensus	1283		88.97
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	88.62
KOG2444|consensus	238		88.32
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.28
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.3
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	86.38
KOG4460|consensus	741		86.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.02
COG3391	381	Uncharacterized conserved protein [Function unknow	85.82
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.43
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.15
COG3391	381	Uncharacterized conserved protein [Function unknow	84.85
KOG3630|consensus	1405		84.55
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	83.85
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	83.65
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	82.15
COG5276	370	Uncharacterized conserved protein [Function unknow	81.21

>KOG0272|consensus

Probab=99.96  E-value=1.9e-29  Score=217.37  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=154.0

Q ss_pred             ccccCCCCCEEEEecCC----eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPAG----YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~----~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~   75 (254)
                      +|.+|+..|.++.|.|.    .||||+.|+++++|+. +..+++.|.     +|...|..++|||+|++|+++|+|. .|
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-----gH~~RVs~VafHPsG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-----GHLARVSRVAFHPSGKFLGTASFDSTWR  286 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-----cchhhheeeeecCCCceeeecccccchh
Confidence            57899999999999983    6999999999999994 447776665     8999999999999999999999995 89


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEE
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEM  139 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~  139 (254)
                      +||+.++....     ....|...|.+|+|.|||..+++|+.|..-+|||+++++++.-                |-...
T Consensus       287 lWD~~tk~ElL-----~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lA  361 (459)
T KOG0272|consen  287 LWDLETKSELL-----LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLA  361 (459)
T ss_pred             hcccccchhhH-----hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEe
Confidence            99987655432     2345777999999999999999999999999999999887631                11234


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec-CcEEE-EEECCCcEEEEeccCCcee
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYL-VARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~-v~~~d~~i~i~dl~~~~~~  202 (254)
                      |.++|++++|||+..-   ..+.+...|...|..|.|+| .++|+ +|+.|++++||.-.+..++
T Consensus       362 Tgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~  423 (459)
T KOG0272|consen  362 TGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL  423 (459)
T ss_pred             ecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence            5667889999999876   34566666778899999998 45665 4777999999998876543

>KOG0279|consensus

Probab=99.96  E-value=1.6e-28  Score=202.30  Aligned_cols=202  Identities=18%  Similarity=0.252  Sum_probs=158.4

Q ss_pred             CccccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-EE
Q psy12788          1 GRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-IK   75 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-i~   75 (254)
                      ++|.+|+..|.+++++++  +|+|||.|++|++||.-|+|.-++.  .. .+.++|+|+.|+|+  ..+|++++.|+ +|
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~--~~-~~~~WVscvrfsP~~~~p~Ivs~s~DktvK  175 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH--ED-SHREWVSCVRFSPNESNPIIVSASWDKTVK  175 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEe--cC-CCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence            368899999999999984  8999999999999998888874442  11 23689999999998  67899999996 99


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      +||++..+-.     ...+.|.+.++.+++||||.++|+|+.||.+.+||+..++..+.                 +   
T Consensus       176 vWnl~~~~l~-----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-----------------l---  230 (315)
T KOG0279|consen  176 VWNLRNCQLR-----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-----------------L---  230 (315)
T ss_pred             EEccCCcchh-----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-----------------c---
Confidence            9997643321     33456778999999999999999999999999999865554322                 1   


Q ss_pred             CceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce-eeEeCCCCCCceeEEeeCceEEEEEeC-CeeEE
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL-SEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSI  233 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~  233 (254)
                                .+...|++++|+|+..++.+.++.+|+|||++++.+ .+++-+ -.|...-.-+..+++++|++ |.-++
T Consensus       231 ----------~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d-~~g~s~~~~~~~clslaws~dG~tLf  299 (315)
T KOG0279|consen  231 ----------EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD-GIGPSSKAGDPICLSLAWSADGQTLF  299 (315)
T ss_pred             ----------cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc-ccccccccCCcEEEEEEEcCCCcEEE
Confidence                      234689999999988888899999999999999875 344433 22221112234578899998 89999


Q ss_pred             EEeecCee
Q psy12788        234 IEYGNNEI  241 (254)
Q Consensus       234 ~~~~~~~~  241 (254)
                      .+|.++.|
T Consensus       300 ~g~td~~i  307 (315)
T KOG0279|consen  300 AGYTDNVI  307 (315)
T ss_pred             eeecCCcE
Confidence            99998874

>KOG0272|consensus

Probab=99.95  E-value=3.1e-27  Score=203.73  Aligned_cols=215  Identities=15%  Similarity=0.136  Sum_probs=167.9

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-EEEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-i~l~d   78 (254)
                      +-+.|+..+.|+.  +.|+|||.+|.++||+ .+++.+++|.     +|...+.++.|+|.  +..+|+++.|+ +++|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-----gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-----GHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-----ccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            3456888999987  4799999999999999 8888888776     89999999999997  66899999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEecCC-------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVSPS-------  145 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~-------  145 (254)
                      .+.....-     ....|..+|..++|+|+|++|+++|.|.+-++||+.++....      .+.|.+.|..++       
T Consensus       248 ~~~e~~l~-----~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  248 LSQETPLQ-----DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             cCCCcchh-----hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence            87544321     123456799999999999999999999999999998875321      345666666554       


Q ss_pred             ---eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc-----------eeeEeCCCCC
Q psy12788        146 ---QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL-----------LSEVLWPDSG  210 (254)
Q Consensus       146 ---~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~-----------~~~~~~~~~~  210 (254)
                         --+|||+.++.  +.+.+. .|-.+|.+|+|+|++. +++++.|++++||||+..+           ++.|++++..
T Consensus       323 lD~~~RvWDlRtgr--~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGR--CIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE  399 (459)
T ss_pred             ccchhheeecccCc--EEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence               35699999995  444444 4667999999999996 5568889999999999654           5688888323


Q ss_pred             CceeEEeeCceEEEEEeCCeeE
Q psy12788        211 RNEKFYFDNVTVCLVFNAGELS  232 (254)
Q Consensus       211 g~~~~~~~~~~~~~~~~~g~~~  232 (254)
                      |.-......+++..+|+.....
T Consensus       400 g~fL~TasyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTWS  421 (459)
T ss_pred             CeEEEEcccCcceeeecCCCcc
Confidence            3333344678899999985433

>KOG3616|consensus

Probab=99.95  E-value=6.5e-28  Score=220.41  Aligned_cols=199  Identities=43%  Similarity=0.746  Sum_probs=177.1

Q ss_pred             CCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc--ceeecCcee---cCCCC--cEe----EEEEecCC----------
Q psy12788         52 REFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS--VWEEQPNKT---IPNLY--TIS----ALSWKRDG----------  109 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~--~~~~~~~~~---~~~~~--~i~----~l~~spdG----------  109 (254)
                      ..++++.-+|.|+.++.++.|+ +++|+|.++++  .|++..++.   +.+.+  .++    .++|..||          
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqfdynd   94 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQFDYND   94 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccCcchhhccccc
Confidence            4567888889999999999997 99999987665  565432222   22322  344    68999999          


Q ss_pred             -------CeEE-------EeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE
Q psy12788        110 -------SRIA-------CGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA  175 (254)
Q Consensus       110 -------~~la-------~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~  175 (254)
                             +++.       +|+.+|.|.-+|+|.+|.+.+.+|+.||+.|+++++.|+.++   .+..+.++.|.+|..+.
T Consensus        95 qsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~---trt~l~s~~g~aidelk  171 (1636)
T KOG3616|consen   95 QSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSND---TRTNLISHKGLAIDELK  171 (1636)
T ss_pred             hhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCC---ceEeeeecCCcchhhhh
Confidence                   6666       789999999999999999999999999999999999999999   68899999999999999


Q ss_pred             EecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecCCcCCC
Q psy12788        176 IMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDSSE  253 (254)
Q Consensus       176 ~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  253 (254)
                      +.+.++|+++.++.++.|.|+++++.+++.|..++|+++|.|++.++||+||+|++.+++||.+..||+||||.++|.
T Consensus       172 ilgkdryli~~ts~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~vrte~~nph  249 (1636)
T KOG3616|consen  172 ILGKDRYLIAHTSESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSVRTEFMNPH  249 (1636)
T ss_pred             hccccceEEeeccccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhhhhhhcCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984

>KOG0271|consensus

Probab=99.94  E-value=1.3e-25  Score=191.96  Aligned_cols=145  Identities=16%  Similarity=0.217  Sum_probs=112.8

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|..+|.+++|+|+  .|+|||-|.++|+|| .+..++.+    .+ +|..+|.|++|+|||+.||+|+.|+ |++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t----~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT----CK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee----ec-CCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            46799999999999994  799999999999999 55567744    44 8999999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEec-----CCCeEEEeecCCcEEEEeeeeeeeEee--------------ce-e
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKR-----DGSRIACGGLCGSVELFESVLKRTIWK--------------GK-F  137 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-----dG~~la~g~~dg~v~iwd~~~~~~~~~--------------~~-~  137 (254)
                      |.....+..    .....|...|++++|.|     .+++||+++.||.|+|||+..++++..              +. +
T Consensus       185 dpktg~~~g----~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gl  260 (480)
T KOG0271|consen  185 DPKTGQQIG----RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGL  260 (480)
T ss_pred             cCCCCCccc----ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCce
Confidence            954433321    22345777899999955     789999999999999999877655431              11 2


Q ss_pred             EEEEecCCeEEEEeCCCC
Q psy12788        138 EMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~  155 (254)
                      ..+.+.|.++++|+...|
T Consensus       261 iySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             EEecCCCceEEEEEccch
Confidence            223344668888876654

>KOG0263|consensus

Probab=99.93  E-value=6.2e-25  Score=201.53  Aligned_cols=161  Identities=18%  Similarity=0.239  Sum_probs=131.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|.++|+.+.|+|+  +|+++|+|+++|+|. .+-.++..+.     +|..+|..+.|+|-|-|||+||.|+ .|+|
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-----GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-----GHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-----CCCcceeeEEecCCceEEEecCCCceeeee
Confidence            48899999999999994  799999999999999 4445553332     8999999999999999999999996 7999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      ........     .....|...|.+++|+|+..|+|+||.|.+||+||++++..                          
T Consensus       521 s~d~~~Pl-----RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--------------------------  569 (707)
T KOG0263|consen  521 STDHNKPL-----RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--------------------------  569 (707)
T ss_pred             ecccCCch-----hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--------------------------
Confidence            85432211     23345677899999999999999999999999999764432                          


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCce
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~  201 (254)
                         +.+.+.|..+|.+++|+|.++|++ |+.|+.|+|||+.+++.
T Consensus       570 ---VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  570 ---VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             ---EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence               222234557899999999999876 66799999999998764

>KOG0271|consensus

Probab=99.93  E-value=8e-25  Score=187.12  Aligned_cols=161  Identities=22%  Similarity=0.291  Sum_probs=126.4

Q ss_pred             cccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC-----------CCCCE----
Q psy12788          3 VVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS-----------PSGQA----   65 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s-----------Pdg~~----   65 (254)
                      +.+|+.+|+|+.|.. ++|+|||.|++||+|+ .+|.+++.|.     +|..+|+.++.|           |.|++    
T Consensus       243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lk-----GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELK-----GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhc-----ccchheeeeeccchhhhhccccccccccCCCh
Confidence            579999999999985 6899999999999999 7899886665     899999998776           44544    


Q ss_pred             ---------------------EEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788         66 ---------------------VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL  123 (254)
Q Consensus        66 ---------------------la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~i  123 (254)
                                           +++||+|. +.+|+-...++..    .+...|+..|+.+.|||||++||+++.|++|++
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKL  393 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch----hhhhchhhheeeEEECCCccEEEEeecccceee
Confidence                                 99999985 6677743222110    223457778999999999999999999999999


Q ss_pred             EeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCce
Q psy12788        124 FESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       124 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~  201 (254)
                      ||.++|+.+.      +                      ++. |-..|..|+++.+.++++ ++.|.|+++||+++.|+
T Consensus       394 W~g~tGk~la------s----------------------fRG-Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  394 WDGRTGKFLA------S----------------------FRG-HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             eeCCCcchhh------h----------------------hhh-ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence            9987665431      1                      111 225799999998888776 55689999999999885

>KOG0273|consensus

Probab=99.92  E-value=1.7e-23  Score=182.88  Aligned_cols=186  Identities=16%  Similarity=0.211  Sum_probs=143.4

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      ..|++|+|+.  +.||+|++||.+|+|+.+|.++.+|.     .|.++|.++.|+-+|.||++++.|+ +.+||...+..
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~-----~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG-----QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh-----ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            5799999985  68999999999999999999987765     6889999999999999999999996 77998633221


Q ss_pred             --------------ceee---------------------cC-ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         85 --------------VWEE---------------------QP-NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        85 --------------~~~~---------------------~~-~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                                    .|..                     .+ .....|.++|.+|.|+|.|++||+++.|++++||..-.
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence                          0100                     00 11234678999999999999999999999999998522


Q ss_pred             eee----------Eee---------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE
Q psy12788        129 KRT----------IWK---------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL  183 (254)
Q Consensus       129 ~~~----------~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~  183 (254)
                      ...          ++.               +.-.+....++.+++||+..+   ..+.....+..+|.+++|+|+++|+
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence            111          110               112345567889999999998   3333334556799999999999876


Q ss_pred             E-EECCCcEEEEeccCCce
Q psy12788        184 V-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       184 v-~~~d~~i~i~dl~~~~~  201 (254)
                      + ++.|+.+.||+..++++
T Consensus       468 AsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             EecCCCCeeEeccccchhe
Confidence            5 66799999999998875

>KOG0645|consensus

Probab=99.92  E-value=1.2e-22  Score=167.00  Aligned_cols=198  Identities=17%  Similarity=0.287  Sum_probs=145.9

Q ss_pred             CccccCCCCCEEEEecCC---eEEEEeCCCcEEEEeCC-CC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          1 GRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYESD-GR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~~-g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      +++.+|+..+..++|+|-   .|+|||.|+.||+|+.. +.   |...++   + +|...|.++||+|.|++||+||+|.
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld---~-~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD---D-GHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc---c-cchheeeeeeecCCCcEEEEeeccc
Confidence            367899999999999995   69999999999999944 43   332232   3 7999999999999999999999995


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-----------------eeEeec
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-----------------RTIWKG  135 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-----------------~~~~~~  135 (254)
                       +.||.  .....++.. ...-.|+.+|.+++||++|++||+++.|++|.||.+-..                 +.++..
T Consensus        84 t~~Iw~--k~~~efecv-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   84 TVVIWK--KEDGEFECV-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             eEEEee--cCCCceeEE-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence             66876  323444442 222346789999999999999999999999999986311                 111111


Q ss_pred             --eeEEEEecCCeEEEEeCCCCCceeeEEEEecCC--CceeEEEEecCc-EEEEEECCCcEEEEecc-------CCceee
Q psy12788        136 --KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG--YEITDVAIMGND-RYLVARTPDTLLLGDLH-------RNLLSE  203 (254)
Q Consensus       136 --~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~-------~~~~~~  203 (254)
                        ..+++++-|+++++|.-..++  .-....+..+  ..|-+++|.+.+ +++.++.|++++||-+.       ++++-.
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~  238 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYD  238 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEe
Confidence              234566778899999876332  2333333333  378899999877 67788889999999843       356667


Q ss_pred             EeCC
Q psy12788        204 VLWP  207 (254)
Q Consensus       204 ~~~~  207 (254)
                      ++|.
T Consensus       239 v~W~  242 (312)
T KOG0645|consen  239 VPWD  242 (312)
T ss_pred             eeec
Confidence            8886

>KOG0286|consensus

Probab=99.92  E-value=1.4e-22  Score=168.15  Aligned_cols=217  Identities=16%  Similarity=0.184  Sum_probs=154.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|...|+++.|+++  +|+|+|+|+.+.||| .+.+....+..     ...+|..+||+|+|+++|.|+.|+ .-||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----PSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----CceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            47899999999999874  799999999999999 67766655542     246999999999999999999996 7799


Q ss_pred             EecCCCcceeecCce-ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--ce----eEE--------EEe
Q psy12788         78 AWSPSKSVWEEQPNK-TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--GK----FEM--------IYV  142 (254)
Q Consensus        78 d~~~~~~~~~~~~~~-~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--~~----~~~--------~~~  142 (254)
                      +++...........+ ...|.+.+.++.|-+|+ .|++|+.|.+..+||+++++....  +.    ..+        +|+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            987542211111122 23467889999998865 677999999999999998765432  11    111        233


Q ss_pred             ---cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCce-------------eeEe
Q psy12788        143 ---SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLL-------------SEVL  205 (254)
Q Consensus       143 ---~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~-------------~~~~  205 (254)
                         .|...++||++.+.   .......+...|++|.|.|++ .|++++.|.+++++||+..+-             ..+.
T Consensus       204 Sg~cD~~aklWD~R~~~---c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~  280 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQ---CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA  280 (343)
T ss_pred             ecccccceeeeeccCcc---eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence               35578899999883   222222334579999999987 577788899999999998642             2444


Q ss_pred             CCCCCCceeEEeeCceEEEEEeC
Q psy12788        206 WPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      |+ ..|+-.|--.++..|-+|+.
T Consensus       281 FS-~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  281 FS-KSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             Ec-ccccEEEeeecCCceeEeec
Confidence            44 33444443344555555555

>KOG0315|consensus

Probab=99.91  E-value=1.4e-22  Score=164.99  Aligned_cols=201  Identities=13%  Similarity=0.193  Sum_probs=148.6

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecC-C
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIP-N   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~-~   96 (254)
                      +|+|+|.|.+||+|. .+|.|.+++.|.     +..|+.+...||+++||+|+...||+||++.....    +...++ +
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~-----dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~----Pv~t~e~h   82 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHP-----DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN----PVATFEGH   82 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecC-----ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC----ceeEEecc
Confidence            799999999999999 899999999742     35799999999999999999999999998765432    123333 4


Q ss_pred             CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec--------------eeEE-EEecCCeEEEEeCCCCCceeeE
Q psy12788         97 LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG--------------KFEM-IYVSPSQVLVKPLSGESKGRGV  161 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~--------------~~~~-~~~~~~~~~v~~~~~~~~~~~~  161 (254)
                      ...|+++.|..||+++++|+.||+++|||++....+..-              +-++ ..-..+.+++||+....  ...
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~--c~~  160 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS--CTH  160 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc--ccc
Confidence            578999999999999999999999999999764322111              1111 11223579999998763  334


Q ss_pred             EEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCc-----------------eeeEeCCCCCCceeEEeeCceEE
Q psy12788        162 ILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNL-----------------LSEVLWPDSGRNEKFYFDNVTVC  223 (254)
Q Consensus       162 ~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~  223 (254)
                      .+.+..+..|+++.+.+++.+++|.+ .+.+++|++-.+.                 +.....+ |+++-.-....+..+
T Consensus       161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv  239 (311)
T KOG0315|consen  161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTV  239 (311)
T ss_pred             ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceE
Confidence            45455566899999999998887765 5699999988653                 1233344 544444444667788


Q ss_pred             EEEeCCee
Q psy12788        224 LVFNAGEL  231 (254)
Q Consensus       224 ~~~~~g~~  231 (254)
                      .+|+-..+
T Consensus       240 ~iwn~~~~  247 (311)
T KOG0315|consen  240 KIWNTDDF  247 (311)
T ss_pred             EEEecCCc
Confidence            88888655

>KOG0266|consensus

Probab=99.91  E-value=2.1e-22  Score=184.66  Aligned_cols=187  Identities=16%  Similarity=0.239  Sum_probs=142.5

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      .+.+|...|..++|+++  .|++++.|.+||||| +. +.+++++.     +|...|++++|+|+|+++++|+.|+ +|+
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-----gH~~~v~~~~f~p~g~~i~Sgs~D~tvri  272 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-----GHSTYVTSVAFSPDGNLLVSGSDDGTVRI  272 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-----CCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence            35689999999999984  799999999999999 34 57887775     8999999999999999999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE--e------------------ece
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI--W------------------KGK  136 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~--~------------------~~~  136 (254)
                      ||.......     .....|...|++++|+|||++|++++.||.|++||+..+..+  .                  ++.
T Consensus       273 Wd~~~~~~~-----~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~  347 (456)
T KOG0266|consen  273 WDVRTGECV-----RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK  347 (456)
T ss_pred             EeccCCeEE-----EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence            997542211     233457789999999999999999999999999999877621  1                  122


Q ss_pred             eEEEEecCCeEEEEeCCCCCceeeEEEEecCCC--ceeEEEEecCcEEE-EEECCCcEEEEeccCCc
Q psy12788        137 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY--EITDVAIMGNDRYL-VARTPDTLLLGDLHRNL  200 (254)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~  200 (254)
                      |.++...++++++|++..+.  .......+...  .+.....++.++++ +++.|..+++||+.++.
T Consensus       348 ~ll~~~~d~~~~~w~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  348 YLLSASLDRTLKLWDLRSGK--SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             EEEEecCCCeEEEEEccCCc--ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence            34444556789999998774  22333333332  34444445566654 57789999999999754

>KOG0279|consensus

Probab=99.91  E-value=2.2e-22  Score=166.10  Aligned_cols=187  Identities=14%  Similarity=0.154  Sum_probs=144.7

Q ss_pred             CccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe------CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          1 GRVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE------SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd------~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      +.|.+|+..|.+++-.+   +.|++++.|.++.+|+      ..|.+++.|.     ||.+.|+.++.+|||++..++|.
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEccCCceEEeccc
Confidence            35789999999999864   6899999999999996      2366776665     89999999999999999999999


Q ss_pred             Cc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee--E-ee-------------
Q psy12788         72 DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT--I-WK-------------  134 (254)
Q Consensus        72 d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~--~-~~-------------  134 (254)
                      |+ +|+||+......     .....|..-|.+++||||.+.|++|+.|.++.+|++.....  + ..             
T Consensus        84 D~~lrlWDl~~g~~t-----~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   84 DGTLRLWDLATGEST-----RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             cceEEEEEecCCcEE-----EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            96 899998654321     34556778899999999999999999999999999743211  0 01             


Q ss_pred             ---ceeEEEEecCCeEEEEeCCCCCceeeEEEEec--CCCceeEEEEecCcEEEE-EECCCcEEEEeccCCcee
Q psy12788        135 ---GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ--YGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       135 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~  202 (254)
                         .++.+...-|..+++||+.+-.     ....+  +.+-++.+++|||+.+.+ ++.|+.+++|||..++..
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcc-----hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence               1122333446689999998762     12222  334699999999997654 778999999999887753

>KOG0263|consensus

Probab=99.91  E-value=7.4e-24  Score=194.48  Aligned_cols=158  Identities=18%  Similarity=0.275  Sum_probs=129.6

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .||..||..+.|+|.  ++||||.|++.++|. -.-.+++.|.     +|...|.|++|||+..|+|+||.|+ +|+||.
T Consensus       490 ~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv  564 (707)
T KOG0263|consen  490 KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV  564 (707)
T ss_pred             cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-----ccccccceEEECCcccccccCCCCceEEEEEc
Confidence            489999999999995  799999999999998 4456666664     8889999999999999999999995 999998


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      .+....     .....|..+|++|+|||+|++||+|+.||.|.+||+..++...                          
T Consensus       565 ~~G~~V-----RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------------------------  613 (707)
T KOG0263|consen  565 STGNSV-----RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------------------------  613 (707)
T ss_pred             CCCcEE-----EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------------------------
Confidence            765432     2345688999999999999999999999999999986544321                          


Q ss_pred             eEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        160 GVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                        .++. +.+.|.++.|+.++. +++++.|+++++||+....
T Consensus       614 --~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  614 --QLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             --hhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence              1112 246799999998875 5667889999999988543

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=2.8e-21  Score=177.96  Aligned_cols=188  Identities=9%  Similarity=0.101  Sum_probs=134.6

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCC-------EEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEe
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGR-------VHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGS   70 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~-------~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs   70 (254)
                      +.+|...|.+++|+|   +.|++||.|++|++|| .++.       ++..+    . +|...|.+++|+|++ ++||+|+
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L----~-gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL----Q-GHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe----c-CCCCcEEEEEeCcCCCCEEEEEe
Confidence            568999999999997   3799999999999999 4432       34333    3 799999999999986 6999999


Q ss_pred             CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----c---------
Q psy12788         71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----G---------  135 (254)
Q Consensus        71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~---------  135 (254)
                      .|+ ++|||+......     .....|...|++++|+|||++||+|+.||.|++||.+.++....     +         
T Consensus       146 ~DgtVrIWDl~tg~~~-----~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        146 ADMVVNVWDVERGKAV-----EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             CCCEEEEEECCCCeEE-----EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence            996 999997643321     11223567899999999999999999999999999876654321     0         


Q ss_pred             ---eeEEEE----ecCCeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEecCcEE-EEEE-CCCcEEEEeccCCcee
Q psy12788        136 ---KFEMIY----VSPSQVLVKPLSGESKGRGVILKS-QYGYEITDVAIMGNDRY-LVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       136 ---~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~~~~~-~v~~-~d~~i~i~dl~~~~~~  202 (254)
                         ...++.    ..++++.+||+.+..  ..+.... .....+....|++++.+ ++++ .|+.|++||+..+++.
T Consensus       221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             CCCCeEEEEecCCCCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence               011211    135789999998653  2222221 12223445566776654 4555 4999999999988753

>KOG0286|consensus

Probab=99.90  E-value=7.4e-22  Score=163.94  Aligned_cols=181  Identities=14%  Similarity=0.149  Sum_probs=147.0

Q ss_pred             ccccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~   77 (254)
                      .|.+|++-+.++.|-+ +.|+|+|-|.+..+|| ++|+.++.|.     +|...|.+++++| +++.+++|+-|+ .+||
T Consensus       140 ~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~-----GH~gDV~slsl~p~~~ntFvSg~cD~~aklW  214 (343)
T KOG0286|consen  140 ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH-----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW  214 (343)
T ss_pred             eecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec-----CCcccEEEEecCCCCCCeEEecccccceeee
Confidence            5789999999999976 4799999999999999 8999998885     8999999999999 999999999996 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--e----------------ceeEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--K----------------GKFEM  139 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--~----------------~~~~~  139 (254)
                      |.......     ..+..|+.-|++|.|.|+|.-+|+|+.|++.|+||++..+.+.  .                +++++
T Consensus       215 D~R~~~c~-----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  215 DVRSGQCV-----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             eccCccee-----EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence            97644321     2245577899999999999999999999999999998754331  1                12222


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                      .--.+-++.+||.-.+   .++-+-..|+.+|.++.++|++. +.+++.|.+++||.
T Consensus       290 agy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            2234567889998877   45555567788999999999885 55677899999994

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=1.4e-20  Score=174.89  Aligned_cols=193  Identities=9%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCE-EEEe---eecCCCCCCCCEEEEEECCCCCE-EEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRV-HRIF---DYTAPHYKEREFTVACSSPSGQA-VVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~-~~~~---~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d   72 (254)
                      .+.+|..+|.+++|+|   ++|+|||.|++|+||| .++.. ...+   ...+. +|...|.+++|+|++.. ||+|+.|
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCC
Confidence            3678999999999997   3799999999999999 54321 1100   01123 78899999999999986 5788988


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----c-----------
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----G-----------  135 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~-----------  135 (254)
                      + +++||+......      ..+.+...|.+++|+|||++|++++.|+.|+|||.+.++....     +           
T Consensus       148 gtIrIWDl~tg~~~------~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        148 SFVNIWDIENEKRA------FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             CeEEEEECCCCcEE------EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            5 999997654322      1233456799999999999999999999999999876543321     0           


Q ss_pred             -----eeEEEEecC----CeEEEEeCCCCCceeeEEEEecCCCceeEE--EE-ecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        136 -----KFEMIYVSP----SQVLVKPLSGESKGRGVILKSQYGYEITDV--AI-MGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       136 -----~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i--~~-~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                           .+.++...+    .++.+||+....  ..+..... ......+  .+ .+++. |++|..|++|++|++..+.+.
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--~pl~~~~l-d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~  298 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTT--SALVTMSI-DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIR  298 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCC--CceEEEEe-cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEE
Confidence                 122222222    379999998532  22222111 1111222  12 22344 667778999999999887654


Q ss_pred             eE
Q psy12788        203 EV  204 (254)
Q Consensus       203 ~~  204 (254)
                      .+
T Consensus       299 ~l  300 (568)
T PTZ00420        299 KV  300 (568)
T ss_pred             ee
Confidence            33

>KOG0266|consensus

Probab=99.88  E-value=1.2e-20  Score=173.14  Aligned_cols=188  Identities=19%  Similarity=0.228  Sum_probs=141.6

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      |...|.++.|+++  .|++++.|+.+++|+ ..++  .++.+    . +|...|+.++|+|||+++++|+.|. +|+||.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l----~-~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL----S-GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc----c-ccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            3678899999874  799999999999999 4555  44333    3 7999999999999999999999995 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEec
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYVS  143 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~~  143 (254)
                      .......    .....|...|++++|+|+|+++++|+.|++|+|||++++++..                ++.+..+...
T Consensus       233 ~~~~~~~----~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  233 KDDGRNL----KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             cCCCeEE----EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence            3221211    2234688899999999999999999999999999998765432                1233445556


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCC-ceeEEEEecCcEEEE-EECCCcEEEEeccCCcee
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGY-EITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~-~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~  202 (254)
                      ++.+++||+.++.......+...... .+..+.|++++.|+. ++.|+++++||+..+++.
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            78999999999831001122222222 689999999987765 555779999999988653

>KOG0318|consensus

Probab=99.88  E-value=2.1e-20  Score=165.54  Aligned_cols=195  Identities=13%  Similarity=0.139  Sum_probs=143.2

Q ss_pred             CccccCCCCCEEEEecCC---eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          1 GRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      |.+.+|+..|.+++|-|.   +|+|||+|++|.+++  |-+. .|..... .|..-|+++.|+|||+.||+.+.|+ +.+
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe--GPPF-KFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE--GPPF-KFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEee--CCCe-eeeeccc-ccccceeeEEECCCCCeEEEecCCccEEE
Confidence            457899999999999873   699999999999997  2121 2333334 6888999999999999999999995 889


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------------ceeEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------------GKFEM  139 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------------~~~~~  139 (254)
                      ||=.......+.  .-...|.+.|.+|+||||++.+++++.|.+++|||+.++++...                 ....+
T Consensus       217 yDGktge~vg~l--~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI  294 (603)
T KOG0318|consen  217 YDGKTGEKVGEL--EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI  294 (603)
T ss_pred             EcCCCccEEEEe--cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence            994333322221  11345788999999999999999999999999999876654432                 11233


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCceeeE
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      +.+-.+.+-..+...+   ....+.+.|.-.|+++.+++++.+ +.|+.|+.|.-||+.+|....+
T Consensus       295 tVSl~G~in~ln~~d~---~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  295 TVSLSGTINYLNPSDP---SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             EEEcCcEEEEecccCC---ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence            4444455555555555   233344455568999999998764 6788899999999998876544

>KOG0316|consensus

Probab=99.88  E-value=9e-21  Score=153.55  Aligned_cols=185  Identities=18%  Similarity=0.224  Sum_probs=151.9

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      |-.|..+|.++.|+-  ++.++||.|++||+|| ..|.+++++.     +|..+|..++.+.|...||+++.|+ +.+||
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-----ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-----GHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-----CCCceeeeccccccccccccCCCCceEEEEE
Confidence            457889999999974  6999999999999999 7899998765     8989999999999999999999997 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------ec-------eeE-EEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------KG-------KFE-MIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------~~-------~~~-~~~~  142 (254)
                      +++.+..     .+...|...|+++.|+.+...+++|+.|.++++||.+++....        ++       ..+ +.-+
T Consensus        88 V~TGkv~-----Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS  162 (307)
T KOG0316|consen   88 VNTGKVD-----RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGS  162 (307)
T ss_pred             cccCeee-----eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeec
Confidence            8765532     2345677899999999999999999999999999998764321        11       112 3445


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      -|++++.+|+..|+     .....+|++|+++.|++++.. ++++-++++++-|-++|++.
T Consensus       163 ~DGtvRtydiR~G~-----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGT-----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             cCCcEEEEEeecce-----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence            68899999999883     333457899999999998875 55666999999999999864

>KOG0291|consensus

Probab=99.88  E-value=2.2e-20  Score=171.20  Aligned_cols=195  Identities=14%  Similarity=0.172  Sum_probs=143.6

Q ss_pred             CCCEEEEec--CCeEEEEeCC-CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          8 VPPYALSWP--AGYILAAGSD-RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         8 ~~v~~l~w~--~~~l~s~s~D-~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      .++..++|+  .+.||-|+.. +.+-||+ ....-+    ...+ +|-..++++++||||+++|+|+.|+ ++|||....
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV----lKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg  382 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV----LKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG  382 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeecccee----eecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence            567889998  4778877653 6899999 443333    2334 8889999999999999999999995 999995432


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEecCC-----------
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVSPS-----------  145 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~-----------  145 (254)
                      -..     ....+|...|+.+.|+.+|+-+.+.+.||+|+.||+.-.|...      .-+|....++++           
T Consensus       383 fC~-----vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~  457 (893)
T KOG0291|consen  383 FCF-----VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS  457 (893)
T ss_pred             eEE-----EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence            221     2345688899999999999999999999999999985433221      122333333221           


Q ss_pred             -eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC--c---------eeeEeCCCCCCc
Q psy12788        146 -QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN--L---------LSEVLWPDSGRN  212 (254)
Q Consensus       146 -~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~--~---------~~~~~~~~~~g~  212 (254)
                       .+.+|++.+|   +.+-+-+.|.++|.++.|+|.+.. +.++.|+|+++||+-..  .         +..+.+. |+|+
T Consensus       458 F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfr-PdG~  533 (893)
T KOG0291|consen  458 FEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFR-PDGK  533 (893)
T ss_pred             EEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEc-CCCC
Confidence             5789999999   566666777889999999998764 55778999999998765  2         2355666 6666


Q ss_pred             eeEE
Q psy12788        213 EKFY  216 (254)
Q Consensus       213 ~~~~  216 (254)
                      +.-.
T Consensus       534 elaV  537 (893)
T KOG0291|consen  534 ELAV  537 (893)
T ss_pred             eEEE
Confidence            5443

>KOG0315|consensus

Probab=99.88  E-value=2.6e-20  Score=151.84  Aligned_cols=188  Identities=17%  Similarity=0.185  Sum_probs=142.0

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|.+-|.++.|..  ..++|||+|+++|||| +.-.+.+.+      .|..+|+++..+|+...|.+|..++ ||+||
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            568999999999964  5799999999999999 665555544      4668999999999998899998885 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee--------------------Ee--ece
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT--------------------IW--KGK  136 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~--------------------~~--~~~  136 (254)
                      +......-+.    ..+...+|.+++..|||++++.+...|...+|++..+..                    ++  +.+
T Consensus       153 l~~~~c~~~l----iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  153 LGENSCTHEL----IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             ccCCcccccc----CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence            7543221111    112235899999999999999999999999999743211                    11  345


Q ss_pred             eEEEEecCCeEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceee
Q psy12788        137 FEMIYVSPSQVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~  203 (254)
                      |..+.+++.+++||....-   .+..+. ..+...+-.-+||.+++|++ |++|.++++||++.++...
T Consensus       229 ~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             EEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            6778888889999988754   112221 12223799999999998876 7778999999999998643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=3.3e-19  Score=149.04  Aligned_cols=187  Identities=14%  Similarity=0.210  Sum_probs=140.4

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|..+|.+++|+|  +.|++++.|+.+++|+ .+++....+.     .|...+..+.|+|+++++++++.|+ +++|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-----cCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            5678999999999998  5799999999999999 5666554443     6777899999999999999999885 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~  141 (254)
                      ++.......     ....+...|.++.|+|+++++++++.+|.+.+||...++....                +.+.++.
T Consensus        79 ~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  153 (289)
T cd00200          79 DLETGECVR-----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS  153 (289)
T ss_pred             EcCcccceE-----EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence            976432211     1223455899999999999999998899999999864432211                1122222


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCce
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ..++.+.+||+.++.   .......+...|..+.+++++ .+++++.++.+++||+.+++.
T Consensus       154 ~~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         154 SQDGTIKLWDLRTGK---CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             cCCCcEEEEEccccc---cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence            237789999998663   233333445589999999987 566777799999999987654

>KOG0283|consensus

Probab=99.87  E-value=4.3e-21  Score=177.48  Aligned_cols=165  Identities=18%  Similarity=0.324  Sum_probs=126.5

Q ss_pred             ccccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~   77 (254)
                      .+.||...|..|+|+. ++|+|+|.|+|||+|+ ...+|+..|.      |.+-|||++|+| |-+||++||.|+ +|||
T Consensus       364 ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~------HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS------HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             hhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe------cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            3679999999999997 5899999999999999 6668998884      778899999999 678999999995 9999


Q ss_pred             EecCCCc-ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         78 AWSPSKS-VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        78 d~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      ++...+- .|.       .-..-|++++|+|||++.++|+.+|.+++|++.--++..          +.++.+..-..  
T Consensus       438 sI~d~~Vv~W~-------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~----------~~~I~~~~~Kk--  498 (712)
T KOG0283|consen  438 SISDKKVVDWN-------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS----------DFHIRLHNKKK--  498 (712)
T ss_pred             ecCcCeeEeeh-------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE----------eeeEeeccCcc--
Confidence            9753221 122       123579999999999999999999999999975333321          11211111111  


Q ss_pred             ceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCCc
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~~  200 (254)
                               ..+..|+.++|.|.+  +.+|.+.|..|+|+|++...
T Consensus       499 ---------~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~  535 (712)
T KOG0283|consen  499 ---------KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD  535 (712)
T ss_pred             ---------ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence                     113389999998644  59999999999999996554

>KOG0295|consensus

Probab=99.87  E-value=5.3e-21  Score=162.80  Aligned_cols=215  Identities=12%  Similarity=0.126  Sum_probs=160.5

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ++.+|..+|..+-+.|+  ..+++++|.+|++|| .+|++.+.+.     +|.+.+..++|+-.|+++|++|.|- +++|
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-----GHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-----GHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-----ccccceeEEEEecCccEEEecCCccchhhe
Confidence            67899999999999996  577888999999999 8999876554     8999999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~  141 (254)
                      |....   .+.. ...+.|...|.++.|-|-|.+|++++.|.+|+.||+.++-+.+.                +....+.
T Consensus       178 d~~~~---~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  178 DFDTF---FRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             eHHHH---HHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence            96532   1111 22355677899999999999999999999999999876654431                2222333


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC---------------cEE-EEEECCCcEEEEeccCCcee---
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN---------------DRY-LVARTPDTLLLGDLHRNLLS---  202 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~---------------~~~-~v~~~d~~i~i~dl~~~~~~---  202 (254)
                      ..+.++++|-++++.  .+..++ .+.++|.+|+|.|.               +++ .+++.|++|++||+.++++.   
T Consensus       254 s~dqtl~vW~~~t~~--~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL  330 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQ--CKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL  330 (406)
T ss_pred             CCCceEEEEEeccch--hhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence            456789999998874  344443 45678999998542               134 45788999999999999753   


Q ss_pred             --------eEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEee
Q psy12788        203 --------EVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYG  237 (254)
Q Consensus       203 --------~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  237 (254)
                              ++.++ |.|+-.+        .+.+++.+.+.+|.
T Consensus       331 ~ghdnwVr~~af~-p~Gkyi~--------ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  331 VGHDNWVRGVAFS-PGGKYIL--------SCADDKTLRVWDLK  364 (406)
T ss_pred             ecccceeeeeEEc-CCCeEEE--------EEecCCcEEEEEec
Confidence                    55666 6555333        33444555555554

>KOG0281|consensus

Probab=99.87  E-value=1.8e-21  Score=165.04  Aligned_cols=183  Identities=12%  Similarity=0.140  Sum_probs=146.5

Q ss_pred             CccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          1 GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      ++|.||++.|.+|.++...|++||.|.+|+||| .+|++++++-     .|-..|-.+.|+  ..+++++|.|+ +++||
T Consensus       231 ~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli-----hHceaVLhlrf~--ng~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI-----HHCEAVLHLRFS--NGYMVTCSKDRSIAVWD  303 (499)
T ss_pred             HhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh-----hhcceeEEEEEe--CCEEEEecCCceeEEEe
Confidence            368899999999999999999999999999999 8999997764     577789999997  45889999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE--------------eeceeEEEEecC
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI--------------WKGKFEMIYVSP  144 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~--------------~~~~~~~~~~~~  144 (254)
                      .......- . +.....|...|+.+.|  |.++|++++.|.++++|++.+.++.              +.+++.+.-++|
T Consensus       304 m~sps~it-~-rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSD  379 (499)
T KOG0281|consen  304 MASPTDIT-L-RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD  379 (499)
T ss_pred             ccCchHHH-H-HHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCC
Confidence            75433110 0 1122456778999999  6679999999999999998765442              355677778899


Q ss_pred             CeEEEEeCCCCCceeeEEEEecCCC--ceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQYGY--EITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      .++++||...|.     .|+-..|+  -|.+|.|. +.+.+.+..|++|+|||+.++.
T Consensus       380 ntIRlwdi~~G~-----cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  380 NTIRLWDIECGA-----CLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             ceEEEEeccccH-----HHHHHhchHHhhhheeec-CceeeeccccceEEEEeccccc
Confidence            999999999984     33333344  58999998 5788899999999999998764

>KOG0265|consensus

Probab=99.87  E-value=6.2e-20  Score=153.00  Aligned_cols=185  Identities=16%  Similarity=0.245  Sum_probs=142.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+.+|++.|+.+.|+|+  .|||||.|+.|.+|+..|.|..-  ..++ +|.+.|..+.|.+|+..|.+++.|+ ++.||
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~--~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF--WVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce--eeec-cccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            46799999999999994  79999999999999965554322  2344 8999999999999999999999995 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEee--ceeEEEEec------------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWK--GKFEMIYVS------------  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~--~~~~~~~~~------------  143 (254)
                      ..+.+..     .+...|..-|+++.=+.-|. ++.+|+.||++++||++.+..+..  .+|+++.++            
T Consensus       119 ~~tG~~~-----rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  119 AETGKRI-----RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             cccceee-----ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence            7665543     23345666788888444454 567888999999999987654432  355554332            


Q ss_pred             -CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEecc
Q psy12788        144 -PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLH  197 (254)
Q Consensus       144 -~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~  197 (254)
                       ++.+++||+..+.   -..+.+.+.++|+.+..++++.++. -+-|.++++||++
T Consensus       194 Idn~ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  194 IDNDIKVWDLRKND---GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             ccCceeeeccccCc---ceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence             4578999998773   4455556678999999999887655 5669999999988

>KOG0282|consensus

Probab=99.86  E-value=4.5e-21  Score=168.13  Aligned_cols=142  Identities=15%  Similarity=0.230  Sum_probs=115.3

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      +.+|+..|.++.|.|   .+|+++|.|+.|+|||  .+++|+++|.     +|..+|..++|+++|..|.++|+|+ +++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-----gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-----GHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-----cchhhhhhhhccccCCeeeeeecceeeee
Confidence            568999999999988   4799999999999999  4589998886     8999999999999999999999997 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEe----------------eceeEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIW----------------KGKFEM  139 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~  139 (254)
                      ||..+.+..      ..+.....++++.|+||+ +.+++|+.|+.|+-||+++++...                .++.-+
T Consensus       285 wDtETG~~~------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  285 WDTETGQVL------SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI  358 (503)
T ss_pred             eccccceEE------EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence            996543321      223344578999999999 899999999999999998776431                222334


Q ss_pred             EEecCCeEEEEeCCCC
Q psy12788        140 IYVSPSQVLVKPLSGE  155 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~  155 (254)
                      +.+.++.++||+...+
T Consensus       359 ssSDdks~riWe~~~~  374 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIP  374 (503)
T ss_pred             eeccCccEEEEEcCCC
Confidence            5556778999977544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=3.3e-19  Score=173.92  Aligned_cols=188  Identities=15%  Similarity=0.181  Sum_probs=135.1

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCC-----CEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYESDG-----RVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g-----~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~   73 (254)
                      .+..|...|.+++|++  ++|++||.|++|+|||.+.     ..........  .+...+.+++|+| ++.+||+++.|+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCC
Confidence            3556999999999997  4799999999999998321     1100000011  2345789999987 478999999996


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe----------------ec
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW----------------KG  135 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~----------------~~  135 (254)
                       +++||+......     .....|...|++++|+| ||.+|++|+.||.|++||+..++...                .+
T Consensus       556 ~v~lWd~~~~~~~-----~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g  630 (793)
T PLN00181        556 VVQVWDVARSQLV-----TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESG  630 (793)
T ss_pred             eEEEEECCCCeEE-----EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCC
Confidence             999997543221     12235677899999997 89999999999999999987554321                12


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                      .+.++...++.+++||+.++.  ........+...|..+.|.....+++++.|++++|||+..
T Consensus       631 ~~latgs~dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCC--ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence            233444567789999998763  2222223455689999998545677888999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=2.1e-19  Score=175.32  Aligned_cols=184  Identities=12%  Similarity=0.119  Sum_probs=135.3

Q ss_pred             CCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEe
Q psy12788          6 HPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         6 h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~   79 (254)
                      +...+.+++|++   ++|++++.|++|++|| .+++.+..+.     +|...|++++|+| ++.+|++|+.|+ +++||+
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            345788999975   4799999999999999 6777776554     7889999999997 789999999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEe-cCCCeEEEeecCCcEEEEeeeeeee-Ee---------------eceeEEEEe
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWK-RDGSRIACGGLCGSVELFESVLKRT-IW---------------KGKFEMIYV  142 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdG~~la~g~~dg~v~iwd~~~~~~-~~---------------~~~~~~~~~  142 (254)
                      .....      ...+.+...|.++.|+ ++|.+||+|+.||.|++||+...+. ..               .+.+.++..
T Consensus       606 ~~~~~------~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s  679 (793)
T PLN00181        606 NQGVS------IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS  679 (793)
T ss_pred             CCCcE------EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEE
Confidence            54332      1223344579999995 5799999999999999999865321 10               123345666


Q ss_pred             cCCeEEEEeCCCCCc---eeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc
Q psy12788        143 SPSQVLVKPLSGESK---GRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL  200 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~---~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~  200 (254)
                      .++.+++||+..+..   ...+.....+...+..+.|++++.++ +++.|++++||+.....
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence            788999999975310   01121222344578899999877665 56679999999987653

>KOG0292|consensus

Probab=99.86  E-value=4.6e-20  Score=171.53  Aligned_cols=187  Identities=12%  Similarity=0.160  Sum_probs=142.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ++-.|.++|..++|.|+  .++|||.|.+|+||+ .+-+|+    +++. +|.+-|..+.||+.-..++++|+|. ||||
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl----ftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL----FTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh----hhhc-cccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            46689999999999984  799999999999999 777888    5555 9999999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-eeeE-e----------------------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-KRTI-W----------------------  133 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~-~----------------------  133 (254)
                      +|.+++..-     ....|...|.|..|+|....++++|.|.+||+||+.- ++.. .                      
T Consensus       121 Nwqsr~~ia-----vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  121 NWQSRKCIA-----VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eccCCceEE-----EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            998766542     2345677899999999999999999999999999741 1100 0                      


Q ss_pred             -------ec--------ee------EEEEecCCeEEEEeCCCCCceeeEEEEecCC--CceeEEEEecCc-EEEEEECCC
Q psy12788        134 -------KG--------KF------EMIYVSPSQVLVKPLSGESKGRGVILKSQYG--YEITDVAIMGND-RYLVARTPD  189 (254)
Q Consensus       134 -------~~--------~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~-~~~v~~~d~  189 (254)
                             +|        .|      .+...+|.++++|.+....   .-.+.+..|  ..|.++-|+|.. -.+..+.|+
T Consensus       196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK---aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---ceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence                   00        01      1122346688888875431   112222223  479999999854 456778899


Q ss_pred             cEEEEeccCCce
Q psy12788        190 TLLLGDLHRNLL  201 (254)
Q Consensus       190 ~i~i~dl~~~~~  201 (254)
                      +|+|||+..++.
T Consensus       273 sirVwDm~kRt~  284 (1202)
T KOG0292|consen  273 SIRVWDMTKRTS  284 (1202)
T ss_pred             cEEEEecccccc
Confidence            999999997763

>KOG0318|consensus

Probab=99.85  E-value=5.7e-19  Score=156.45  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=100.8

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +..|+.-|.++.++|+  +++|+|.|++|.+|| .+|+.+..|.- .+ +|.+.|.+++|+||++.|++.|.|+ +||||
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~-aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SD-AHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CC-CccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            4678899999999995  799999999999999 99999887753 34 7999999999999999999999995 99999


Q ss_pred             ecCCCc-----------------ceeecCc---------------------eecCCCCcEeEEEEecCCCeEEEeecCCc
Q psy12788         79 WSPSKS-----------------VWEEQPN---------------------KTIPNLYTISALSWKRDGSRIACGGLCGS  120 (254)
Q Consensus        79 ~~~~~~-----------------~~~~~~~---------------------~~~~~~~~i~~l~~spdG~~la~g~~dg~  120 (254)
                      ++....                 .|+....                     ....|...|++++.+|||++|.+|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            875431                 1211000                     00124558999999999999999999999


Q ss_pred             EEEEeee
Q psy12788        121 VELFESV  127 (254)
Q Consensus       121 v~iwd~~  127 (254)
                      |.-||..
T Consensus       344 I~~W~~~  350 (603)
T KOG0318|consen  344 INSWDSG  350 (603)
T ss_pred             EEEEecC
Confidence            9999964

>KOG0293|consensus

Probab=99.85  E-value=3.7e-20  Score=159.96  Aligned_cols=183  Identities=19%  Similarity=0.339  Sum_probs=141.3

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|..+|.-+.|+|+  +|++|+.|..+++|| .+|.+...+..    ++...+.+++|-|||..+++|+.|+ +..|
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w  339 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWCPDGFRFVTGSPDRTIIMW  339 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----CcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence            57899999999999994  899999999999999 78887755431    4557899999999999999999996 7889


Q ss_pred             EecCCC-cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE---------------eeceeEEEE
Q psy12788         78 AWSPSK-SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI---------------WKGKFEMIY  141 (254)
Q Consensus        78 d~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~---------------~~~~~~~~~  141 (254)
                      |.+-.. ..|+..      ....|.+++.++||+++.+.+.|..+++++.+++..+               .+++|.++.
T Consensus       340 dlDgn~~~~W~gv------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lvn  413 (519)
T KOG0293|consen  340 DLDGNILGNWEGV------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVN  413 (519)
T ss_pred             cCCcchhhccccc------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEE
Confidence            865321 234321      1246999999999999999999999999997543211               134566777


Q ss_pred             ecCCeEEEEeCCCC--------CceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCcee
Q psy12788        142 VSPSQVLVKPLSGE--------SKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       142 ~~~~~~~v~~~~~~--------~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~  202 (254)
                      ..+..+.+||+...        .++..+.+++.+|+        .++.|++ |+.|+.++||+..+|+..
T Consensus       414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg--------~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG--------GNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             cccCeeEEeecchhhHHHHhhcccccceEEEeccCC--------CCcceEEecCCCceEEEEEccCCcee
Confidence            78889999999743        22566777777765        2556654 667999999999988754

>KOG0273|consensus

Probab=99.85  E-value=1.8e-19  Score=157.72  Aligned_cols=201  Identities=13%  Similarity=0.194  Sum_probs=139.3

Q ss_pred             ccccCCCCCEEEEecC--C-eEEEEeCCCcEEEEe-CC--CCEE--EEeeecC----C-CCCCCCEEEEEECCCCCEEEE
Q psy12788          2 RVVQHPVPPYALSWPA--G-YILAAGSDRIVTIYE-SD--GRVH--RIFDYTA----P-HYKEREFTVACSSPSGQAVVV   68 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd-~~--g~~~--~~~~~~~----~-~~~~~~v~~~a~sPdg~~la~   68 (254)
                      ++..|..+|..++|+|  + .+++++.|.+.|+|+ ..  ..+.  ..|++..    + .+....|++++|+-+|.+||+
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat  252 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT  252 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence            4556999999999999  3 689999999999998 32  2111  1121111    1 023457999999999999999


Q ss_pred             EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee------EE--
Q psy12788         69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF------EM--  139 (254)
Q Consensus        69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~------~~--  139 (254)
                      |+.|+ +|+|+..-..  .    ...-.|.++|.+|.|+.+|+||++++.||++.+||..++.......|      .+  
T Consensus       253 G~~~G~~riw~~~G~l--~----~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  253 GSEDGEARIWNKDGNL--I----STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             eecCcEEEEEecCchh--h----hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            99998 8999943211  0    12234778999999999999999999999999999866543221111      11  


Q ss_pred             -------EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC-----------c
Q psy12788        140 -------IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN-----------L  200 (254)
Q Consensus       140 -------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~-----------~  200 (254)
                             +...++.+.|+-+....  +...+. .|.++|..+.+.|.+.++ +|+.|+|++||.+...           .
T Consensus       327 ~~~~~F~ts~td~~i~V~kv~~~~--P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  327 QSNDEFATSSTDGCIHVCKVGEDR--PVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             ecCceEeecCCCceEEEEEecCCC--cceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence                   12234557777766542  223333 466799999999988755 5777889999996633           3


Q ss_pred             eeeEeCCCCCCc
Q psy12788        201 LSEVLWPDSGRN  212 (254)
Q Consensus       201 ~~~~~~~~~~g~  212 (254)
                      +-.+.|. |+|.
T Consensus       404 i~t~~ws-p~g~  414 (524)
T KOG0273|consen  404 IYTIKWS-PTGP  414 (524)
T ss_pred             eeeEeec-CCCC
Confidence            4566777 4443

>KOG0285|consensus

Probab=99.84  E-value=1.8e-19  Score=153.37  Aligned_cols=185  Identities=11%  Similarity=0.128  Sum_probs=144.2

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|-+-|.+|++.|  ..+++||.|++|+||| .+|++..++.     +|-..|..+++|+--.|+.+++.|+ ++.||
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-----Ghi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-----GHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-----chhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            458999999999998  4799999999999999 8999886664     8889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~~  142 (254)
                      +...+-+-.     -..|...|.+++.+|.-..|++|+.|.++++||++++.....                ....++.+
T Consensus       222 Le~nkvIR~-----YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  222 LEYNKVIRH-----YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             chhhhhHHH-----hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence            754332111     134667999999999999999999999999999988755431                11234566


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      .|+.+++||+..|.   ....-.++.-.|.+++.+|....++.++.+-++-|++..|.
T Consensus       297 ~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~  351 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGE  351 (460)
T ss_pred             CCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhccCCccceeccCCccc
Confidence            78899999999883   44444455567788888876554444455567778877664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=2.1e-18  Score=144.19  Aligned_cols=187  Identities=17%  Similarity=0.210  Sum_probs=138.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +..|...+..+.|.++  .|++++.|+.|++|| .+++.+..+.     .|...+.++.|+|+++++++++.|+ +++|+
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWD  121 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            4568888889999874  799999999999999 5556665554     5777899999999999999988664 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~~  142 (254)
                      ........     ....+...|++++|+|+++++++++.+|.|++||...++....                +...++..
T Consensus       122 ~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         122 VETGKCLT-----TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             CCCcEEEE-----EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence            65322211     1123556899999999999999998899999999864432210                11222333


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCcee
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLS  202 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~  202 (254)
                      .++.+.+||+..+.   .......+...|..+.+++++.+++++. ++.+++||+.+++..
T Consensus       197 ~~~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         197 SDGTIKLWDLSTGK---CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             CCCcEEEEECCCCc---eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence            46788999998763   2222223445899999999877777766 999999999876643

>KOG0285|consensus

Probab=99.84  E-value=1.8e-19  Score=153.39  Aligned_cols=221  Identities=12%  Similarity=0.104  Sum_probs=160.6

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      |.||-..|..|++++  .+|.+|++|+.|+-|| ...+.++.+-     +|-..|+|++.+|.-+.|++|+.|. +|+||
T Consensus       189 ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  189 LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             ecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEee
Confidence            568999999999997  4899999999999999 5556665442     8889999999999999999999995 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece---------------eEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK---------------FEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~---------------~~~~~~~  143 (254)
                      ..++...     .....|..+|.++.+.|-...+++|+.|++|++||++.+|......               +.+...+
T Consensus       264 iRtr~~V-----~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas  338 (460)
T KOG0285|consen  264 IRTRASV-----HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS  338 (460)
T ss_pred             ecccceE-----EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence            8765543     2234578899999999999999999999999999998776653211               2222334


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEE
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVC  223 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~  223 (254)
                      +..+.-|++..|.   .+.-.+.+..-|+.++...++.+++++..+.+.+||-++|-..+..-. .-+.....-+..+.+
T Consensus       339 ~dnik~w~~p~g~---f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t-~vqpGSl~sEagI~a  414 (460)
T KOG0285|consen  339 PDNIKQWKLPEGE---FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT-IVQPGSLESEAGIFA  414 (460)
T ss_pred             CccceeccCCccc---hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc-cccCCccccccceeE
Confidence            5678888888773   222123444568899999888888898899999999888743211100 000111112345677


Q ss_pred             EEEeCCeeEEEEee
Q psy12788        224 LVFNAGELSIIEYG  237 (254)
Q Consensus       224 ~~~~~g~~~~~~~~  237 (254)
                      ..|+.-...|+.-+
T Consensus       415 s~fDktg~rlit~e  428 (460)
T KOG0285|consen  415 SCFDKTGSRLITGE  428 (460)
T ss_pred             EeecccCceEEecc
Confidence            88887555555443

>KOG0291|consensus

Probab=99.84  E-value=3.9e-19  Score=163.04  Aligned_cols=195  Identities=17%  Similarity=0.257  Sum_probs=143.4

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      |..+|...+.+++.+|+  +||+|++|++||||| ..|-|..+|.     .|...|+.+.|+..|+.+.+.|.|+ +|.|
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence            45689999999999996  899999999999999 8899998886     7889999999999999999999996 9999


Q ss_pred             EecCCCc-----------------------------------ceeecCcee----cCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         78 AWSPSKS-----------------------------------VWEEQPNKT----IPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        78 d~~~~~~-----------------------------------~~~~~~~~~----~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      |+..-++                                   .|...+.+.    ..|+++|.+++|+|+|+.||+|+-|
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            9753221                                   121111111    2477899999999999999999999


Q ss_pred             CcEEEEeeeeee----eE--ee----------ceeEEEEecCCeEEEEeCCCCCc-----------------eeeEEEEe
Q psy12788        119 GSVELFESVLKR----TI--WK----------GKFEMIYVSPSQVLVKPLSGESK-----------------GRGVILKS  165 (254)
Q Consensus       119 g~v~iwd~~~~~----~~--~~----------~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~~l~s  165 (254)
                      ++|++||+-...    .+  ..          ++-.....-++++.+||...+.-                 .....-.+
T Consensus       500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s  579 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS  579 (893)
T ss_pred             ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence            999999975331    11  11          12223334466788887654310                 00111112


Q ss_pred             cCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788        166 QYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       166 ~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                      ..+...+.|.+++|+.+ ++|+.++.|+|+|+.++-+
T Consensus       580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             ccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence            23457889999999875 5677899999999998854

>KOG0295|consensus

Probab=99.84  E-value=1.2e-19  Score=154.61  Aligned_cols=190  Identities=16%  Similarity=0.137  Sum_probs=149.0

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCC--CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYESD--GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~--g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      .|.+|...|..++|+.  .+|+++|.|=.+++||..  -+|++.+.     +|+..|.+++|-|.|.++++++.|. ++.
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-----gh~h~vS~V~f~P~gd~ilS~srD~tik~  219 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-----GHEHGVSSVFFLPLGDHILSCSRDNTIKA  219 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc-----CcccceeeEEEEecCCeeeecccccceeE
Confidence            4789999999999986  589999999999999933  35554432     7889999999999999999999995 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------------  133 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------------  133 (254)
                      |+.+..-..     ....+|..-|..+.-+.||.++|+++.|.++++|-..++.+..                       
T Consensus       220 We~~tg~cv-----~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i  294 (406)
T KOG0295|consen  220 WECDTGYCV-----KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI  294 (406)
T ss_pred             EecccceeE-----EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence            997643322     2233455678899999999999999999999999877662210                       


Q ss_pred             --------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeE
Q psy12788        134 --------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       134 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~  204 (254)
                              .++++...+-|..+++||+.++.   -+..-..++..|..++|+|.++|++ +..|+++++||+.++++...
T Consensus       295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             hhccCCCCCccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence                    11345555667889999999993   3333345677999999999999876 55678999999999988644

>KOG0265|consensus

Probab=99.84  E-value=4e-19  Score=148.17  Aligned_cols=190  Identities=18%  Similarity=0.221  Sum_probs=140.4

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l   76 (254)
                      ++.+|+++|..|.|.+  +.|+++|.|++++.|| ++|++++.+.     +|..-++++.-+.-| +++++|+.|+ +||
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-----~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl  159 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-----GHTSFVNSLDPSRRGPQLVCSGSDDGTLKL  159 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-----cccceeeecCccccCCeEEEecCCCceEEE
Confidence            5779999999999986  5799999999999999 8999986554     788888888733334 5678899886 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMI  140 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~  140 (254)
                      ||...+..      .+.++..++++++.|+.++..+.+|+-|+.|++||++-....+                .+.|.++
T Consensus       160 ~D~R~k~~------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls  233 (338)
T KOG0265|consen  160 WDIRKKEA------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS  233 (338)
T ss_pred             Eeecccch------hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence            99754332      3456677899999999999999999999999999985433222                2233444


Q ss_pred             EecCCeEEEEeCCCCCceee-EEEE--ecCCCcee--EEEEecCcEEEEE-ECCCcEEEEeccCCcee
Q psy12788        141 YVSPSQVLVKPLSGESKGRG-VILK--SQYGYEIT--DVAIMGNDRYLVA-RTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~-~~l~--s~~~~~i~--~i~~~~~~~~~v~-~~d~~i~i~dl~~~~~~  202 (254)
                      ..=+..+++||++.-...++ +.+.  ..++.+++  ..+++|++.++.+ +.|+.+++||..+..+.
T Consensus       234 nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  234 NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL  301 (338)
T ss_pred             ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence            44467899999875432244 3332  23344555  4556788888775 56899999998876654

>KOG0284|consensus

Probab=99.83  E-value=2.6e-20  Score=160.59  Aligned_cols=213  Identities=10%  Similarity=0.139  Sum_probs=158.4

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +-.|+.+|.++.|++  ..++||..|+.||+|+.+-+.++.+.   . .|...|+++||||+...|+++|.|+ ++|||.
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~---a-hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf  209 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ---A-HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF  209 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh---H-hhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence            457999999999987  47999999999999997665554432   1 3447899999999999999999996 999996


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEec
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYVS  143 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~~  143 (254)
                      ...+.   +  .....|...|.+++|+|.-.+||+|+.|..|++||.+++.++.                .+.|+++.+-
T Consensus       210 ~~~ke---e--~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  210 RMPKE---E--RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             cCCch---h--heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence            53222   1  2224456689999999999999999999999999988776542                3457788888


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec--CcEEEEEECCCcEEEEeccCC------------ceeeEeCCCC
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--NDRYLVARTPDTLLLGDLHRN------------LLSEVLWPDS  209 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~--~~~~~v~~~d~~i~i~dl~~~------------~~~~~~~~~~  209 (254)
                      |..++++|+.+-.  .-... ..+..+++++.++|  .+-|.+++.|+.+..|.+...            .+-.+.|+ |
T Consensus       285 D~~~kv~DiR~mk--El~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h-P  360 (464)
T KOG0284|consen  285 DQSCKVFDIRTMK--ELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH-P  360 (464)
T ss_pred             CceEEEEehhHhH--HHHHh-hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc-c
Confidence            8899999998432  22222 23456899999987  345777999999999988732            23456676 6


Q ss_pred             CCceeEEeeCceEEEEEeC
Q psy12788        210 GRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~  228 (254)
                      -|+-....+++....+|+-
T Consensus       361 lGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  361 LGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cceeEeecCCCcceeeecc
Confidence            6665555555555566654

>KOG0277|consensus

Probab=99.83  E-value=1.9e-19  Score=147.23  Aligned_cols=160  Identities=17%  Similarity=0.210  Sum_probs=125.7

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~   75 (254)
                      ++..|...|+++.|++   +.++++|-|++||+|+ ..++.+++|.     +|..-|+.++||| .+++||++|.|+ ++
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-----GHNSCIYQAAFSPHIPNLFASASGDGTLR  173 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-----CCccEEEEEecCCCCCCeEEEccCCceEE
Confidence            4567999999999997   3688889999999999 5678888876     8999999999999 478999999996 89


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  154 (254)
                      +||+....+.     .....|..+|.++.||. |-..+|+|+.|+.|++||++.-|.                       
T Consensus       174 lwdvr~~gk~-----~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----------------------  225 (311)
T KOG0277|consen  174 LWDVRSPGKF-----MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----------------------  225 (311)
T ss_pred             EEEecCCCce-----eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----------------------
Confidence            9998653321     11223556899999988 567899999999999999864331                       


Q ss_pred             CCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCC
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~  199 (254)
                          +...| ..++..|++|+|||..  .++.|+.|-|++|||.+.+
T Consensus       226 ----pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  226 ----PLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             ----cceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence                11222 3456789999999864  3567888999999998844

>KOG0296|consensus

Probab=99.83  E-value=2.4e-18  Score=146.70  Aligned_cols=161  Identities=16%  Similarity=0.205  Sum_probs=130.3

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+..|+..|++++-+|+  .++|||.|....+|+ .+|...    +.+. +|...|+++.||.||.+||+|.+++ ++||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~----~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----GELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce----eEec-CCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            36789999999999984  699999999999999 788866    3344 8999999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      ..+++...|..     ...-..|.-+.|+|-+..|+.|+.||.+.+|.+-.+                            
T Consensus       134 ~~stg~~~~~~-----~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----------------------------  180 (399)
T KOG0296|consen  134 KVSTGGEQWKL-----DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----------------------------  180 (399)
T ss_pred             EcccCceEEEe-----ecccCceEEEEecccccEEEeecCCCcEEEEECCCc----------------------------
Confidence            98876666643     123356888999999999999999999999976321                            


Q ss_pred             eeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                       ....+-+.++.++++-.|.|+++ .+++..|++|++||+.++..
T Consensus       181 -~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p  224 (399)
T KOG0296|consen  181 -ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP  224 (399)
T ss_pred             -ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence             01122233456788888998884 67788999999999999864

>KOG0281|consensus

Probab=99.83  E-value=1.3e-19  Score=153.92  Aligned_cols=177  Identities=14%  Similarity=0.182  Sum_probs=136.5

Q ss_pred             CCCCEEEEecCCeEEEEeCCCcEEEEeCC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCc
Q psy12788          7 PVPPYALSWPAGYILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKS   84 (254)
Q Consensus         7 ~~~v~~l~w~~~~l~s~s~D~~i~vWd~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~   84 (254)
                      ...|++|..+.+.|++|..|++|+|||.+ -.+++    .+. ||.+.|-|+.|  |.+.+++||.| ++++|||+++..
T Consensus       197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~----~L~-GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLK----ILT-GHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             CCceEEEEecchhhhcccccCceEEeccccHHHHH----hhh-cCCCcEEeeec--cceEEEecCCCceEEEEeccCCch
Confidence            46799999999999999999999999944 45663    344 89999999988  46699999999 599999987654


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee-----------------eEeeceeEEEEecCCeE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR-----------------TIWKGKFEMIYVSPSQV  147 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~  147 (254)
                      .     ...+.|-..|.-+.|+  ..++++++.|.++.+||+....                 ..++.+|.++.++|.++
T Consensus       270 l-----~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTi  342 (499)
T KOG0281|consen  270 L-----NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  342 (499)
T ss_pred             h-----hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceE
Confidence            2     2234566688889996  4599999999999999974321                 12356688899999999


Q ss_pred             EEEeCCCCCceeeEEEEecCCC--ceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeE
Q psy12788        148 LVKPLSGESKGRGVILKSQYGY--EITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       148 ~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ++|+..+++     .++..+|+  .|.+++.-  ++++| +++|.||+|||++.|++..+
T Consensus       343 kvW~~st~e-----fvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  343 KVWSTSTCE-----FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             EEEecccee-----eehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHH
Confidence            999999983     34444444  45555544  67766 67799999999999987644

>KOG0276|consensus

Probab=99.82  E-value=4.6e-19  Score=159.79  Aligned_cols=183  Identities=15%  Similarity=0.161  Sum_probs=143.1

Q ss_pred             CCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          7 PVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      ..||.+..|-+  +.+++||.|..|||+| .+++.+.+|.     .|++-|.+++.||.-.++.++|+|. +++|||+  
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe-----AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we--  127 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-----AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE--  127 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEee-----ccccceeeeeecCCCCeEEecCCccEEEEeecc--
Confidence            34566666644  5799999999999999 7889898886     7999999999999999999999995 9999995  


Q ss_pred             CcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeE------------------eeceeEEEEec
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTI------------------WKGKFEMIYVS  143 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~------------------~~~~~~~~~~~  143 (254)
                       +.|... .....|...|..++|+| |.+.+|++|.|++|++|.+-...+.                  .+.+|.++..+
T Consensus       128 -~~wa~~-qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  128 -NEWACE-QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             -Cceeee-eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence             456542 23345677999999999 6789999999999999986322111                  13458888888


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      |..++|||..+..  +-..| ..|.+.|..+.|+|.-. +++|+.|+|++||.-.|-++
T Consensus       206 D~tiKvWDyQtk~--CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  206 DLTIKVWDYQTKS--CVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             CceEEEeecchHH--HHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            9999999998873  22222 23446788999998654 56788899999999887653

>KOG1446|consensus

Probab=99.82  E-value=3.8e-18  Score=143.15  Aligned_cols=209  Identities=12%  Similarity=0.122  Sum_probs=136.9

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~   77 (254)
                      .+.||...|..|+-+|  +.++|+|.|++||+|| +..+|+.-+..       ..-..+||+|.|-++|+|... .|+||
T Consensus        95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCeEEEE
Confidence            4679999999999998  6899999999999999 65666543321       123468999999999999866 69999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |.....+.--.......+...+.+.|.|||||++|+.++..+.+.+.|+-.|....      ++...         ..  
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~------tfs~~---------~~--  230 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS------TFSGY---------PN--  230 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee------eEeec---------cC--
Confidence            97643221100001111234578999999999999999999999999985444221      11110         00  


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEe
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEY  236 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  236 (254)
                               .+.--.+-.|+|+++|+.+++ |++|.+|++++++...+ |.++.+       .++.|+-||++-..++. 
T Consensus       231 ---------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~-~~~~~~-------~~~~~~~fnP~~~mf~s-  292 (311)
T KOG1446|consen  231 ---------AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV-LRGPNG-------GPVSCVRFNPRYAMFVS-  292 (311)
T ss_pred             ---------CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE-ecCCCC-------CCccccccCCceeeeee-
Confidence                     011113567789999877555 68999999999976533 432321       23455556665433332 


Q ss_pred             ecCeeeeeeecCCcCC
Q psy12788        237 GNNEILTCVRIPTDSS  252 (254)
Q Consensus       237 ~~~~~~~~~~~~~~~~  252 (254)
                      +...+.-++.+++..+
T Consensus       293 a~s~l~fw~p~~~~~~  308 (311)
T KOG1446|consen  293 ASSNLVFWLPDEDALP  308 (311)
T ss_pred             cCceEEEEeccccccC
Confidence            2334445666665543

>KOG1407|consensus

Probab=99.82  E-value=1.6e-18  Score=142.34  Aligned_cols=162  Identities=17%  Similarity=0.259  Sum_probs=117.6

Q ss_pred             ccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEE
Q psy12788          4 VQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d   78 (254)
                      .+|...|-.++|+|   +++++++.|++|++|| +.+++...+.      ...+-.-++|+|+|+++|+++.| .+...|
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~------~~~eni~i~wsp~g~~~~~~~kdD~it~id  134 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE------TKGENINITWSPDGEYIAVGNKDDRITFID  134 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee------ccCcceEEEEcCCCCEEEEecCcccEEEEE
Confidence            47999999999986   6899999999999999 8999987664      22345568999999999999977 576766


Q ss_pred             ecCCCc-------------ceeecC-------------cee----------cCCCCcEeEEEEecCCCeEEEeecCCcEE
Q psy12788         79 WSPSKS-------------VWEEQP-------------NKT----------IPNLYTISALSWKRDGSRIACGGLCGSVE  122 (254)
Q Consensus        79 ~~~~~~-------------~~~~~~-------------~~~----------~~~~~~i~~l~~spdG~~la~g~~dg~v~  122 (254)
                      ....+.             .|....             ..+          ..|.....+|.|+|+|+|+|+|+.|-.+.
T Consensus       135 ~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  135 ARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             ecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence            543221             110000             000          11334577889999999999999999999


Q ss_pred             EEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCc
Q psy12788        123 LFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNL  200 (254)
Q Consensus       123 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~  200 (254)
                      +||+..-  +                           .....+.+..+|..|.|+-++++++ |+.|.-|=|+++++|.
T Consensus       215 LWD~~EL--i---------------------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  215 LWDVDEL--I---------------------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             ccChhHh--h---------------------------hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            9996310  0                           0011123467899999999998876 6678888899999884

>KOG0296|consensus

Probab=99.81  E-value=5.8e-18  Score=144.40  Aligned_cols=188  Identities=13%  Similarity=0.127  Sum_probs=139.2

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d   78 (254)
                      .+.+|+..|.++.|+.  .+||||..++.|+||+ .+|.....+.+     .-..+.=+.|||-+..|+.|+.|+. +|-
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-----e~~dieWl~WHp~a~illAG~~DGs-vWm  174 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-----EVEDIEWLKWHPRAHILLAGSTDGS-VWM  174 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-----ccCceEEEEecccccEEEeecCCCc-EEE
Confidence            4789999999999986  4899999999999999 78877766652     2356888999999999999999974 444


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec-----------------------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG-----------------------  135 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~-----------------------  135 (254)
                      |+...+...   .....|..++++=.|.|||+++++|..||+|++|+..++....+-                       
T Consensus       175 w~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g  251 (399)
T KOG0296|consen  175 WQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG  251 (399)
T ss_pred             EECCCccee---eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence            443332221   223446778999999999999999999999999998766543210                       


Q ss_pred             ----eeE----------EEE---------------------------------ecCCeEEEEeCCCCCceeeEEEEecCC
Q psy12788        136 ----KFE----------MIY---------------------------------VSPSQVLVKPLSGESKGRGVILKSQYG  168 (254)
Q Consensus       136 ----~~~----------~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~l~s~~~  168 (254)
                          .+.          ..+                                 .-++++.+||+++-.    +...-.+.
T Consensus       252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~R~~c~he  327 (399)
T KOG0296|consen  252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----LRHICEHE  327 (399)
T ss_pred             cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----hheeccCC
Confidence                000          000                                 114567788887642    22223455


Q ss_pred             CceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        169 YEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       169 ~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ..|.++.|.+...+++++.++.+++||.++|++.
T Consensus       328 ~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  328 DGVTKLKWLNTDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             CceEEEEEcCcchheeeccCceEEeeeccccceE
Confidence            6799999998667788899999999999988754

>KOG0284|consensus

Probab=99.81  E-value=1.8e-19  Score=155.48  Aligned_cols=179  Identities=15%  Similarity=0.106  Sum_probs=133.4

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      .|...|.+++|+|+  .+++||.|++|+||| ...+.-+.+.     +|...|.+++|||...+||+||.|. |++||-.
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----cCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            35689999999983  699999999999999 6655544443     8989999999999999999999997 8999954


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee-e---Eeecee--E-----------EEEec
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR-T---IWKGKF--E-----------MIYVS  143 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~-~---~~~~~~--~-----------~~~~~  143 (254)
                      +....     .....|...|..+.|+|+|++|++++.|..++++|+++.+ .   +...++  .           .+.-.
T Consensus       253 Sg~cl-----~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~  327 (464)
T KOG0284|consen  253 SGSCL-----ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS  327 (464)
T ss_pred             Ccchh-----hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence            33322     2234577899999999999999999999999999987321 1   111111  1           12224


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEe
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGD  195 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~d  195 (254)
                      ++++..|.+....  ....+--.+..+|.+++++|=+.+ ++|+.|+++++|.
T Consensus       328 Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  328 DGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             CCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            6778878776332  233333345668999999998865 4577799999995

>KOG0264|consensus

Probab=99.81  E-value=1.5e-18  Score=151.28  Aligned_cols=163  Identities=13%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEeCC--CC---EEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYESD--GR---VHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~~--g~---~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d   72 (254)
                      +|.+|...-++|+|++.   .|++++.|++|.+||.+  +.   .+... .... +|...|..++|+|- .++|++.+.|
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~-~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPK-TIFS-GHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccce-EEee-cCCcceehhhccccchhhheeecCC
Confidence            68899988899999973   69999999999999932  22   12111 1122 79999999999995 5678888888


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEE
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVK  150 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  150 (254)
                      + +.|||.+...   +........|..+|++++|+| ++..||+|+.|++|.+||++.-+                    
T Consensus       250 ~~L~iwD~R~~~---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------------  306 (422)
T KOG0264|consen  250 GKLMIWDTRSNT---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------------------  306 (422)
T ss_pred             CeEEEEEcCCCC---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------------
Confidence            5 8899965311   111122345678999999999 56779999999999999985321                    


Q ss_pred             eCCCCCceeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEecc
Q psy12788        151 PLSGESKGRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLH  197 (254)
Q Consensus       151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~  197 (254)
                              ..+.....+..+|.+|.|+|...  ++++++|+.+.|||+.
T Consensus       307 --------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  307 --------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             --------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence                    11122224567899999999653  5556789999999987

>KOG0300|consensus

Probab=99.81  E-value=3.7e-18  Score=143.66  Aligned_cols=233  Identities=12%  Similarity=0.133  Sum_probs=168.1

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      -+.||...|+.++-..  ..+.++|.|.+.+||. ++|.|+.++.     +|.+.|++++|+|.+.+++++|.|. ..||
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-----GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-----GHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-----ccccceeeEEeccccceEEEccCCcchHHH
Confidence            4679999999998864  4688999999999999 8999996654     8999999999999999999999885 6788


Q ss_pred             Ee----cCCCc-------ceeec-----------------------C-ceecCCCCcEeEEEEecCCCeEEEeecCCcEE
Q psy12788         78 AW----SPSKS-------VWEEQ-----------------------P-NKTIPNLYTISALSWKRDGSRIACGGLCGSVE  122 (254)
Q Consensus        78 d~----~~~~~-------~~~~~-----------------------~-~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~  122 (254)
                      ..    ....+       .-++.                       + .....|...|.++.|=.-|+.+++++-|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            52    11110       00000                       0 01112445688889999999999999999999


Q ss_pred             EEeeeeeeeEee----------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE
Q psy12788        123 LFESVLKRTIWK----------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR  186 (254)
Q Consensus       123 iwd~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~  186 (254)
                      +||++++.....                .+..++.+.+.+.++||+...-  +.+.+...+...|+++.|.-+++.+.++
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--~sV~VFQGHtdtVTS~vF~~dd~vVSgS  375 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--QSVAVFQGHTDTVTSVVFNTDDRVVSGS  375 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc--ceeeeecccccceeEEEEecCCceeecC
Confidence            999988765431                1234456667889999998542  4455555566789999999888999999


Q ss_pred             CCCcEEEEeccCCc--eeeEeCCCCCCcee-EEeeCceEEEEEeCCeeEEEEeecCeee
Q psy12788        187 TPDTLLLGDLHRNL--LSEVLWPDSGRNEK-FYFDNVTVCLVFNAGELSIIEYGNNEIL  242 (254)
Q Consensus       187 ~d~~i~i~dl~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~  242 (254)
                      .|.+++||||+.-+  +..++-. +..+.. .....++.++-.+...+.++++..+-+.
T Consensus       376 DDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla  433 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA  433 (481)
T ss_pred             CCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence            99999999998643  3344444 222222 2334556666666677777777765543

>KOG0313|consensus

Probab=99.81  E-value=4e-18  Score=145.97  Aligned_cols=195  Identities=14%  Similarity=0.173  Sum_probs=141.4

Q ss_pred             ccccCCCCCEEEEecC--C---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788          2 RVVQHPVPPYALSWPA--G---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I   74 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i   74 (254)
                      .+.+|++++.+++|-.  +   .++++|.|.++++|. ..|+.......... ||...|-+++..++|..+++||.|. +
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~l  217 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTML  217 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCCeEEeeccccee
Confidence            4679999999999942  2   599999999999997 55543322223344 8999999999999999999999995 9


Q ss_pred             EEEEecCCCc-ceeec------------------Cc-eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         75 KLFAWSPSKS-VWEEQ------------------PN-KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        75 ~l~d~~~~~~-~~~~~------------------~~-~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                      ++|+...... ..+..                  +. ....|..+|.+|.|++ ...+.+++.|.+|+.||+.+++....
T Consensus       218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~  296 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST  296 (423)
T ss_pred             eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee
Confidence            9999321110 00000                  00 1113567899999998 67888999999999999988765421


Q ss_pred             ----cee-----------EEEEecCCeEEEEeCCCCCceeeEEEEecCCC--ceeEEEEecCc--EEEEEECCCcEEEEe
Q psy12788        135 ----GKF-----------EMIYVSPSQVLVKPLSGESKGRGVILKSQYGY--EITDVAIMGND--RYLVARTPDTLLLGD  195 (254)
Q Consensus       135 ----~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~~~~~--~~~v~~~d~~i~i~d  195 (254)
                          ..+           .++.+++..+++||-+++.  ..++..+..|+  .|..+.++|.+  .|+.++.|+++++||
T Consensus       297 ~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~--gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  297 LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD--GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             eecCcceeEeecccccceeeecCCCCceeecCCCCCC--CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence                111           2234456788999998775  45555554444  79999999866  467788999999999


Q ss_pred             ccCCc
Q psy12788        196 LHRNL  200 (254)
Q Consensus       196 l~~~~  200 (254)
                      +++-+
T Consensus       375 vRS~k  379 (423)
T KOG0313|consen  375 VRSTK  379 (423)
T ss_pred             eccCC
Confidence            99755

>PTZ00421 coronin; Provisional

Probab=99.81  E-value=6.5e-17  Score=149.11  Aligned_cols=188  Identities=10%  Similarity=0.055  Sum_probs=125.7

Q ss_pred             CEEEEecCCeEEEEeCCCcEEEEeCCCC-EEEEee---------ecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEE
Q psy12788         10 PYALSWPAGYILAAGSDRIVTIYESDGR-VHRIFD---------YTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLF   77 (254)
Q Consensus        10 v~~l~w~~~~l~s~s~D~~i~vWd~~g~-~~~~~~---------~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~   77 (254)
                      +...+|+...+++++.+..+..|+..|. .+-.+.         ..+. +|...|++++|+| ++++||+|+.|+ +++|
T Consensus        25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW  103 (493)
T PTZ00421         25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASEDGTIMGW  103 (493)
T ss_pred             cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            4456677667889999988889984443 221110         0123 6889999999999 899999999996 9999


Q ss_pred             EecCCCccee--ecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEe----------------eceeE
Q psy12788         78 AWSPSKSVWE--EQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIW----------------KGKFE  138 (254)
Q Consensus        78 d~~~~~~~~~--~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~  138 (254)
                      |+........  ........|...|.+|+|+|++ ++||+|+.|+.|+|||+..++...                ++...
T Consensus       104 di~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lL  183 (493)
T PTZ00421        104 GIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL  183 (493)
T ss_pred             ecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEE
Confidence            9764321100  0001223467789999999986 699999999999999987654321                12223


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEE----CCCcEEEEeccCCc
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVAR----TPDTLLLGDLHRNL  200 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~----~d~~i~i~dl~~~~  200 (254)
                      ++...++.+++||+.++.  ....+..+.+..+..+.+.+++ .+++++    .|++++|||++...
T Consensus       184 atgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        184 CTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             EEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            344557789999999874  2223333333345566777654 444433    37899999998643

>KOG0275|consensus

Probab=99.80  E-value=5.6e-19  Score=148.94  Aligned_cols=191  Identities=14%  Similarity=0.249  Sum_probs=149.8

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCC---CCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPH---YKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~---~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +..+.|.+..|+|  ++|++||.|+-|.+|| .+|+..+.+.|..+.   -++..|.|+.||.|..++|+|+.|+ +++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3455678888998  4899999999999999 899888777765420   1567899999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~  141 (254)
                      .+.+....    +..+..|...|+++.||.|++.+.+++.|.++++.-+.++++..                ++.+.++.
T Consensus       291 ri~tG~Cl----RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  291 RIETGQCL----RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEecchHH----HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            98754432    13345677889999999999999999999999999887766532                34456778


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEec-CCCceeEEEEecC--cEEEEEECCCcEEEEeccCCce
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQ-YGYEITDVAIMGN--DRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~-~~~~i~~i~~~~~--~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ++|+.+++|+..+.+  +....++. ...+|++|-..|.  +.++|+..+++++|-++...-+
T Consensus       367 SsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             cCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence            889999999998875  32333332 3457889888774  3699999999999999876554

>KOG0294|consensus

Probab=99.80  E-value=1.6e-17  Score=139.56  Aligned_cols=230  Identities=16%  Similarity=0.165  Sum_probs=160.0

Q ss_pred             ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC--EEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ--AVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~--~la~gs~d~-i~l~d~   79 (254)
                      ..|..++.+||-+..++||||.|.+|+||| +.-..+..+-     .|.+.|+++.|.|+-.  .|.+|+.|+ +.+|+ 
T Consensus        40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll-----~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~-  113 (362)
T KOG0294|consen   40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILL-----SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR-  113 (362)
T ss_pred             cccccceeEEEecceeEeccCCCCcEEEEeccchhhhccee-----ccccceEEEEecCCcchhheeeecCCCcEEEEE-
Confidence            468899999999999999999999999999 5444454443     5888999999999875  788999996 88999 


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----ceeEEEE---------ecCC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----GKFEMIY---------VSPS  145 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~~~~~~~---------~~~~  145 (254)
                         .+.|+.. .....|...|+.++.+|.|++-++.+.|+.+++||+..+|.-+-     .+..+.+         ....
T Consensus       114 ---~~~W~~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  114 ---VGSWELL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             ---cCCeEEe-eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence               6778652 23345777899999999999999999999999999987764321     1112222         2344


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce-eeEeCCCCCCceeEEeeC---ce
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL-SEVLWPDSGRNEKFYFDN---VT  221 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~-~~~~~~~~~g~~~~~~~~---~~  221 (254)
                      .+-+|.+.+..    +........++.++.|..++.+++|..+..+.+||-....+ .++.-++...+..+.+.+   .-
T Consensus       190 ~i~i~q~d~A~----v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  190 KIDIYQLDNAS----VFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             EEEEEecccHh----HhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence            56666665542    11111222456777777667888999999999999887653 444444344455555544   33


Q ss_pred             EEEEEeCCeeEEEEeecC-----eeeeeeec
Q psy12788        222 VCLVFNAGELSIIEYGNN-----EILTCVRI  247 (254)
Q Consensus       222 ~~~~~~~g~~~~~~~~~~-----~~~~~~~~  247 (254)
                      ...+-++|.+.+.+..-+     +.|+...|
T Consensus       266 lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~  296 (362)
T KOG0294|consen  266 LVTASSDGFIKVWDIDMETKKRPTLLAELNT  296 (362)
T ss_pred             EEEeccCceEEEEEccccccCCcceeEEeec
Confidence            444555577776665533     45555544

>KOG0640|consensus

Probab=99.80  E-value=2.7e-19  Score=150.00  Aligned_cols=171  Identities=16%  Similarity=0.293  Sum_probs=129.6

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~   77 (254)
                      .|-.|..+|..|.|.|.  .|++|+.|++|+++| ......+.+++-   ....+|.+++|+|.|.+|++|... .+|+|
T Consensus       167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCCceeEE
Confidence            45679999999999993  799999999999999 333222222211   245689999999999999999876 48999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |+++.+.-...  .-.-.|...|+++.+|+.|++.++|+.||.|+|||-.+.|++..                 +.    
T Consensus       244 dv~T~Qcfvsa--nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t-----------------~~----  300 (430)
T KOG0640|consen  244 DVNTYQCFVSA--NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT-----------------IG----  300 (430)
T ss_pred             eccceeEeeec--CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH-----------------HH----
Confidence            98764432221  12234567899999999999999999999999999876665421                 11    


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeE
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~  204 (254)
                            ..+-|.+|.+..|.-+++|+. .+.|.++++|.+.++++...
T Consensus       301 ------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  301 ------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence                  113356899999998888865 55699999999999986544

>KOG0645|consensus

Probab=99.80  E-value=1.8e-17  Score=136.66  Aligned_cols=178  Identities=16%  Similarity=0.213  Sum_probs=127.9

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +|+..|..+||+|  ++|++||.|.++.||. .++  +++.+++     ||+.+|.|++||++|.+||+++.|+ +-+|.
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            6899999999988  6899999999999997 434  5776665     9999999999999999999999997 55665


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-------eee------Eeecee------EE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-------KRT------IWKGKF------EM  139 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-------~~~------~~~~~~------~~  139 (254)
                      ... ...++.. ....+|..-|.-+.|+|.-.+|++++.|.+|++|+-..       ..+      .+.-.|      +.
T Consensus       134 ~de-ddEfec~-aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~  211 (312)
T KOG0645|consen  134 IDE-DDEFECI-AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV  211 (312)
T ss_pred             ecC-CCcEEEE-eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence            432 2222221 22345777899999999999999999999999997531       111      011111      12


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      ....+..+.||.+-+.       +...+..++..+.+. ++.+++++.|+.|+|+--.
T Consensus       212 s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLYTD-------LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             EecCCcceEeeeeccC-------cchhcccceEeeeec-ccceEeccCCCEEEEEEec
Confidence            3334556666664332       111233578888888 7888999999999998544

>KOG0772|consensus

Probab=99.80  E-value=7.4e-19  Score=155.52  Aligned_cols=120  Identities=15%  Similarity=0.244  Sum_probs=94.0

Q ss_pred             ccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPA---GYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .||...+.+..|.|   +.++|+|.|+++|+|| . ....++.|......+..-++++|+|+|||+.||+|+.|+ |.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            48999999999998   3699999999999999 3 335566665443313345789999999999999999996 9999


Q ss_pred             EecCCCcceeecCc--eecCCCC--cEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         78 AWSPSKSVWEEQPN--KTIPNLY--TISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        78 d~~~~~~~~~~~~~--~~~~~~~--~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +.    +.|.....  ....|..  .|++|+||+||++|++-+.|+++++||++
T Consensus       345 ~~----~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  345 DK----GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ec----CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            94    22221111  1223443  89999999999999999999999999986

>KOG0293|consensus

Probab=99.79  E-value=3.7e-17  Score=141.50  Aligned_cols=188  Identities=15%  Similarity=0.208  Sum_probs=135.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      |..|+..|.-+.|+++  +|||||.|.+..+|+  .+++ + .+.+++. +|..+|..+.||||.++|++++.+. +++|
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~-kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-F-KLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-e-eeeeeee-cccCceEEEEECCCCCeEEecCchHheeec
Confidence            5689999999999985  899999999999998  4444 1 1223444 8999999999999999999999885 8899


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee----------------eEeeceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR----------------TIWKGKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~----------------~~~~~~~~~~~  141 (254)
                      |..+.....    .....+...+.+++|.|||..+++|+.|+++..||.--..                ..+++++.+.-
T Consensus       297 Dv~tgd~~~----~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  297 DVDTGDLRH----LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             cCCcchhhh----hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence            976543211    1112234579999999999999999999999999963110                01133444444


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCce
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~  201 (254)
                      ..|..+.+++..+-.  .+-.+  ...++|+++.+|.+++|+. --.++.+.+||++..++
T Consensus       373 ~~d~~i~l~~~e~~~--dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l  429 (519)
T KOG0293|consen  373 TVDKKIRLYNREARV--DRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL  429 (519)
T ss_pred             ecccceeeechhhhh--hhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence            445556666655431  11122  2246899999999888755 55788999999996553

>KOG0313|consensus

Probab=99.79  E-value=9.7e-18  Score=143.67  Aligned_cols=214  Identities=12%  Similarity=0.139  Sum_probs=152.6

Q ss_pred             cCCCCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCC---CEEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG---QAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg---~~la~gs~d~-i~l~d~~   80 (254)
                      -|+.-|.++.-.+..|+||+.|+++|+||..|+++.++.     +|.++|.+++|.-..   ..|++++.|+ +++|.|+
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            466667777666778999999999999999999997665     899999988885333   3599999996 9999998


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee----------eeeeEe-----------------
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV----------LKRTIW-----------------  133 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~----------~~~~~~-----------------  133 (254)
                      ......... .....|...|-+|+-.+||.++++|+.|.++.||+..          +.|.+.                 
T Consensus       178 ~~~~~~~~~-~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  178 VGENKVKAL-KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             CchhhhhHH-hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            755543221 1223678899999999999999999999999999921          010000                 


Q ss_pred             ece---e-EEE-------E--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC
Q psy12788        134 KGK---F-EMI-------Y--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN  199 (254)
Q Consensus       134 ~~~---~-~~~-------~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~  199 (254)
                      .+.   . .+.       |  +-|.+++.||+.+++  ....+  ..+..+++|..+|...+ +++++|..+++||.+++
T Consensus       257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~--~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG--LKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             cccccceeeEEEcCCCceEeecccceEEEEEeeccc--ceeee--ecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            000   0 111       1  225689999999985  22222  23457899999986655 45778999999999976


Q ss_pred             c--------------eeeEeCCCCCCceeE-EeeCceEEEEEeCC
Q psy12788        200 L--------------LSEVLWPDSGRNEKF-YFDNVTVCLVFNAG  229 (254)
Q Consensus       200 ~--------------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g  229 (254)
                      .              +..+.|+ |.....| ....++.+++|+..
T Consensus       333 ~gs~v~~s~~gH~nwVssvkws-p~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWS-PTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             CCceeEEeeecchhhhhheecC-CCCceEEEEEecCCeEEEEEec
Confidence            3              3477888 4322222 33668899999984

>KOG0319|consensus

Probab=99.79  E-value=1e-17  Score=153.46  Aligned_cols=196  Identities=15%  Similarity=0.148  Sum_probs=141.4

Q ss_pred             cccCCCCCEEEE-ecCC-eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALS-WPAG-YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~-w~~~-~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l~   77 (254)
                      +.+|+..|.+|+ |+.. .|+|||.|+++++|-. ++......-.... +|.+.|.+++++..| ..|+++|.|. +++|
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEe
Confidence            568999999999 7664 8999999999999952 2211111101223 899999999998765 5689999995 9999


Q ss_pred             EecCCCcceeec----CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----------eec------ee
Q psy12788         78 AWSPSKSVWEEQ----PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----------WKG------KF  137 (254)
Q Consensus        78 d~~~~~~~~~~~----~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----------~~~------~~  137 (254)
                      ++...+..-...    ......|...|++++.+|+.++||+||.|++++||++...+..          +.-      +.
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            975422211110    0122346678999999999999999999999999998633322          111      12


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ..|.++|.++++|.+.+..   .+...+.|...|....|.-++ +++.|++|+-++||++.++.|.
T Consensus       520 laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             eEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            4567788999999998872   222223345579999998766 5777999999999999999763

>KOG0772|consensus

Probab=99.79  E-value=1.7e-18  Score=153.20  Aligned_cols=165  Identities=25%  Similarity=0.380  Sum_probs=120.7

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEee---------ecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-E
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFD---------YTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-I   74 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~---------~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i   74 (254)
                      .++.++.|++  ++|++.+-...++|+|++|-.+..+.         +..+ ||...++|.+|+|+.+ .|.+++.|+ +
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCCcE
Confidence            4688999987  57777777789999999886554441         2345 7999999999999754 688999995 9


Q ss_pred             EEEEecCCCcceeecCceecCC---CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEe
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPN---LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKP  151 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~---~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  151 (254)
                      |+|+++..+...+.  .+....   .-++++|+|+|||++||+|+.||+|++||....-.+            -...+.+
T Consensus       294 RiWdv~~~k~q~qV--ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~------------p~~~vk~  359 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQV--IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR------------PVMKVKD  359 (641)
T ss_pred             EEEecCCchhheeE--EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc------------cceEeee
Confidence            99999765554433  111111   237899999999999999999999999996321100            1122223


Q ss_pred             CCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCCcEEEEeccCC
Q psy12788        152 LSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRN  199 (254)
Q Consensus       152 ~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~~i~i~dl~~~  199 (254)
                      .+.+            |..|++|+||+++++|.. +.|+++++|||+.-
T Consensus       360 AH~~------------g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  360 AHLP------------GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCC------------CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            3322            468999999999987664 56999999999853

>KOG0274|consensus

Probab=99.79  E-value=3.6e-17  Score=151.56  Aligned_cols=219  Identities=11%  Similarity=0.126  Sum_probs=154.4

Q ss_pred             ccccCCCCCEEEEec--CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWP--AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~--~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|.+.|.++++.  .+.|++||.|.++|+|| .+|+|..++.     +|...+.++...  ..++++||+|. +++|
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~--~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-----GHTSSVRCLTID--PFLLVSGSRDNTVKVW  316 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-----CCCceEEEEEcc--CceEeeccCCceEEEE
Confidence            378999999999998  68999999999999999 8999997775     898999888775  45678899995 9999


Q ss_pred             EecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec---------------eeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG---------------KFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~---------------~~~~~~  141 (254)
                      ++......      ..+. |..+|.++..+  +.++++|+.||+|++||+.+.++....               ...+..
T Consensus       317 ~v~n~~~l------~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sg  388 (537)
T KOG0274|consen  317 DVTNGACL------NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSG  388 (537)
T ss_pred             eccCcceE------EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEee
Confidence            98743321      2223 77899999997  899999999999999999876665421               111222


Q ss_pred             ecCCeEEEEeCCCC-CceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEee-C
Q psy12788        142 VSPSQVLVKPLSGE-SKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFD-N  219 (254)
Q Consensus       142 ~~~~~~~v~~~~~~-~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~-~  219 (254)
                      +-|..+++||+.+. .  ....+. .+..-+..+.+.. ..++.++.|++|++||..++++.++.-..+.+...+... .
T Consensus       389 s~D~~IkvWdl~~~~~--c~~tl~-~h~~~v~~l~~~~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~  464 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRK--CIHTLQ-GHTSLVSSLLLRD-NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGK  464 (537)
T ss_pred             eeccceEeecCCchhh--hhhhhc-CCccccccccccc-ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCc
Confidence            33567999999887 3  222222 2333455566552 345556779999999999999877765411122222222 2


Q ss_pred             ceEEEEEeCCeeEEEEeecC
Q psy12788        220 VTVCLVFNAGELSIIEYGNN  239 (254)
Q Consensus       220 ~~~~~~~~~g~~~~~~~~~~  239 (254)
                      +.+....++|.+.+..+...
T Consensus       465 ~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             ceEEEEecCCeeEEEecccC
Confidence            45555555576666655533

>KOG0282|consensus

Probab=99.79  E-value=1.4e-18  Score=152.54  Aligned_cols=180  Identities=18%  Similarity=0.157  Sum_probs=132.3

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l   76 (254)
                      .+.+|..+|.++.|++  ..++|+|.|+.+++|| ++|+++..|.      ....++|+.|+||+ +.|++|..|+ |+.
T Consensus       253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe------cCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence            4578999999999997  4799999999999999 9999998874      23578999999999 7888998885 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------------  133 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------------  133 (254)
                      ||.+...- .++    --.|.+.|.++.|=|+|+++++.+.|++++||+....-.+.                       
T Consensus       327 wDiRs~kv-vqe----Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  327 WDIRSGKV-VQE----YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             EeccchHH-HHH----HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence            99765331 111    12356789999999999999999999999999853221100                       


Q ss_pred             -----------------------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCcee
Q psy12788        134 -----------------------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEIT  172 (254)
Q Consensus       134 -----------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~  172 (254)
                                                               ++.|.++-.+++.+..||..+.   ..+.....+...+.
T Consensus       402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSKLKAHDQPCI  478 (503)
T ss_pred             hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh---hhhhccccCCcceE
Confidence                                                     0111222233456777777665   23333334456788


Q ss_pred             EEEEecCc--EEEEEECCCcEEEEe
Q psy12788        173 DVAIMGND--RYLVARTPDTLLLGD  195 (254)
Q Consensus       173 ~i~~~~~~--~~~v~~~d~~i~i~d  195 (254)
                      .+.++|..  +.++++-++.|+|||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            88888755  577778899999986

>KOG0319|consensus

Probab=99.78  E-value=3.5e-18  Score=156.46  Aligned_cols=187  Identities=9%  Similarity=0.118  Sum_probs=140.4

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEeCCC----C--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYESDG----R--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~g----~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      +..+|+..|.+|+.+.   ..|+++|.|+++++|+...    .  ...+..+... .|+..|++++.+|+.+++|+||.|
T Consensus       406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~-aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER-AHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH-hhcccccceEecCCCceEEecccc
Confidence            4568999999999974   5899999999999998222    1  1111123333 689999999999999999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------ec
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KG  135 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~  135 (254)
                      + .+||++..  ....   .....|...|.+|.|+|..+.+|++|.|++|+||.+.+..+..                .+
T Consensus       485 ktaKiW~le~--~~l~---~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  485 KTAKIWDLEQ--LRLL---GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             cceeeecccC--ceEE---EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence            6 89999762  1111   2234677899999999999999999999999999975443321                23


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEE-ecc
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLG-DLH  197 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~-dl~  197 (254)
                      .+.+..-+++-+++|++.++.  +...+ ..|.+.|..++.++.+. +++|+.|+.+.+| |..
T Consensus       560 ~qliS~~adGliKlWnikt~e--C~~tl-D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNE--CEMTL-DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cEEEeccCCCcEEEEeccchh--hhhhh-hhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            344555567889999999884  33333 24567899999998664 6678999999999 643

>KOG0643|consensus

Probab=99.78  E-value=1.9e-16  Score=130.49  Aligned_cols=205  Identities=12%  Similarity=0.106  Sum_probs=154.4

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|.-++..+.++.  ++|.||+.|.++.||= .+|+.+.+++     +|.+.|.|+..+-+.+.+++|+.|. ++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-----GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-----GHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-----CCCceEEEEEecCCcceeeeccccceeEEE
Confidence            3679999999999985  7999999999999998 6999997775     9999999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-----CCcEEEEeeee-------eeeEe------------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-----CGSVELFESVL-------KRTIW------------  133 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-----dg~v~iwd~~~-------~~~~~------------  133 (254)
                      |....+..      ...+...+|..+.|+++|++++..+.     .+.|.++|++.       ..+..            
T Consensus        80 Dv~tGk~l------a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a  153 (327)
T KOG0643|consen   80 DVETGKQL------ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA  153 (327)
T ss_pred             EcCCCcEE------EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence            98765542      23344568999999999999887763     46788898751       11110            


Q ss_pred             ----eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeEeCCC
Q psy12788        134 ----KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPD  208 (254)
Q Consensus       134 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~~~~~  208 (254)
                          .+.+.++...++.+..||+.+|.  ..+.....++..|+.++++++.. |++++.|.+.++||+.+-.+.      
T Consensus       154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~------  225 (327)
T KOG0643|consen  154 LWGPLGETIIAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL------  225 (327)
T ss_pred             eecccCCEEEEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE------
Confidence                12345555567789999999883  22222235667899999999774 667888999999999886542      


Q ss_pred             CCCceeEEeeCceEEEEEeCC
Q psy12788        209 SGRNEKFYFDNVTVCLVFNAG  229 (254)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~g  229 (254)
                          ..|..+-|.-|.++++-
T Consensus       226 ----Kty~te~PvN~aaisP~  242 (327)
T KOG0643|consen  226 ----KTYTTERPVNTAAISPL  242 (327)
T ss_pred             ----EEeeecccccceecccc
Confidence                33444445555556553

>PTZ00420 coronin; Provisional

Probab=99.76  E-value=1.3e-15  Score=141.92  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=111.2

Q ss_pred             EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEEEEecCCCccee---ecCceecC
Q psy12788         22 AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLFAWSPSKSVWE---EQPNKTIP   95 (254)
Q Consensus        22 s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l~d~~~~~~~~~---~~~~~~~~   95 (254)
                      .||.++.|++|+ .....+..+    . +|...|.+++|+|+ +++||+|+.|+ ++|||+........   ........
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L----~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g  123 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKL----K-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG  123 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEE----c-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence            366788899998 344445444    3 89999999999997 88999999996 99999754221100   00011234


Q ss_pred             CCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         96 NLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      |...|++|+|+|++.. ||+|+.||.|++||+..++....               +...++...++++++||+.++.  .
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~  201 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--I  201 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--E
Confidence            6678999999999986 47899999999999876543221               1222333346789999999884  2


Q ss_pred             eEEEEecCCCceeE-----EEEecCcE-EEEEECC----CcEEEEeccC
Q psy12788        160 GVILKSQYGYEITD-----VAIMGNDR-YLVARTP----DTLLLGDLHR  198 (254)
Q Consensus       160 ~~~l~s~~~~~i~~-----i~~~~~~~-~~v~~~d----~~i~i~dl~~  198 (254)
                      ...+..+. +.+..     ..|++++. +++++.+    ++++|||++.
T Consensus       202 i~tl~gH~-g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        202 ASSFHIHD-GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEeccc-CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            22233332 33322     23346655 4555555    3799999995

>KOG0303|consensus

Probab=99.76  E-value=4.9e-17  Score=140.09  Aligned_cols=202  Identities=13%  Similarity=0.209  Sum_probs=137.0

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEee---ecCCCCCCCCEEEEEECCCC-CEEEEEeCC-c
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFD---YTAPHYKEREFTVACSSPSG-QAVVVGSYD-N   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~---~~~~~~~~~~v~~~a~sPdg-~~la~gs~d-~   73 (254)
                      +.+|+.+|..++|+|   +.|||||+|.+|+||+ .++.+...+.   ..+. +|...|.-++|||.. +.|++++.| .
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhccCCce
Confidence            568999999999998   3699999999999998 4432221111   1233 899999999999975 456677667 5


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +.+|+..+...      ...+.|...|++++|+.||++|++.+.|+.|||||.+.++....+.                 
T Consensus       156 v~iWnv~tgea------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-----------------  212 (472)
T KOG0303|consen  156 VSIWNVGTGEA------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-----------------  212 (472)
T ss_pred             EEEEeccCCce------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-----------------
Confidence            89999765443      3345588899999999999999999999999999987776554321                 


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEEE----CCCcEEEEeccCCc--eeeEeCCCCCCceeEEeeCceEEEEEe
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVAR----TPDTLLLGDLHRNL--LSEVLWPDSGRNEKFYFDNVTVCLVFN  227 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~----~d~~i~i~dl~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~  227 (254)
                                 .+.|..-..+.|-+++.+++.+    +++.+-|||-..-.  +....-..++ ...|.|.++...|++-
T Consensus       213 -----------~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl  280 (472)
T KOG0303|consen  213 -----------AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYL  280 (472)
T ss_pred             -----------cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEE
Confidence                       1122333334444455555432    36678889755322  1111112122 2566777777777776


Q ss_pred             C----CeeEEEEeecCe
Q psy12788        228 A----GELSIIEYGNNE  240 (254)
Q Consensus       228 ~----g~~~~~~~~~~~  240 (254)
                      .    +.+..+|+.+.+
T Consensus       281 ~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  281 CGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EecCCcceEEEEecCCC
Confidence            6    347788888765

>KOG4283|consensus

Probab=99.76  E-value=1.3e-16  Score=133.27  Aligned_cols=219  Identities=14%  Similarity=0.194  Sum_probs=144.3

Q ss_pred             cCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC---EEEEEeCC-cEEE
Q psy12788          5 QHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ---AVVVGSYD-NIKL   76 (254)
Q Consensus         5 ~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~---~la~gs~d-~i~l   76 (254)
                      +|...|..+.|-|   .++.++|.|.++|||| .+-+....|.      .++.|++-++||-..   ++|+|..| .+||
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~~VrL  172 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL  172 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee------cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence            6888999999988   4799999999999999 4444444443      346799999999643   57778777 5999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      +|+....  ..+   ....|...|.++.|||...+ ||+|+.||.|++||++-    ..+-          .++.|...+
T Consensus       173 CDi~SGs--~sH---~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr----asgc----------f~~lD~hn~  233 (397)
T KOG4283|consen  173 CDIASGS--FSH---TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR----ASGC----------FRVLDQHNT  233 (397)
T ss_pred             EeccCCc--cee---eeccccCceEEEEeccCceeEEEecCCCceEEEEEeec----ccce----------eEEeecccC
Confidence            9975432  222   23457789999999999876 78999999999999851    1111          223333332


Q ss_pred             CceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCceeeEeCCC--CCCceeE-----EeeCceEEEEEe
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLSEVLWPD--SGRNEKF-----YFDNVTVCLVFN  227 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~~~~~~~--~~g~~~~-----~~~~~~~~~~~~  227 (254)
                      ...+.+.....+.+.++.++++.++++ +.+++|+.+++|+.+.|.-..+++-+  .+.+.-|     ..+.+....+-+
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~  313 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPN  313 (397)
T ss_pred             ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEec
Confidence            110112223345568999999988765 56889999999999999866665542  1111111     122233334444


Q ss_pred             CCeeEEEEeecCeeeeeeecC
Q psy12788        228 AGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       228 ~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      .+.+.|...+..+.+-...|+
T Consensus       314 ~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  314 DGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             CCeEEEEEccCceEEEeeecc
Confidence            456666665555555555554

>KOG0283|consensus

Probab=99.76  E-value=2.3e-17  Score=152.92  Aligned_cols=159  Identities=16%  Similarity=0.184  Sum_probs=120.6

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC--------------------------------C---C---------
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD--------------------------------G---R---------   37 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~--------------------------------g---~---------   37 (254)
                      .|.+.|+++.|+++  +||+||+|+.||||. .+                                .   +         
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            79999999999985  899999999999997 33                                0   0         


Q ss_pred             -EEEEee-----------ecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEE
Q psy12788         38 -VHRIFD-----------YTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS  104 (254)
Q Consensus        38 -~~~~~~-----------~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~  104 (254)
                       +-..+.           +... ||...|-.++||-++ +|+++|+|+ +|||+......      .+.+.|...||||+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C------L~~F~HndfVTcVa  416 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC------LKVFSHNDFVTCVA  416 (712)
T ss_pred             CccccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCcce------eeEEecCCeeEEEE
Confidence             000000           1123 688899999999865 778999995 99999754332      45577888999999


Q ss_pred             Eec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE
Q psy12788        105 WKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL  183 (254)
Q Consensus       105 ~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~  183 (254)
                      |+| |.+|+++|+.||.||||++.                +.              +++.......-|+++.+.|+++++
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~----------------d~--------------~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSIS----------------DK--------------KVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             ecccCCCcEeecccccceEEeecC----------------cC--------------eeEeehhhhhhheeEEeccCCceE
Confidence            999 78999999999999999863                21              222222333569999999999886


Q ss_pred             E-EECCCcEEEEeccCCce
Q psy12788        184 V-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       184 v-~~~d~~i~i~dl~~~~~  201 (254)
                      + |+-++.+++++....++
T Consensus       467 vIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             EEEEeccEEEEEEccCCeE
Confidence            5 55589999999887664

>KOG1407|consensus

Probab=99.76  E-value=1.4e-16  Score=130.91  Aligned_cols=185  Identities=15%  Similarity=0.244  Sum_probs=126.6

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l   76 (254)
                      .+.+|..+|.+|+|+-  ..|++|+.|+++++|+ ..++....+.+  . +|...|-.++|+|. ..+||+++.|+ +|+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~--~-gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY--R-GHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcc--c-CCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            4568999999999975  4799999999999999 43444433332  3 78888999999885 67899998885 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-----EEEEecCCe-----
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-----EMIYVSPSQ-----  146 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~~~~-----  146 (254)
                      ||....+..      ..+...+.=.-+.|||||+++|+++.|..|...|.+..+.....+|     ++++.-++.     
T Consensus        92 wd~r~~k~~------~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   92 WDIRSGKCT------ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEeccCcEE------EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence            998654432      2233333334589999999999999999999999987766543322     233332222     


Q ss_pred             -----EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccC
Q psy12788        147 -----VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHR  198 (254)
Q Consensus       147 -----~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~  198 (254)
                           +.|.....=+  +-..+. .|.....+|.|+|+++|+ +|+.|-.+-+||+..
T Consensus       166 ~GlG~v~ILsypsLk--pv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLK--PVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             cCCceEEEEeccccc--cccccc-cCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence                 2222221110  111121 223456688899999765 577788999999884

>KOG0275|consensus

Probab=99.76  E-value=7.9e-18  Score=142.06  Aligned_cols=213  Identities=13%  Similarity=0.218  Sum_probs=145.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.-|..+|.++.|+.+  +|++|+.|+.|++|. .+|.|++.|+   . .|...|+|+.||.|+..+.++++|. +|+.-
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---r-AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---R-AHTKGVTCLSFSRDNSQILSASFDQTVRIHG  334 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---h-hhccCeeEEEEccCcchhhcccccceEEEec
Confidence            4457889999999874  899999999999999 9999998886   2 6888999999999999999999995 89988


Q ss_pred             ecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec-----ee--------------E
Q psy12788         79 WSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG-----KF--------------E  138 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~-----~~--------------~  138 (254)
                      +...+.      .++ ..|...|+...|++||.++++++.||+|++|+..+..+...-     .+              .
T Consensus       335 lKSGK~------LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  335 LKSGKC------LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             cccchh------HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence            654332      223 356778999999999999999999999999998665543210     01              0


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEec-----CCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeEeCCCCCCc
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQ-----YGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEVLWPDSGRN  212 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~~~~~~~g~  212 (254)
                      +.....+.+.+.++..      .++++.     .|+.-.+-.++|.+.|+- .+.|+-++.+...+|++.....    .+
T Consensus       409 iVCNrsntv~imn~qG------QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~----Vh  478 (508)
T KOG0275|consen  409 IVCNRSNTVYIMNMQG------QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP----VH  478 (508)
T ss_pred             EEEcCCCeEEEEeccc------eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee----cc
Confidence            1111122333333311      122221     133444555677777654 5667777778888887632211    11


Q ss_pred             eeEEeeCceEEEEEeCCeeEEEEeecCe
Q psy12788        213 EKFYFDNVTVCLVFNAGELSIIEYGNNE  240 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~  240 (254)
                      |     .+...+.+.+....+..|+.+.
T Consensus       479 E-----kdvIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  479 E-----KDVIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             c-----ccccccccCcccchhhhhcccc
Confidence            1     2245566666666666666543

>KOG0274|consensus

Probab=99.76  E-value=5.9e-17  Score=150.13  Aligned_cols=184  Identities=14%  Similarity=0.197  Sum_probs=145.5

Q ss_pred             cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +.+|...+.++...+..+++||.|.+|++|+ .+|.+++.+.     +|..+|.++..+  +.++++|+.|+ +++||..
T Consensus       287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             ecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEec-----cccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            5689999999999998999999999999999 8899997765     688999999998  88999999996 9999976


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-eeEe--------------eceeEEEEecCC
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-RTIW--------------KGKFEMIYVSPS  145 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-~~~~--------------~~~~~~~~~~~~  145 (254)
                      ..+..     .....|...|+++.+.+. +++++|+.|++|++||+.++ +++.              ..++.+....++
T Consensus       360 ~~~cl-----~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  360 TGKCL-----KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADG  433 (537)
T ss_pred             hceee-----eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccc
Confidence            43321     122347789999987555 99999999999999999887 5432              234555666788


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ++++||..+++  ....+...+-..|..+++. ++.+++++.++++++||+++++..
T Consensus       434 ~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  434 TIKLWDAEEGE--CLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cEEEeecccCc--eeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchh
Confidence            99999999885  4444433222456666665 567889999999999999998753

>KOG0289|consensus

Probab=99.75  E-value=1.8e-16  Score=137.93  Aligned_cols=179  Identities=15%  Similarity=0.162  Sum_probs=138.3

Q ss_pred             CCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          9 PPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         9 ~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      .+.++.-.+  +.+++||.|.++.++| ..++.+..|.     ||...|+.+.|+|+...+++++.|. +|+|..-....
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-----Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-----GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-----CcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            345555555  6899999999999999 6677776664     8999999999999999999999995 89998543221


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee------------------ceeEEEEecCCe
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK------------------GKFEMIYVSPSQ  146 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~------------------~~~~~~~~~~~~  146 (254)
                           ......|+.+|+.+..+|.|.||++++.||.....|.+.++....                  +....++..++.
T Consensus       296 -----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~  370 (506)
T KOG0289|consen  296 -----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV  370 (506)
T ss_pred             -----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence                 133466888999999999999999999999999999887765421                  111234556789


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCCcEEEEeccCCc
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNL  200 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~~i~i~dl~~~~  200 (254)
                      +++||+.+.+   ...-...+..+|..|+|+.++.|++. +.|+.+++|||+.-+
T Consensus       371 vkiwdlks~~---~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  371 VKIWDLKSQT---NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             EEEEEcCCcc---ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            9999998873   23333445668999999999988765 455569999998655

>KOG0310|consensus

Probab=99.75  E-value=1.5e-16  Score=140.08  Aligned_cols=193  Identities=14%  Similarity=0.196  Sum_probs=141.9

Q ss_pred             ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l   76 (254)
                      .+..|+.+|..+.|+|+   .|++|+.|+.+++||.++...+   +.+. +|++.|.|.+|+|. +.++++||+|+ +|+
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~---~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ---AELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE---EEec-CCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            35689999999999873   6999999999999994443332   2334 89999999999996 45899999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      ||..... .+    ..++.|..+|.++.+=|.|++||+++ ...|++||+..++                          
T Consensus       181 ~DtR~~~-~~----v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~--------------------------  228 (487)
T KOG0310|consen  181 WDTRSLT-SR----VVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG--------------------------  228 (487)
T ss_pred             EEeccCC-ce----eEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc--------------------------
Confidence            9965543 22    45677888999999999999999987 4578888875332                          


Q ss_pred             ceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCC-eeEEE
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAG-ELSII  234 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g-~~~~~  234 (254)
                        +.+.....|--+|+++.+..++ ++++++-|+.++++|+.+-|+. ..|         .+.+++.+|..+++ +..++
T Consensus       229 --qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv-~s~---------~~~~pvLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  229 --QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV-HSW---------KYPGPVLSIAVSPDDQTVVI  296 (487)
T ss_pred             --eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE-Eee---------ecccceeeEEecCCCceEEE
Confidence              1122222244589999998765 6888999999999997766642 122         23456788888884 46666


Q ss_pred             EeecCeee
Q psy12788        235 EYGNNEIL  242 (254)
Q Consensus       235 ~~~~~~~~  242 (254)
                      +.++.-++
T Consensus       297 GmsnGlv~  304 (487)
T KOG0310|consen  297 GMSNGLVS  304 (487)
T ss_pred             ecccceee
Confidence            66654433

>KOG0973|consensus

Probab=99.75  E-value=1.2e-16  Score=151.58  Aligned_cols=214  Identities=14%  Similarity=0.142  Sum_probs=146.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCC--------C-----------EEEEeeecCCCCCCCCEEEEEECC
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDG--------R-----------VHRIFDYTAPHYKEREFTVACSSP   61 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g--------~-----------~~~~~~~~~~~~~~~~v~~~a~sP   61 (254)
                      +..|...|.|+-|+++  +||+||+|+.|.||++.+        .           +..    .+. +|+..|..++|+|
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~----~l~-~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVS----ILR-GHDSDVLDVNWSP  139 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEE----EEe-cCCCccceeccCC
Confidence            4579999999999985  899999999999998441        1           232    233 8999999999999


Q ss_pred             CCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee--eEeecee-
Q psy12788         62 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR--TIWKGKF-  137 (254)
Q Consensus        62 dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~--~~~~~~~-  137 (254)
                      ++.+||+++.|+ |.+|+-.+.    +. ......|+..|-.++|-|-|+|||+-+.|+++++|++..-.  ..-.++| 
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF----~~-~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~  214 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTF----EL-LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE  214 (942)
T ss_pred             CccEEEEecccceEEEEccccc----ee-eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence            999999999995 889994433    11 13345677899999999999999999999999999953211  1111222 


Q ss_pred             ---------EEEEecCCeEEEEeCCCCCc------------eeeEEEEecCCCceeEEEEecC------c----------
Q psy12788        138 ---------EMIYVSPSQVLVKPLSGESK------------GRGVILKSQYGYEITDVAIMGN------D----------  180 (254)
Q Consensus       138 ---------~~~~~~~~~~~v~~~~~~~~------------~~~~~l~s~~~~~i~~i~~~~~------~----------  180 (254)
                               -+.+++|++.+...-+..+.            .....+-. |..+++.+.|+|.      .          
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcc
Confidence                     12345555544332221110            01122222 2347899999752      1          


Q ss_pred             --EEEEEECCCcEEEEeccCCc------------eeeEeCCCCCCceeEEe--eCceEEEEEeC
Q psy12788        181 --RYLVARTPDTLLLGDLHRNL------------LSEVLWPDSGRNEKFYF--DNVTVCLVFNA  228 (254)
Q Consensus       181 --~~~v~~~d~~i~i~dl~~~~------------~~~~~~~~~~g~~~~~~--~~~~~~~~~~~  228 (254)
                        -.++|+.|++|.||.....+            +.++.|+ ++|-..|..  |+.++++.|..
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs-pdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS-PDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc-CCCCeEEEEecCCeEEEEEcch
Confidence              12457889999999876443            6699999 888877743  44445555544

>KOG1332|consensus

Probab=99.75  E-value=2.6e-17  Score=134.13  Aligned_cols=202  Identities=16%  Similarity=0.299  Sum_probs=136.8

Q ss_pred             ccccCCCCCEEEEec-C---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-
Q psy12788          2 RVVQHPVPPYALSWP-A---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~-~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-   73 (254)
                      .|.+|.+||..++|. |   ..|||++.|++|.||. .+|+=.+.  +... .|...|++++|.|.  |-+||.|+.|+ 
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~--~e~~-~h~~SVNsV~wapheygl~LacasSDG~  127 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA--YEHA-AHSASVNSVAWAPHEYGLLLACASSDGK  127 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh--hhhh-hhcccceeecccccccceEEEEeeCCCc
Confidence            378999999999996 4   5799999999999999 55532222  3333 68889999999996  67899999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecC---C-----------CeEEEeecCCcEEEEeeeeeeeEeeceeEE
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD---G-----------SRIACGGLCGSVELFESVLKRTIWKGKFEM  139 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---G-----------~~la~g~~dg~v~iwd~~~~~~~~~~~~~~  139 (254)
                      +.|.+.+.. +.|.. ......|.-.|++++|.|-   |           ++|++|+.|..|+||+...++-..+.    
T Consensus       128 vsvl~~~~~-g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~----  201 (299)
T KOG1332|consen  128 VSVLTYDSS-GGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER----  201 (299)
T ss_pred             EEEEEEcCC-CCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh----
Confidence            999988764 45543 1333456778999999997   6           77999999999999986433111000    


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC-----cEEEEEECCCcEEEEeccCCceeeEeCCCCCCcee
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN-----DRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEK  214 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~-----~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~  214 (254)
                                            .|. .|.+.|+.+++.|.     ..++.++.|+++.||-... ..  =.|. .  .-.
T Consensus       202 ----------------------~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e~--e~wk-~--tll  252 (299)
T KOG1332|consen  202 ----------------------TLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-EY--EPWK-K--TLL  252 (299)
T ss_pred             ----------------------hhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-cc--Cccc-c--ccc
Confidence                                  011 23356788888764     2466788899999996552 10  1232 1  111


Q ss_pred             EEeeCceEEEEEeC-CeeEEEEeecCee
Q psy12788        215 FYFDNVTVCLVFNA-GELSIIEYGNNEI  241 (254)
Q Consensus       215 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~  241 (254)
                      -.|....-.+-|+- |.++-+.+|+|.+
T Consensus       253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  253 EEFPDVVWRVSWSLSGNILAVSGGDNKV  280 (299)
T ss_pred             ccCCcceEEEEEeccccEEEEecCCcEE
Confidence            12344455566666 6666667776654

>KOG0305|consensus

Probab=99.75  E-value=5.3e-17  Score=146.60  Aligned_cols=184  Identities=15%  Similarity=0.158  Sum_probs=140.2

Q ss_pred             ccc-CCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQ-HPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~-h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+ |...|.+++|....+.+|+.|+.|..+| +..+....   .+. +|..+|..++|+||++++|+|+.|+ +.|||.
T Consensus       255 ~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~---~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS---TLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh---hhh-cccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            345 8999999999998999999999999999 65544322   123 7899999999999999999999995 889995


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEee--cCCcEEEEeeeeeeeEee-------------cee-EE-EE
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGG--LCGSVELFESVLKRTIWK-------------GKF-EM-IY  141 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~--~dg~v~iwd~~~~~~~~~-------------~~~-~~-~~  141 (254)
                      .....     .....+|...|.+++|+| ...+||+|+  .|+.|++||..+++.+..             ..+ |+ +-
T Consensus       331 ~~~~p-----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  331 LSPEP-----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             CCccc-----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence            32221     133456788999999999 467888876  699999999887655421             111 12 11


Q ss_pred             --ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        142 --VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       142 --~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                        -+++++.||...+-   ..+.....|..+|..++++|++. +++|+.|.|+++|++-.
T Consensus       406 hG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             cCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence              13568999999876   45555566677899999999875 56688899999999765

>KOG0278|consensus

Probab=99.75  E-value=1.2e-17  Score=136.59  Aligned_cols=184  Identities=13%  Similarity=0.161  Sum_probs=138.0

Q ss_pred             CccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          1 GRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      |.+.+|.+.|+....+.+  .-++++.|-+.+||| .+|..+.+|      .|...|.+++|+.|.++|++|++++ +|+
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf------~hkhivk~~af~~ds~~lltgg~ekllrv  126 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF------EHKHIVKAVAFSQDSNYLLTGGQEKLLRV  126 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh------hhhheeeeEEecccchhhhccchHHHhhh
Confidence            457899999999888875  578899999999999 789888555      4777899999999999999999998 799


Q ss_pred             EEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee--------------EEEE
Q psy12788         77 FAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF--------------EMIY  141 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~--------------~~~~  141 (254)
                      ||.+.....     .+++ .|.+.|..+-|....+.|++++.|++||+||.+++.....-.|              .++.
T Consensus       127 fdln~p~Ap-----p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278|consen  127 FDLNRPKAP-----PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             hhccCCCCC-----chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE
Confidence            997643321     3343 3567899999999999999999999999999988754432211              1233


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKS-QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      ...+.++.||..+=+     +|++ .....|++-.++|+.. |++++.|..++.+|..+|.
T Consensus       202 a~gssV~Fwdaksf~-----~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  202 AYGSSVKFWDAKSFG-----LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             ecCceeEEecccccc-----ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence            344567777776532     3333 2344688888888654 5556678888889988875

>KOG0267|consensus

Probab=99.75  E-value=2e-18  Score=157.77  Aligned_cols=160  Identities=14%  Similarity=0.226  Sum_probs=124.2

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      |.+|..+|-+|.|+.  .+|++|+.|++||+|| +.++.+++|.     +|...+.++.|+|-|.++|.|+.|+ +++||
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD  140 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----GHLLNITSVDFHPYGEFFASGSTDTDLKIWD  140 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-----ccccCcceeeeccceEEeccccccccceehh
Confidence            578999999999987  3788999999999999 7888886664     8888999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ......  ..   ....|...|..+.|+|||++++.|+.|..++|||..-|+...+      |.                
T Consensus       141 ~Rk~Gc--~~---~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e------f~----------------  193 (825)
T KOG0267|consen  141 IRKKGC--SH---TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE------FK----------------  193 (825)
T ss_pred             hhccCc--ee---eecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc------cc----------------
Confidence            543222  11   1122556789999999999999999999999999754443311      11                


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCce
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~  201 (254)
                             .+...|..+.|+|.+.++ .++.|+++++||+++-.+
T Consensus       194 -------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  194 -------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             -------cccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence                   123456777777766554 478899999999997654

>KOG0640|consensus

Probab=99.75  E-value=6.3e-17  Score=135.86  Aligned_cols=167  Identities=20%  Similarity=0.258  Sum_probs=127.0

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC------------CC------EEEEeeecCCCCCCCCEEEEEEC
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD------------GR------VHRIFDYTAPHYKEREFTVACSS   60 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~------------g~------~~~~~~~~~~~~~~~~v~~~a~s   60 (254)
                      .|..|+.++.+-+|+++  ++++||.|..|+|.| +.            |.      .+++| |    .|.++|+++.|+
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-Y----DH~devn~l~FH  181 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-Y----DHVDEVNDLDFH  181 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-h----hccCcccceeec
Confidence            36789999999999985  799999999999998 41            11      23333 2    578899999999


Q ss_pred             CCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEE
Q psy12788         61 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEM  139 (254)
Q Consensus        61 Pdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~  139 (254)
                      |..+.|++|+.|+ +++||++...-.   ...+-+...++|.+++|+|.|.+|++|..--.+++||+.+-++....    
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saK---rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----  254 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAK---RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----  254 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHH---HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec----
Confidence            9999999999995 999998632211   01223344568999999999999999999999999998765433110    


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                        .++                    ..+...|++|..++.++ |++|+.|+.|+|||--+++|.
T Consensus       255 --nPd--------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  255 --NPD--------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCV  296 (430)
T ss_pred             --Ccc--------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHH
Confidence              011                    12346799999998775 788999999999998877654

>KOG0288|consensus

Probab=99.74  E-value=4.7e-17  Score=140.75  Aligned_cols=204  Identities=16%  Similarity=0.163  Sum_probs=145.1

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      |.+-.+++.+++++++  .+++++.|+++++|| .+++.+.+|.     +|.+.|+++.|...-..+++|+.|+ +++||
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-----GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD  289 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS-----GHTDKVTAAKFKLSHSRVVSGSADRTIKLWD  289 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc-----ccccceeeehhhccccceeeccccchhhhhh
Confidence            4556678999999863  688999999999999 6778775554     8999999999998776699999996 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------eceeEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGKFEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~~~~~~~~  143 (254)
                      +.....      .+..-....+.+|.-+  +..+++|-.|++|+.||.+......               ++.-.++++.
T Consensus       290 l~k~~C------~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  290 LQKAYC------SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             hhhhhe------eccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecC
Confidence            754222      1222223456667666  6788999999999999976543322               1223445666


Q ss_pred             CCeEEEEeCCCCCceeeEEEEe---cCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeEeCCCCCCceeEEeeC
Q psy12788        144 PSQVLVKPLSGESKGRGVILKS---QYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDN  219 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s---~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~  219 (254)
                      +..+.+.|+.+.+  -+...+.   ..++..+.+.|||++.|++ |+.|+.++||++.++|+..+.=. +.-+      .
T Consensus       362 Ddtl~viDlRt~e--I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~------~  432 (459)
T KOG0288|consen  362 DDTLKVIDLRTKE--IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSN------A  432 (459)
T ss_pred             CCceeeeeccccc--EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCC------c
Confidence            7788888988774  2222222   1245688999999998876 55699999999999997544322 1111      1


Q ss_pred             ceEEEEEeC
Q psy12788        220 VTVCLVFNA  228 (254)
Q Consensus       220 ~~~~~~~~~  228 (254)
                      .+.|+.|++
T Consensus       433 aI~s~~W~~  441 (459)
T KOG0288|consen  433 AITSLSWNP  441 (459)
T ss_pred             ceEEEEEcC
Confidence            367888887

>KOG0277|consensus

Probab=99.73  E-value=1.2e-16  Score=130.90  Aligned_cols=183  Identities=12%  Similarity=0.100  Sum_probs=132.3

Q ss_pred             CCCEEEEecC---CeEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEEEEec
Q psy12788          8 VPPYALSWPA---GYILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l~d~~   80 (254)
                      ...+.|+|++   +.+++|+-||++++||  ....+++.++     .|..+|.++.|++- ++.++++|+|+ ++||+-+
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH-----hhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            4578999987   5799999999999999  3345675443     79999999999985 56788889995 9999965


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      .....     ....+|.+.|....||| +++.+|+++.||.+++||++.                         .|   .
T Consensus       136 r~~Sv-----~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~-------------------------~g---k  182 (311)
T KOG0277|consen  136 RPNSV-----QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS-------------------------PG---K  182 (311)
T ss_pred             CCcce-----EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC-------------------------CC---c
Confidence            43322     22455778899999999 488999999999999999742                         11   1


Q ss_pred             eEEEEecCCCceeEEEEecCc-E-EEEEECCCcEEEEeccCCc------------eeeEeCCCCCCceeEEeeCceEEEE
Q psy12788        160 GVILKSQYGYEITDVAIMGND-R-YLVARTPDTLLLGDLHRNL------------LSEVLWPDSGRNEKFYFDNVTVCLV  225 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~-~-~~v~~~d~~i~i~dl~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~  225 (254)
                      .+.+ ..+..+|.+-.++.-+ . +++++.|+.|++||++.-+            +..|+|++....-.-....+.++.+
T Consensus       183 ~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  183 FMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             eeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence            2222 2234577777776433 3 4457779999999998643            3467777433333445567788889


Q ss_pred             EeCC
Q psy12788        226 FNAG  229 (254)
Q Consensus       226 ~~~g  229 (254)
                      |+..
T Consensus       262 w~~~  265 (311)
T KOG0277|consen  262 WDPE  265 (311)
T ss_pred             cccc
Confidence            9883

>KOG0647|consensus

Probab=99.73  E-value=9.2e-16  Score=128.34  Aligned_cols=210  Identities=15%  Similarity=0.240  Sum_probs=136.4

Q ss_pred             CCCEEEEecC---CeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          8 VPPYALSWPA---GYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      ..|.+|+|+|   .+|+++|.|++||+|+ . +|.....-   .. .|+.+|.+++|+-||..+++|+.|+ +++||+..
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka---~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA---QQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchh---hh-ccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            4689999998   3577899999999999 4 45544211   12 5788999999999999999999996 99999865


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCC--eEEEeecCCcEEEEeeeeeeeEe-----ecee--------EEEEecCCe
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGS--RIACGGLCGSVELFESVLKRTIW-----KGKF--------EMIYVSPSQ  146 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~--~la~g~~dg~v~iwd~~~~~~~~-----~~~~--------~~~~~~~~~  146 (254)
                      .+.      ...-.|..+|..+.|=+-..  .|++|+-|++++.||++....+.     +..|        .+....+..
T Consensus       104 ~Q~------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~  177 (347)
T KOG0647|consen  104 GQV------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERH  177 (347)
T ss_pred             CCe------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCc
Confidence            432      12234778999999977666  89999999999999986432211     0111        112222233


Q ss_pred             EEEEeC--------------------------------------------CCCCceeeEEEEecC------C--CceeEE
Q psy12788        147 VLVKPL--------------------------------------------SGESKGRGVILKSQY------G--YEITDV  174 (254)
Q Consensus       147 ~~v~~~--------------------------------------------~~~~~~~~~~l~s~~------~--~~i~~i  174 (254)
                      +.++.|                                            ..+.....+.++.+-      +  ..|++|
T Consensus       178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            333332                                            221000122222211      1  258889


Q ss_pred             EEecC-cEEEEEECCCcEEEEeccCCc-eeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEee
Q psy12788        175 AIMGN-DRYLVARTPDTLLLGDLHRNL-LSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYG  237 (254)
Q Consensus       175 ~~~~~-~~~~v~~~d~~i~i~dl~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~  237 (254)
                      +|+|. +.++++++|+++.+||-..+. +....          ..+.++.|-.||. |.+..+..|
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~----------~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE----------THPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EeecccceEEEecCCceEEEecchhhhhhhccC----------cCCCccceeEecCCCCEEEEEee
Confidence            99985 468889999999999966542 21111          1134567777777 776665554

>KOG0269|consensus

Probab=99.73  E-value=4.9e-17  Score=149.70  Aligned_cols=160  Identities=14%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l   76 (254)
                      +..|.-.+..|+|++   ++|+|||+|++||+|| +......++.     +....|..|+|+|. +.+||++...+ +++
T Consensus       129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----~nSESiRDV~fsp~~~~~F~s~~dsG~lql  203 (839)
T KOG0269|consen  129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----SNSESIRDVKFSPGYGNKFASIHDSGYLQL  203 (839)
T ss_pred             hhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----ccchhhhceeeccCCCceEEEecCCceEEE
Confidence            356888999999974   6899999999999999 6555555553     44567999999995 67888888777 899


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      ||+..-. .|.   .+...|.++|.++.|+|++.+||+|+.|+.|+|||.-..+..                        
T Consensus       204 WDlRqp~-r~~---~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~------------------------  255 (839)
T KOG0269|consen  204 WDLRQPD-RCE---KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK------------------------  255 (839)
T ss_pred             eeccCch-hHH---HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc------------------------
Confidence            9975321 221   345568899999999999999999999999999996322211                        


Q ss_pred             ceeeEEEEecCCCceeEEEEecCcEEEEE--E--CCCcEEEEeccCC
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGNDRYLVA--R--TPDTLLLGDLHRN  199 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~~~~v~--~--~d~~i~i~dl~~~  199 (254)
                        ....+  ....+|..|+|-|.-++..|  +  -|..|.|||++..
T Consensus       256 --~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  256 --PKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             --ceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence              22222  33567889999886555333  2  2679999999854

>KOG0278|consensus

Probab=99.73  E-value=1.7e-16  Score=129.89  Aligned_cols=160  Identities=14%  Similarity=0.097  Sum_probs=127.9

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEe
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~   79 (254)
                      +.+|+..|..+-|..  +.|+|++.|++||+|| ++|...+++.      ...+|+++..++||++|.++....+..||.
T Consensus       139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~------~~s~VtSlEvs~dG~ilTia~gssV~Fwda  212 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE------FNSPVTSLEVSQDGRILTIAYGSSVKFWDA  212 (334)
T ss_pred             hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe------cCCCCcceeeccCCCEEEEecCceeEEecc
Confidence            568999999999964  4799999999999999 8999998875      235799999999999998877667999995


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      ....    .  .++.+-.+.|.+.+.+|+-..+++|+.|..++-||..++.-+..                         
T Consensus       213 ksf~----~--lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-------------------------  261 (334)
T KOG0278|consen  213 KSFG----L--LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-------------------------  261 (334)
T ss_pred             cccc----c--eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-------------------------
Confidence            4322    1  34455567899999999999999999999999999866543311                         


Q ss_pred             eEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        160 GVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                         ....+-++|.++.|+|++. |++++.|++|+||.+.-++..
T Consensus       262 ---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  262 ---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ---cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence               0112336899999999884 778999999999998777653

>KOG0973|consensus

Probab=99.72  E-value=1.3e-16  Score=151.38  Aligned_cols=188  Identities=14%  Similarity=0.184  Sum_probs=138.5

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|+..|..+.|+|+  +|+++|.|++|.||| .+.++++.+.     +|...|..++|+|-|+|||+-++|+ +++|
T Consensus       124 ~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-----~H~s~VKGvs~DP~Gky~ASqsdDrtikvw  198 (942)
T KOG0973|consen  124 ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-----GHQSLVKGVSWDPIGKYFASQSDDRTLKVW  198 (942)
T ss_pred             EEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-----cccccccceEECCccCeeeeecCCceEEEE
Confidence            47899999999999984  899999999999999 7778887775     8999999999999999999999996 8999


Q ss_pred             EecCCCcceeec--Cce---ecCCCCcEeEEEEecCCCeEEEeec----CCcEEEEeeeeeeeE----------------
Q psy12788         78 AWSPSKSVWEEQ--PNK---TIPNLYTISALSWKRDGSRIACGGL----CGSVELFESVLKRTI----------------  132 (254)
Q Consensus        78 d~~~~~~~~~~~--~~~---~~~~~~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~~~~----------------  132 (254)
                      ...    .|...  ..+   +.+....+..++|||||++||+...    ...+.|.+..+.+..                
T Consensus       199 rt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFn  274 (942)
T KOG0973|consen  199 RTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFN  274 (942)
T ss_pred             Ecc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeC
Confidence            833    23210  011   1122346889999999999998864    234556543222210                


Q ss_pred             ---ee------------ceeEEEE--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEE
Q psy12788        133 ---WK------------GKFEMIY--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLG  194 (254)
Q Consensus       133 ---~~------------~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~  194 (254)
                         ++            ..|.+..  +.|..+.||......  +.+++.-.++..|..++++|++ .+++++-|+++.+.
T Consensus       275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             hHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence               00            1122333  346678889887664  4555556678899999999998 47788889999999


Q ss_pred             eccCCc
Q psy12788        195 DLHRNL  200 (254)
Q Consensus       195 dl~~~~  200 (254)
                      .++...
T Consensus       353 ~Fee~E  358 (942)
T KOG0973|consen  353 HFEEKE  358 (942)
T ss_pred             EcchHH
Confidence            988643

>KOG0316|consensus

Probab=99.71  E-value=1.1e-15  Score=124.18  Aligned_cols=183  Identities=15%  Similarity=0.215  Sum_probs=126.0

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      ..+|...|..++-+.  ..|++||-|+.+.+|| .+|+..+.|.     +|...|+.++|+.+...+++|++|. +|+||
T Consensus        55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-----cccceeeEEEecCcceEEEeccccceeEEEE
Confidence            357888888887754  4799999999999999 9999998886     8999999999999999999999995 99999


Q ss_pred             ecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------------ceeEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------GKFEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------~~~~~~~~~  143 (254)
                      -....  .++  ...+ +....|.++..  .+..|++|+.||++|.||++.++...+              +.+.+.-+-
T Consensus       130 CRS~s--~eP--iQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  130 CRSRS--FEP--IQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             cccCC--CCc--cchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec
Confidence            54322  221  1111 12346777776  466888899999999999887765422              122222333


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCcee--EEE--EecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEIT--DVA--IMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~--~i~--~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ++.+++-|-.+|+     +|.+.-|+.-.  ++.  +...+. .+.++.|+.+.+|||....+
T Consensus       204 ~stlrLlDk~tGk-----lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  204 DSTLRLLDKETGK-----LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             cceeeecccchhH-----HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence            4555666666652     23333333222  222  233343 45577899999999998764

>KOG0289|consensus

Probab=99.71  E-value=7.6e-16  Score=134.09  Aligned_cols=188  Identities=12%  Similarity=0.117  Sum_probs=137.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.||...|..+.++++  .+++++.|..|+||. ....+....    . .|+.+|+.+..+|.|+||++++.|+ +-..|
T Consensus       257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~----~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS----R-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc----c-cccccceeeeeccCCcEEEEecCCceEEEEE
Confidence            6799999999999984  689999999999998 444333222    2 7899999999999999999999997 55556


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----------------eeceeEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----------------WKGKFEMIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----------------~~~~~~~~~~  142 (254)
                      ++........   ......-.+++.+|+|||-++++|+.||.|+|||+..+.-.                ..|-|..+..
T Consensus       332 ~~~g~~lt~v---s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  332 ISSGSQLTVV---SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             ccCCcEEEEE---eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            5543332111   01112346999999999999999999999999998543211                1234566777


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCc
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNL  200 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~  200 (254)
                      .++.+++||++.-.+++.+.+.  ...++.++.|...+.|++.+ ++=.+++++-.+..
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             cCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            7888999999876544445442  23479999999888887654 44477777755544

>KOG0292|consensus

Probab=99.71  E-value=7.9e-17  Score=150.26  Aligned_cols=157  Identities=12%  Similarity=0.182  Sum_probs=128.9

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d   78 (254)
                      +..-+..|-.++|.|.  .|+++-..+.|++|| +-|.++..|+     +|+++|..++|||++.+|++|++| +|++|+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-----eHdGpVRgv~FH~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-----EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-----ccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence            3445678999999984  588888899999999 7888886665     899999999999999999999999 699999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      +..++...     ....|...|..+.|++.=.+|+++|.|.+|+||+-.+++++                          
T Consensus        80 Yk~rrclf-----tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i--------------------------  128 (1202)
T KOG0292|consen   80 YKTRRCLF-----TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI--------------------------  128 (1202)
T ss_pred             cccceehh-----hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE--------------------------
Confidence            87665543     34568889999999999999999999999999997555433                          


Q ss_pred             eeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccC
Q psy12788        159 RGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~  198 (254)
                         .+-+.|.+-|.+-+|+|.+ ..+.|+-|+|++|||+..
T Consensus       129 ---avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  129 ---AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             ---EEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence               2223445678899999954 556688899999999873

>KOG0306|consensus

Probab=99.71  E-value=4e-16  Score=143.40  Aligned_cols=187  Identities=14%  Similarity=0.138  Sum_probs=131.8

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-C---C--CCEEEEee--ecCCCCCCCCEEEEEECCCCCEEEEEeCC-
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-S---D--GRVHRIFD--YTAPHYKEREFTVACSSPSGQAVVVGSYD-   72 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~---~--g~~~~~~~--~~~~~~~~~~v~~~a~sPdg~~la~gs~d-   72 (254)
                      ..|.+.+..++-+|+  .+++||.|.+|++|| .   +  |...+.+.  +.....-++.|.|+++||||++||++-.| 
T Consensus       451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN  530 (888)
T ss_pred             hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence            479999999999885  699999999999998 2   1  32222111  11000235689999999999999999988 


Q ss_pred             cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------ece
Q psy12788         73 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGK  136 (254)
Q Consensus        73 ~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~  136 (254)
                      ++++|-+++-+--     .....|.-||.++..|||+++|++|+.|++|+||-+..|-+..                +..
T Consensus       531 TVkVyflDtlKFf-----lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~  605 (888)
T KOG0306|consen  531 TVKVYFLDTLKFF-----LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH  605 (888)
T ss_pred             eEEEEEecceeee-----eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence            5999987643211     2234677799999999999999999999999999775553321                111


Q ss_pred             eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCCcEEEEeccC
Q psy12788        137 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHR  198 (254)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~~i~i~dl~~  198 (254)
                      +-.+..-++.++-||-..=.  ....+.+ |-.+|.+++++|++.|++. +.|.+|++|....
T Consensus       606 ~FFt~gKD~kvKqWDg~kFe--~iq~L~~-H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGEKFE--EIQKLDG-HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEEEecCcceEEeechhhhh--hheeecc-chheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            12233346677778765432  2333333 3358999999999988775 5589999997543

>KOG0264|consensus

Probab=99.71  E-value=2.1e-16  Score=137.94  Aligned_cols=171  Identities=11%  Similarity=0.161  Sum_probs=120.8

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-E
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i   74 (254)
                      +.+|...|..++|.+   +.+++++.|+.+.||| +++  ++.    ...+ +|..+|+|++|+|- +..||+||.|+ +
T Consensus       223 ~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~----~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV  297 (422)
T KOG0264|consen  223 FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS----HSVK-AHSAEVNCVAFNPFNEFILATGSADKTV  297 (422)
T ss_pred             eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc----cccc-ccCCceeEEEeCCCCCceEEeccCCCcE
Confidence            568999999999987   5899999999999999 642  333    2334 79999999999994 56789999995 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeee-eeeeEeeceeEEEEecCCeEEEEeC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESV-LKRTIWKGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~  152 (254)
                      +|||++.-....    .....|...|..|.|||+ -+.||+++.|+.+.+||+. .+..+.               .-|.
T Consensus       298 ~LwDlRnL~~~l----h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---------------~eda  358 (422)
T KOG0264|consen  298 ALWDLRNLNKPL----HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---------------PEDA  358 (422)
T ss_pred             EEeechhcccCc----eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC---------------hhhh
Confidence            999975432211    223346679999999997 4678999999999999973 111110               0011


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcEEEEE--ECCCcEEEEeccC
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDRYLVA--RTPDTLLLGDLHR  198 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~--~~d~~i~i~dl~~  198 (254)
                      ..+- ...+.+...|...|..+.+.|.+.+.++  ..|+.+.||.+..
T Consensus       359 ~dgp-pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  359 EDGP-PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccCC-cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            1110 0222333334447899999998877664  4688999999764

>KOG0276|consensus

Probab=99.71  E-value=2.7e-15  Score=135.75  Aligned_cols=188  Identities=13%  Similarity=0.095  Sum_probs=143.0

Q ss_pred             CccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          1 GRVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      +++..|+..|-++.+.|.  .++++-..|.+.||| .+...++.|+     ..+.+|.++.|-+--+.+++|++|. ||+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheeeeccceEEEecCCceEEE
Confidence            467789999999999983  677888899999999 6666777776     3456899999999999999999995 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-----eeEeeceeE--E--------EE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-----RTIWKGKFE--M--------IY  141 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-----~~~~~~~~~--~--------~~  141 (254)
                      |++++..+.     .....|...|.+++-+|.-.++++++.|-.|++||-..+     .......|.  +        +|
T Consensus        82 fnynt~ekV-----~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF  156 (794)
T KOG0276|consen   82 FNYNTGEKV-----KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF  156 (794)
T ss_pred             Eecccceee-----EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce
Confidence            998765442     223457789999999999999999999999999995421     111122232  1        22


Q ss_pred             ---ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc---EEEEEECCCcEEEEeccCCce
Q psy12788        142 ---VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND---RYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       142 ---~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~---~~~v~~~d~~i~i~dl~~~~~  201 (254)
                         +-|++++||.+.+..  ....+. .|...|++|.+.+.+   .+++|+.|.+++|||..+..|
T Consensus       157 aS~sLDrTVKVWslgs~~--~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C  219 (794)
T KOG0276|consen  157 ASASLDRTVKVWSLGSPH--PNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC  219 (794)
T ss_pred             eeeeccccEEEEEcCCCC--Cceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence               236789999998875  556665 344579999998654   345566778999999987653

>KOG0294|consensus

Probab=99.70  E-value=1.7e-15  Score=127.43  Aligned_cols=184  Identities=13%  Similarity=0.194  Sum_probs=131.8

Q ss_pred             CccccCCCCCEEEEecCC----eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788          1 GRVVQHPVPPYALSWPAG----YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I   74 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~----~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i   74 (254)
                      |.|..|.+.+++|.|.++    .|++|+.|+.|.+|+ ..=.++.++.     +|.+.|+.++.||.|++-.+-+.|+ +
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~l  151 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVL  151 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----ccccccceeEecCCCceEEEEcCCcee
Confidence            457789999999999863    699999999999999 4456776654     7888999999999999866666674 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee----E----------eeceeEEE
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT----I----------WKGKFEMI  140 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~----~----------~~~~~~~~  140 (254)
                      |+|++...+....    ..+.+  .-+.|.|+|.|.+++.+..+ .|-+|.+.+-+.    .          ..+.+.++
T Consensus       152 r~WNLV~Gr~a~v----~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~v  224 (362)
T KOG0294|consen  152 RTWNLVRGRVAFV----LNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLV  224 (362)
T ss_pred             eeehhhcCcccee----eccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEE
Confidence            9999876555432    12222  23459999999999988865 466887532111    0          11223445


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC--cE-EEEEECCCcEEEEeccCC
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN--DR-YLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~--~~-~~v~~~d~~i~i~dl~~~  199 (254)
                      ..++..+.++|-.+.   ........|..+|..|.+..+  .. ++++++|+.|++||+++.
T Consensus       225 G~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  225 GGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecCCceEEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            556677888888765   233333345668999997643  34 456899999999999876

>KOG0300|consensus

Probab=99.70  E-value=8.3e-16  Score=129.60  Aligned_cols=183  Identities=17%  Similarity=0.275  Sum_probs=139.1

Q ss_pred             ccccCCCCCEEEEec--CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWP--AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~--~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +|.+|...|.++.|-  .++++++|.|++..+|| ++|+++..+.     +|+.+.+-++-+|..+++++.|.|. .|+|
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLW  341 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLW  341 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-----CcchhccccccCCcceEEEEeccCceeEec
Confidence            578999999999994  47899999999999999 9999985553     9999999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |+.......    ..+..|...|+++.|..|. .+++|+.|.+|++||++..|..                         
T Consensus       342 DFReaI~sV----~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp-------------------------  391 (481)
T KOG0300|consen  342 DFREAIQSV----AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP-------------------------  391 (481)
T ss_pred             cchhhccee----eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc-------------------------
Confidence            986433322    2345678899999999875 5789999999999998643321                         


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                        ...++  ...+++.|+++-...++ +-..++.++|+||...++-.++=...+|+.+.     ..|.+|..
T Consensus       392 --lATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM-----V~c~AW~e  454 (481)
T KOG0300|consen  392 --LATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM-----VTCCAWLE  454 (481)
T ss_pred             --ceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee-----eeeeeccc
Confidence              11222  24577888888544343 34556799999999888766654336677666     45666665

>KOG1274|consensus

Probab=99.70  E-value=4.1e-15  Score=139.35  Aligned_cols=194  Identities=18%  Similarity=0.185  Sum_probs=140.5

Q ss_pred             CCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          6 HPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         6 h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      |...|++++-..+.|++|+.|++|.+|. .+++.-..+.     ...-++..++|+-+|+++|.||.|. +++-+.....
T Consensus        55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s  129 (933)
T KOG1274|consen   55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS  129 (933)
T ss_pred             cCceeEEEeecccceEEeeccceEEEeeCCCCCccceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccc
Confidence            6778888888888999999999999998 5654322221     2335799999999999999999995 8887754433


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------------eceeEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------------KGKFEM  139 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------------~~~~~~  139 (254)
                      ..     ....+|..+|.+|.|+|.|++||+.+.||.|++||+..+....                        ++...+
T Consensus       130 ~~-----~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  130 QE-----KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             hh-----eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence            21     3345678899999999999999999999999999986543221                        000112


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCC-ceeEEEEecCcEEEEEEC-CCcEEEEeccCC-------ceeeEeCCCCC
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGY-EITDVAIMGNDRYLVART-PDTLLLGDLHRN-------LLSEVLWPDSG  210 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~-~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~-------~~~~~~~~~~~  210 (254)
                      ....++.|.+++.....  ....++..+-. .+..++|+|.++|+++++ ++.|.|||.++.       .+....|. ++
T Consensus       205 ~~~~d~~Vkvy~r~~we--~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~-p~  281 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGWE--LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWK-PN  281 (933)
T ss_pred             eeccCCeEEEEccCCce--eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecC-CC
Confidence            23345667777777665  55566654433 388999999999998776 889999999842       24555666 44


Q ss_pred             Cc
Q psy12788        211 RN  212 (254)
Q Consensus       211 g~  212 (254)
                      ++
T Consensus       282 ~n  283 (933)
T KOG1274|consen  282 AN  283 (933)
T ss_pred             CC
Confidence            33

>KOG1332|consensus

Probab=99.69  E-value=1e-15  Score=124.85  Aligned_cols=181  Identities=14%  Similarity=0.230  Sum_probs=122.2

Q ss_pred             EEecCCeEEEEeCCCcEEEEe-C-CC--CEEEEeeecCCCCCCCCEEEEEEC-C-CCCEEEEEeCCc-EEEEEecCCCcc
Q psy12788         13 LSWPAGYILAAGSDRIVTIYE-S-DG--RVHRIFDYTAPHYKEREFTVACSS-P-SGQAVVVGSYDN-IKLFAWSPSKSV   85 (254)
Q Consensus        13 l~w~~~~l~s~s~D~~i~vWd-~-~g--~~~~~~~~~~~~~~~~~v~~~a~s-P-dg~~la~gs~d~-i~l~d~~~~~~~   85 (254)
                      +.+...+|||||.|++|||+. + +|  +++.+|    . +|.++|..++|. | -|.+||++++|+ +.||.-  ..+.
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L----~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke--~~g~   91 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL----T-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE--ENGR   91 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEe----c-CCCCCeeEEeecccccCcEeeEeecCceEEEEec--CCCc
Confidence            345567899999999999998 4 44  344444    4 999999999995 5 599999999996 778873  3456


Q ss_pred             eeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeee-eeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLK-RTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                      |++. .....|...|++|+|-|.  |-.||+|+.||.|.|.+.... ....                         .+  
T Consensus        92 w~k~-~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-------------------------~k--  143 (299)
T KOG1332|consen   92 WTKA-YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-------------------------SK--  143 (299)
T ss_pred             hhhh-hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-------------------------hh--
Confidence            7541 122346679999999997  779999999999999876421 0000                         00  


Q ss_pred             EEecCCCceeEEEEecC---------------cEEEEEECCCcEEEEeccCCc-------------eeeEeCCCCCCcee
Q psy12788        163 LKSQYGYEITDVAIMGN---------------DRYLVARTPDTLLLGDLHRNL-------------LSEVLWPDSGRNEK  214 (254)
Q Consensus       163 l~s~~~~~i~~i~~~~~---------------~~~~v~~~d~~i~i~dl~~~~-------------~~~~~~~~~~g~~~  214 (254)
                      +...|...|+++.+.|.               -+|+.++.|+.++||+...+.             +.+++|.+..|-.+
T Consensus       144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~  223 (299)
T KOG1332|consen  144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK  223 (299)
T ss_pred             hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence            00011223444444331               358889999999999988742             45788885555555


Q ss_pred             EEe---eCceEEEEEeC
Q psy12788        215 FYF---DNVTVCLVFNA  228 (254)
Q Consensus       215 ~~~---~~~~~~~~~~~  228 (254)
                      ++.   ..+..+++|..
T Consensus       224 s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  224 STIASCSQDGTVIIWTK  240 (299)
T ss_pred             eeeEEecCCCcEEEEEe
Confidence            532   44556666665

>KOG1524|consensus

Probab=99.69  E-value=5.9e-16  Score=137.93  Aligned_cols=163  Identities=20%  Similarity=0.351  Sum_probs=121.5

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~   80 (254)
                      ...|++-|.+++|++  +.|+|||+|...+|||..|+.+    +... .|+++|++++|+|+ +.+|.||++..|+    
T Consensus       182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L----f~S~-~~ey~ITSva~npd-~~~~v~S~nt~R~----  251 (737)
T KOG1524|consen  182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL----FTSA-AEEYAITSVAFNPE-KDYLLWSYNTARF----  251 (737)
T ss_pred             EeccCcEEEEeecCccccceeecCCceeEEeecccCccc----ccCC-hhccceeeeeeccc-cceeeeeeeeeee----
Confidence            457999999999997  6899999999999999999888    6665 89999999999999 8899999987762    


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                                  +.++.+.|..++|||||..+++|+..|.+.+ .....+....+.|+.+..+...+.+.|+.++.   .
T Consensus       252 ------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~-A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v---~  315 (737)
T KOG1524|consen  252 ------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV-AYAIEQQLVSGNLKATSKSRKSITVRDVATGV---Q  315 (737)
T ss_pred             ------------cCCCccceEEEEEcCCCceeeccccCceEEE-eeeehhhhhhccceeEeeccceEEeehhhhhH---H
Confidence                        2346678999999999999999999999844 33333333445666666666677788887763   1


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEe
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGD  195 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~d  195 (254)
                      ..|  .+..+|.++++.. . +++..+...++|+.
T Consensus       316 d~L--E~p~rv~k~sL~Y-~-hLvvaTs~qvyiys  346 (737)
T KOG1524|consen  316 DIL--EFPQRVVKFSLGY-G-HLVVATSLQVYIYS  346 (737)
T ss_pred             HHh--hCccceeeeeece-e-EEEEEeccEEEEEe
Confidence            222  3345666666553 2 34444445566654

>KOG0641|consensus

Probab=99.69  E-value=2.4e-15  Score=121.64  Aligned_cols=164  Identities=13%  Similarity=0.188  Sum_probs=124.3

Q ss_pred             cccCCCCCEEE-EecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCC-CC-CCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYAL-SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAP-HY-KEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l-~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~-~~-~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +.+|++.+.+| .|+.-++++||+|.+||+|| +-..++.+++.... .+ ....|.+++..|.|++||+|-.|. ..+|
T Consensus       179 ~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  179 LSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             ecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            56899988887 78888999999999999999 66677877753221 01 125789999999999999999995 8899


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |+.-.+..     ....+|...|.++.|||...|+.+++.|..|++-|+.-                      |++..  
T Consensus       259 dirg~r~i-----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg----------------------dla~e--  309 (350)
T KOG0641|consen  259 DIRGGRMI-----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG----------------------DLAHE--  309 (350)
T ss_pred             EeeCCcee-----eeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc----------------------chhhc--
Confidence            97643322     23457788999999999999999999999999988631                      12222  


Q ss_pred             eeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEec
Q psy12788        158 GRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDL  196 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl  196 (254)
                       -.+++-..+...+..+.+.|++ .|+..+.|+++.+|-+
T Consensus       310 -l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  310 -LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             -CceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence             1233334455566677888877 6788888999999975

>KOG0302|consensus

Probab=99.69  E-value=1.8e-16  Score=135.89  Aligned_cols=122  Identities=16%  Similarity=0.262  Sum_probs=96.2

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +.+|+..|-.|.|+|   ..|+|||+|++|+||| +.+.....+ .. + .|...|+.++|+..-.+||+|+.|+ ++||
T Consensus       253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~-k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iw  329 (440)
T KOG0302|consen  253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-ST-K-AHNSDVNVISWNRREPLLASGGDDGTLSIW  329 (440)
T ss_pred             ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-Ee-e-ccCCceeeEEccCCcceeeecCCCceEEEE
Confidence            678999999999998   4799999999999999 777322222 12 3 6888999999999888999999997 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~  129 (254)
                      |+...+.. +.. .....|..+|++|.|+|. ...||+++.|..|.|||+...
T Consensus       330 DLR~~~~~-~pV-A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  330 DLRQFKSG-QPV-ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             EhhhccCC-Ccc-eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            98654432 110 123346789999999995 567899999999999998643

>KOG0308|consensus

Probab=99.69  E-value=1.3e-16  Score=144.57  Aligned_cols=166  Identities=16%  Similarity=0.189  Sum_probs=124.7

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEE-CCCCCEEEEEeCCc-EE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACS-SPSGQAVVVGSYDN-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~-sPdg~~la~gs~d~-i~   75 (254)
                      +..|..-|..++-..  +.|+|||.|-+|++|+ ..+  -|+.++.     .|.+.|.|++. .++..++|+|+.|+ |.
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-----~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-----THKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-----cccchheeeeecccCceeEEecCCCccEE
Confidence            445666666666543  4799999999999999 444  4565554     68899999999 89999999999996 99


Q ss_pred             EEEecCCCcce----eecCceec--CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEE
Q psy12788         76 LFAWSPSKSVW----EEQPNKTI--PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV  149 (254)
Q Consensus        76 l~d~~~~~~~~----~~~~~~~~--~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v  149 (254)
                      |||++......    +.......  .+..+|++++-+|.|..|++|+..+.+++||.++++.+                 
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-----------------  206 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-----------------  206 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-----------------
Confidence            99998543211    10001111  34568999999999999999999999999998766533                 


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                                 +.|+ .|...|..+-++.++ +.+.+++|++|++|||.-+++.
T Consensus       207 -----------mkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  207 -----------MKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             -----------eeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence                       3333 234567888888777 6888999999999999988764

>KOG0310|consensus

Probab=99.69  E-value=1.6e-15  Score=133.60  Aligned_cols=157  Identities=12%  Similarity=0.182  Sum_probs=119.7

Q ss_pred             cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEE
Q psy12788          3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~   77 (254)
                      +.+|+.-|.+.+|+|.   +++|||.|++||+|| +. +..+..+      .|..+|-.+.|-|.|.++|+++-+.+|+|
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pVe~vl~lpsgs~iasAgGn~vkVW  222 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPVESVLALPSGSLIASAGGNSVKVW  222 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCceeeEEEcCCCCEEEEcCCCeEEEE
Confidence            5689999999999872   799999999999999 43 3555444      36779999999999999999998899999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |+....+..    .....|...|||+.+..|++.|.+|+.|+.|++||+-..+..+.                       
T Consensus       223 Dl~~G~qll----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s-----------------------  275 (487)
T KOG0310|consen  223 DLTTGGQLL----TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS-----------------------  275 (487)
T ss_pred             EecCCceeh----hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe-----------------------
Confidence            986544322    12223677999999999999999999999999999633332211                       


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCC
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRN  199 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~  199 (254)
                             =.+.++|.+++++|+++-++ |-+++.+.+=+....
T Consensus       276 -------~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  276 -------WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             -------eecccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence                   12346899999999877555 556666666544433

>KOG0302|consensus

Probab=99.69  E-value=6.6e-16  Score=132.50  Aligned_cols=165  Identities=16%  Similarity=0.203  Sum_probs=125.4

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l   76 (254)
                      +.+|...=++|+|+|   ..|+||-+-+.|++|. .+|.=... ..... +|...|-.+.|||.- ..||++|.|+ |||
T Consensus       207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrI  284 (440)
T KOG0302|consen  207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-QRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRI  284 (440)
T ss_pred             ecccCccceeeecccccccccccCccccceEeeeeccCceeec-Ccccc-ccccchhhhccCCccCceEEeeecCceEEE
Confidence            457888889999999   3589998888999999 56642110 01223 788999999999974 5789999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      ||.+...+.-   ......|..-|+-|+|+.+-.+||+|+-||+++|||++.-                       ..+ 
T Consensus       285 WDiRs~~~~~---~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~-----------------------~~~-  337 (440)
T KOG0302|consen  285 WDIRSGPKKA---AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF-----------------------KSG-  337 (440)
T ss_pred             EEecCCCccc---eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc-----------------------cCC-
Confidence            9987543221   1233556778999999999999999999999999998521                       112 


Q ss_pred             ceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                        +.+.....|..+|++|.++|.+  .+++++.|+.+.||||..
T Consensus       338 --~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  338 --QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             --CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence              2344445667899999999865  577788899999999874

>KOG0306|consensus

Probab=99.68  E-value=1.2e-14  Score=133.85  Aligned_cols=220  Identities=15%  Similarity=0.156  Sum_probs=145.5

Q ss_pred             cccCCCCCEEEEecCCeEEEE-eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPYALSWPAGYILAA-GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~-s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+|...|.+++++.+.++.+ +..+.++||+ .+++|++++.      . ..+-+..|-|.++++++|...+ +.+||+
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~------~-~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT------C-GYILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec------c-ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence            468999999999998643332 3456899999 6699999885      1 2688999999999999999886 899997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee--------eeE---------e-eceeEEEE
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK--------RTI---------W-KGKFEMIY  141 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~--------~~~---------~-~~~~~~~~  141 (254)
                      ..... .+    ....|.+.|.+++.+||++.+++|+.|++|++||...-        +.+         . +....+.+
T Consensus       442 aS~~l-~E----ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~  516 (888)
T KOG0306|consen  442 ASASL-VE----TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV  516 (888)
T ss_pred             ehhhh-hh----hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence            64332 11    11257889999999999999999999999999996421        100         0 01112234


Q ss_pred             ecC----------CeEEEEeCCCCCceeeEEEEecCCC--ceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEeCCC
Q psy12788        142 VSP----------SQVLVKPLSGESKGRGVILKSQYGY--EITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVLWPD  208 (254)
Q Consensus       142 ~~~----------~~~~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~~~~  208 (254)
                      +++          +++.|+-+.+=    ++.+ +.+|+  +|.++.++|+..++ +++.|+.++||-+.-|-|-.=-+. 
T Consensus       517 Spdgk~LaVsLLdnTVkVyflDtl----KFfl-sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-  590 (888)
T KOG0306|consen  517 SPDGKLLAVSLLDNTVKVYFLDTL----KFFL-SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-  590 (888)
T ss_pred             cCCCcEEEEEeccCeEEEEEecce----eeee-eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc-
Confidence            444          44555555442    1222 45666  89999999988765 567799999999887765211111 


Q ss_pred             CCCceeEEeeCceEEEEEeCCeeEEEEeecCe
Q psy12788        209 SGRNEKFYFDNVTVCLVFNAGELSIIEYGNNE  240 (254)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  240 (254)
                      ++-.-+...--|..-++|.+|....++|=+.+
T Consensus       591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             ccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            11111111111244566666666666665544

>KOG1446|consensus

Probab=99.68  E-value=1.3e-13  Score=116.05  Aligned_cols=187  Identities=14%  Similarity=0.169  Sum_probs=133.2

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC--C-cEEEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--D-NIKLFA   78 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~--d-~i~l~d   78 (254)
                      .-...|.++.|+.  +.+++++.|.++++|| .+|.+++++.     -+...+..+.|-.....+.-++.  | .||.-+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-----skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-----SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-----cccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3467899999987  4788899999999999 8999988874     23457888888655555555553  4 588777


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------------ceeEEEEecC
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------GKFEMIYVSP  144 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------~~~~~~~~~~  144 (254)
                      +...+-.     .....|...|++|+-||-+..+++++.|++|++||+++.+++.-              |.+.......
T Consensus        87 l~dNkyl-----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   87 LHDNKYL-----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eecCceE-----EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence            6543322     23456788999999999999999999999999999986655421              1122223333


Q ss_pred             CeEEEEeCCCCCc--eeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCce
Q psy12788        145 SQVLVKPLSGESK--GRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLL  201 (254)
Q Consensus       145 ~~~~v~~~~~~~~--~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~  201 (254)
                      ..++++|+++=++  +..+.+.-....+.+.+.|+++++++.-++ .+-+++-|.-+|.+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            4888999875332  233333222245789999999998766555 55777889988864

>KOG2096|consensus

Probab=99.67  E-value=3.4e-15  Score=125.93  Aligned_cols=182  Identities=13%  Similarity=0.187  Sum_probs=120.8

Q ss_pred             CCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788          6 HPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         6 h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~   82 (254)
                      |..++..+-...  .+|+|++.|.+|.+|+..|+.+++++.     .+..-+.++.||+|+++|++++- .+++|...-.
T Consensus       186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt-----nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~  260 (420)
T KOG2096|consen  186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT-----NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT  260 (420)
T ss_pred             cccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc-----ccccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence            455555544433  479999999999999977999988762     33456788999999999999988 4899986422


Q ss_pred             -Ccceeec-Cce-ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee-------Eeec----------eeEEEE-
Q psy12788         83 -KSVWEEQ-PNK-TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT-------IWKG----------KFEMIY-  141 (254)
Q Consensus        83 -~~~~~~~-~~~-~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~-------~~~~----------~~~~~~-  141 (254)
                       .+..++. +.. ...|...|++.+|||+.+++++.+.||+.+|||+..+-.       +..+          +.-+.. 
T Consensus       261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ls  340 (420)
T KOG2096|consen  261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELS  340 (420)
T ss_pred             cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeC
Confidence             2222221 122 234677999999999999999999999999999743211       1011          011111 


Q ss_pred             --------ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEE
Q psy12788        142 --------VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLG  194 (254)
Q Consensus       142 --------~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~  194 (254)
                              +..+.+.++....++  ..-.+..-++..|.+|+++++++|++.+.|+.+++.
T Consensus       341 P~g~~lA~s~gs~l~~~~se~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~  399 (420)
T KOG2096|consen  341 PSGDSLAVSFGSDLKVFASEDGK--DYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVI  399 (420)
T ss_pred             CCCcEEEeecCCceEEEEcccCc--cchhHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence                    222344444444443  111222234567888888888888888888877765

>KOG0299|consensus

Probab=99.66  E-value=2.1e-14  Score=125.92  Aligned_cols=189  Identities=13%  Similarity=0.192  Sum_probs=141.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEE----EE----------eeecCCCCCCCCEEEEEECCCCCE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVH----RI----------FDYTAPHYKEREFTVACSSPSGQA   65 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~----~~----------~~~~~~~~~~~~v~~~a~sPdg~~   65 (254)
                      +..|.-+|.+|+.+++  +.++++.|++|.=|+ .+|...    ..          +....+ +|...+.++|.||||+|
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~-~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK-GHVKEILTLAVSSDGKY  216 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccc-cccceeEEEEEcCCCcE
Confidence            4578899999999985  899999999999999 666532    11          001112 57778999999999999


Q ss_pred             EEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee---eEee-------
Q psy12788         66 VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR---TIWK-------  134 (254)
Q Consensus        66 la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~---~~~~-------  134 (254)
                      ||+|+.|. +.||+.++....     .....|...|.+++|-..-..|.+++.|.+|++|++.-..   ..+.       
T Consensus       217 latgg~d~~v~Iw~~~t~ehv-----~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHV-----KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG  291 (479)
T ss_pred             EEecCCCceEEEecCcccchh-----hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence            99999996 789996543321     1124567899999999988999999999999999964221   1111       


Q ss_pred             ------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        135 ------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       135 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                            .+....+-.|.++++|.+...   .+++.++ .+..+.+++|-.++.|++++.++.|.+|++...+.
T Consensus       292 IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifrg-~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  292 IDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFRG-GEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             echhcccceEEeccccceeEEEecccc---ceeeeeC-CCCCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence                  111222335789999999665   4444444 45679999999888999999999999999998774

>KOG1036|consensus

Probab=99.64  E-value=7.1e-14  Score=117.31  Aligned_cols=212  Identities=16%  Similarity=0.189  Sum_probs=138.1

Q ss_pred             cccCCCCCEEEEecC-CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          3 VVQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      ...|..++.+++|.+ ..+++|+.|+.|+.+|.++.....+    . .|..+|.|+.++|--..+++||+|+ +++||..
T Consensus        50 ~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i----g-th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   50 KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI----G-THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             heecCCceeeeeccCCceEEEeccCceEEEEEecCCcceee----c-cCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            457999999999976 5799999999999999443333222    2 5888999999999888899999995 9999954


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----eceeEE---EEe----------
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----KGKFEM---IYV----------  142 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----~~~~~~---~~~----------  142 (254)
                      ....      .........|.++..  .|+.|++|+.+..|.+||++.-....     .-+|..   .+.          
T Consensus       125 ~~~~------~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  125 NKVV------VGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             cccc------ccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence            3111      111223347887766  67899999999999999986432111     111211   111          


Q ss_pred             cCCeEEEEeCCCC-Cc-eeeEEEEec--------CCCceeEEEEecC-cEEEEEECCCcEEEEeccCCcee-eEeCCCCC
Q psy12788        143 SPSQVLVKPLSGE-SK-GRGVILKSQ--------YGYEITDVAIMGN-DRYLVARTPDTLLLGDLHRNLLS-EVLWPDSG  210 (254)
Q Consensus       143 ~~~~~~v~~~~~~-~~-~~~~~l~s~--------~~~~i~~i~~~~~-~~~~v~~~d~~i~i~dl~~~~~~-~~~~~~~~  210 (254)
                      -++.+-+-.+... .+ -.+...+.+        ...+|++|+|+|- +.|++|++|+-+.+||+..+|-. ++.     
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-----  271 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-----  271 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-----
Confidence            1334433333222 00 022222211        1247999999985 45888999999999999887632 221     


Q ss_pred             CceeEEeeCceEEEEEeC-CeeEEEEee
Q psy12788        211 RNEKFYFDNVTVCLVFNA-GELSIIEYG  237 (254)
Q Consensus       211 g~~~~~~~~~~~~~~~~~-g~~~~~~~~  237 (254)
                           .++..+..+.|+. |+++-+...
T Consensus       272 -----~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  272 -----KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             -----CCCCceEEEEeccCCCeEEEEec
Confidence                 1234577788887 665555544

>KOG0270|consensus

Probab=99.63  E-value=1.5e-14  Score=126.39  Aligned_cols=156  Identities=17%  Similarity=0.259  Sum_probs=118.0

Q ss_pred             ccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l~   77 (254)
                      .+|+..|.+|+|+.   +.|||||.|.||++|| .+|++.+++.     -|.+.|.+++|+|. .++|++||+|+ +++.
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-----hcCCceeEEEecCCCceEEEeccccceEEee
Confidence            37999999999986   4799999999999999 8999998775     46789999999996 67899999996 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeee-eeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLK-RTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      |.+.....     .+...-.+.|-.++|.|... .+.+++.||+|+-+|++.. ++.+                      
T Consensus       315 D~R~~~~s-----~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw----------------------  367 (463)
T KOG0270|consen  315 DCRDPSNS-----GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW----------------------  367 (463)
T ss_pred             eccCcccc-----CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee----------------------
Confidence            96521110     22233456799999999765 4667778999999998532 2211                      


Q ss_pred             CceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                            .+. .|..+|..|.+++.-  -+.++++++++++|++..
T Consensus       368 ------t~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  368 ------TLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             ------EEE-eccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence                  111 345688889888643  356688999999998774

>KOG0305|consensus

Probab=99.63  E-value=5.3e-14  Score=127.26  Aligned_cols=175  Identities=14%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             EEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeec
Q psy12788         12 ALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ   89 (254)
Q Consensus        12 ~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~   89 (254)
                      -++|+....++.+....|++|+ .+|......+     -+...|+++.|+|+|++||+|..++ +.|||....+..-   
T Consensus       182 lldWss~n~laValg~~vylW~~~s~~v~~l~~-----~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~---  253 (484)
T KOG0305|consen  182 LLDWSSANVLAVALGQSVYLWSASSGSVTELCS-----FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR---  253 (484)
T ss_pred             HhhcccCCeEEEEecceEEEEecCCCceEEeEe-----cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc---
Confidence            3678875455556677899999 6777554333     2357899999999999999999996 8999965433321   


Q ss_pred             CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------------ceeEEEEecCCeEEEEeC
Q psy12788         90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------------GKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        90 ~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~  152 (254)
                       .....|...|.+++|+  +..+.+|+.|+.|..+|++..+....                 +.+....-.|+.+.|||.
T Consensus       254 -~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  254 -TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             -cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence             2222267799999998  78899999999999999875432211                 112222334668899998


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecC--cEEEEE--ECCCcEEEEeccCCc
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGN--DRYLVA--RTPDTLLLGDLHRNL  200 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~--~~~~v~--~~d~~i~i~dl~~~~  200 (254)
                      ....  ....+ ..+...|..++|+|-  +-+++|  +.|++|++||..+++
T Consensus       331 ~~~~--p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  331 LSPE--PKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             CCcc--ccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence            5542  22333 345678999999973  345554  458999999999775

>KOG0641|consensus

Probab=99.63  E-value=2.8e-13  Score=109.74  Aligned_cols=184  Identities=13%  Similarity=0.189  Sum_probs=120.9

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe---CCCCEE-EEeeecCCCCCCCCEEEEEECC----CCCEEEEEeCC
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE---SDGRVH-RIFDYTAPHYKEREFTVACSSP----SGQAVVVGSYD   72 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd---~~g~~~-~~~~~~~~~~~~~~v~~~a~sP----dg~~la~gs~d   72 (254)
                      -..|.+.+++.+|+|  .+|++||.|++|++.-   .+.+.. ..+++  . -|++.|..++|-.    .|.+|++++..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~--n-mhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF--N-MHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee--e-ecCCceeeeEEecCCCcCceEEEecCCC
Confidence            356889999999998  5899999999999973   121111 11111  1 4778999999953    35678888766


Q ss_pred             cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------ec----------
Q psy12788         73 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------KG----------  135 (254)
Q Consensus        73 ~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------~~----------  135 (254)
                      ..+||.-+.+++..-   .....|.+-|.++ ++=+|.++|+|+.|++|+.||++...+..       ++          
T Consensus       162 dc~iy~tdc~~g~~~---~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGF---HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             cceEEEeecCCCCcc---eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence            555555333333211   1123455566654 34479999999999999999987543321       11          


Q ss_pred             ------eeEEEEecCCeEEEEeCCCCCceeeEEEEec--CCCceeEEEEecCcEE-EEEECCCcEEEEeccC
Q psy12788        136 ------KFEMIYVSPSQVLVKPLSGESKGRGVILKSQ--YGYEITDVAIMGNDRY-LVARTPDTLLLGDLHR  198 (254)
Q Consensus       136 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~  198 (254)
                            +...+-..++.+.++|+..+.     +++..  +..+|.++.|+|...| ++++.|..|++-||..
T Consensus       238 ~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  238 AVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             EECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                  111122234567788888762     33333  3458999999997765 5677899999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.62  E-value=1.5e-12  Score=111.45  Aligned_cols=218  Identities=10%  Similarity=0.126  Sum_probs=131.4

Q ss_pred             CCCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-eCCc-EEEEEecC
Q psy12788          8 VPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-SYDN-IKLFAWSP   81 (254)
Q Consensus         8 ~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s~d~-i~l~d~~~   81 (254)
                      ..+..++|+++  .+ ++++.|+.|++|| .+++....+.     .+ ..+..++|+|+|+.++++ +.++ +++||...
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-----SG-PDPELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            34678999875  44 6777899999999 6777765543     22 235678999999987655 4454 89999754


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCc-EEEEeeeeeeeEe---------------eceeEE-EEecC
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS-VELFESVLKRTIW---------------KGKFEM-IYVSP  144 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~-v~iwd~~~~~~~~---------------~~~~~~-~~~~~  144 (254)
                      ...      ...++....+.+++|+|||+++++++.++. +.+||..+++...               ++.+.+ ....+
T Consensus       105 ~~~------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  178 (300)
T TIGR03866       105 RKV------LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG  178 (300)
T ss_pred             CeE------EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC
Confidence            221      112222345688999999999999988764 5667875443321               112221 11235


Q ss_pred             CeEEEEeCCCCCceeeEEEEecC------CCceeEEEEecCcEE-EE-EECCCcEEEEeccCCceeeE----------eC
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQY------GYEITDVAIMGNDRY-LV-ARTPDTLLLGDLHRNLLSEV----------LW  206 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~------~~~i~~i~~~~~~~~-~v-~~~d~~i~i~dl~~~~~~~~----------~~  206 (254)
                      +.+.+||+.++.  ....+....      ......+.|++++++ ++ ...++++.+||+.++++...          .|
T Consensus       179 ~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  256 (300)
T TIGR03866       179 GTVSVIDVATRK--VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF  256 (300)
T ss_pred             CEEEEEEcCcce--eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence            678899998773  111111110      112346888988865 33 44567899999998876432          23


Q ss_pred             CCCCCceeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeec
Q psy12788        207 PDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRI  247 (254)
Q Consensus       207 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  247 (254)
                      + |+|+..+..       .-..|++.+++....+++.++++
T Consensus       257 ~-~~g~~l~~~-------~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       257 T-PDEKYLLTT-------NGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             C-CCCCEEEEE-------cCCCCeEEEEECCCCcEEEEEEc
Confidence            3 333322211       01135566666666666666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269|consensus

Probab=99.61  E-value=6e-15  Score=136.09  Aligned_cols=199  Identities=14%  Similarity=0.212  Sum_probs=138.4

Q ss_pred             CEEEEecC---CeEEEEeCCCcEEEEeCC--CC--EEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEEEEec
Q psy12788         10 PYALSWPA---GYILAAGSDRIVTIYESD--GR--VHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus        10 v~~l~w~~---~~l~s~s~D~~i~vWd~~--g~--~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l~d~~   80 (254)
                      ...|.|+.   ++||+++..+.|.+||.+  ++  ++..|    . .|+..++++.||+. ..+|++||.|+ +++||+.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f----~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF----N-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh----h-hhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            45788875   589999999999999932  22  33223    3 79999999999986 46788999997 9999986


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      .....     .....+...|.+|.|+| .+.++|++...|.+++||++-.+     ++                      
T Consensus       165 ~~~S~-----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-----r~----------------------  212 (839)
T KOG0269|consen  165 SKKSK-----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-----RC----------------------  212 (839)
T ss_pred             ccccc-----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----hH----------------------
Confidence            54432     12233566899999999 58899999999999999985211     00                      


Q ss_pred             eEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc------------eeeEeCCCCCCceeEEeeCceEEEEE
Q psy12788        160 GVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL------------LSEVLWPDSGRNEKFYFDNVTVCLVF  226 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~  226 (254)
                       ......|.+.|.++.++|+..|+ +|+.|++++|||+.+++            +..|+|. |.-.  +.+   ..|...
T Consensus       213 -~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR-P~~~--~hL---Atcsmv  285 (839)
T KOG0269|consen  213 -EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR-PARS--YHL---ATCSMV  285 (839)
T ss_pred             -HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec-cCcc--chh---hhhhcc
Confidence             01111345689999999977665 57889999999998654            3477887 4322  222   233333


Q ss_pred             eCCeeEEEEeecCeeeeeeecCCcCC
Q psy12788        227 NAGELSIIEYGNNEILTCVRIPTDSS  252 (254)
Q Consensus       227 ~~g~~~~~~~~~~~~~~~~~~~~~~~  252 (254)
                      .+-.+.+++...+-|.-..--||+++
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~  311 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDS  311 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCcc
Confidence            44456667777666666666666553

>KOG0321|consensus

Probab=99.61  E-value=6.6e-14  Score=127.03  Aligned_cols=220  Identities=14%  Similarity=0.172  Sum_probs=139.9

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l   76 (254)
                      +...|...|..+.|-|  ..|++++-|.+|++|| ..+++...-.  .. +|...|.+++|.|+.+ .|++|+.|+ +.|
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~--~~-GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL--NL-GHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee--ec-ccccccchhhhccCCCcceeeccCCCcEEE
Confidence            3467999999999987  4799999999999999 5555553310  12 8999999999999765 588999996 899


Q ss_pred             EEecCCCc-ceee---------cC------------ceecCCCCcEeE---EEEecCCCeEEEeec-CCcEEEEeeeeee
Q psy12788         77 FAWSPSKS-VWEE---------QP------------NKTIPNLYTISA---LSWKRDGSRIACGGL-CGSVELFESVLKR  130 (254)
Q Consensus        77 ~d~~~~~~-~~~~---------~~------------~~~~~~~~~i~~---l~~spdG~~la~g~~-dg~v~iwd~~~~~  130 (254)
                      ||...... ..++         .+            .+.+.+...|.+   +-+..|...||+++. |+.|++||++...
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99854331 0000         00            000112234555   667789999999988 9999999986432


Q ss_pred             eEe---------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE----EecC
Q psy12788        131 TIW---------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA----IMGN  179 (254)
Q Consensus       131 ~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~----~~~~  179 (254)
                      ..+                           .|.++.....|+.+..|++.+-.   .-.+....|..+..+-    .+|+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s---~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS---ISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC---cCchhhccCcccceeeeeeecCCC
Confidence            221                           12334444557888899887652   1112222333333322    3678


Q ss_pred             cEEEE-EECCCcEEEEeccCCc------------eeeEeCCCCCCceeEEeeCceEEEEEe
Q psy12788        180 DRYLV-ARTPDTLLLGDLHRNL------------LSEVLWPDSGRNEKFYFDNVTVCLVFN  227 (254)
Q Consensus       180 ~~~~v-~~~d~~i~i~dl~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~~  227 (254)
                      +.+++ ++.|...+||-+.+-.            +..|.|-...-.......++....+|.
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            87765 6678999999888543            456666532222233334444555554

>KOG4283|consensus

Probab=99.60  E-value=5.7e-14  Score=117.54  Aligned_cols=198  Identities=15%  Similarity=0.150  Sum_probs=134.6

Q ss_pred             ccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCC-------EEEEee----ecCCCCCCCCEEEEEECC-CCCEEE
Q psy12788          4 VQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGR-------VHRIFD----YTAPHYKEREFTVACSSP-SGQAVV   67 (254)
Q Consensus         4 ~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~-------~~~~~~----~~~~~~~~~~v~~~a~sP-dg~~la   67 (254)
                      .-|.+.|.+|..++   +++++|+.|+.|.+|| ++-.       ..+...    .... +|...|.++-|-| |--+|.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~-~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN-GHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc-cceeeeeeeEEeeecCceee
Confidence            35889999999986   5899999999999998 4321       111111    1123 6788999999998 556899


Q ss_pred             EEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCC---eEEEeecCCcEEEEeeeeeeeEeeceeEEEEec
Q psy12788         68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS---RIACGGLCGSVELFESVLKRTIWKGKFEMIYVS  143 (254)
Q Consensus        68 ~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~---~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~  143 (254)
                      ++|+|. +++||.++.+.      ...+.-++.|++-+|||=..   +||+|..+-.|++-|+.+|.+-           
T Consensus       119 ssSFDhtlKVWDtnTlQ~------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----------  181 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----------  181 (397)
T ss_pred             cccccceEEEeeccccee------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----------
Confidence            999995 99999554322      22344456789999999654   7888888888888876433211           


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE--EEECCCcEEEEeccCC----------------------
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL--VARTPDTLLLGDLHRN----------------------  199 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~--v~~~d~~i~i~dl~~~----------------------  199 (254)
                                       -.| +.+.+.|..|.++|...|+  +++.|+++++||++..                      
T Consensus       182 -----------------H~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~  243 (397)
T KOG4283|consen  182 -----------------HTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT  243 (397)
T ss_pred             -----------------eee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence                             111 2345689999999977654  5678999999999843                      


Q ss_pred             ----ceeeEeCCCCCCceeEEeeCceEEEEEeC--CeeEEEEeec
Q psy12788        200 ----LLSEVLWPDSGRNEKFYFDNVTVCLVFNA--GELSIIEYGN  238 (254)
Q Consensus       200 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--g~~~~~~~~~  238 (254)
                          |+..+.|. ++|.......-+.-..+|+.  |+..+.+|++
T Consensus       244 ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~  287 (397)
T KOG4283|consen  244 AHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGRNTLREFGP  287 (397)
T ss_pred             cccceeeeeeec-ccchhhhhccCccceEEeecccCccccccccc
Confidence                22333444 33333333333445567777  7788888874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.60  E-value=5.2e-13  Score=114.27  Aligned_cols=177  Identities=16%  Similarity=0.176  Sum_probs=116.3

Q ss_pred             CCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc--EEEEEecCC
Q psy12788          9 PPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--i~l~d~~~~   82 (254)
                      .+..++|+|+  .+ ++++.|+.+++|| .+++++..+.      +...+.+++|+|+|+++++++.+.  +.+||....
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            3567889874  45 4556789999999 5666665543      223467899999999999988763  556674322


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee-----------------------ceeE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK-----------------------GKFE  138 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~-----------------------~~~~  138 (254)
                      ..      .........+..++|+|||++|++++ .++.|.+||..+++....                       +.+.
T Consensus       148 ~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~  221 (300)
T TIGR03866       148 EI------VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA  221 (300)
T ss_pred             eE------EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence            11      11111223467899999999886554 699999999876543211                       1111


Q ss_pred             E-EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE--ECCCcEEEEeccCCce
Q psy12788        139 M-IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA--RTPDTLLLGDLHRNLL  201 (254)
Q Consensus       139 ~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~--~~d~~i~i~dl~~~~~  201 (254)
                      . ...+.+.+.+||+.++.   .... ...+..+..++|+|+++++++  ..+++|+|||+.++++
T Consensus       222 ~~~~~~~~~i~v~d~~~~~---~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       222 FVALGPANRVAVVDAKTYE---VLDY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEcCCCCeEEEEECCCCc---EEEE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            1 11234467888887763   2211 123567899999998876554  3478999999999885

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0288|consensus

Probab=99.59  E-value=1.1e-14  Score=126.18  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=138.7

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYESDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      +-.|...|..+.|-+  +.|++||.|+.|++|+..|+   .+.++    . +..+.|+++.|.++++++.+++.|+ +++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL----a-Gs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL----A-GSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh----h-ccCCCcceeeecCCCceEEeecCCCceee
Confidence            456889999999976  57999999999999995543   33333    3 5667899999999999998888885 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----ce-e------EEEEec--
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----GK-F------EMIYVS--  143 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----~~-~------~~~~~~--  143 (254)
                      |+.+..+..     .....|...|+++.|...-..+++|+.|.++++||+...++...    .. .      ...+++  
T Consensus       246 Wnvd~~r~~-----~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~  320 (459)
T KOG0288|consen  246 WNVDSLRLR-----HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHF  320 (459)
T ss_pred             eeccchhhh-----hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccc
Confidence            997643321     22234788999999999988899999999999999854333211    00 1      112233  


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +.+++.||..++.    ....-..++.|+++.++.++ .+++++.|+++.+.|+++..+.
T Consensus       321 DkkvRfwD~Rs~~----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~  376 (459)
T KOG0288|consen  321 DKKVRFWDIRSAD----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR  376 (459)
T ss_pred             ccceEEEeccCCc----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence            4689999988874    22222446799999999877 5677888999999999987653

>KOG0643|consensus

Probab=99.59  E-value=2.4e-13  Score=112.39  Aligned_cols=173  Identities=13%  Similarity=0.170  Sum_probs=125.0

Q ss_pred             CccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----
Q psy12788          1 GRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----   72 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----   72 (254)
                      |...+|+..|++++.+.  ..+++||.|.++++|| ++|+++.+++      ...+|..+.|+++|++++....+     
T Consensus        46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK------TNSPVKRVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee------cCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence            34679999999997654  6899999999999999 9999997774      34689999999999988776533     


Q ss_pred             c-EEEEEecCCCcc-eeecCceec-CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------
Q psy12788         73 N-IKLFAWSPSKSV-WEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~-~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------  133 (254)
                      . +.++|+...... -.+.+...+ .+...++.+-|+|-|+.|++|..||.|.+||+++++...                
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s  199 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS  199 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence            1 567776522211 111111222 245689999999999999999999999999998764322                


Q ss_pred             -eceeEEEEecCCeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEecCcEEEE
Q psy12788        134 -KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS-QYGYEITDVAIMGNDRYLV  184 (254)
Q Consensus       134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~~~~~~v  184 (254)
                       +..|-++.+.|.+.+++|+.+=.     +++. ...-+|++.+++|--.+++
T Consensus       200 ~d~T~FiT~s~Dttakl~D~~tl~-----v~Kty~te~PvN~aaisP~~d~Vi  247 (327)
T KOG0643|consen  200 RDRTYFITGSKDTTAKLVDVRTLE-----VLKTYTTERPVNTAAISPLLDHVI  247 (327)
T ss_pred             CCcceEEecccCccceeeecccee-----eEEEeeecccccceecccccceEE
Confidence             23355677778888999987642     3332 2345899999998544443

>KOG2048|consensus

Probab=99.59  E-value=6.3e-13  Score=121.35  Aligned_cols=184  Identities=16%  Similarity=0.268  Sum_probs=135.2

Q ss_pred             CCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788          7 PVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS   84 (254)
Q Consensus         7 ~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~   84 (254)
                      ...+.+|+|.+ ..|.|.+.+++|.-|| .+++++..++     .....|.+++.+|.++.+++|+.|++ +++++....
T Consensus        69 drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-----~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~  142 (691)
T KOG2048|consen   69 DRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID-----SNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPD  142 (691)
T ss_pred             CCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec-----CCCcceeEEEeCCccceEEeecCCce-EEEEecCCc
Confidence            35799999995 5899999999999999 8888885544     45678999999999999999999995 556554343


Q ss_pred             ceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------e-c---eeEEEEec------
Q psy12788         85 VWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------K-G---KFEMIYVS------  143 (254)
Q Consensus        85 ~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------~-~---~~~~~~~~------  143 (254)
                      ..+.  ...+. ..++|.+++|+|+|..||.|+.||.|++||+..+...+          + .   .+.+.+..      
T Consensus       143 ~I~~--~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s  220 (691)
T KOG2048|consen  143 KITY--KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS  220 (691)
T ss_pred             eEEE--EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence            3332  12222 34799999999999999999999999999986543322          1 0   12222322      


Q ss_pred             ---CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC-cEEEEEECCCcEEEEeccCCce
Q psy12788        144 ---PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN-DRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       144 ---~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~-~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                         -+.+..||...++   .+.-.+.+...|.+++..++ +++++++-|+++.-+.+.+++-
T Consensus       221 gDS~G~V~FWd~~~gT---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGT---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ecCCceEEEEcccCcc---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence               2468889888773   22222345567999999987 5778888999999888887754

>KOG0268|consensus

Probab=99.59  E-value=2.6e-14  Score=122.22  Aligned_cols=227  Identities=15%  Similarity=0.193  Sum_probs=147.3

Q ss_pred             CccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEE
Q psy12788          1 GRVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIK   75 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~   75 (254)
                      +.|-+|...|+++|=+|+   .++|||.||.|++|| .+-+++.+|+     .|.+.|..++++-  ..+++.+.| .++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-----AH~G~V~Gi~v~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-----AHEGLVRGICVTQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-----cccCceeeEEecc--cceEEecCCccee
Confidence            467899999999999985   599999999999999 5667787776     7888999999987  445666667 488


Q ss_pred             EEEecCCC-----------------------------cceeecCceecC----CCCcEeEEEEecCC-CeEEEeecCCcE
Q psy12788         76 LFAWSPSK-----------------------------SVWEEQPNKTIP----NLYTISALSWKRDG-SRIACGGLCGSV  121 (254)
Q Consensus        76 l~d~~~~~-----------------------------~~~~~~~~~~~~----~~~~i~~l~~spdG-~~la~g~~dg~v  121 (254)
                      .|..+..-                             ..|.+.+..-+.    ....|.++.|+|-- ..||++..|++|
T Consensus       133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            88632100                             133221000000    12368889999975 467777799999


Q ss_pred             EEEeeeeeeeEee--------------ceeEEEE-ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEE
Q psy12788        122 ELFESVLKRTIWK--------------GKFEMIY-VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVA  185 (254)
Q Consensus       122 ~iwd~~~~~~~~~--------------~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~  185 (254)
                      .+||++...++.+              ..|.++. .-|..+..+|+..=.  ..+...-.+...|.+|+|+|-+ .|++|
T Consensus       213 vLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             EEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhccc
Confidence            9999876543321              1122221 123445555554322  2333434566799999999987 47888


Q ss_pred             ECCCcEEEEeccCCc------------eeeEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeecCeeeeee
Q psy12788        186 RTPDTLLLGDLHRNL------------LSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCV  245 (254)
Q Consensus       186 ~~d~~i~i~dl~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  245 (254)
                      +-|.+|+|+....+.            +..|+|+ .+  .+|.+      ..-+++.+.|++-.-.|-||-+
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S-~D--skyi~------SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS-MD--SKYII------SGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEe-cc--ccEEE------ecCCCcceeeeecchhhhcCCC
Confidence            999999999887543            5667776 32  33432      2233455666655555555543

>KOG1539|consensus

Probab=99.59  E-value=2.3e-14  Score=133.26  Aligned_cols=151  Identities=13%  Similarity=0.168  Sum_probs=118.1

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~   79 (254)
                      ..|+.+|.+|+-+.  +.++|++.||.+++|| ....++..++      -...++++..+....++|++..| .|+++|.
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR------LGSSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec------cCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence            47999999999986  4699999999999999 5556665553      23568899999999999999988 6999996


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      .+++-.     .....|..+|++++|||||++|++++.|++|++||+.++.++-.                         
T Consensus       564 ~t~kvv-----R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~-------------------------  613 (910)
T KOG1539|consen  564 VTRKVV-----REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG-------------------------  613 (910)
T ss_pred             hhhhhh-----HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee-------------------------
Confidence            543321     12234778999999999999999999999999999866554411                         


Q ss_pred             eEEEEecCCCceeEEEEecCcEEEE-EECC-CcEEEEe
Q psy12788        160 GVILKSQYGYEITDVAIMGNDRYLV-ARTP-DTLLLGD  195 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d-~~i~i~d  195 (254)
                       +    ....+.+++.|+|++.|++ ++.| ..|++|.
T Consensus       614 -~----~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  614 -L----LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -E----ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence             1    1245788999999987754 6666 5999994

>KOG0301|consensus

Probab=99.58  E-value=5.9e-14  Score=128.32  Aligned_cols=151  Identities=11%  Similarity=0.129  Sum_probs=119.8

Q ss_pred             cccCCCCCEEEEecC-CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          3 VVQHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +.+|+..|++++.-| +.++|||.|++||+|.. |+++++|.     +|.+-|..+++-|++. |++++.|+ ||+|+..
T Consensus       136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~-----gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFS-----GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLD  208 (745)
T ss_pred             cCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhc-----cchhheeeeEEecCCC-eEeecCCceEEEEecc
Confidence            568999999998866 57999999999999974 77887776     8999999999999865 56888886 8999963


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      . ...     .....|...|++++..+++..+++++.|++++||+..  .                             .
T Consensus       209 g-e~l-----~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e-----------------------------~  251 (745)
T KOG0301|consen  209 G-EVL-----LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--E-----------------------------C  251 (745)
T ss_pred             C-cee-----eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--c-----------------------------e
Confidence            2 211     2235577789999999999999999999999999842  0                             0


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      .....+.+..|.++.+.+++..++|++|+.++||...
T Consensus       252 ~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  252 VQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            1111234556888888888999999999999999766

>KOG0639|consensus

Probab=99.58  E-value=4.8e-14  Score=125.02  Aligned_cols=210  Identities=14%  Similarity=0.214  Sum_probs=146.6

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCC--C--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEE
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYESD--G--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKL   76 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~--g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l   76 (254)
                      ..|..-|.+++.+.  +.+.|||. +.|+|||..  |  .++..++..   ..+.-|.++.++|||+.|++|+.- .+-|
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl---~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL---NRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc---CcccceeeeEecCCCceEEeccccceeee
Confidence            46888889999975  47889886 569999932  3  344444422   234679999999999999999977 5889


Q ss_pred             EEecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      ||+........    .++... ....+++.|||.+.+.+++.||.|.|||+...                 ..|.++.  
T Consensus       492 WDLAapTprik----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-----------------~~Vrqfq--  548 (705)
T KOG0639|consen  492 WDLAAPTPRIK----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-----------------TLVRQFQ--  548 (705)
T ss_pred             eeccCCCcchh----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-----------------eeeeccc--
Confidence            99864333211    122221 25788999999999999999999999997422                 2222221  


Q ss_pred             CceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCce----------eeEe------C------------
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLL----------SEVL------W------------  206 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~----------~~~~------~------------  206 (254)
                                .+.+.+.+|.++.++ ++.+++-|++++-||+++++-          ..+-      |            
T Consensus       549 ----------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  549 ----------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             ----------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEE
Confidence                      122457788998777 688999999999999997641          1110      1            


Q ss_pred             -CCCCCceeEEe---eCceEEEEEeCCeeEEEEeecCeeeeeeecCCcC
Q psy12788        207 -PDSGRNEKFYF---DNVTVCLVFNAGELSIIEYGNNEILTCVRIPTDS  251 (254)
Q Consensus       207 -~~~~g~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  251 (254)
                       + ..+.++|.+   +..+.++-|...---++-.|.+..|+.-||++--
T Consensus       619 lh-~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  619 LH-TSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             Ee-cCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence             1 345577766   4456667777744556778889999999998743

>KOG2445|consensus

Probab=99.57  E-value=1.3e-12  Score=109.93  Aligned_cols=188  Identities=15%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CC--C--CEEEEeeecCCCCCCCCEEEEEECC-C-CCEEEEEeCCc-
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SD--G--RVHRIFDYTAPHYKEREFTVACSSP-S-GQAVVVGSYDN-   73 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~--g--~~~~~~~~~~~~~~~~~v~~~a~sP-d-g~~la~gs~d~-   73 (254)
                      .+|..-|.++.|+.  +++|+||.|.+++||| .+  |  .+....+     .|.+.|..+.|.| . |+.+|++|+|+ 
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-----ah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-----AHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-----ecCCcEEEEEecCccccceEEEEecCCc
Confidence            36888899999985  7899999999999999 43  3  2333332     6888999999954 3 89999999996 


Q ss_pred             EEEEEec-----CCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeee------eeEee------
Q psy12788         74 IKLFAWS-----PSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLK------RTIWK------  134 (254)
Q Consensus        74 i~l~d~~-----~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~------~~~~~------  134 (254)
                      ++||.=.     .....|... .........|++|.|.|-  |-.||+++.||.+|||++..-      .++.+      
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eeeeeecccccccccceeEEE-EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            8999742     111344331 122234568999999996  889999999999999986311      00000      


Q ss_pred             --c-----eeEEE------------EecCC------eEEEEeCCCCC-ceeeEEEEecCCCceeEEEEecCc-----EEE
Q psy12788        135 --G-----KFEMI------------YVSPS------QVLVKPLSGES-KGRGVILKSQYGYEITDVAIMGND-----RYL  183 (254)
Q Consensus       135 --~-----~~~~~------------~~~~~------~~~v~~~~~~~-~~~~~~l~s~~~~~i~~i~~~~~~-----~~~  183 (254)
                        +     .|.++            ..+++      +++||....+. +-.++.--..++.+|+.|+|.|+-     .++
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence              0     01111            11222      56677655442 111111113456799999999852     345


Q ss_pred             EEECCCcEEEEeccC
Q psy12788        184 VARTPDTLLLGDLHR  198 (254)
Q Consensus       184 v~~~d~~i~i~dl~~  198 (254)
                      +|+.|+ |+||.+..
T Consensus       244 vA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKV  257 (361)
T ss_pred             EeecCc-EEEEEEee
Confidence            677777 99999874

>KOG1273|consensus

Probab=99.57  E-value=8.6e-13  Score=111.36  Aligned_cols=191  Identities=21%  Similarity=0.328  Sum_probs=124.8

Q ss_pred             CEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCc-
Q psy12788         10 PYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKS-   84 (254)
Q Consensus        10 v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~-   84 (254)
                      -.++.|++  ++||+|..||.|.||| .+-+.-+.|.     +|-.+|++++|||||+.|+++|.| .+.+||+..... 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-----aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-----AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-----ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            56888986  6899999999999999 4433333332     788999999999999999999999 589999865432 


Q ss_pred             --------ceee----cC-ce-------------ecC---C-----C------CcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788         85 --------VWEE----QP-NK-------------TIP---N-----L------YTISALSWKRDGSRIACGGLCGSVELF  124 (254)
Q Consensus        85 --------~~~~----~~-~~-------------~~~---~-----~------~~i~~l~~spdG~~la~g~~dg~v~iw  124 (254)
                              .|..    .. .+             .+.   |     .      ..-....|.+.|++|.+|...|.+.++
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence                    1110    00 00             000   0     0      011123477889999999999999999


Q ss_pred             eeeeeeeEe-----------------eceeEEEEecCCeEEEEeCC---CCCceeeEEEEecCCCce-----eEEEEecC
Q psy12788        125 ESVLKRTIW-----------------KGKFEMIYVSPSQVLVKPLS---GESKGRGVILKSQYGYEI-----TDVAIMGN  179 (254)
Q Consensus       125 d~~~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~s~~~~~i-----~~i~~~~~  179 (254)
                      |..+-+++.                 .+.|.+...+|..++.+++.   ..+.+......-.+..-|     .++.|+++
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            976544332                 34566777788888888764   111000010000000112     26778898


Q ss_pred             cEEEEEECCC--cEEEEeccCCceeeEe
Q psy12788        180 DRYLVARTPD--TLLLGDLHRNLLSEVL  205 (254)
Q Consensus       180 ~~~~v~~~d~--~i~i~dl~~~~~~~~~  205 (254)
                      +.|++|++.+  .++||.-..|.+..+.
T Consensus       261 geYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             ccEEEeccccceeEEEEecCCcceeeee
Confidence            9999988744  8999998888655443

>KOG0299|consensus

Probab=99.56  E-value=5.8e-13  Score=116.90  Aligned_cols=221  Identities=14%  Similarity=0.171  Sum_probs=158.8

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +|...+.+++-+++  +||+|+.|+.|.||+ .+++.++.|.     +|.+.|.+++|--.-..+-+++.|+ +++|+.+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-----ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-----GHRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-----ccccceeeeeeecCccceeeeecCCceEEEehh
Confidence            78899999999985  899999999999999 7888886654     8999999999987777788899995 9999965


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-eeeEeec---ee----------EEEEecCCe
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-KRTIWKG---KF----------EMIYVSPSQ  146 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~~~---~~----------~~~~~~~~~  146 (254)
                      .....     ...+.|+..|.+|.-..-++.+-+|+.|.++++|++.. -++++.+   .+          .++-++++.
T Consensus       275 ~~s~v-----etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~  349 (479)
T KOG0299|consen  275 QLSYV-----ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGS  349 (479)
T ss_pred             HhHHH-----HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCce
Confidence            32211     22467888899999988888888899999999999742 2333322   11          223345678


Q ss_pred             EEEEeCCCCCceeeEEEEe-cC----C-------CceeEEEEecCc-EEEEEECCCcEEEEeccCCce-eeEeCCCCCCc
Q psy12788        147 VLVKPLSGESKGRGVILKS-QY----G-------YEITDVAIMGND-RYLVARTPDTLLLGDLHRNLL-SEVLWPDSGRN  212 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s-~~----~-------~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~-~~~~~~~~~g~  212 (254)
                      +-+|++....   .+.... .|    .       ..|++++..|.. -++.++.++.+++|-++.|.- ..+..      
T Consensus       350 IaLWs~~KKk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~------  420 (479)
T KOG0299|consen  350 IALWSLLKKK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY------  420 (479)
T ss_pred             EEEeeecccC---ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee------
Confidence            8899988763   222221 11    1       168899988754 455677799999999988731 11111      


Q ss_pred             eeEEeeCceEEEEEeC-CeeEEEEeecCeeeeee
Q psy12788        213 EKFYFDNVTVCLVFNA-GELSIIEYGNNEILTCV  245 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  245 (254)
                       -+.+.+-+..+.|+. |...++..|....+|+=
T Consensus       421 -~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  421 -SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             -ecccccEEEEEEEccCCCEEEEeccccccccee
Confidence             112334466677666 88899999988888863

>KOG0646|consensus

Probab=99.56  E-value=3.5e-13  Score=118.42  Aligned_cols=191  Identities=16%  Similarity=0.187  Sum_probs=128.6

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      +++|.+|+-+|.  +|+.|+.-+.+++|. .+|+++..+.     .|-..|+++.|+-||.+|.+||.|+ +.+|++..-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-----aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-----AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-----hhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence            567899988874  455555899999999 8999985553     6777999999999999999999996 899986321


Q ss_pred             Ccce---eec-CceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeeeEeeceeE-------------EEEec
Q psy12788         83 KSVW---EEQ-PNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRTIWKGKFE-------------MIYVS  143 (254)
Q Consensus        83 ~~~~---~~~-~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~~~~~~~~-------------~~~~~  143 (254)
                      -...   ... ......|.-+|+++...+-  ..+|++++.|.++++||+..+.++..-.|.             ..|++
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence            1000   000 0122335568999887665  468999999999999999888766433221             12332


Q ss_pred             C--CeEEEEeCC--CC------------CceeeEEEEecCC-CceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        144 P--SQVLVKPLS--GE------------SKGRGVILKSQYG-YEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       144 ~--~~~~v~~~~--~~------------~~~~~~~l~s~~~-~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .  +.+-+-++.  ++            ...+...+.++.+ .+|++++++-|+.+ +.|+.|+.++|||+.+.++.
T Consensus       236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            2  222211111  00            0012233333333 48999999998865 55778999999999987653

>KOG0644|consensus

Probab=99.56  E-value=9.3e-15  Score=135.89  Aligned_cols=232  Identities=14%  Similarity=0.173  Sum_probs=159.6

Q ss_pred             CccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          1 GRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      ++|.+|-..|+|++|+.  .+|++|+.|..+|||. .++.|+.++.     ||...|+.+|.+.+..++|++|.|. ||+
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-----Ghs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-----GHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-----CCccccchhccchhhhhhhhcccCceEEE
Confidence            36889999999999985  5899999999999999 7888986654     9999999999999999999999997 899


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------------c-------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------G-------  135 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------~-------  135 (254)
                      |.+......     .....|.+.|++++|||--    +.+.||++++||.+..-..+.              -       
T Consensus       259 Wrl~~~~pv-----svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~  329 (1113)
T KOG0644|consen  259 WRLPDGAPV-----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD  329 (1113)
T ss_pred             EecCCCchH-----HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence            986433221     2235678899999999975    678899999999862111110              0       


Q ss_pred             ------------ee-------------EEEEecC-----------CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC
Q psy12788        136 ------------KF-------------EMIYVSP-----------SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN  179 (254)
Q Consensus       136 ------------~~-------------~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~  179 (254)
                                  .+             ..+.+++           -...+|++.++   +..-....+.+++..+.++|-
T Consensus       330 ~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  330 RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence                        00             0111211           12345666555   222222334557888888875


Q ss_pred             cE--EEEEECCCcEEEEeccCCceeeEeCCCCCCceeE--EeeCceEEEEEeC--CeeEEEEeecCe----------eee
Q psy12788        180 DR--YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF--YFDNVTVCLVFNA--GELSIIEYGNNE----------ILT  243 (254)
Q Consensus       180 ~~--~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~--g~~~~~~~~~~~----------~~~  243 (254)
                      +.  ...++.|+...|||+-.|....+.+. +.+ +.+  .|..+.+..+.++  |.+.+.+.|..+          ++|
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~-gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~  484 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-GHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLG  484 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeec-ccc-eeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeec
Confidence            53  34588899999999998865555543 222 111  2455566667666  777777777433          666


Q ss_pred             eeecCCcC
Q psy12788        244 CVRIPTDS  251 (254)
Q Consensus       244 ~~~~~~~~  251 (254)
                      -.|++-++
T Consensus       485 dyrplird  492 (1113)
T KOG0644|consen  485 DYRPLIRD  492 (1113)
T ss_pred             Cccccccc
Confidence            66666554

>KOG1524|consensus

Probab=99.55  E-value=4.8e-14  Score=125.85  Aligned_cols=170  Identities=17%  Similarity=0.280  Sum_probs=127.5

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~   80 (254)
                      +..|...+.+-.|+++  .|+++|+||.|++|.++|-+..++.     ....+|+|++|.|+.+-++-+..+.+.+--+.
T Consensus       100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~-----Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~  174 (737)
T KOG1524|consen  100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV-----QNEESIRCARWAPNSNSIVFCQGGHISIKPLA  174 (737)
T ss_pred             hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh-----hcCceeEEEEECCCCCceEEecCCeEEEeecc
Confidence            4578899999999986  6999999999999999886553332     34568999999999988777665655343322


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      .....     .+-..|.+-|.++.|||...+|++|+.|-.-++||.. |+                             .
T Consensus       175 ~n~k~-----i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~-----------------------------~  219 (737)
T KOG1524|consen  175 ANSKI-----IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GA-----------------------------N  219 (737)
T ss_pred             cccce-----eEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cc-----------------------------c
Confidence            21211     2345688899999999999999999999999999952 11                             1


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCcee
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEK  214 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~  214 (254)
                      +.-.+.+.++|++|+|.|+..|+++ +-+++++-....|.+..+.|+ ++|.+.
T Consensus       220 Lf~S~~~ey~ITSva~npd~~~~v~-S~nt~R~~~p~~GSifnlsWS-~DGTQ~  271 (737)
T KOG1524|consen  220 LFTSAAEEYAITSVAFNPEKDYLLW-SYNTARFSSPRVGSIFNLSWS-ADGTQA  271 (737)
T ss_pred             cccCChhccceeeeeeccccceeee-eeeeeeecCCCccceEEEEEc-CCCcee
Confidence            1112234679999999997555555 456888889999999999999 766644

>KOG0308|consensus

Probab=99.55  E-value=1.1e-13  Score=125.87  Aligned_cols=188  Identities=14%  Similarity=0.227  Sum_probs=136.2

Q ss_pred             ccccCCCCCEEEEe-cC--CeEEEEeCCCcEEEEe-CCC--CEEEEeee----cCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          2 RVVQHPVPPYALSW-PA--GYILAAGSDRIVTIYE-SDG--RVHRIFDY----TAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         2 ~l~~h~~~v~~l~w-~~--~~l~s~s~D~~i~vWd-~~g--~~~~~~~~----~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      .+..|+.-|.+|+. .+  ..+||||.|+.|.+|| ..|  +.+.+++.    .+..++...|+++|-+|.|..|++|+.
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            36789999999998 43  4799999999999999 555  23333321    111156678999999999999999998


Q ss_pred             Cc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------------ce
Q psy12788         72 DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------GK  136 (254)
Q Consensus        72 d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------~~  136 (254)
                      .+ +|+||-....+.     .+...|...|..+-.++||+++++++.||+|++||+.-+|++..              ..
T Consensus       192 ek~lr~wDprt~~ki-----mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKI-----MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS  266 (735)
T ss_pred             ccceEEeccccccce-----eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence            87 899996554443     33457888999999999999999999999999999876665532              12


Q ss_pred             eEEEEecC--CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC-cEEEEEECCCcEEEEecc
Q psy12788        137 FEMIYVSP--SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN-DRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       137 ~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~-~~~~v~~~d~~i~i~dl~  197 (254)
                      |...|+++  +.+...|+.+.   ....+.....++|..+...-. ..+.++.+|..|+-|-++
T Consensus       267 f~~vYsG~rd~~i~~Tdl~n~---~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  267 FTHVYSGGRDGNIYRTDLRNP---AKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             cceEEecCCCCcEEecccCCc---hhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            33445554  35666677765   223333344567887777633 356889999999999665

>KOG0647|consensus

Probab=99.55  E-value=1.8e-13  Score=114.69  Aligned_cols=152  Identities=11%  Similarity=0.148  Sum_probs=105.7

Q ss_pred             CCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         49 YKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        49 ~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      +.++.|.+++||| ...+++.||+|+ +|+|+++.. +....  .....+.++|.+++||.||+.+++|+.|+.+++||+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            4457899999999 556777899995 999998753 22211  223456789999999999999999999999999997


Q ss_pred             eeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc---EEEEEECCCcEEEEeccCCce-e
Q psy12788        127 VLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND---RYLVARTPDTLLLGDLHRNLL-S  202 (254)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~---~~~v~~~d~~i~i~dl~~~~~-~  202 (254)
                      .+++..                             .+ ..|..+|..+.+-+..   -+++++-|+||++||++..+. .
T Consensus       102 ~S~Q~~-----------------------------~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~  151 (347)
T KOG0647|consen  102 ASGQVS-----------------------------QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA  151 (347)
T ss_pred             cCCCee-----------------------------ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence            654322                             11 1234567777776422   357788899999999997653 2


Q ss_pred             eEeCCCCCCceeEEe--eCceEEEEEeCCeeEEEEee
Q psy12788        203 EVLWPDSGRNEKFYF--DNVTVCLVFNAGELSIIEYG  237 (254)
Q Consensus       203 ~~~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~  237 (254)
                      .+.-  |  ...|.+  ..+.+.++-....+.++.+.
T Consensus       152 t~~L--P--eRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  152 TLQL--P--ERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             eeec--c--ceeeehhccCceeEEEecCCcEEEEEcC
Confidence            3322  2  134433  34666666666777777774

>KOG2096|consensus

Probab=99.54  E-value=4.8e-13  Score=113.05  Aligned_cols=191  Identities=12%  Similarity=0.095  Sum_probs=120.1

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~   75 (254)
                      |.+|...|++++|+.+  .|+|++.|++||+|+ .+-  +..+.+.....   -+..+.++|+||-+.+++....  +++
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEccCCEEE
Confidence            6799999999999875  799999999999998 331  11111111111   1246889999999988776544  588


Q ss_pred             EEEecCCCc-ceeec----Cc--eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee------ceeEEEEe
Q psy12788         76 LFAWSPSKS-VWEEQ----PN--KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK------GKFEMIYV  142 (254)
Q Consensus        76 l~d~~~~~~-~~~~~----~~--~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~------~~~~~~~~  142 (254)
                      +|....++. .....    ..  .+..|.-.|-++..--.+++|++++.|..|.+|+.. |+.+..      ..+....+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            887653321 11110    00  112233467778888889999999999999999986 443321      11222222


Q ss_pred             cCC----------eEEEEeCCC---CCce--eeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEecc
Q psy12788        143 SPS----------QVLVKPLSG---ESKG--RGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       143 ~~~----------~~~v~~~~~---~~~~--~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~  197 (254)
                      +++          .+.||..--   |..+  .++.--..+...|...+|+++. +.++++.|++++|||..
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            222          355565421   1100  1111112344579999999866 67789999999999866

>KOG1063|consensus

Probab=99.54  E-value=8e-14  Score=127.45  Aligned_cols=165  Identities=17%  Similarity=0.169  Sum_probs=114.3

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCC-----cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDR-----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~-----~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      ||-||...|++|+-+|  +.|||++.-.     -|++|+ .+-...+.+    . +|.-.|+.++|||||++|++.|.|+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L----~-~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL----E-GHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee----c-ccceEEEEEEECCCCcEEEEeecCc
Confidence            7889999999999997  5788876533     399998 444444333    3 8999999999999999999999996


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeC
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  152 (254)
                       +.||...... ..+........|..-|.+++|+||++++|++|.|++|.+|.....+-.    +           +.+.
T Consensus       595 t~sl~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~----~-----------i~~~  658 (764)
T KOG1063|consen  595 TVSLYEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK----Y-----------ISRF  658 (764)
T ss_pred             eEEeeeeeccc-chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh----h-----------hhhh
Confidence             7899853211 111111123456677999999999999999999999999986432100    0           0000


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCc------EEEEEECCCcEEEEecc
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGND------RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~------~~~v~~~d~~i~i~dl~  197 (254)
                      +        .  -.++..|+.+++.+-.      -.++|-..+.|.||...
T Consensus       659 a--------~--~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  659 A--------C--LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             c--------h--hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            0        0  1345678888876532      23456667888888743

>KOG1274|consensus

Probab=99.53  E-value=8.3e-14  Score=130.67  Aligned_cols=123  Identities=22%  Similarity=0.356  Sum_probs=93.5

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCC---CCCCCCEEEEEECCCCCEEEEEeCC-cE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAP---HYKEREFTVACSSPSGQAVVVGSYD-NI   74 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~---~~~~~~v~~~a~sPdg~~la~gs~d-~i   74 (254)
                      .+.+|+.+|.+|.++|  ++||+.+.||++++|| .++.+..++....+   ......++.++|+|+|-.||+-+.| .|
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence            5789999999999998  4799999999999999 78877766642211   0013456789999996666665555 59


Q ss_pred             EEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         75 KLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ++|+    +..|+...... ..+...+..++|||.|+|||+++.||.|.|||..+
T Consensus       213 kvy~----r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  213 KVYS----RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEc----cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9998    67787632211 12234599999999999999999999999999863

>KOG0646|consensus

Probab=99.52  E-value=2.5e-12  Score=113.17  Aligned_cols=131  Identities=24%  Similarity=0.264  Sum_probs=95.5

Q ss_pred             CCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         51 EREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      +++|.+++-+|+|.+|+.|.-. .+.+|.+++....     .....|-..|+++.|+-||++|++|+.||.|.+|++..-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence            6789999999999999888666 4889987754422     122345568999999999999999999999999987411


Q ss_pred             eeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec---CcEEEEEECCCcEEEEeccCCce-eeEe
Q psy12788        130 RTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG---NDRYLVARTPDTLLLGDLHRNLL-SEVL  205 (254)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~---~~~~~v~~~d~~i~i~dl~~~~~-~~~~  205 (254)
                                  +++.+     -.+.   ..+...++|.-.|+++.+.+   +.++++++.|+++++||+..|.+ ..+.
T Consensus       156 ------------v~a~~-----~~~~---~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  156 ------------VSADN-----DHSV---KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             ------------ccccc-----CCCc---cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence                        11100     0011   33445556677888888864   34788999999999999999975 3444


Q ss_pred             C
Q psy12788        206 W  206 (254)
Q Consensus       206 ~  206 (254)
                      +
T Consensus       216 f  216 (476)
T KOG0646|consen  216 F  216 (476)
T ss_pred             c
Confidence            4

>KOG1036|consensus

Probab=99.51  E-value=1.8e-12  Score=108.96  Aligned_cols=149  Identities=11%  Similarity=0.213  Sum_probs=111.6

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      ..|..+.|+|  +.|+++|.|+++++|| ..-.+...+      .|..++.+++|.++. .+++|+.|+ +|++|++...
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~------~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF------KHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe------ecCCceeeeeccCCc-eEEEeccCceEEEEEecCCc
Confidence            5689999986  4688888999999999 333333223      467899999999854 567888886 9999987644


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      .      ...-.|...|.+|.+++--..+++|+-|++|++||.+.+....                 ..           
T Consensus        87 ~------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~-----------------~~-----------  132 (323)
T KOG1036|consen   87 E------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG-----------------TF-----------  132 (323)
T ss_pred             c------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc-----------------cc-----------
Confidence            3      1223466789999999988899999999999999986422110                 01           


Q ss_pred             EecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        164 KSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                        ..+..|.++...+ ++++||..++.+.+|||+.-.
T Consensus       133 --d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  133 --DQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             --ccCceEEEEeccC-CEEEEeecCceEEEEEccccc
Confidence              1233677777774 789999999999999998754

>KOG0290|consensus

Probab=99.51  E-value=1.3e-12  Score=109.22  Aligned_cols=189  Identities=14%  Similarity=0.191  Sum_probs=129.4

Q ss_pred             ccCCCCCEEEEecCC-------eEEEEeCCCcEEEEe-C--CCC--EEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEe
Q psy12788          4 VQHPVPPYALSWPAG-------YILAAGSDRIVTIYE-S--DGR--VHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGS   70 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~-------~l~s~s~D~~i~vWd-~--~g~--~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs   70 (254)
                      ..|+.+++.+-|.|+       +|||.| | .+|+|. .  +++  +...+.......+..++++..|+- +-+++.+.|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            478999999999763       466553 3 699996 2  232  121221111213556899999975 668899999


Q ss_pred             CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeee---eEeec----------
Q psy12788         71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKR---TIWKG----------  135 (254)
Q Consensus        71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~---~~~~~----------  135 (254)
                      -|+ ..|||+..+....-  ....+.|..+|..|+|+.+|. .+|+.+.||+||+||++...   .+|+.          
T Consensus       171 iDTTCTiWdie~~~~~~v--kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTV--KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             ccCeEEEEEEeeccccce--eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence            995 78999876422111  144578889999999999764 68999999999999986432   22321          


Q ss_pred             -------eeEEEEecC-CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        136 -------KFEMIYVSP-SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       136 -------~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                             .|..+|.-+ ..+++-|++...  ..+.--..|+..|+.|++.|..  .+.+|+.|..+.||||..
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                   133444433 478888988663  2233224567789999999854  577888899999999874

>KOG1523|consensus

Probab=99.51  E-value=1e-12  Score=110.97  Aligned_cols=181  Identities=17%  Similarity=0.167  Sum_probs=125.0

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC-EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~-~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      |..|...|+.++|+|  +.|++|+.|+..+||. .+|. =..++.  +. .+...++++.|+|..+.||+||.-+ +-||
T Consensus        51 ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv--Ll-RiNrAAt~V~WsP~enkFAVgSgar~isVc  127 (361)
T KOG1523|consen   51 LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV--LL-RINRAATCVKWSPKENKFAVGSGARLISVC  127 (361)
T ss_pred             hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee--EE-EeccceeeEeecCcCceEEeccCccEEEEE
Confidence            567999999999998  5899999999999998 3553 222222  11 4567899999999999999999776 6788


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      -+..+ +.|=......++....|++++|+|++-+||+|+.|+..|+|....+....+.          .--.|+....  
T Consensus       128 y~E~E-NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp----------ap~pWgsk~P--  194 (361)
T KOG1523|consen  128 YYEQE-NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP----------APTPWGSKMP--  194 (361)
T ss_pred             EEecc-cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC----------CCCCCccCCc--
Confidence            76543 3442211334556678999999999999999999999999986443221110          0001111111  


Q ss_pred             eeeEEEE-ecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC
Q psy12788        158 GRGVILK-SQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN  199 (254)
Q Consensus       158 ~~~~~l~-s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~  199 (254)
                      |..++.. +..++.|..+.|++++.-+ =.+.|.++.+.|....
T Consensus       195 FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  195 FGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             HHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            1111111 1346789999999887544 4778999999987755

>KOG1034|consensus

Probab=99.50  E-value=4.7e-13  Score=113.40  Aligned_cols=192  Identities=15%  Similarity=0.213  Sum_probs=131.4

Q ss_pred             CccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788          1 GRVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK   75 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~   75 (254)
                      |.+.+|...|..+.+.|   +++++||.|.+||+|| +++.|+..|. ... +|.++|-++.|+++|.+||++++|. ++
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-G~e-gHrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-GVE-GHRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-ccc-cccCcEEEEEEcCCCCeeeccCCcceEE
Confidence            46789999999999987   5899999999999999 8889998884 445 8999999999999999999999995 99


Q ss_pred             EEEecCCC--cceeec-------CceecC--------------CCCcEeEEEEecCCCeEEEeecCCcEEEEee-eeeee
Q psy12788         76 LFAWSPSK--SVWEEQ-------PNKTIP--------------NLYTISALSWKRDGSRIACGGLCGSVELFES-VLKRT  131 (254)
Q Consensus        76 l~d~~~~~--~~~~~~-------~~~~~~--------------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~-~~~~~  131 (254)
                      +|+++...  ...+..       ....++              |...|-++.|  =|.++++-+.++.|..|-. ..+..
T Consensus       207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhh
Confidence            99986311  111110       000001              1122333333  2789999999999999975 21111


Q ss_pred             Ee-----e------ce--------eEEEEe------------cCCeEEEEeCCCCCc-eeeEEEEecCCCceeEEEEecC
Q psy12788        132 IW-----K------GK--------FEMIYV------------SPSQVLVKPLSGESK-GRGVILKSQYGYEITDVAIMGN  179 (254)
Q Consensus       132 ~~-----~------~~--------~~~~~~------------~~~~~~v~~~~~~~~-~~~~~l~s~~~~~i~~i~~~~~  179 (254)
                      +.     +      +.        +-+.|.            ..+.+.+||+..... .......+..+..|+..+|+-+
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d  364 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD  364 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence            00     0      01        111111            235789999986642 1233444555778999999988


Q ss_pred             cEEEEE-ECCCcEEEEec
Q psy12788        180 DRYLVA-RTPDTLLLGDL  196 (254)
Q Consensus       180 ~~~~v~-~~d~~i~i~dl  196 (254)
                      +.++++ +.|.++.-||-
T Consensus       365 gs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  365 GSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CcEEEEEeCCCcEEEEEe
Confidence            887765 55779988884

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=1e-12  Score=107.32  Aligned_cols=111  Identities=16%  Similarity=0.317  Sum_probs=80.7

Q ss_pred             CCCCEEEEecCC--eE--EEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---c-EEEEE
Q psy12788          7 PVPPYALSWPAG--YI--LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---N-IKLFA   78 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l--~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~-i~l~d   78 (254)
                      ..+|.+++|+|+  .|  ++|..+.+|.+||.+++.+..+.       ...++.+.|||+|++||+|+.+   + +.+||
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            457999999984  44  34556789999997787775553       2467899999999999998754   3 78999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTI  132 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~  132 (254)
                      .+....      ....++ ..++.++|||||++|++++.      |..++||+. .|+.+
T Consensus       132 ~~~~~~------i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l  183 (194)
T PF08662_consen  132 VRKKKK------ISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLL  183 (194)
T ss_pred             CCCCEE------eecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEe
Confidence            652221      222223 35789999999999999884      678888886 34443

>KOG0267|consensus

Probab=99.49  E-value=9.9e-14  Score=127.39  Aligned_cols=200  Identities=16%  Similarity=0.201  Sum_probs=137.6

Q ss_pred             ccccCCCCCEEEEec--CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWP--AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~--~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +...|...|.++..-  ...+++|+.|..+-+|. ..-.++-.|    . +|+.+|-++.|+++-.+|++|+.++ |++|
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~----~-~hespIeSl~f~~~E~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL----T-GHESPIESLTFDTSERLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee----e-ccCCcceeeecCcchhhhcccccCCceeee
Confidence            455677777777653  25799999999999998 333444333    3 8999999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |+...+..     .....|...+.+|.|+|-|.+.|.|+.|+...+||.+-+-+.                         
T Consensus        98 DleeAk~v-----rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-------------------------  147 (825)
T KOG0267|consen   98 DLEEAKIV-----RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-------------------------  147 (825)
T ss_pred             ehhhhhhh-----hhhhccccCcceeeeccceEEeccccccccceehhhhccCce-------------------------
Confidence            97533211     112345668999999999999999999999999997422111                         


Q ss_pred             eeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCcee-eEeCCC-----CCCce-eEEe---eCceEEEEE
Q psy12788        158 GRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLS-EVLWPD-----SGRNE-KFYF---DNVTVCLVF  226 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~-~~~~~~-----~~g~~-~~~~---~~~~~~~~~  226 (254)
                         ....+ +-.-|..+.|+|+|+|++ ++.|++++|||+..|+++ +++-++     ..++. .|.+   ..+...-+|
T Consensus       148 ---~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~  223 (825)
T KOG0267|consen  148 ---HTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW  223 (825)
T ss_pred             ---eeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence               11111 223577889999998876 555699999999887764 222110     01111 1111   234556677


Q ss_pred             eCCeeEEEEeecCe
Q psy12788        227 NAGELSIIEYGNNE  240 (254)
Q Consensus       227 ~~g~~~~~~~~~~~  240 (254)
                      +...+.++.-++++
T Consensus       224 dletfe~I~s~~~~  237 (825)
T KOG0267|consen  224 DLETFEVISSGKPE  237 (825)
T ss_pred             ccceeEEeeccCCc
Confidence            77777777777766

>KOG1034|consensus

Probab=99.49  E-value=3.4e-12  Score=108.20  Aligned_cols=116  Identities=19%  Similarity=0.276  Sum_probs=93.6

Q ss_pred             cCCCCCEEEEecC------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EE
Q psy12788          5 QHPVPPYALSWPA------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IK   75 (254)
Q Consensus         5 ~h~~~v~~l~w~~------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~   75 (254)
                      .|+..-+.++|.=      .+||.||.-|.|||-| .++++...+.     +|...|+.+.|+|+. ++|+++|.|. +|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-----ghG~sINeik~~p~~~qlvls~SkD~svR  161 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-----GHGGSINEIKFHPDRPQLVLSASKDHSVR  161 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-----ccCccchhhhcCCCCCcEEEEecCCceEE
Confidence            4677789999951      2689999999999999 6777775554     888999999999975 7889999995 99


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +|+++......-..  --..|.+.|.++.|++||.+||+++.|.++++|++.
T Consensus       162 lwnI~~~~Cv~VfG--G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  162 LWNIQTDVCVAVFG--GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             EEeccCCeEEEEec--ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            99987654432211  112466799999999999999999999999999975

>KOG2139|consensus

Probab=99.48  E-value=4.1e-12  Score=109.04  Aligned_cols=204  Identities=12%  Similarity=0.192  Sum_probs=138.0

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCcEEEEEecCCCc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDNIKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~i~l~d~~~~~~   84 (254)
                      ..+..++|++.  -++++..|..||+||.+..+...+..    ..+..|++++|-|. ++.||+|+..+|.+|..+....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks----~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln  174 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS----VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN  174 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc----hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccc
Confidence            35678899984  48889999999999954454433432    34568999999996 4679999999988998654222


Q ss_pred             ceeec--------CceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         85 VWEEQ--------PNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        85 ~~~~~--------~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      .-...        .....++..+|+++.|++||..+++++. |..|+|||..+                          +
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt--------------------------g  228 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT--------------------------G  228 (445)
T ss_pred             cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC--------------------------C
Confidence            11100        0111233468999999999999999985 55677777533                          3


Q ss_pred             CceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEE
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSI  233 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~  233 (254)
                         ..+.|.....+.+.-+.+||++. ++++.-|...++|...... ..-+|....|        .+..-+|++ |.+.|
T Consensus       229 ---~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-t~erw~lgsg--------rvqtacWspcGsfLL  296 (445)
T KOG2139|consen  229 ---QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-TKERWILGSG--------RVQTACWSPCGSFLL  296 (445)
T ss_pred             ---CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc-eecceeccCC--------ceeeeeecCCCCEEE
Confidence               22333333345677888999875 4566679999999754332 2234542332        356678888 88888


Q ss_pred             EEeecCeeeeeeecCCcCCC
Q psy12788        234 IEYGNNEILTCVRIPTDSSE  253 (254)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~  253 (254)
                      +.......|++|--...+++
T Consensus       297 f~~sgsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  297 FACSGSPRLYSLTFDGEDSV  316 (445)
T ss_pred             EEEcCCceEEEEeecCCCcc
Confidence            88888888888876655543

>KOG1445|consensus

Probab=99.48  E-value=1.2e-13  Score=125.38  Aligned_cols=117  Identities=20%  Similarity=0.318  Sum_probs=90.8

Q ss_pred             CCCCEEEEecC---CeEEEEeCCCcEEEEe--CCCCE--EEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCC-cEEEE
Q psy12788          7 PVPPYALSWPA---GYILAAGSDRIVTIYE--SDGRV--HRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYD-NIKLF   77 (254)
Q Consensus         7 ~~~v~~l~w~~---~~l~s~s~D~~i~vWd--~~g~~--~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d-~i~l~   77 (254)
                      ...|..+.|+|   .+|+.+++|+.|++|-  .+|-.  ..+-...+. .|...|+++.|||= .+.||++++| .|+||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeee
Confidence            45689999998   4799999999999997  33311  100001122 68889999999994 5788999999 59999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      |+...+..     .+...|...|..++|||||+++|+.+.||++++|.-+.+
T Consensus       706 Dl~~~~~~-----~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  706 DLANAKLY-----SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             ehhhhhhh-----heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence            98654321     445678889999999999999999999999999997654

>KOG0771|consensus

Probab=99.48  E-value=6.3e-13  Score=115.57  Aligned_cols=154  Identities=17%  Similarity=0.222  Sum_probs=109.2

Q ss_pred             EEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee
Q psy12788         11 YALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE   87 (254)
Q Consensus        11 ~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~   87 (254)
                      ..+++++  ..|++++.|+++|||+ ++-..+...    . .|..+|.++.|||||+.||+-+.|..+||+.+.... |.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e----~-~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~-~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE----I-AHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAA-LA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh----H-hhcCccccceeCCCCcEEEEecCCceEEEEeccCch-hh
Confidence            5677776  4799999999999999 766544222    2 578899999999999999998888989999875410 00


Q ss_pred             ecC------------------------------c--------------------eecCCCCcEeEEEEecCCCeEEEeec
Q psy12788         88 EQP------------------------------N--------------------KTIPNLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        88 ~~~------------------------------~--------------------~~~~~~~~i~~l~~spdG~~la~g~~  117 (254)
                      ...                              .                    +.......|++++-|+||+++|.|+.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            000                              0                    00001237999999999999999999


Q ss_pred             CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEec
Q psy12788        118 CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDL  196 (254)
Q Consensus       118 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl  196 (254)
                      ||.|-|+++..-+..                            ......|+.-|+.+.|+|+.++++ .+.+.++.|--+
T Consensus       302 dGsVai~~~~~lq~~----------------------------~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRL----------------------------QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CCcEEEEEeceeeee----------------------------EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999987432221                            111223456899999999887655 556777776665


Q ss_pred             cC
Q psy12788        197 HR  198 (254)
Q Consensus       197 ~~  198 (254)
                      .-
T Consensus       354 ~v  355 (398)
T KOG0771|consen  354 AV  355 (398)
T ss_pred             ee
Confidence            54

>KOG1009|consensus

Probab=99.48  E-value=8e-13  Score=114.56  Aligned_cols=124  Identities=19%  Similarity=0.340  Sum_probs=91.8

Q ss_pred             CCCCEEEEecC---CeEEEEeCCCcEEEEe----CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          7 PVPPYALSWPA---GYILAAGSDRIVTIYE----SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         7 ~~~v~~l~w~~---~~l~s~s~D~~i~vWd----~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      ..+|+.+.|.+   +.|+|||.|..||+|-    ..++  ..-.+.-.+. .|...|+++.|+|+|++||+|+.++ +.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            46789999976   3799999999999994    2222  2222223455 7899999999999999999999886 778


Q ss_pred             EEecC-------C-----CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE
Q psy12788         77 FAWSP-------S-----KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI  132 (254)
Q Consensus        77 ~d~~~-------~-----~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~  132 (254)
                      |....       .     ...|... .....|...|..++|+||+.++++|+.|..+++||+..+...
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~  158 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVK-KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL  158 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEE-EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence            87541       0     1223220 122235678999999999999999999999999998766544

>KOG2106|consensus

Probab=99.47  E-value=3.9e-12  Score=113.04  Aligned_cols=163  Identities=17%  Similarity=0.227  Sum_probs=115.1

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      .+|......++-.|  +++++++.|+++++|+ +-++.-+.      .-.+++.|++|+|.| .+|+|...+ .-+.|..
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e  436 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTK------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTE  436 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEE------EecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence            47888888888877  5899999999999999 33444322      133678999999999 899998775 5577744


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      ++. ...    .... ..+++.++|||||.+||+|+.|+.|.||-+...                         +.  ..
T Consensus       437 ~~~-lv~----~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-------------------------g~--~y  483 (626)
T KOG2106|consen  437 TQD-LVT----IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-------------------------GR--KY  483 (626)
T ss_pred             cce-eEE----EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-------------------------Cc--EE
Confidence            311 111    1122 568999999999999999999999999975311                         10  11


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCc----eeeEeCC
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNL----LSEVLWP  207 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~----~~~~~~~  207 (254)
                      ..+....|..|+-+.|+++.+|+...+ |=.|+.|....-+    +.++.|.
T Consensus       484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~  535 (626)
T KOG2106|consen  484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA  535 (626)
T ss_pred             EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee
Confidence            122224457899999999889988766 5588899433221    4567775

>KOG2110|consensus

Probab=99.45  E-value=7.3e-12  Score=107.57  Aligned_cols=158  Identities=17%  Similarity=0.266  Sum_probs=112.0

Q ss_pred             CCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE-EeCC-c-EEEEEecCC
Q psy12788          7 PVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYD-N-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~-gs~d-~-i~l~d~~~~   82 (254)
                      +.+|.+|..+.++|+++=++. |.||| .+.+++.+++.. . +++..+.++++++.+.|+|- ++.+ + +.|||...-
T Consensus        87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~-~-~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETT-P-PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhcc-C-CCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            457888888888888887765 99999 788888776522 1 34455666666667779987 5555 4 889996543


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE-EEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV-ELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGV  161 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (254)
                      +..     .....|.+++-+++|||||++||+++..|+| |++.+..|...                 +.++-|.     
T Consensus       164 ~~v-----~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl-----------------~eFRRG~-----  216 (391)
T KOG2110|consen  164 QPV-----NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL-----------------YEFRRGT-----  216 (391)
T ss_pred             eee-----eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe-----------------eeeeCCc-----
Confidence            321     1223688899999999999999999999984 66665433322                 2333331     


Q ss_pred             EEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCC
Q psy12788        162 ILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRN  199 (254)
Q Consensus       162 ~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~  199 (254)
                           .-..|.+++|+++.+|+++++ .+||.|+-|+..
T Consensus       217 -----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  217 -----YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -----eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                 123688999999999988765 569999988743

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=1.2e-11  Score=100.98  Aligned_cols=117  Identities=22%  Similarity=0.302  Sum_probs=80.4

Q ss_pred             CCCEEEEEECCCCCEEEEE--eCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC---CcEEEE
Q psy12788         51 EREFTVACSSPSGQAVVVG--SYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC---GSVELF  124 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~la~g--s~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d---g~v~iw  124 (254)
                      ..+|..++|+|+|+.||+.  ..+ .+.+||.+. ..      ...++ ...++.|.|||+|++||+|+.+   |.+.+|
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~------i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w  130 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KK------IFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFW  130 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cE------eEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence            3569999999999998764  345 488999641 11      22232 4567899999999999999754   669999


Q ss_pred             eeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-C------CCcEEEEecc
Q psy12788        125 ESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-T------PDTLLLGDLH  197 (254)
Q Consensus       125 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~------d~~i~i~dl~  197 (254)
                      |....+.+..                               .....+..++++|+++|++.. +      |+.++||+..
T Consensus       131 d~~~~~~i~~-------------------------------~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  131 DVRKKKKIST-------------------------------FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ECCCCEEeec-------------------------------cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            9753322211                               111246789999999876643 2      6788999986


Q ss_pred             CCceeeEeC
Q psy12788        198 RNLLSEVLW  206 (254)
Q Consensus       198 ~~~~~~~~~  206 (254)
                      ...+.+..+
T Consensus       180 G~~l~~~~~  188 (194)
T PF08662_consen  180 GRLLYKKPF  188 (194)
T ss_pred             CeEeEecch
Confidence            655555443

>KOG0301|consensus

Probab=99.45  E-value=2e-11  Score=112.02  Aligned_cols=195  Identities=12%  Similarity=0.144  Sum_probs=131.4

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      +|++|+.|.+|.+|. ...+++    +.++ +|+..|.+++..-++. +++||+|. +++|-.....       ....+|
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P~----~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-------~~l~gH  139 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEPL----YTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-------YSLQGH  139 (745)
T ss_pred             ceEeecccceEEEEecCCCCch----hhhh-ccccceeeeecCCcCc-eEecccccceEEecchhhh-------cccCCc
Confidence            699999999999999 566788    4455 9999999999888887 88999995 8999843211       123567


Q ss_pred             CCcEeEEEEecCCCeEEEeecCCcEEEEeeee--eeeE-----------eeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         97 LYTISALSWKRDGSRIACGGLCGSVELFESVL--KRTI-----------WKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~--~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      ...|.+++.=|++ .+++||.|++|++|.--.  +.+.           .+....+....|+.++.|++..+      .+
T Consensus       140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge------~l  212 (745)
T KOG0301|consen  140 TASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE------VL  212 (745)
T ss_pred             chheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc------ee
Confidence            8899999999998 778999999999997421  1110           11112234455778999999444      33


Q ss_pred             EecCCC--ceeEEEEec-CcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeE---EeeCceEEEEEeCCeeEEEEee
Q psy12788        164 KSQYGY--EITDVAIMG-NDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF---YFDNVTVCLVFNAGELSIIEYG  237 (254)
Q Consensus       164 ~s~~~~--~i~~i~~~~-~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~g~~~~~~~~  237 (254)
                      ...+|+  -|.+++... ++.+++++.|++++||+..  .+..+--. |+ ...+   .+.+..+...-++|-+.++.-.
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-Pt-tsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PT-TSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-Cc-cceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            334454  488888544 4456778899999999866  23222111 22 2222   2344555566666666655444

>KOG0268|consensus

Probab=99.45  E-value=3.6e-13  Score=115.36  Aligned_cols=149  Identities=12%  Similarity=0.188  Sum_probs=106.9

Q ss_pred             EEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788         11 YALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV   85 (254)
Q Consensus        11 ~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~   85 (254)
                      .++.|+|   +.|++|+.|+.|.+|| +.+.+++.+...      ...+.++|+|.+--|++|+.| .+..||...-...
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeee------ccccceecCccccceeeccccccceehhhhhhccc
Confidence            4444454   4688999999999999 888887665432      346789999988889999999 4888885321111


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS  165 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  165 (254)
                      .    .....|...|.++.|||.|+-+++|+.|++|+||.+.-++.+.  .|               .+.    +     
T Consensus       265 ~----~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iY---------------htk----R-----  314 (433)
T KOG0268|consen  265 L----NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IY---------------HTK----R-----  314 (433)
T ss_pred             c----hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hh---------------hHh----h-----
Confidence            1    2234566789999999999999999999999999875433220  00               000    0     


Q ss_pred             cCCCceeEEEEecCcEEEEEEC-CCcEEEEecc
Q psy12788        166 QYGYEITDVAIMGNDRYLVART-PDTLLLGDLH  197 (254)
Q Consensus       166 ~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~  197 (254)
                        -..|.+|.+|-|.+|++.++ |+.+++|-..
T Consensus       315 --Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  315 --MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             --hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence              13588999998888877555 6699999754

>KOG0650|consensus

Probab=99.44  E-value=1.2e-11  Score=111.95  Aligned_cols=163  Identities=17%  Similarity=0.205  Sum_probs=107.5

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCE--EEEEeCCcEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA--VVVGSYDNIKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~--la~gs~d~i~l~   77 (254)
                      +.+|++.|.+++-++  ..|++||.||++|||. .+|+|++++.      ....|.|++|+|.+..  ||++-...+-|-
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            468999999999887  4799999999999999 9999998875      2358999999998864  555443332122


Q ss_pred             EecCCC------------------------cceeecC--------ceecCCCCcEeEEEEecCCCeEEEeecCC---cEE
Q psy12788         78 AWSPSK------------------------SVWEEQP--------NKTIPNLYTISALSWKRDGSRIACGGLCG---SVE  122 (254)
Q Consensus        78 d~~~~~------------------------~~~~~~~--------~~~~~~~~~i~~l~~spdG~~la~g~~dg---~v~  122 (254)
                      +-.-+.                        -.|....        ...+.+..+|..|.|+.+|.|||+...++   .|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            110000                        0221100        01233456789999999999999887653   344


Q ss_pred             EEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        123 LFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       123 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      |.++.-++.+                            ..+ ...++.|+.+.|+|...++..++.+.++|+||..+.
T Consensus       550 iHQLSK~~sQ----------------------------~PF-~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe  598 (733)
T KOG0650|consen  550 IHQLSKRKSQ----------------------------SPF-RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE  598 (733)
T ss_pred             EEeccccccc----------------------------Cch-hhcCCceeEEEecCCCceEEEEeccceEEEehhHHH
Confidence            4443211111                            111 112456888899887777777788889999988653

>KOG2055|consensus

Probab=99.44  E-value=5.3e-12  Score=111.04  Aligned_cols=210  Identities=14%  Similarity=0.188  Sum_probs=134.1

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEeCCCC---EEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEec
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYESDGR---VHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~   80 (254)
                      ..+.++.|.|  ..|++||.|++++||.-+|+   .++.+..     ...+|.++.|+|+|+ .+++++... ...||+.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-----ccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            5799999998  47999999999999975553   3444422     236899999999999 677777666 6788875


Q ss_pred             CCCcc-------eeec--Ccee------------------------------cCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         81 PSKSV-------WEEQ--PNKT------------------------------IPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        81 ~~~~~-------~~~~--~~~~------------------------------~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      ..+-.       .++.  ...+                              +.-.+.|.+++|+.||+.|.+.+.+|.|
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceE
Confidence            32210       0000  0000                              0112368899999999999999999999


Q ss_pred             EEEeeeeeeeEee----c-------------eeEEEEecCCeEEEEeCCCCCc---eeeEEEEecCCCceeEEEEecCcE
Q psy12788        122 ELFESVLKRTIWK----G-------------KFEMIYVSPSQVLVKPLSGESK---GRGVILKSQYGYEITDVAIMGNDR  181 (254)
Q Consensus       122 ~iwd~~~~~~~~~----~-------------~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~~~i~~i~~~~~~~  181 (254)
                      .+||++...+++.    +             .|..+-+..+-|-|+|..+...   .+.+.--......|++++|+++.+
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            9999976654432    1             1222333334466776533210   011111111234689999999887


Q ss_pred             EEE-EEC--CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788        182 YLV-ART--PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       182 ~~v-~~~--d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      +++ |++  .+.+++.-+.+..+. -.|.++.++-.     ...||.|++
T Consensus       449 iLAiaS~~~knalrLVHvPS~TVF-sNfP~~n~~vg-----~vtc~aFSP  492 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHVPSCTVF-SNFPTSNTKVG-----HVTCMAFSP  492 (514)
T ss_pred             hhhhhhhccccceEEEeccceeee-ccCCCCCCccc-----ceEEEEecC
Confidence            654 554  679999988876653 24654433322     368999999

>KOG2394|consensus

Probab=99.43  E-value=2.7e-12  Score=114.80  Aligned_cols=124  Identities=19%  Similarity=0.333  Sum_probs=86.4

Q ss_pred             CCCEEEEecC---CeEEEEeCCCcEEEEeCC---------------CCEEEEee--ecC--C-----CCCCCCEEEEEEC
Q psy12788          8 VPPYALSWPA---GYILAAGSDRIVTIYESD---------------GRVHRIFD--YTA--P-----HYKEREFTVACSS   60 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~s~D~~i~vWd~~---------------g~~~~~~~--~~~--~-----~~~~~~v~~~a~s   60 (254)
                      ..|+++.|-+   ..++.+-.++.++++|..               |.......  ...  .     +--+..|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            6789999965   467777778899998621               11111110  000  0     0013467889999


Q ss_pred             CCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece
Q psy12788         61 PSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK  136 (254)
Q Consensus        61 Pdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~  136 (254)
                      |||++||+-|.|+ +||||+.......     ..+..-+...+|+|||||+||++|+.|--|.||....+|....++
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg-----~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLG-----VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHH-----HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence            9999999999997 8999986533110     011123478999999999999999999999999998888776543

>KOG1539|consensus

Probab=99.43  E-value=3.5e-11  Score=112.32  Aligned_cols=209  Identities=16%  Similarity=0.177  Sum_probs=134.6

Q ss_pred             CCEEEEecC------CeEEEE-eCCCcEEEEe-CCCCE-EEEeeec-CCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          9 PPYALSWPA------GYILAA-GSDRIVTIYE-SDGRV-HRIFDYT-APHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         9 ~v~~l~w~~------~~l~s~-s~D~~i~vWd-~~g~~-~~~~~~~-~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +|..+++..      +.++++ -.+..++.|+ .+.+. ...|+.. .+ ..+..+++++.++.|+....|+..+ |-+|
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~-~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK-KDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc-ccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence            466666654      234544 4567899999 44332 2222211 11 2346799999999999999998775 8899


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec-----eeEE----------EEe
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG-----KFEM----------IYV  142 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~-----~~~~----------~~~  142 (254)
                      +.+.+...-..  .....|..+|+.++.---++.+++++.+|.+..||...+.+...-     .-.+          ...
T Consensus       476 NmQSGi~r~sf--~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  476 NMQSGIHRKSF--GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EcccCeeeccc--ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence            86543321111  122457789999999888889999999999999997544332211     0111          122


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCce
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVT  221 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~  221 (254)
                      .+-.+++.|..+-.   .+.....++.+|+++.|||+++|++ ++-|++|++||+.++.+.+          .+.++.++
T Consensus       554 ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID----------~~~vd~~~  620 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID----------GLLVDSPC  620 (910)
T ss_pred             CceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee----------eEecCCcc
Confidence            34578888887642   1111234678999999999999865 7779999999999887532          23334445


Q ss_pred             EEEEEeC-CeeEE
Q psy12788        222 VCLVFNA-GELSI  233 (254)
Q Consensus       222 ~~~~~~~-g~~~~  233 (254)
                      +.+-+++ |+++.
T Consensus       621 ~sls~SPngD~LA  633 (910)
T KOG1539|consen  621 TSLSFSPNGDFLA  633 (910)
T ss_pred             eeeEECCCCCEEE
Confidence            5555555 55444

>KOG0321|consensus

Probab=99.43  E-value=5.3e-12  Score=114.81  Aligned_cols=194  Identities=10%  Similarity=0.052  Sum_probs=129.3

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe--CCCC--------EE-----------EEee---ecCCCCCCCCEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE--SDGR--------VH-----------RIFD---YTAPHYKEREFT   55 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd--~~g~--------~~-----------~~~~---~~~~~~~~~~v~   55 (254)
                      +.+|...|-+++|.+   ..+++|+.|+.|.|||  .++.        ++           +.+.   ...+ .+...|.
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti~  218 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-AASNTIF  218 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-cccCcee
Confidence            679999999999976   4799999999999999  3330        00           0000   0001 1233455


Q ss_pred             E---EEECCCCCEEEEEeC-Cc-EEEEEecCCCcceeecC--ceecC-C---CCcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788         56 V---ACSSPSGQAVVVGSY-DN-IKLFAWSPSKSVWEEQP--NKTIP-N---LYTISALSWKRDGSRIACGGLCGSVELF  124 (254)
Q Consensus        56 ~---~a~sPdg~~la~gs~-d~-i~l~d~~~~~~~~~~~~--~~~~~-~---~~~i~~l~~spdG~~la~g~~dg~v~iw  124 (254)
                      +   +.+..|...||+++. |+ +++||+...........  ....+ +   ...++++..-..|.+|.+.|.|+.|..|
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence            5   556678889999876 75 99999875444332211  11111 1   2357778877789999999999999999


Q ss_pred             eeeeeee----------E----------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EE
Q psy12788        125 ESVLKRT----------I----------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RY  182 (254)
Q Consensus       125 d~~~~~~----------~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~  182 (254)
                      ++..-..          +          .++.|.+..+++.+..+|-+.+..  ....+...+..+|+.+++.+.+  ..
T Consensus       299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v  376 (720)
T KOG0321|consen  299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPV  376 (720)
T ss_pred             eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCc
Confidence            9753211          0          123455556677888899887764  3333433444589999998754  67


Q ss_pred             EEEECCCcEEEEeccCC
Q psy12788        183 LVARTPDTLLLGDLHRN  199 (254)
Q Consensus       183 ~v~~~d~~i~i~dl~~~  199 (254)
                      ++++.|.+++||++..+
T Consensus       377 ~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  377 ATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeccCcceEEEeccCc
Confidence            88888889999999654

>KOG1063|consensus

Probab=99.42  E-value=7.7e-12  Score=114.67  Aligned_cols=205  Identities=15%  Similarity=0.173  Sum_probs=141.7

Q ss_pred             cccCCCCCEEEEecC----C-eEEEEeCCCcEEEEe--CCC--------------------CEEEEeee------cCCCC
Q psy12788          3 VVQHPVPPYALSWPA----G-YILAAGSDRIVTIYE--SDG--------------------RVHRIFDY------TAPHY   49 (254)
Q Consensus         3 l~~h~~~v~~l~w~~----~-~l~s~s~D~~i~vWd--~~g--------------------~~~~~~~~------~~~~~   49 (254)
                      |.||..-|.+|+|..    + +|+|+|+|+.||||.  ..+                    .....+.|      .+. |
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~-G  265 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM-G  265 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc-C
Confidence            679999999999964    2 699999999999996  222                    11212221      245 8


Q ss_pred             CCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeec-CceecCC-CCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         50 KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ-PNKTIPN-LYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        50 ~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~-~~~~~~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      |+++|+++-|+|.+..|.++|+|+ +.+|.-....+.|... +.-+..+ .......-|+|+++.+++-+..|..++|-.
T Consensus       266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT  345 (764)
T ss_pred             cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence            999999999999998899999995 7799877777788652 1222222 346899999999999999999999999962


Q ss_pred             eeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCceeeEe
Q psy12788        127 VLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~~~~  205 (254)
                      ...                  ..|..        ....+.+-..|++|++.|.+.| ++++.|+|-+|.---.++..   
T Consensus       346 ~d~------------------~~w~~--------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---  396 (764)
T KOG1063|consen  346 KDK------------------TFWTQ--------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---  396 (764)
T ss_pred             cCc------------------cceee--------ccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---
Confidence            110                  01111        1112233458999999998875 56889999988754433322   


Q ss_pred             CCC---CCCceeEEeeCceEEEEEeCCeeEEEEeecCeee
Q psy12788        206 WPD---SGRNEKFYFDNVTVCLVFNAGELSIIEYGNNEIL  242 (254)
Q Consensus       206 ~~~---~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  242 (254)
                      |++   |+.+     ..+..|+.+-.+.+.++.-++.-++
T Consensus       397 wHEiaRPQiH-----GyDl~c~~~vn~~~~FVSgAdEKVl  431 (764)
T KOG1063|consen  397 WHEIARPQIH-----GYDLTCLSFVNEDLQFVSGADEKVL  431 (764)
T ss_pred             eeeecccccc-----cccceeeehccCCceeeecccceee
Confidence            553   3322     3456777777666776666555444

>KOG1273|consensus

Probab=99.42  E-value=7.1e-12  Score=105.87  Aligned_cols=71  Identities=17%  Similarity=0.315  Sum_probs=60.5

Q ss_pred             EEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         54 FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      ..|+.|+|.|.+||+|+.|+ +.+||+.+..-.     ...-.|-.+|++++|||||+.|++++.|..|.+||+..+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence            78999999999999999996 889998765421     223456679999999999999999999999999998644

>KOG1538|consensus

Probab=99.41  E-value=6.4e-12  Score=114.97  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=114.6

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~   77 (254)
                      .|.+|...|++|+|+.+  +++||+.|+.|.+|+  .+|.+.    |    .|.+.|.|+.|+|-.+.||+++....-+|
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk----Y----SH~D~IQCMsFNP~~h~LasCsLsdFglW  119 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK----Y----SHNDAIQCMSFNPITHQLASCSLSDFGLW  119 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee----e----ccCCeeeEeecCchHHHhhhcchhhcccc
Confidence            47799999999999874  799999999999998  345433    5    58889999999999999999987765577


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      .-.  .+.     ........+|.+++|..||+++|.|-.+|+|.|-+..                           ++ 
T Consensus       120 S~~--qK~-----V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~---------------------------gE-  164 (1081)
T KOG1538|consen  120 SPE--QKS-----VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN---------------------------GE-  164 (1081)
T ss_pred             Chh--hhh-----HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC---------------------------CC-
Confidence            622  221     1122234589999999999999999999999775421                           10 


Q ss_pred             eeeEEEEe--cCCCceeEEEEecC------cEEEEEECCCcEEEEeccCCce
Q psy12788        158 GRGVILKS--QYGYEITDVAIMGN------DRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       158 ~~~~~l~s--~~~~~i~~i~~~~~------~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                       +.+.+..  ....+|.+|+++|.      +.+.|+...+|+.++.|....+
T Consensus       165 -ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I  215 (1081)
T KOG1538|consen  165 -EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI  215 (1081)
T ss_pred             -cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence             1122211  12357889998763      3467788889999998876554

>KOG0307|consensus

Probab=99.38  E-value=2.2e-12  Score=123.73  Aligned_cols=187  Identities=15%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             CCCEEEEecC---C---eEEEEeCCCcEEEEeCC----CCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EE
Q psy12788          8 VPPYALSWPA---G---YILAAGSDRIVTIYESD----GRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IK   75 (254)
Q Consensus         8 ~~v~~l~w~~---~---~l~s~s~D~~i~vWd~~----g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~   75 (254)
                      ..-+.|+|.+   +   .|+.|.+||+|.+||..    +.....+ .+.+ .|.+.|..+.|+|.+. +||+|+.|+ |.
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-a~~~-~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-ATKS-KHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-hhhc-ccCCceeeeeccccCCceeeccCCCCcEE
Confidence            4678899975   2   48888899999999922    3222222 2334 7999999999999765 999999886 88


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee-----ce-------------
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK-----GK-------------  136 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~-----~~-------------  136 (254)
                      |||++.-..-..   .-.......|.+|+|+.. ...||+++.+|.+.|||++-++.+.+     ++             
T Consensus       143 iWDlnn~~tP~~---~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  143 IWDLNKPETPFT---PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             EeccCCcCCCCC---CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence            999764222111   111223458999999886 55688999999999999875543321     10             


Q ss_pred             -eEEEEecCC---eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EE-EEEECCCcEEEEeccCCce
Q psy12788        137 -FEMIYVSPS---QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       137 -~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                       -.++.+.+.   -+.+||++...  ....+-..|.-.|.++.+.+.| .+ ++++.|+.+++|+.+++++
T Consensus       220 Tql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV  288 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence             112233222   47789987543  1222223444579999999877 54 5577899999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.4e-10  Score=105.96  Aligned_cols=158  Identities=15%  Similarity=0.239  Sum_probs=98.4

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-E
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i   74 (254)
                      +..|...+..++|+|+  .|+.++.+   .+|++|| .+|+.. .+. ... +   ....++|+|||+.|+.++ .++ .
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~-~~~-g---~~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVA-SFR-G---HNGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEe-cCC-C---ccCceeECCCCCEEEEEEecCCcE
Confidence            5677888999999985  68777654   3699999 555432 221 112 2   344689999999988865 454 6


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +||.++...+....    ...+...+.+.+|||||++|+..+ .+|..+||++...                        
T Consensus       273 ~Iy~~d~~~~~~~~----lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------------------------  324 (429)
T PRK01742        273 NIYVMGANGGTPSQ----LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------------------------  324 (429)
T ss_pred             EEEEEECCCCCeEe----eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------------------------
Confidence            78876543332211    122344678899999999887665 5788888875311                        


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .+   ....+ ...+   ...+++|++++++......+.+||+.+++.
T Consensus       325 ~~---~~~~l-~~~~---~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~  365 (429)
T PRK01742        325 GG---GASLV-GGRG---YSAQISADGKTLVMINGDNVVKQDLTSGST  365 (429)
T ss_pred             CC---CeEEe-cCCC---CCccCCCCCCEEEEEcCCCEEEEECCCCCe
Confidence            11   00111 1111   245677777766544445566688887764

>KOG1408|consensus

Probab=99.37  E-value=1.1e-11  Score=114.27  Aligned_cols=188  Identities=11%  Similarity=0.116  Sum_probs=138.8

Q ss_pred             cccCCCCCEEEEecC-----CeEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCC--CEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPA-----GYILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSG--QAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-----~~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg--~~la~gs~d~   73 (254)
                      +..|...|.+|.++.     .+||+||.|+-|.|+|  ++-.++++++     +|...|+++.|.-+|  ...++++.|+
T Consensus       497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-----~HSssITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-----GHSSSITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-----ccccceeEEEEeecCCceEEEeccCch
Confidence            457999999999984     3699999999999999  4556776665     899999999999877  4567788887


Q ss_pred             EEEEEecCCCccee-ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------------------
Q psy12788         74 IKLFAWSPSKSVWE-EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------------------  133 (254)
Q Consensus        74 i~l~d~~~~~~~~~-~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------------------  133 (254)
                      ...|+...+..... ..+....-....+++++.-|..+++++++.|..|+|||+..++...                   
T Consensus       572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP  651 (1080)
T KOG1408|consen  572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP  651 (1080)
T ss_pred             hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC
Confidence            43666433221111 1011111123579999999999999999999999999998765432                   


Q ss_pred             eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                      .+.|..+..++.++-++|..+|+   .+.--..|+..|+.+.|.++-+ ++.++.|+.|-||-+..
T Consensus       652 SgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  652 SGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            13456666778889999999884   3333334556799999998665 66788899999999873

>KOG0639|consensus

Probab=99.34  E-value=1.1e-11  Score=110.34  Aligned_cols=173  Identities=14%  Similarity=0.184  Sum_probs=119.2

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      ..++|+.+|+  ...++..|+.|+||| .+...++.|.     +|++.+.|+..++||..|=+|+.|. +|-||+...++
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----GhtDGascIdis~dGtklWTGGlDntvRcWDlregrq  585 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ  585 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----CCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence            4677888875  677888999999999 7777777775     8999999999999999999999995 99999764433


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-eeeEee----ceeEEEEecCC----------eEEE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-KRTIWK----GKFEMIYVSPS----------QVLV  149 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~~----~~~~~~~~~~~----------~~~v  149 (254)
                      ..      +..-...|.++..+|.|.++|+|-.++.|.+....- .|.+..    -...+.|..-+          -+-+
T Consensus       586 lq------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  586 LQ------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hh------hhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            21      111235799999999999999999999998876421 111110    01122232222          2334


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEec
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDL  196 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl  196 (254)
                      |...-|.    -+..+.-...|.+-.++.+++|+|.++ |+...++.+
T Consensus       660 wrtPyGa----siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGA----SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCcccc----ceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            4444442    223333345788888998899887554 667776654

>KOG4328|consensus

Probab=99.34  E-value=4.1e-11  Score=105.44  Aligned_cols=164  Identities=12%  Similarity=0.133  Sum_probs=114.3

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCcEEEEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDNIKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~i~l~d   78 (254)
                      +..|+.+|.++.|+|   +++++.|.||+||.=|-++.....+ +.++ .....+.++.|+-+...+..|. ++...+||
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v-~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV-LSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH-hhcC-ccceeeeeccccCCCccEEEeecccceEEEE
Confidence            457999999999998   4799999999999999444322222 4443 3445788899988776666654 44578999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      .+......+.    ..-|...|++|+++|-- .+||+++.|++++|||++.-+.... +           .+.++     
T Consensus       308 ~R~~~s~~~~----~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-p-----------~lst~-----  366 (498)
T KOG4328|consen  308 LRTDGSEYEN----LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-P-----------FLSTL-----  366 (498)
T ss_pred             eecCCccchh----hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-c-----------ceecc-----
Confidence            8765443221    12244589999999975 5699999999999999852111000 0           11111     


Q ss_pred             eeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEecc
Q psy12788        158 GRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~  197 (254)
                              .+...|.+.-|||.+ .+++.+.|+.|+|||..
T Consensus       367 --------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  367 --------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             --------cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence                    334578999999865 67778889999999984

>KOG4378|consensus

Probab=99.33  E-value=6.6e-11  Score=105.23  Aligned_cols=192  Identities=15%  Similarity=0.179  Sum_probs=128.2

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      -++++||..++|+||| +...+.+.+    + +|...|+++.++-...|||+++..+ +.|....+....-    ....+
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~l----k-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt----~f~~~  162 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFL----K-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT----TFTID  162 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhc----c-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc----ceecC
Confidence            4799999999999999 433344333    3 7999999999999999999999876 7787754433221    22233


Q ss_pred             CCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEee--c----e-----e------EEEEe-cCCeEEEEeCCCCC
Q psy12788         96 NLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIWK--G----K-----F------EMIYV-SPSQVLVKPLSGES  156 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~~--~----~-----~------~~~~~-~~~~~~v~~~~~~~  156 (254)
                      ....|.-+.|||.-+. |.+++.+|.|.+||+...+....  .    +     |      .+.-+ -|.++.++|..+..
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            3345778999998775 56788899999999865444321  1    1     1      11111 25577788887542


Q ss_pred             ceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCCe
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGE  230 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  230 (254)
                          ..-+--+.++...++|++++.|+++++ .+.++.+|++.-+-       | ...+-.++..+.|++|-...
T Consensus       243 ----s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-------P-v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  243 ----STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA-------P-VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ----ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC-------C-ceEeeecccceeEEEeeecc
Confidence                222223567899999999999888766 56888899997652       1 11222234456777777653

>KOG2048|consensus

Probab=99.33  E-value=8.8e-10  Score=101.09  Aligned_cols=184  Identities=12%  Similarity=0.083  Sum_probs=124.9

Q ss_pred             CCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCC
Q psy12788          7 PVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSK   83 (254)
Q Consensus         7 ~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~   83 (254)
                      +.+|.++|++.  +.||.+=.|+.|-||+ .++=.+...-+.   +.+..|-+++|++.|+++-+|....+.-||+...+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g---~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG---PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec---CCCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence            46789999986  4788888899999999 555333222121   33468999999988877755543457788875433


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec--------eeEEE----------EecCC
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG--------KFEMI----------YVSPS  145 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~--------~~~~~----------~~~~~  145 (254)
                      ....     .-...+.|.+++.+|-++.++.||.||.+..++...++..++.        .+.++          -+.|+
T Consensus       102 ~~~~-----~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  102 QKYN-----IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             eeEE-----ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence            3221     1123468999999999999999999997777766555444321        12222          33456


Q ss_pred             eEEEEeCCCCCceeeEEEE-ecC----C---CceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        146 QVLVKPLSGESKGRGVILK-SQY----G---YEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~-s~~----~---~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .+++||+.++.   .+.+. -..    .   .-|.++.|--++.++.|.+.+++.+||...+.+
T Consensus       177 ~Iriwd~~~~~---t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  177 VIRIWDVKSGQ---TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             eEEEEEcCCCc---eEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence            69999999884   33311 111    1   125677777667788888899999999988764

>KOG2139|consensus

Probab=99.32  E-value=2.1e-10  Score=98.64  Aligned_cols=169  Identities=16%  Similarity=0.212  Sum_probs=104.3

Q ss_pred             CCCEEEEecC---CeEEEEeCCCcEEEEe--CCCCEEE-----------EeeecCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          8 VPPYALSWPA---GYILAAGSDRIVTIYE--SDGRVHR-----------IFDYTAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~s~D~~i~vWd--~~g~~~~-----------~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      ..|.+++|-|   .-|+.|+.- -|.+|.  .+++.-+           .+.+  . +| .+|+++.|++||..+++++.
T Consensus       141 rnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~--p-gh-~pVtsmqwn~dgt~l~tAS~  215 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQD--P-GH-NPVTSMQWNEDGTILVTASF  215 (445)
T ss_pred             cceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeC--C-CC-ceeeEEEEcCCCCEEeeccc
Confidence            4689999988   346666554 599995  3332221           1111  1 44 68999999999999999998


Q ss_pred             C-c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee-eeeeeEeeceeEEEEecCCeE-
Q psy12788         72 D-N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES-VLKRTIWKGKFEMIYVSPSQV-  147 (254)
Q Consensus        72 d-~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~-  147 (254)
                      + . ++|||.+.+...-     ......+.++-+.|||||.+|.+++.|+.-++|.. .+....   ++   ..+.+.+ 
T Consensus       216 gsssi~iWdpdtg~~~p-----L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw---~lgsgrvq  284 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP-----LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RW---ILGSGRVQ  284 (445)
T ss_pred             CcceEEEEcCCCCCccc-----ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec---ce---eccCCcee
Confidence            7 3 8999977654421     11234567999999999999999999999999953 221110   00   0111111 


Q ss_pred             -EEEeCCCCCceeeEEEEecCCC-ceeEEEEecCcEE-E-EEECCCcEEEEecc
Q psy12788        148 -LVKPLSGESKGRGVILKSQYGY-EITDVAIMGNDRY-L-VARTPDTLLLGDLH  197 (254)
Q Consensus       148 -~v~~~~~~~~~~~~~l~s~~~~-~i~~i~~~~~~~~-~-v~~~d~~i~i~dl~  197 (254)
                       -+|+-  .   .+..|.+..+. .+.++.|.+++.. . +++.-.-+.|.||.
T Consensus       285 tacWsp--c---GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  285 TACWSP--C---GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             eeeecC--C---CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence             12322  2   22334333333 5778888765432 2 34444456677876

>KOG1007|consensus

Probab=99.32  E-value=3.2e-11  Score=100.89  Aligned_cols=158  Identities=12%  Similarity=0.096  Sum_probs=111.4

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCE-EEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCcEEEEEec
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRV-HRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDNIKLFAWS   80 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~-~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~i~l~d~~   80 (254)
                      -+.+.++.|.|+  .|++- .|..|.+|+ .++.. .+.+......++....++.+|||  ||+.+++.+...++.||..
T Consensus       123 vg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R  201 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR  201 (370)
T ss_pred             hCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence            347899999985  45554 488999999 44433 33333222114566799999999  8999999887779999987


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      +..+.|.    .+-.|-..|.++.|+|+-+ +||+|+.||.|+|||++.-+                            .
T Consensus       202 T~~~~~s----I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----------------------------~  249 (370)
T KOG1007|consen  202 TMKKNNS----IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----------------------------F  249 (370)
T ss_pred             chhhhcc----hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----------------------------c
Confidence            6555442    2344556899999999966 57889999999999985322                            1


Q ss_pred             eEEEEecCCCceeEEEEecC-c-EEEEEECCCcEEEEecc
Q psy12788        160 GVILKSQYGYEITDVAIMGN-D-RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~-~-~~~v~~~d~~i~i~dl~  197 (254)
                      .+.-...+.+.|-+|.|.|. + -++++++|..+.+|-..
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            12222345578888888863 3 35678888899888654

>KOG1007|consensus

Probab=99.30  E-value=8.2e-11  Score=98.51  Aligned_cols=169  Identities=11%  Similarity=0.162  Sum_probs=111.9

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCC-------CcEEEEe-CCC-CE--EEEee--ecCCCCCCCCEEEEEECCCCCEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSD-------RIVTIYE-SDG-RV--HRIFD--YTAPHYKEREFTVACSSPSGQAV   66 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D-------~~i~vWd-~~g-~~--~~~~~--~~~~~~~~~~v~~~a~sPdg~~l   66 (254)
                      |..|.+.|..++-+|   ..|+|+-.|       ..+.||. +.. +.  -.++.  ..++..+-+.|.|+.|.|++..+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            456788899999887   356666443       2478997 321 11  01111  11221234579999999999999


Q ss_pred             EEEeCCcEEEEEecCCCcceee-cCceecCCCCcEeEEEEec--CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEec
Q psy12788         67 VVGSYDNIKLFAWSPSKSVWEE-QPNKTIPNLYTISALSWKR--DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVS  143 (254)
Q Consensus        67 a~gs~d~i~l~d~~~~~~~~~~-~~~~~~~~~~~i~~l~~sp--dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~  143 (254)
                      |+-..+.+.+|+.......-.+ ......++....++-+|||  ||+.+|+.+ |++++.||+++.+..           
T Consensus       139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~-----------  206 (370)
T KOG1007|consen  139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN-----------  206 (370)
T ss_pred             EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh-----------
Confidence            8776557889998654442111 1111223445788999999  899998765 999999998754322           


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE--EEEECCCcEEEEeccCCc
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY--LVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~--~v~~~d~~i~i~dl~~~~  200 (254)
                                       ..+...+|+.|..+.|.|+-++  ++|+.|+.++|||.+.-+
T Consensus       207 -----------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  207 -----------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             -----------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence                             2333456788999999997653  456778899999988654

>KOG1188|consensus

Probab=99.30  E-value=6.5e-11  Score=100.93  Aligned_cols=167  Identities=12%  Similarity=0.183  Sum_probs=117.3

Q ss_pred             ccccCCCCCEEEEec----CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeC----
Q psy12788          2 RVVQHPVPPYALSWP----AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSY----   71 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~----~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~----   71 (254)
                      .+.+|+..+..+.|.    |+.+.+|+.||+||+|| +.-.....+.+.   +++ .+..+++.+-.++.+|.|..    
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---~~~~~~f~~ld~nck~~ii~~GtE~~~s  141 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT---QQSGTPFICLDLNCKKNIIACGTELTRS  141 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc---CCCCCcceEeeccCcCCeEEeccccccC
Confidence            345677777777773    46799999999999999 544444444443   333 57788888878899999853    


Q ss_pred             C-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEE
Q psy12788         72 D-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV  149 (254)
Q Consensus        72 d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v  149 (254)
                      | .+.+|||+..++.   .+...-.|..-||.|.|+|. -++|++|+.||-|.+||+.-.  ..+.+             
T Consensus       142 ~A~v~lwDvR~~qq~---l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d--~EeDa-------------  203 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQL---LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD--NEEDA-------------  203 (376)
T ss_pred             ceEEEEEEeccccch---hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC--cchhh-------------
Confidence            3 3779998654431   11223346778999999995 578999999999999997311  00000             


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCCc
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~~  200 (254)
                                 +.---.++..|..+.|.++.  ++.+-+...+..+|+++.+.
T Consensus       204 -----------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  204 -----------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             -----------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence                       00001235678899998877  77788889999999999887

>KOG2445|consensus

Probab=99.30  E-value=1.3e-10  Score=97.95  Aligned_cols=184  Identities=17%  Similarity=0.219  Sum_probs=116.2

Q ss_pred             cccCCCCCEEEEecCC----eEEEEeCCCcEEEEe-CCCCEEEEee--e-------cCCCCCCCCEEEEEECCC---CCE
Q psy12788          3 VVQHPVPPYALSWPAG----YILAAGSDRIVTIYE-SDGRVHRIFD--Y-------TAPHYKEREFTVACSSPS---GQA   65 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~----~l~s~s~D~~i~vWd-~~g~~~~~~~--~-------~~~~~~~~~v~~~a~sPd---g~~   65 (254)
                      |......|+.+.|.|.    .||+++.|+++|||+ .+---+....  +       ... .+..+..|+.|+|.   -++
T Consensus       108 l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~-~~~~~~~CvsWn~sr~~~p~  186 (361)
T KOG2445|consen  108 LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG-KNKQPCFCVSWNPSRMHEPL  186 (361)
T ss_pred             eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc-cccCcceEEeeccccccCce
Confidence            4456678999999984    599999999999998 4421111111  1       111 24456789999985   578


Q ss_pred             EEEEeCC------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecC----CCeEEEeecCCcEEEEeeeeeeeEeec
Q psy12788         66 VVVGSYD------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD----GSRIACGGLCGSVELFESVLKRTIWKG  135 (254)
Q Consensus        66 la~gs~d------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd----G~~la~g~~dg~v~iwd~~~~~~~~~~  135 (254)
                      ||+|+.+      ++.||..+...+.|... .....+..+|++|+|.|.    -.+||+++.|| |+||.+...+.....
T Consensus       187 iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv-a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~  264 (361)
T KOG2445|consen  187 IAVGSDEDAPHLNKVKIYEYNENGRKWLKV-AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE  264 (361)
T ss_pred             EEEEcccCCccccceEEEEecCCcceeeee-hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence            9999987      67899988777777542 112245679999999997    35799999999 999998643321100


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccC
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHR  198 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~  198 (254)
                      . +.  ..+.+  ..++.-    +.+...+.|..+|-.+.+.--+..+ ..+.|+.+++|-...
T Consensus       265 e-e~--~~~~~--~~~l~v----~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  265 E-EV--LAPDL--MTDLPV----EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             h-cc--cCCCC--ccccce----EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            0 00  00000  000100    1122223445577777776556544 466789999996543

>KOG0307|consensus

Probab=99.30  E-value=1.1e-11  Score=118.86  Aligned_cols=190  Identities=11%  Similarity=0.106  Sum_probs=130.5

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCC-cEE
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYD-NIK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d-~i~   75 (254)
                      +...|+++|..|.|++   +.||+|+.|+.|.||| .+-+.-  +.+... ....+|.+++|+.. ...||+++.+ ++.
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~~-~~~~eI~~lsWNrkvqhILAS~s~sg~~~  187 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGSQ-APPSEIKCLSWNRKVSHILASGSPSGRAV  187 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCCC-CCcccceEeccchhhhHHhhccCCCCCce
Confidence            3457999999999986   5899999999999999 332222  212111 24578999999976 4568888888 577


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCC-CeEEEeecCC---cEEEEeeeee-----eeEe-------------
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCG---SVELFESVLK-----RTIW-------------  133 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg---~v~iwd~~~~-----~~~~-------------  133 (254)
                      |||++.++....   .........+..|+|+||+ +.|++++.|.   .|.+||++.-     ....             
T Consensus       188 iWDlr~~~pii~---ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  188 IWDLRKKKPIIK---LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             eccccCCCcccc---cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence            999876544322   1122223458899999996 4677777654   5889996521     1111             


Q ss_pred             eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCCc
Q psy12788        134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~~  200 (254)
                      +..+.++.-.|+++++|+..+++   .+.--...+..+.++.|.|.+  .+.+++=|+.|-|+.+.+..
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            11344455567899999999984   222223346789999999866  45667779999999998764

>KOG1009|consensus

Probab=99.29  E-value=5.1e-10  Score=97.33  Aligned_cols=123  Identities=14%  Similarity=0.178  Sum_probs=95.0

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCC--------C-----CEEEEeeecCCCCCCCCEEEEEECCCCCEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESD--------G-----RVHRIFDYTAPHYKEREFTVACSSPSGQAV   66 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~--------g-----~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l   66 (254)
                      .|.+|...|..+-|+|+  .|+||+.++.|.+|-..        .     +........+. +|..+|+.++|+||+.++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCcee
Confidence            47789999999999985  89999999999999732        1     11111112233 788999999999999999


Q ss_pred             EEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         67 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        67 a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      ++|+.|. +++||+.....  .   ...-.|...+.-++|-|-++++++=+.|...+.+.+...+
T Consensus       139 ~s~s~dns~~l~Dv~~G~l--~---~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQL--L---AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             eeeeccceEEEEEecccee--E---eeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence            9999995 89999764322  1   2234566789999999999999999999988888765443

>KOG2106|consensus

Probab=99.28  E-value=2.3e-09  Score=95.70  Aligned_cols=111  Identities=12%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             CCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          7 PVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         7 ~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      ...|....|.|   +.|+++|. +.+.+|+ +.|...+....-.+ ....-|.|++|.|+|+. ++|..++ +.||+.. 
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek-~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~-  275 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEK-REKKFVLCVTFLENGDV-ITGDSGGNILIWSKG-  275 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccc-ccceEEEEEEEcCCCCE-EeecCCceEEEEeCC-
Confidence            34577889987   57888876 5799999 44444433322112 22367999999999985 4787775 7888842 


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                       .....   .....|.+.|.++..-.||++|- |+.|..|..||-
T Consensus       276 -~~~~~---k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~  315 (626)
T KOG2106|consen  276 -TNRIS---KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD  315 (626)
T ss_pred             -CceEE---eEeeecCCceEEEEEecCccEee-cCccceEEeccc
Confidence             22221   22237888999999999999876 999999999994

>KOG1445|consensus

Probab=99.28  E-value=4.9e-11  Score=108.75  Aligned_cols=120  Identities=13%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEe---eecCCCCCCCCEEEEEECCCCC-EEEEEeCCc
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIF---DYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~---~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~   73 (254)
                      .|.+|...|..+.|+|   .+|++||.|..|+||. ..|-.. .+   ..... +.+-.+-++.|||... ++++|....
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q-~LSape~~~g-~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ-KLSAPEIDVG-GGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc-ccCCcceeec-CCceEEEEeecccCcCceEEeccCce
Confidence            4678999999999998   3799999999999998 444211 11   01111 2334788999999654 566776667


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      +.|||+++++...+     ...|...|.+..||.||+.||+++.|+.|+|||-+.
T Consensus       152 v~i~D~stqk~~~e-----l~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  152 VYITDISTQKTAVE-----LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             EEEEEcccCceeec-----ccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            99999887665432     234667899999999999999999999999999753

>KOG0649|consensus

Probab=99.27  E-value=7.6e-10  Score=90.86  Aligned_cols=172  Identities=16%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CC-CC---EEEEe----eecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SD-GR---VHRIF----DYTAPHYKEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~-g~---~~~~~----~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      .+|..+++.++|..+.|++|+. +.|+=|. .+ .+   +...+    .++.+...--+|+++...|..+.+..++-|. 
T Consensus        59 qahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~  137 (325)
T KOG0649|consen   59 QAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV  137 (325)
T ss_pred             cccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE
Confidence            4799999999999888999875 8999886 21 11   11111    1111101123689999999877666666676 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +.-||+...+-.     .....|...|.++.-......+.+|+.||++|+||+.+++....                 +.
T Consensus       138 ~y~~dlE~G~i~-----r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-----------------ie  195 (325)
T KOG0649|consen  138 IYQVDLEDGRIQ-----REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-----------------IE  195 (325)
T ss_pred             EEEEEecCCEEE-----EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE-----------------ec
Confidence            666776543321     22345777899999855556788999999999999987664321                 11


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .-+  ....++++-|..|-+++.+  +.+++++.-..+.||.|++-...
T Consensus       196 ~yk--~~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrsse~t  240 (325)
T KOG0649|consen  196 PYK--NPNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRSSEST  240 (325)
T ss_pred             ccc--ChhhcCcccCceeEEEecc--CceEEecCCCceeEEeccCCCce
Confidence            100  2345666667778887765  67999988889999999987643

>KOG4328|consensus

Probab=99.25  E-value=3e-10  Score=100.11  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             cCCCCCEEEEecC----CeEEEEeCCCcEEEEeCC--CCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEE
Q psy12788          5 QHPVPPYALSWPA----GYILAAGSDRIVTIYESD--GRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKL   76 (254)
Q Consensus         5 ~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd~~--g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l   76 (254)
                      -|+.+|.+++|.|    .++|+|..-|+|-+||-.  +.-...+ |... +|..+|+++.|+|.. ..+.+.|+|+ +|+
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-YLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce-EEec-cCCccccceEecCCChhheeeeccCceeee
Confidence            4678899999998    367888888999999942  2111111 1112 788899999999965 4677888896 999


Q ss_pred             EEecCCCcceeecCceecCC-CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      -|++.  ...++  ...... ...+.++.|+.+...++.|..=|...+||.+++...+.                     
T Consensus       262 ~D~~~--~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~---------------------  316 (498)
T KOG4328|consen  262 QDFEG--NISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE---------------------  316 (498)
T ss_pred             eeecc--hhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch---------------------
Confidence            99753  22222  111111 23577889998888888888777888888765543211                     


Q ss_pred             CceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                             ....+...|..|++.|..  .+++|+.|+|++|||++.
T Consensus       317 -------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  317 -------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             -------hhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence                   111223478999999854  356788899999999984

>KOG0322|consensus

Probab=99.24  E-value=7.4e-11  Score=97.61  Aligned_cols=158  Identities=14%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             CCCEEEEecC----C-eEEEEeCCCcEEEEe-CCCCEEEEee------ecCCCCCCCCEEEEEECCCCCEEEEEeCC-cE
Q psy12788          8 VPPYALSWPA----G-YILAAGSDRIVTIYE-SDGRVHRIFD------YTAPHYKEREFTVACSSPSGQAVVVGSYD-NI   74 (254)
Q Consensus         8 ~~v~~l~w~~----~-~l~s~s~D~~i~vWd-~~g~~~~~~~------~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i   74 (254)
                      +.|.+..|..    . .|++|-+++.+.+|| .++..+-.|.      +... .|..+|.++.|.|.-..=++|+.+ ++
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccc
Confidence            4567777653    2 467777899999999 6653332221      2233 578899999999865555667765 56


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  154 (254)
                      ..|.++-..+..+.....++++ ..|..+...||++.+|+++-||.||+|..++.+.+                      
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL----------------------  286 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL----------------------  286 (323)
T ss_pred             eeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCch----------------------
Confidence            6888765544444322222333 35888999999999999999999999986544322                      


Q ss_pred             CCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEec
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDL  196 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl  196 (254)
                             .+-..|...|++++|+|+. -+++|+.|.+|-+|+|
T Consensus       287 -------AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 -------AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             -------hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                   2222345689999999984 4566888999999997

>KOG1963|consensus

Probab=99.23  E-value=1.7e-09  Score=101.65  Aligned_cols=210  Identities=16%  Similarity=0.234  Sum_probs=126.6

Q ss_pred             cccCCCCCEEEEecC-----CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCC-------------------------
Q psy12788          3 VVQHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE-------------------------   51 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-----~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~-------------------------   51 (254)
                      |.+|..++..+...+     .++.+++.||+|++|| .++.++++++.... .|.                         
T Consensus        53 l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~  131 (792)
T KOG1963|consen   53 LEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILT  131 (792)
T ss_pred             cccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeee
Confidence            568889999998875     3577999999999999 88888888863322 120                         


Q ss_pred             -----------------------------CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceee-cCceecCCCCcEe
Q psy12788         52 -----------------------------REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEE-QPNKTIPNLYTIS  101 (254)
Q Consensus        52 -----------------------------~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~-~~~~~~~~~~~i~  101 (254)
                                                   ..-.++.++|.|++.+..-...+.+|+.....  +.. .......|...++
T Consensus       132 ~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t  209 (792)
T KOG1963|consen  132 TFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNIT  209 (792)
T ss_pred             ecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccce
Confidence                                         00134455555555444444444555543322  111 0112233445689


Q ss_pred             EEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE
Q psy12788        102 ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR  181 (254)
Q Consensus       102 ~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~  181 (254)
                      +.++||.++++|+|..||.|.+|.---             ++        ..+    ....+.-.|-.+|++++|+.++.
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~-------------~~--------~~~----~t~t~lHWH~~~V~~L~fS~~G~  264 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFG-------------SS--------DDS----ETCTLLHWHHDEVNSLSFSSDGA  264 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccc-------------cc--------ccc----ccceEEEecccccceeEEecCCc
Confidence            999999999999999999999995310             00        001    11122223456899999999885


Q ss_pred             E-EEEECCCcEEEEeccCCceeeEeCCCCCCceeEEe----eCceEEEEEeCCeeEEEEeecCeeee
Q psy12788        182 Y-LVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYF----DNVTVCLVFNAGELSIIEYGNNEILT  243 (254)
Q Consensus       182 ~-~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~  243 (254)
                      | +.|+..+-+.+|.+++++ -++...  -|...-.+    +++..+++..+-.+.++.-.+.++.-
T Consensus       265 ~LlSGG~E~VLv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  265 YLLSGGREGVLVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             eEeecccceEEEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence            4 678889899999999876 222211  11111110    22344555555556666555555443

>KOG0322|consensus

Probab=99.23  E-value=2.8e-11  Score=100.06  Aligned_cols=115  Identities=16%  Similarity=0.320  Sum_probs=88.2

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEe---CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEE
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYE---SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd---~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~   77 (254)
                      ..|..+|.+|.+.+  +.=++|+.|..+.+|+   ..|.+.......++  ++ .|..+..-||++.+|++++| ++|+|
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk--np-Gv~gvrIRpD~KIlATAGWD~RiRVy  278 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK--NP-GVSGVRIRPDGKILATAGWDHRIRVY  278 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec--CC-CccceEEccCCcEEeecccCCcEEEE
Confidence            46899999999986  4556788888899997   23544322222222  33 48889999999999999999 59999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      .|.+....     .....|...|++++||||...+|+++.|+.|.+|++
T Consensus       279 swrtl~pL-----AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  279 SWRTLNPL-----AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeccCCch-----hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99764432     122346689999999999999999999999999985

>KOG1523|consensus

Probab=99.23  E-value=7e-10  Score=94.02  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=114.4

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      ..++++-||+++  +||.+-....|.||...|..+-..-+.+. .|...|+++.|+|.++.|++++.|+ -.+|..- ..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccC-CC
Confidence            578999999985  68888888889999854433212224555 7899999999999999999999995 7788742 45


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      ..|... ...+......++|.|+|.++.+|+|+....|.||-.+...               .   |=+ +..  -+.  
T Consensus        88 ~~Wkpt-lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------d---WWV-sKh--ikk--  143 (361)
T KOG1523|consen   88 GTWKPT-LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------D---WWV-SKH--IKK--  143 (361)
T ss_pred             Ceeccc-eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------------c---eeh-hhh--hCC--
Confidence            677653 3334455679999999999999999999999888643110               0   000 000  001  


Q ss_pred             EecCCCceeEEEEecCcEEEE-EECCCcEEEEec
Q psy12788        164 KSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDL  196 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl  196 (254)
                        -....|++++++|++.+++ +++|...++...
T Consensus       144 --PirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  144 --PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             --ccccceeeeeccCCcceecccccCcceeEEEE
Confidence              1235789999999887655 667888887753

>KOG0303|consensus

Probab=99.22  E-value=3.6e-10  Score=98.11  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=87.8

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      |.+|...|--++|.|   +.|+|+|.|.+|.+|| .+|+.+-++      .|++.|+++.|+-||.+|++.+.|+ +|||
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~  200 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVI  200 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec------CCCCeEEEEEeccCCceeeeecccceeEEE
Confidence            679999999999998   5799999999999999 889887443      4889999999999999999999995 9999


Q ss_pred             EecCCCcceeecCceecCCCC-cEeEEEEecCCCeEEEee---cCCcEEEEee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLY-TISALSWKRDGSRIACGG---LCGSVELFES  126 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~-~i~~l~~spdG~~la~g~---~dg~v~iwd~  126 (254)
                      |....+-..+.     ..|.+ .-..+-|=.+|..+-+|-   .+..+-+||.
T Consensus       201 dpr~~~~v~e~-----~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp  248 (472)
T KOG0303|consen  201 DPRRGTVVSEG-----VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDP  248 (472)
T ss_pred             cCCCCcEeeec-----ccccCCCcceeEEeccCceeeeccccccccceeccCc
Confidence            96543322211     23332 345677888999555553   3667888885

>KOG2055|consensus

Probab=99.22  E-value=1.6e-10  Score=101.83  Aligned_cols=161  Identities=18%  Similarity=0.203  Sum_probs=102.6

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      .+.|..+.|+.+  .|++++.++.|.+|| ....++..+.-  + +. -.-++++.|++|+|||+||.-+ +.|||.+..
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~-G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--D-GS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--c-Cc-cceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            456888999864  688888899999999 55577766641  1 21 1246788899999999999888 789996432


Q ss_pred             CcceeecCceecCC-CCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         83 KSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      ...-...+.+.+.+ ...|++|+|+||+++||.+|.  +..+++--+                 ++.-...++.+.+   
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----------------PS~TVFsNfP~~n---  479 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----------------PSCTVFSNFPTSN---  479 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----------------cceeeeccCCCCC---
Confidence            22111111122222 247999999999999998884  334444321                 1111111121111   


Q ss_pred             eEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEecc
Q psy12788        160 GVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLH  197 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~  197 (254)
                            ..=+-|++++|+|.+- +++|...+.+.+|-|.
T Consensus       480 ------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 ------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                  1124689999999665 4566678899999874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=7.4e-09  Score=94.56  Aligned_cols=162  Identities=16%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE-EeCCc-E
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~-gs~d~-i   74 (254)
                      +..+...+...+|+|+  .|+..+.+   ..|.+|| .+|+.. .+.     ..+..+.+.+|||||+.|+. .+.++ .
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~-----~~~g~~~~~~~SPDG~~la~~~~~~g~~  264 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVA-----NFKGSNSAPAWSPDGRTLAVALSRDGNS  264 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Eee-----cCCCCccceEECCCCCEEEEEEccCCCc
Confidence            4567788899999984  57766643   3599999 566543 221     22345678999999998875 45554 6


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +||.++...+....    ...+.......+|||||++|+..+. +|...||.+.                        +.
T Consensus       265 ~Iy~~d~~~~~~~~----lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~------------------------~~  316 (427)
T PRK02889        265 QIYTVNADGSGLRR----LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP------------------------AS  316 (427)
T ss_pred             eEEEEECCCCCcEE----CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE------------------------CC
Confidence            78876543332211    1112234567899999999887654 4667776542                        11


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCC---cEEEEeccCCcee
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPD---TLLLGDLHRNLLS  202 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~---~i~i~dl~~~~~~  202 (254)
                      ++.   ...+. ..+......+|+|++++++. +.++   .|.+||+.+++..
T Consensus       317 ~g~---~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        317 GGA---AQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             CCc---eEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            111   01111 11223345788888877653 3232   5899999887643

>KOG2110|consensus

Probab=99.21  E-value=4e-10  Score=97.02  Aligned_cols=114  Identities=18%  Similarity=0.267  Sum_probs=85.7

Q ss_pred             CCCCCEEEEecCC--eEEEEe--CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc--EEEEE
Q psy12788          6 HPVPPYALSWPAG--YILAAG--SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFA   78 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s--~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--i~l~d   78 (254)
                      |+..+.+++.++.  +|+--+  .-|.|.+|| .+-+....+.     .|.+++.+++|+|+|.+||++|..+  |||+.
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-----aH~~~lAalafs~~G~llATASeKGTVIRVf~  202 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-----AHKGPLAALAFSPDGTLLATASEKGTVIRVFS  202 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-----ecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence            4455666666553  566433  246799999 6666666665     7899999999999999999999885  79999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ...++...+.++...   ...|.+++||||+++|++.+..++|.+|-+.
T Consensus       203 v~~G~kl~eFRRG~~---~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  203 VPEGQKLYEFRRGTY---PVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             cCCccEeeeeeCCce---eeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            866555443321110   2379999999999999999999999999864

>KOG0771|consensus

Probab=99.21  E-value=5.7e-10  Score=97.32  Aligned_cols=145  Identities=12%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             EEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe
Q psy12788         55 TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus        55 ~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      .++||+++|..+|+|+.|+ +|+|+|-.....     ..+.+|..+|.++.|||||+.||+-+.| ..+||++.++....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh-----hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            5799999999999999996 999998543332     3346678899999999999999999999 99999998763221


Q ss_pred             -----ecee---EEEEecCC---eEEEEeCCCCCc---eeeEEEEec----------CCC-ceeEEEEecCcEEEE-EEC
Q psy12788        134 -----KGKF---EMIYVSPS---QVLVKPLSGESK---GRGVILKSQ----------YGY-EITDVAIMGNDRYLV-ART  187 (254)
Q Consensus       134 -----~~~~---~~~~~~~~---~~~v~~~~~~~~---~~~~~l~s~----------~~~-~i~~i~~~~~~~~~v-~~~  187 (254)
                           +..+   .+.|.-+.   .+++........   ...+.+++.          ... .|.+++++.+++|++ ++.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence                 1111   11232222   233332221110   000111110          122 688999999999876 556


Q ss_pred             CCcEEEEeccCCceeeEe
Q psy12788        188 PDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       188 d~~i~i~dl~~~~~~~~~  205 (254)
                      |+.+.|++..+-++..+.
T Consensus       302 dGsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             CCcEEEEEeceeeeeEee
Confidence            999999998876654443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.21  E-value=2e-08  Score=88.33  Aligned_cols=169  Identities=11%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             EEEEeCCCcEEEEe-C-CCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCcee
Q psy12788         20 ILAAGSDRIVTIYE-S-DGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~-~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~   93 (254)
                      .++.+.|+.|++|| . +|+  .++.+.      +......++++|+|++|.+++..  ++.+|+++. .+.+..  ...
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~--~~~   75 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-DGALTF--AAE   75 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-CCceEE--eee
Confidence            34557799999999 4 354  344432      22456788999999998777643  488898862 332322  112


Q ss_pred             cCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeee-e---eeEe---------------eceeEE-EEecCCeEEEEeC
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGL-CGSVELFESVL-K---RTIW---------------KGKFEM-IYVSPSQVLVKPL  152 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~-~---~~~~---------------~~~~~~-~~~~~~~~~v~~~  152 (254)
                      .........++|+|||++|++++. ++.|.+||+.. +   +...               ++++.+ ....++.+.+||+
T Consensus        76 ~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         76 SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            222234678999999999998875 88999998752 1   1111               011221 2223467888888


Q ss_pred             CCCCcee---eEEEEecCCCceeEEEEecCcEEE-EEEC-CCcEEEEecc
Q psy12788        153 SGESKGR---GVILKSQYGYEITDVAIMGNDRYL-VART-PDTLLLGDLH  197 (254)
Q Consensus       153 ~~~~~~~---~~~l~s~~~~~i~~i~~~~~~~~~-v~~~-d~~i~i~dl~  197 (254)
                      .+.+...   ........|.....++|+|+++++ ++.. ++++.+||+.
T Consensus       156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            6532000   011122235566789999988765 5544 7899999997

>KOG1240|consensus

Probab=99.20  E-value=1.3e-09  Score=105.59  Aligned_cols=198  Identities=14%  Similarity=0.154  Sum_probs=128.9

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-C--CCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-S--DGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~--~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      |-.|...|..++-++   ++++|||.||+||+|| .  .|+   ....+.|.   .....+.++..-+.|+++|+|+.|+
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys---~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS---PEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe---ccCCceEEEEeccCCCeEEEEcCCC
Confidence            445777888888764   4899999999999998 2  222   11122233   2346789999999999999999997


Q ss_pred             -EEEEEecCC--Cc-c-----------------------------------------eeec------CceecCCCCcEeE
Q psy12788         74 -IKLFAWSPS--KS-V-----------------------------------------WEEQ------PNKTIPNLYTISA  102 (254)
Q Consensus        74 -i~l~d~~~~--~~-~-----------------------------------------~~~~------~~~~~~~~~~i~~  102 (254)
                       +++.+++..  .. .                                         |...      +.+.....+.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence             777766430  00 0                                         0000      0000112357999


Q ss_pred             EEEecCCCeEEEeecCCcEEEEeeeeeeeEeece--------------------eEE--EEecCCeEEEEeCCCCCceee
Q psy12788        103 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK--------------------FEM--IYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus       103 l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~--------------------~~~--~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      ++.+|-+.+++.|+..|.+.+||++.+..+....                    ..+  ...+.+.+-+|++.+|.  ..
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--~~ 1278 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--RQ 1278 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--ce
Confidence            9999999999999999999999998765543211                    111  11245678889998885  55


Q ss_pred             EEEEecCCCc-------------------eeEEEEecCcEEEEEECCCcEEEEeccCCceeeEe
Q psy12788        161 VILKSQYGYE-------------------ITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       161 ~~l~s~~~~~-------------------i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~  205 (254)
                      .+++...+.+                   +.+.-..+++-.+++++|..|+.||..+.+.++.+
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccccc
Confidence            5555431111                   11111223345678999999999999988776533

>KOG0642|consensus

Probab=99.20  E-value=3.3e-10  Score=102.00  Aligned_cols=119  Identities=15%  Similarity=0.211  Sum_probs=89.9

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEeC-C------C--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYES-D------G--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~-~------g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      |.-|...+.+++|.+  ..|++|+.|+++++|+. .      +  +++-+|    . +|..+|-|++..++++.+-+|+.
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf----r-aH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF----R-AHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE----e-cccCceEEEEecCCceEEEeecc
Confidence            445777778888876  46999999999999973 1      1  344334    3 89999999999999999999999


Q ss_pred             Cc-EEEEEecCCCccee---e--cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         72 DN-IKLFAWSPSKSVWE---E--QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        72 d~-i~l~d~~~~~~~~~---~--~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      |+ ||.|++-.......   .  .......|...|..+++|+.-.+|++++.||+|++|+.
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            96 99996432111100   0  01123456678999999999999999999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.19  E-value=5.7e-09  Score=90.92  Aligned_cols=165  Identities=19%  Similarity=0.256  Sum_probs=113.3

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeC-CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGS-DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~   75 (254)
                      .+..|...|..++|+++  .+++++. |+.+++|+ ..+..+..+.     +|...+.+++|+|++. ++++++.|+ ++
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            35678999999999984  5777775 99999999 5566665554     6788999999999998 555547775 88


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      +||...... ..   .....+.... -..|+|++.++++++.|+.+++||.......                       
T Consensus       225 ~wd~~~~~~-~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------------------  276 (466)
T COG2319         225 LWDLSTGKL-LR---STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-----------------------  276 (466)
T ss_pred             EEECCCCcE-Ee---eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-----------------------
Confidence            997542111 10   0112233332 2289999999999999999999997533210                       


Q ss_pred             CceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCceeeE
Q psy12788        156 SKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       156 ~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                          ...+ ..+...|.++.+.|++ .+++++.|+.+.+||+.+......
T Consensus       277 ----~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         277 ----LRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             ----EEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence                0001 1224578888888844 455666777899999888765433

>KOG2919|consensus

Probab=99.19  E-value=1.3e-09  Score=92.62  Aligned_cols=187  Identities=14%  Similarity=0.195  Sum_probs=119.2

Q ss_pred             CCCEEEEecC---------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCC---EEEEEECCCCCEEEEEeCCcE
Q psy12788          8 VPPYALSWPA---------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKERE---FTVACSSPSGQAVVVGSYDNI   74 (254)
Q Consensus         8 ~~v~~l~w~~---------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~---v~~~a~sPdg~~la~gs~d~i   74 (254)
                      ..|+...|.+         +++++.+.|.-|++|| -+|+....+.  .- .|.++   ..+++|+|||.+|..|....|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--~y-dh~de~taAhsL~Fs~DGeqlfaGykrci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--AY-DHQDEYTAAHSLQFSPDGEQLFAGYKRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh--hh-hhHHhhhhheeEEecCCCCeEeecccceE
Confidence            4578888953         3688889999999999 7887765543  11 24443   458999999999987765569


Q ss_pred             EEEEecCCCcceeecCce---ecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEe------eceeEEE----
Q psy12788         75 KLFAWSPSKSVWEEQPNK---TIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIW------KGKFEMI----  140 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~---~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~----  140 (254)
                      |+||.....+........   +....+-|.+++|||-. +.+|+|+....+-|+.-.-+++..      .+...+.    
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence            999974222221111111   12224568889999965 599999999998888754444332      1111222    


Q ss_pred             ----Eec---CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe--cCcEEEEEE-CCCcEEEEeccC
Q psy12788        141 ----YVS---PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM--GNDRYLVAR-TPDTLLLGDLHR  198 (254)
Q Consensus       141 ----~~~---~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~--~~~~~~v~~-~d~~i~i~dl~~  198 (254)
                          |++   +..+..||++.-. ..-..|..+.+..-+.|-|.  |.+++++.+ +++.|.+||+..
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             cCeecccccCCCeEEEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence                222   4578899987542 01122222333355566664  567777755 899999999987

>KOG1310|consensus

Probab=99.19  E-value=7.2e-11  Score=106.12  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=117.5

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~   75 (254)
                      -|.||++-|.+|+|+.  .+|+|||.|-.+.||| ..-+++..+.    .+|...|.++.|-|  +..++++|..|+ |+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee----cccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4789999999999986  4899999999999999 4455664443    38999999999998  456788999996 99


Q ss_pred             EEEecCCCcceeecCce-----ecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeee-eEeeceeEEEEecCCeEE
Q psy12788         76 LFAWSPSKSVWEEQPNK-----TIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKR-TIWKGKFEMIYVSPSQVL  148 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~-----~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~  148 (254)
                      |+|++..++....-...     ..-|..+|..|+--|+| ..+-+++.||+++-+|++... +...+          .  
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~----------~--  188 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE----------D--  188 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc----------c--
Confidence            99987433221110011     11244578889999999 788999999999999975311 11000          0  


Q ss_pred             EEeCCCCCceeeEEEEecCC--CceeEEEEecCc--EEEEEECCCcEEEEecc
Q psy12788        149 VKPLSGESKGRGVILKSQYG--YEITDVAIMGND--RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       149 v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~  197 (254)
                                ....+....+  -+..++.++|..  .++|++++--++++|.+
T Consensus       189 ----------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  189 ----------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ----------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence                      0011111111  245678888865  45678888899999954

>KOG0270|consensus

Probab=99.18  E-value=9.2e-10  Score=96.66  Aligned_cols=157  Identities=18%  Similarity=0.264  Sum_probs=106.9

Q ss_pred             CCCCEEEEec---------CCeEEEEeCCCcEEEEeCC---C-CEEEEee--------------ecCCCCCCCCEEEEEE
Q psy12788          7 PVPPYALSWP---------AGYILAAGSDRIVTIYESD---G-RVHRIFD--------------YTAPHYKEREFTVACS   59 (254)
Q Consensus         7 ~~~v~~l~w~---------~~~l~s~s~D~~i~vWd~~---g-~~~~~~~--------------~~~~~~~~~~v~~~a~   59 (254)
                      +..|.|++|-         ++++|.|..|..|-|||.+   . .+.-+|.              +... +|...|-+++|
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~-gHTdavl~Ls~  251 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSAS-GHTDAVLALSW  251 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccc-cchHHHHHHHh
Confidence            3567889993         1689999999999999832   1 1111111              0112 47777788888


Q ss_pred             CCCC-CEEEEEeCCc-EEEEEecCCCcceeecCceecC-CCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEeec
Q psy12788         60 SPSG-QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWKG  135 (254)
Q Consensus        60 sPdg-~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~~  135 (254)
                      +-.- ..||+||.|+ +++||++..+..      ..++ |...|.+++|+|. ...|++|+.|++|.+.|++.-.     
T Consensus       252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-----  320 (463)
T KOG0270|consen  252 NRNFRNVLASGSADKTVKLWDVDTGKPK------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-----  320 (463)
T ss_pred             ccccceeEEecCCCceEEEEEcCCCCcc------eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-----
Confidence            8764 5789999995 999998765542      2334 4568999999996 7789999999999999975200     


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCC
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~  199 (254)
                                       ..+   .  ..  .+.+.|..+++.+..  .|+++..|++++-+|++..
T Consensus       321 -----------------~s~---~--~w--k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~  362 (463)
T KOG0270|consen  321 -----------------NSG---K--EW--KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP  362 (463)
T ss_pred             -----------------ccC---c--eE--EeccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence                             000   0  01  123467777776533  4666667889998898864

>KOG4378|consensus

Probab=99.18  E-value=1.9e-09  Score=96.16  Aligned_cols=170  Identities=10%  Similarity=0.138  Sum_probs=125.7

Q ss_pred             CccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeCCc-EE
Q psy12788          1 GRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYDN-IK   75 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d~-i~   75 (254)
                      ++|.+|...|.++.++.  .+||+++..|-|.|.. .++..-.+|.+    +....|.-+.|||..+. |.++++++ +.
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----DSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----CCCCeEEEeecccccceeeEeeccCCeEE
Confidence            46789999999999975  4899999999999998 66655545532    22234668999998875 55677777 89


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeee----Eeece-----------eEE
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRT----IWKGK-----------FEM  139 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~----~~~~~-----------~~~  139 (254)
                      |||.+......    .....|..+...|+|||.. .+|++-+.|+.|.+||...++.    .++.+           +++
T Consensus       191 lwDv~g~sp~~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  191 LWDVQGMSPIF----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLC  266 (673)
T ss_pred             EEeccCCCccc----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEE
Confidence            99976544332    1223466788899999975 5688899999999999876543    34333           344


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND  180 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~  180 (254)
                      .-.+.+.++.+|+....  ..+..++.|...|++|+|-+..
T Consensus       267 aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence            44556788999998765  6788888888889999998754

>KOG0649|consensus

Probab=99.18  E-value=3.5e-09  Score=87.02  Aligned_cols=160  Identities=13%  Similarity=0.158  Sum_probs=107.4

Q ss_pred             CEEEEecC--CeEEEEeCCCcEEEEe-C---C------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEE
Q psy12788         10 PYALSWPA--GYILAAGSDRIVTIYE-S---D------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLF   77 (254)
Q Consensus        10 v~~l~w~~--~~l~s~s~D~~i~vWd-~---~------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~   77 (254)
                      |.+-+|+|  ++|++|+.+++|.+.. .   +      |+. ..+  ... +|+.+|+.++|+  ..+|.+|+...++-|
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-~iv--~eq-ahdgpiy~~~f~--d~~Lls~gdG~V~gw   86 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-KIV--PEQ-AHDGPIYYLAFH--DDFLLSGGDGLVYGW   86 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc-cee--ecc-ccCCCeeeeeee--hhheeeccCceEEEe
Confidence            45557776  5899999999999985 1   1      221 111  113 799999999998  345677776559999


Q ss_pred             EecCCC------cceeecCceecC--CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEE
Q psy12788         78 AWSPSK------SVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV  149 (254)
Q Consensus        78 d~~~~~------~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v  149 (254)
                      .|+...      ..|+...+....  ....|+++..-|..+-+..++.|+.+..||+++++..      .+|.+|.    
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~------r~~rGHt----  156 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ------REYRGHT----  156 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE------EEEcCCc----
Confidence            996433      234322111111  1237999999998888888889999999998766543      2233332    


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEE-ecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAI-MGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~-~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                                         +-|.+++- +.+++.++++.|++++|||++++|...+
T Consensus       157 -------------------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  157 -------------------DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             -------------------ceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence                               22333333 3357899999999999999999986543

>KOG1408|consensus

Probab=99.17  E-value=2e-09  Score=99.65  Aligned_cols=188  Identities=13%  Similarity=0.170  Sum_probs=132.4

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC-CC--CCEEEEEeCCc-EEEEE
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS-PS--GQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s-Pd--g~~la~gs~d~-i~l~d   78 (254)
                      ....+.+++.+|+  .||+|-.-|++|||+ .+-+.+-.+    + .|+.+|.|+.|| |+  .++||+|+.|+ |.++|
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~----e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM----E-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe----e-cccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            3456888999985  799998899999999 444444222    3 799999999998 43  57899999998 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEeeee----ee------------eEee------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFESVL----KR------------TIWK------  134 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~~~----~~------------~~~~------  134 (254)
                      ...  + +... ...-+|...|++|.|--.|  ..+++++.|+.| +|+..-    ++            .+|+      
T Consensus       533 v~r--n-y~l~-qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  533 VKR--N-YDLV-QTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             ccc--c-cchh-hhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCC
Confidence            632  1 1110 1122467799999998888  788999999887 444321    11            1221      


Q ss_pred             ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCC--CceeEEEEecCcEEEEE-ECCCcEEEEeccCCceeeEe
Q psy12788        135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG--YEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~~~~v~-~~d~~i~i~dl~~~~~~~~~  205 (254)
                      .++.++...|.+++|+++.+++  +.-..+...+  +...++...|.+.|+++ ++|+++.++|..+|++..--
T Consensus       608 ~k~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             cceEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            2244556668899999999985  3333443333  45778888898888775 57899999999999876443

>KOG0290|consensus

Probab=99.16  E-value=5.3e-10  Score=93.77  Aligned_cols=162  Identities=10%  Similarity=0.161  Sum_probs=107.4

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCC--cEE
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYD--NIK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d--~i~   75 (254)
                      +|+.|.+.|+.++|..   +.+||+|.||.+|++|..-....++-|... ....+..-++|+++ -+++|+-.+|  .+.
T Consensus       191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-SPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-CCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            6889999999999976   589999999999999933222333335433 22457788999874 5678886666  377


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  154 (254)
                      +.|+..-....    .....|...|+.++|.|. ...|++++.|..+.|||+..--.                     ..
T Consensus       270 iLDiR~P~tpv----a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~---------------------~~  324 (364)
T KOG0290|consen  270 ILDIRVPCTPV----ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR---------------------EN  324 (364)
T ss_pred             EEEecCCCcce----ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc---------------------cC
Confidence            88864322111    122356789999999996 57899999999999999742100                     00


Q ss_pred             CCceeeEEEEecCCCceeEEEEec-CcEEEEEECCCcEE
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMG-NDRYLVARTPDTLL  192 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~~d~~i~  192 (254)
                      ..  ..++.-+ .++||+.|++++ +..++.....+++.
T Consensus       325 ~~--dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  325 GE--DPILAYT-AGGEVNQIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             CC--Cchhhhh-ccceeeeeeecccCCCEEEEEecCeee
Confidence            00  1111111 468999999985 34566555555544

>KOG1517|consensus

Probab=99.15  E-value=1.9e-09  Score=103.30  Aligned_cols=195  Identities=16%  Similarity=0.280  Sum_probs=129.8

Q ss_pred             EEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC-CCCCEEEEEeCCc-EEEEEecCCCcc
Q psy12788         11 YALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS-PSGQAVVVGSYDN-IKLFAWSPSKSV   85 (254)
Q Consensus        11 ~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s-Pdg~~la~gs~d~-i~l~d~~~~~~~   85 (254)
                      .-++|..  ..|+++|.-+.||||| ....+.+.+.+    +...-|++++-+ +.|+++|+|-.|+ +|+||.......
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----CCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence            4567864  3677777788999999 44455655543    334567777654 3479999999996 999996422110


Q ss_pred             eeecCceecCCCC--cEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         86 WEEQPNKTIPNLY--TISALSWKRDGSR-IACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        86 ~~~~~~~~~~~~~--~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                        ..-....+|..  +|..+.+.+.|-. |++|+.+|.|++||+++..   ...|                     ..+.
T Consensus      1245 --s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~---~e~~---------------------~~iv 1298 (1387)
T KOG1517|consen 1245 --SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS---KETF---------------------LTIV 1298 (1387)
T ss_pred             --ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc---cccc---------------------ceee
Confidence              00012234443  4999999998766 9999999999999986421   0000                     1122


Q ss_pred             EEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEE--eeCceEEEEEeCCe-eEEEEeecC
Q psy12788        163 LKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFY--FDNVTVCLVFNAGE-LSIIEYGNN  239 (254)
Q Consensus       163 l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~  239 (254)
                      ....+|...+.+.++.....+++++-+.|+|||+...++..++.+     +.|.  -.+...||.|.+-. +..+++.++
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n-----~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYN-----PGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccC-----cccccCcCCCcceeeecchhHhhhhccCCc
Confidence            223457778899999877777766669999999999888767654     2221  13456899999944 444665554


Q ss_pred             e
Q psy12788        240 E  240 (254)
Q Consensus       240 ~  240 (254)
                      -
T Consensus      1374 ~ 1374 (1387)
T KOG1517|consen 1374 T 1374 (1387)
T ss_pred             e
Confidence            3

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=3.1e-09  Score=97.12  Aligned_cols=89  Identities=17%  Similarity=0.229  Sum_probs=60.7

Q ss_pred             CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCcceeecCceecCCCCcEe
Q psy12788         26 DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWEEQPNKTIPNLYTIS  101 (254)
Q Consensus        26 D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~  101 (254)
                      +..|++||.+|...+.+.     .+...+.+.+|||||+.||..+.+    .+++||+.....  ..  ....  .....
T Consensus       183 ~~~i~i~d~dg~~~~~lt-----~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~--l~~~--~g~~~  251 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVN-----RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KV--VASF--RGHNG  251 (429)
T ss_pred             eEEEEEECCCCCCceEec-----cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EE--EecC--CCccC
Confidence            568999997776554443     456679999999999999987754    266777543221  11  1111  12345


Q ss_pred             EEEEecCCCeEEEee-cCCcEEEEe
Q psy12788        102 ALSWKRDGSRIACGG-LCGSVELFE  125 (254)
Q Consensus       102 ~l~~spdG~~la~g~-~dg~v~iwd  125 (254)
                      +++|||||++|+.++ .+|.+.||.
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEE
Confidence            789999999999875 688777764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.3e-08  Score=93.20  Aligned_cols=161  Identities=12%  Similarity=0.058  Sum_probs=94.6

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeC---CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE-EeCCc-
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGS---DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~---D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~-gs~d~-   73 (254)
                      ++..|...+...+|+|+  .|+..+.   +..|.+|| ..|+.. .+.     .+...+...+|||||+.|+. .+.++ 
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-----~~~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-----NFPGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-----cCCCcccCcEECCCCCEEEEEEecCCC
Confidence            35678889999999985  5776654   46799999 556543 332     34456778999999998764 44443 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  152 (254)
                      ..||.++...+....    ...+.......+|||||++|+..+. +|...||                        ++|+
T Consensus       270 ~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy------------------------~~d~  321 (435)
T PRK05137        270 TDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLY------------------------VMNA  321 (435)
T ss_pred             ceEEEEECCCCceEE----ccCCCCccCceeEcCCCCEEEEEECCCCCCeEE------------------------EEEC
Confidence            445544433332211    1122334567899999999987763 3332222                        2233


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECC---CcEEEEeccCCc
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHRNL  200 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d---~~i~i~dl~~~~  200 (254)
                      ..+.   ...+. ..+..+....++|++++++. ..+   ..+.++|+.++.
T Consensus       322 ~g~~---~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        322 DGSN---PRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             CCCC---eEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            2221   11111 11234556778888876553 222   257788886554

>KOG2111|consensus

Probab=99.11  E-value=1.1e-08  Score=86.85  Aligned_cols=159  Identities=12%  Similarity=0.214  Sum_probs=107.2

Q ss_pred             CCCCEEEEecCCeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEEEEecCC
Q psy12788          7 PVPPYALSWPAGYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l~d~~~~   82 (254)
                      ..+|.+|...++.|++. .+++|+||. . +-+.+..++..   ..+....++.=+-+..+||-=+.. + ++|-|+...
T Consensus        94 ~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   94 NSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            35677777777777776 457899998 4 55667666532   223444443333344456655555 4 888887543


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCc-EEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS-VELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGV  161 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (254)
                      +..   .+..-..|...|.+++.+.+|.++|++|..|+ |||||.++|..+.+                 +.-|      
T Consensus       170 ~~~---~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E-----------------~RRG------  223 (346)
T KOG2111|consen  170 KPN---APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE-----------------LRRG------  223 (346)
T ss_pred             CcC---CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee-----------------eecC------
Confidence            321   01223457889999999999999999999998 78899877665533                 1111      


Q ss_pred             EEEecCCCceeEEEEecCcEEEEEECCC-cEEEEeccCC
Q psy12788        162 ILKSQYGYEITDVAIMGNDRYLVARTPD-TLLLGDLHRN  199 (254)
Q Consensus       162 ~l~s~~~~~i~~i~~~~~~~~~v~~~d~-~i~i~dl~~~  199 (254)
                          --...|.+++|+|+..|+++++|. |+.|..|+..
T Consensus       224 ----~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  224 ----VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ----CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                112479999999999988877765 9999988753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.11  E-value=5.9e-08  Score=85.39  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=109.6

Q ss_pred             CCCEEEEecCC--eEEEEeC-CCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEec
Q psy12788          8 VPPYALSWPAG--YILAAGS-DRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~   80 (254)
                      ..+..++++|+  .|++++. ++.|.+|+ . +|....... ..  .+.....+++++|+|+++.+++.+  .+.+||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-II--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-ec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            45778999974  5666664 88999998 3 443221111 11  122345678999999998766543  49999986


Q ss_pred             CCCcceeec--CceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeee--eee--Ee--------------------
Q psy12788         81 PSKSVWEEQ--PNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVL--KRT--IW--------------------  133 (254)
Q Consensus        81 ~~~~~~~~~--~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~--~~~--~~--------------------  133 (254)
                      ... .....  .....+.......++|+|||+++++++. ++.|.+||+..  ++.  ..                    
T Consensus       157 ~~g-~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        157 DDG-HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCC-cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            522 11110  0011112234567999999999988887 99999999852  211  10                    


Q ss_pred             --eceeEEEE-ecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCcEEEE-EEC-CCcEEEEecc--CCce
Q psy12788        134 --KGKFEMIY-VSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGNDRYLV-ART-PDTLLLGDLH--RNLL  201 (254)
Q Consensus       134 --~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~~~~v-~~~-d~~i~i~dl~--~~~~  201 (254)
                        +++|..+. ..++.+.++++...+  ....+..  ..+.....+.++++++++. +.. ++++.+|++.  ++.+
T Consensus       236 ~pdg~~lyv~~~~~~~I~v~~i~~~~--~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        236 TPDGRHLYACDRTASLISVFSVSEDG--SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEeCCC--CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence              11122221 123456677765432  1222211  1233456789999887654 443 7799999764  4554

>KOG1538|consensus

Probab=99.09  E-value=1.4e-09  Score=100.04  Aligned_cols=104  Identities=13%  Similarity=0.201  Sum_probs=80.1

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      .|+.++|.|+  .|+.+. |..+.+|| .+|.+++++.     +|.+.|+++||+.||+.+|+|+.|+ +.+|.  .+..
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK-----gHKDtVycVAys~dGkrFASG~aDK~VI~W~--~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK-----GHKDTVYCVAYAKDGKRFASGSADKSVIIWT--SKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccc-----cccceEEEEEEccCCceeccCCCceeEEEec--cccc
Confidence            6889999885  444443 34699999 7899997765     8999999999999999999999997 66776  2221


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      .     .....|...|.+++|+|-...||+++..-. -+|..
T Consensus        86 G-----~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-glWS~  121 (1081)
T KOG1538|consen   86 G-----ILKYSHNDAIQCMSFNPITHQLASCSLSDF-GLWSP  121 (1081)
T ss_pred             c-----eeeeccCCeeeEeecCchHHHhhhcchhhc-cccCh
Confidence            1     334457778999999999999999886543 36654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=4.3e-08  Score=89.70  Aligned_cols=161  Identities=13%  Similarity=0.185  Sum_probs=95.4

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE-EeCCc-
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~-gs~d~-   73 (254)
                      ++..|...+...+|+|+  .|+..+.+   ..|++|| ..|+.. .+.     ..+....+.+|+|||+.|+. .+.++ 
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~-----~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVA-----SFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eec-----cCCCCccCceECCCCCEEEEEEeCCCC
Confidence            35567778899999984  67777643   3699999 555543 221     23344567899999998764 34442 


Q ss_pred             --EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEE
Q psy12788         74 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVK  150 (254)
Q Consensus        74 --i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  150 (254)
                        +.+||..  .+....    ...+.......+|||||++|+..+. +|...+|.+                        
T Consensus       272 ~~Iy~~d~~--~g~~~~----lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~------------------------  321 (433)
T PRK04922        272 PEIYVMDLG--SRQLTR----LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV------------------------  321 (433)
T ss_pred             ceEEEEECC--CCCeEE----CccCCCCccceEECCCCCEEEEEECCCCCceEEEE------------------------
Confidence              5555543  222111    1122234567899999999987763 445444432                        


Q ss_pred             eCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCC---cEEEEeccCCcee
Q psy12788        151 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPD---TLLLGDLHRNLLS  202 (254)
Q Consensus       151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~---~i~i~dl~~~~~~  202 (254)
                      ++.++.   ...+. ..+......+|+|++++++.. .++   .|.+||+.+++..
T Consensus       322 dl~~g~---~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        322 AASGGS---AERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ECCCCC---eEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            222221   11111 122334467899988766543 222   6889999888654

>KOG4227|consensus

Probab=99.07  E-value=6.4e-09  Score=90.48  Aligned_cols=164  Identities=10%  Similarity=0.059  Sum_probs=113.1

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEeCC-------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYESD-------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~-------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      .+.+|.+-|.++.|+.  +.|++||.|..+++|+-+       .++++...   . .|...|.|++|+-....|-+|..+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~---~-~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME---H-PHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc---C-ccccceEEEEEccCCeeEecCCCc
Confidence            4778999999999986  479999999999999721       23443222   1 455789999999988888899887


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEe
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKP  151 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  151 (254)
                      + +.+.|+.++....-   ..+..+.+.|+.+.-+|-.+.+|+.+.+|.|.+||.+.....                   
T Consensus       127 ~~VI~HDiEt~qsi~V---~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~-------------------  184 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYV---ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP-------------------  184 (609)
T ss_pred             ceeEeeecccceeeee---ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC-------------------
Confidence            5 77889765443221   111223458999999999999999999999999997532100                   


Q ss_pred             CCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        152 LSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       152 ~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                             ...++-..++..-.++-|.|..  -++++++.+..-+||.+.
T Consensus       185 -------~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  185 -------ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             -------CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence                   0111112233445566666643  245566677888888774

>KOG2919|consensus

Probab=99.07  E-value=4.6e-09  Score=89.34  Aligned_cols=169  Identities=15%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             CEEEEecCC--eEEEEeCCCcEEEEe--CCCCE---EEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCC-cEEEEEec
Q psy12788         10 PYALSWPAG--YILAAGSDRIVTIYE--SDGRV---HRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYD-NIKLFAWS   80 (254)
Q Consensus        10 v~~l~w~~~--~l~s~s~D~~i~vWd--~~g~~---~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d-~i~l~d~~   80 (254)
                      -.+|+|+|+  +|.+ |..++||++|  +.|+-   ..++..... +..+.+.+++|||- .+++|.|++. ++-|+.+.
T Consensus       161 AhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~-gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~  238 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKF-GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD  238 (406)
T ss_pred             heeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccc-cccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence            457899985  5554 5778999999  45642   222221111 34567899999995 4589999988 47777765


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeee-eeeEe-------------------eceeEE
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVL-KRTIW-------------------KGKFEM  139 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~-~~~~~-------------------~~~~~~  139 (254)
                      .+....     ....|.+.|+-+.|.+||+.|.+|.. |-.|..||++- +...+                   ++.++.
T Consensus       239 ~~~pl~-----llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La  313 (406)
T KOG2919|consen  239 GRRPLQ-----LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA  313 (406)
T ss_pred             CCCcee-----eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence            544321     23467789999999999999999985 67899999852 11111                   122333


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART  187 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~  187 (254)
                      +-..++-|.+||+..-.  ........+...++.|++.|-=.+++.++
T Consensus       314 sG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  314 SGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeecc
Confidence            33346679999998732  23344445567899999988533444333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=9.1e-08  Score=87.48  Aligned_cols=161  Identities=14%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeC---CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-eCCc--
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGS---DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-SYDN--   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~---D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s~d~--   73 (254)
                      +..+...+...+|+|+  .|+..+.   +..+.+|| ..|+.. .+.     .....+...+|||||+.|+.. +.++  
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~-----~~~~~~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-----SFPRHNGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ecc-----CCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence            4456667889999985  5665442   45789999 556533 221     122334568999999988865 3332  


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEe
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKP  151 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  151 (254)
                       +.+||..  .+....    ...+...+....|||||+.|+..+.+ |...||.+                        +
T Consensus       268 ~I~~~d~~--tg~~~~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~------------------------d  317 (429)
T PRK03629        268 NLYVMDLA--SGQIRQ----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV------------------------N  317 (429)
T ss_pred             EEEEEECC--CCCEEE----ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE------------------------E
Confidence             5555643  222211    11223457889999999999877754 45555532                        2


Q ss_pred             CCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECC---CcEEEEeccCCceee
Q psy12788        152 LSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHRNLLSE  203 (254)
Q Consensus       152 ~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d---~~i~i~dl~~~~~~~  203 (254)
                      +.++.   ...+. ..+.......|+|++++++. +.+   ..+.++|+.+++...
T Consensus       318 ~~~g~---~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        318 INGGA---PQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             CCCCC---eEEee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            22221   11111 12334556788998876543 332   357889999887543

>KOG1188|consensus

Probab=99.02  E-value=1.8e-08  Score=86.21  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=101.0

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EEEEEecCCCcceeecCceec
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      .+|++-..++|++|| .+|+.++.|.     +++..++.++|.-  .+..+.+++.|+ ||+||.+.+.+.-    ....
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~  112 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----RISW  112 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----heec
Confidence            477777889999999 6788887776     6777788888876  466788999996 9999987644321    1122


Q ss_pred             CC-C-CcEeEEEEecCCCeEEEeec----CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCC
Q psy12788         95 PN-L-YTISALSWKRDGSRIACGGL----CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYG  168 (254)
Q Consensus        95 ~~-~-~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  168 (254)
                      .+ . .+..+++-+-.++.+++|+.    +-.|.+||.+..+..                           ...+.-.|.
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------------l~~~~eSH~  165 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------------------LRQLNESHN  165 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch---------------------------hhhhhhhcc
Confidence            22 2 36677777778889998874    455666776432210                           011112345


Q ss_pred             CceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        169 YEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       169 ~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                      ..|+.|.|+|++  .+++|+.|+-+.|+|+..
T Consensus       166 DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  166 DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             CcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            689999999976  477889999999999873

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.98  E-value=4.4e-07  Score=79.00  Aligned_cols=163  Identities=16%  Similarity=0.276  Sum_probs=111.8

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEeC-CCC-EEEEeeecCCCCCC-CCEEEEEE-CCCCC-EEEEEeC-Cc-
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYES-DGR-VHRIFDYTAPHYKE-REFTVACS-SPSGQ-AVVVGSY-DN-   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~-~g~-~~~~~~~~~~~~~~-~~v~~~a~-sPdg~-~la~gs~-d~-   73 (254)
                      +..|...+..+.+.+  ..++.++.|+.+.+|+. .+. ....+.     .+. ..+..+.+ +|++. +++..+. |+ 
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  135 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE-----GLHDSSVSKLALSSPDGNSILLASSSLDGT  135 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEe-----ccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence            457888899999986  36888889999999994 443 454443     222 36777777 89998 4444343 64 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  152 (254)
                      +++|+........    .....|...|..++|+|+++++++++. ++.+++|+...++.                     
T Consensus       136 ~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  190 (466)
T COG2319         136 VKLWDLSTPGKLI----RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP---------------------  190 (466)
T ss_pred             EEEEEecCCCeEE----EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce---------------------
Confidence            8899975411111    223446678999999999999999986 99999999753211                     


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcE-EEEE-ECCCcEEEEeccCCceee
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDR-YLVA-RTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~-~~d~~i~i~dl~~~~~~~  203 (254)
                              ......+...|..+++++++. ++++ +.|+++.+||+..+.+..
T Consensus       191 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~  235 (466)
T COG2319         191 --------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR  235 (466)
T ss_pred             --------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence                    111112346788888887775 4554 678899999888666543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.92  E-value=5.2e-07  Score=80.85  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=100.4

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCC
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL   97 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~   97 (254)
                      +++-..+++|.|.| .+.+.+..+..     ....-..++|+|||+++.+.+.|+ +.++|+...+.      ...++.-
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------v~~i~~G   77 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------VATIKVG   77 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------EEEEE-S
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------EEEEecC
Confidence            34556789999999 77888887752     112235678999999998888885 88999654332      2233333


Q ss_pred             CcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee---c---------ee-EEEEec-----------CCeEEEEeC
Q psy12788         98 YTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK---G---------KF-EMIYVS-----------PSQVLVKPL  152 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~---~---------~~-~~~~~~-----------~~~~~v~~~  152 (254)
                      .....+++||||+++++++ ..+.+.++|..+.+.+..   +         +. .+..+.           -+++-+.|.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            4567899999999999887 589999999765443321   0         11 111112           234444454


Q ss_pred             CCCCceeeEEEE-ecCCCceeEEEEecCcEEE-EE-ECCCcEEEEeccCCcee
Q psy12788        153 SGESKGRGVILK-SQYGYEITDVAIMGNDRYL-VA-RTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       153 ~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~-v~-~~d~~i~i~dl~~~~~~  202 (254)
                      ....   ....+ -..+.-.....|+++++|+ ++ ..++.+-++|++++++.
T Consensus       158 ~d~~---~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  158 SDPK---NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             TTSS---CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             cccc---ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence            4432   12111 1234456678888888754 44 34778889999998764

...

>KOG1963|consensus

Probab=98.91  E-value=2.4e-07  Score=87.45  Aligned_cols=198  Identities=16%  Similarity=0.153  Sum_probs=119.7

Q ss_pred             CEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC-CCcc
Q psy12788         10 PYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP-SKSV   85 (254)
Q Consensus        10 v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~-~~~~   85 (254)
                      +..+..++. .+...-.+..+.+|+ ..+. .....+...-.|...+++.++||++.++|+|..|+ +.+|.-.. ....
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            445566553 344445567789998 4433 21111111104667789999999999999999885 88886211 1111


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS  165 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  165 (254)
                      ...  ....=|..+|++++||+||.+|.+|+..|.+.+|...+++..                              +-+
T Consensus       242 ~t~--t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------------------------------fLP  289 (792)
T KOG1963|consen  242 ETC--TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------------------------------FLP  289 (792)
T ss_pred             ccc--eEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc------------------------------ccc
Confidence            111  111225678999999999999999999999999976544311                              113


Q ss_pred             cCCCceeEEEEecCc-EEEEEECCCcEEEEec---cCCc-eeeEeCCCCC---Ccee----EEeeCceEEEEEeC--Cee
Q psy12788        166 QYGYEITDVAIMGND-RYLVARTPDTLLLGDL---HRNL-LSEVLWPDSG---RNEK----FYFDNVTVCLVFNA--GEL  231 (254)
Q Consensus       166 ~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl---~~~~-~~~~~~~~~~---g~~~----~~~~~~~~~~~~~~--g~~  231 (254)
                      ..|..|..+.++|++ .+.+...|+.|.+-.+   +-.. ++.+....+.   +.+.    +.++...-.+++++  |.+
T Consensus       290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v  369 (792)
T KOG1963|consen  290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV  369 (792)
T ss_pred             ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence            447889999999876 4667778988877644   3221 2333222111   1111    12333344455665  667


Q ss_pred             EEEEeecCe
Q psy12788        232 SIIEYGNNE  240 (254)
Q Consensus       232 ~~~~~~~~~  240 (254)
                      .++.+-.++
T Consensus       370 Q~ydl~td~  378 (792)
T KOG1963|consen  370 QFYDLYTDS  378 (792)
T ss_pred             EEEeccccc
Confidence            776666544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.91  E-value=5e-07  Score=81.86  Aligned_cols=161  Identities=15%  Similarity=0.147  Sum_probs=92.8

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-eCC-c
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-SYD-N   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s~d-~   73 (254)
                      ++..+...+...+|+|+  .|+.++.+   ..|++|| .+|+... +.     .+...+.+++|+|||+.|+.. +.+ .
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-----~~~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-----SFPGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee-----cCCCCccceEECCCCCEEEEEECCCCC
Confidence            35566667888999984  56666543   4799999 5665432 21     233456779999999987754 333 2


Q ss_pred             --EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEE
Q psy12788         74 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVK  150 (254)
Q Consensus        74 --i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  150 (254)
                        +.+|++.  .+....    ...+........|+|||++|+..+. .+...||.                        +
T Consensus       258 ~~i~~~d~~--~~~~~~----l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~------------------------~  307 (417)
T TIGR02800       258 PDIYVMDLD--GKQLTR----LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYM------------------------M  307 (417)
T ss_pred             ccEEEEECC--CCCEEE----CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEE------------------------E
Confidence              5555543  222211    1112233456799999999887664 33333332                        2


Q ss_pred             eCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCC---cEEEEeccCCcee
Q psy12788        151 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPD---TLLLGDLHRNLLS  202 (254)
Q Consensus       151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~---~i~i~dl~~~~~~  202 (254)
                      ++.++   ....+. ..+..+....++|++++++ +..+.   .+.++|+.++...
T Consensus       308 d~~~~---~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       308 DADGG---EVRRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             ECCCC---CEEEee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            22222   111111 1234556778888876554 44443   7888999887543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0650|consensus

Probab=98.90  E-value=4.5e-08  Score=89.14  Aligned_cols=180  Identities=19%  Similarity=0.228  Sum_probs=120.6

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l   76 (254)
                      .+.|...|..+.|..  ++|++..-|   ..|.|.+ .....+..|  .   ...+.|.++.|+|...+|.+++...+|+
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF--~---kskG~vq~v~FHPs~p~lfVaTq~~vRi  591 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF--R---KSKGLVQRVKFHPSKPYLFVATQRSVRI  591 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch--h---hcCCceeEEEecCCCceEEEEeccceEE
Confidence            357899999999985  789887664   4588888 333333222  2   2235799999999999999999888999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-----eeEe----------eceeE--E
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-----RTIW----------KGKFE--M  139 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-----~~~~----------~~~~~--~  139 (254)
                      ||+..+...     .+.+.+..-|.+++.+|.|..|++|+.|+.+..||+-..     ++++          ...|-  .
T Consensus       592 YdL~kqelv-----KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  592 YDLSKQELV-----KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             EehhHHHHH-----HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence            997642211     223344557999999999999999999999999997532     1111          12222  2


Q ss_pred             EEecCCeEEEE------eCCCCCceeeEEEEecCCCc------eeEEEEecCcEE-EEEECCCcEEEE
Q psy12788        140 IYVSPSQVLVK------PLSGESKGRGVILKSQYGYE------ITDVAIMGNDRY-LVARTPDTLLLG  194 (254)
Q Consensus       140 ~~~~~~~~~v~------~~~~~~~~~~~~l~s~~~~~------i~~i~~~~~~~~-~v~~~d~~i~i~  194 (254)
                      +.+.++.++|+      |+-.+.  -.+.+.-..|+.      |....|+|...| ++|+.|++|++|
T Consensus       667 s~sdDgtv~Vfhg~VY~Dl~qnp--liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  667 SGSDDGTVIVFHGMVYNDLLQNP--LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecCCCcEEEEeeeeehhhhcCC--ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            34455666655      332221  334444444443      567778887665 467889999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=2.8e-07  Score=84.38  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCcceeecCceecCCCCcEeE
Q psy12788         27 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWEEQPNKTIPNLYTISA  102 (254)
Q Consensus        27 ~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~  102 (254)
                      ..|.+||.+|...+.+.     .+...+.+.+|+|||+.||..+..    .+.+||.....  ...    .....+.+.+
T Consensus       182 ~~l~~~d~dg~~~~~lt-----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~----l~~~~g~~~~  250 (435)
T PRK05137        182 KRLAIMDQDGANVRYLT-----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--REL----VGNFPGMTFA  250 (435)
T ss_pred             eEEEEECCCCCCcEEEe-----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEE----eecCCCcccC
Confidence            36888887776555553     456689999999999999887643    26666654322  111    1122345678


Q ss_pred             EEEecCCCeEEE-eecCCc--EEEEeee
Q psy12788        103 LSWKRDGSRIAC-GGLCGS--VELFESV  127 (254)
Q Consensus       103 l~~spdG~~la~-g~~dg~--v~iwd~~  127 (254)
                      .+|||||+.|+. .+.+|.  |.+||+.
T Consensus       251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~  278 (435)
T PRK05137        251 PRFSPDGRKVVMSLSQGGNTDIYTMDLR  278 (435)
T ss_pred             cEECCCCCEEEEEEecCCCceEEEEECC
Confidence            999999998864 455555  4444543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=4e-07  Score=83.26  Aligned_cols=89  Identities=13%  Similarity=0.206  Sum_probs=55.5

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCcceeecCceecCCCCcEeEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWEEQPNKTIPNLYTISAL  103 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l  103 (254)
                      .|.+||.+|...+.+.     .+...+.+.+|||||+.||..+..    .+.++++....  ...  ...  ....+.++
T Consensus       180 ~l~~~d~dg~~~~~lt-----~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~--l~~--~~~~~~~~  248 (429)
T PRK03629        180 ELRVSDYDGYNQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQ--VAS--FPRHNGAP  248 (429)
T ss_pred             eEEEEcCCCCCCEEee-----cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEE--ccC--CCCCcCCe
Confidence            6888887665444442     344678999999999999876532    26666754322  111  111  12235578


Q ss_pred             EEecCCCeEEEe-ecCCc--EEEEeee
Q psy12788        104 SWKRDGSRIACG-GLCGS--VELFESV  127 (254)
Q Consensus       104 ~~spdG~~la~g-~~dg~--v~iwd~~  127 (254)
                      +|||||++||.. +.+|.  |.+||..
T Consensus       249 ~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        249 AFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            999999999865 33443  5556654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=3.6e-07  Score=83.52  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c---EEEEEecCCCcceeecCceecCCCCcEeE
Q psy12788         27 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N---IKLFAWSPSKSVWEEQPNKTIPNLYTISA  102 (254)
Q Consensus        27 ~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~---i~l~d~~~~~~~~~~~~~~~~~~~~~i~~  102 (254)
                      ..|.++|.+|...+.+.     .+...+.+.+|||||+.||..+.+ +   +.+||+.....  ..  .  ......+.+
T Consensus       176 ~~L~~~D~dG~~~~~l~-----~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~--l--~~~~g~~~~  244 (427)
T PRK02889        176 YQLQISDADGQNAQSAL-----SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RV--V--ANFKGSNSA  244 (427)
T ss_pred             cEEEEECCCCCCceEec-----cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EE--e--ecCCCCccc
Confidence            45777787776554442     355678899999999999987753 2   56666543221  11  1  112234668


Q ss_pred             EEEecCCCeEEE-eecCCcEEEEee
Q psy12788        103 LSWKRDGSRIAC-GGLCGSVELFES  126 (254)
Q Consensus       103 l~~spdG~~la~-g~~dg~v~iwd~  126 (254)
                      .+|||||+.||. .+.+|...||.+
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEE
Confidence            999999999875 567888777764

>KOG4497|consensus

Probab=98.85  E-value=3.7e-07  Score=78.18  Aligned_cols=117  Identities=15%  Similarity=0.296  Sum_probs=73.8

Q ss_pred             CCCCEEEEecCC---eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeC-C-c--EEEE-
Q psy12788          7 PVPPYALSWPAG---YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSY-D-N--IKLF-   77 (254)
Q Consensus         7 ~~~v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~-d-~--i~l~-   77 (254)
                      +.+.....|+|+   .|.+...|-.|-||..+.+...-+      +|+ ..+..++|+|||++.|..+. | .  +.+. 
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------cccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            456788999995   477778899999998433322112      222 35689999999999888763 2 1  2221 


Q ss_pred             --------------------EecCCCc---ceeecCceec-----CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         78 --------------------AWSPSKS---VWEEQPNKTI-----PNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        78 --------------------d~~~~~~---~~~~~~~~~~-----~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                                          .|++...   .|+.  ..+.     +-.-.+..++|||-+++||+|+.|+.+|+.+-.+.
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~--~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN--VLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecc--hhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence                                1111110   1110  0000     11125888999999999999999999999876554


Q ss_pred             ee
Q psy12788        130 RT  131 (254)
Q Consensus       130 ~~  131 (254)
                      +.
T Consensus       243 k~  244 (447)
T KOG4497|consen  243 KP  244 (447)
T ss_pred             ee
Confidence            43

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.6e-07  Score=84.58  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCcceeecCceecCCCCcEeE
Q psy12788         27 RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWEEQPNKTIPNLYTISA  102 (254)
Q Consensus        27 ~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~  102 (254)
                      .+|.+||.+|...+.+.     .+...+.+.+|+|||+.||..+.+    .+.+|++.....  ..  ..  .......+
T Consensus       184 ~~l~i~D~~g~~~~~lt-----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~--l~--~~~g~~~~  252 (433)
T PRK04922        184 YALQVADSDGYNPQTIL-----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--EL--VA--SFRGINGA  252 (433)
T ss_pred             EEEEEECCCCCCceEee-----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EE--ec--cCCCCccC
Confidence            36889997666554443     455678999999999999987744    266667543221  11  11  11233457


Q ss_pred             EEEecCCCeEEEe-ecCCc--EEEEeee
Q psy12788        103 LSWKRDGSRIACG-GLCGS--VELFESV  127 (254)
Q Consensus       103 l~~spdG~~la~g-~~dg~--v~iwd~~  127 (254)
                      ++|||||+.|+.. +.+|.  |.+||+.
T Consensus       253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        253 PSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             ceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            8999999988754 44553  6566654

>KOG0974|consensus

Probab=98.83  E-value=2.3e-08  Score=95.70  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             ccccCCCCCEEEEec--CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEE
Q psy12788          2 RVVQHPVPPYALSWP--AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~--~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~   77 (254)
                      ++.+|.+.+..+.|+  ..+|+++|+|+++|+|+ .+++....   ..- +|+..+..+.|+|+  .+++++.| ..|+|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---~~f-gHsaRvw~~~~~~n--~i~t~gedctcrvW  243 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC---TGF-GHSARVWACCFLPN--RIITVGEDCTCRVW  243 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc---ccc-cccceeEEEEeccc--eeEEeccceEEEEE
Confidence            478999999999995  46899999999999998 55554431   112 79999999999998  89999999 58999


Q ss_pred             EecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      +++.  ..|+.    -.+|. ..|..++..++...+.+++.||.+++||...
T Consensus       244 ~~~~--~~l~~----y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  244 GVNG--TQLEV----YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccc--ceehh----hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            8763  23332    12232 3699999999999999999999999999753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.7e-06  Score=77.70  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-eCCc-E
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-SYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s~d~-i   74 (254)
                      +..|...+...+|+|+  .|+..+.+   ..|.+|| .+|+.. .+.     .....+...+|||||+.|+.. +.++ .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~-----~~~g~~~~~~~SpDG~~la~~~~~~g~~  267 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT-----NFEGLNGAPAWSPDGSKLAFVLSKDGNP  267 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc-----CCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence            4567778899999984  57666543   3588889 556543 221     122345578999999988754 3332 3


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      .||-++...+....    ...+........|||||+.|+..+. +|...||.                        +++.
T Consensus       268 ~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~------------------------~d~~  319 (430)
T PRK00178        268 EIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK------------------------VNVN  319 (430)
T ss_pred             eEEEEECCCCCeEE----cccCCCCcCCeEECCCCCEEEEEECCCCCceEEE------------------------EECC
Confidence            34433332332211    1112234567899999998887653 34433332                        2222


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEEEC--CC--cEEEEeccCCcee
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVART--PD--TLLLGDLHRNLLS  202 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~--~i~i~dl~~~~~~  202 (254)
                      ++.   ...+. ..+.......++|++++++...  ++  .|.++|+.+++..
T Consensus       320 ~g~---~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~  368 (430)
T PRK00178        320 GGR---AERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR  368 (430)
T ss_pred             CCC---EEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence            221   11111 1112223456788777655332  22  4778899887653

>KOG2321|consensus

Probab=98.81  E-value=1.6e-07  Score=85.35  Aligned_cols=151  Identities=17%  Similarity=0.234  Sum_probs=100.0

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      ++++.|+ ...|+-.| ..|+-+..|.     ....++++|..+|--.+||+|..++ +..||-..+...-.......+.
T Consensus       147 Dly~~gs-g~evYRlNLEqGrfL~P~~-----~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~  220 (703)
T KOG2321|consen  147 DLYLVGS-GSEVYRLNLEQGRFLNPFE-----TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN  220 (703)
T ss_pred             cEEEeec-CcceEEEEccccccccccc-----cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC
Confidence            3444444 34566668 7888776654     2346899999999999999999886 8999965433211100011111


Q ss_pred             ------CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCC
Q psy12788         96 ------NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY  169 (254)
Q Consensus        96 ------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~  169 (254)
                            ....|++++|+-||-.+|+|+.+|.|.|||+++.+...                            +-.-.++.
T Consensus       221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----------------------------~kdh~~e~  272 (703)
T KOG2321|consen  221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----------------------------VKDHGYEL  272 (703)
T ss_pred             CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----------------------------ecccCCcc
Confidence                  12369999999999999999999999999987654331                            11112345


Q ss_pred             ceeEEEEecCc-E-EEEEECCCcEEEEeccCCcee
Q psy12788        170 EITDVAIMGND-R-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       170 ~i~~i~~~~~~-~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +|..+.|...+ + -++......++|||-.+|+..
T Consensus       273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM  307 (703)
T ss_pred             ceeeecccccCCCceEEecchHHhhhcccccCCce
Confidence            78888886432 2 344444558889999999853

>KOG1587|consensus

Probab=98.81  E-value=7.5e-07  Score=83.06  Aligned_cols=191  Identities=14%  Similarity=0.045  Sum_probs=117.4

Q ss_pred             CCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCE--EEEeeecCCCCCCCCEEEEEECCCC--CEEEEEeCCc-EEEE
Q psy12788          7 PVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSG--QAVVVGSYDN-IKLF   77 (254)
Q Consensus         7 ~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg--~~la~gs~d~-i~l~   77 (254)
                      ..+|.++.|+|   ++|+.|..+|+|.+|| +.+..  ...+..... .|..+++.+.|-.+-  .-|+++|.|+ +..|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~-sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV-SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccc-cCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            46788999876   5788899999999999 44432  222222223 688899999997654  3488988895 8899


Q ss_pred             EecCCCcceee--cCcee-----cCCCCcEeEEEEecC-CCeEEEeecCCcEEEEe---eeeee-eEeec----------
Q psy12788         78 AWSPSKSVWEE--QPNKT-----IPNLYTISALSWKRD-GSRIACGGLCGSVELFE---SVLKR-TIWKG----------  135 (254)
Q Consensus        78 d~~~~~~~~~~--~~~~~-----~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd---~~~~~-~~~~~----------  135 (254)
                      +.+....--+.  .....     ......+++++|.|- -..+++|+..|.|.-=+   ..... ..+++          
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            76432210000  00011     112247899999884 56788999999885522   11111 00111          


Q ss_pred             -------ee---EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCCc
Q psy12788        136 -------KF---EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       136 -------~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~~  200 (254)
                             +|   .+..++|-.+++|.-....  ..+...-..-..++++++||--  .|+++..++.+-||||....
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence                   11   1223457788898766321  2222222222349999999843  57788889999999998543

>KOG1310|consensus

Probab=98.80  E-value=2e-08  Score=90.68  Aligned_cols=127  Identities=13%  Similarity=0.029  Sum_probs=91.0

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEec--CCCeEEEeecCCcEEEEe
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR--DGSRIACGGLCGSVELFE  125 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dG~~la~g~~dg~v~iwd  125 (254)
                      ||++-|++++|+.||.+||+||.| ++.|||.-..+.  ..  .....|...|.++.|=|  ..+++++|..|..|++||
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lh--sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LH--SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcce--ee--eeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            899999999999999999999999 588999642221  11  33456778999999988  467899999999999999


Q ss_pred             eeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccC
Q psy12788        126 SVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~  198 (254)
                      +..-+-...        .|        ...   ....+.+.+-.+|..|+..|++  .|++|+.|++++=+|++.
T Consensus       124 l~~~~~~~~--------d~--------~~~---~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  124 LDSSKEGGM--------DH--------GME---ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ccccccccc--------cc--------Ccc---chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            742111000        00        000   1122233444577788877655  689999999999999985

>KOG2394|consensus

Probab=98.80  E-value=1.3e-08  Score=91.53  Aligned_cols=89  Identities=13%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      ..|...+|+|+  +||+.|.|+.+||+| .+.+++..++     .--+...||+|||||+|||+|+.|- +.||.+..++
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-----SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----hhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            46778888885  799999999999999 3333332221     1224689999999999999999886 7899875433


Q ss_pred             cceeecCceecCCCCcEeEEEEe
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWK  106 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~s  106 (254)
                      -.     ..-..|..-|+.|+|-
T Consensus       366 VV-----ARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  366 VV-----ARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EE-----EeccccccceeeEeec
Confidence            11     1122344455555554

>KOG0974|consensus

Probab=98.79  E-value=6.1e-08  Score=92.91  Aligned_cols=143  Identities=15%  Similarity=0.096  Sum_probs=105.7

Q ss_pred             eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCC
Q psy12788         19 YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL   97 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~   97 (254)
                      ++++|+.=+.|.+|+..+....   ..+. +|++.|.++.|+-||.++|+.|+|+ +|+|++......    ....+.|.
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p---~~l~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~----~~~~fgHs  218 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKP---IRLK-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL----GCTGFGHS  218 (967)
T ss_pred             EEEeccccccEEEEeccccCCc---ceec-ccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc----Cccccccc
Confidence            6899999999999983332221   1234 8999999999999999999999996 999998764432    13456788


Q ss_pred             CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe
Q psy12788         98 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM  177 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~  177 (254)
                      .+|..+.|.|.  +|++++.|-+.++|+..-..+                             .+...+.+.-|..+++.
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l-----------------------------~~y~~h~g~~iw~~~~~  267 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL-----------------------------EVYDEHSGKGIWKIAVP  267 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEeccccee-----------------------------hhhhhhhhcceeEEEEc
Confidence            89999999999  999999999999996421110                             01112334567777777


Q ss_pred             cCcE-EEEEECCCcEEEEeccCCc
Q psy12788        178 GNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       178 ~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      .... .++++.|+++++||+....
T Consensus       268 ~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  268 IGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             CCceEEEeeccCcchhhhhhhccc
Confidence            6544 4567889999999987654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=3e-06  Score=77.92  Aligned_cols=161  Identities=13%  Similarity=0.157  Sum_probs=88.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeC-CC--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-eCCc-E
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGS-DR--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-SYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~-D~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s~d~-i   74 (254)
                      +..+...+....|+|+  .|+..+. ++  .|.+|| ..|+.. .+.     ..+......+|+|||+.||.. +.++ .
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt-----~~~g~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVT-----SFPGINGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Eec-----CCCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence            3455667788999985  5665544 33  478888 455532 221     112234578999999988764 4443 4


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      .||.++...+....    ...+.......+|||||++|+..+. +|...+|-                        +++.
T Consensus       287 ~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~------------------------~dl~  338 (448)
T PRK04792        287 EIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYR------------------------VNLA  338 (448)
T ss_pred             EEEEEECCCCCeEE----CccCCCCccceEECCCCCEEEEEECCCCCceEEE------------------------EECC
Confidence            45554433332221    1112234577899999999887653 34444442                        2333


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEEE-C-CC--cEEEEeccCCce
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-T-PD--TLLLGDLHRNLL  201 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~-d~--~i~i~dl~~~~~  201 (254)
                      ++.   ...+. ..+......+++|++++++.. . ++  .|.+.|+.+++.
T Consensus       339 ~g~---~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        339 SGK---VSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCC---EEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            331   11111 112233456788888665432 2 33  455568888764

>KOG2111|consensus

Probab=98.77  E-value=8.7e-08  Score=81.42  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             CCcEEEEe-CCCCE--EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc--EEEEEecCCCcceeecCceecCCCCcE
Q psy12788         26 DRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTI  100 (254)
Q Consensus        26 D~~i~vWd-~~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--i~l~d~~~~~~~~~~~~~~~~~~~~~i  100 (254)
                      -|.|+|-| ..-+.  ...+.     .|+..|.|++.+-+|.++|++|..+  |||||-..+....+..   .=.....|
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R---RG~d~A~i  229 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR---RGVDRADI  229 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee---cCCchheE
Confidence            36788877 22211  12222     6899999999999999999999885  8999955444322211   00123479


Q ss_pred             eEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788        101 SALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus       101 ~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      .+|+||||+++||++|..|++.||.++.
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999999999999999999999998753

>KOG3881|consensus

Probab=98.75  E-value=4.9e-07  Score=78.72  Aligned_cols=183  Identities=15%  Similarity=0.159  Sum_probs=119.5

Q ss_pred             CCCEEEEecCCeEEEEeCCCcEEEEe-CCC----CEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeCC--c-EEEEE
Q psy12788          8 VPPYALSWPAGYILAAGSDRIVTIYE-SDG----RVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYD--N-IKLFA   78 (254)
Q Consensus         8 ~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d--~-i~l~d   78 (254)
                      .+|..++-....|++|-.+|.+.+|. +.+    ..+..+.      ....+..+.-+|.-.+ +|+|+..  . +++||
T Consensus       106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA------TGPGLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             ccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeee------cCCceeeeccCCCCCceEecCchhcccceeeee
Confidence            34444444445799999999999997 533    2222221      1135666777776554 5668866  3 79999


Q ss_pred             ecCCCcceeecCceecCCCC-------cEeEEEEecC--CCeEEEeecCCcEEEEeeeeeee-Eee--------------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLY-------TISALSWKRD--GSRIACGGLCGSVELFESVLKRT-IWK--------------  134 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-------~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~-~~~--------------  134 (254)
                      .....+.|+.   +..++..       -++++.|-|.  ...+|+++.-+.|++||.+.+|. ...              
T Consensus       180 le~~~qiw~a---KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  180 LEQSKQIWSA---KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             cccceeeeec---cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            9887888863   2333321       4788999888  89999999999999999986543 221              


Q ss_pred             --ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCce
Q psy12788        135 --GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       135 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~  201 (254)
                        +.|.++.-..+++-.+|+..+.  ..........+.|.+|..+|..++++ ++-|+-++|.|+.++++
T Consensus       257 p~gn~Iy~gn~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             CCCcEEEEecccchhheecccCce--eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence              2222222234456667777652  11110112335799999999877654 67799999999999764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.75  E-value=3.8e-05  Score=68.25  Aligned_cols=194  Identities=16%  Similarity=0.166  Sum_probs=110.9

Q ss_pred             CCCEEEEecC--CeEEEEe-CCCcEEEEe--CCCCEEEE---eeec-----CCCCCCCCEEEEEECCCCCEEEEEe--CC
Q psy12788          8 VPPYALSWPA--GYILAAG-SDRIVTIYE--SDGRVHRI---FDYT-----APHYKEREFTVACSSPSGQAVVVGS--YD   72 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s-~D~~i~vWd--~~g~~~~~---~~~~-----~~~~~~~~v~~~a~sPdg~~la~gs--~d   72 (254)
                      ..+..++.++  ++|+++. .+++|.+++  .+|.+...   +.+.     ..........++.|+|||+++.+..  .|
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            4556788876  3566665 488999998  44654333   2110     0001224578899999999988865  45


Q ss_pred             cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee--eeeeEe-----------e---c
Q psy12788         73 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV--LKRTIW-----------K---G  135 (254)
Q Consensus        73 ~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~--~~~~~~-----------~---~  135 (254)
                      +|++|+++.....+........+.-.....+.|+|||+++.+.+ .++.|.++++.  .+++..           .   .
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            79999987655433321122233344678899999999987665 47779998876  222110           0   1


Q ss_pred             eeEEEE-----------ecCCeEEEEeCC--CCCceeeEEEEecCCCceeEEEEecCcEEEE-EEC-CCcEEEEec--cC
Q psy12788        136 KFEMIY-----------VSPSQVLVKPLS--GESKGRGVILKSQYGYEITDVAIMGNDRYLV-ART-PDTLLLGDL--HR  198 (254)
Q Consensus       136 ~~~~~~-----------~~~~~~~v~~~~--~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~-d~~i~i~dl--~~  198 (254)
                      ...+.+           ..++.+.++++.  ++.- ..+......|...+.++++++++++. +.. +++|.++++  ++
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            112222           234567777773  2320 11111122355578999999887654 543 568888855  56


Q ss_pred             Ccee
Q psy12788        199 NLLS  202 (254)
Q Consensus       199 ~~~~  202 (254)
                      |++.
T Consensus       326 G~l~  329 (345)
T PF10282_consen  326 GKLT  329 (345)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            7654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=2.7e-06  Score=77.85  Aligned_cols=165  Identities=10%  Similarity=0.038  Sum_probs=87.6

Q ss_pred             cccCCCCCEEEEecCC--e--EE-EEeCCCc--EEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---
Q psy12788          3 VVQHPVPPYALSWPAG--Y--IL-AAGSDRI--VTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---   72 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~--l~-s~s~D~~--i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---   72 (254)
                      |.........-+|+|+  .  ++ +...++.  |.+.+..|...+.+.     ..+......+|||||+.||..+..   
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-----~~~g~~~~p~wSPDG~~Laf~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-----ALQGNQLMPTFSPRKKLLAFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-----cCCCCccceEECCCCCEEEEEECCCCC
Confidence            4444556677799986  3  32 4434444  555574332222222     122345568999999998875521   


Q ss_pred             -cEEE--EEecCCCcceeecCceecCC-CCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeE
Q psy12788         73 -NIKL--FAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQV  147 (254)
Q Consensus        73 -~i~l--~d~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  147 (254)
                       .+.+  |+....... ..  ...... .......+|||||++|+..+ .+|..++|.+.                    
T Consensus       255 ~di~~~~~~~~~g~~g-~~--~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~--------------------  311 (428)
T PRK01029        255 PDLFIQSFSLETGAIG-KP--RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ--------------------  311 (428)
T ss_pred             cceeEEEeecccCCCC-cc--eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE--------------------
Confidence             2333  443321100 00  011111 12346789999999988766 46666666431                    


Q ss_pred             EEEeCCC-CCceeeEEEEecCCCceeEEEEecCcEEEEE-ECC---CcEEEEeccCCcee
Q psy12788        148 LVKPLSG-ESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHRNLLS  202 (254)
Q Consensus       148 ~v~~~~~-~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d---~~i~i~dl~~~~~~  202 (254)
                          +.. ++  ....+. ..+..+....++|++++++. +.+   ..|.++|+.+++..
T Consensus       312 ----~~~~g~--~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        312 ----IDPEGQ--SPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             ----Cccccc--ceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence                110 00  111121 11235567889998876553 322   36889999988654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=1.4e-06  Score=79.65  Aligned_cols=164  Identities=13%  Similarity=0.158  Sum_probs=89.7

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeC-----CCcEEEEe-CC---CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGS-----DRIVTIYE-SD---GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~-----D~~i~vWd-~~---g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      +...+......+|+|+  .|+..+.     |-.+.+|+ ..   |+..+...     ++.......+|+|||+.|+..+.
T Consensus       226 lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-----~~~~~~~~p~wSPDG~~Laf~s~  300 (428)
T PRK01029        226 ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-----EAFGTQGNPSFSPDGTRLVFVSN  300 (428)
T ss_pred             eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-----CCCCCcCCeEECCCCCEEEEEEC
Confidence            3344555667889985  5554432     32344477 33   23222221     22223456799999999887663


Q ss_pred             -Cc-EEEEEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeecCC---cEEEEeeeeeeeEeeceeEEEEecCC
Q psy12788         72 -DN-IKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCG---SVELFESVLKRTIWKGKFEMIYVSPS  145 (254)
Q Consensus        72 -d~-i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~  145 (254)
                       ++ .+||.+......-.   ...+ .....+....|||||++||..+.++   .|.+|                     
T Consensus       301 ~~g~~~ly~~~~~~~g~~---~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~---------------------  356 (428)
T PRK01029        301 KDGRPRIYIMQIDPEGQS---PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVY---------------------  356 (428)
T ss_pred             CCCCceEEEEECcccccc---eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEE---------------------
Confidence             33 56776543211000   1111 1223567889999999999776432   24444                     


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-EC---CCcEEEEeccCCceeeE
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RT---PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~---d~~i~i~dl~~~~~~~~  204 (254)
                           |+.++.   ...+... ...+....++|++++++. ..   ...+.++|+.+++...+
T Consensus       357 -----dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        357 -----DLATGR---DYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             -----ECCCCC---eEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence                 444442   2222211 234567888988875542 22   34677889888775444

>KOG1334|consensus

Probab=98.73  E-value=9e-08  Score=85.37  Aligned_cols=207  Identities=13%  Similarity=0.089  Sum_probs=135.8

Q ss_pred             CccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-E
Q psy12788          1 GRVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-I   74 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-i   74 (254)
                      +||..|.+-|..|.|+.  +.|+|+|.|.+|.+|| ..+.....|.   . +|...|....|-|.  -+.+++.+.|+ +
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---S-GHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---c-ccccchhhhhccCCCCCcCceeccccCce
Confidence            47889999999999986  6899999999999999 7777664443   2 78888888889885  35688888886 7


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      |+=.+.....  .+.....-+|.++|.-++.-|+..+ +.+++.|+.+.-+|++.++....  +.            ...
T Consensus       212 r~s~i~~t~~--~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--~~------------cr~  275 (559)
T KOG1334|consen  212 RVSEILETGY--VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--FV------------CRE  275 (559)
T ss_pred             eeeeeccccc--eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--ee------------eec
Confidence            7655433221  1212344567789999999998654 78899999999999764432211  00            000


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEeccCCce-------eeEeCCCCCCceeEEeeCceEEE
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDLHRNLL-------SEVLWPDSGRNEKFYFDNVTVCL  224 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~  224 (254)
                      ..   .+.      .-....|++.|..  .|+|++.|.-++++|.+.-.-       .....+    +-.....-.++|+
T Consensus       276 ~~---~~~------~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~----hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  276 AD---EKE------RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH----HLVEDDPVNITGL  342 (559)
T ss_pred             cC---Ccc------ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc----cccccCcccceeE
Confidence            00   000      0134466666643  578899999999999764221       111111    1111233468999


Q ss_pred             EEeC-CeeEEEEeecCe
Q psy12788        225 VFNA-GELSIIEYGNNE  240 (254)
Q Consensus       225 ~~~~-g~~~~~~~~~~~  240 (254)
                      +++. +.-+|+-|.+.-
T Consensus       343 ~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  343 VYSHDGSELLASYNDED  359 (559)
T ss_pred             EecCCccceeeeecccc
Confidence            9994 666777777543

>KOG1517|consensus

Probab=98.72  E-value=1.1e-06  Score=84.80  Aligned_cols=189  Identities=15%  Similarity=0.222  Sum_probs=119.3

Q ss_pred             CCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EEEEEec
Q psy12788          7 PVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         7 ~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~l~d~~   80 (254)
                      ..++..+.+.|  +.|+++..-..|+||| +.++++..|+...  .....|+.+.+--  |-.++.+|+.|+ ||||+--
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            34566677776  4677776566899999 8899988776322  2345788888743  456788999997 8999732


Q ss_pred             CCCcceeecC-------c-eecCCC-CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------------
Q psy12788         81 PSKSVWEEQP-------N-KTIPNL-YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------------  134 (254)
Q Consensus        81 ~~~~~~~~~~-------~-~~~~~~-~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------------  134 (254)
                        ...|....       . -..+.. +.=.-+.|....-+|.+++....|+|||+.......+                 
T Consensus      1142 --~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1142 --ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             --ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence              11111100       0 000111 1113368888766777777799999999753333221                 


Q ss_pred             -ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCc--eeEEEEecCc--EEEEEECCCcEEEEeccCC
Q psy12788        135 -GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYE--ITDVAIMGND--RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       135 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~--i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~  199 (254)
                       +...+.-..|+.++++|.........+.....+...  |..+.+-+++  .++.+++++.|.+||+++.
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence             122233446788899998765421234444444444  8888876543  6888999999999999983

>KOG1587|consensus

Probab=98.68  E-value=1e-07  Score=88.72  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~   75 (254)
                      ...|.++|+++.++|   ..+++++ |-++|||. . ...++    +..+ .+...+++++|||.-. .||++..|+ +.
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl----~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL----LSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             ccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc----hhhh-hccceeeeeEEcCcCceEEEEEcCCCcee
Confidence            346889999999998   4566766 88999998 3 44555    3333 4566799999999754 577787776 89


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +||+......  .. ..........+.+.|+++|+.||+|...|++.+|++.
T Consensus       468 iWDLl~~~~~--Pv-~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  468 IWDLLQDDEE--PV-LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhhhhccccC--Cc-ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9997543321  10 1112224467788999999999999999999999973

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=5.4e-06  Score=75.71  Aligned_cols=90  Identities=17%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--c--EEEEEecCCCcceeecCceecCCCCcEeEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N--IKLFAWSPSKSVWEEQPNKTIPNLYTISAL  103 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~--i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l  103 (254)
                      .|.++|.+|...+.+.     .+...+...+|||||+.||..+.+  +  +.+|++..  +....  .  ....+.+...
T Consensus       180 ~l~~~d~~g~~~~~l~-----~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~--l--~~~~g~~~~~  248 (430)
T PRK00178        180 TLQRSDYDGARAVTLL-----QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQ--I--TNFEGLNGAP  248 (430)
T ss_pred             EEEEECCCCCCceEEe-----cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--CCEEE--c--cCCCCCcCCe
Confidence            3667786675444442     344678999999999999887644  2  44555432  22111  1  1112345578


Q ss_pred             EEecCCCeEEEe-ecCC--cEEEEeeee
Q psy12788        104 SWKRDGSRIACG-GLCG--SVELFESVL  128 (254)
Q Consensus       104 ~~spdG~~la~g-~~dg--~v~iwd~~~  128 (254)
                      +|||||++|+.. +.+|  .|.++|+.+
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~  276 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLAS  276 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCC
Confidence            999999998854 4455  355556543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=1.1e-05  Score=74.37  Aligned_cols=87  Identities=18%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCceecCCCCcEeEEEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSW  105 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~  105 (254)
                      .+.++|.+|...+.+.     .+...+.+.+|||||+.||..+.+  +.+||-++...+....  ....  .....+.+|
T Consensus       199 ~l~i~d~dG~~~~~l~-----~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~--~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYNEQMLL-----RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSF--PGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCCceEee-----cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCC--CCCcCCeeE
Confidence            5666786665444332     344578899999999999877643  2344444332221111  1111  223457899


Q ss_pred             ecCCCeEEEe-ecCCcEEE
Q psy12788        106 KRDGSRIACG-GLCGSVEL  123 (254)
Q Consensus       106 spdG~~la~g-~~dg~v~i  123 (254)
                      ||||+.||.. +.+|...|
T Consensus       270 SPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEE
Confidence            9999988764 55665333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.61  E-value=1.4e-07  Score=56.06  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788         37 RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus        37 ~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      ++++++.     +|...|++++|+|++++||+|+.|+ +++||
T Consensus         2 ~~~~~~~-----~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR-----GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-----SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc-----CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4666665     8999999999999999999999996 89997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0642|consensus

Probab=98.61  E-value=5.3e-07  Score=81.67  Aligned_cols=130  Identities=11%  Similarity=0.103  Sum_probs=92.6

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe--CCC-----CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE--SDG-----RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd--~~g-----~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      +.+|..+|.|++..+  ..+.+||.|++|+.|+  .++     .-...+...+. ||.+.+..+++|+..+.|+++|.|+
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~Dg  418 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDG  418 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCc
Confidence            568999999999986  4799999999999994  121     11112222334 8999999999999999999999995


Q ss_pred             -EEEEEecCCCc-cee----ec----------C-----------------------ceec-----CCC---CcEeEEEEe
Q psy12788         74 -IKLFAWSPSKS-VWE----EQ----------P-----------------------NKTI-----PNL---YTISALSWK  106 (254)
Q Consensus        74 -i~l~d~~~~~~-~~~----~~----------~-----------------------~~~~-----~~~---~~i~~l~~s  106 (254)
                       +|+|+...... ...    ..          +                       ...+     +..   ..+.-+.++
T Consensus       419 Tvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~  498 (577)
T KOG0642|consen  419 TVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH  498 (577)
T ss_pred             eEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence             89998532221 000    00          0                       0000     011   247778999


Q ss_pred             cCCCeEEEeecCCcEEEEeeeeeeeEe
Q psy12788        107 RDGSRIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus       107 pdG~~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      |.+.+..++..|+.|+++|..+++.+.
T Consensus       499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  499 PTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             CCCCeeEecccCCceecccccccccch
Confidence            999999999999999999988776654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.61  E-value=6.5e-06  Score=74.54  Aligned_cols=89  Identities=17%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCcceeecCceecCCCCcEeEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWEEQPNKTIPNLYTISAL  103 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l  103 (254)
                      .|.++|.+|...+.+.     .+...+.+.+|+|||++||..+.+    .+++|+......  ..    .......+.++
T Consensus       171 ~l~~~d~~g~~~~~l~-----~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~----~~~~~~~~~~~  239 (417)
T TIGR02800       171 ELQVADYDGANPQTIT-----RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EK----VASFPGMNGAP  239 (417)
T ss_pred             eEEEEcCCCCCCEEee-----cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EE----eecCCCCccce
Confidence            5777786665444442     344568899999999999987643    266777543221  11    11123456679


Q ss_pred             EEecCCCeEEEe-ecCCc--EEEEeee
Q psy12788        104 SWKRDGSRIACG-GLCGS--VELFESV  127 (254)
Q Consensus       104 ~~spdG~~la~g-~~dg~--v~iwd~~  127 (254)
                      +|+|||+.|+.. +.++.  |.+||..
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECC
Confidence            999999988754 44443  5555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354|consensus

Probab=98.60  E-value=6.5e-07  Score=77.03  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             CCCEEEEecC----CeEEEEeCCCcEEEEe-C-CC-CE------------------EEEee-------e-----cCCCCC
Q psy12788          8 VPPYALSWPA----GYILAAGSDRIVTIYE-S-DG-RV------------------HRIFD-------Y-----TAPHYK   50 (254)
Q Consensus         8 ~~v~~l~w~~----~~l~s~s~D~~i~vWd-~-~g-~~------------------~~~~~-------~-----~~~~~~   50 (254)
                      ..|..+.|-+    ..++....|++|++|. . .+ +.                  +..+.       +     -.. .|
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN-aH  163 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN-AH  163 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc-cc
Confidence            4577888864    2466667899999996 2 11 11                  00000       0     012 57


Q ss_pred             CCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCC-----CcEeEEEEecC-CCeEEEeecCCcEEEE
Q psy12788         51 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNL-----YTISALSWKRD-GSRIACGGLCGSVELF  124 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~-----~~i~~l~~spd-G~~la~g~~dg~v~iw  124 (254)
                      +..|++++++.|++.+.++..-+|.||.+....+.+..  .--+++.     .-|++..|+|. .+.++-.+..|+|++-
T Consensus       164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnI--VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNI--VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             eeEeeeeeecCccceEeeccceeeeeccccccCCceeE--EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            88999999999999999876558999997654544432  1111221     35899999996 6788899999999999


Q ss_pred             eeeeeeeE--eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        125 ESVLKRTI--WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       125 d~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      |++...+-  ....|+-    +        ..+   ......+..=..|..|.|+.+++|+.+..--+++|||+.
T Consensus       242 DmR~~aLCd~hsKlfEe----p--------edp---~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~n  301 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEE----P--------EDP---SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLN  301 (433)
T ss_pred             echhhhhhcchhhhhcc----c--------cCC---cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecc
Confidence            98522110  0011110    0        000   000000001125778999999999999998999999984

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.60  E-value=2.1e-05  Score=78.20  Aligned_cols=137  Identities=17%  Similarity=0.261  Sum_probs=85.6

Q ss_pred             CCCCCEEEEecCC--eEEEEeC----C--CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC--Cc--
Q psy12788          6 HPVPPYALSWPAG--YILAAGS----D--RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--DN--   73 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~----D--~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~--d~--   73 (254)
                      +...-..++|-+|  ++|+.+.    +  +.+|||+++|.+..+-+     +-++--.+++|-|+|+++|+...  ++  
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence            3445567899764  6776654    2  67999999998664332     22333457899999999998764  22  


Q ss_pred             EEEEEecCCCcceeecCceec---CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCe--EE
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTI---PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQ--VL  148 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~  148 (254)
                      |.+|.    ++...+. ...+   +....|..|.||+|+..||+-..|. |++|-....+  +..+.++.|.....  ..
T Consensus       283 VvFfE----rNGLrhg-eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~  354 (928)
T PF04762_consen  283 VVFFE----RNGLRHG-EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFV  354 (928)
T ss_pred             EEEEe----cCCcEee-eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCce
Confidence            44554    2222221 1111   2345899999999999999977555 9999753322  23344555544332  35


Q ss_pred             EEeCCCC
Q psy12788        149 VKPLSGE  155 (254)
Q Consensus       149 v~~~~~~  155 (254)
                      -|+...+
T Consensus       355 ~Wdpe~p  361 (928)
T PF04762_consen  355 KWDPEKP  361 (928)
T ss_pred             EECCCCC
Confidence            6666655

>KOG2315|consensus

Probab=98.60  E-value=9.5e-07  Score=80.07  Aligned_cols=112  Identities=13%  Similarity=0.283  Sum_probs=81.0

Q ss_pred             CCCCEEEEecCC---e-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---c-EEEEE
Q psy12788          7 PVPPYALSWPAG---Y-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---N-IKLFA   78 (254)
Q Consensus         7 ~~~v~~l~w~~~---~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~-i~l~d   78 (254)
                      .++|.++.|+++   . ++-|-.=-++-|+|..|.++-.|.       +++=+++-|+|.|++++.++++   + +.+||
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-------CCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            478999999984   2 444445668999999999884432       3466789999999999999887   3 77999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTIW  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~~  133 (254)
                      ....+..-      .+ ....-+-+.|+|||+++.+++.      |+.++||++ +|+..+
T Consensus       343 v~n~K~i~------~~-~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~  395 (566)
T KOG2315|consen  343 VPNRKLIA------KF-KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH  395 (566)
T ss_pred             ccchhhcc------cc-ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence            75533211      11 1123456899999999999984      789999996 444443

>KOG1240|consensus

Probab=98.59  E-value=1.1e-06  Score=86.08  Aligned_cols=163  Identities=16%  Similarity=0.146  Sum_probs=101.0

Q ss_pred             EeCCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCCcceeecCc--eecCCCCcEeEEEEec
Q psy12788         32 YESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN--KTIPNLYTISALSWKR  107 (254)
Q Consensus        32 Wd~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~--~~~~~~~~i~~l~~sp  107 (254)
                      |+..|..+..+.     .|...+..++.++ .+.+|++||.|+ +|+|+...-.+.....+.  .-.....+++.+..-+
T Consensus      1034 W~p~G~lVAhL~-----Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH-----EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCccceEeehhh-----hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            888888885553     6777777777765 569999999997 899996432211000000  0111235799999999


Q ss_pred             CCCeEEEeecCCcEEEEeeee--e-eeE----------eecee-------------EEEEe-cCCeEEEEeCCCCCceee
Q psy12788        108 DGSRIACGGLCGSVELFESVL--K-RTI----------WKGKF-------------EMIYV-SPSQVLVKPLSGESKGRG  160 (254)
Q Consensus       108 dG~~la~g~~dg~v~iwd~~~--~-~~~----------~~~~~-------------~~~~~-~~~~~~v~~~~~~~~~~~  160 (254)
                      .|..+|+|+.||.|++.++..  . +..          ..+.+             .+.|. .-+.+..||..+...  .
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~--~ 1186 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD--A 1186 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh--H
Confidence            999999999999999987632  1 100          01111             11121 223455666654320  0


Q ss_pred             EEEE-ecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCce
Q psy12788        161 VILK-SQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       161 ~~l~-s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~  201 (254)
                      -.++ ..-.+.|+++++++-..|++ |.+.+.+.+|||+-+..
T Consensus      1187 w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1187 WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP 1229 (1431)
T ss_pred             HhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce
Confidence            0011 11124699999998777766 55567888999997753

>KOG1272|consensus

Probab=98.56  E-value=2e-07  Score=82.73  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      ..|..|.|-|.  +|++++.-+-++--| ..|+++..+.     --.+.+..+.-+|-.-.+-+|..++ +-+|..+...
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            35777888773  577888888787668 8898886664     1235788889999888888888786 7788754333


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      ..     .+.+-|.++|.+|++.|+|+|+|+.+.|..++|||++.-+..                            ..+
T Consensus       285 PL-----vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql----------------------------~t~  331 (545)
T KOG1272|consen  285 PL-----VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL----------------------------HTY  331 (545)
T ss_pred             hH-----HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc----------------------------cee
Confidence            22     334557889999999999999999999999999998632210                            011


Q ss_pred             EecCCCceeEEEEecCcEEEEEECCCcEEEE-eccC
Q psy12788        164 KSQYGYEITDVAIMGNDRYLVARTPDTLLLG-DLHR  198 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~-dl~~  198 (254)
                      ++  ......++||. --+++++.-..+.|| |+-.
T Consensus       332 ~t--p~~a~~ls~Sq-kglLA~~~G~~v~iw~d~~~  364 (545)
T KOG1272|consen  332 RT--PHPASNLSLSQ-KGLLALSYGDHVQIWKDALK  364 (545)
T ss_pred             ec--CCCcccccccc-ccceeeecCCeeeeehhhhc
Confidence            11  13445666773 446666677788888 6554

>KOG1272|consensus

Probab=98.54  E-value=1.5e-07  Score=83.50  Aligned_cols=177  Identities=11%  Similarity=0.133  Sum_probs=129.2

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~   84 (254)
                      ..++.+.++.  ..|+-||.-|.+-.+| .++++...+.      -...|..+.|-.+-+++|++-..-+.+||-    .
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~----~  199 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHNEQFFAVAQKKYVYVYDN----N  199 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcchHHHHhhhhceEEEecC----C
Confidence            4677888865  4799999999999999 8888775553      124688999999999999987666789982    2


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----c--------eeE-EEEe--cCCeEE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----G--------KFE-MIYV--SPSQVL  148 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~--------~~~-~~~~--~~~~~~  148 (254)
                      ..+   ...+....+|..+.|=|-==+|++++..|.+..-|+.+|+....     +        ++. +...  +.++|.
T Consensus       200 GtE---lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  200 GTE---LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS  276 (545)
T ss_pred             CcE---EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence            111   12234456899999999989999999999999999987765421     1        121 2223  345788


Q ss_pred             EEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCc
Q psy12788        149 VKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNL  200 (254)
Q Consensus       149 v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~  200 (254)
                      +|.-.+..   .++-.-.+.++|.+|++.++++|++ ++-|+.++||||++-.
T Consensus       277 lWSP~ske---PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  277 LWSPNSKE---PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             ecCCCCcc---hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            88776653   3332234567899999999998765 6779999999998643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.52  E-value=9.1e-05  Score=73.70  Aligned_cols=183  Identities=16%  Similarity=0.225  Sum_probs=121.6

Q ss_pred             EEEEecC--CeEEEEeC---CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788         11 YALSWPA--GYILAAGS---DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV   85 (254)
Q Consensus        11 ~~l~w~~--~~l~s~s~---D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~   85 (254)
                      .+++|.|  +.||+.-.   ...|.+|.++|-....|..... .....|..++|++|+..||+--.|.+++|-..  .-.
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~-~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~--NYH  336 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFD-PEEEKVIELAWNSDSEILAVWLEDRVQLWTRS--NYH  336 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCC-CCCceeeEEEECCCCCEEEEEecCCceEEEee--CCE
Confidence            3679987  45666543   3568899999988777776543 45568999999999999999888889999743  334


Q ss_pred             eeecCceec--CCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee-----ceeEEEEecCCeEEEEeCCCCCc
Q psy12788         86 WEEQPNKTI--PNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK-----GKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        86 ~~~~~~~~~--~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |-.  ..++  .....+..+.|+|. ...|...+.+|.+..++....-....     ..-.+.-++..++++.++....+
T Consensus       337 WYL--Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V  414 (928)
T PF04762_consen  337 WYL--KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV  414 (928)
T ss_pred             EEE--EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence            522  2222  22334556999995 55688888889888877543222211     11122334555788888776544


Q ss_pred             eeeEEEEe-cCCCceeEEEEecCc-EEEEEECCCcEEEEeccC
Q psy12788        158 GRGVILKS-QYGYEITDVAIMGND-RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       158 ~~~~~l~s-~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~  198 (254)
                      .+++.... .....|..++|+++. .+++-.+|+++.+|....
T Consensus       415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            23332222 345689999999765 478888899999988554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.52  E-value=3.4e-05  Score=69.25  Aligned_cols=158  Identities=15%  Similarity=0.129  Sum_probs=106.9

Q ss_pred             CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc--EEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN--IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~--i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      ++|+..|. +++.|.+..+...-.+      ++...|.-..+.-+++-++.|..|+  +-++|.....    .  .+..+
T Consensus       333 d~ia~VSR-GkaFi~~~~~~~~iqv------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~--kr~e~  399 (668)
T COG4946         333 DYIALVSR-GKAFIMRPWDGYSIQV------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----V--KRIEK  399 (668)
T ss_pred             cEEEEEec-CcEEEECCCCCeeEEc------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----E--EEeeC
Confidence            57777776 4566666433322111      5667798888888888888888774  7899854221    1  22334


Q ss_pred             CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE
Q psy12788         96 NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA  175 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~  175 (254)
                      ..+.|.++..+|||++++++.....+.+.|+.++..                            ++.=+|. .+-|+.++
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv----------------------------~~idkS~-~~lItdf~  450 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV----------------------------RLIDKSE-YGLITDFD  450 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe----------------------------eEecccc-cceeEEEE
Confidence            567899999999999999998888877777543321                            1222222 24689999


Q ss_pred             EecCcEEEE-----EECCCcEEEEeccCCceeeEeCCC---------CCCceeEEe
Q psy12788        176 IMGNDRYLV-----ARTPDTLLLGDLHRNLLSEVLWPD---------SGRNEKFYF  217 (254)
Q Consensus       176 ~~~~~~~~v-----~~~d~~i~i~dl~~~~~~~~~~~~---------~~g~~~~~~  217 (254)
                      ++++.+|++     +.-.+.|+|+|+.++|+.++.-+.         ++|+-.|.+
T Consensus       451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence            999999887     233568999999999987664321         566666654

>KOG4227|consensus

Probab=98.51  E-value=3.1e-06  Score=74.09  Aligned_cols=125  Identities=11%  Similarity=0.050  Sum_probs=90.6

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC--cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK--SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~--~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      +|.+-|+++.||.+|+.||+|+.|. ++||......  +.-.....+..+|...|.+++|..-.+.+.+|..+++|...|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            6888999999999999999999995 8999864210  110111233445567899999999999999999999999999


Q ss_pred             eeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCc
Q psy12788        126 SVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~  200 (254)
                      +.+++.++-..               -.            ...+.|..+..+|-+ .+++.+.++.+.|||.+..+
T Consensus       134 iEt~qsi~V~~---------------~~------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  134 IETKQSIYVAN---------------EN------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             cccceeeeeec---------------cc------------CcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            87766543210               00            112457777777755 46677778899999998765

>KOG2066|consensus

Probab=98.49  E-value=5.2e-06  Score=78.29  Aligned_cols=185  Identities=14%  Similarity=0.178  Sum_probs=126.2

Q ss_pred             CCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788          9 PPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE   87 (254)
Q Consensus         9 ~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~   87 (254)
                      .+++++++...|+-|.-+|.+++.+..|++...++      |...      .-+|+++|++|.|+ +.|...-+....  
T Consensus        41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~------~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--  106 (846)
T KOG2066|consen   41 AISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFD------HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--  106 (846)
T ss_pred             HHHHHHhhcceeeeccccceEEEEecCCccccccc------cccc------ccCCceEEEecCCCcEEEeeccCCccc--
Confidence            34566667778999999999999998887643343      2221      66899999999997 766553322221  


Q ss_pred             ecCceecCCCCcEeEEEEecC-----CCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         88 EQPNKTIPNLYTISALSWKRD-----GSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spd-----G~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                          ....-..++.+|+++||     .+++++|+..| +.++...   ..                    ..    ...+
T Consensus       107 ----~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~---wl--------------------gn----k~~v  154 (846)
T KOG2066|consen  107 ----TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN---WL--------------------GN----KDSV  154 (846)
T ss_pred             ----eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh---hh--------------------cC----ccce
Confidence                11222358999999999     67899999888 7666421   00                    00    0111


Q ss_pred             EEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc-eeeEeCCCCCCc-eeEEeeCceEEEEEeCCeeEEEEeecCe
Q psy12788        163 LKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL-LSEVLWPDSGRN-EKFYFDNVTVCLVFNAGELSIIEYGNNE  240 (254)
Q Consensus       163 l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~  240 (254)
                      +.+...+.|.+|.+.  +.+++..+|..++++|+.+++ +..++|+-+..+ +.|     -..+.|.+....+++-|++=
T Consensus       155 ~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~f-----pphl~W~~~~~LVIGW~d~v  227 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELF-----PPHLHWQDEDRLVIGWGDSV  227 (846)
T ss_pred             eeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccC-----CCceEecCCCeEEEecCCeE
Confidence            222335689999988  468888899999999999986 466777521111 333     35688888888889998888


Q ss_pred             eeeeee
Q psy12788        241 ILTCVR  246 (254)
Q Consensus       241 ~~~~~~  246 (254)
                      -+-.+|
T Consensus       228 ~i~~I~  233 (846)
T KOG2066|consen  228 KICSIK  233 (846)
T ss_pred             EEEEEe
Confidence            777777

>KOG4497|consensus

Probab=98.48  E-value=4.6e-06  Score=71.59  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             CEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeCC-cEEEEEecCCC
Q psy12788         10 PYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYD-NIKLFAWSPSK   83 (254)
Q Consensus        10 v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d-~i~l~d~~~~~   83 (254)
                      |.-+.|..+   .|..+..|+.|.+|+ ..-+-.-.+    + ..+.++.+++|||||+. |.+..+| ++.+|.++++.
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI----d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI----D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecceeEEEe----c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence            455778754   466677788999999 433333222    2 45578999999999965 5566788 68899987655


Q ss_pred             cceeecCceecCC-CCcEeEEEEecCCCeEEEeecCCc---EEEEeee----eeeeEee--ceeEEEEecCCe-EEEEeC
Q psy12788         84 SVWEEQPNKTIPN-LYTISALSWKRDGSRIACGGLCGS---VELFESV----LKRTIWK--GKFEMIYVSPSQ-VLVKPL  152 (254)
Q Consensus        84 ~~~~~~~~~~~~~-~~~i~~l~~spdG~~la~g~~dg~---v~iwd~~----~~~~~~~--~~~~~~~~~~~~-~~v~~~  152 (254)
                      ...       +++ ...+..++|+|||++.|..+.-.-   +.|....    .+.+..+  ..--+.+++++. +.|||-
T Consensus       126 ~~~-------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~  198 (447)
T KOG4497|consen  126 GYL-------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN  198 (447)
T ss_pred             eEE-------ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence            422       222 234678999999999998774311   1111000    0000000  001123455543 456765


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEE
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLG  194 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~  194 (254)
                      .-+   .++.. =+-|..+..++++|.++|+ +|+.|+.++|-
T Consensus       199 ~Le---ykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  199 VLE---YKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             hhh---heeee-eeeccceeEEEeccccceEEeeccchhhhhh
Confidence            443   22221 1223468889999978775 57778888763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=5e-07  Score=53.58  Aligned_cols=32  Identities=22%  Similarity=0.560  Sum_probs=29.8

Q ss_pred             cCCCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      ..|...|++|+|+|++++||+|+.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.47  E-value=9.4e-05  Score=66.39  Aligned_cols=223  Identities=12%  Similarity=0.075  Sum_probs=111.2

Q ss_pred             CCEEEEecCC--eEEEE-eCCCcEEEEe-CCCCEEEEeeec---CCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC
Q psy12788          9 PPYALSWPAG--YILAA-GSDRIVTIYE-SDGRVHRIFDYT---APHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP   81 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~-s~D~~i~vWd-~~g~~~~~~~~~---~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~   81 (254)
                      .+.+++++++  +++++ -.++++.++| .+.++++.+...   .+ .....+.++..+|....+++.-.|.=++|-++.
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~-~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD-GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT-TS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc-ccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            4677888764  56555 4689999999 788888877521   11 123467888899999988888887434554432


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeeeeeeeEe---------ecee--------------
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESVLKRTIW---------KGKF--------------  137 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~~~~~~~---------~~~~--------------  137 (254)
                      ....-..  ...++.........|+|||+|++++ .....+.++|...++...         .++.              
T Consensus       158 ~d~~~~~--~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~  235 (369)
T PF02239_consen  158 SDPKNLK--VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT  235 (369)
T ss_dssp             TTSSCEE--EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred             ccccccc--eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee
Confidence            2211111  1223333467789999999987665 456788888876544332         1110              


Q ss_pred             ------EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE----C-CCcEEEEeccCCc------
Q psy12788        138 ------EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR----T-PDTLLLGDLHRNL------  200 (254)
Q Consensus       138 ------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~----~-d~~i~i~dl~~~~------  200 (254)
                            .+...+...+.+++...-+  ....+ ...|.. .-+.-+|+.+++-..    . .+++.+.|.++.+      
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~~wk--vv~~I-~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~  311 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDYAWK--VVKTI-PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT  311 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTTBTS--EEEEE-E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred             ccccceecccccCCccccchhhcCe--EEEEE-ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence                  0111111112223333221  11111 112333 566678888766544    3 4699999999754      


Q ss_pred             ------eeeEeCCCCCCceeEEeeCceEEEEEeCC-eeEEEEeecCeeeeeee
Q psy12788        201 ------LSEVLWPDSGRNEKFYFDNVTVCLVFNAG-ELSIIEYGNNEILTCVR  246 (254)
Q Consensus       201 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~  246 (254)
                            +..+.|+ ++|++.|.       .+|+.+ .+.+++-..-+.+.++.
T Consensus       312 ~~~~~~~~h~ef~-~dG~~v~v-------S~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  312 PGPGKRVVHMEFN-PDGKEVWV-------SVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             HHHT--EEEEEE--TTSSEEEE-------EEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCcEeccEEC-CCCCEEEE-------EEecCCCEEEEEECCCcEEEEEEE
Confidence                  3466777 77777763       233332 44444444444444444

...

>KOG0644|consensus

Probab=98.45  E-value=1e-07  Score=89.75  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +|-..|+|++|+..|.++.+|+.|. ++||.-.+....     .....|...|+.++-+....++|+++.|..|++|.+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----ccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            7888999999999999999999997 899984332221     1224567899999999999999999999999999764


Q ss_pred             eeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        128 LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      .+.++                            .+|+. +.+.|++|+|+|-.   ..+.|++++|||.+
T Consensus       263 ~~~pv----------------------------svLrg-htgavtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  263 DGAPV----------------------------SVLRG-HTGAVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             CCchH----------------------------HHHhc-cccceeeeccCccc---cCCCCCceEecccc
Confidence            33221                            22332 34579999999843   55668899999977

>KOG2321|consensus

Probab=98.44  E-value=4e-06  Score=76.42  Aligned_cols=120  Identities=14%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecC--CCCCCC-----CEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTA--PHYKER-----EFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~--~~~~~~-----~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      ..+.+|..++  .+|++|+.|+.|-+|| +.-....++++..  . .|++     .|++++|+-||-.+|+|...+ +.|
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~-s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i  254 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN-SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI  254 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC-CCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence            5677788776  4677888899999999 5555555555321  1 2333     399999999999999999886 889


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTI  132 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~  132 (254)
                      ||+...+...    .+.....-+|..+.|-+.+..=.+.+. ...++|||-++++..
T Consensus       255 yDLRa~~pl~----~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  255 YDLRASKPLL----VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM  307 (703)
T ss_pred             EEcccCCcee----ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce
Confidence            9987766532    222233458999999876433223333 457889997766543

>KOG4532|consensus

Probab=98.41  E-value=2.5e-05  Score=65.47  Aligned_cols=154  Identities=8%  Similarity=-0.091  Sum_probs=98.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCC
Q psy12788         19 YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNL   97 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~   97 (254)
                      .|.-++.|+++++.+.++...+...|..    .-...+++++||++++++-+.- ++-.|.+.......+.  ..+.+..
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~--~~~a~t~  203 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN--IYEAPTS  203 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee--eEecccC
Confidence            4777889999999985554433222221    1237899999999998876544 4666665443322111  2333344


Q ss_pred             CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe
Q psy12788         98 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM  177 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~  177 (254)
                      ..=.+.+||.....+|++..||++.|||++..+....                        .....+.++.+.+....|+
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~------------------------~~sstrp~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA------------------------EISSTRPHHNGAFRVCRFS  259 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchh------------------------hhcccCCCCCCceEEEEec
Confidence            4557799999999999999999999999864322100                        0111223456678888888


Q ss_pred             cCc--EEEEEEC-CCcEEEEeccCCcee
Q psy12788        178 GND--RYLVART-PDTLLLGDLHRNLLS  202 (254)
Q Consensus       178 ~~~--~~~v~~~-d~~i~i~dl~~~~~~  202 (254)
                      +.+  .++.-+. -+.+.+.|+++++-.
T Consensus       260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  260 LYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             CCCcceEEEEecCcceEEEEEcccCcee
Confidence            533  3333333 457889999998643

>KOG3881|consensus

Probab=98.40  E-value=2.3e-06  Score=74.59  Aligned_cols=114  Identities=15%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             CEEEEecC----CeEEEEeCCCcEEEEe-CCC-CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788         10 PYALSWPA----GYILAAGSDRIVTIYE-SDG-RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus        10 v~~l~w~~----~~l~s~s~D~~i~vWd-~~g-~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      +.++.|-+    ..||++..=+.+|+|| +.+ +++..|++     .+.++++++..|+|+++.+|..-+ +..||.+..
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-----LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-----ccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence            34455532    3699999999999999 544 57777763     356899999999999999998765 778886543


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI  132 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~  132 (254)
                      .-..    .....-.+.|.+|.-+|.+++||+++.|..|||+|+.+++++
T Consensus       280 kl~g----~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  280 KLLG----CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eeec----cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            2211    112233578999999999999999999999999999886655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.38  E-value=0.00086  Score=59.56  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=65.6

Q ss_pred             CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEEecCCCcceeecCceec
Q psy12788         27 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----------DNIKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        27 ~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-----------d~i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      ++|.+.| .+++.+.++.....      ...+ +||||+.|.++..           |.+.+||..+.+...+.    .+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i----~~   95 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI----EL   95 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE----cc
Confidence            7899999 67788877763221      1234 9999998877765           35899996543332211    11


Q ss_pred             CC------CCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEe
Q psy12788         95 PN------LYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIW  133 (254)
Q Consensus        95 ~~------~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~  133 (254)
                      +.      .......++||||++|.+...  +..|.+.|+.+++...
T Consensus        96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence            11      112346899999999998873  6899999998877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00047  Score=59.97  Aligned_cols=169  Identities=14%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCC---CcEEEE--e-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSD---RIVTIY--E-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D---~~i~vW--d-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~   73 (254)
                      +..+...|.=|+|+++  .|.++-.+   +.|..+  | .+|++. -+....  ....+.+.++++++|++|.+++.. +
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~--~~g~~p~yvsvd~~g~~vf~AnY~~g  111 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQT--LPGSPPCYVSVDEDGRFVFVANYHSG  111 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeeccc--cCCCCCeEEEECCCCCEEEEEEccCc
Confidence            4456677888999985  47777654   556555  5 346543 222111  112344889999999999999877 3


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCc----------EeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEE
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYT----------ISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIY  141 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~----------i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~  141 (254)
                       +.++-++.....+..  .....|.+.          +....+.|||++|++.+. .-.|.+|++..+++.....     
T Consensus       112 ~v~v~p~~~dG~l~~~--v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-----  184 (346)
T COG2706         112 SVSVYPLQADGSLQPV--VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP-----  184 (346)
T ss_pred             eEEEEEcccCCccccc--eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc-----
Confidence             888877554333322  112222222          788999999999998874 3356677765333221111     


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE--EEEECCCcEEEEeccC--Ccee
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY--LVARTPDTLLLGDLHR--NLLS  202 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~--~v~~~d~~i~i~dl~~--~~~~  202 (254)
                                         ..+  ..|.--+-|.|+|++++  ++.=-+++|.+|....  +++.
T Consensus       185 -------------------~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         185 -------------------AEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             -------------------ccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence                               111  22344567889998874  5555588999997776  5544

>KOG1064|consensus

Probab=98.33  E-value=2.1e-06  Score=86.78  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=99.4

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC-------------
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK-------------   83 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~-------------   83 (254)
                      +-+||+.|+.|++|. ..++.+-.++.  . + +..|+.+.|+.+|..+..+..|+ +-+|..+++.             
T Consensus      2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt--~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRT--A-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSD 2297 (2439)
T ss_pred             eEEecCCCceEEEEeccCCCeEEEeec--c-C-cchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccc
Confidence            568999999999998 66776655542  1 3 37899999999999999888886 7788654321             


Q ss_pred             --------------------cceeec-----CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeE
Q psy12788         84 --------------------SVWEEQ-----PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE  138 (254)
Q Consensus        84 --------------------~~~~~~-----~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~  138 (254)
                                          ..|...     ......|.+.++.+++-|.-+.|++|+.+|.|.+||++-++++..-   
T Consensus      2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~--- 2374 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF--- 2374 (2439)
T ss_pred             eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh---
Confidence                                011100     0011234567999999999999999999999999998755544211   


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                                                       ..+.  .++.|+.+++.+.++||++..-.
T Consensus      2375 ---------------------------------~~~~--~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2375 ---------------------------------QALD--TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ---------------------------------hhhh--hhheeeccCcccceEEEEccccc
Confidence                                             1111  24567778889999999988754

>KOG0280|consensus

Probab=98.32  E-value=6.9e-06  Score=69.43  Aligned_cols=117  Identities=14%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             CEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-EEEEEec-CCC
Q psy12788         10 PYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-IKLFAWS-PSK   83 (254)
Q Consensus        10 v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i~l~d~~-~~~   83 (254)
                      -.++.|++  ..++++-.++.+-+-+ ..+.+.+.  ...+ +|+.++..++|+-. .+++-+|+.|+ ++.||.+ +..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~v--q~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKV--QTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeec--cccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            35677765  4677777778887555 44443321  1234 89999999999854 46788999995 8999976 333


Q ss_pred             cceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeee-eeeeEe
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESV-LKRTIW  133 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~-~~~~~~  133 (254)
                      -.|..    ...|...|.+|.=|| ++.+||+|+.|-.+++||.+ .++++.
T Consensus       201 ~i~~n----~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  201 FIWHN----SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eeeec----ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            34432    234566788888776 58899999999999999987 455553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=0.00085  Score=58.39  Aligned_cols=178  Identities=20%  Similarity=0.220  Sum_probs=103.6

Q ss_pred             CCCEEEEecC--CeEEEEeC-CCcEEEEe--CCCCEE---EEeeecCCCCCC----CCEEEEEECCCCCEEEEEe--CCc
Q psy12788          8 VPPYALSWPA--GYILAAGS-DRIVTIYE--SDGRVH---RIFDYTAPHYKE----REFTVACSSPSGQAVVVGS--YDN   73 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~-D~~i~vWd--~~g~~~---~~~~~~~~~~~~----~~v~~~a~sPdg~~la~gs--~d~   73 (254)
                      .++..++.++  ++++++.. -+.|.++-  .+|.+.   +.+.+.-..+|+    ..+-+.-|.|+|++|++..  .|+
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            3457788876  36777765 46788885  456433   222221110111    1277899999999999875  567


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~  152 (254)
                      +.+|++..  +..+.......+.-....-|.|+|+|++..+-+ .+++|.+|.....    .+.|+.       +...+.
T Consensus       169 i~~y~~~d--g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----~g~~~~-------lQ~i~t  235 (346)
T COG2706         169 IFLYDLDD--GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----VGKFEE-------LQTIDT  235 (346)
T ss_pred             EEEEEccc--CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----CceEEE-------eeeecc
Confidence            88999873  222222122233334567799999999987766 5899999986431    011110       000001


Q ss_pred             CCCCceeeEEEEecCC-CceeEEEEecCcEEEEEEC--CCcEEEEe--ccCCceeeEeCC
Q psy12788        153 SGESKGRGVILKSQYG-YEITDVAIMGNDRYLVART--PDTLLLGD--LHRNLLSEVLWP  207 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~~~v~~~--d~~i~i~d--l~~~~~~~~~~~  207 (254)
                      -...         ..| .....|.++++++|+-++.  .+.|-++.  -.++++.-+.+.
T Consensus       236 lP~d---------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~  286 (346)
T COG2706         236 LPED---------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT  286 (346)
T ss_pred             Cccc---------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence            0100         111 2466888999999988876  44666664  445665544444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=4.4e-06  Score=76.57  Aligned_cols=112  Identities=20%  Similarity=0.302  Sum_probs=75.0

Q ss_pred             CCCEEEEecC---CeEEEE----eCCCc----EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788          8 VPPYALSWPA---GYILAA----GSDRI----VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I   74 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~----s~D~~----i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i   74 (254)
                      ..|.++.|+.   ..|.+.    +.++.    -.+|+ ...+ ++......- +.+..+.+++++|+.+.|+.|+.|+ +
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeE
Confidence            4567777763   334433    33443    23456 2222 222222212 4667899999999999999999996 8


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ++||...+...       .....-.++.++|+|+|..+++|+..|.+++||+..
T Consensus       284 iLyD~~~~~t~-------~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  284 ILYDTTRGVTL-------LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCCeee-------eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            99995432211       112233578899999999999999999999999753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.31  E-value=9.9e-05  Score=74.55  Aligned_cols=175  Identities=17%  Similarity=0.174  Sum_probs=102.1

Q ss_pred             CCEEEEecC-C--eEEEEeCCCcEEEEe-CCCCEEEEeeec-----CCCC------CCCCEEEEEECCCCCEEEEE-eCC
Q psy12788          9 PPYALSWPA-G--YILAAGSDRIVTIYE-SDGRVHRIFDYT-----APHY------KEREFTVACSSPSGQAVVVG-SYD   72 (254)
Q Consensus         9 ~v~~l~w~~-~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~-----~~~~------~~~~v~~~a~sPdg~~la~g-s~d   72 (254)
                      .+..+++++ +  .+++.+.+++|++|| .+|. +..+...     .. +      .-.....++|+|+|+.|.++ +.+
T Consensus       684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~~~~G~G~~~~~~-g~~~~~~~~~~P~GIavspdG~~LYVADs~n  761 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TRVFSGDGYERNLN-GSSGTSTSFAQPSGISLSPDLKELYIADSES  761 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EEEEecCCccccCC-CCccccccccCccEEEEeCCCCEEEEEECCC
Confidence            467899987 2  466777788999999 4443 3333100     00 0      01235679999999855444 444


Q ss_pred             -cEEEEEecCCCcceeec-------CceecC---------CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec
Q psy12788         73 -NIKLFAWSPSKSVWEEQ-------PNKTIP---------NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG  135 (254)
Q Consensus        73 -~i~l~d~~~~~~~~~~~-------~~~~~~---------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~  135 (254)
                       +|++||.......+...       ....+.         .......++++|||+.+++-..++.|++||..++....  
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t--  839 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT--  839 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE--
Confidence             59999975432111000       000000         01134689999999999999999999999976543221  


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCce
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLL  201 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~  201 (254)
                           ..+.+..   ....+   .  .+...+ .....|+++++++++++.+ +++|++||+.++++
T Consensus       840 -----iaG~G~~---G~~dG---~--~~~a~l-~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        840 -----LAGTGKA---GFKDG---K--ALKAQL-SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -----EeccCCc---CCCCC---c--cccccc-CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                 1111000   00001   0  011111 3567899998888766655 67999999998864

>KOG4190|consensus

Probab=98.31  E-value=6.4e-06  Score=75.03  Aligned_cols=167  Identities=14%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             cccCCCCCEEEEe-c-CCeEEEEeCCCcEEEEe--CCCCEE----EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcE
Q psy12788          3 VVQHPVPPYALSW-P-AGYILAAGSDRIVTIYE--SDGRVH----RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNI   74 (254)
Q Consensus         3 l~~h~~~v~~l~w-~-~~~l~s~s~D~~i~vWd--~~g~~~----~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i   74 (254)
                      +.+|...|.+++- + .+.++++|.|++|++|.  .+|..+    -.|.|  . .|..+|..+.|-.+-+++|+. ..++
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY--~-aHkk~i~~igfL~~lr~i~Sc-D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY--Q-AHKKPIHDIGFLADLRSIASC-DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh--h-hccCcccceeeeeccceeeec-cCcc
Confidence            5678877776644 3 36899999999999997  344222    12333  3 788999999999998888754 2358


Q ss_pred             EEEEecCCCcceeecCceecCCCC---cEeEEEEecCCCeEEEe-ecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEE
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLY---TISALSWKRDGSRIACG-GLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVK  150 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~---~i~~l~~spdG~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  150 (254)
                      .+||-=..+.. ..  ...-+..+   .|.++. +-|..++..| +...+|+++|.+......+.+            |.
T Consensus       807 HlWDPFigr~L-aq--~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k------------Vc  870 (1034)
T KOG4190|consen  807 HLWDPFIGRLL-AQ--MEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELK------------VC  870 (1034)
T ss_pred             eeecccccchh-Hh--hhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEE------------ec
Confidence            99994221110 00  00011112   233222 3344555555 678899999986544332211            11


Q ss_pred             eCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCce
Q psy12788        151 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~  201 (254)
                      +.            +.....+..|++.+.+.++ ++-+++++.+-|.++|++
T Consensus       871 na------------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  871 NA------------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             cC------------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence            11            1122346667776666544 455677777778887774

>KOG3914|consensus

Probab=98.29  E-value=1.7e-06  Score=75.53  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=70.0

Q ss_pred             EeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcE
Q psy12788         23 AGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTI  100 (254)
Q Consensus        23 ~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i  100 (254)
                      ++.+..+.+|. ..|.+...     . +|-..++.++|+||++.++++..| +||+-.+.. ...   .....+.|...|
T Consensus       128 agD~~~~di~s~~~~~~~~~-----l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~---IesfclGH~eFV  197 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRCEPI-----L-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFV---IESFCLGHKEFV  197 (390)
T ss_pred             cCCceeeeeecccccCcchh-----h-hhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccc---hhhhccccHhhe
Confidence            34445566665 22443311     2 788999999999999999999988 587755321 111   112345677889


Q ss_pred             eEEEEecCCCeEEEeecCCcEEEEeeeeeeeE
Q psy12788        101 SALSWKRDGSRIACGGLCGSVELFESVLKRTI  132 (254)
Q Consensus       101 ~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~  132 (254)
                      ..++.-++ ..|++|+.|+++++||...++..
T Consensus       198 S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  198 STISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            99998765 55899999999999999888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.20  E-value=0.0016  Score=66.05  Aligned_cols=194  Identities=8%  Similarity=-0.002  Sum_probs=108.1

Q ss_pred             CEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCC---------CCCCEEEEEECCCCCEEEEEeCC--cEE
Q psy12788         10 PYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHY---------KEREFTVACSSPSGQAVVVGSYD--NIK   75 (254)
Q Consensus        10 v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~---------~~~~v~~~a~sPdg~~la~gs~d--~i~   75 (254)
                      |..+++++  + ..++-+..+.|+++|.+|+.+..+.-....+         .-.....++++|+++.|.++...  .++
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45677764  2 4566667788999998887665543100000         11235789999998866555433  488


Q ss_pred             EEEecCCCcceeec-Cce--ec--------CCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe---e------
Q psy12788         76 LFAWSPSKSVWEEQ-PNK--TI--------PNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW---K------  134 (254)
Q Consensus        76 l~d~~~~~~~~~~~-~~~--~~--------~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~---~------  134 (254)
                      .+|.....-.--.. ...  ..        ........|+|+| +|.++++.+.++.|++||...+....   .      
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            88854321100000 000  00        0012346899999 56667777788999999975443210   0      


Q ss_pred             -----------ceeEEEEec-----------CCeEEEEeCCCCCceeeEEEEe---------cCC-----------Ccee
Q psy12788        135 -----------GKFEMIYVS-----------PSQVLVKPLSGESKGRGVILKS---------QYG-----------YEIT  172 (254)
Q Consensus       135 -----------~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~l~s---------~~~-----------~~i~  172 (254)
                                 .+.-+.+.+           .++++++|+.++.  .......         .+|           ..-.
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                       011122222           3466777776653  1111100         000           1235


Q ss_pred             EEEEecCcEEEEEE-CCCcEEEEeccCCceeeEe
Q psy12788        173 DVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       173 ~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~~  205 (254)
                      .+++++++.++++. .+++|++||..++.+..+.
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia  841 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA  841 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence            78888877665554 4779999999988876553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.19  E-value=0.00016  Score=65.10  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             cCCCCCEEEEec--CCeEEEEeCCC-cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWP--AGYILAAGSDR-IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~--~~~l~s~s~D~-~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +|...|.-..+.  +..++.|..|+ .+-|+|..|...+.+.     +.-+.|.+++.+|||++++++.... +.+.|++
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-----~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----CCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            444444444443  34688888888 8999996666665554     4456899999999999988876442 4455554


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeeee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKR  130 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~~  130 (254)
                      +....     .......+-|+..+|||++++||-+--+|    .|+++|+..++
T Consensus       432 ngnv~-----~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         432 NGNVR-----LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             CCCee-----EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            33221     11222345799999999999999887665    67888876544

>KOG2315|consensus

Probab=98.17  E-value=0.00012  Score=66.78  Aligned_cols=130  Identities=17%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE-e-CC-cEEEEEecCCCcceeecCceecCCCCcEeEEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG-S-YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALS  104 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g-s-~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~  104 (254)
                      ++.+.+.+|+...   ..+  .-.++|.++.|+|+|+.||+. + +- .+-+||++.  .      ....-.+++=+++-
T Consensus       252 ~Lyll~t~g~s~~---V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~------~v~df~egpRN~~~  318 (566)
T KOG2315|consen  252 TLYLLATQGESVS---VPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--K------PVFDFPEGPRNTAF  318 (566)
T ss_pred             eEEEEEecCceEE---Eec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--C------EeEeCCCCCccceE
Confidence            4666664454321   111  235799999999999988774 3 33 477888532  1      11122345567899


Q ss_pred             EecCCCeEEEeec---CCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE
Q psy12788        105 WKRDGSRIACGGL---CGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR  181 (254)
Q Consensus       105 ~spdG~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~  181 (254)
                      |||.|++|+.++.   -|.+.+||+..++.+..-                 .              ...-+-..++|+++
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~-----------------~--------------a~~tt~~eW~PdGe  367 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF-----------------K--------------AANTTVFEWSPDGE  367 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchhhcccc-----------------c--------------cCCceEEEEcCCCc
Confidence            9999999999885   578999998765544210                 0              01123456778887


Q ss_pred             EE-EEEC------CCcEEEEeccCCce
Q psy12788        182 YL-VART------PDTLLLGDLHRNLL  201 (254)
Q Consensus       182 ~~-v~~~------d~~i~i~dl~~~~~  201 (254)
                      |+ +|.+      |+.++||+.....+
T Consensus       368 ~flTATTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  368 YFLTATTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             EEEEEeccccEEecCCeEEEEecCcee
Confidence            54 4544      57899999876544

>KOG4547|consensus

Probab=98.17  E-value=0.00038  Score=63.81  Aligned_cols=172  Identities=14%  Similarity=0.097  Sum_probs=110.6

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE------CC--------------CCCEEEEEeCCc-EE
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS------SP--------------SGQAVVVGSYDN-IK   75 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~------sP--------------dg~~la~gs~d~-i~   75 (254)
                      +++|....|+.+|+|| ..+++.+.|.-..  ...+..++.+|      +|              |-.++|-|-..+ +.
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            4788899999999999 7777776664211  12233344443      33              222344455554 66


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece------eEEEEecC-----
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK------FEMIYVSP-----  144 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~~~-----  144 (254)
                      +|+.....-.|..   ..-.|.+.|+++.|+.+-..|-+++.|+.+..|+...++......      -.+.+.+|     
T Consensus        84 ~ys~~~g~it~~~---st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   84 LYSVAGGEITAKL---STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEecCCeEEEEE---ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            7776543333321   112356789999999999999999999999999987665543211      12333333     


Q ss_pred             ---CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC-----cEEEEE--ECCCcEEEEecc
Q psy12788        145 ---SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN-----DRYLVA--RTPDTLLLGDLH  197 (254)
Q Consensus       145 ---~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~-----~~~~v~--~~d~~i~i~dl~  197 (254)
                         .++.++|+.++   +.+....+|+.+|.+++|...     +.|+..  .-++-+.+|=++
T Consensus       161 ~as~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  161 TASRQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             eccceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence               57889999998   566666778889999999754     344432  234556666443

>KOG1409|consensus

Probab=98.16  E-value=0.00023  Score=61.63  Aligned_cols=222  Identities=11%  Similarity=0.059  Sum_probs=133.9

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      ++.||...|++..--|  +.+.++++|+++|||- + +|+--..+. .   ..+.+++++++++....|.+|-.++ +.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~---~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-H---YMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-h---hCCCCceEeeeeccceEEEEEEecceEEE
Confidence            5667777777766544  5799999999999996 3 455444442 2   2457899999999998888887665 433


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------ceeE--EEEecCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------GKFE--MIYVSPS  145 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------~~~~--~~~~~~~  145 (254)
                      +.....-+..... ..-..|..+|+.+-|+-.-+++++.+.|+.+.--..+.+..+..         -+|.  ..|+++.
T Consensus        95 fs~sedfnkm~~~-r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   95 FALSEDFNKMTFL-KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEhhhhhhhcchh-hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            3322111111110 12234678999999999999999999999885444333322211         1122  3444442


Q ss_pred             --eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee--eEeC---------CCCCC
Q psy12788        146 --QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS--EVLW---------PDSGR  211 (254)
Q Consensus       146 --~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~--~~~~---------~~~~g  211 (254)
                        ++..-.+..... ..+.....+..++.++.+.+.+ .++.+.+|..+.+||+..++-.  +.-.         .....
T Consensus       174 ~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  174 SGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT  252 (404)
T ss_pred             ccceEEEEEeecCC-ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence              443333322210 2222223445689999998755 4667888999999999866522  1111         11222


Q ss_pred             ceeEEeeCceEEEEEeCC
Q psy12788        212 NEKFYFDNVTVCLVFNAG  229 (254)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g  229 (254)
                      +..+..+.+..-++|++.
T Consensus       253 ~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eeeeeccCCCeEEEEecc
Confidence            344555666677777764

>KOG3914|consensus

Probab=98.16  E-value=5.5e-05  Score=66.31  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=57.9

Q ss_pred             ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCcee
Q psy12788         93 TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEIT  172 (254)
Q Consensus        93 ~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~  172 (254)
                      ...|...+++|+||||+++|.++..|..|++-.+       ...|.+                   ....+  .|..=|-
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y-------pa~f~I-------------------esfcl--GH~eFVS  198 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY-------PATFVI-------------------ESFCL--GHKEFVS  198 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEec-------Ccccch-------------------hhhcc--ccHhhee
Confidence            3567788999999999999999999999988542       221111                   01111  1112366


Q ss_pred             EEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        173 DVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       173 ~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .+++.++..++.++.|+++++||+.+|+..
T Consensus       199 ~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  199 TISLTDNYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeeccCceeeecCCCCcEEEEecccCCcc
Confidence            777776555688899999999999999854

>KOG1334|consensus

Probab=98.16  E-value=7.1e-06  Score=73.49  Aligned_cols=193  Identities=13%  Similarity=0.151  Sum_probs=122.3

Q ss_pred             CccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCCCC-EEEEEeCC
Q psy12788          1 GRVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPSGQ-AVVVGSYD   72 (254)
Q Consensus         1 ~~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPdg~-~la~gs~d   72 (254)
                      +++..|.++|..++-.|   ..|.|+|.|+.+.-.| +.+..-..+. ... .+..   ..++++.+|-.. ++|+|+.|
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~-~~~~~~v~L~~Ia~~P~nt~~faVgG~d  303 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CRE-ADEKERVGLYTIAVDPRNTNEFAVGGSD  303 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eec-cCCccceeeeeEecCCCCccccccCChh
Confidence            35778999999999876   4699999999999888 5554443332 222 2333   578999999766 79999999


Q ss_pred             c-EEEEEecCCCcceeecC-ceecC------CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee-------------
Q psy12788         73 N-IKLFAWSPSKSVWEEQP-NKTIP------NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT-------------  131 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~-~~~~~------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~-------------  131 (254)
                      . +|+||...-...-.... .+..+      ..-.|++++||.+|.-|.++=.|-.|.++....+.-             
T Consensus       304 qf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~  383 (559)
T KOG1334|consen  304 QFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYV  383 (559)
T ss_pred             hhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhcc
Confidence            6 89999532111100000 00111      112699999999988888888898999985322111             


Q ss_pred             --Eeec-----------------eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcE
Q psy12788        132 --IWKG-----------------KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTL  191 (254)
Q Consensus       132 --~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i  191 (254)
                        .|++                 .|.+.-+..+.+.+|+-.++.  ....+... .+-|++|.-+|-...++ .+-|.-|
T Consensus       384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e--ii~~MegD-r~VVNCLEpHP~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE--IIRFMEGD-RHVVNCLEPHPHLPVLASSGIDHDV  460 (559)
T ss_pred             chhhcccccccccceeeeccCccceEEecCccceEEEEecchhH--HHHHhhcc-cceEeccCCCCCCchhhccCCccce
Confidence              1221                 133333445688899888873  22222222 23677888777555444 4558999


Q ss_pred             EEEeccC
Q psy12788        192 LLGDLHR  198 (254)
Q Consensus       192 ~i~dl~~  198 (254)
                      +||-..+
T Consensus       461 KIWTP~~  467 (559)
T KOG1334|consen  461 KIWTPLT  467 (559)
T ss_pred             eeecCCc
Confidence            9997643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.16  E-value=0.00031  Score=64.70  Aligned_cols=77  Identities=16%  Similarity=0.162  Sum_probs=55.3

Q ss_pred             ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCc
Q psy12788         91 NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYE  170 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~  170 (254)
                      ...++....|.++++||+.+.++.|+.||+|.+||...+...                               .....-.
T Consensus       253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-------------------------------~~ka~~~  301 (545)
T PF11768_consen  253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-------------------------------LAKAEFI  301 (545)
T ss_pred             EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-------------------------------eeeeccc
Confidence            445566678999999999999999999999999996422111                               1111234


Q ss_pred             eeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        171 ITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       171 i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                      .+-++++|++. ++||+..+.+.+||+.-
T Consensus       302 P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  302 PTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            66788888775 45566667888898773

>KOG3621|consensus

Probab=98.07  E-value=3.2e-05  Score=72.25  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             EEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee-ecC
Q psy12788         13 LSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE-EQP   90 (254)
Q Consensus        13 l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~-~~~   90 (254)
                      ++-...+|+-|+.-|.++++++.+..++.+..  . +....+..+..|++..++|.|+..+ |-++.++.....-. ..+
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~--~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN--E-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccc--c-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            33344689999999999999977655544331  1 3445677888999999999998875 66666554221111 111


Q ss_pred             ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         91 NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      .....|...|++++||+||..+.+|...|+|.+-.+
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            222335679999999999999999999999976544

>KOG4547|consensus

Probab=98.05  E-value=5.4e-05  Score=69.20  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=84.7

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~   81 (254)
                      .|.+.|.++.|+.+  .|.|++.|..+..|+ .+++.++.+.     ..+..+.++..+|||+++++|+ ..+++||.+.
T Consensus       100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-----~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~  173 (541)
T KOG4547|consen  100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-----EQKPLVSSLCISPDGKILLTAS-RQIKVLDIET  173 (541)
T ss_pred             CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-----cCCCccceEEEcCCCCEEEecc-ceEEEEEccC
Confidence            69999999999875  599999999999999 7777776554     4456789999999999999987 3488999765


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecC-----CCeEEEee-cCCcEEEEeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRD-----GSRIACGG-LCGSVELFESV  127 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spd-----G~~la~g~-~dg~v~iwd~~  127 (254)
                      ..-.     ..+..|..+|.+++|--+     |.++.++. .+..+.+|-.+
T Consensus       174 kevv-----~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  174 KEVV-----ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ceEE-----EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            3321     233456789999999888     77766554 44455666543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.03  E-value=2.2e-05  Score=67.09  Aligned_cols=135  Identities=13%  Similarity=0.113  Sum_probs=86.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCC-----CcEeEEEEecC-CCeEEEeecCCcEE
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNL-----YTISALSWKRD-GSRIACGGLCGSVE  122 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~-----~~i~~l~~spd-G~~la~g~~dg~v~  122 (254)
                      .|+..+++++|+.|.+.+.++..-+|.+|++....+.+..  .--.++.     .-|++..|+|. ...+.-.+..|.|.
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnI--VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNI--VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEE--EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4677899999999999998876558899987654444432  1112232     25899999997 45667788899999


Q ss_pred             EEeeeeeeeE--eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        123 LFESVLKRTI--WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       123 iwd~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      +-|++-..+-  ....|+.+.-+.        ...       .....-..|..+.|+++++|+.+..--+++|||....+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v--------~~~-------ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k  312 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGV--------DVD-------FFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK  312 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcc--------cch-------hHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence            9997521110  001111110000        000       00011135778999999999999999999999988654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.0046  Score=56.48  Aligned_cols=99  Identities=9%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             CCEEEEecCC--e-EEEEeCC---CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CC-cEEEEEe
Q psy12788          9 PPYALSWPAG--Y-ILAAGSD---RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YD-NIKLFAW   79 (254)
Q Consensus         9 ~v~~l~w~~~--~-l~s~s~D---~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d-~i~l~d~   79 (254)
                      ......|+|+  . ++..+.+   ..|.++| .+|+.. .+.     ..+......+|||||+.++... .+ .-.||-+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt-----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIA-----SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEe-----cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            5677899984  3 5544443   4588888 556543 221     1234566788999998877543 23 2345544


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~  117 (254)
                      +...+.+..  .  ..+........|||||+.|+..+.
T Consensus       263 dl~~g~~~~--L--T~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        263 DTNTKTLTQ--I--TNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             ECCCCcEEE--c--ccCCCccCccEECCCCCEEEEEEC
Confidence            333333222  1  111122345689999998887663

>KOG2041|consensus

Probab=98.01  E-value=0.0012  Score=62.29  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEe-----CCCCEE-----EE--eeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYE-----SDGRVH-----RI--FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-----~~g~~~-----~~--~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      ....+++|+.  .+|+.||.||.++|-.     .+++..     .+  +...++ ||...|..+.|+.+.+.|-+...++
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCCc
Confidence            3467899986  5899999999999984     122111     11  112345 8999999999999999888777777


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL  123 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~i  123 (254)
                       |.+|-  .-++.|-+. .....+...|.+++|+.||+.|+..=.||.|.+
T Consensus        94 lIiVWm--lykgsW~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   94 LIIVWM--LYKGSWCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             eEEEEe--eecccHHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence             56665  446777441 222334568999999999999887777777643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.01  E-value=0.0016  Score=55.14  Aligned_cols=188  Identities=10%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             EEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCC-C-CCCCEEEEEECCCC-------CEEEEEeCCcEEEEEe
Q psy12788         11 YALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPH-Y-KEREFTVACSSPSG-------QAVVVGSYDNIKLFAW   79 (254)
Q Consensus        11 ~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~-~-~~~~v~~~a~sPdg-------~~la~gs~d~i~l~d~   79 (254)
                      ..|+|+|+  .||.+..-++|+++|..|..+..+.-.... + -...|..+.|-+--       ++|+......++-|-+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            46899996  688888889999999888777554311100 0 12456667675422       3444443333565554


Q ss_pred             cCCC-cceeecCceec--CCCCcEeEEEEecCCCeEEEeecCC-----------cEEEEeeeeeeeEeeceeEE-EEecC
Q psy12788         80 SPSK-SVWEEQPNKTI--PNLYTISALSWKRDGSRIACGGLCG-----------SVELFESVLKRTIWKGKFEM-IYVSP  144 (254)
Q Consensus        80 ~~~~-~~~~~~~~~~~--~~~~~i~~l~~spdG~~la~g~~dg-----------~v~iwd~~~~~~~~~~~~~~-~~~~~  144 (254)
                      ...+ +...+.-...+  .....|+++.|+|.-++|.+|+...           .+.-|.+     +.+.+|-. ....+
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi-----L~~~Pyyk~v~~~~  201 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI-----LSDSPYYKQVTSSE  201 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE-----cCCCCcEEEccccC
Confidence            3221 11111101111  1245899999999988888777422           1233332     22223221 11221


Q ss_pred             CeE-------EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCCcEEEEeccCCceeeEeCC
Q psy12788        145 SQV-------LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPDTLLLGDLHRNLLSEVLWP  207 (254)
Q Consensus       145 ~~~-------~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~~i~i~dl~~~~~~~~~~~  207 (254)
                      .++       -++.+.+.   ............|.++.+||++.+++ .+.++.|.+|++.+-++. -.|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~-~~W~  268 (282)
T PF15492_consen  202 DDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ-RSWK  268 (282)
T ss_pred             ccccccccccceeeccce---eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh-cccc
Confidence            111       11122111   11111123355799999999997655 678999999999875432 3454

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.0032  Score=57.57  Aligned_cols=88  Identities=10%  Similarity=0.053  Sum_probs=49.1

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeCC--c--EEEEEecCCCcceeecCceecCCCCcEeE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYD--N--IKLFAWSPSKSVWEEQPNKTIPNLYTISA  102 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d--~--i~l~d~~~~~~~~~~~~~~~~~~~~~i~~  102 (254)
                      .|.+-|.+|...+.+.     .. .......|||||+. ++..+.+  .  +.++|..  .+.-..  .  ....+....
T Consensus       170 ~l~~~d~dg~~~~~~~-----~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~--tg~~~~--l--t~~~g~~~~  237 (419)
T PRK04043        170 NIVLADYTLTYQKVIV-----KG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY--TGKKEK--I--ASSQGMLVV  237 (419)
T ss_pred             eEEEECCCCCceeEEc-----cC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECC--CCcEEE--E--ecCCCcEEe
Confidence            4555467776454442     12 36778999999985 6655544  2  4455543  221111  1  112334567


Q ss_pred             EEEecCCCeEEEee-cCC--cEEEEeee
Q psy12788        103 LSWKRDGSRIACGG-LCG--SVELFESV  127 (254)
Q Consensus       103 l~~spdG~~la~g~-~dg--~v~iwd~~  127 (254)
                      ..|||||+.|+... .++  .|.++|+.
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            88999999887544 233  34444543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.98  E-value=0.0037  Score=55.61  Aligned_cols=172  Identities=10%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             CCCcEEEEe-CCCCEEEEeeecCCCCC---CCCEEEEEECCCCCEEEEEeCC---cEEEEEecCCCcceeec--------
Q psy12788         25 SDRIVTIYE-SDGRVHRIFDYTAPHYK---EREFTVACSSPSGQAVVVGSYD---NIKLFAWSPSKSVWEEQ--------   89 (254)
Q Consensus        25 ~D~~i~vWd-~~g~~~~~~~~~~~~~~---~~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~~~~~~~--------   89 (254)
                      .+..|.+|| .+++.+..+....+ ++   .......++||||+++.+..++   .+-+.|...++-.-+..        
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~-p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEG-PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCC-chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            477899999 88888877763221 11   1234478999999998887644   37788865433211100        


Q ss_pred             --------------Ccee---------cCCCCcEeEE---------EEec-CCCeEEEeecCCcEEEEee-----eeeee
Q psy12788         90 --------------PNKT---------IPNLYTISAL---------SWKR-DGSRIACGGLCGSVELFES-----VLKRT  131 (254)
Q Consensus        90 --------------~~~~---------~~~~~~i~~l---------~~sp-dG~~la~g~~dg~v~iwd~-----~~~~~  131 (254)
                                    ....         .....++..-         .|+| ||+++.+... |.|.+.|+     ...+.
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~  232 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA  232 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence                          0000         0000011000         3455 8888887776 99999993     22221


Q ss_pred             Eee------------ceeE-EE--------Ee-c-----------CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec
Q psy12788        132 IWK------------GKFE-MI--------YV-S-----------PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG  178 (254)
Q Consensus       132 ~~~------------~~~~-~~--------~~-~-----------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~  178 (254)
                      ...            +-++ +.        |+ .           .+.+-+.|..+.+    ..-+-..|.++..|++++
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~vG~~~~~iavS~  308 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIELGHEIDSINVSQ  308 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeCCCceeeEEECC
Confidence            110            0000 11        22 1           1356677777763    223334578999999999


Q ss_pred             CcE-EEE-EE-CCCcEEEEeccCCcee
Q psy12788        179 NDR-YLV-AR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       179 ~~~-~~v-~~-~d~~i~i~dl~~~~~~  202 (254)
                      +++ ++. +. .++.+.+.|+.+++..
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            887 443 33 4778999999999764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280|consensus

Probab=97.98  E-value=5.7e-05  Score=64.02  Aligned_cols=115  Identities=11%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             ccccCCCCCEEEEec---CCeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCC-cE
Q psy12788          2 RVVQHPVPPYALSWP---AGYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYD-NI   74 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~---~~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d-~i   74 (254)
                      .+..|.....-..|+   |+.+.+||.|+.+..|| + .++.+  + ...+ .|...|.++.-+| .+.++++|++| .+
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i--~-~n~k-vH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI--W-HNSK-VHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee--e-ecce-eeecceEEEecCCCCCceEEEeccccce
Confidence            456788888888875   57899999999999999 4 33443  1 1233 6888899998886 58899999999 59


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEee
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFES  126 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~  126 (254)
                      ++||.+...+   .  ...-+..+.|..+.++|--  +.||+ +.-...+|-+.
T Consensus       236 ~~~DtRnm~k---P--l~~~~v~GGVWRi~~~p~~~~~lL~~-CMh~G~ki~~~  283 (339)
T KOG0280|consen  236 RVLDTRNMGK---P--LFKAKVGGGVWRIKHHPEIFHRLLAA-CMHNGAKILDS  283 (339)
T ss_pred             eeeehhcccC---c--cccCccccceEEEEecchhhhHHHHH-HHhcCceEEEe
Confidence            9999532221   1  2222334789999999963  33443 33334455554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.97  E-value=0.0011  Score=54.96  Aligned_cols=173  Identities=19%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCccee-ecCce
Q psy12788         16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWE-EQPNK   92 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~-~~~~~   92 (254)
                      ....+++++.++.+..|| .+|+.+..+....  .....    .. .++..+.+++.+ .++.+|....+..|. .... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~----~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-  106 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGA----PV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS-  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSG----EE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-S-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccce----ee-ecccccccccceeeeEecccCCcceeeeecccc-
Confidence            445778888999999999 6999887765311  11111    11 234455555555 477888777777786 2111 


Q ss_pred             ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-----------------E------EEEe--cCCeE
Q psy12788         93 TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-----------------E------MIYV--SPSQV  147 (254)
Q Consensus        93 ~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-----------------~------~~~~--~~~~~  147 (254)
                       .+........+...+|..++++..++.+..+|..+++.++....                 .      ..|.  .++.+
T Consensus       107 -~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~  185 (238)
T PF13360_consen  107 -SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRV  185 (238)
T ss_dssp             -SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSE
T ss_pred             -ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeE
Confidence             11111222334444588889999899999999887776543210                 0      0111  12222


Q ss_pred             EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ...|+.++   ... .... -..+..+....++.+++++.++.+..+|+++|++.
T Consensus       186 ~~~d~~tg---~~~-w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  186 VAVDLATG---EKL-WSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEETTTT---EEE-EEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEEECCCC---CEE-EEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            33366666   222 2222 22233311222345566667888888998888853

...

>KOG2066|consensus

Probab=97.96  E-value=0.00096  Score=63.45  Aligned_cols=101  Identities=18%  Similarity=0.313  Sum_probs=70.3

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC-----CCEEEEEeCCcEEEEEecCCCcceeec--
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS-----GQAVVVGSYDNIKLFAWSPSKSVWEEQ--   89 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-----g~~la~gs~d~i~l~d~~~~~~~~~~~--   89 (254)
                      .+++|||.||+|.|-. -+++...++++      ..++.+++++|+     .+.+++|+.-++.++.     +.|-..  
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~df------~rpiksial~Pd~~~~~sk~fv~GG~aglvL~e-----r~wlgnk~  152 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYDF------KRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSE-----RNWLGNKD  152 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEec------CCcceeEEeccchhhhhhhheeecCcceEEEeh-----hhhhcCcc
Confidence            4799999999999986 45555544432      357999999998     5678888877764554     233211  


Q ss_pred             CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE
Q psy12788         90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI  132 (254)
Q Consensus        90 ~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~  132 (254)
                      ........++|.++.|  .|++||=++.+| |++||+..++.+
T Consensus       153 ~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRL  192 (846)
T ss_pred             ceeeecCccceEEEEe--cCcEEEEecCCC-cEEEecccccee
Confidence            0112234579999999  688999888555 789998766544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.90  E-value=0.015  Score=52.00  Aligned_cols=214  Identities=13%  Similarity=0.156  Sum_probs=113.2

Q ss_pred             CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceec
Q psy12788         17 AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      .+.++.++.|+.+..+| .+|+.+.....      ...+.+...- .+..+.+++.++ +..+|....+..|+.......
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeecc------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence            34677888899999999 68888754431      1222211111 234555566564 788887766777764211000


Q ss_pred             CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-------------------------EEEEecCCeEEE
Q psy12788         95 PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-------------------------EMIYVSPSQVLV  149 (254)
Q Consensus        95 ~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~~~v  149 (254)
                      .......+... .+ ..+..+..+|.+..+|..+++.++...+                         ......++.+..
T Consensus       178 ~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       178 LTLRGSASPVI-AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eeecCCCCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            00000011111 13 4667788888898888877765543111                         111122456667


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCC-CceeE---EeeCceEEEE
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSG-RNEKF---YFDNVTVCLV  225 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~-g~~~~---~~~~~~~~~~  225 (254)
                      +|..+++    .......+ ......+. ++.+++++.++.+..+|..+|+.   .|+... +...+   ...+..+.+.
T Consensus       256 ~d~~tG~----~~W~~~~~-~~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~---~W~~~~~~~~~~ssp~i~g~~l~~~  326 (377)
T TIGR03300       256 LDLRSGR----VLWKRDAS-SYQGPAVD-DNRLYVTDADGVVVALDRRSGSE---LWKNDELKYRQLTAPAVVGGYLVVG  326 (377)
T ss_pred             EECCCCc----EEEeeccC-CccCceEe-CCEEEEECCCCeEEEEECCCCcE---EEccccccCCccccCEEECCEEEEE
Confidence            7777663    11211111 12233333 35677777889999999999874   354211 11111   1223333333


Q ss_pred             EeCCeeEEEEeecCeeeeeeecC
Q psy12788        226 FNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       226 ~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      -..|.+.+++....+++.+.++.
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~~~~  349 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARLKTD  349 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcC
Confidence            33477777776667777776653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532|consensus

Probab=97.88  E-value=0.0025  Score=53.77  Aligned_cols=182  Identities=12%  Similarity=0.051  Sum_probs=97.2

Q ss_pred             CeEEEEeCCCcEEEEeCC--CCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788         18 GYILAAGSDRIVTIYESD--GRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd~~--g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~~~~~~~~~~~~~~   93 (254)
                      ..|+.||.-+...+|..+  ...++..    + .|...|+-+.=.-|.+ -+..++.|. +++.+++......    ...
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~c----d-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~----~~h  155 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQC----D-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF----AVH  155 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeee----c-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----eee
Confidence            369999999999999833  2223222    2 3333222111111111 234456664 7777765332211    111


Q ss_pred             cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeE
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITD  173 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~  173 (254)
                      .++ -.+.++++|||++++++.+....|..|.+-.     ++.|..      .+.+.+...+               =..
T Consensus       156 ~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~-----~sey~~------~~~~a~t~D~---------------gF~  208 (344)
T KOG4532|consen  156 NQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD-----ESEYIE------NIYEAPTSDH---------------GFY  208 (344)
T ss_pred             ccc-cceeeeEEcCCCceEEEecCCCcceEEEeCC-----ccceee------eeEecccCCC---------------cee
Confidence            111 2488999999999999999888887775420     011100      0011111111               123


Q ss_pred             EEEecC-cEEEEEECCCcEEEEeccCCce-----eeEeCCCCCCc---eeEEeeCceEEEEEeCC--eeEEEEe
Q psy12788        174 VAIMGN-DRYLVARTPDTLLLGDLHRNLL-----SEVLWPDSGRN---EKFYFDNVTVCLVFNAG--ELSIIEY  236 (254)
Q Consensus       174 i~~~~~-~~~~v~~~d~~i~i~dl~~~~~-----~~~~~~~~~g~---~~~~~~~~~~~~~~~~g--~~~~~~~  236 (254)
                      ..|+.. ..|+++..|+++.|||++.-.+     +.-+.+ +.|.   .+|.+.++...++++.+  -+.+++.
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence            445543 4799999999999999986432     223333 3343   45665666666666663  3444443

>KOG1409|consensus

Probab=97.82  E-value=0.00031  Score=60.82  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +|.+.+++++|.|....|-+|..| .+.+||+-.++..-    .....+...|.++..-+--+.|.+++.||.|.+||..
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA----YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee----eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            799999999999999999999988 57899975444322    1223455678888888888999999999999999975


Q ss_pred             eee
Q psy12788        128 LKR  130 (254)
Q Consensus       128 ~~~  130 (254)
                      ..|
T Consensus       271 ~~r  273 (404)
T KOG1409|consen  271 VKR  273 (404)
T ss_pred             cee
Confidence            443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.0012  Score=64.16  Aligned_cols=138  Identities=16%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC--------CEEEEEeCCcEEEEEecCCCcc--eeecC
Q psy12788         22 AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG--------QAVVVGSYDNIKLFAWSPSKSV--WEEQP   90 (254)
Q Consensus        22 s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg--------~~la~gs~d~i~l~d~~~~~~~--~~~~~   90 (254)
                      .......++-.| ..|+.+..++...    ..+|  ..|-|+.        +.|+--+.+++-.||.+.....  +..  
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~----~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~--  570 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHD----DIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ--  570 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCC----Ccce--eEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc--
Confidence            334456677778 7889888876321    1224  3444532        2333223345656665433221  111  


Q ss_pred             ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCc
Q psy12788         91 NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYE  170 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~  170 (254)
                      .+........++++=+.+| +||+|+.+|.||+||.. ++.                           .+ .+....|.+
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~---------------------------AK-T~lp~lG~p  620 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR---------------------------AK-TALPGLGDP  620 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chh---------------------------hh-hcCCCCCCC
Confidence            2222233467888888887 68999999999999942 210                           00 111245789


Q ss_pred             eeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        171 ITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       171 i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      |..|.++.+++|++|.++.-|+|.|..
T Consensus       621 I~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  621 IIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             eeEEEecCCCcEEEEeecceEEEEEEe
Confidence            999999999999999999999999864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.68  E-value=0.035  Score=49.31  Aligned_cols=159  Identities=13%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             EEEEeCC----CcEEEEe---CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC---C--cEEEEEecCCCccee
Q psy12788         20 ILAAGSD----RIVTIYE---SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY---D--NIKLFAWSPSKSVWE   87 (254)
Q Consensus        20 l~s~s~D----~~i~vWd---~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~---d--~i~l~d~~~~~~~~~   87 (254)
                      ++.|+..    +.|.+|+   .+|++. .+...   ........++++|++++|-+...   +  .+..|.+......++
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~-~~~~~---~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLT-LVQTV---AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEE-EEEEE---EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCce-Eeeee---cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence            4556665    5788885   344432 22111   11234667899999998877655   3  377888776544443


Q ss_pred             ecCceecC-CCCcEeEEEEecCCCeEEEeec-CCcEEEEeeee-eeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEE
Q psy12788         88 EQPNKTIP-NLYTISALSWKRDGSRIACGGL-CGSVELFESVL-KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILK  164 (254)
Q Consensus        88 ~~~~~~~~-~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  164 (254)
                      ..  .... .-.....++.+|||++|+++.. +|.|.++++.. +++..... ...+.+.      .....         
T Consensus        78 ~~--~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-~~~~~g~------g~~~~---------  139 (345)
T PF10282_consen   78 LL--NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-TVRHEGS------GPNPD---------  139 (345)
T ss_dssp             EE--EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-EEESEEE------ESSTT---------
T ss_pred             Ee--eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-ecccCCC------CCccc---------
Confidence            32  1122 2234456999999999999985 88999998753 22221100 0000000      00000         


Q ss_pred             ecCCCceeEEEEecCcEEEEEE--CCCcEEEEeccCCc
Q psy12788        165 SQYGYEITDVAIMGNDRYLVAR--TPDTLLLGDLHRNL  200 (254)
Q Consensus       165 s~~~~~i~~i~~~~~~~~~v~~--~d~~i~i~dl~~~~  200 (254)
                      ...+.....+.++|+++++...  ..+.|.++++....
T Consensus       140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            0112346788899887755433  25588888887654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064|consensus

Probab=97.68  E-value=0.00034  Score=71.59  Aligned_cols=145  Identities=14%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             CCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-
Q psy12788         52 REFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-  129 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-  129 (254)
                      ..|.++.=||.-.+.++|+.|+ +++|.|....+....   ... ...+|+.+.|+.+|+.+..+..||.+-+|.+.-+ 
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~---rt~-g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF---RTA-GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe---ecc-CcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence            4688888899999999999997 999999765554321   122 2378999999999999999999999999987411 


Q ss_pred             ----eeEeeceeEEEEe-----------cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEE
Q psy12788        130 ----RTIWKGKFEMIYV-----------SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLL  193 (254)
Q Consensus       130 ----~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i  193 (254)
                          ++-.++...+.|+           .+..+.+||.--..  ..-.+...|.+.++++++.|+-+ ++.|+.++.++|
T Consensus      2285 ~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~--~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPP--MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCc--ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence                1111111112221           13367788754322  33444466777899999999776 567888999999


Q ss_pred             EeccCCcee
Q psy12788        194 GDLHRNLLS  202 (254)
Q Consensus       194 ~dl~~~~~~  202 (254)
                      ||++.+++.
T Consensus      2363 ~D~rqrql~ 2371 (2439)
T KOG1064|consen 2363 FDIRQRQLR 2371 (2439)
T ss_pred             eehHHHHHH
Confidence            999987753

>KOG4714|consensus

Probab=97.66  E-value=0.00034  Score=58.52  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=56.2

Q ss_pred             CCEEEEEECCCCC-EEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeee
Q psy12788         52 REFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        52 ~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~  128 (254)
                      ..|++++-+|..+ +++.|+.|+ +-+||++.....    ....+.|+.+|..+.|+| ++..|.+++.||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4599999999755 566777887 789998643221    123345778999999999 588999999999999999753

>KOG4714|consensus

Probab=97.65  E-value=0.00024  Score=59.43  Aligned_cols=147  Identities=16%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE------eCCcEEEEEecCCCcceeecC
Q psy12788         17 AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG------SYDNIKLFAWSPSKSVWEEQP   90 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g------s~d~i~l~d~~~~~~~~~~~~   90 (254)
                      .+.++++..|+.+.+.+.+.  ...++.+....|.... +...-..++.+.++      ..|..++|++++.+...    
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~----  173 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI----  173 (319)
T ss_pred             CCceEecCCCceEEEEechH--HHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeeccccccccc----
Confidence            35799999999999987221  1111111100111111 11111234555444      33444566654432211    


Q ss_pred             ceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCC
Q psy12788         91 NKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY  169 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~  169 (254)
                       ........|++++-+|-- ..+++|+.||.+.+||.+....                            ...+-..+..
T Consensus       174 -~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------------------p~S~l~ahk~  224 (319)
T KOG4714|consen  174 -PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------------------PVSLLKAHKA  224 (319)
T ss_pred             -ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------------------hHHHHHHhhh
Confidence             111122359999999964 5677888999999999853210                            0111112356


Q ss_pred             ceeEEEEecCc--EEEEEECCCcEEEEeccCC
Q psy12788        170 EITDVAIMGND--RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       170 ~i~~i~~~~~~--~~~v~~~d~~i~i~dl~~~  199 (254)
                      +|..|-|+|.+  .+++++.|+.+.-||..+.
T Consensus       225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             hhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            89999999854  6999999999999998763

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.60  E-value=0.005  Score=45.24  Aligned_cols=64  Identities=23%  Similarity=0.333  Sum_probs=45.3

Q ss_pred             EEEEEECC---CC-CEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         54 FTVACSSP---SG-QAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        54 v~~~a~sP---dg-~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      |+++++.+   || +.|++||.|. ||+|+    ....    ..++.....|+++.-... .+++.|-.+|+|.+|+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~----~~e~----~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK----GDEI----VAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe----CCcE----EEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            45555543   44 4688999995 99998    2211    234445567888887776 66899999999999985

>KOG0882|consensus

Probab=97.57  E-value=0.00018  Score=64.19  Aligned_cols=183  Identities=13%  Similarity=0.031  Sum_probs=110.7

Q ss_pred             cCCCCCEEEEecC-CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-EEEEEecC
Q psy12788          5 QHPVPPYALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i~l~d~~~   81 (254)
                      -|...|+.|.-.. +.+.+||.|+.+++|-+.......+-.... .|...|.+++.+-+|-++++.+. |. +|++|+..
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            4777788887764 689999999999999844311212211111 47778899999999999999776 75 88887643


Q ss_pred             CCc-------------ceeecC------------------------------ceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         82 SKS-------------VWEEQP------------------------------NKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        82 ~~~-------------~~~~~~------------------------------~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      ..-             .|....                              .....|..+|..+-++|-|..+.+....
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            210             110000                              0001134578888888888888888888


Q ss_pred             CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEecc
Q psy12788        119 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLH  197 (254)
Q Consensus       119 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~  197 (254)
                      |.|.-|...- .      |    .-+..-.-|.+.+.   ..+.-.........++.|++++..+ .-+.|..+++.++.
T Consensus       166 gmVEyWs~e~-~------~----qfPr~~l~~~~K~e---TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  166 GMVEYWSAEG-P------F----QFPRTNLNFELKHE---TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             ceeEeecCCC-c------c----cCcccccccccccc---chhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence            8888887531 0      0    00111111222221   1111111123457788999887544 45578899999999


Q ss_pred             CCcee
Q psy12788        198 RNLLS  202 (254)
Q Consensus       198 ~~~~~  202 (254)
                      +|++.
T Consensus       232 tGklv  236 (558)
T KOG0882|consen  232 TGKLV  236 (558)
T ss_pred             cchhh
Confidence            99753

>KOG1354|consensus

Probab=97.55  E-value=0.001  Score=57.73  Aligned_cols=169  Identities=14%  Similarity=0.149  Sum_probs=100.2

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEeCC--CC----EEEEee-------ecCCCCCCCCEEEEEECCCCCE--EEEEe
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYESD--GR----VHRIFD-------YTAPHYKEREFTVACSSPSGQA--VVVGS   70 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd~~--g~----~~~~~~-------~~~~~~~~~~v~~~a~sPdg~~--la~gs   70 (254)
                      .-+.++.|+.  ++|++|..+|.|.++..+  .+    ....+.       |-....-...|..+.|.++++.  +....
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            3567888864  689999999999999622  11    111221       1000001346889999988753  44444


Q ss_pred             CC-cEEEEEecCCCccee-----------------e--------------cCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         71 YD-NIKLFAWSPSKSVWE-----------------E--------------QPNKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        71 ~d-~i~l~d~~~~~~~~~-----------------~--------------~~~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      .| .+++|.+..+....+                 .              .+.....|.+-|++++++.|+..+.++. |
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence            45 599998754322110                 0              0001112456799999999999998776 7


Q ss_pred             CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc--EEEEEECCCcEEEEec
Q psy12788        119 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND--RYLVARTPDTLLLGDL  196 (254)
Q Consensus       119 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~--~~~v~~~d~~i~i~dl  196 (254)
                      =.|.+|.+.              ..++..-|.|+.+.+.       .....-|++-.|+|..  .|+=.++.++|+|+||
T Consensus       185 LRINLWnle--------------i~d~sFnIVDIKP~nm-------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  185 LRINLWNLE--------------IIDQSFNIVDIKPANM-------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eeeeecccc--------------ccCCceeEEEccccCH-------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            778888864              2233334455544320       0001236677788754  3444666889999999


Q ss_pred             cC
Q psy12788        197 HR  198 (254)
Q Consensus       197 ~~  198 (254)
                      +.
T Consensus       244 R~  245 (433)
T KOG1354|consen  244 RQ  245 (433)
T ss_pred             hh
Confidence            83

>KOG1912|consensus

Probab=97.55  E-value=0.016  Score=55.39  Aligned_cols=116  Identities=15%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             CEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC------C-----C-EEEEEeCCc-EE
Q psy12788         10 PYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS------G-----Q-AVVVGSYDN-IK   75 (254)
Q Consensus        10 v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd------g-----~-~la~gs~d~-i~   75 (254)
                      -.+++|++..|++=+.-..|.+-| .+-+.++++.     -|+..|+.+.|.|-      +     + +||++...+ |.
T Consensus        18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-----~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-----LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccCccceEEEecCceEEEEehhhhhhhhccc-----cCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            567899987555555566788889 7777777665     57788999999982      1     1 345555444 88


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEe---cCC-CeEEEeecCCcEEEEeeeeeeeEeec
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWK---RDG-SRIACGGLCGSVELFESVLKRTIWKG  135 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s---pdG-~~la~g~~dg~v~iwd~~~~~~~~~~  135 (254)
                      +||+.......     ...++..++..+.|=   +|. ..|++-.....+.+|+..+|...++.
T Consensus        93 l~d~~~~s~~~-----~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   93 LVDFVLASVIN-----WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             EEEehhhhhhh-----hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence            99976543321     112234567777774   355 45666677889999999888877654

>KOG4640|consensus

Probab=97.54  E-value=0.00034  Score=64.85  Aligned_cols=78  Identities=15%  Similarity=0.270  Sum_probs=60.6

Q ss_pred             CCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         52 REFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      -.+.-+.|+|.-.++|.+..++ +-++.++ -.+.|..    .+++.....+++|.|||+.||+|-.||+|++.|+..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti----p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI----PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec----cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            4688899999999999998886 7677765 4566643    22333333599999999999999999999999998765


Q ss_pred             eEee
Q psy12788        131 TIWK  134 (254)
Q Consensus       131 ~~~~  134 (254)
                      .+..
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            5543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.53  E-value=0.0087  Score=43.99  Aligned_cols=89  Identities=16%  Similarity=0.331  Sum_probs=60.3

Q ss_pred             CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         18 GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      +.|++||.|..||+|+.+ +.+..+.      ....|++++-.+. ..|+-|-.++ +.+|+  ...+.|..      +.
T Consensus        16 ~eLlvGs~D~~IRvf~~~-e~~~Ei~------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~--~~~RlWRi------KS   79 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD-EIVAEIT------ETDKVTSLCSLGG-GRFAYALANGTVGVYD--RSQRLWRI------KS   79 (111)
T ss_pred             ceEEEecCCcEEEEEeCC-cEEEEEe------cccceEEEEEcCC-CEEEEEecCCEEEEEe--Ccceeeee------cc
Confidence            469999999999999833 5564443      2356888887776 5688888775 88888  34556642      23


Q ss_pred             CCcEeEEEEec---CCC-eEEEeecCCcEE
Q psy12788         97 LYTISALSWKR---DGS-RIACGGLCGSVE  122 (254)
Q Consensus        97 ~~~i~~l~~sp---dG~-~la~g~~dg~v~  122 (254)
                      ...++++.+..   ||. -|++|=.+|.|-
T Consensus        80 K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33466666644   332 578888888773

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.53  E-value=0.061  Score=48.11  Aligned_cols=164  Identities=12%  Similarity=0.191  Sum_probs=95.3

Q ss_pred             CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCE-EEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788         17 AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREF-TVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v-~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~   93 (254)
                      .+.++.++.++.+.-+| .+|+.+..+...      ..+ ...+.  ++..+.+++.++ +..+|....+..|...    
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~------~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~----  132 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLD------ERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAK----  132 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCC------CCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeec----
Confidence            45788888999999999 789888655321      111 12222  466677777775 7778866666677541    


Q ss_pred             cCCCCcEeE-EEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-------------------EEEEecCCeEEEEeCC
Q psy12788         94 IPNLYTISA-LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-------------------EMIYVSPSQVLVKPLS  153 (254)
Q Consensus        94 ~~~~~~i~~-l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~v~~~~  153 (254)
                      ..  ..+.+ ...  ++..+..++.+|.+..||..+++.++....                   .+....++.+...|..
T Consensus       133 ~~--~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       133 LS--SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             cC--ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEcc
Confidence            11  11111 111  345677788899999999888776553211                   0111223566666776


Q ss_pred             CCCceeeEEEEecCCC-----c------e-eEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        154 GESKGRGVILKSQYGY-----E------I-TDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~-----~------i-~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      +|.    ...+...+.     .      + ....+. ++.+++++.++.+..+|+.+|+.
T Consensus       209 tG~----~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       209 TGQ----PLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             CCC----EeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcE
Confidence            663    111111000     0      0 011222 35667777889999999999875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.49  E-value=0.0014  Score=59.54  Aligned_cols=127  Identities=11%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             CCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         51 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      .-++..+.|||.|.+|++....+|.+|.-    ..|..  ...+.| ..|..+.|||.|+||.+=+....+         
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g----~~~~~--l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~---------   95 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAGVECWGG----PSKAK--LVRFRH-PDVKYLDFSPNEKYLVTWSREPII---------   95 (561)
T ss_pred             CcchhheeecCcchheehhhccceEEccc----cchhh--eeeeec-CCceecccCcccceeeeeccCCcc---------
Confidence            35788999999999999877778989983    33321  222333 358899999999999864433221         


Q ss_pred             eEeeceeEE-EEecCCeEEEEeCCCCCceeeEEEEecCC--Cc--ee-EEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        131 TIWKGKFEM-IYVSPSQVLVKPLSGESKGRGVILKSQYG--YE--IT-DVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       131 ~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--~~--i~-~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                         +-..+. -+...+++.+||.++|.     .+.+..+  .+  .. -+.|+-+|.|++=--.+.++|.++ ++.+.
T Consensus        96 ---~pe~e~sp~~~~n~~~vwd~~sg~-----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~  164 (561)
T COG5354          96 ---EPEIEISPFTSKNNVFVWDIASGM-----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIE  164 (561)
T ss_pred             ---ChhhccCCccccCceeEEeccCce-----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccc
Confidence               101111 12234467788888772     2222211  11  22 345565566654334567888887 55433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.48  E-value=0.0025  Score=61.98  Aligned_cols=100  Identities=17%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             eEEEEeCCCcEEEEe-C-CCCE-EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceec
Q psy12788         19 YILAAGSDRIVTIYE-S-DGRV-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~-~g~~-~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      ....|=.++.+..|| + .|+. +..-.+..  ......+|+|=+.+| +||+||.++ |||||- ...+     ....+
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~-----AKT~l  614 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKR-----AKTAL  614 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeecccccc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchh-----hhhcC
Confidence            456666778899999 3 4533 22111111  133568889888888 688999997 999992 1111     12334


Q ss_pred             CC-CCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         95 PN-LYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        95 ~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      +. -.+|..|.-+.||++|++.| +..+.++++..
T Consensus       615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~  648 (794)
T PF08553_consen  615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTLI  648 (794)
T ss_pred             CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEee
Confidence            44 35999999999999987554 77788888753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920|consensus

Probab=97.46  E-value=0.0079  Score=59.85  Aligned_cols=108  Identities=17%  Similarity=0.265  Sum_probs=68.2

Q ss_pred             EEEEecC--CeEEEE----eCC-CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEE----eCCcEEEEEe
Q psy12788         11 YALSWPA--GYILAA----GSD-RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVG----SYDNIKLFAW   79 (254)
Q Consensus        11 ~~l~w~~--~~l~s~----s~D-~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~g----s~d~i~l~d~   79 (254)
                      ..+.|-.  +++|+.    -.| ++|+|||++|.+..+    .. +..+.=.+++|-|.|..+|+-    +.+.|.+|. 
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~----se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-  272 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNST----SE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-  272 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcc----cC-cccccccceeecCCCCeEeeeeecCCCCcEEEEe-
Confidence            3588865  355542    335 899999977754311    11 233445689999999999983    334576776 


Q ss_pred             cCCCcceeec--CceecCCCCcEeEEEEecCCCeEEE---eecCCcEEEEeee
Q psy12788         80 SPSKSVWEEQ--PNKTIPNLYTISALSWKRDGSRIAC---GGLCGSVELFESV  127 (254)
Q Consensus        80 ~~~~~~~~~~--~~~~~~~~~~i~~l~~spdG~~la~---g~~dg~v~iwd~~  127 (254)
                         ++.....  .........+|..++|+.++..||+   ......|++|-..
T Consensus       273 ---rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  273 ---RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ---cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence               2222211  0112223345999999999999998   4455559999753

>KOG4640|consensus

Probab=97.43  E-value=0.00097  Score=61.94  Aligned_cols=92  Identities=17%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             CCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEE-EEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          6 HPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFT-VACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         6 h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~-~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      -+..+.-+.|+|  +.||.+.+++.+.+.-.+-+.+.+++.     +..+++ +++|.|||++||+|-.|+ +++.|...
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~-----p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPI-----PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccC-----CCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            355678899999  579999999999888755566666642     334555 999999999999999996 99999765


Q ss_pred             CCcceeecCceecCCCCcEeEEEEe
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWK  106 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~s  106 (254)
                      ....-..    ..-....|+.+-|+
T Consensus        94 ~~~l~~~----~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   94 GGRLVSF----LFSVETDISKGIWD  114 (665)
T ss_pred             CCceecc----ccccccchheeecc
Confidence            4432111    01123357777776

>KOG2395|consensus

Probab=97.42  E-value=0.0037  Score=57.26  Aligned_cols=140  Identities=16%  Similarity=0.277  Sum_probs=89.1

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCE--EE-----EEeCC-cEEEEEecCCCc---cee
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA--VV-----VGSYD-NIKLFAWSPSKS---VWE   87 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~--la-----~gs~d-~i~l~d~~~~~~---~~~   87 (254)
                      |.++..-..++=-| +.|+.+..+..     + ..|+-+.+.|+++.  +.     +|-.| ++--||...+..   .|.
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~-----~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKF-----E-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeec-----c-CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            55666656666668 88988877753     2 23888889997642  21     23333 444444332221   122


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecC
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY  167 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  167 (254)
                      +  .+.........|.+=.-+| +||+|+.+|.||+||. +++..                            -...+..
T Consensus       423 q--~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A----------------------------KTAlPgL  470 (644)
T KOG2395|consen  423 Q--SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA----------------------------KTALPGL  470 (644)
T ss_pred             e--ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh----------------------------hhccccc
Confidence            2  2222333455666666666 7899999999999996 22211                            0112345


Q ss_pred             CCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        168 GYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       168 ~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      |.+|.-|.++.++++++|.++..+++-|+.
T Consensus       471 G~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  471 GDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             CCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            889999999999999999999999988765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.33  E-value=0.022  Score=49.48  Aligned_cols=165  Identities=13%  Similarity=0.104  Sum_probs=87.0

Q ss_pred             EEEEe-CCCCEEEEeeecCCCCCCCCEE-EEEECCCCCEEEEEeC-----Cc-EEEEEecCCCcceeecCceecCCCC-c
Q psy12788         29 VTIYE-SDGRVHRIFDYTAPHYKEREFT-VACSSPSGQAVVVGSY-----DN-IKLFAWSPSKSVWEEQPNKTIPNLY-T   99 (254)
Q Consensus        29 i~vWd-~~g~~~~~~~~~~~~~~~~~v~-~~a~sPdg~~la~gs~-----d~-i~l~d~~~~~~~~~~~~~~~~~~~~-~   99 (254)
                      ..+|| .+|+..+.+....    ....+ -..|||||++|.+.-.     .+ |-|||....-..     ..++...+ .
T Consensus        30 ~~v~D~~~g~~~~~~~a~~----gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~r-----i~E~~s~GIG  100 (305)
T PF07433_consen   30 ALVFDCRTGQLLQRLWAPP----GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRR-----IGEFPSHGIG  100 (305)
T ss_pred             EEEEEcCCCceeeEEcCCC----CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEE-----EeEecCCCcC
Confidence            56678 7777776654211    11122 2679999999877421     13 779996521111     22222221 3


Q ss_pred             EeEEEEecCCCeEEEeec------------------CCcEEEEeeeeeeeEeecee-------EE---EEecCCeEE---
Q psy12788        100 ISALSWKRDGSRIACGGL------------------CGSVELFESVLKRTIWKGKF-------EM---IYVSPSQVL---  148 (254)
Q Consensus       100 i~~l~~spdG~~la~g~~------------------dg~v~iwd~~~~~~~~~~~~-------~~---~~~~~~~~~---  148 (254)
                      ...+.+.|||+.|+++..                  +-++...|..+++.+.....       .+   ...+++.+.   
T Consensus       101 PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~  180 (305)
T PF07433_consen  101 PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM  180 (305)
T ss_pred             hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence            456889999988888752                  23344444445544332111       01   111111111   


Q ss_pred             ------------EEeCCCCCceeeEEEE------ecCCCceeEEEEecCcEEEEEECC--CcEEEEeccCCceeeE
Q psy12788        149 ------------VKPLSGESKGRGVILK------SQYGYEITDVAIMGNDRYLVARTP--DTLLLGDLHRNLLSEV  204 (254)
Q Consensus       149 ------------v~~~~~~~~~~~~~l~------s~~~~~i~~i~~~~~~~~~v~~~d--~~i~i~dl~~~~~~~~  204 (254)
                                  +.-...+.  ....+.      ..+.+-|-+|+++.++.++++++.  +.+.+||..++++...
T Consensus       181 Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  181 QYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             ecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence                        11111111  011111      112345889999988877777664  4888999999987533

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.30  E-value=0.023  Score=48.32  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             EEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCC--CCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         57 ACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        57 ~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ++.++||++||+--...+.+-.-...-...  ......+.  ...=..++||||+.+||.+...|+|++||+.
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si--~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~   73 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI--IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM   73 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchhe--eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc
Confidence            567889999987654445443311100000  00111111  1234569999999999999999999999975

>smart00320 WD40 WD40 repeats

Probab=97.26  E-value=0.0012  Score=36.69  Aligned_cols=30  Identities=30%  Similarity=0.346  Sum_probs=26.2

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .|...|+++.|+|+++++++++.|+ +++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            5677899999999999999999886 78875

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2695|consensus

Probab=97.25  E-value=0.0012  Score=57.33  Aligned_cols=162  Identities=12%  Similarity=0.198  Sum_probs=103.0

Q ss_pred             EEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC--Cc
Q psy12788         12 ALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS--KS   84 (254)
Q Consensus        12 ~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~--~~   84 (254)
                      .++|+=+   +=++.|.+..|-+=| .+| ..+.|.      ....|.++-|+-.+.++..|+.++ |-.+|+..+  .+
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg-~~qsf~------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~  288 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETG-HQQSFQ------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN  288 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeecc-cccccc------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC
Confidence            3477632   236677788888888 454 344442      235688999999899999999886 878898643  22


Q ss_pred             ceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      .|.   ...+-|...|+++..=. ++++|.+.+.+|+|.+||.+.-++-.   -..+|.+|.+..               
T Consensus       289 ~~~---a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~~---------------  347 (425)
T KOG2695|consen  289 GWC---AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNLS---------------  347 (425)
T ss_pred             Ccc---eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc---ceeeeecccccc---------------
Confidence            342   23355677888887766 88999999999999999987433210   112233332110               


Q ss_pred             EecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce-eeEeCC
Q psy12788        164 KSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL-SEVLWP  207 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~-~~~~~~  207 (254)
                            +-.-+.+.+.+. .++++.|--.+||.+..|.+ .++++.
T Consensus       348 ------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  348 ------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ------cccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence                  001111222333 44566677889999998875 456554

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.00051  Score=38.33  Aligned_cols=30  Identities=17%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             CCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         96 NLYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      +...|+++.|+|+++++++++.|+.+++||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455799999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832|consensus

Probab=97.18  E-value=0.00028  Score=67.84  Aligned_cols=191  Identities=9%  Similarity=0.085  Sum_probs=118.3

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc--EE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN--IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~--i~   75 (254)
                      .+..|+..-++++|+.  +.|+.|+..|.|++++ .+|......    . .|...|+-+.=+-||.+..+.+ +.+  .-
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~----n-cH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV----N-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc----c-ccccccccccccCCcceeeeeccccCchHH
Confidence            3557888889999986  5899999999999999 778766333    2 7888999999899999876654 333  35


Q ss_pred             EEEecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------cee---EEEEecC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-------GKF---EMIYVSP  144 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-------~~~---~~~~~~~  144 (254)
                      +|+.....         ...|. ..-.++.||..-+.-+.|+....+.+||+.++.....       ..|   ..+|++.
T Consensus      1171 LW~~~s~~---------~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTG---------GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             Hhcccccc---------CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            88853211         11122 2456788988877777788888899999876643211       112   2456665


Q ss_pred             CeEE-----EEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce---------eeEeCCCCC
Q psy12788        145 SQVL-----VKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL---------SEVLWPDSG  210 (254)
Q Consensus       145 ~~~~-----v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~---------~~~~~~~~~  210 (254)
                      .+++     +||+.....   +-....+. --..-.|+|++.-++-.+    .|||++|-++         ..|.|+ ++
T Consensus      1242 D~LIlndGvLWDvR~~~a---Ih~FD~ft-~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~Ldqc~VtFN-st 1312 (1516)
T KOG1832|consen 1242 DTLILNDGVLWDVRIPEA---IHRFDQFT-DYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSLDQCAVTFN-ST 1312 (1516)
T ss_pred             cceEeeCceeeeeccHHH---Hhhhhhhe-ecccccccCCCceEEeec----hhhhhHHHHHHhcCccccceEEEec-cC
Confidence            5544     567765521   10000000 001234566554333322    4799987653         356677 66


Q ss_pred             CceeE
Q psy12788        211 RNEKF  215 (254)
Q Consensus       211 g~~~~  215 (254)
                      |+..|
T Consensus      1313 G~VmY 1317 (1516)
T KOG1832|consen 1313 GDVMY 1317 (1516)
T ss_pred             ccchh
Confidence            76555

>KOG0309|consensus

Probab=97.14  E-value=0.0012  Score=62.37  Aligned_cols=116  Identities=9%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCC-CEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCcEEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDG-RVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDNIKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g-~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~i~l   76 (254)
                      |-+|+..+..+-|.+   +.|++++.|..+..|| ++- ..+-.+.     .-....+.|+|+. ++..+|+.-...+++
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-----~w~s~asqVkwnyk~p~vlasshg~~i~v  184 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-----SWRSAASQVKWNYKDPNVLASSHGNDIFV  184 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-----cccccCceeeecccCcchhhhccCCceEE
Confidence            458999999999986   5799999999999999 443 3442221     1224567889986 455555433334899


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeee
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESV  127 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~  127 (254)
                      ||........    ...+.|...|+.++|+.- -..+.+.+.||+|+.||..
T Consensus       185 wd~r~gs~pl----~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  185 WDLRKGSTPL----CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             EeccCCCcce----EEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            9965432211    112235567788888653 3467788899999999963

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.14  E-value=0.12  Score=43.29  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             CEEEEec-C-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCC-CCCCEEEEEECCCCCEEEEEeCCc-------EEEEE
Q psy12788         10 PYALSWP-A-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHY-KEREFTVACSSPSGQAVVVGSYDN-------IKLFA   78 (254)
Q Consensus        10 v~~l~w~-~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~-~~~~v~~~a~sPdg~~la~gs~d~-------i~l~d   78 (254)
                      +..+++. + ..|+.+..++ +.++| .+|+....+..... . .....+.++++|+|++.++.....       =++|.
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~-~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG-GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT-CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC-CcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5666666 4 4566666654 56669 56644333332111 2 335688999999999887755331       24666


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEE-eecCCcEEEEeeeeeee-EeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC-GGLCGSVELFESVLKRT-IWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~-g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      +... .....    ........+.|+|+|||+.|.+ -+..+.|..++...... ...           ...+.++... 
T Consensus       120 ~~~~-~~~~~----~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~-  182 (246)
T PF08450_consen  120 IDPD-GKVTV----VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN-----------RRVFIDFPGG-  182 (246)
T ss_dssp             EETT-SEEEE----EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE-----------EEEEEE-SSS-
T ss_pred             ECCC-CeEEE----EecCcccccceEECCcchheeecccccceeEEEeccccccceee-----------eeeEEEcCCC-
Confidence            6554 22211    1222345789999999997764 45666776666531111 000           0001112111 


Q ss_pred             ceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCce
Q psy12788        157 KGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLL  201 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~  201 (254)
                                 ......+++..++.+.++. ..+.|.+.|.. |++
T Consensus       183 -----------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~  216 (246)
T PF08450_consen  183 -----------PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL  216 (246)
T ss_dssp             -----------SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred             -----------CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence                       1236678888777766654 56788888877 543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114|consensus

Probab=97.12  E-value=0.25  Score=48.03  Aligned_cols=184  Identities=17%  Similarity=0.167  Sum_probs=106.3

Q ss_pred             CCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCC-EEEEEECCCC-CEEEEEeCC-c-----EEEEEec
Q psy12788          9 PPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKERE-FTVACSSPSG-QAVVVGSYD-N-----IKLFAWS   80 (254)
Q Consensus         9 ~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~-v~~~a~sPdg-~~la~gs~d-~-----i~l~d~~   80 (254)
                      .+.+++-+...++-|+.||.|.+.|..-+.++.|.     .++.. |+.+ +.-++ .+|++-+.| .     +++|+++
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fq-----a~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQ-----AYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccceeeehhe-----ecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEeccc
Confidence            44444433457999999999998885545544443     33333 4333 33344 455554333 2     6899987


Q ss_pred             CCCcce--eec---Cce--ecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEee---eee--eeEe--eceeEE---E--
Q psy12788         81 PSKSVW--EEQ---PNK--TIP-NLYTISALSWKRDGSRIACGGLCGSVELFES---VLK--RTIW--KGKFEM---I--  140 (254)
Q Consensus        81 ~~~~~~--~~~---~~~--~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~---~~~--~~~~--~~~~~~---~--  140 (254)
                      ...+.-  +..   +..  ..+ +..++++++.|.|-+.+|+|-.+|.|..+.-   +.+  |..+  .+...+   .  
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            542211  110   011  112 3468999999999999999999999988741   111  1111  111111   1  


Q ss_pred             -------E-ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        141 -------Y-VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       141 -------~-~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                             | +...++.++.+....  ....+.+.+|...++..+++.-.-+++..+..+.++|....+
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG  246 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence                   1 234456666665321  345555677888999999853332556667789999876544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.08  E-value=0.21  Score=45.04  Aligned_cols=210  Identities=18%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEE-EEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788         17 AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~-~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~   93 (254)
                      .+.++.++.++.+.-+| .+|+.+...+.      ...+.+ .... ++ .+.++..++ +..+|..+.+..|....  .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W~~~~--~  189 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV------AGEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKWTVNL--D  189 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccC------CCceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeecC--C
Confidence            35677788899999999 78988755431      122221 1111 34 444555554 77888777777786521  1


Q ss_pred             cCCC--CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-------------------------EEEEecCCe
Q psy12788         94 IPNL--YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-------------------------EMIYVSPSQ  146 (254)
Q Consensus        94 ~~~~--~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~  146 (254)
                      .+..  ....+-..  .+..+..++.+|.+..+|..+++.++....                         ......++.
T Consensus       190 ~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~  267 (394)
T PRK11138        190 VPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN  267 (394)
T ss_pred             CCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence            1100  00001111  123466677788887777766654432110                         111123455


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCC-ceeE---EeeCceE
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGR-NEKF---YFDNVTV  222 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g-~~~~---~~~~~~~  222 (254)
                      +...|..+|+    ...+...+. ...+.+. ++++++++.++.+...|..+|+.   .|+.+.. ...+   ...+..+
T Consensus       268 l~ald~~tG~----~~W~~~~~~-~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v~~g~l  338 (394)
T PRK11138        268 LVALDLRSGQ----IVWKREYGS-VNDFAVD-GGRIYLVDQNDRVYALDTRGGVE---LWSQSDLLHRLLTAPVLYNGYL  338 (394)
T ss_pred             EEEEECCCCC----EEEeecCCC-ccCcEEE-CCEEEEEcCCCeEEEEECCCCcE---EEcccccCCCcccCCEEECCEE
Confidence            6666776663    222222221 1223333 46777778889999999999874   4542211 1111   1122333


Q ss_pred             EEEEeCCeeEEEEeecCeeeeeeec
Q psy12788        223 CLVFNAGELSIIEYGNNEILTCVRI  247 (254)
Q Consensus       223 ~~~~~~g~~~~~~~~~~~~~~~~~~  247 (254)
                      .+.-..|.+..++....+++...++
T Consensus       339 ~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        339 VVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEc
Confidence            3333346666676666677766655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.07  E-value=0.026  Score=50.28  Aligned_cols=167  Identities=15%  Similarity=0.104  Sum_probs=86.9

Q ss_pred             CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCce-------------
Q psy12788         27 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNK-------------   92 (254)
Q Consensus        27 ~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~-------------   92 (254)
                      +.+.++| .+++ ...+.     .....+....|||+|+.+|-.....+.+++.... .....+..-             
T Consensus        23 ~~y~i~d~~~~~-~~~l~-----~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   23 GDYYIYDIETGE-ITPLT-----PPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEEETTTTE-EEESS------EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTTEEESB--HHH
T ss_pred             eeEEEEecCCCc-eEECc-----CCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEeccccceeEEcCccceec
Confidence            4688899 5544 43332     1235678899999999999887666767664322 111100000             


Q ss_pred             ecCCCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeeee---eEeeceeEEEEecC------CeEEEEeCCCCCceeeEE
Q psy12788         93 TIPNLYTISALSWKRDGSRIACGGLC-GSVELFESVLKR---TIWKGKFEMIYVSP------SQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        93 ~~~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~---~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~  162 (254)
                      +.+-...-.++-|||||++||..-.| ..|..+.+..-.   ..+.....+.|--.      -.+.++++.++.. ..+.
T Consensus        96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~-~~~~  174 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT-TELD  174 (353)
T ss_dssp             HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC-CEE-
T ss_pred             cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE-EEee
Confidence            00001223678999999999987754 445555442110   01111222233211      2466788887741 1222


Q ss_pred             EE---ecCCCceeEEEEecCcE-EEEE--ECCC---cEEEEeccCCce
Q psy12788        163 LK---SQYGYEITDVAIMGNDR-YLVA--RTPD---TLLLGDLHRNLL  201 (254)
Q Consensus       163 l~---s~~~~~i~~i~~~~~~~-~~v~--~~d~---~i~i~dl~~~~~  201 (254)
                      +.   .....-+..+.+.+++. +++.  ..++   .+.++|+.++++
T Consensus       175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence            22   11234588899998887 5553  3332   455779988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617|consensus

Probab=97.07  E-value=0.00098  Score=63.96  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=77.3

Q ss_pred             CCCEEEEecC--CeEEEEeC----CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          8 VPPYALSWPA--GYILAAGS----DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~----D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      ..+.-.+|.|  .+++.++.    .|.|-|+-.+|++.+...|      +-.+++++|||.--.||.|..-+ +.+|.-+
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~------P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY------PVHATSLCWHPEEFVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc------ceehhhhccChHHHHHhhccccceeEEEecC
Confidence            3345567887  36666654    4678888778887644432      23478899999888888887665 6677732


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ....   .  .....|..+|.-+.|||||..|.++..-|.|.+|.+-
T Consensus        90 ~~e~---h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTET---H--TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             Ccee---e--eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            2111   1  2223567789999999999999999999999999753

>KOG1912|consensus

Probab=97.00  E-value=0.018  Score=55.07  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecC-CCCcEeEEEEecC------CC------eEEEeecC
Q psy12788         52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRD------GS------RIACGGLC  118 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spd------G~------~la~g~~d  118 (254)
                      ..-.++.|+|.| ++|-|+..-+-+-|...-+    .  ...++ |...|+.+.|.|-      +.      +||++...
T Consensus        16 sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q----~--iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQ----L--IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             ccccccccCccc-eEEEecCceEEEEehhhhh----h--hhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence            346788999988 7888887777777743211    1  12222 4568999999873      22      78899999


Q ss_pred             CcEEEEeeeeeeeEe--------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeE-EEEe
Q psy12788        119 GSVELFESVLKRTIW--------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITD-VAIM  177 (254)
Q Consensus       119 g~v~iwd~~~~~~~~--------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~-i~~~  177 (254)
                      |.|.+||..++..+.                    ...+.+...+++.+.+|+..+|+    ...+-.++++|.+ +.+.
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----eeeccccCCcceeeeeeC
Confidence            999999976543211                    11245566788899999999984    3344456777775 8887


Q ss_pred             cCc--EEEEEECCCcEEEEec
Q psy12788        178 GND--RYLVARTPDTLLLGDL  196 (254)
Q Consensus       178 ~~~--~~~v~~~d~~i~i~dl  196 (254)
                      |-+  .+.+-+..+-+.+.+.
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             CCCcceEEEEccCceEEEEec
Confidence            744  3555566666666643

>KOG2314|consensus

Probab=97.00  E-value=0.013  Score=54.09  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             EEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec
Q psy12788         54 FTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~  117 (254)
                      -+-+.|||-|.||++--..+|.+|-    ...|..  ...+.|. .|.-+.|||.-+||++=+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWG----G~~f~r--~~RF~Hp-~Vq~idfSP~EkYLVT~s~  269 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWG----GESFDR--IQRFYHP-GVQFIDFSPNEKYLVTYSP  269 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeec----CccHHH--HHhccCC-CceeeecCCccceEEEecC
Confidence            4679999999999988777888997    444432  2233443 4778999999999998664

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.98  E-value=0.0076  Score=54.85  Aligned_cols=110  Identities=17%  Similarity=0.332  Sum_probs=73.6

Q ss_pred             cCCCCCEEEEecC--Ce--EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc----EEE
Q psy12788          5 QHPVPPYALSWPA--GY--ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN----IKL   76 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~--l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~----i~l   76 (254)
                      +...+|...+|.|  +.  +++|-.+-++.++|..|++...+.       +..=+.+-|||.+++++++++|+    +.+
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P-------e~~rNT~~fsp~~r~il~agF~nl~gni~i  344 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP-------EQKRNTIFFSPHERYILFAGFDNLQGNIEI  344 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccceEEecC-------CcccccccccCcccEEEEecCCccccceEE
Confidence            4467899999987  33  556667889999998888553221       22345678999999999999884    557


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee------cCCcEEEEeee
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG------LCGSVELFESV  127 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~------~dg~v~iwd~~  127 (254)
                      ||...  + ...  ...+ ......-+.|||||+++-+..      .|..|.|||+.
T Consensus       345 ~~~~~--r-f~~--~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         345 FDPAG--R-FKV--AGAF-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             eccCC--c-eEE--EEEe-ecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            77321  1 100  0001 112345578999999988775      47888899863

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.96  E-value=0.18  Score=42.23  Aligned_cols=96  Identities=10%  Similarity=0.047  Sum_probs=57.7

Q ss_pred             EEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEEC-CCCCEEEEEeCCcEEEEEecCCCcce
Q psy12788         11 YALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS-PSGQAVVVGSYDNIKLFAWSPSKSVW   86 (254)
Q Consensus        11 ~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~s-Pdg~~la~gs~d~i~l~d~~~~~~~~   86 (254)
                      .+++|++  + ++.+--..+.|..|+..+.....+.  .    +. ..++++. |+|.+++ +..+++.++|+..  +.+
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~----~~-~~G~~~~~~~g~l~v-~~~~~~~~~d~~~--g~~   72 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--L----PG-PNGMAFDRPDGRLYV-ADSGGIAVVDPDT--GKV   72 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--S----SS-EEEEEEECTTSEEEE-EETTCEEEEETTT--TEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--c----CC-CceEEEEccCCEEEE-EEcCceEEEecCC--CcE
Confidence            4678886  3 4555556788999996665554443  1    12 6788888 7766554 4556666777543  333


Q ss_pred             eecCceec---C-CCCcEeEEEEecCCCeEEEeecC
Q psy12788         87 EEQPNKTI---P-NLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        87 ~~~~~~~~---~-~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      +.  ....   . .....+.+++.|||++.++....
T Consensus        73 ~~--~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   73 TV--LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EE--EEEEETTCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             EE--EeeccCCCcccCCCceEEEcCCCCEEEEecCC
Confidence            32  1122   1 23478999999999977765543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.94  E-value=0.17  Score=41.68  Aligned_cols=160  Identities=18%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEE
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISAL  103 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l  103 (254)
                      +++|..|| .+|+.+....+..  +. ....+.++ +++..+.+++.+ .+..+|....+..|...    .+..  +...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~--~~-~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~----~~~~--~~~~   71 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP--GI-GGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFD----LPGP--ISGA   71 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS--SC-SSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEE----CSSC--GGSG
T ss_pred             CCEEEEEECCCCCEEEEEECCC--CC-CCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEee----cccc--ccce
Confidence            67899999 6999887765311  11 22222222 345566666655 48888876666677542    1111  1111


Q ss_pred             EEecCCCeEEEeecCCcEEEEeeeeeeeEeec--------------------eeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788        104 SWKRDGSRIACGGLCGSVELFESVLKRTIWKG--------------------KFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus       104 ~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      . ..++..+.+++.++.+..+|..+++..+..                    ...+....++.+...|+.+|.   .+--
T Consensus        72 ~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~---~~w~  147 (238)
T PF13360_consen   72 P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK---LLWK  147 (238)
T ss_dssp             E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE---EEEE
T ss_pred             e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc---EEEE
Confidence            1 335566667777888888887766655441                    111222336778888888883   2211


Q ss_pred             EecCCCc----e-------eEEEEecCcEEEEEECCCc-EEEEeccCCce
Q psy12788        164 KSQYGYE----I-------TDVAIMGNDRYLVARTPDT-LLLGDLHRNLL  201 (254)
Q Consensus       164 ~s~~~~~----i-------~~i~~~~~~~~~v~~~d~~-i~i~dl~~~~~  201 (254)
                      .......    +       ....+. ++..+++..++. +.+ |+.+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~~~-d~~tg~~  195 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDGRVVAV-DLATGEK  195 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTSSEEEE-ETTTTEE
T ss_pred             eecCCCCCCcceeeecccccceEEE-CCEEEEEcCCCeEEEE-ECCCCCE
Confidence            1111111    1       222233 356666666664 555 9999984

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.90  E-value=0.0024  Score=39.51  Aligned_cols=30  Identities=27%  Similarity=0.320  Sum_probs=27.4

Q ss_pred             CCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         97 LYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      ..+|..++|||...+||.|+.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356999999999999999999999999876

>KOG1275|consensus

Probab=96.87  E-value=0.0034  Score=60.74  Aligned_cols=114  Identities=19%  Similarity=0.184  Sum_probs=78.3

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeC---------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEe
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGS---------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGS   70 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~---------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs   70 (254)
                      ++..|++.+.+.+-..+.|++||.         |.-|+||| +.-+.+.-+.      -+....-+.|+|.- ..+|+.|
T Consensus       212 t~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~------~~~~P~flrf~Psl~t~~~V~S  285 (1118)
T KOG1275|consen  212 TFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ------FPYGPQFLRFHPSLTTRLAVTS  285 (1118)
T ss_pred             eeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc------cccCchhhhhcccccceEEEEe
Confidence            456799999998888899999975         66689999 6555553222      22234668899974 3456665


Q ss_pred             CCc-EEEEE---ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         71 YDN-IKLFA---WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        71 ~d~-i~l~d---~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      ..+ ..+.|   |......    .....+....+.+..+|+.|+-||.|..+|.|.+|.
T Consensus       286 ~sGq~q~vd~~~lsNP~~~----~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  286 QSGQFQFVDTATLSNPPAG----VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccceeeccccccCCCccc----eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            554 66777   3211100    011223345699999999999999999999999996

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.83  E-value=0.0021  Score=55.27  Aligned_cols=119  Identities=18%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCC--CCEEEEeeecCCCCCC-----CCEEEEEECCCCCEEEE-EeCC-
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYESD--GRVHRIFDYTAPHYKE-----REFTVACSSPSGQAVVV-GSYD-   72 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~--g~~~~~~~~~~~~~~~-----~~v~~~a~sPdg~~la~-gs~d-   72 (254)
                      -.|+..+.+++++.+  .+++ +.|=.|.+|+.+  ..+....+  .+ +|.     .-|++..|||..-.+.. .+.. 
T Consensus       169 NaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVD--iK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVD--IK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             ccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEe--cc-CccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence            468888999999874  4555 467789999822  22222222  22 442     35899999997544333 3333 


Q ss_pred             cEEEEEecCCC------cceeecCceecCC------CCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         73 NIKLFAWSPSK------SVWEEQPNKTIPN------LYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        73 ~i~l~d~~~~~------~~~~~~~~~~~~~------~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      .|++.|+....      ...+.. .-...+      ...|..+.|||+|++|++-+. -+|+|||...
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~-~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm  310 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELT-IDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM  310 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhc-cCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence            49999875211      111000 000001      136889999999999998764 5899999864

>KOG1920|consensus

Probab=96.79  E-value=0.16  Score=50.98  Aligned_cols=61  Identities=8%  Similarity=0.029  Sum_probs=41.1

Q ss_pred             CCCEEEEec--CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc
Q psy12788          8 VPPYALSWP--AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN   73 (254)
Q Consensus         8 ~~v~~l~w~--~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~   73 (254)
                      ..|.++.|-  ++.|+.+..+|.|.+-|.....+....     .-+..|.+++||||++.+|..+.+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-----~vd~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-----NVDNGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeee-----eccCceEEEeecCCCcEEEEEeCCc
Confidence            356777774  356777788888888883322221111     2346799999999999998877654

>KOG4190|consensus

Probab=96.64  E-value=0.0046  Score=56.93  Aligned_cols=125  Identities=17%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEE-eCC-cEEEEE
Q psy12788          4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVG-SYD-NIKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~g-s~d-~i~l~d   78 (254)
                      ..|+.+|..+.|-.+.-..+|+|+-|.+|| --|+++..+...   +..+.+..+..-|  +...+..| +.. +++++|
T Consensus       781 ~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             hhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcC---cccCCCceeEecccCcchheeeeccchhhheeee
Confidence            468888988888664334456699999999 567776533211   1122333333334  45555555 444 589998


Q ss_pred             ecCCCcceeec-CceecCC-CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe
Q psy12788         79 WSPSKSVWEEQ-PNKTIPN-LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus        79 ~~~~~~~~~~~-~~~~~~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      -.  ...|... +...-+. ...+.+++..|.|+++|+|-..|.+.+.|.++|+.+.
T Consensus       858 aR--sce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  858 AR--SCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             cc--cccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence            43  4445321 0111111 2468899999999999999999999999999887553

>KOG2695|consensus

Probab=96.58  E-value=0.0064  Score=52.96  Aligned_cols=120  Identities=13%  Similarity=0.120  Sum_probs=77.9

Q ss_pred             CCCCCEEEEecC--CeEEEEeCCCcEEEEe-CC-----CCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EE
Q psy12788          6 HPVPPYALSWPA--GYILAAGSDRIVTIYE-SD-----GRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IK   75 (254)
Q Consensus         6 h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~-----g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~   75 (254)
                      -++.|.++.|..  +.+..|...+.|...| +.     |.+.+.+      -|+..|+++..-. ++++|.+.++++ |+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl------yh~Ssvtslq~Lq~s~q~LmaS~M~gkik  324 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL------YHDSSVTSLQILQFSQQKLMASDMTGKIK  324 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE------EcCcchhhhhhhccccceEeeccCcCcee
Confidence            456788888854  5677888899999999 32     3455444      3677888887655 788888888885 99


Q ss_pred             EEEecCCCcceeecCceecC-C--CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIP-N--LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~-~--~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                      +||...-+..-.   ....+ |  ...-.-+...|....+++++.|-..|||.+..+.++..
T Consensus       325 LyD~R~~K~~~~---V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  325 LYDLRATKCKKS---VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             Eeeehhhhcccc---eeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            999754332100   11111 1  11112234456666778899999999999876665544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.57  E-value=0.23  Score=45.69  Aligned_cols=56  Identities=23%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             CCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         63 GQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        63 g~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      |.+|+..+.+.+.+|||...+..      ..+.. ..|..|.||+||+++|..+.+ .+.|++.
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i------~~i~v-~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLI------RRIDV-SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EE------EEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEECCCCEEEEEhhHccee------eEEec-CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            77787777666888888754422      12222 247889999999999988744 6667654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.53  E-value=0.12  Score=48.47  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             ccCCCCCEEEEecC----C--eEEEEeCCCcEEEEe--CC----CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC
Q psy12788          4 VQHPVPPYALSWPA----G--YILAAGSDRIVTIYE--SD----GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY   71 (254)
Q Consensus         4 ~~h~~~v~~l~w~~----~--~l~s~s~D~~i~vWd--~~----g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~   71 (254)
                      +|.-..|..|+|.|    +  .|++.--.+.|-||.  .+    ++.+-.......+..+---..+.|||....|++-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            44456789999987    1  467777788999997  22    222211111111011122357899999998887554


Q ss_pred             -CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-CcEEEEee
Q psy12788         72 -DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-GSVELFES  126 (254)
Q Consensus        72 -d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~  126 (254)
                       |--.++++.......    ...+...+.|.+-+|.+||++|+++-.. =.-+|||-
T Consensus       133 ~dvSV~~sV~~d~srV----kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRV----KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CceeEeeeeeeCCceE----EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence             432366654322211    2345667889999999999998776433 34567874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.52  E-value=0.08  Score=48.49  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             EEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--c---EEEEEecCCCcceeecCceecCCCCcEeEE
Q psy12788         29 VTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N---IKLFAWSPSKSVWEEQPNKTIPNLYTISAL  103 (254)
Q Consensus        29 i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~---i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l  103 (254)
                      +.+=|.+|.-.+.+.     .....+..-+|+|+++.++--++.  +   +.+++++.....-      ...-...-..-
T Consensus       175 l~~~D~dg~~~~~l~-----~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~------i~~~~g~~~~P  243 (425)
T COG0823         175 LALGDYDGYNQQKLT-----DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV------ILNFNGNNGAP  243 (425)
T ss_pred             EEEEccCCcceeEec-----ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce------eeccCCccCCc
Confidence            333355565444332     223467788999999987765432  2   4455554332211      11112233457


Q ss_pred             EEecCCCeEEEee-cCCcEEEE
Q psy12788        104 SWKRDGSRIACGG-LCGSVELF  124 (254)
Q Consensus       104 ~~spdG~~la~g~-~dg~v~iw  124 (254)
                      +|||||++||... .||...||
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEE
Confidence            8999999988665 46665554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.52  E-value=0.63  Score=42.47  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             CCCEEEEecC-CeEEEEeCCCcEEEEeCCCCE
Q psy12788          8 VPPYALSWPA-GYILAAGSDRIVTIYESDGRV   38 (254)
Q Consensus         8 ~~v~~l~w~~-~~l~s~s~D~~i~vWd~~g~~   38 (254)
                      ..+.++.|+. +.|+....||+++++|..|+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            5788889976 478888899999999976776

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.42  E-value=0.68  Score=41.75  Aligned_cols=176  Identities=13%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCC-cEEEEEecCCCcceeecCcee
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~   93 (254)
                      +.++.+..|+.+.-+| .+|+.+..+....  +. .... ..-+|  .+..+..++.+ .+..+|....+..|+......
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~-~~~~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~  236 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDV--PS-LTLR-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP  236 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCC--Cc-cccc-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence            4567777888999999 7899886553210  00 0000 00122  12234445555 466777766666775310000


Q ss_pred             cC-C-CCcEeEEEEec--CCCeEEEeecCCcEEEEeeeeeeeEeecee------------EEEEecCCeEEEEeCCCCCc
Q psy12788         94 IP-N-LYTISALSWKR--DGSRIACGGLCGSVELFESVLKRTIWKGKF------------EMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        94 ~~-~-~~~i~~l~~sp--dG~~la~g~~dg~v~iwd~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~~~~  157 (254)
                      .. + ......+.-+|  .+..+.+++.+|.+..+|..+++.++...+            ......++++...|..++. 
T Consensus       237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~-  315 (394)
T PRK11138        237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV-  315 (394)
T ss_pred             CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCc-
Confidence            00 0 00111111222  345666677889998899888776654322            1112235677777777763 


Q ss_pred             eeeEEEEec-CCC-ceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        158 GRGVILKSQ-YGY-EITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       158 ~~~~~l~s~-~~~-~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                         ...+.. ... ...+..+. ++.++++..++.+...|..+|++.
T Consensus       316 ---~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        316 ---ELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             ---EEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence               222111 111 22233333 577888888999999999999853

>KOG2041|consensus

Probab=96.37  E-value=0.0043  Score=58.72  Aligned_cols=116  Identities=9%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.||...|..+.|+.+  .|-|.-.+|-|.||- ..|.=...+ .. + .....|.+++|+-||+.++....|+ +.+=
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iN-n-RnKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-IN-N-RNKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hh-C-cCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence            57899999999999863  476777799999997 555311100 01 1 2235689999999999988766665 3232


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      .+ ...+.|.    ++++.. ...-+.||||.+.+..+-..|.+.++|.
T Consensus       143 sv-dGNRIwg----KeLkg~-~l~hv~ws~D~~~~Lf~~ange~hlydn  185 (1189)
T KOG2041|consen  143 SV-DGNRIWG----KELKGQ-LLAHVLWSEDLEQALFKKANGETHLYDN  185 (1189)
T ss_pred             ee-ccceecc----hhcchh-eccceeecccHHHHHhhhcCCcEEEecc
Confidence            22 1233342    122211 2346899999999999999999999995

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.37  E-value=0.21  Score=47.51  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             cEeEEEEecCCCeEEEeecCC----cEEEEeeeee------------eeEeeceeEEEEecCCeEEEEeCCC----CCce
Q psy12788         99 TISALSWKRDGSRIACGGLCG----SVELFESVLK------------RTIWKGKFEMIYVSPSQVLVKPLSG----ESKG  158 (254)
Q Consensus        99 ~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~  158 (254)
                      ...-++++|||+++.+.+.+.    ++..-+...+            +....+++.  ++..+++.+.|..+    +   
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~--~V~gn~V~VID~~t~~~~~---  310 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK--TIGGSKVPVVDGRKAANAG---  310 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE--EECCCEEEEEECCccccCC---
Confidence            345689999999999887322    2222222111            111123332  34567899999887    2   


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEEEEEC--CCcEEEEeccCCc
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYLVART--PDTLLLGDLHRNL  200 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~~i~i~dl~~~~  200 (254)
                      ..+.-.-..+.....++++|+++|+++..  +.++.|.|+++.+
T Consensus       311 ~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        311 SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            12222223466788999999998766443  7899999998754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.32  E-value=0.67  Score=42.74  Aligned_cols=46  Identities=7%  Similarity=0.030  Sum_probs=22.7

Q ss_pred             CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEe
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGD  195 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~d  195 (254)
                      +.+.++|+.++.     .++.-.-..|..|.+++++.+++-.++.++.|.+
T Consensus       126 ~~i~~yDw~~~~-----~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~  171 (443)
T PF04053_consen  126 DFICFYDWETGK-----LIRRIDVSAVKYVIWSDDGELVALVTKDSIYILK  171 (443)
T ss_dssp             TEEEEE-TTT-------EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred             CCEEEEEhhHcc-----eeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence            346666666552     2222222247788888777777766777777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.31  E-value=0.39  Score=43.99  Aligned_cols=105  Identities=16%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             CCCEEEEecCC--eEEEE---eCC-CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc---EEE
Q psy12788          8 VPPYALSWPAG--YILAA---GSD-RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN---IKL   76 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~---s~D-~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~---i~l   76 (254)
                      ..+..-+|+++  .|+-.   ... ..+.++| ..|+..+.+..      ...-..-+|+|||+.||... .|+   +.+
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc------CCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            34555677763  22211   112 3478888 55543333321      12334568999999988765 333   445


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELF  124 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iw  124 (254)
                      +|+..+. .     .+.....+.-+.=+|||||++|+-.+. .|.-+||
T Consensus       267 ~dl~~~~-~-----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         267 MDLDGKN-L-----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY  309 (425)
T ss_pred             EcCCCCc-c-----eecccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence            5543322 1     111111222235689999999987653 3444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.30  E-value=0.49  Score=41.31  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=61.3

Q ss_pred             CCCCEEEEEECCCCCEEEEEeCCcE-EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         50 KEREFTVACSSPSGQAVVVGSYDNI-KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        50 ~~~~v~~~a~sPdg~~la~gs~d~i-~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ....+..+.-++||+++|+++...+ +-|+  .....|+.   .......+|.+|.|+||+.+..++ ..|.++.=+.  
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~---~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~--  214 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQP---HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD--  214 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EE---EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE---
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEec--CCCccceE---EccCccceehhceecCCCCEEEEe-CCcEEEEccC--
Confidence            3457888999999999999987764 4555  55556764   233345789999999998887655 6777755431  


Q ss_pred             eeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        129 KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                                     +....-|.-..      ..+ ...+..+..+++.+++...+++..++++. ....|+
T Consensus       215 ---------------~~~~~~w~~~~------~~~-~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGk  263 (302)
T PF14870_consen  215 ---------------PDDGETWSEPI------IPI-KTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGK  263 (302)
T ss_dssp             ---------------TTEEEEE---B-------TT-SS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTS
T ss_pred             ---------------CCCcccccccc------CCc-ccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCc
Confidence                           00001111000      000 01134578889987777777777766654 445555

>KOG0882|consensus

Probab=96.30  E-value=0.024  Score=51.04  Aligned_cols=192  Identities=12%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             CCCEEEEec--CC----eEEEEe-CCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          8 VPPYALSWP--AG----YILAAG-SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         8 ~~v~~l~w~--~~----~l~s~s-~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      ..|-.+.|.  +.    .|+... .++.|.|+|.-+...+.. |..+ -|..+|.++.++|.++.+.+....+ |.-|..
T Consensus        96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-~fkk-lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen   96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-YFKK-LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc-eecc-cccCceEEEEeeccccceeeccccceeEeecC
Confidence            344556663  22    343333 467899999433211111 3333 5888999999999999988776555 666653


Q ss_pred             cC-----CC-cceee---cCce-ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--c-eeEEEEecCCe
Q psy12788         80 SP-----SK-SVWEE---QPNK-TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--G-KFEMIYVSPSQ  146 (254)
Q Consensus        80 ~~-----~~-~~~~~---~~~~-~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--~-~~~~~~~~~~~  146 (254)
                      ..     +. ..|+.   .... ..+.....+++.|+|+|..+++=+.|..|++++..+++.+..  . .-...+...+.
T Consensus       174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~  253 (558)
T KOG0882|consen  174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP  253 (558)
T ss_pred             CCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence            31     00 11111   0000 112234688999999999999999999999999988765431  0 00000111111


Q ss_pred             EEEEeCCCCCceeeEEEEe---cCCC-ceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        147 VLVKPLSGESKGRGVILKS---QYGY-EITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s---~~~~-~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ..+..+.-+   .++.+..   .++. .-..+.|...+.|+.=++-=.|++.++.++.+..+
T Consensus       254 y~l~~Velg---RRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri  312 (558)
T KOG0882|consen  254 YGLMHVELG---RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRI  312 (558)
T ss_pred             cccceeehh---hhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEE
Confidence            111111111   0111100   0112 23356666667788777777788888888876543

>KOG1645|consensus

Probab=96.22  E-value=0.047  Score=48.60  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEECCCCC-EEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEe
Q psy12788         49 YKEREFTVACSSPSGQ-AVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFE  125 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd  125 (254)
                      .+..-|..++|||..+ ++..++.+ .++|.|+.+....-      ...-...+.+++|.-|. .+|.+|...|.|.+||
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs------sy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS------SYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeee------heeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            4556799999999887 67788888 49999975433211      11112579999998875 4677888899999999


Q ss_pred             eee
Q psy12788        126 SVL  128 (254)
Q Consensus       126 ~~~  128 (254)
                      ++.
T Consensus       265 ~R~  267 (463)
T KOG1645|consen  265 MRQ  267 (463)
T ss_pred             ccC
Confidence            863

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.18  E-value=0.25  Score=47.27  Aligned_cols=121  Identities=20%  Similarity=0.289  Sum_probs=72.8

Q ss_pred             CEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEE--ecCCCeEEEeecCCcEEEEeeeee
Q psy12788         53 EFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      .++-+.-|.-++.-++.+.. .+.|||..  ....+.  ...+.....|.++.|  .|||+.+.+-+..+.|.++...  
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~--~~~lE~--~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~--  104 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTR--SGVLEY--EESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL--  104 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcC--CcEEEE--eeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc--
Confidence            34455555556654443333 47899954  333433  223455678999999  6799999999999999988531  


Q ss_pred             eeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEe
Q psy12788        130 RTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGD  195 (254)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~d  195 (254)
                            +|..+..+++-..+         ..+-+++...++|.+..+.+++.++||+ .+.+.|.|
T Consensus       105 ------R~dy~~~~p~w~~i---------~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~d  154 (631)
T PF12234_consen  105 ------RYDYTNKGPSWAPI---------RKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFD  154 (631)
T ss_pred             ------chhhhcCCccccee---------EEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEEC
Confidence                  12112222221111         2344455566889999999877777665 34555554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.07  E-value=0.024  Score=35.07  Aligned_cols=30  Identities=10%  Similarity=0.255  Sum_probs=26.0

Q ss_pred             CCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788         50 KEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus        50 ~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      ....|.+++|+|..++||.|+.++ +.++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            346799999999999999999996 878875

>KOG1275|consensus

Probab=96.06  E-value=0.31  Score=47.83  Aligned_cols=169  Identities=13%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             cCCeEEEEeCCCcEEEEeCC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788         16 PAGYILAAGSDRIVTIYESD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~   93 (254)
                      +++.++-|+....+...|.+ ++..+...+     ....|+-+..  +++++..|...+ |-+-|.+..+..     ...
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i-----ht~  213 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-----SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI-----HTF  213 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-----cCCceEEEEe--cCcEEEeecccceEEeecCCcCcee-----eee
Confidence            34567777777778888844 444433321     1223665654  578888888775 777775433221     122


Q ss_pred             cCCCCcEeEEEEecCCCeEEEeec---------CCcEEEEeeeeeeeEeece---------e-------EEEEecCCeEE
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGL---------CGSVELFESVLKRTIWKGK---------F-------EMIYVSPSQVL  148 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~---------dg~v~iwd~~~~~~~~~~~---------~-------~~~~~~~~~~~  148 (254)
                      ..|.+.|.  +|.-.|+.|++++.         |-.|++||+++-|.+..-.         |       .+..+..++..
T Consensus       214 ~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  214 DAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             ecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccccee
Confidence            34566665  45568999999884         6678999998765443211         1       12333445666


Q ss_pred             EEe---CCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEE-eccCCc
Q psy12788        149 VKP---LSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLG-DLHRNL  200 (254)
Q Consensus       149 v~~---~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~-dl~~~~  200 (254)
                      ..|   +..... ....+ -..+..+.++.+++++..+ ++..++.+-+| |...+.
T Consensus       292 ~vd~~~lsNP~~-~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~  346 (1118)
T KOG1275|consen  292 FVDTATLSNPPA-GVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQ  346 (1118)
T ss_pred             eccccccCCCcc-ceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCc
Confidence            666   333210 11111 1223458899999887655 46668899999 544443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.05  E-value=0.39  Score=45.95  Aligned_cols=67  Identities=22%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             EEEEEECCCCCEEEEEeCC-c-EEEEEecCCCcceee-cCceec--CCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         54 FTVACSSPSGQAVVVGSYD-N-IKLFAWSPSKSVWEE-QPNKTI--PNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d-~-i~l~d~~~~~~~~~~-~~~~~~--~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      .+.-.|+|||+.|++.+.. . .++.+-......+.. ....+.  .....|.++.|||||++||.-. +|.|
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v  470 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKV  470 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence            6778999999988887644 3 233332111122210 000000  1235799999999999999765 4544

>KOG2314|consensus

Probab=96.02  E-value=0.05  Score=50.27  Aligned_cols=100  Identities=12%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CEEEEecC--CeEEEEeC-----------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEE
Q psy12788         10 PYALSWPA--GYILAAGS-----------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIK   75 (254)
Q Consensus        10 v~~l~w~~--~~l~s~s~-----------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~   75 (254)
                      |.-+.|+|  .+|+|=|.           -..++||| .+|...+.|..... +. ....-..||.|++|+|--..|++.
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~-~~-~~WP~frWS~DdKy~Arm~~~sis  329 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS-PY-LKWPIFRWSHDDKYFARMTGNSIS  329 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC-Cc-cccceEEeccCCceeEEeccceEE
Confidence            56788888  47887543           25799999 99999988863211 11 223457899999999977678888


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~  116 (254)
                      ||+    .........+.+ ....|..-+|||.++.||-=+
T Consensus       330 IyE----tpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  330 IYE----TPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             EEe----cCceeeeccccc-CCccccCcccCCCcceEEEEc
Confidence            988    322211101111 124688889999999988543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.00  E-value=0.22  Score=47.42  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             CcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEE
Q psy12788         98 YTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI  176 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~  176 (254)
                      .....|.+||||+++.+++ .+.+|.+.|+...+-...++     ..+..+++-.+.             .|..-.-.+|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-----~~~~~~vvaeve-------------vGlGPLHTaF  382 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-----IKPRDAVVAEPE-------------LGLGPLHTAF  382 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-----CCccceEEEeec-------------cCCCcceEEE
Confidence            4567799999999987766 58999999986433221111     112222222222             2333445566


Q ss_pred             ecCc-EEEEEECCCcEEEEeccC
Q psy12788        177 MGND-RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       177 ~~~~-~~~v~~~d~~i~i~dl~~  198 (254)
                      .+++ .|.+-.-|+.+..||+..
T Consensus       383 Dg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        383 DGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCCEEEeEeecceeEEEehHH
Confidence            7665 355566788899999886

>KOG0309|consensus

Probab=95.94  E-value=0.021  Score=54.35  Aligned_cols=153  Identities=10%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             CCEEEEecC----C-eEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEEEE
Q psy12788          9 PPYALSWPA----G-YILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKLFA   78 (254)
Q Consensus         9 ~v~~l~w~~----~-~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l~d   78 (254)
                      .|..+.|++    + .+++-+.. ...+|+ .  +.+.+.   +.+- +|...|+.+-|+|.- ..+|+.+.|. +..||
T Consensus        69 ~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIe---f~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd  143 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIE---FVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWD  143 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcc-hhhhhhhhcCCccceE---EEEe-cCccceeccccCCCCCcceeeccccccceeee
Confidence            477788886    2 36665554 456798 2  333332   2222 899999999999975 5788999996 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ...-..-.-   .... -...-+.|+|+--...+.+.+....|++||.+-+.               ..+          
T Consensus       144 ~rSp~~p~y---s~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---------------~pl----------  194 (1081)
T KOG0309|consen  144 MRSPHRPFY---STSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---------------TPL----------  194 (1081)
T ss_pred             ccCCCccee---eeec-ccccCceeeecccCcchhhhccCCceEEEeccCCC---------------cce----------
Confidence            653221100   0000 11234668998766566666778889999874221               111          


Q ss_pred             eeEEEEecCCCceeEEEEec--CcEEEEEECCCcEEEEeccC
Q psy12788        159 RGVILKSQYGYEITDVAIMG--NDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~--~~~~~v~~~d~~i~i~dl~~  198 (254)
                        ..++. +-..|+.++|.-  ..+.+..+.|++++.||-+.
T Consensus       195 --~s~K~-~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  195 --CSLKG-HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             --EEecc-cceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence              11111 112345555531  23567788899999998663

>KOG2079|consensus

Probab=95.60  E-value=0.066  Score=53.07  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             CCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         62 SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        62 dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      .+-.+|.|+..+ +-+.|+...-+ |-   .......++|++++|+.||++++.|-.+|.|.+||...++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~---~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-PL---HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-hh---hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence            345577777664 66777643222 10   1112345799999999999999999999999999986544

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.42  E-value=0.64  Score=44.48  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             CCEEEEEECCCCCEEEEEe------CC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE-EE
Q psy12788         52 REFTVACSSPSGQAVVVGS------YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV-EL  123 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs------~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v-~i  123 (254)
                      ..+...++||||+.+|.--      .| .-+||-....... ..   . ... ...+.-+|+|||+.|++......+ ++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---l-t~g-~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---V-LEG-HSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---e-ecC-CCCCCceECCCCCceEEEecCcceEEE
Confidence            3578899999999887644      23 3456665432221 11   1 111 237788999999999887643232 22


Q ss_pred             EeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEe
Q psy12788        124 FESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGD  195 (254)
Q Consensus       124 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~d  195 (254)
                      .+.               ...+++.+.++..+.    ...  ..+..|.++.+|+++..++.-.++.+++.-
T Consensus       424 ~~~---------------~~~gql~~~~vd~ge----~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~  474 (591)
T PRK13616        424 IRD---------------PATGQLARTPVDASA----VAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAV  474 (591)
T ss_pred             ecc---------------CCCceEEEEeccCch----hhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence            110               112344444555442    111  335679999999998765544467777743

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.39  E-value=0.23  Score=43.50  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             CCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCC-EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788          6 HPVPPYALSWPAGYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         6 h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~-~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~   82 (254)
                      .+++|++++--.++|+.+. .++|.+|+ ...+ ..+.-.+.    .+..++++...  ++++++|... ++.++.|+..
T Consensus        87 ~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   87 VKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYD----SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEE  159 (321)
T ss_dssp             ESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETT
T ss_pred             ecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheec----ceEEEEEEecc--ccEEEEEEcccCEEEEEEEcc
Confidence            3577888876666655443 57899998 4444 44332221    22356666554  6689999865 6888877653


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      ......  ...-.....++++.|=+|++.++++..+|.+.++..
T Consensus       160 ~~~l~~--va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  160 NNKLIL--VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             TE-EEE--EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             CCEEEE--EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            332322  111112346899999988889999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.33  E-value=1.5  Score=37.14  Aligned_cols=120  Identities=12%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             ccCCCCCEEEEecCC--e-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAG--Y-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .+-...+..|+|+|+  . +++....+.|.-.+.+|+.++.+...   + ....-.+++--++.++++--.++ +.++.+
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~---g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD---G-FGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S---S--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC---C-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            344456899999973  4 44555566676667889999887643   3 23567888887776665443343 667776


Q ss_pred             cCCCcceeec--Ccee--cC--CCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         80 SPSKSVWEEQ--PNKT--IP--NLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        80 ~~~~~~~~~~--~~~~--~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ..........  ....  ..  +...+-.|+|.|.++.|.++-...-..+|...
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            3322211110  0011  11  23468899999999999989888888888764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2395|consensus

Probab=95.30  E-value=0.44  Score=44.15  Aligned_cols=99  Identities=21%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             EEEeCCCcEEEEeC--CCC-EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         21 LAAGSDRIVTIYES--DGR-VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        21 ~s~s~D~~i~vWd~--~g~-~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      +.|-.|..|.-||.  +|. .+..-....- .......|.+=.-+| ++|+||.++ |||||- ...+     ...-++.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy-~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~-----AKTAlPg  469 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQY-STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR-----AKTALPG  469 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeecccc-ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh-----hhhcccc
Confidence            34556778888992  454 2211110000 112456777777777 788999996 999993 1111     1222444


Q ss_pred             C-CcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         97 L-YTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        97 ~-~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      . .+|+-|.-+.||++|++. .+..+.+.|+..
T Consensus       470 LG~~I~hVdvtadGKwil~T-c~tyLlLi~t~~  501 (644)
T KOG2395|consen  470 LGDAIKHVDVTADGKWILAT-CKTYLLLIDTLI  501 (644)
T ss_pred             cCCceeeEEeeccCcEEEEe-cccEEEEEEEec
Confidence            3 489999999999998754 477777777653

>KOG1832|consensus

Probab=95.11  E-value=0.031  Score=54.42  Aligned_cols=73  Identities=23%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             CCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCc--EEEEe
Q psy12788         49 YKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS--VELFE  125 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~--v~iwd  125 (254)
                      .|....+|++|+-+-+.|++|+..+ ++++++..+..  +.   ...-|...|+-+.=|.||..+.+.+.-..  ..+|+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cc---cccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4667899999999999999999997 99999764332  11   11235668898999999998887765443  45677


Q ss_pred             e
Q psy12788        126 S  126 (254)
Q Consensus       126 ~  126 (254)
                      +
T Consensus      1174 ~ 1174 (1516)
T KOG1832|consen 1174 A 1174 (1516)
T ss_pred             c
Confidence            5

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.07  E-value=1.8  Score=36.63  Aligned_cols=99  Identities=19%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCEEEEecCC--eEEEEe--CC-CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          9 PPYALSWPAG--YILAAG--SD-RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s--~D-~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      .+.+.+++++  .++...  .+ ..++++...+.....+    . +  ..++.-+|+|+|...++...+. .+++.... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~-g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~-   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----T-G--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA-   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----c-C--CccccccccCCCCEEEEEcCCCceEEEEecC-
Confidence            5667778763  454444  22 3455554444333111    1 2  2577889999999887766553 55553211 


Q ss_pred             CcceeecCceecCCCC-cEeEEEEecCCCeEEEee
Q psy12788         83 KSVWEEQPNKTIPNLY-TISALSWKRDGSRIACGG  116 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~i~~l~~spdG~~la~g~  116 (254)
                      ....... ........ .|+++.+||||.++|.-.
T Consensus        97 ~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   97 SGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             CCcceeE-EecccccCCceEEEEECCCCcEEEEEE
Confidence            1111110 11111122 899999999999999876

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.84  E-value=0.71  Score=42.80  Aligned_cols=136  Identities=21%  Similarity=0.281  Sum_probs=77.3

Q ss_pred             EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC--------EEEEEeCC-cEEEEEecCCCcc--eeec
Q psy12788         22 AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ--------AVVVGSYD-NIKLFAWSPSKSV--WEEQ   89 (254)
Q Consensus        22 s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~--------~la~gs~d-~i~l~d~~~~~~~--~~~~   89 (254)
                      .|+.-..++--| ..|+.+..++     -|.. + -+.|.|+.+        .| +|-.+ ++  +.++++.+.  ....
T Consensus       485 dg~~~~kLykmDIErGkvveeW~-----~~dd-v-vVqy~p~~kf~qmt~eqtl-vGlS~~sv--FrIDPR~~gNKi~v~  554 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWD-----LKDD-V-VVQYNPYFKFQQMTDEQTL-VGLSDYSV--FRIDPRARGNKIKVV  554 (776)
T ss_pred             cCCCcccceeeecccceeeeEee-----cCCc-c-eeecCCchhHHhcCccceE-Eeecccce--EEecccccCCceeee
Confidence            444444444446 6677776665     2322 3 678888642        23 34333 43  333333322  1100


Q ss_pred             CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCC
Q psy12788         90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY  169 (254)
Q Consensus        90 ~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~  169 (254)
                      ..+.....+...+.+=. ..-|||+|+..|-|++||..-.+                       .     + ...+..|.
T Consensus       555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~r-----------------------A-----K-talP~lG~  604 (776)
T COG5167         555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKR-----------------------A-----K-TALPGLGD  604 (776)
T ss_pred             eehhccccccccccccc-cCceEEEecCCCceeeehhhcch-----------------------h-----h-hcCccccc
Confidence            01112222233333322 34589999999999999952111                       0     0 11134578


Q ss_pred             ceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        170 EITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       170 ~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      +|.-|.++.++.++.|.....+++-|+.
T Consensus       605 aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         605 AIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ceeeeEeecCCcEEEEeecceEEEEecc
Confidence            8999999999999999999999999976

>KOG2079|consensus

Probab=94.75  E-value=0.23  Score=49.48  Aligned_cols=101  Identities=13%  Similarity=0.143  Sum_probs=66.5

Q ss_pred             eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC-
Q psy12788         19 YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN-   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~-   96 (254)
                      .|+.|+.-+.+-..|.+|+... + +..+ .-.++|++++|+-||..++.|-.++ |.+||...... ...  ..+..+ 
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~-~-~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~--i~e~~ap  174 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGP-L-HQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKV--ITEHGAP  174 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccch-h-hcCC-ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eee--eeecCCc
Confidence            5777777788888786665332 2 2222 3457999999999999999998887 88999654332 111  111111 


Q ss_pred             CCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         97 LYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ...|.-+.|..++..+.++...|.  +|...
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            124555777778888888877776  67654

>KOG1645|consensus

Probab=94.55  E-value=0.12  Score=46.03  Aligned_cols=75  Identities=8%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             cccCCCCCEEEEecC--C-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA--G-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l   76 (254)
                      +.+|...|..++|+|  + +|..++.+.+|+|.| ++-.+..++.     .+ ..+.+++|.-|...++-|+ .++ +.+
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-----a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-----AY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-----cc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            456778899999998  2 588999999999999 5555554443     23 6899999998876655555 445 889


Q ss_pred             EEecCCC
Q psy12788         77 FAWSPSK   83 (254)
Q Consensus        77 ~d~~~~~   83 (254)
                      ||.+...
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9975433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.50  E-value=1.2  Score=43.48  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             CCEEEEEECCCCCEEEEEeCCcEEEEEecCC---Cccee----ecCceec---------CCCCcEeEEEEecC---CCeE
Q psy12788         52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPS---KSVWE----EQPNKTI---------PNLYTISALSWKRD---GSRI  112 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~---~~~~~----~~~~~~~---------~~~~~i~~l~~spd---G~~l  112 (254)
                      ..|..+.+||+|++||..+..++.|-.+-.+   ....+    ....+..         .....|..+.|+|.   +.+|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688999999999999988777555544211   00000    0001111         11237889999997   5899


Q ss_pred             EEeecCCcEEEEeee
Q psy12788        113 ACGGLCGSVELFESV  127 (254)
Q Consensus       113 a~g~~dg~v~iwd~~  127 (254)
                      ++=+.|+.+|+||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            999999999999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.47  E-value=4.5  Score=38.29  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=81.8

Q ss_pred             CCCEEEEecC-C-eEEEEe--CCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCC-----CEEEEEeCCcEEEEE
Q psy12788          8 VPPYALSWPA-G-YILAAG--SDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSG-----QAVVVGSYDNIKLFA   78 (254)
Q Consensus         8 ~~v~~l~w~~-~-~l~s~s--~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-----~~la~gs~d~i~l~d   78 (254)
                      .++..++|.. + .+++.=  ..+.+++=|  .+.+..|         ..|..++|.|-+     .+||+--...+-+|.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd--s~viGqF---------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD--SKVIGQF---------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC--ccEeecc---------ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            4678999954 3 455542  122222221  1334333         248999999953     467776555688998


Q ss_pred             ecCC---CcceeecCceecCCCCcE--eEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         79 WSPS---KSVWEEQPNKTIPNLYTI--SALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        79 ~~~~---~~~~~~~~~~~~~~~~~i--~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +...   ++.|...-..++...-+|  -.+-|+|....|++=.....-.++++.               .++...-.|+.
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~---------------~d~srVkaDi~  153 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH---------------CDSSRVKADIK  153 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee---------------eCCceEEEecc
Confidence            7532   222321111222221122  348899999998876654443344432               12222223442


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCC-cEEEEeccCC
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPD-TLLLGDLHRN  199 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~-~i~i~dl~~~  199 (254)
                      +             .+.|.+-.+..|+ +++||-.+. .-+|||-...
T Consensus       154 ~-------------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  154 T-------------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             C-------------CceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            2             3568888888777 455554333 6678885433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.39  E-value=2.3  Score=37.14  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcE------EEEEecCCCcceeecC-ce--ecCC
Q psy12788         27 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNI------KLFAWSPSKSVWEEQP-NK--TIPN   96 (254)
Q Consensus        27 ~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i------~l~d~~~~~~~~~~~~-~~--~~~~   96 (254)
                      .++..-| .+|+++.......+ -|...|.-++++++|..+...-+.+-      -|.-+..... ..... ..  ...-
T Consensus       138 psL~~ld~~sG~ll~q~~Lp~~-~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  138 PSLVYLDARSGALLEQVELPPD-LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRL  215 (305)
T ss_pred             CceEEEecCCCceeeeeecCcc-ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhh
Confidence            3455566 78887766433222 35667999999999976654432210      1222222111 11000 00  0011


Q ss_pred             CCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeE
Q psy12788         97 LYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTI  132 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~  132 (254)
                      .+.|-+|++++||.++|+.|- .|.+.+||..+++++
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            357999999999999877775 566888888766655

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.26  E-value=2.3  Score=36.09  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             CEEEEEECCCCCEEEEEe--CCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788         53 EFTVACSSPSGQAVVVGS--YDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF  124 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs--~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iw  124 (254)
                      .+.+.+++|||+.+|.-.  .++..||-........      .......++.-+|+|+|...++...+...+++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------PVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------eeccCCccccccccCCCCEEEEEcCCCceEEE
Confidence            688999999999887755  5555566654333211      11122368889999999988887777666665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4649|consensus

Probab=93.93  E-value=3.6  Score=35.12  Aligned_cols=105  Identities=16%  Similarity=0.258  Sum_probs=68.1

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      .+++.||..+.++--| .+|+.+..-.  +  +  ..|-+-+.- -|++++.|+..+ +.+.+.++..+.|........+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i--l--g--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI--L--G--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh--h--C--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            3677788888888788 7888763221  1  1  223221111 488899999885 7777877776777542111111


Q ss_pred             CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         96 NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                          + .-.--+||..|.+|+.|++....|..+..+.++
T Consensus        97 ----~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   97 ----V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             ----c-ceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence                1 123467999999999999999999877666553

>KOG3621|consensus

Probab=93.90  E-value=0.47  Score=45.21  Aligned_cols=121  Identities=13%  Similarity=0.151  Sum_probs=77.0

Q ss_pred             CCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         50 KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        50 ~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ++..+.--+++-.+++++.|+.-+ +.+|+  ...+...   ....+ ....+..+..|++..++|.|+..|.|.++-+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~--R~~~~~~---~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYN--RHTGEMR---KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEe--cCchhhh---cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            445566667788899999998776 66666  2121110   11111 23467788999999999999999999888653


Q ss_pred             eeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccC
Q psy12788        128 LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~  198 (254)
                      .+.            .+.++++.....           .++..|+++.+++++ ++.+|.+.+++.+--|.+
T Consensus       107 ~~~------------p~~~~~~t~~d~-----------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KEL------------PRDLDYVTPCDK-----------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccC------------CCcceeeccccc-----------cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            211            011111111110           135689999999877 577787788887777666

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.83  E-value=3.2  Score=34.23  Aligned_cols=162  Identities=14%  Similarity=0.164  Sum_probs=85.6

Q ss_pred             CCEEEEecC-CeEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe----CC---cEEEE
Q psy12788          9 PPYALSWPA-GYILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS----YD---NIKLF   77 (254)
Q Consensus         9 ~v~~l~w~~-~~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs----~d---~i~l~   77 (254)
                      .|..+.-++ +.|..+...++|.+|+ .  ..+.+.+|.      .-+.|..++++..|+||++--    .+   -+|+|
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            344444444 6555545567899999 3  234554442      336899999999999999842    12   35665


Q ss_pred             -EecCCCcceee---------------------cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec
Q psy12788         78 -AWSPSKSVWEE---------------------QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG  135 (254)
Q Consensus        78 -d~~~~~~~~~~---------------------~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~  135 (254)
                       +|......-..                     ....+++-..++.+++=.|-.--|++|+ ++.+.+|.+......   
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~---  168 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQ---  168 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEe---
Confidence             55433110000                     0012233334567777777544455555 566778876432211   


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEec
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDL  196 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl  196 (254)
                              ..++.+.|+..      ..+.-..+.....++|.  +.|++.-++..+++--+
T Consensus       169 --------~~~~~~lDFe~------~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  169 --------SEKFSFLDFER------SLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             --------cccccEEechh------hhhheecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence                    12223333321      11111223456677777  45776666666666543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.61  E-value=5.6  Score=36.29  Aligned_cols=48  Identities=17%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS   80 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~   80 (254)
                      .|+||+..|+++.++.+.    + +.+.++.|+.+-+++++-....++++|+.
T Consensus        62 ~I~iys~sG~ll~~i~w~----~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWD----S-GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCCCEeEEEEEC----C-CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            599999999999887642    2 67999999998888777654458999974

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008|consensus

Probab=93.61  E-value=0.018  Score=53.95  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             CCEEEEecC--C--eEEEEeCCCcEEEEe-CCCC-EEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeC----Cc-EEE
Q psy12788          9 PPYALSWPA--G--YILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSY----DN-IKL   76 (254)
Q Consensus         9 ~v~~l~w~~--~--~l~s~s~D~~i~vWd-~~g~-~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~----d~-i~l   76 (254)
                      -+.+++|.-  +  .|+.|..+|.|-+-. ++.. .-..  +. . ++..+.+++||+| |.+.||+|-.    |. +.|
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E--~t-p-~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE--VT-P-GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccce--ec-c-cccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            356777752  2  578888899988875 3211 1011  11 1 5677899999998 5566776621    22 669


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCC
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGES  156 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  156 (254)
                      ||.......-.+.....-.......+++|-.|-+++.+|.....+.++|++-.-                ..+..+.+  
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~----------------~~~~svnT--  195 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL----------------DSVSSVNT--  195 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh----------------hhhhhhhh--
Confidence            997643211000000001122356689999999999999999999999874100                00000111  


Q ss_pred             ceeeEEEEecCCCceeEEEEec-CcEEEEEECCCcEEEEe
Q psy12788        157 KGRGVILKSQYGYEITDVAIMG-NDRYLVARTPDTLLLGD  195 (254)
Q Consensus       157 ~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~~d~~i~i~d  195 (254)
                                  ..++.+.+.| ...|++...|+-+-+||
T Consensus       196 ------------k~vqG~tVdp~~~nY~cs~~dg~iAiwD  223 (783)
T KOG1008|consen  196 ------------KYVQGITVDPFSPNYFCSNSDGDIAIWD  223 (783)
T ss_pred             ------------hhcccceecCCCCCceeccccCceeecc
Confidence                        2355666776 56788888899999999

>PRK13684 Ycf48-like protein; Provisional

Probab=93.35  E-value=5.4  Score=35.29  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             CCEEEEecCC-eEEEEeCCCcEEE-EeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcce
Q psy12788          9 PPYALSWPAG-YILAAGSDRIVTI-YESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVW   86 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s~D~~i~v-Wd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~   86 (254)
                      .+.++...++ .++..+..+.+.. ++..|+....+.   . +....++++++.|+++.+++|....+ +..-......|
T Consensus       174 ~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~---~-~~~~~l~~i~~~~~g~~~~vg~~G~~-~~~s~d~G~sW  248 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQ---R-NSSRRLQSMGFQPDGNLWMLARGGQI-RFNDPDDLESW  248 (334)
T ss_pred             eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEee---C-CCcccceeeeEcCCCCEEEEecCCEE-EEccCCCCCcc
Confidence            4566776664 3555555565432 232333333222   1 33467899999999999888764434 33111234466


Q ss_pred             eecCceecCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         87 EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        87 ~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      +....-.......++++.+.|+++.+++| .+|.+
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v  282 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL  282 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence            53111001123468899999998877655 45655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.11  E-value=5.6  Score=34.78  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             CCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         50 KEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        50 ~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      ....|.++.|+|++.+..++ ..+ ++.=+.......|++...........+.+++|.|++...|+|+ .|.+
T Consensus       185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL  255 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred             ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence            45689999999999987765 444 5444411223445431011112334689999999988888766 4444

>KOG2114|consensus

Probab=92.89  E-value=10  Score=37.34  Aligned_cols=106  Identities=16%  Similarity=0.264  Sum_probs=66.6

Q ss_pred             CeEEEEeCCCc-----EEEEeC---CC----CEE---EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788         18 GYILAAGSDRI-----VTIYES---DG----RVH---RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus        18 ~~l~s~s~D~~-----i~vWd~---~g----~~~---~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      +.|++.++|.+     ++||+.   ++    +++   +.+.+... ..+.++++++.|-+=+.+|.|-.|+ |..+.=+.
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence            47889888865     999982   12    234   22221111 1357899999999988999988887 43332111


Q ss_pred             --CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         82 --SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                        .++.-   ........++||.+++..||+.+.-......|.+|.+.
T Consensus       157 ~RDrgsr---~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  157 LRDRGSR---QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS  201 (933)
T ss_pred             hhccccc---eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence              11110   01223445799999999999984445556778888875

>KOG3617|consensus

Probab=92.81  E-value=0.23  Score=48.40  Aligned_cols=70  Identities=10%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +..+.+|+|.|.  .|+.|-.-+.+-+|..+.+...+..   . .|+.+|..+.|||+|..+.++..-+ +.+|...
T Consensus        59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~---~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV---E-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceehhhhccChHHHHHhhccccceeEEEecCCceeeeec---c-CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            345678999995  4777777888999985555554443   2 6889999999999999999987666 7788765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.72  E-value=1  Score=41.11  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=52.3

Q ss_pred             CCCcEEEEe-CCCCEEEEeeecCCCCCCC-CEEEEEEC--CCCCEEEEEeCCcEEEEEec-CCCcceeecCceecCC---
Q psy12788         25 SDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSS--PSGQAVVVGSYDNIKLFAWS-PSKSVWEEQPNKTIPN---   96 (254)
Q Consensus        25 ~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-~v~~~a~s--Pdg~~la~gs~d~i~l~d~~-~~~~~~~~~~~~~~~~---   96 (254)
                      .-+++.+|| ...+.+++++..    .++ ..--+.|.  |+..+=.+|+.-.-.||-|- ...+.|.......++.   
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLG----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             ccCeEEEEECCCCcEeeEEecC----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence            357899999 778889888743    222 34456664  55665444544332344442 2355675432333322   


Q ss_pred             ---------------CCcEeEEEEecCCCeEEEee-cCCcEEEEeee
Q psy12788         97 ---------------LYTISALSWKRDGSRIACGG-LCGSVELFESV  127 (254)
Q Consensus        97 ---------------~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~  127 (254)
                                     ..-|++|..|.|.++|.+++ ..|.|+-||+.
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence                           12479999999999998887 68999999974

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.66  E-value=2.3  Score=37.62  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             CCEEEEecCC-eEEEEeCCCcEEEEeCCCCE---EEEeeecCCCCCCCCEEEEEECCC----CCEEEEEeC------C-c
Q psy12788          9 PPYALSWPAG-YILAAGSDRIVTIYESDGRV---HRIFDYTAPHYKEREFTVACSSPS----GQAVVVGSY------D-N   73 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~---~~~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs~------d-~   73 (254)
                      .|.+++|.|+ .++.+-..+.|++.+.+|..   +..+..... ..+.....++|+|+    +.+.+..+.      . .
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~-~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFA-DGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBT-STTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccc-cccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            5788999985 56666779999999966654   222211111 34467899999995    555444442      1 1


Q ss_pred             EEEEEe--cCCCcceee-cCc-eecC----CCCcEeEEEEecCCCeEEEeec
Q psy12788         74 IKLFAW--SPSKSVWEE-QPN-KTIP----NLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        74 i~l~d~--~~~~~~~~~-~~~-~~~~----~~~~i~~l~~spdG~~la~g~~  117 (254)
                      .+|..+  +........ ... ...+    ....-..|+|.|||.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            334333  222111110 000 0111    2235677999999977665554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4649|consensus

Probab=92.30  E-value=6  Score=33.83  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=18.5

Q ss_pred             CcEEEEEECCCcEEEEeccCC
Q psy12788        179 NDRYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       179 ~~~~~v~~~d~~i~i~dl~~~  199 (254)
                      ++++++++.|+-++-||+.+.
T Consensus       333 ~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  333 DGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             ccEEEEEEccCeEEEEecccc
Confidence            478999999999999999764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.24  E-value=1.2  Score=42.84  Aligned_cols=101  Identities=17%  Similarity=0.369  Sum_probs=58.9

Q ss_pred             EEEEeCC-CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC--CCCCEEEEEeCC-cEEEEE-----ecCCCcceeec
Q psy12788         20 ILAAGSD-RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS--PSGQAVVVGSYD-NIKLFA-----WSPSKSVWEEQ   89 (254)
Q Consensus        20 l~s~s~D-~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s--Pdg~~la~gs~d-~i~l~d-----~~~~~~~~~~~   89 (254)
                      ++....+ .++.||| ..+...    |.......+.|..+.|.  |||+.+.+-++. .+.++-     .......|...
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE----~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLE----YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEE----EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            3333333 3688999 455433    22111235689999885  789987766666 476664     22233444332


Q ss_pred             CceecC--CCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         90 PNKTIP--NLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        90 ~~~~~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      ....+.  ...+|.+..|-+||..++.+  ...+.|+|-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            111121  23589999999999877543  456777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.19  E-value=7  Score=35.29  Aligned_cols=60  Identities=20%  Similarity=0.336  Sum_probs=36.5

Q ss_pred             EEEEEECCCCCEEEEE----eCCc--EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC
Q psy12788         54 FTVACSSPSGQAVVVG----SYDN--IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG  119 (254)
Q Consensus        54 v~~~a~sPdg~~la~g----s~d~--i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg  119 (254)
                      +...++||||+++|.+    +.+.  ++++|+.++... ..    .+... ....+.|.+||+.|.....+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d----~i~~~-~~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PD----GIENP-KFSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EE----EEEEE-ESEEEEECTTSSEEEEEECST
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CC----ccccc-ccceEEEeCCCCEEEEEEeCc
Confidence            3467899999999864    3442  677886543211 11    11111 122399999999887776554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=92.19  E-value=7.9  Score=34.24  Aligned_cols=66  Identities=20%  Similarity=0.388  Sum_probs=44.0

Q ss_pred             CCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         51 EREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      ...+..+.+.|++.++++|....+ +...+.....|+..   .......++++.+.|+|+.+++|. .|.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i-~~s~~~gg~tW~~~---~~~~~~~l~~i~~~~~g~~~~vg~-~G~~  237 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNF-YSTWEPGQTAWTPH---QRNSSRRLQSMGFQPDGNLWMLAR-GGQI  237 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceE-EEEcCCCCCeEEEe---eCCCcccceeeeEcCCCCEEEEec-CCEE
Confidence            356889999999988887765443 22222334567541   223446799999999999887764 5655

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.75  E-value=9  Score=33.99  Aligned_cols=172  Identities=15%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             cCCeEEEEeCCCcEEEEe--CCCCEEEEeeecCCCCCCCC-EEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCc
Q psy12788         16 PAGYILAAGSDRIVTIYE--SDGRVHRIFDYTAPHYKERE-FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN   91 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd--~~g~~~~~~~~~~~~~~~~~-v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~   91 (254)
                      .++.+.+-+.||++.-..  .+|+..++-.-... ....+ +..-+++..+..+.--++++ ++--|+....-.+..  .
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~-~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~--~  222 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD-PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK--P  222 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS-TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE--E
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeeccccC-CCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC--c
Confidence            346788888999887765  67876533221111 12222 22344544444444456665 555555433322211  0


Q ss_pred             eecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEeeceeEEEEecC-CeEEEEeCCCCCceeeEEEEecCCC
Q psy12788         92 KTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIWKGKFEMIYVSP-SQVLVKPLSGESKGRGVILKSQYGY  169 (254)
Q Consensus        92 ~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~~  169 (254)
                      -++....+ ..-.|-|-|-.+++... .+.+.+  +..+..  .+    +...+ .++=++|+.++   ++ +-+-..++
T Consensus       223 ~~~~t~~e-~~~~WrPGG~Q~~A~~~~~~rlyv--LMh~g~--~g----sHKdpgteVWv~D~~t~---kr-v~Ri~l~~  289 (342)
T PF06433_consen  223 WSLLTDAE-KADGWRPGGWQLIAYHAASGRLYV--LMHQGG--EG----SHKDPGTEVWVYDLKTH---KR-VARIPLEH  289 (342)
T ss_dssp             EESS-HHH-HHTTEEE-SSS-EEEETTTTEEEE--EEEE----TT-----TTS-EEEEEEEETTTT---EE-EEEEEEEE
T ss_pred             ccccCccc-cccCcCCcceeeeeeccccCeEEE--EecCCC--CC----CccCCceEEEEEECCCC---eE-EEEEeCCC
Confidence            11100000 01257777766555443 333332  111110  00    00111 13456677776   33 33333356


Q ss_pred             ceeEEEEecCcE-EE-EEE-CCCcEEEEeccCCceee
Q psy12788        170 EITDVAIMGNDR-YL-VAR-TPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       170 ~i~~i~~~~~~~-~~-v~~-~d~~i~i~dl~~~~~~~  203 (254)
                      ++.+|+++.+++ ++ +.+ .++.+.++|..+|+...
T Consensus       290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            889999998663 44 344 46799999999998643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008|consensus

Probab=91.68  E-value=0.046  Score=51.38  Aligned_cols=113  Identities=14%  Similarity=0.226  Sum_probs=70.1

Q ss_pred             cCCCCCEEEEecC-C-eEEEEeCC-----CcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          5 QHPVPPYALSWPA-G-YILAAGSD-----RIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         5 ~h~~~v~~l~w~~-~-~l~s~s~D-----~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      +|..+..++||++ + ..+++|.|     ..+.||| .++  .+..+..+..  +......+++|-.+-++|.+|...+ 
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccccCcchhhcccccch
Confidence            4556789999987 2 33444454     4699999 444  2222211111  1223456888888888888887774 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFES  126 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~  126 (254)
                      ++++|+......     ..++ +...+..+..+| .+.|+++-. ||.|.+||.
T Consensus       178 ~~ifdlRqs~~~-----~~sv-nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  178 VHIFDLRQSLDS-----VSSV-NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             hhhhhhhhhhhh-----hhhh-hhhhcccceecCCCCCceeccc-cCceeeccc
Confidence            888886421111     1111 222455677888 788887665 999999994

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.64  E-value=4  Score=40.06  Aligned_cols=89  Identities=25%  Similarity=0.289  Sum_probs=54.1

Q ss_pred             cEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-eceeEEEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEE
Q psy12788         99 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-KGKFEMIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVA  175 (254)
Q Consensus        99 ~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~  175 (254)
                      .|..|..||+|+++|..|..|-+ |-.+  .+... .+.|+   -+..  .++.+.+...      ...+..+.+|..+.
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~L--P~r~g~~~~~~---~g~~~i~Crt~~v~~~------~~~~~~~~~i~qv~  153 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLEL--PRRWGKNGEFE---DGKKEINCRTVPVDER------FFTSNSSLEIKQVR  153 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEe--ccccCcccccc---CCCcceeEEEEEechh------hccCCCCceEEEEE
Confidence            68899999999999999976544 4443  11110 11110   0111  1222223211      22334456899999


Q ss_pred             EecCc----EEEEEECCCcEEEEeccCC
Q psy12788        176 IMGND----RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       176 ~~~~~----~~~v~~~d~~i~i~dl~~~  199 (254)
                      |+|.+    .+++-.+|++++++|+...
T Consensus       154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  154 WHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            99752    5778889999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.52  E-value=8.1  Score=33.53  Aligned_cols=120  Identities=15%  Similarity=0.173  Sum_probs=77.4

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEE-eCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIY-ESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vW-d~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .+-...+.+|.|+|+  .|.+......-.|| +.+|+.++++...   +. ...-++++.-+|+++++--.++ +.++-+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~---g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT---GF-SDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc---cc-CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            344455999999984  57776666666777 4899999988643   21 2344677877787766654554 556655


Q ss_pred             cCCCcceeecC----ceecCC-CCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         80 SPSKSVWEEQP----NKTIPN-LYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        80 ~~~~~~~~~~~----~~~~~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ...........    .....+ ......++|.|....|..+=...-++||...
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            54433221100    000111 2357789999999999999988888888653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=90.64  E-value=6  Score=35.98  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             cEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-e---ceeEEE---E-ecCCeEEEEeC---CCCC---ceeeEEEE
Q psy12788         99 TISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-K---GKFEMI---Y-VSPSQVLVKPL---SGES---KGRGVILK  164 (254)
Q Consensus        99 ~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-~---~~~~~~---~-~~~~~~~v~~~---~~~~---~~~~~~l~  164 (254)
                      .|+.++|+++..-||+|...|.|.||-....+... .   ...+..   + .....-.+.|+   ...+   -+....+-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999999999999999999998754322211 0   000000   0 00111222232   2222   12233332


Q ss_pred             ecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        165 SQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       165 s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ....++|+.++.|.=+=.++|+.++++.|.|++...+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPav  119 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAV  119 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeE
Confidence            2235689999998444556788899999999987664

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=90.64  E-value=5.9  Score=35.98  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcce--------e-----------ecCceec------------------
Q psy12788         53 EFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVW--------E-----------EQPNKTI------------------   94 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~--------~-----------~~~~~~~------------------   94 (254)
                      .|+.+.|+++..-||+|-..+ +.||.|...+..-        +           ......+                  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            488899999888888888775 7788885432111        0           0000000                  


Q ss_pred             -CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         95 -PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        95 -~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                       ...++|++++.| |=-++|+|..+|.+.|.|++-...++.
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence             123589999997 555999999999999999865555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.48  E-value=1.3  Score=38.28  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             EEECCCCCEEEE--EeCC---c-EEEEEecCCCcceeecCceecCCC-CcEeEEEEecCCCeEEEee
Q psy12788         57 ACSSPSGQAVVV--GSYD---N-IKLFAWSPSKSVWEEQPNKTIPNL-YTISALSWKRDGSRIACGG  116 (254)
Q Consensus        57 ~a~sPdg~~la~--gs~d---~-i~l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdG~~la~g~  116 (254)
                      -.|||||.+|-.  +.+|   + |-|||...   .++.  .-++... -....+.|.+||+.|+.+.
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~---~fqr--vgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDARE---GFQR--VGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEeccc---ccce--ecccccCCcCcceeEEecCCcEEEEeC
Confidence            369999998754  2344   2 56888642   1111  2222221 2456799999999998875

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.45  E-value=1.2  Score=25.73  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             CcEeEEEEecCCCeEEEeecC---CcEEEE
Q psy12788         98 YTISALSWKRDGSRIACGGLC---GSVELF  124 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~~d---g~v~iw  124 (254)
                      ..-...+|||||++|+-.+..   |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345778999999999877643   444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2444|consensus

Probab=89.83  E-value=0.94  Score=37.62  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             CeEEEEeCCCcEEEEeCC--CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceec
Q psy12788         18 GYILAAGSDRIVTIYESD--GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd~~--g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      ..++.|+.|+.|.+|+.+  |.....+. .   +.......+.--.++.+..+++.|+ +|.|+..+.+..         
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s---~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~---------  137 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVC-S---GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL---------  137 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhh-c---ccccceeccccccccceeEEeccCCceeeeccccCcee---------
Confidence            368899999999999844  33221111 0   1112223333334566788888885 888885443321         


Q ss_pred             CCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         95 PNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        95 ~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                         +.+....| -++..+++.+.++.+.+|+..
T Consensus       138 ---g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S  166 (238)
T KOG2444|consen  138 ---GYVGQHNF-ESGEELIVVGSDEFLKIADTS  166 (238)
T ss_pred             ---eeeccccC-CCcceeEEecCCceEEeeccc
Confidence               11111222 355666666667777777653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.81  E-value=17  Score=33.90  Aligned_cols=171  Identities=13%  Similarity=0.165  Sum_probs=92.3

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCC--C--------------CCCEEEEEECCCCCEEEEEeCC----------------
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHY--K--------------EREFTVACSSPSGQAVVVGSYD----------------   72 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~--~--------------~~~v~~~a~sPdg~~la~gs~d----------------   72 (254)
                      ++.+.-.| .+|+.+-.++......  .              ...-.+.++++.+.++.+++.+                
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            56788889 7898886654210000  0              0001234566666666666533                


Q ss_pred             ---cEEEEEecCCCcceeecCcee-c---CCCC--cEeEEEEecCCC---eEEEeecCCcEEEEeeeeeeeEeeceeE--
Q psy12788         73 ---NIKLFAWSPSKSVWEEQPNKT-I---PNLY--TISALSWKRDGS---RIACGGLCGSVELFESVLKRTIWKGKFE--  138 (254)
Q Consensus        73 ---~i~l~d~~~~~~~~~~~~~~~-~---~~~~--~i~~l~~spdG~---~la~g~~dg~v~iwd~~~~~~~~~~~~~--  138 (254)
                         .+...|..+.+..|....... .   ....  .+..+. .-||.   .+++++.+|.+...|..+++.++.....  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~  332 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ  332 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc
Confidence               355667777777786421100 0   0000  111111 12454   6778888999999999888877653321  


Q ss_pred             -------EEEe--------------------cCCeEEEEeCCCCCceeeEEEEecCC---------Cce--eEEEEecCc
Q psy12788        139 -------MIYV--------------------SPSQVLVKPLSGESKGRGVILKSQYG---------YEI--TDVAIMGND  180 (254)
Q Consensus       139 -------~~~~--------------------~~~~~~v~~~~~~~~~~~~~l~s~~~---------~~i--~~i~~~~~~  180 (254)
                             ..|.                    ..+.+...|+.+|+    .+.+...+         .+.  ..+... .+
T Consensus       333 ~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~----~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~  407 (488)
T cd00216         333 PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK----VVWEKREGTIRDSWNIGFPHWGGSLATA-GN  407 (488)
T ss_pred             ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc----EeeEeeCCccccccccCCcccCcceEec-CC
Confidence                   1121                    12356666777763    22222222         111  123333 35


Q ss_pred             EEEEEECCCcEEEEeccCCcee
Q psy12788        181 RYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       181 ~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .+++++.++.++-.|..+|++.
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             eEEEECCCCeEEEEECCCCcee
Confidence            6667778899999999999854

The alignment model contains an 8-bladed beta-propeller.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.49  E-value=2.4  Score=33.67  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=23.4

Q ss_pred             cEeEEEEecCC------CeEEEeecCCcEEEEeee
Q psy12788         99 TISALSWKRDG------SRIACGGLCGSVELFESV  127 (254)
Q Consensus        99 ~i~~l~~spdG------~~la~g~~dg~v~iwd~~  127 (254)
                      .|.+++|||-|      -+||+-+.+|.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999965      368888889999998753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247|consensus

Probab=89.48  E-value=0.046  Score=49.97  Aligned_cols=112  Identities=16%  Similarity=0.240  Sum_probs=76.6

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecC
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSP   81 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~   81 (254)
                      |-..+....|.+.  .++.++.+..+..||..|+.+..+.      .+...-.++|+-+|..+|+.-..  .+.+||.+.
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------~tg~aldm~wDkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhcceecccC------CchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence            3345667788762  4888888889999998787663332      33456678899899877665433  488999764


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ....     ..+....+.-.-+.|+|-+..++.|...|.++|+...+
T Consensus       107 eytq-----qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt  148 (615)
T KOG2247|consen  107 EYTQ-----QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT  148 (615)
T ss_pred             hhHH-----HHhccCcchHHHHhhccCCccccccccccceEEEeccc
Confidence            3321     11122222222378999999999999999999998654

>KOG1916|consensus

Probab=88.97  E-value=0.88  Score=44.88  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             ccCCCCCEEEEecC-C--eEEEEeCCCcEEEEe---CCCCEEEEeeecCCCC---CCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          4 VQHPVPPYALSWPA-G--YILAAGSDRIVTIYE---SDGRVHRIFDYTAPHY---KEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         4 ~~h~~~v~~l~w~~-~--~l~s~s~D~~i~vWd---~~g~~~~~~~~~~~~~---~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      .+.++.|..+.|-. +  .++  =.-+...||+   .+|+.+-.+..+...+   ....|.-+-|-|+.-+++.+-.+. 
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            35567777777743 1  111  1124578887   5776554443221101   123455555566777777776664 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeE-----------EEEecCCCeEEEeecCCcEEEEeee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISA-----------LSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~-----------l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +++..|+......      ...|...++.           -..||||+.+|.++.||.++.|...
T Consensus       207 i~lL~~~ra~~~l------~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  207 IRLLNINRALRSL------FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeEeeechHHHHH------HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            8888876432211      0112211111           2379999999999999999999764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.85  E-value=5.9  Score=32.87  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEe-e--ecCCC------CCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788          7 PVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIF-D--YTAPH------YKEREFTVACSSPSGQAVVVGSYDNIKL   76 (254)
Q Consensus         7 ~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~-~--~~~~~------~~~~~v~~~a~sPdg~~la~gs~d~i~l   76 (254)
                      ..+|..+.-..++|++...+|.+++|| .+++++-.- .  .-+..      .....|..+.++.+|.-+++-+......
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~   91 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS   91 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence            345666776777899999999999999 666543111 0  00110      1235688899999998888766544556


Q ss_pred             EEecCCCcceee
Q psy12788         77 FAWSPSKSVWEE   88 (254)
Q Consensus        77 ~d~~~~~~~~~~   88 (254)
                      |+  ..-..|..
T Consensus        92 y~--~~L~~W~~  101 (219)
T PF07569_consen   92 YS--PDLGCWIR  101 (219)
T ss_pred             ec--cccceeEE
Confidence            65  44556643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.62  E-value=0.85  Score=40.57  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             CCCCCEEEEEe----------CCcEEEEEecCCCcceeecCceecCC-CCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         60 SPSGQAVVVGS----------YDNIKLFAWSPSKSVWEEQPNKTIPN-LYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        60 sPdg~~la~gs----------~d~i~l~d~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ||||++++...          ...+.++|+..  +...     .+.. ...+....|||||+++|... ++.+.+.+...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~-----~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEIT-----PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEE-----ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceE-----ECcCCccccccceeecCCCeeEEEe-cCceEEEECCC
Confidence            68999887732          11244666543  2111     1111 35688899999999999876 67898887644


Q ss_pred             e
Q psy12788        129 K  129 (254)
Q Consensus       129 ~  129 (254)
                      +
T Consensus        73 ~   73 (353)
T PF00930_consen   73 G   73 (353)
T ss_dssp             S
T ss_pred             C
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2444|consensus

Probab=88.32  E-value=1.9  Score=35.89  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=36.9

Q ss_pred             CCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         63 GQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        63 g~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      +..++.|..++ +.+|.|+........  .... -..-..-+.--.++.+..+++.+|.|+-|.+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh--hhcc-cccceeccccccccceeEEeccCCceeeecccc
Confidence            45677788786 889998743322110  0000 011122233345677888999999999998653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.28  E-value=6.3  Score=38.44  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             CeEEEEeCCCcEEEEeC--------CC----CE-EEE--e--eecCCCCCCCCEEEEEEC--CCCCEEEEEeCC-cEEEE
Q psy12788         18 GYILAAGSDRIVTIYES--------DG----RV-HRI--F--DYTAPHYKEREFTVACSS--PSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd~--------~g----~~-~~~--~--~~~~~~~~~~~v~~~a~s--Pdg~~la~gs~d-~i~l~   77 (254)
                      +.|+.|.+||.|.+|..        ..    .. ...  .  .+..  .....+.+++++  ...++||+++.. .|-||
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            46899999999999931        01    00 000  0  0111  123468899998  888888888766 47777


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCC-----C-eEEEeecCCcEEEEeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-----S-RIACGGLCGSVELFESV  127 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-----~-~la~g~~dg~v~iwd~~  127 (254)
                      -+.........  ..+..+...|.+|+|-++.     . ++++++-.|.+.+|+..
T Consensus       193 af~l~~~r~~~--~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  193 AFALVDERFYH--VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecccccccc--ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            76542221111  1233455689999997653     2 88899999999999873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.30  E-value=1.7  Score=26.19  Aligned_cols=29  Identities=10%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             cEeEEEEecCC---CeEEEeecCCcEEEEeee
Q psy12788         99 TISALSWKRDG---SRIACGGLCGSVELFESV  127 (254)
Q Consensus        99 ~i~~l~~spdG---~~la~g~~dg~v~iwd~~  127 (254)
                      .|.+|.|||+.   .+||-+-.-|.|-|+|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            47889999864   488888888999999986

It contains a characteristic DLL sequence motif.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=86.38  E-value=22  Score=31.15  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=20.0

Q ss_pred             CCEEEEEECCCCCEEEEEeCC--cEEEEEec
Q psy12788         52 REFTVACSSPSGQAVVVGSYD--NIKLFAWS   80 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d--~i~l~d~~   80 (254)
                      ..-++++|||||+.|-.+...  .+.-|++.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            345789999999887776654  25555544

>KOG4460|consensus

Probab=86.23  E-value=14  Score=34.82  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             CCEEEEEECCCCCEEEEEeCCcEEEEEe----cC------CCcceeecC-----ceecC-CCCcEeEEEEecCC---CeE
Q psy12788         52 REFTVACSSPSGQAVVVGSYDNIKLFAW----SP------SKSVWEEQP-----NKTIP-NLYTISALSWKRDG---SRI  112 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~----~~------~~~~~~~~~-----~~~~~-~~~~i~~l~~spdG---~~l  112 (254)
                      .+|..+..+|.|..+|..+-+++.+..+    -.      .+.......     ..... ..-.+..++|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3577889999999999988888655433    10      000000000     00000 11256678999986   678


Q ss_pred             EEeecCCcEEEEeeee
Q psy12788        113 ACGGLCGSVELFESVL  128 (254)
Q Consensus       113 a~g~~dg~v~iwd~~~  128 (254)
                      ..=+.|..+|+||...
T Consensus       184 ~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEecCcEEEEEecCC
Confidence            8888899999999753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.02  E-value=31  Score=32.68  Aligned_cols=21  Identities=10%  Similarity=0.354  Sum_probs=17.8

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEE
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVH   39 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~   39 (254)
                      .++.+..++.+.+.| .+|+.+
T Consensus       317 ~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       317 LLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeCCCceEEEEECCCCcee
Confidence            577888899999999 789876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=85.82  E-value=26  Score=31.51  Aligned_cols=106  Identities=11%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             CEEEEecC--C-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC---Cc-EEEEEecC
Q psy12788         10 PYALSWPA--G-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY---DN-IKLFAWSP   81 (254)
Q Consensus        10 v~~l~w~~--~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~---d~-i~l~d~~~   81 (254)
                      +..++.++  . ..+....+..|.+-| ..-+.+.....    +.  ....++++|+++.+-++..   +. +.+.|  .
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid--~  147 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----GL--GPVGLAVDPDGKYVYVANAGNGNNTVSVID--A  147 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee----cc--CCceEEECCCCCEEEEEecccCCceEEEEe--C
Confidence            34445543  2 345555567888888 44445543321    22  4568999999987666544   33 44555  3


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV  127 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~  127 (254)
                      .......   .......+ ..++++|+|+.+.+.. .++.+.+.|..
T Consensus       148 ~t~~~~~---~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         148 ATNKVTA---TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             CCCeEEE---EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            2322211   11112234 7899999999776666 67888888753

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.43  E-value=12  Score=32.94  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             CEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc---eeecCceecCCCCcEeEEEEecC
Q psy12788         53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV---WEEQPNKTIPNLYTISALSWKRD  108 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~---~~~~~~~~~~~~~~i~~l~~spd  108 (254)
                      ..++++|.|||+++++--..+|++++  .....   .................++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~--~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD--KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE--TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe--CCCcCcceecccccccccccCCcccceeccc
Confidence            46789999999998765433476666  21211   11100111223457899999996

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.15  E-value=30  Score=31.54  Aligned_cols=62  Identities=24%  Similarity=0.464  Sum_probs=41.4

Q ss_pred             EEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         54 FTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      ...+..+|||.++++|.... ++-||  .....|+.   ...+....++++.|.+||..++++ ..|.+
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~---~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l  303 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQP---HNRASARRIQNMGWRADGGLWLLT-RGGGL  303 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEE---ecCCCccceeeeeEcCCCCEEEEe-CCceE
Confidence            45567889999999887665 33444  33333653   223345679999999999988766 45555

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=84.85  E-value=29  Score=31.21  Aligned_cols=112  Identities=16%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             CCEEEEecCC--eEEEEe---CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEec
Q psy12788          9 PPYALSWPAG--YILAAG---SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWS   80 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s---~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~   80 (254)
                      .+..++++++  .+..+.   .++++.+-| .++..+++.. .   + ..+ ..++++|+|+.+.+...+  .+.+.|.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-v---G-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-V---G-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-c---C-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            5677888763  344333   368888888 5566666532 1   1 123 789999999977666533  47777743


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC---cEEEEeee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG---SVELFESV  127 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg---~v~iwd~~  127 (254)
                      ... .+.........-......+.++|||+++.+.....   .+...|..
T Consensus       191 ~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         191 GNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             Ccc-eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence            221 11000000011122345689999999777666543   66666543

>KOG3630|consensus

Probab=84.55  E-value=3  Score=42.26  Aligned_cols=99  Identities=13%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             CCCEEEEecC---CeEEEEeCCCcEEEEeC--CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          8 VPPYALSWPA---GYILAAGSDRIVTIYES--DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         8 ~~v~~l~w~~---~~l~s~s~D~~i~vWd~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      .-+.++.|+|   ...+.+..|+.|++...  .-.....+      +.....++++|+|-|+.+++|-.++ +.=|....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc------CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            4567888987   35778888999999862  22222222      2345689999999999999997775 43333221


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEE
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC  114 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~  114 (254)
                      ....-.+  .-.....++|.+|.|=-.-.++++
T Consensus       230 eik~~ip--~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  230 EIKSEIP--EPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ceeeccc--CCCcCCCcceeEEEEecceeEEEE
Confidence            1100000  000111468999999655555543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.40  E-value=5.2  Score=33.16  Aligned_cols=84  Identities=11%  Similarity=0.039  Sum_probs=52.4

Q ss_pred             EEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE
Q psy12788        103 LSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY  182 (254)
Q Consensus       103 l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~  182 (254)
                      +.+..+|++|.+-+.+|.+.+||+..++......-           +.++-..   .. .........|..+.++.++.-
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-----------i~pll~~---~~-~~~~~~~~~i~~~~lt~~G~P   80 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-----------IAPLLNS---SP-VSDKSSSPNITSCSLTSNGVP   80 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-----------HHHHhcc---cc-cccCCCCCcEEEEEEcCCCCE
Confidence            34567899999999999999999987765543210           0000000   00 000012346777778777777


Q ss_pred             EEEECCCcEEEEeccCCce
Q psy12788        183 LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       183 ~v~~~d~~i~i~dl~~~~~  201 (254)
                      ++.-+++..+.||..-+.-
T Consensus        81 iV~lsng~~y~y~~~L~~W   99 (219)
T PF07569_consen   81 IVTLSNGDSYSYSPDLGCW   99 (219)
T ss_pred             EEEEeCCCEEEecccccee
Confidence            7777778888898776653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.28  E-value=16  Score=32.48  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=35.1

Q ss_pred             eEEEEecCcEEEEE---ECCCcEEEEeccCCcee-eEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeec
Q psy12788        172 TDVAIMGNDRYLVA---RTPDTLLLGDLHRNLLS-EVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGN  238 (254)
Q Consensus       172 ~~i~~~~~~~~~v~---~~d~~i~i~dl~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  238 (254)
                      ..++++.+++|+-.   +-..++-|-|+..+++. ++.-  |+=-..|...+....++.-+|.+.-+.+..
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceEEEEECC
Confidence            34566767765432   22457778888888753 3332  211123333344455666667777777764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=83.85  E-value=28  Score=30.24  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=73.3

Q ss_pred             CcEEEEe-CCC----CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEe
Q psy12788         27 RIVTIYE-SDG----RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTIS  101 (254)
Q Consensus        27 ~~i~vWd-~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~  101 (254)
                      |.|.+++ .+.    ..++.+ +..  ..+++|++++-- +| +|+++....+.+|++.... .+..  .........++
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i-~~~--~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~-~l~~--~~~~~~~~~i~  133 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI-HST--EVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSK-TLLK--KAFYDSPFYIT  133 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE-EEE--EESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTS-SEEE--EEEE-BSSSEE
T ss_pred             cEEEEEEEEcccccceEEEEE-EEE--eecCcceEhhhh-CC-EEEEeecCEEEEEEccCcc-cchh--hheecceEEEE
Confidence            7799998 442    233222 221  245788887755 34 4777776789999997654 1221  12222223455


Q ss_pred             EEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-
Q psy12788        102 ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-  180 (254)
Q Consensus       102 ~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-  180 (254)
                      ++..  -+++|++|+..+.+.++.....     ..         ++            ..+-+......++++.|.+++ 
T Consensus       134 sl~~--~~~~I~vgD~~~sv~~~~~~~~-----~~---------~l------------~~va~d~~~~~v~~~~~l~d~~  185 (321)
T PF03178_consen  134 SLSV--FKNYILVGDAMKSVSLLRYDEE-----NN---------KL------------ILVARDYQPRWVTAAEFLVDED  185 (321)
T ss_dssp             EEEE--ETTEEEEEESSSSEEEEEEETT-----TE----------E------------EEEEEESS-BEEEEEEEE-SSS
T ss_pred             EEec--cccEEEEEEcccCEEEEEEEcc-----CC---------EE------------EEEEecCCCccEEEEEEecCCc
Confidence            5554  4669999999999988743210     00         00            011111123357777776443 


Q ss_pred             EEEEEECCCcEEEEecc
Q psy12788        181 RYLVARTPDTLLLGDLH  197 (254)
Q Consensus       181 ~~~v~~~d~~i~i~dl~  197 (254)
                      .++++..++.+.+....
T Consensus       186 ~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  186 TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEETTSEEEEEEE-
T ss_pred             EEEEEcCCCeEEEEEEC
Confidence            66677777877776554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.74  E-value=34  Score=31.13  Aligned_cols=109  Identities=9%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             CCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEE--EeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788          9 PPYALSWPAG-YILAAGSDRIVTIYESDGRVHR--IFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV   85 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~--~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~   85 (254)
                      .+.++.|.++ .++.++.++.+..=+..|+.-.  .|...........++.+.|.++++.+++|....+  +-.....+.
T Consensus       282 ~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v--~~s~D~G~t  359 (398)
T PLN00033        282 RIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGIL--LRSTDGGKS  359 (398)
T ss_pred             ceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcE--EEeCCCCcc
Confidence            4567777653 4555667776543334443111  2211100011235899999999998888765433  222344566


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcE
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV  121 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v  121 (254)
                      |+.... .-.-....+++.|.++++.+++|. +|.|
T Consensus       360 W~~~~~-~~~~~~~ly~v~f~~~~~g~~~G~-~G~i  393 (398)
T PLN00033        360 WKRDKG-ADNIAANLYSVKFFDDKKGFVLGN-DGVL  393 (398)
T ss_pred             eeEccc-cCCCCcceeEEEEcCCCceEEEeC-CcEE
Confidence            754210 011134678999998888887664 6655

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=83.65  E-value=25  Score=29.53  Aligned_cols=112  Identities=15%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             CCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEE-----------eeecCCCCCCCCEEEEE---ECCCCCEEEEEeC
Q psy12788          9 PPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRI-----------FDYTAPHYKEREFTVAC---SSPSGQAVVVGSY   71 (254)
Q Consensus         9 ~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~-----------~~~~~~~~~~~~v~~~a---~sPdg~~la~gs~   71 (254)
                      +|..+.--+  +.|+.- .|+++.+++ ..-.....           .....  .....+...+   -...+.+|+++-.
T Consensus        37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~k  113 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVK  113 (275)
T ss_pred             eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccc--cccCCeeEEeeccccccceEEEEEEC
Confidence            366776666  334433 469999998 22111110           00011  1223344444   2234456777776


Q ss_pred             CcEEEEEecCCCcce-eecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         72 DNIKLFAWSPSKSVW-EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        72 d~i~l~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      .++.+|.|......+ ..  .+++.-...+.+++|.  ++.|+.|..++ ..+.|+.+
T Consensus       114 k~i~i~~~~~~~~~f~~~--~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~  166 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKL--LKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNT  166 (275)
T ss_pred             CEEEEEEEECCcccccce--eEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCC
Confidence            678999997643332 22  3445555789999998  66788887554 45667643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.80  E-value=8.1  Score=35.35  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             EEEECCCCCEEEEEeCCcEEE--EEecC--CC---cceeecCceecCCC--CcEeEEEEe-----------cCCCeEEEe
Q psy12788         56 VACSSPSGQAVVVGSYDNIKL--FAWSP--SK---SVWEEQPNKTIPNL--YTISALSWK-----------RDGSRIACG  115 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~d~i~l--~d~~~--~~---~~~~~~~~~~~~~~--~~i~~l~~s-----------pdG~~la~g  115 (254)
                      .++.+|+|+++|.|..+++-+  ..|..  ..   ..........+..+  ..|+++.|=           ||...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            568899999999998886322  23311  11   11111001112222  467777662           567899999


Q ss_pred             ecCCcEEEEee
Q psy12788        116 GLCGSVELFES  126 (254)
Q Consensus       116 ~~dg~v~iwd~  126 (254)
                      ..+|.|++|.-
T Consensus        86 ~ssG~vrfyte   96 (415)
T PF14655_consen   86 TSSGYVRFYTE   96 (415)
T ss_pred             ecccEEEEEec
Confidence            99999999974

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.43  E-value=22  Score=31.81  Aligned_cols=106  Identities=14%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             CCEEEEecCCeEEEEeCCCcEEEEeCCCC-----EEEEeeecCCCC---CCCCEEEEEECCCCCEEEE-EeCCc------
Q psy12788          9 PPYALSWPAGYILAAGSDRIVTIYESDGR-----VHRIFDYTAPHY---KEREFTVACSSPSGQAVVV-GSYDN------   73 (254)
Q Consensus         9 ~v~~l~w~~~~l~s~s~D~~i~vWd~~g~-----~~~~~~~~~~~~---~~~~v~~~a~sPdg~~la~-gs~d~------   73 (254)
                      .+..+++.++.|+.+..+.-.++.|.++.     ....+-......   +......++|.|||.+.++ |+...      
T Consensus        73 ~p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~  152 (367)
T TIGR02604        73 MVTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP  152 (367)
T ss_pred             CccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence            46778887654555555543344454331     111121111101   2345789999999987554 43211      


Q ss_pred             -----------EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         74 -----------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        74 -----------i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                                 -.+|.+++.....+.    .-........++|+|+|+++++-..+
T Consensus       153 ~~~~~~~~~~~g~i~r~~pdg~~~e~----~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       153 GTSDESRQGLGGGLFRYNPDGGKLRV----VAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCccCcccccCceEEEEecCCCeEEE----EecCcCCCccceECCCCCEEEEccCC
Confidence                       124444333322211    01122345679999999998765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=82.15  E-value=30  Score=29.31  Aligned_cols=74  Identities=9%  Similarity=0.072  Sum_probs=44.2

Q ss_pred             CCCCCEEEEEECCCCC-EEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         49 YKEREFTVACSSPSGQ-AVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~-~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      +-..++.+++|+|+.+ ++|+...... |+.++.......   ...+....-.-.|++--+|.++++--.++.+.+++.
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~~G~vlr---~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGE-IYELSLDGKVLR---RIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTE-EEEEETT--EEE---EEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCE-EEEEcCCCCEEE---EEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            4456799999999865 5555555553 555555433221   223344456778999888887776656888888876

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=81.21  E-value=37  Score=29.72  Aligned_cols=79  Identities=20%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             CceeEEEEecCcEEEEEECCCcEEEEeccCCc----eeeEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeecC--eee
Q psy12788        169 YEITDVAIMGNDRYLVARTPDTLLLGDLHRNL----LSEVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGNN--EIL  242 (254)
Q Consensus       169 ~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~  242 (254)
                      ..-..+++|+ +.-.++..++.++|-|+....    +..+.|. +.....+..++.......+.|.+-+=+-+..  -++
T Consensus       172 ~d~~~v~ISG-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g-~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~  249 (370)
T COG5276         172 GDTHDVAISG-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG-PGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVF  249 (370)
T ss_pred             CCceeEEEec-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecC-CceEEEEecCCeeEEEEcccceEEEecCCCCCceEe
Confidence            3446788886 455677788899999988652    4567777 5445555556666666666664443333332  256


Q ss_pred             eeeecCC
Q psy12788        243 TCVRIPT  249 (254)
Q Consensus       243 ~~~~~~~  249 (254)
                      |+-.|+.
T Consensus       250 gsyet~~  256 (370)
T COG5276         250 GSYETSN  256 (370)
T ss_pred             eccccCC
Confidence            6555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-05
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	3e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-04

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 19/137 (13%)

Query: 6   HPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 64
               P  L+    G I  A   + + IY           Y +        +    S   Q
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS--------SCVALSNDKQ 461

Query: 65  AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 123
            V VG  D+ + +  +  S +       KTI +   I+++++  +G+ +        V  
Sbjct: 462 FVAVGGQDSKVHV--YKLSGA--SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517

Query: 124 F-----ESVLKRTIWKG 135
           +       +     W  
Sbjct: 518 YSVANNFELAHTNSWTF 534

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 16  PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIK 75
             G +     D  + +  + G         A     +   +A S   G   V   Y +I 
Sbjct: 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS-ADGDIAVAACYKHIA 435

Query: 76  LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF 124
           +  +S  K          +P  Y  S ++   D   +A GG    V ++
Sbjct: 436 I--YSHGKLT-------EVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 11/134 (8%), Positives = 32/134 (23%), Gaps = 11/134 (8%)

Query: 1   GRVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSS 60
               +     + +   +  ++   ++  V  +                 K +   VA   
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203

Query: 61  PSGQAVVVGSYDN---IKLFAWSPSKSVWEE--------QPNKTIPNLYTISALSWKRDG 109
              +     S D    ++ F          +           K     Y ++++ +    
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263

Query: 110 SRIACGGLCGSVEL 123
             +   G  G +  
Sbjct: 264 KFLYTAGSDGIISC 277

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 60  SPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG 116
           SP+     VGS    I +  +      W  +  K  P   TI +L W  +   +A G 
Sbjct: 109 SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLLAAGC 165

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 17/137 (12%)

Query: 5   QHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS 62
           +    P   S    G+     +D  + I +   G + +       +      +++  +  
Sbjct: 404 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL---NSPGSAVSLS-QNYV 459

Query: 63  GQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSV 121
              +  G+     KL       S   + P +        S +S     + IA G + G +
Sbjct: 460 AVGLEEGNTIQVFKL--SDLEVSFDLKTPLR-----AKPSYISISPSETYIAAGDVMGKI 512

Query: 122 ELFESV---LKRTIWKG 135
            L++     +K + W  
Sbjct: 513 LLYDLQSREVKTSRWAF 529

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 24/211 (11%), Positives = 58/211 (27%), Gaps = 35/211 (16%)

Query: 14  SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72
             P   +L       +TI +    +V R  +       E  +    +  + +  +     
Sbjct: 91  RGPCNRLLLLYPGNQITILDSKTNKVLREIE--VDSANEIIYMYGHNEVNTEYFIWADNR 148

Query: 73  -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT 131
             I   ++             +  +    S+    +D   +A     G ++++       
Sbjct: 149 GTIGFQSYEDDSQYIV----HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS---- 200

Query: 132 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTL 191
                      SP Q   +    E              +I +V    N  ++V     T+
Sbjct: 201 -----------SPDQASSRFPVDEEA------------KIKEVKFADNGYWMVVECDQTV 237

Query: 192 LLGDLHRNLLSEVLWPDSGRNEKFYFDNVTV 222
           +  DL +++ +      +    K       +
Sbjct: 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
2pm7_B	297	Protein transport protein SEC13, protein transport	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.88
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.87
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.76
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.71
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.7
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.65
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.64
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.64
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.58
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.57
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.54
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.53
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.52
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.5
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.46
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.43
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.42
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.4
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.37
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.36
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.36
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.34
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.33
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.3
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.27
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.2
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.2
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.15
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.07
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.07
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.04
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.03
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.98
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.98
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.91
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.86
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.84
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.71
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.61
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.55
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.29
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.07
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.0
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.91
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.91
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.88
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.8
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.68
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.66
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.62
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.5
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.82
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.67
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.53
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.51
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.37
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.12
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.02
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.86
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.09
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.16
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.08
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.35
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.29
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.95
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.9
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.88
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	92.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.99
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.66
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.61
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	89.68
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	89.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	88.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	86.31
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	86.3
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.98
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	84.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	80.13

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=216.92  Aligned_cols=191  Identities=12%  Similarity=0.082  Sum_probs=146.2

Q ss_pred             cCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          5 QHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      .|...|.+++|+++ .|++|+.|++|+||| .+++++..+..... +|...|++++|+|+|++||+|+.|+ +++||+..
T Consensus        80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            35678999999984 799999999999999 77776655544444 7999999999999999999999996 99999764


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEee-------------------ceeEEEE
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWK-------------------GKFEMIY  141 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~-------------------~~~~~~~  141 (254)
                      ....     .....|...|++++|+|++. +|++|+.||.|++||+++++....                   +.+.++.
T Consensus       159 ~~~~-----~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          159 QVVL-----SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             TEEE-----EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CcEE-----EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            3321     12245778999999999985 689999999999999876543221                   1123344


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EE-EEEECCCcEEEEeccCCceeeE
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RY-LVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~-~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ..++.+++||+.++.  ....+ ..+...|++++|+|++ ++ ++++.|++|+|||+.++++...
T Consensus       234 ~~dg~v~~wd~~~~~--~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          234 DENGTVSLVDTKSTS--CVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             ETTSEEEEEESCC----CCEEE-ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             ccCCcEEEEECCCCc--EEEEE-cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            557789999999874  22333 3456789999999976 44 5688899999999999887543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.1e-27  Score=205.93  Aligned_cols=214  Identities=12%  Similarity=0.056  Sum_probs=162.0

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|...|.+++|+|+  +|++|+.|++|++|| .++++++.+.     .|..+|.+++|+|++++|++|+.|+ +++|
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-----ccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            46789999999999984  799999999999999 7788887765     6788999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE---e---------------eceeEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI---W---------------KGKFEM  139 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~---~---------------~~~~~~  139 (254)
                      |+.......     ....|...|++++|+|++++||+|+.||+|++||+..+...   .               ++.+.+
T Consensus        83 d~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           83 NYNTGEKVV-----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             ETTTCCEEE-----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             ECCCCcEEE-----EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            976544321     22357789999999999999999999999999997654211   1               112334


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec--Cc-EEEEEECCCcEEEEeccCCce-----------eeEe
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--ND-RYLVARTPDTLLLGDLHRNLL-----------SEVL  205 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~--~~-~~~v~~~d~~i~i~dl~~~~~-----------~~~~  205 (254)
                      +...++.+++||+..+.  ....+...+...+..+.+++  ++ .+++++.|++|+|||++++++           ..+.
T Consensus       158 sgs~D~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEETTSEEEEEETTCSS--CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCC--ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            45567789999998764  44555555566788999976  44 456788899999999998753           2445


Q ss_pred             CCCCCCceeEEeeCceEEEEEeC
Q psy12788        206 WPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      |+ |+++.......+....+|+.
T Consensus       236 ~~-p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          236 FH-PTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EC-SSSSEEEEEETTSCEEEEET
T ss_pred             EC-CCCCEEEEEcCCCeEEEEEC
Confidence            55 55544444444555566665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=3e-27  Score=203.30  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=150.7

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +..|..+|.+++|++  +.|++|+.|++|++|| .+++++..+.     +|...|++++|+|++++|++|+.|+ +++||
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-----CCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence            557899999999987  5899999999999999 7889887775     7889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-------------------eceeE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-------------------KGKFE  138 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-------------------~~~~~  138 (254)
                      +.......    .....|...|++++|+| ++.+||+|+.||.|++||+.......                   ++.+.
T Consensus       126 ~~~~~~~~----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          126 WENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             GGGTTEEE----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             CCCCcchh----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            76432211    12335677899999999 68999999999999999975322110                   22356


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ++...++.+++||+.++   ..+.....+...|..++|+|++. +++++.|++|+|||+.++++.
T Consensus       202 ~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          202 ITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            67777899999999988   33333344567899999999875 566788999999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=206.49  Aligned_cols=189  Identities=12%  Similarity=0.171  Sum_probs=150.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+++  .+++++.|++|++|| .+++++..+.     .+...+.+++|+|+|++||+|+.|+ +++|+
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID-----AGPVDAWTLAFSPDSQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-----CCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            5789999999999974  799999999999999 7888887775     5667899999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~  142 (254)
                      +........     ...+...|.+++|+|||++||+|+.||.|++||+.+++...                ++.+.++..
T Consensus       151 ~~~~~~~~~-----~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          151 VESGKKEYS-----LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             TTTCSEEEE-----EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred             cCCCceeEE-----ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence            765443221     22345679999999999999999999999999987655432                123344555


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeE
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      .++.+++||+.++.   .......+...|.+++|+|++. +++++.|++++|||+.++++...
T Consensus       226 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  285 (321)
T 3ow8_A          226 DDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT  285 (321)
T ss_dssp             TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCeEEEEECCCcc---eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence            67789999998873   3333344556899999999875 55678899999999998876433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=1.2e-27  Score=214.35  Aligned_cols=213  Identities=14%  Similarity=0.143  Sum_probs=161.4

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|..+|.+++|+|+  .|++|+.|++|++|| .+|++.+++.     +|...|++++|+|+|++||+|+.|+ +++|
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-----~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----ccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            35689999999999984  799999999999999 7888876664     7999999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~  141 (254)
                      |+......     .....|...|++++|+|+|++|++|+.|+.|++||+.+++...                ++.+.++.
T Consensus       178 d~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          178 DFQGFECI-----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             ETTSSCEE-----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eCCCCcee-----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            97543221     1123466789999999999999999999999999987654322                12344556


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC--------------------c-EEEEEECCCcEEEEeccCCc
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN--------------------D-RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~--------------------~-~~~v~~~d~~i~i~dl~~~~  200 (254)
                      ..++.+++||+.++.   .......+...|.+++|+|+                    + .+++++.|++++|||+.+++
T Consensus       253 s~D~~v~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          253 SNDQTVRVWVVATKE---CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             ETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCc---eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            678899999998874   23233345678999999974                    2 35678889999999999875


Q ss_pred             e-----------eeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788        201 L-----------SEVLWPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       201 ~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      +           ..+.|+ ++|+..+....+....+|+.
T Consensus       330 ~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          330 CLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             EEEEEECCSSCEEEEEEC-SSSSCEEEEETTTEEEEECC
T ss_pred             eEEEEECCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEC
Confidence            3           345555 44444444444444455544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=1e-26  Score=201.45  Aligned_cols=187  Identities=12%  Similarity=0.072  Sum_probs=145.5

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEeCC------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYESD------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd~~------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      .|.+|..+|.+++|+|   ++|+|||.|++|++||..      +.+++.+.     +|...|++++|+|+|++|++|+.|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-----CCcccEEEEEECCCCCEEEEEeCC
Confidence            5789999999999986   479999999999999832      23344444     899999999999999999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------  133 (254)
                      + +++||+......     .....|...|++++|+|+|++|++|+.||+|++||+..+....                  
T Consensus        87 ~~v~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           87 KTLRLWDVATGETY-----QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred             CEEEEEECCCCCee-----EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence            6 999997543321     1234577899999999999999999999999999974321110                  


Q ss_pred             ---eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788        134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                         ++.+.++...++.+++||+.+.   ........+...|.+++|+|++++ ++++.|++|+|||+.+++.
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence               0113455567889999999887   333333445678999999998865 5678899999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=9.2e-27  Score=203.79  Aligned_cols=187  Identities=14%  Similarity=0.118  Sum_probs=140.2

Q ss_pred             ccccCCC-CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPV-PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~-~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      +|.+|+. .|..++|+|+  +|++|+.|++|+||| ..+...... .... +|...|++++|+|+|++||+|+.|+ +++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-~~~~-~h~~~v~~~~~sp~g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-VLSE-GHQRTVRKVAWSPCGNYLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-EECS-SCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-eecc-ccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence            4678987 9999999984  799999999999999 455432221 1123 7899999999999999999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee---Ee----------------ecee
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT---IW----------------KGKF  137 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~---~~----------------~~~~  137 (254)
                      |+.+.......   .....|...|++++|+|||++||+|+.|+.|++||+..+..   ..                ++.+
T Consensus        88 w~~~~~~~~~~---~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           88 WKKNQDDFECV---TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEECCC-EEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEccCCCeEEE---EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            99764332111   12235678999999999999999999999999999854311   10                1233


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEEEEec
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLLLGDL  196 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl  196 (254)
                      .++...++.+++|+...+   ....+.  ..+...|.+++|+|++++ ++++.|++++|||+
T Consensus       165 l~s~s~d~~i~~w~~~~~---~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          165 LASASYDDTVKLYREEED---DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCcEEEEEecCC---CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            455566788999998876   322222  334568999999998865 56788999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=5.5e-27  Score=210.09  Aligned_cols=211  Identities=13%  Similarity=0.139  Sum_probs=161.5

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|...|.+++|+|  ++|++||.|++|++|| .++++++++.     +|...|++++|+|+|++|++|+.|+ +++|
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-----GHDHNVSSVSIMPNGDHIVSASRDKTIKMW  219 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-----CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            3568999999999987  4799999999999999 6778885553     8899999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------------------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------------------  134 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------------------  134 (254)
                      |+......     .....|...|.++.|+|||++|++|+.||.|++||+.+++....                       
T Consensus       220 d~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  294 (410)
T 1vyh_C          220 EVQTGYCV-----KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS  294 (410)
T ss_dssp             ETTTCCEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred             ECCCCcEE-----EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchh
Confidence            97653321     12235667899999999999999999999999999865432210                       


Q ss_pred             -------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc
Q psy12788        135 -------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       135 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~  200 (254)
                                   +.+.++...++.+++||+.++   ..+.....+...|.+++|++++++ ++++.|++|+|||+.+++
T Consensus       295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             GCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             hhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence                         335666777889999999988   333333445678999999998764 567889999999998876


Q ss_pred             eeeE-eCCCCCCceeEEeeCceEEEEEeC-CeeEEEE
Q psy12788        201 LSEV-LWPDSGRNEKFYFDNVTVCLVFNA-GELSIIE  235 (254)
Q Consensus       201 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~  235 (254)
                      +... .-+          .+.+.++.|++ +.+.+..
T Consensus       372 ~~~~~~~h----------~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          372 CMKTLNAH----------EHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             CCEEEECC----------SSCEEEEEECSSSSCEEEE
T ss_pred             eEEEEcCC----------CCcEEEEEEcCCCCEEEEE
Confidence            4322 211          22466777777 4444333

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=4.9e-26  Score=198.60  Aligned_cols=189  Identities=13%  Similarity=0.143  Sum_probs=148.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|..+|.+++|+|+  +|++||.|++|++|| .+++++..+.     .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-----LRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-----cCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            46789999999999984  799999999999999 7888887765     6778999999999999999999996 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~  141 (254)
                      ++.......... .....|...|+++.|+|++. +++++.||.|++||+.+++...                ++.+.++.
T Consensus       125 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVS-RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEE-EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeE-EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            976543222110 12235677899999999986 8899999999999987654332                12234455


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      ..++.+++||+.++.   .......+...|++++|+|++. +++++.|++++|||+.+++
T Consensus       203 ~~d~~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          203 ACDASAKLWDVREGM---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             ETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eCCCcEEEEECCCCe---eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            567889999999873   3333344567899999999875 5667889999999998765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=3e-26  Score=201.47  Aligned_cols=191  Identities=14%  Similarity=0.141  Sum_probs=148.7

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|..+|.+++|+|+  +|+|||.|++|++|| .+++....+.     .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-----MPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-----cCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            46799999999999984  799999999999999 7788776664     5667899999999999999999996 8999


Q ss_pred             EecCCCccee-ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeE
Q psy12788         78 AWSPSKSVWE-EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFE  138 (254)
Q Consensus        78 d~~~~~~~~~-~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~  138 (254)
                      ++........ ........|...|.+++|+|++++|++|+.||+|++||+..++...                  .+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            9754321110 0001123467789999999999999999999999999986554321                  11234


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      ++...++.+++||+.++.   .+.....+...|++++|+|++. +++++.|++++|||+.+++
T Consensus       214 ~sgs~Dg~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQ---CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             EEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEeCCCeEEEEECCCCc---EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            455567899999999883   3333345567899999999775 5668889999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=8.9e-27  Score=202.37  Aligned_cols=215  Identities=13%  Similarity=0.157  Sum_probs=157.7

Q ss_pred             ccccCCCCCEEEEecC------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          2 RVVQHPVPPYALSWPA------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      ++.+|...|.+|+|++      +.|+|||.|++|+||| .+++....  ..+. +|...|.+++|+|++.++|+|+.|+ 
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~--~~l~-gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ--WSLE-GHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE--EEEC-CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee--eeec-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3568999999999976      3799999999999999 45543222  2234 8999999999999999999999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------ecee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKF  137 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~  137 (254)
                      +++||+.......     ....+...+.+++|+|||++||+|+.||.|++||+..++...                ++.+
T Consensus       104 i~lWd~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          104 IRLWDLENGKQIK-----SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEEETTTTEEEE-----EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             EEEEECCCCCEEE-----EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            9999975433211     112345678899999999999999999999999986544322                1234


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc-----------eeeEe
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL-----------LSEVL  205 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~-----------~~~~~  205 (254)
                      .++...++.+++||+.++   ..+.....+...|.+++|+|+++++ +++.|++|+|||+.+++           +..+.
T Consensus       179 lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEEEETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            455566788999999988   3333334456689999999988655 56778999999998765           34566


Q ss_pred             CCCCCCceeEEeeCceEEEEEeC
Q psy12788        206 WPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       206 ~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      |+ |+++.......+....+|+.
T Consensus       256 ~s-p~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          256 FC-PDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEET
T ss_pred             EC-CCCCEEEEEeCCCcEEEEeC
Confidence            66 55554444444455555554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=2.7e-26  Score=200.38  Aligned_cols=227  Identities=12%  Similarity=0.136  Sum_probs=160.8

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+|+  +|++|+.|++|++|| .+++++..+.     +|...|++++|+|+|++|++|+.|+ +++||
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-----GHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-----CCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-----CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            5789999999999974  799999999999999 7888887775     7889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCC----------CeEEEeecCCcEEEEeeeeeeeE---------------e
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG----------SRIACGGLCGSVELFESVLKRTI---------------W  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG----------~~la~g~~dg~v~iwd~~~~~~~---------------~  133 (254)
                      +.. ......  .....|...|.+++|+|++          .+|++++.||.|++||.......               .
T Consensus       147 ~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          147 ILG-ECKFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             SSS-CEEEEC--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT
T ss_pred             ccC-Cceeee--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC
Confidence            752 111110  1112456789999999998          79999999999999995321110               0


Q ss_pred             eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE-eCCCCCCc
Q psy12788        134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV-LWPDSGRN  212 (254)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~-~~~~~~g~  212 (254)
                      ++.+.++...++.+++||+..... ....+  ..+..|.+++|+|+++++++++|++++|||+.+++...+ ........
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~  300 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTY-PQREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPIT  300 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSS-CSEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcc-cceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcch
Confidence            234556666788999999954321 11222  245679999999999999999999999999988754221 11100000


Q ss_pred             ---eeEEeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788        213 ---EKFYFDNVTVCLVFNA-GELSIIEYGNNE  240 (254)
Q Consensus       213 ---~~~~~~~~~~~~~~~~-g~~~~~~~~~~~  240 (254)
                         ........+.++.|++ |...+....+..
T Consensus       301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             GBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             hhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence               0000123466778877 665555554443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.8e-25  Score=191.78  Aligned_cols=188  Identities=14%  Similarity=0.191  Sum_probs=149.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|..+|.+++|+|+  +|++|+.|++|++|+ .+++....+.     +|...|.+++|+|+|++|++|+.|+ +++||
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-----cCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            5689999999999984  799999999999999 7788876664     7888999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMIYV  142 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~  142 (254)
                      +......     .....|...|.+++|+|++++|++|+.||.|++||+..++...                ++.+.++..
T Consensus        94 ~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           94 VSSGKCL-----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             TTTCCEE-----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            7654322     1223466789999999999999999999999999987654332                122344555


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .++.+++||+.++.  ....+.......+..++|+|++++ ++++.|+.+++||+.+++..
T Consensus       169 ~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          169 YDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             TTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            67789999998874  222233344567999999998865 55677999999999988754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1.6e-25  Score=195.47  Aligned_cols=182  Identities=11%  Similarity=0.115  Sum_probs=138.6

Q ss_pred             ccccCCCCCEEEEe-----cC---CeEEEEeCCCcEEEEe-CCC-------CEEEEeeecCCCCCCCCEEEEEECCCCCE
Q psy12788          2 RVVQHPVPPYALSW-----PA---GYILAAGSDRIVTIYE-SDG-------RVHRIFDYTAPHYKEREFTVACSSPSGQA   65 (254)
Q Consensus         2 ~l~~h~~~v~~l~w-----~~---~~l~s~s~D~~i~vWd-~~g-------~~~~~~~~~~~~~~~~~v~~~a~sPdg~~   65 (254)
                      .|.+|...|.+++|     ++   ++|+|||.|++|++|| .++       .+...+    . +|...|++++|+|++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l----~-~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL----T-GHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE----C-CCSSCEEEEEECSSTTE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh----c-cCCCceEEEEECCCCCE
Confidence            46799999999999     44   4799999999999999 432       234333    3 89999999999999999


Q ss_pred             EEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------
Q psy12788         66 VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------  133 (254)
Q Consensus        66 la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------  133 (254)
                      +++|+.|+ +++||+......     .....|...|++++|+|||++|++|+.|+.|++||+.......           
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~-----~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTY-----KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEE-----EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             EEEEcCCCcEEEEECCCCcEE-----EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            99999996 999997653321     1234577899999999999999999999999999975221110           


Q ss_pred             -------e----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEe
Q psy12788        134 -------K----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGD  195 (254)
Q Consensus       134 -------~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~d  195 (254)
                             .          ..+.++...++.+++||....    .......+...|.+++|+|++++ ++++.|++++|||
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ----IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE----EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc----eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence                   0          024455566889999994332    22223345678999999998865 5577899999999


Q ss_pred             cc
Q psy12788        196 LH  197 (254)
Q Consensus       196 l~  197 (254)
                      +.
T Consensus       242 ~~  243 (343)
T 2xzm_R          242 IL  243 (343)
T ss_dssp             SS
T ss_pred             CC
Confidence            94

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=7.5e-26  Score=193.87  Aligned_cols=188  Identities=12%  Similarity=0.107  Sum_probs=141.1

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CC--CCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-E
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SD--GRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~--g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-i   74 (254)
                      +.+|...|.+++|++  ++|++|+.|++|+||| ..  ++++.++.     +|..+|++++|+|+  |++||+|+.|+ +
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----cccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            568999999999997  4899999999999999 32  35565554     89999999999874  89999999996 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeee----eEee--------------
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKR----TIWK--------------  134 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~----~~~~--------------  134 (254)
                      ++||.....  +... .....|...|.+++|+|+  |++||+|+.||.|++||+..+.    ....              
T Consensus        80 ~iWd~~~~~--~~~~-~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           80 MIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEEBSSSC--BCCC-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             EEEEcCCCc--eEEE-EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999976432  1110 112346678999999998  9999999999999999986431    1100              


Q ss_pred             -------------ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCc---E-EEEEECCCcEEEEe
Q psy12788        135 -------------GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGND---R-YLVARTPDTLLLGD  195 (254)
Q Consensus       135 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~---~-~~v~~~d~~i~i~d  195 (254)
                                   +.+.++...++.+++||+.++.. ....+.  ..+...|.+++|+|++   . +++++.|++++|||
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                         12455566788999999987631 111222  2355689999999973   4 56688899999999


Q ss_pred             ccCC
Q psy12788        196 LHRN  199 (254)
Q Consensus       196 l~~~  199 (254)
                      +.++
T Consensus       236 ~~~~  239 (297)
T 2pm7_B          236 QDNE  239 (297)
T ss_dssp             ESST
T ss_pred             eCCC
Confidence            9764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=5.5e-27  Score=207.78  Aligned_cols=194  Identities=16%  Similarity=0.164  Sum_probs=147.8

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|...|++++|+|+  +|+|||.|++|+||| .+++....+.     .|...|.+++|+|+|++||+|+.|+ +++|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-----LHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----CCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-----cCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            36799999999999984  799999999999999 7788886665     6888999999999999999999996 9999


Q ss_pred             EecCCCcceee--cCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe---------------------
Q psy12788         78 AWSPSKSVWEE--QPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW---------------------  133 (254)
Q Consensus        78 d~~~~~~~~~~--~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~---------------------  133 (254)
                      ++......-..  .......|...|.++.|+|+ +.+|++|+.|++|++||+.+++...                     
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            98642211000  00122346678999999997 4579999999999999987654321                     


Q ss_pred             -eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        134 -KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                       .+.+.++...++.+++||+....  ..+.....+...|++++|+|++. +++++.|++++|||+.+++..
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence             12234455668899999997442  22333334567899999999875 556778999999999987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=7.4e-26  Score=212.60  Aligned_cols=193  Identities=11%  Similarity=0.120  Sum_probs=151.2

Q ss_pred             ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      .+.+|...|.+++|+|+   .|++||.|++|++|| ..++++.++.     +|...|++++|+|||++||+|+.|+ +++
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            46789999999999984   599999999999999 6777776664     8999999999999999999999996 999


Q ss_pred             EEecCCCcceee--cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------ecee
Q psy12788         77 FAWSPSKSVWEE--QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------KGKF  137 (254)
Q Consensus        77 ~d~~~~~~~~~~--~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------~~~~  137 (254)
                      ||..........  .......|...|++++|+|||++||+|+.|++|++||+.+++...                 .+.+
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            997543322111  001112577899999999999999999999999999987654332                 2234


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .++...++.+++|+...+   ........+...|++++|+|++++ ++++.|+++++||+.++++.
T Consensus       297 l~s~s~d~~i~~~~~~~~---~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          297 LVSISANGFINFVNPELG---SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             EEEEETTCCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeCCCcEEEEeCCCC---CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            456667889999998877   333333455678999999998865 56788999999999987653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=9e-27  Score=205.19  Aligned_cols=192  Identities=12%  Similarity=0.079  Sum_probs=140.4

Q ss_pred             ccCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          4 VQHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      .+|...|.+++|+|+ .+++++.|++|+||| .+++.......... +|...|++++|+|+|++|++|+.|+ +++||..
T Consensus        91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~  169 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS  169 (357)
T ss_dssp             EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEEC-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            468889999999984 788999999999999 66665433323333 7889999999999999999999996 9999975


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEee-------------------ceeEEE
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIWK-------------------GKFEMI  140 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~~-------------------~~~~~~  140 (254)
                      .....     .....|...|++++|+|++. ++++++.||.|++||+..++....                   +.+.++
T Consensus       170 ~~~~~-----~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          170 QKAVL-----KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             TTEEE-----EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred             CCcEE-----EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence            43321     12234677999999999985 789999999999999865543210                   112233


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EE-EEEECCCcEEEEeccCCceeeE
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RY-LVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~-~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ...++.+++||+.++.   .......+...|++++|+|++ ++ ++++.|++|+|||+.++++...
T Consensus       245 g~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          245 GDETGNVSLVNIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             EESSSCEEEEESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             eecccceeEEECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            4456789999998874   333334456789999999876 44 4678899999999999876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7e-26  Score=197.00  Aligned_cols=190  Identities=14%  Similarity=0.084  Sum_probs=136.5

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEeCC--------CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYESD--------GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~--------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      +|...|.+++|+|  ++|++|+.|++|++||..        .+++..+    . +|...|++++|+|+|++||+|+.|+ 
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~----~-~h~~~V~~v~~sp~g~~las~s~D~~  130 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII----E-GHENEVKGVAWSNDGYYLATCSRDKS  130 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE----C-----CEEEEEECTTSCEEEEEETTSC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE----c-CCCCcEEEEEECCCCCEEEEEeCCCE
Confidence            3999999999998  479999999999999842        2334333    3 7899999999999999999999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee--eeEe--e---------------
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK--RTIW--K---------------  134 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~--~~~~--~---------------  134 (254)
                      +++||.......++.. .....|...|++++|+|||++||+|+.|++|++||...+  +...  .               
T Consensus       131 v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          131 VWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             EEEEECCTTCCCCEEE-EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred             EEEEeccCCCCCeEEE-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence            9999974322222210 122346778999999999999999999999999997543  2111  0               


Q ss_pred             -ceeEEEEecCCeEEEEeCCCCCc---eeeEEEE---ecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        135 -GKFEMIYVSPSQVLVKPLSGESK---GRGVILK---SQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       135 -~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~---s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                       +.+.++...++.+++|++..+..   .......   ..+...|.+++|++++.+++++.|++++|||+.+++
T Consensus       210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred             CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence             12334555678899999865310   0001122   125568999999987778889999999999998774

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=2.3e-25  Score=192.90  Aligned_cols=223  Identities=16%  Similarity=0.161  Sum_probs=164.0

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|...|.+++|+++  +|++|+.|++|++|| .++++++.+.     +|...|.+++|+|++++|++|+.|+ +++|
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-----GHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            35689999999999984  799999999999999 7888887775     7899999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecC------CCeEEEeecCCcEEEEeeeeeeeEe----------------ec
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRD------GSRIACGGLCGSVELFESVLKRTIW----------------KG  135 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd------G~~la~g~~dg~v~iwd~~~~~~~~----------------~~  135 (254)
                      |+..  ...    .....|...|.++.|+|+      +.+|++|+.|+.|++||+...+...                ++
T Consensus       135 d~~~--~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          135 TIKG--QCL----ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG  208 (319)
T ss_dssp             ETTS--CEE----EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred             ECCC--CeE----EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence            9642  111    223456778999999994      5589999999999999986543221                13


Q ss_pred             eeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeE
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKF  215 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~  215 (254)
                      .+.++...++.+++||+.++.   .+.... ...+|.+++|+|++.+++++.++.+++|++..+.+....-....+. ..
T Consensus       209 ~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~-~~  283 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNLAAKK---AMYTLS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY-SK  283 (319)
T ss_dssp             SEEEEEETTCEEEEEETTTTE---EEEEEE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTC-CG
T ss_pred             CEEEEEeCCCeEEEEECCCCc---EEEEec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccc-cc
Confidence            345556678899999999873   222222 3468999999999999998888999999998876532211101110 00


Q ss_pred             EeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788        216 YFDNVTVCLVFNA-GELSIIEYGNNE  240 (254)
Q Consensus       216 ~~~~~~~~~~~~~-g~~~~~~~~~~~  240 (254)
                      .......++.|++ |...+....++.
T Consensus       284 ~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          284 AAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             GGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcCcceeEEEECCCCCEEEEeecCce
Confidence            0123456777877 666665555544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=9.4e-26  Score=195.06  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=134.6

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-E
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i   74 (254)
                      +.+|...|.+++|++  ++|++||.|++|+||| .+++  ++..+.     +|..+|++++|+|  +|++||+|+.|+ +
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-----GHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----CCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            468999999999987  5899999999999999 5554  344443     8999999999986  489999999996 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeee-e--Ee--e-------------
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKR-T--IW--K-------------  134 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~-~--~~--~-------------  134 (254)
                      ++||.....  +... .....|...|++++|+|+  |.+||+|+.||.|++||...+. .  ..  .             
T Consensus        84 ~iWd~~~~~--~~~~-~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           84 IIWREENGT--WEKS-HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             EEECCSSSC--CCEE-EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             EEEECCCCc--ceEE-EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            999975422  1110 112346778999999998  8999999999999999986431 1  00  0             


Q ss_pred             ------------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCc-----EEEEEECCC
Q psy12788        135 ------------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGND-----RYLVARTPD  189 (254)
Q Consensus       135 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~-----~~~v~~~d~  189 (254)
                                        +.+.++...++.+++||+..+.  ....+..  .+...|.+++|+|++     .+++++.|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence                              1233444457789999997542  2122332  345579999999864     467788999


Q ss_pred             cEEEEeccC
Q psy12788        190 TLLLGDLHR  198 (254)
Q Consensus       190 ~i~i~dl~~  198 (254)
                      +++|||+.+
T Consensus       239 ~v~iw~~~~  247 (316)
T 3bg1_A          239 RVFIWTCDD  247 (316)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEEccC
Confidence            999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=1.1e-25  Score=197.66  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=140.7

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d   78 (254)
                      .+|...|.+|+|+|+  +|++|+.|++|++|| .++++++++.     +|...|++++|+|++. +|++|+.|+ +++||
T Consensus       124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd  198 (344)
T 4gqb_B          124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWD  198 (344)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CcCCceEEEEecCCCCCceeeecccccccccc
Confidence            479999999999984  799999999999999 7888887765     8999999999999985 789999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe----------------ec-eeEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW----------------KG-KFEMI  140 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~----------------~~-~~~~~  140 (254)
                      ....+....   .....+...+++++|+|+ +++||+|+.||.|++||+.+++.+.                ++ .+.++
T Consensus       199 ~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las  275 (344)
T 4gqb_B          199 TRCPKPASQ---IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS  275 (344)
T ss_dssp             TTSSSCEEE---CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             ccccceeee---eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence            765433211   111223457999999995 5688999999999999987654332                11 23455


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-E-EEEECCCcEEEEeccCCce
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-Y-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~-~v~~~d~~i~i~dl~~~~~  201 (254)
                      ...|+.+++||+.++   +...+ ..|...|++++|+|+++ + ++++.|++|++|++.+..+
T Consensus       276 gs~D~~i~vwd~~~~---~~~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          276 LSEDCSLAVLDSSLS---ELFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EETTSCEEEECTTCC---EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EeCCCeEEEEECCCC---cEEEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            566788999999887   33333 34567899999999774 4 4578899999999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=1.5e-24  Score=186.53  Aligned_cols=187  Identities=13%  Similarity=0.135  Sum_probs=142.7

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCC-----EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGR-----VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~-----~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      .|.+|...|.+|+|+|   ++|+|||.|++|+||| .+++     +.+.+    . +|...|++++|+|+|++|++|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l----~-~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL----R-GHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE----C-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE----e-CCCCCEEEEEECCCCCEEEEEccc
Confidence            4779999999999987   3799999999999999 4432     33333    3 799999999999999999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------  133 (254)
                      + +++|+.......     .....+...+..+.++|++++|++|+.|+.+++||........                  
T Consensus       108 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          108 GTLRLWDLTTGTTT-----RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             ccceEEeeccccee-----eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence            6 889986432221     1223455678899999999999999999999999974322110                  


Q ss_pred             -eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788        134 -KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       134 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                       ...+.++...+..+++||+.++   ........+...|++++|+|++++ ++++.|++++|||+.+++.
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence             0112344456778999999988   333333445678999999998765 5678899999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.1e-25  Score=190.27  Aligned_cols=193  Identities=11%  Similarity=0.104  Sum_probs=137.5

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|..+|.+++|++++|++|+.|++|++|| ..+  +++..+.  .. +|...|++++|+|+|++||+|+.|+ ++||
T Consensus         9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~--~~-~h~~~v~~v~~sp~~~~las~s~D~~v~iw   85 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD--ET-AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW   85 (330)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC--TT-CCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe--cC-CccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            46789999999999999999999999999999 443  3343331  11 3888999999999999999999996 9999


Q ss_pred             EecCCCc---ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-e---eeEe----------------e
Q psy12788         78 AWSPSKS---VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-K---RTIW----------------K  134 (254)
Q Consensus        78 d~~~~~~---~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~---~~~~----------------~  134 (254)
                      +......   ..... .....|...|++++|+|||++||+|+.|++|++||+.. +   +...                +
T Consensus        86 ~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X           86 AKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             EC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred             EcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence            9742111   11110 11234677999999999999999999999999999831 1   1110                1


Q ss_pred             ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecC--c-EEEEEECCCcEEEEeccCC
Q psy12788        135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGN--D-RYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~--~-~~~v~~~d~~i~i~dl~~~  199 (254)
                      +.+.++...++.+++|+..++.. ..+.....+...|.+++|+|+  + .+++++.|++++|||+..+
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            23445556678899999876520 112222345568999999986  3 4667889999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.5e-25  Score=195.49  Aligned_cols=180  Identities=12%  Similarity=0.126  Sum_probs=143.8

Q ss_pred             cccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+|...|.++.|.+ +.|++++.|++|++|| .+++++..+.     +|...|++++|+|++++|++|+.|+ +++||.
T Consensus       139 ~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            568999999999986 4799999999999999 7888886664     7889999999999999999999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeEEEE
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFEMIY  141 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~~~~  141 (254)
                      ......     .....|...|++++|+|+|++||+|+.||.|++||+..++...                  ++.+.++.
T Consensus       214 ~~~~~~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  288 (340)
T 1got_B          214 REGMCR-----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             TTCSEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCeeE-----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence            543321     1223467789999999999999999999999999986543221                  12334455


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                      ..++.+++||+.++.   .......+...|.+++|+|++. +++++.|++|+|||
T Consensus       289 ~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          289 YDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            567789999998873   3333345667899999999886 56688899999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=1.4e-24  Score=189.80  Aligned_cols=189  Identities=14%  Similarity=0.114  Sum_probs=140.1

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+|...|.+++|+|+  +|++|+.|++|++|| ..+.  ++..+.     +|...|++++|+|+|++||+|+.|+ +++|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-----GHENEVKSVAWAPSGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----CCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence            479999999999984  799999999999999 4443  444443     7999999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----e--------------eceeEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----W--------------KGKFEM  139 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----~--------------~~~~~~  139 (254)
                      |+.........  .....|...|++++|+|+|++||+|+.|+.|++||...++..    .              ++.+.+
T Consensus       133 d~~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          133 EVDEEDEYECV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             EECTTSCEEEE--EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ECCCCCCeEEE--EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence            98653321111  122346678999999999999999999999999998654211    0              123455


Q ss_pred             EEecCCeEEEEeCCCCCc-------------eeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCC
Q psy12788        140 IYVSPSQVLVKPLSGESK-------------GRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~-------------~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~  199 (254)
                      +...++.+++|+...+..             .....+...+...|.+++|++++. +++++.|+++++||+..+
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            566778899998643210             001112223556899999998765 667888999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=3.2e-25  Score=210.74  Aligned_cols=190  Identities=15%  Similarity=0.125  Sum_probs=148.9

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ++.+|...|.+++|+++  +|++||.|++|+||| .++++++.+.     +|...|++++|+|+|++|++|+.|+ +++|
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-----GHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-----CCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            46789999999999984  799999999999999 7888887765     7899999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEeeeeeeeEe----------------eceeEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFESVLKRTIW----------------KGKFEM  139 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~  139 (254)
                      |..... .... ......|...|++++|+|++  .+|++|+.||.|++||+..++...                ++.+.+
T Consensus       500 d~~~~~-~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~  577 (694)
T 3dm0_A          500 NTLGEC-KYTI-SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA  577 (694)
T ss_dssp             CTTSCE-EEEE-CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ECCCCc-ceee-ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence            953211 1111 01112456789999999997  589999999999999986543321                123445


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +...++.+++||+.++.   .+ ..-.....|..++|+|++.+++++.++.|+|||++++++.
T Consensus       578 sg~~Dg~i~iwd~~~~~---~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGK---KL-YSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV  636 (694)
T ss_dssp             EEETTSBCEEEETTTTE---EE-ECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred             EEeCCCeEEEEECCCCc---eE-EEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence            55667889999999883   22 2223345799999999999999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=2.9e-24  Score=183.66  Aligned_cols=188  Identities=10%  Similarity=0.148  Sum_probs=138.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC----EEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~----~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~   73 (254)
                      +.+|...|.+++|+|+  +|++|+.|++|++|| .++.    ....+.     +|...|++++|+|  |+++|++|+.|+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----CCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-----cCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            5689999999999984  799999999999999 5442    444443     7889999999999  699999999996


Q ss_pred             -EEEEEecCCCcc-----eeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeeeEe------------
Q psy12788         74 -IKLFAWSPSKSV-----WEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRTIW------------  133 (254)
Q Consensus        74 -i~l~d~~~~~~~-----~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~~~------------  133 (254)
                       +++||+......     +... .....+...|++++|+|+  |++|++++.||.|++||+..++...            
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKL-CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             eEEEEecCCCcccccccCccee-eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence             999998754321     1110 122346678999999999  9999999999999999986543211            


Q ss_pred             --------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCc----E-EEEEE
Q psy12788        134 --------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGND----R-YLVAR  186 (254)
Q Consensus       134 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~----~-~~v~~  186 (254)
                                          .+.+.++...++.+++++...+   ....+..  .+...|++++|+|++    . +++++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                                0223333344455555555555   2222332  345689999999985    4 56688


Q ss_pred             CCCcEEEEeccCC
Q psy12788        187 TPDTLLLGDLHRN  199 (254)
Q Consensus       187 ~d~~i~i~dl~~~  199 (254)
                      .|++|+|||+.++
T Consensus       238 ~dg~i~iwd~~~~  250 (351)
T 3f3f_A          238 KDGRIRIFKITEK  250 (351)
T ss_dssp             TTSCEEEEEEEEC
T ss_pred             CCCeEEEEeCCCC
Confidence            8999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=1.7e-24  Score=205.86  Aligned_cols=187  Identities=16%  Similarity=0.152  Sum_probs=144.7

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CC-----CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SD-----GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~-----g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      .|.+|...|.+|+|++   ++|+|||.|++|++|| ..     +.+.+.+.     +|...|++++|+|+|++|++|+.|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----GHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-----CCCCcEEEEEECCCCCEEEEEeCC
Confidence            4679999999999986   4799999999999998 33     23344443     899999999999999999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------  133 (254)
                      + ++|||+......     .....|...|++++|+|||++|++|+.|++|++||........                  
T Consensus       452 g~v~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          452 GELRLWDLAAGVST-----RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             SEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             CcEEEEECCCCcce-----eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            6 999997543221     1234577899999999999999999999999999964221100                  


Q ss_pred             -e--ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788        134 -K--GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       134 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                       .  ..+.++...++.+++||+.++.   .......+...|.+++|+|++++ ++++.|++|+|||+.+++.
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence             0  1234555668899999998873   33333445678999999998865 5677899999999998864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=2.8e-24  Score=191.21  Aligned_cols=188  Identities=15%  Similarity=0.188  Sum_probs=137.2

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCC-------------CCCCCEEEEEECCCCCEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-------------YKEREFTVACSSPSGQAVV   67 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~-------------~~~~~v~~~a~sPdg~~la   67 (254)
                      .+|...|.+++|+|+  +|++|+ |+++++|+ .+|+.+..+......             .+...|++++|+|+|++||
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            369999999999985  677765 78999999 788887666421100             0122499999999999999


Q ss_pred             EEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------------
Q psy12788         68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------------  133 (254)
Q Consensus        68 ~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------------  133 (254)
                      +|+.|+ +++||+......     .....|...|++++|+|||++|++|+.|+.|++||+.+++...             
T Consensus       140 s~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  214 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIV-----MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  214 (393)
T ss_dssp             EEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEE-----EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEE
Confidence            999996 999997543221     1223567789999999999999999999999999987654321             


Q ss_pred             ---eceeEEEEecCCeEEEEeCCCCCceeeEEEE------ecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC
Q psy12788        134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILK------SQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN  199 (254)
Q Consensus       134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~------s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~  199 (254)
                         ++.+.++...++.+++||+.++.  ....+.      ..+...|.+++|++++++ ++++.|++++|||+.+.
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence               22344555567889999998873  111121      234568999999998864 56778999999999753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-23  Score=181.24  Aligned_cols=187  Identities=16%  Similarity=0.142  Sum_probs=149.6

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      +|.+|..+|.+++|+|+  +|++++.|+.|++|| .+++++..+.     +|...|++++|+|++++|++++.|+ +++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-----GHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-----hcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            46799999999999984  799999999999999 7888887664     7889999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-----CcEEEEeeeeeeeE--------------------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-----GSVELFESVLKRTI--------------------  132 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~~~~~~--------------------  132 (254)
                      |+......      ..+.+...|.+++|+|+|++|++++.+     |.|++||+..++..                    
T Consensus       102 d~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          102 DVSNGQCV------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             ETTTCCEE------EEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             ECCCCcEE------EEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            97654332      223366789999999999999999999     99999998654210                    


Q ss_pred             ---------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce
Q psy12788        133 ---------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       133 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                               .++.+.++...++.+.+||+.++.  ........+...|..++|++++.+ ++++.|+.+++||+.++++
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence                     012344555667899999998842  344444456678999999998864 5677899999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=3.6e-24  Score=197.77  Aligned_cols=182  Identities=16%  Similarity=0.174  Sum_probs=134.3

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +|.+|...|.+|+|+|+  +||+|+.|++|+|||.+|++++++.     +|...|++++|+|||++||+++.|+ +++||
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~-----gh~~~V~~l~fspdg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVWGVAFSPDGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEe-----CCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            58899999999999985  7999999999999999899998876     8999999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~  143 (254)
                      +..  ...    .....|...|.+++|+|||++|++++.|+.+++|+.........               .........
T Consensus        86 ~~~--~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  159 (577)
T 2ymu_A           86 RNG--QLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD  159 (577)
T ss_dssp             TTS--CEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCC--CEE----EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccc
Confidence            532  111    12234677999999999999999999999999999643322110               111222333


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                      +..+.+++....    .......+...|..+.++++++ +++++.|+++++||...
T Consensus       160 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~  211 (577)
T 2ymu_A          160 DKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG  211 (577)
T ss_dssp             TSEEEEECTTSC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             ccceecccccee----eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC
Confidence            445556654332    2233334456777777877665 44566677888887543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=7.4e-25  Score=192.56  Aligned_cols=180  Identities=15%  Similarity=0.193  Sum_probs=143.1

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~l   76 (254)
                      +.+|...|.+++|+++  .|++++.|++|++|| .+++++..+.     +|...|.+++|+|  +|++|++|+.|+ +++
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~  224 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-----GHGADVLCLDLAPSETGNTFVSGGCDKKAMV  224 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            4579999999999974  799999999999999 8889887775     7888999999988  578999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------eceeE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKFE  138 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~~  138 (254)
                      ||.......     .....|...|++++|+|+|++||+|+.|++|++||++.++...                  .+.+.
T Consensus       225 wd~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          225 WDMRSGQCV-----QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             EETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             EECCCCcEE-----EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            997653321     1123467789999999999999999999999999986543221                  12234


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                      ++...++.+++||+.++.   .+.....+...|.+++|+|+++ +++++.|++++||+
T Consensus       300 ~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            445567789999998873   3433345667899999999886 45678899999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=5e-24  Score=182.71  Aligned_cols=187  Identities=14%  Similarity=0.259  Sum_probs=141.2

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+|+  +|++|+.|++|++|| .+++++..+.     +|...|.+++|+|++++|++|+.|+ +++||
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            5679999999999984  799999999999999 7888887775     7888999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------eceeEEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------KGKFEMIY  141 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------~~~~~~~~  141 (254)
                      .......     .....|..+|++++|+|+|++|++|+.||.|++||+..++...                 .+.+.++.
T Consensus       136 ~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          136 VKTGKCL-----KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             TTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCEEE-----EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence            7643321     1123456789999999999999999999999999986554321                 12234455


Q ss_pred             ecCCeEEEEeCCCCCceeeEEEEecCCCcee--EEEEe-cCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        142 VSPSQVLVKPLSGESKGRGVILKSQYGYEIT--DVAIM-GNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~--~i~~~-~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ..++.+++||+.++   ........+...+.  ...++ +++. +++++.|++|++||+.++++.
T Consensus       211 ~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          211 TLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             ETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred             cCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence            56788999999887   33322222222222  23344 3444 455677999999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=1.1e-24  Score=192.91  Aligned_cols=192  Identities=13%  Similarity=0.157  Sum_probs=146.6

Q ss_pred             cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l   76 (254)
                      +.+|...|.+++|.|+   .|++||.|++|++|| .+|+++..+......+|...|.+++|+| ++++|++|+.|+ +++
T Consensus       153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            5689999999999873   699999999999999 7888887763222116888999999987 899999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------------  133 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------------  133 (254)
                      ||+.......    .....|...|++++|+|||++|++|+.||+|++||+.+++...                       
T Consensus       233 wd~~~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          233 WDLRITSRAV----RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             EETTTTCCCC----EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             EECCCCCcce----EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence            9975322211    1224577899999999999999999999999999987654321                       


Q ss_pred             eceeEEEEecCCeEEEEeCCCCCceeeEEEE---ecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc
Q psy12788        134 KGKFEMIYVSPSQVLVKPLSGESKGRGVILK---SQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~  200 (254)
                      .+.+.++...++.+.+||+..+.  ....+.   ..+...|.+++|+|++.++ +++.|++++|||+..++
T Consensus       309 ~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          309 SGRLLFAGYSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSSEEEEECTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEEECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            12334445567789999998774  222221   2355689999999988655 56779999999987654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=5.3e-24  Score=184.36  Aligned_cols=215  Identities=13%  Similarity=0.144  Sum_probs=154.2

Q ss_pred             cccCCCCCEEEEecCC-----eEEEEeCCCcEEEEe-CC-CCEE-EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-
Q psy12788          3 VVQHPVPPYALSWPAG-----YILAAGSDRIVTIYE-SD-GRVH-RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~-----~l~s~s~D~~i~vWd-~~-g~~~-~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-   73 (254)
                      +.+|...|.+++|+|+     +|++|+.|++|++|| .+ ++.+ ..+.     +|...|++++|+|++++|++|+.|+ 
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEECcCCCEEEEEcCCCc
Confidence            5689999999999984     699999999999999 54 5555 4443     6888999999999999999999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEE--ecCCCeEEEeecCCcEEEEeeeeeeeEeec----------------
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW--KRDGSRIACGGLCGSVELFESVLKRTIWKG----------------  135 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdG~~la~g~~dg~v~iwd~~~~~~~~~~----------------  135 (254)
                      +++||+.....      .....|...|++++|  +|+|++|++++.||.|++||+..++....-                
T Consensus       110 v~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          110 AKMWDLSSNQA------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA  183 (368)
T ss_dssp             EEEEETTTTEE------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred             EEEEEcCCCCc------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence            99999754321      223457789999999  999999999999999999998654321100                


Q ss_pred             ---------------------------------------------eeEEEEecCCeEEEEeCCCCCc-eeeEEEEecCC-
Q psy12788        136 ---------------------------------------------KFEMIYVSPSQVLVKPLSGESK-GRGVILKSQYG-  168 (254)
Q Consensus       136 ---------------------------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~-  168 (254)
                                                                   ...++...++.+.+|++..... .....+..+.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence                                                         0023344566778888876521 02222322211 


Q ss_pred             ----------CceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEe
Q psy12788        169 ----------YEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEY  236 (254)
Q Consensus       169 ----------~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~  236 (254)
                                ..|.+++|+|+++ +++++.|+.|+|||+.+++.....-. .        ..++.++.|++ |...+..-
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~--------~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-L--------DQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-C--------SSCEEEEEECTTSSCEEEEE
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-C--------CCCceEEEECCCCCeEEEEe
Confidence                      1599999999875 55677899999999998876433211 1        23467788887 55555544


Q ss_pred             e
Q psy12788        237 G  237 (254)
Q Consensus       237 ~  237 (254)
                      +
T Consensus       335 ~  335 (368)
T 3mmy_A          335 S  335 (368)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=2.6e-24  Score=186.42  Aligned_cols=221  Identities=13%  Similarity=0.100  Sum_probs=157.6

Q ss_pred             CCCCCEEEEecCC------eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788          6 HPVPPYALSWPAG------YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL   76 (254)
Q Consensus         6 h~~~v~~l~w~~~------~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l   76 (254)
                      |...|.+++|+++      +|++|+.|++|++|| .+++++..+.     +|...|++++|+| ++++|++|+.|+ +++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i  142 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDHALRL  142 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            6788999999875      699999999999999 7788887775     7888999999999 999999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE------------------------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI------------------------  132 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~------------------------  132 (254)
                      ||+.........  .....+...|++++|+|+|++|++++.||.|++||+..++..                        
T Consensus       143 wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          143 WNIQTDTLVAIF--GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             EETTTTEEEEEE--CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             EEeecCeEEEEe--cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            997643321111  001346779999999999999999999999999998654321                        


Q ss_pred             ------------------eeceeEEEEecCCeEEEEeCCCCCc-----------eeeEEEEecCCCceeEEEEecC--cE
Q psy12788        133 ------------------WKGKFEMIYVSPSQVLVKPLSGESK-----------GRGVILKSQYGYEITDVAIMGN--DR  181 (254)
Q Consensus       133 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~s~~~~~i~~i~~~~~--~~  181 (254)
                                        +.+.+.++...++.+++||+.++..           ...+.....+...|..++|+++  ++
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  300 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK  300 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred             cCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence                              1134555666788999999877631           0112222334567999999988  76


Q ss_pred             EEE-EECCCcEEEEeccCCceee---EeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEeecC
Q psy12788        182 YLV-ARTPDTLLLGDLHRNLLSE---VLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYGNN  239 (254)
Q Consensus       182 ~~v-~~~d~~i~i~dl~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~  239 (254)
                      +++ ++.|+.|++||+.+++...   ..+... .+     ...+.++.|++ |.+.+....+.
T Consensus       301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~-----~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH-KC-----GAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             EEEEECTTSCEEEEECCSSSGGGCEEEEECCT-TC-----CSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEecCCcEEEEECCCCCCccccceEEccc-cc-----CCceEEEEeCCCCCeEEEEeCCC
Confidence            554 6678999999999875321   122211 00     13466777776 44444444333

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=8.4e-24  Score=198.57  Aligned_cols=187  Identities=9%  Similarity=0.069  Sum_probs=141.1

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---E
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~---i   74 (254)
                      +.+|...|.+++|+|+  +||+|+.|++|+||| .+++  +...+.     +|..+|.+++|+|||++||+++.+.   .
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-----~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-----ccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            5689999999999984  799999999999999 4443  343443     7888999999999999999988652   3


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeeeeEe----------------ecee
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKRTIW----------------KGKF  137 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~~~~----------------~~~~  137 (254)
                      ++|.|+.....     .....|...|++++|+||+. +||+|+.|++|++||...++...                ++.+
T Consensus       130 ~v~~wd~~~~~-----~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~  204 (611)
T 1nr0_A          130 HVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  204 (611)
T ss_dssp             EEEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEeeCCCCc-----ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence            56665543321     12245677999999999997 59999999999999975543321                1234


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEe------cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKS------QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s------~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .++...++.+++||+.++.  ....+..      .+...|.+++|+|+++ +++++.|++++|||+.++++
T Consensus       205 las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            4556667889999998874  2222212      3566899999999886 55688899999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=2.3e-23  Score=185.26  Aligned_cols=184  Identities=18%  Similarity=0.230  Sum_probs=138.0

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCC
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      ..|.+++|+|+  +|++|+.|++|++|| .+++++..+.     +|...|++++|+|+|++|++|+.|+ +++||+....
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            34889999984  799999999999999 6777776554     7999999999999999999999996 9999975432


Q ss_pred             cceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-----------------------eceeEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-----------------------KGKFEM  139 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-----------------------~~~~~~  139 (254)
                      .      ...+.+...+.+++|+| ||++||+|+.||.|++||..+++...                       ++.+.+
T Consensus       199 ~------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          199 C------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             E------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             e------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            2      12234556799999999 99999999999999999976543221                       123445


Q ss_pred             EEecCCeEEEEeCCCCCc---------eeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        140 IYVSPSQVLVKPLSGESK---------GRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~---------~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +...++.+++||+.+...         +........+...|.++++++++++ ++++.|+++++||+.+++..
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            556678999999875421         0111122234567999999998865 55778999999999988753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=9e-24  Score=187.48  Aligned_cols=189  Identities=13%  Similarity=0.128  Sum_probs=142.2

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+|+  .|++|+.|++|++|| .+++++..+.     +|...|++++|+|+|++|++|+.|+ +++||
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            4589999999999984  799999999999999 7788877765     7889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCC---------------------CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----
Q psy12788         79 WSPSKSVWEEQPNKTIPN---------------------LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~---------------------~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----  133 (254)
                      +.........  .....+                     ...+++++|+|||++|++|+.||.|++||+..++...    
T Consensus       210 ~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          210 CGTGTTIHTF--NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             TTTTEEEEEE--CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CCCCceeEEe--ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence            7644332211  000011                     2345666678999999999999999999986544321    


Q ss_pred             -------------ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCC
Q psy12788        134 -------------KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       134 -------------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~  199 (254)
                                   .+. +.++...++.+++||+.++.. ....+..+++..|..+.+.+...+++++.|++++|||+...
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence                         112 445556678999999988741 13455556777899997764334566777999999998874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=1e-23  Score=187.19  Aligned_cols=178  Identities=16%  Similarity=0.180  Sum_probs=138.7

Q ss_pred             EEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcce
Q psy12788         11 YALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVW   86 (254)
Q Consensus        11 ~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~   86 (254)
                      ....|++  ++|++|+.|++|++|| .++++...+    . +|...|++++|+|+|++|++|+.|+ +++||+...... 
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-  174 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID----Q-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-  174 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET----T-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec----c-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-
Confidence            3345665  5899999999999999 666666433    3 7889999999999999999999996 999997654332 


Q ss_pred             eecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------------------------
Q psy12788         87 EEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------------------------  133 (254)
Q Consensus        87 ~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------------------------  133 (254)
                          .....|...|++++|+|||++|++|+.||.|++||+..++...                                 
T Consensus       175 ----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          175 ----RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             ----EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             ----eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence                1223467899999999999999999999999999987554332                                 


Q ss_pred             -------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788        134 -------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~  200 (254)
                             ++.+.++...++.+.+||+.++.  ....+...+...|.+++|+|++.  +++++.|+.+++||+.+++
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence                   12345556677889999999874  33334344567899999999875  5667889999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=2.2e-23  Score=181.46  Aligned_cols=190  Identities=14%  Similarity=0.182  Sum_probs=147.2

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|...|.+++|+|  ++|++++.|++|++|| .+++....+.  .. .|...|++++|+|+|++|++|+.|+ +++|
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--IL-RINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE--CC-CCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE--ee-cCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            3568999999999997  4799999999999999 6666554432  23 6788999999999999999999986 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee------------------eeeeEe------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV------------------LKRTIW------  133 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~------------------~~~~~~------  133 (254)
                      |+......+.. ......+...|++++|+|||++|++|+.||.|++||+.                  .++...      
T Consensus       124 d~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          124 YFEQENDWWVC-KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             EEETTTTEEEE-EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             EecCCCcceee-eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            98765432211 12223456789999999999999999999999999953                  222211      


Q ss_pred             ----------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        134 ----------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                                ++.+.++...++.+++||+.++.   .+.....+...|.+++|++++++++++.|+.+++||+.+
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence                      12244455567889999998874   333334456689999999999999888999999999988

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=4e-24  Score=188.24  Aligned_cols=183  Identities=16%  Similarity=0.141  Sum_probs=140.6

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d   78 (254)
                      .+|...|.+|+|+|+  +|++|+.|++|++|| .+++++..+.     +|...|++++|+|+++ ++++++.|+ +++||
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence            479999999999984  799999999999999 7788886664     7889999999999985 788999885 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe----------------e-ceeEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW----------------K-GKFEMI  140 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~----------------~-~~~~~~  140 (254)
                      +...+....   .....+...+++++|+|+ +.+||+|+.|+.|++||+..++...                . ..+.++
T Consensus       211 ~~~~~~~~~---~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          211 TRKPKPATR---IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             TTSSSCBCB---CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             CCCCceeee---eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence            754332211   112234567999999998 5689999999999999986543321                1 124455


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec-Cc-EEEEEECCCcEEEEeccC
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-ND-RYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~-~~~v~~~d~~i~i~dl~~  198 (254)
                      ...++.+++||+.++   +.+.. -.+...|++|+|+| ++ .+++++.|++|++||+.+
T Consensus       288 gs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          288 ISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            566788999999887   33332 24567899999998 45 466788999999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-23  Score=182.65  Aligned_cols=190  Identities=13%  Similarity=0.102  Sum_probs=142.6

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-   73 (254)
                      .+.+|...|.+++|+|  ++|++|+.|++|++|| .  +++++..+.     +|...|++++|+|+  +++|++|+.|+ 
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4678999999999998  4799999999999999 4  334554443     78899999999988  99999999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeee----Ee--------------
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRT----IW--------------  133 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~----~~--------------  133 (254)
                      +++||+....  +... .....+...|++++|+|+  |++|++++.||.|++||+..+..    ..              
T Consensus        81 v~iwd~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           81 VLIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             EEEEEEETTE--EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             EEEEEcCCCc--eeEe-eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            9999986532  2110 122346678999999999  99999999999999999864311    00              


Q ss_pred             -------------eceeEEEEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEecC---cEE-EEEECCCcEEEEe
Q psy12788        134 -------------KGKFEMIYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMGN---DRY-LVARTPDTLLLGD  195 (254)
Q Consensus       134 -------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~~---~~~-~v~~~d~~i~i~d  195 (254)
                                   ++.+.++...++.+++||+.++... ........+...|.+++|+|+   +.+ ++++.|++++|||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                         1334445556778999999876411 111122235568999999998   654 5677899999999


Q ss_pred             ccCC
Q psy12788        196 LHRN  199 (254)
Q Consensus       196 l~~~  199 (254)
                      +.++
T Consensus       238 ~~~~  241 (379)
T 3jrp_A          238 QDNE  241 (379)
T ss_dssp             ESST
T ss_pred             CCCC
Confidence            9876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=2.3e-24  Score=194.06  Aligned_cols=193  Identities=8%  Similarity=-0.000  Sum_probs=138.1

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l   76 (254)
                      ...|...|++|+|+|   ++||+|+.|++|+||| ..++....+  ... +|...|++++|+| ++++|++|+.|+ +++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~--~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI--KGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE--CCC-SSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE--Ecc-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            346888899999987   3799999999999999 555433222  233 7999999999999 689999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------ece-eEEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGK-FEMI  140 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~-~~~~  140 (254)
                      ||+....  .... .....+...+.+++|+|||++|++|+.||.|++||+..+....               .+. +.++
T Consensus       192 wd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          192 QDFKGNI--LRVF-ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EETTSCE--EEEE-ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             eeccCCc--eeEE-eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE
Confidence            9975321  1110 0011123468899999999999999999999999975332110               111 2334


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ...++.+++||+.+......+.....+...|++++|+|++. +++++.|++|+|||+.++.+
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence            55678899999976531111222223456899999999875 45678899999999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.3e-23  Score=194.09  Aligned_cols=208  Identities=14%  Similarity=0.170  Sum_probs=152.9

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+|...|.+++|+|+  .|++++.|++|++||.+++++..+.     +|...|++++|+|||++||+|+.|+ +++||.
T Consensus       340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  414 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec-----CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            5678999999999984  7999999999999998898887775     7888999999999999999999996 899984


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE--e-------------eceeEEEEecC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI--W-------------KGKFEMIYVSP  144 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~--~-------------~~~~~~~~~~~  144 (254)
                      +  ....    .....|...|++++|+||+++||+++.|+.|++||...+...  .             ++.+.++...+
T Consensus       415 ~--~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          415 N--GQLL----QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             T--CCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             C--CCEE----EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            2  2111    123456778999999999999999999999999996322111  0             12344455567


Q ss_pred             CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEE
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVC  223 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~  223 (254)
                      +.+++|+.. +   ..+.....+..+|++++|+|+++++ +++.|++|+|||.....+..+.=  .        .+.+.+
T Consensus       489 ~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h--------~~~v~~  554 (577)
T 2ymu_A          489 KTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--------SSSVWG  554 (577)
T ss_dssp             SEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--C--------SSCEEE
T ss_pred             CEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--C--------CCCEEE
Confidence            789999964 3   2222233456789999999988754 57789999999964333322221  1        234667


Q ss_pred             EEEeC-CeeEEEE
Q psy12788        224 LVFNA-GELSIIE  235 (254)
Q Consensus       224 ~~~~~-g~~~~~~  235 (254)
                      +.|++ |...+..
T Consensus       555 ~~fs~dg~~l~s~  567 (577)
T 2ymu_A          555 VAFSPDGQTIASA  567 (577)
T ss_dssp             EEECTTSSCEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            77777 5544443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=1.2e-22  Score=183.17  Aligned_cols=187  Identities=12%  Similarity=0.156  Sum_probs=147.4

Q ss_pred             ccccCCCCC-EEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPP-YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v-~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+.+|...| .++.+++++|++|+.|++|++|| .+++++..+.     +|...|++++|+|++ +|++|+.|+ +++||
T Consensus       116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            356888775 78888889999999999999999 7888886664     799999999999998 899999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEe--cCCCeEEEeecCCcEEEEeeeeeeeE------------------------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWK--RDGSRIACGGLCGSVELFESVLKRTI------------------------  132 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdG~~la~g~~dg~v~iwd~~~~~~~------------------------  132 (254)
                      +......     .....|...|++++|+  |++++|++|+.||.|++||+..++..                        
T Consensus       190 ~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
T 3v7d_B          190 IKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  264 (464)
T ss_dssp             TTTTEEE-----EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred             CCCCcEE-----EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence            7643321     1223467899999999  58899999999999999998654311                        


Q ss_pred             -------------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        133 -------------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       133 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                                   ..+.+.++...++.+++||+.++   ..+.....+...|.+++|++++. +++++.|+++++||+.+
T Consensus       265 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence                         11234455667889999999987   34444444567899999999775 56678899999999998


Q ss_pred             Ccee
Q psy12788        199 NLLS  202 (254)
Q Consensus       199 ~~~~  202 (254)
                      ++..
T Consensus       342 ~~~~  345 (464)
T 3v7d_B          342 GELM  345 (464)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            8754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=7e-24  Score=187.31  Aligned_cols=182  Identities=13%  Similarity=0.124  Sum_probs=134.1

Q ss_pred             CCCCCEEEEecCC--eEE--EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEec
Q psy12788          6 HPVPPYALSWPAG--YIL--AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWS   80 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~--s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~   80 (254)
                      +...+..++|+|+  +|+  +++.|++|+||| .+++++..+.      |..+|++++|+|||++||+++.+++++|+..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~  205 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE------TRGEVKDLHFSTDGKVVAYITGSSLEVISTV  205 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSSEEEEECSSCEEEEETT
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC------CCCceEEEEEccCCceEEeccceeEEEEEec
Confidence            3445788999985  454  555799999999 7888876653      5568999999999999999998888788755


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeeeeeE-------e-------------ece
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKRTI-------W-------------KGK  136 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~~~~-------~-------------~~~  136 (254)
                      .......   .....+...|.+++|+|||+++++++.|+    .+++||.......       .             +++
T Consensus       206 ~~~~~~~---~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          206 TGSCIAR---KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE  282 (365)
T ss_dssp             TCCEEEE---ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred             cCcceee---eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence            4332211   11234556899999999999999999988    5778886432110       0             233


Q ss_pred             eEEEEecCCeEEEEeCCCCCceeeEE-EEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC
Q psy12788        137 FEMIYVSPSQVLVKPLSGESKGRGVI-LKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN  199 (254)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~  199 (254)
                      +..+...++.+++||+.++   ..+. +...|...|++|+|+|+++++ +++.|++|+|||+..+
T Consensus       283 ~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            4555566788999999988   3332 223456789999999998765 5788999999999754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=6.8e-23  Score=178.34  Aligned_cols=188  Identities=12%  Similarity=0.090  Sum_probs=142.3

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ..|..+|.+++|+|+  +|++++.|++|++|| .+++  ++..+.     +|...|++++|+|+|++|++++.|+ +++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-----CCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            458999999999984  799999999999999 5555  666654     7888999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--------------ecee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--------------KGKF  137 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--------------~~~~  137 (254)
                      |+....  +... .....+...|++++|+|||++|++|+.||.|++||...++.      ..              ++.+
T Consensus        80 d~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           80 TLKGRT--WKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEETTE--EEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             ECCCCe--eeee-EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            986432  1110 12244667899999999999999999999999999875431      10              1123


Q ss_pred             EEEEecCCeEEEEeCC------------------CCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        138 EMIYVSPSQVLVKPLS------------------GESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~------------------~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                      .++...++.+++||+.                  .+   ..+.....+...|.+++|++++. +++++.|+++++||+.+
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG---ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT---CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchh---hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            3444557789999964                  33   22222224456899999999875 56678899999999998


Q ss_pred             Ccee
Q psy12788        199 NLLS  202 (254)
Q Consensus       199 ~~~~  202 (254)
                      ++..
T Consensus       234 ~~~~  237 (372)
T 1k8k_C          234 KMAV  237 (372)
T ss_dssp             TTEE
T ss_pred             Ccee
Confidence            8754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=3.7e-23  Score=183.69  Aligned_cols=188  Identities=15%  Similarity=0.195  Sum_probs=141.7

Q ss_pred             ccccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCC-------CEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEE
Q psy12788          2 RVVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDG-------RVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVG   69 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g-------~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~g   69 (254)
                      .+.+|...|.+++|+|   ++|++|+.|++|++|| .++       +++..+.     +|...|++++|+|+| ++|++|
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEECSSBTTEEEEE
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEECcCCCCEEEEE
Confidence            3568999999999987   3799999999999999 555       4555554     788999999999998 699999


Q ss_pred             eCCc-EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788         70 SYDN-IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-------------  134 (254)
Q Consensus        70 s~d~-i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-------------  134 (254)
                      +.|+ +++||+.......    ... ..|...|++++|+|||++|++++.||.|++||+..++....             
T Consensus       151 ~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVL----TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA  226 (402)
T ss_dssp             ETTSCEEEEETTTTEEEE----EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred             cCCCEEEEEECCCCCccE----EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence            9996 9999976432211    111 34677899999999999999999999999999865443211             


Q ss_pred             -----ceeEEEE---ecCCeEEEEeCCCCCceeeE-EEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCc
Q psy12788        135 -----GKFEMIY---VSPSQVLVKPLSGESKGRGV-ILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNL  200 (254)
Q Consensus       135 -----~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~  200 (254)
                           +.+..+.   ..++++.+||+.++.  ... .....+...|..++|+++++++ +++ .|+.|++||+.+++
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLE--EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCS--SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCcccc--CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence                 1122232   356789999998764  212 2222345679999999987655 455 58999999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=1.1e-22  Score=179.00  Aligned_cols=193  Identities=10%  Similarity=-0.011  Sum_probs=142.3

Q ss_pred             ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~   75 (254)
                      .+.+|...|.+++|+|+   +|++|+.|++|++|| .+++....+.  .. +|...|++++|+| ++++|++++.|+ ++
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--GM-GPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--CC-STTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--cC-CcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            35689999999999973   699999999999999 6666665443  22 6889999999999 789999999996 99


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------ece-eEE
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGK-FEM  139 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~-~~~  139 (254)
                      +||+..  ...... .....+...|++++|+|||++|++|+.||.|++||+.......               .+. +.+
T Consensus       145 iwd~~~--~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          145 LRDFSG--SVIQVF-AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             EEETTS--CEEEEE-ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred             EEECCC--CceEEE-eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence            999763  211110 1111234679999999999999999999999999973211110               122 345


Q ss_pred             EEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEec-CcEE-EEEECCCcEEEEeccCCce
Q psy12788        140 IYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMG-NDRY-LVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~-~~~~-~v~~~d~~i~i~dl~~~~~  201 (254)
                      +...++.+++||+.+.... ..+... .+...|.+++|+| ++.+ ++++.|++++|||+.+++.
T Consensus       222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            5566789999999873210 222222 4567899999999 7754 5677899999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.92  E-value=5.4e-23  Score=176.03  Aligned_cols=189  Identities=11%  Similarity=0.154  Sum_probs=138.9

Q ss_pred             ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d   72 (254)
                      .|.+|..+|.+++|++    ++|+|||.|++|++|| .+++  .+..+    . +|...|.+++|+|+  |++||+|+.|
T Consensus        48 ~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~----~-~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe----e-cCCCceeEEEeCcCCCCcEEEEEECC
Confidence            3678999999999974    4799999999999999 5553  33333    2 68889999999998  8999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecC-------------CCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-------------GSRIACGGLCGSVELFESVLKR----TIW-  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-------------G~~la~g~~dg~v~iwd~~~~~----~~~-  133 (254)
                      + +++||+..... ...  .....|...|++++|+|+             +++||+|+.||.|++||+..++    ... 
T Consensus       123 ~~v~~wd~~~~~~-~~~--~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~  199 (297)
T 2pm7_B          123 GKVSVVEFKENGT-TSP--IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (297)
T ss_dssp             SEEEEEEBCSSSC-BCC--EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEecCCCc-eee--eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence            6 99999864321 111  223356778999999997             5799999999999999986432    110 


Q ss_pred             ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788        134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLL  192 (254)
Q Consensus       134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~  192 (254)
                                     .   +.+.++...++.+++|++.++.......+.  ..+...|.+++|+|++++ ++++.|++++
T Consensus       200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~  279 (297)
T 2pm7_B          200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (297)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred             ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence                           0   134455566788999998764210111121  234567999999998865 5578899999


Q ss_pred             EEeccC
Q psy12788        193 LGDLHR  198 (254)
Q Consensus       193 i~dl~~  198 (254)
                      ||+...
T Consensus       280 lw~~~~  285 (297)
T 2pm7_B          280 LWKENL  285 (297)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            999763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.92  E-value=1.7e-22  Score=172.13  Aligned_cols=186  Identities=14%  Similarity=0.230  Sum_probs=133.0

Q ss_pred             CEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788         10 PYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE   87 (254)
Q Consensus        10 v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~   87 (254)
                      ...|+|+++.++++|.|++|+||| .+|++++.+..  . +|...|++++|+|+|++||+|+.|+ +++|++...+....
T Consensus        28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~--~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM--E-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC--C-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe--c-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            356999986666667799999999 78998887753  2 6778899999999999999999996 99999765432111


Q ss_pred             ecC------------------------------------ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee
Q psy12788         88 EQP------------------------------------NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT  131 (254)
Q Consensus        88 ~~~------------------------------------~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~  131 (254)
                      ...                                    .....|...+..+.|+|+|++|++++.||.|++||+.+++.
T Consensus       105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            000                                    01123456789999999999999999999999999876532


Q ss_pred             Ee---------ec------------eeEEEE--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE-
Q psy12788        132 IW---------KG------------KFEMIY--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR-  186 (254)
Q Consensus       132 ~~---------~~------------~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~-  186 (254)
                      ..         .+            ......  ..++.+++|+.....   .. ....+...+..+.+++++.+ ++++ 
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~-~~~~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CL-SAVDAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EE-EEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---cc-ccccceeeeeeeeecccccceEEEEE
Confidence            11         00            011111  234578999998773   22 22344567999999987754 4444 


Q ss_pred             -CCCcEEEEeccCCcee
Q psy12788        187 -TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       187 -~d~~i~i~dl~~~~~~  202 (254)
                       .|++|+|||+.+++..
T Consensus       261 ~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             TTTCCEEEEETTTCCEE
T ss_pred             cCCCEEEEEECCCCcEE
Confidence             5889999999987653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=3e-22  Score=171.51  Aligned_cols=184  Identities=11%  Similarity=0.104  Sum_probs=141.0

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +|...|.+++|+|+  .|++++.|++|++|| .+++  ....+.     .|...+++++|+|++++|++++.|+ +++||
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d  169 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence            68899999999984  799999999999999 5555  333332     6778899999999999999999985 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~  143 (254)
                      +......     .....+...|++++|+|||++|++++.||.|++||+..++....               +.+.++...
T Consensus       170 ~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          170 LHNQTLV-----RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             TTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCcee-----eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC
Confidence            7543221     11233667899999999999999999999999999875543321               123334445


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ++.+.+|++.++.   ...+ ..+...|..++|++++++ ++++.|+.+++||+.+++..
T Consensus       245 ~~~i~~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          245 SSNVEVLHVNKPD---KYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSCEEEEETTSSC---EEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCC---eEEE-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            6788999998873   3333 345678999999998764 55777999999999988754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=6.5e-22  Score=169.38  Aligned_cols=214  Identities=9%  Similarity=0.056  Sum_probs=151.5

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~   75 (254)
                      ..+|..+|.+++|+|+  +|++++ |++|++|| .+++   .+..+.  .. +|...|++++|+|++++|++++.|+ ++
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD--CL-NRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--CS-CTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--cc-CCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            3579999999999984  688887 99999999 5443   222222  22 5778999999999999999999986 99


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEE
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEM  139 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~  139 (254)
                      +||+........   .....+...|++++|+|+|++|++++.||.|++||+..++...                ++.+.+
T Consensus       123 ~~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          123 IWDLAAPTPRIK---AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEECCCC--EEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECCCCCccee---eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence            999765432111   1223456789999999999999999999999999986544322                122334


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCce----------eeEeCCC
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLL----------SEVLWPD  208 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~----------~~~~~~~  208 (254)
                      +...++.+.+||+.++.   .... -.+...+..++|+|++++ ++++.++.+++||+.+++.          ..+.|. 
T Consensus       200 ~~~~dg~i~~~d~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~-  274 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREGR---QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-  274 (337)
T ss_dssp             EEETTSEEEEEETTTTE---EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC-
T ss_pred             EEecCCcEEEEECCCCc---eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEEC-
Confidence            44567789999998873   3322 235678999999998765 5567789999999987653          345555 


Q ss_pred             CCCceeEEeeCceEEEEEeC
Q psy12788        209 SGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       209 ~~g~~~~~~~~~~~~~~~~~  228 (254)
                      ++++.......+....+|+.
T Consensus       275 ~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEecCCCcEEEEEC
Confidence            44444433344444445554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=8.4e-23  Score=195.84  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=148.0

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ++.+|+..|.+++|+|+  .|++++.|++|+||| .+|+.++.+.     +|...|++++|+|+|++||+|+.|+ +++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-----VTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-----cCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            46789999999999984  799999999999999 7888887775     7888999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee-eeEe-----------------eceeEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK-RTIW-----------------KGKFEM  139 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~-~~~~-----------------~~~~~~  139 (254)
                      |+.......     ....|...|++++|+|||++|++|+.||.|++||...+ ....                 ++...+
T Consensus        83 ~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           83 NYNTGEKVV-----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (814)
T ss_dssp             ETTTCCEEE-----EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             ECCCCcEEE-----EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence            976544321     12346778999999999999999999999999997654 1110                 122333


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec--CcE-EEEEECCCcEEEEeccCCc
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG--NDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~--~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      +...++.+.+||+.++.  ....+...+...+..++++|  ++. +++++.++++++||+.+++
T Consensus       158 ~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          158 SGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             EEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            44557789999998775  44555555557899999998  665 4556778899999998765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-22  Score=176.09  Aligned_cols=188  Identities=12%  Similarity=0.106  Sum_probs=143.3

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      +|...|.+++|+|+  +|++++.|++|++||.+++.+..+.     +|...|++++|+|++++|++++.|+ +++||+..
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLN-----FHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS  180 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeecc-----CCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence            47889999999984  7999999999999998888886664     7888999999999999999999985 99999754


Q ss_pred             CCcceeecC--------------------------------------------------c-eecCCCCcEeEEEEecCCC
Q psy12788         82 SKSVWEEQP--------------------------------------------------N-KTIPNLYTISALSWKRDGS  110 (254)
Q Consensus        82 ~~~~~~~~~--------------------------------------------------~-~~~~~~~~i~~l~~spdG~  110 (254)
                      .........                                                  . ....+...|++++|+|+|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK  260 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence            322111000                                                  0 1113456899999999999


Q ss_pred             eEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEE
Q psy12788        111 RIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVA  175 (254)
Q Consensus       111 ~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~  175 (254)
                      +|++++.||.|++||+..++....               ..+.++...++.+.+||+.++   ..+.....+...|..++
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~  337 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGR  337 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEE
Confidence            999999999999999865432210               013344556788999999887   44444445567899999


Q ss_pred             EecCcEE-EEEECCCcEEEEeccCCc
Q psy12788        176 IMGNDRY-LVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       176 ~~~~~~~-~v~~~d~~i~i~dl~~~~  200 (254)
                      |+|++++ ++++.|+.++|||+.+++
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9998765 557779999999999876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=3.6e-24  Score=187.65  Aligned_cols=189  Identities=12%  Similarity=0.136  Sum_probs=132.4

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCC--CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG--RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g--~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      |..+|.+++|+|+  +|++|+.|++|++|| .++  +++.    .+. +|...|++++|+|+|++||+|+.|+ +++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~----~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR----TFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC----CBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE----EEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            5678999999984  799999999999999 555  4443    334 7899999999999999999999995 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--------------eceeEE
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--------------KGKFEM  139 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--------------~~~~~~  139 (254)
                      .... .+... .....|...|++++|+|||++|++|+.||.|++||+..++.      ..              ++.+.+
T Consensus        85 ~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           85 RPDG-TWKQT-LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             -----CCCCE-EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CCCC-ceeee-eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            6533 11110 22235677999999999999999999999999999875531      11              112334


Q ss_pred             EEecCCeEEEEeCCCCCce-------------eeEEEEe-cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        140 IYVSPSQVLVKPLSGESKG-------------RGVILKS-QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~-------------~~~~l~s-~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      +...++.+++||+..+...             ....+.. .+...|.+++|+|+++ +++++.|++|+|||+.+++.
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            4455678999998532100             0111221 4456799999999886 55677899999999998864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=1.6e-22  Score=177.96  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=141.9

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCC------EEEEeeecCCCCCCCCEEEEEECCC----C---CEEE
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGR------VHRIFDYTAPHYKEREFTVACSSPS----G---QAVV   67 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~------~~~~~~~~~~~~~~~~v~~~a~sPd----g---~~la   67 (254)
                      .+.+|..+|.+++|+|++|++|+.|++|++|| .+++      ++..+.     +|...|++++|+|+    |   ++|+
T Consensus        11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-----VHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-----CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-----cCCCcEEEEEEecccccCCccccEEE
Confidence            36689999999999999999999999999999 5666      565554     78889999999999    9   9999


Q ss_pred             EEeCCc-EEEEEecCCCcceeecCceecCC-----CCcEeEEEEe----cCCCe-EEEeecCCcEEEEeeee------ee
Q psy12788         68 VGSYDN-IKLFAWSPSKSVWEEQPNKTIPN-----LYTISALSWK----RDGSR-IACGGLCGSVELFESVL------KR  130 (254)
Q Consensus        68 ~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~-----~~~i~~l~~s----pdG~~-la~g~~dg~v~iwd~~~------~~  130 (254)
                      +++.|+ +++|++................+     ...|++++|+    |+|++ |++|+.||.|++||+..      ++
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999996 99999875442000000111223     3789999999    99999 99999999999999876      32


Q ss_pred             eEe----------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEec---C---CCceeEEEE
Q psy12788        131 TIW----------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ---Y---GYEITDVAI  176 (254)
Q Consensus       131 ~~~----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~---~~~i~~i~~  176 (254)
                      ...                            .+ +.++...++.+.+||+.++   ..+.....   +   ...|.+++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEE
Confidence            211                            01 2333345678999999887   33333333   4   678999999


Q ss_pred             ecCcEE-EEEECC---CcEEEEeccCCcee
Q psy12788        177 MGNDRY-LVARTP---DTLLLGDLHRNLLS  202 (254)
Q Consensus       177 ~~~~~~-~v~~~d---~~i~i~dl~~~~~~  202 (254)
                      ++++.+ ++++.|   +.+++||+.+++..
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~  271 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERI  271 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence            998765 456667   89999999887643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=4e-23  Score=178.55  Aligned_cols=192  Identities=12%  Similarity=0.114  Sum_probs=137.1

Q ss_pred             ccCCCCCEEEEecC-----CeEEEEeCCCcEEEEe-CCCC-EEEEeeecCCCCCCCCEEEE------EECCCCCEEEEEe
Q psy12788          4 VQHPVPPYALSWPA-----GYILAAGSDRIVTIYE-SDGR-VHRIFDYTAPHYKEREFTVA------CSSPSGQAVVVGS   70 (254)
Q Consensus         4 ~~h~~~v~~l~w~~-----~~l~s~s~D~~i~vWd-~~g~-~~~~~~~~~~~~~~~~v~~~------a~sPdg~~la~gs   70 (254)
                      .+|..+|.+++|+|     +.|++|+.|++|++|| .+++ ++..+.     +|...|+++      +|+|++++|++|+
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~s~~~~~l~~~~  136 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-----GHKEIINAIDGIGGLGIGEGAPEIVTGS  136 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-----CCSSCEEEEEEESGGGCC-CCCEEEEEE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-----ecccceEEEeeccccccCCCccEEEEEe
Confidence            36889999999987     4699999999999999 6665 665553     788999999      4588999999999


Q ss_pred             CCc-EEEEEecCCCcceeecCceecCCCCcEeEEE----EecCCCeEEEeecCCcEEEEeeeeeeeEe------------
Q psy12788         71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS----WKRDGSRIACGGLCGSVELFESVLKRTIW------------  133 (254)
Q Consensus        71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~----~spdG~~la~g~~dg~v~iwd~~~~~~~~------------  133 (254)
                      .|+ +++||+..............-.....|.+++    |+|+|++|++|+.||.|++||+..++...            
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~  216 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLE  216 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEE
Confidence            996 9999976543211110000111134788998    78999999999999999999986554321            


Q ss_pred             ------eceeEEEEecCCeEEEEeCCCCCceeeEE--EEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788        134 ------KGKFEMIYVSPSQVLVKPLSGESKGRGVI--LKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~  200 (254)
                            .+.+.++...++.+.+||+.++.....+.  ....+...|.+++|+|+++  +++++.|+.++|||+.++.
T Consensus       217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence                  12334444556788899987653111111  1124567899999999876  4567889999999998754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=1.9e-23  Score=186.12  Aligned_cols=188  Identities=17%  Similarity=0.148  Sum_probs=136.1

Q ss_pred             ccccCCCCCEEEEecC----------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPA----------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVG   69 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~----------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~g   69 (254)
                      .+.+|...|.+|+|+|          ++|||||.|++||||| .++.++..+.     +|..++.+++|+|++. +|++|
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~  205 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-----PLSSPGISVQFRPSNPNQLIVG  205 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-----ECSSCEEEEEEETTEEEEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-----CCCCCcEEEEECCCCCceEEec
Confidence            3678999999999975          3799999999999999 6666665443     5778999999999875 79999


Q ss_pred             eCCc-EEEEEecCCCcceeecC--------------------ceecCCCCcEeEEEEe-cCCCeEEEeecCCcEEEEeee
Q psy12788         70 SYDN-IKLFAWSPSKSVWEEQP--------------------NKTIPNLYTISALSWK-RDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        70 s~d~-i~l~d~~~~~~~~~~~~--------------------~~~~~~~~~i~~l~~s-pdG~~la~g~~dg~v~iwd~~  127 (254)
                      +.|+ +++||+...........                    .....+...|.++.|+ |||++|++++.|+.+++||+.
T Consensus       206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence            9996 99999865443211100                    0011244578899997 899999999999999999986


Q ss_pred             eeeeEe------------------------------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCce
Q psy12788        128 LKRTIW------------------------------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEI  171 (254)
Q Consensus       128 ~~~~~~------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i  171 (254)
                      .++...                                    .+.|.++...++.+++||+.++.  ....+ ..++.+|
T Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~--~~~~~-~~~~~~V  362 (393)
T 4gq1_A          286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD--SNSIP-IQLGMPI  362 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--CCEEE-EECSSCE
T ss_pred             cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--EEEEe-cCCCCcE
Confidence            543211                                    01123334457899999999884  33333 3455689


Q ss_pred             eEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        172 TDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       172 ~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      .+++|+|++++++..+++.+++|.|.
T Consensus       363 ~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          363 VDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             EEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            99999999999888888889988764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=2e-22  Score=179.96  Aligned_cols=217  Identities=15%  Similarity=0.155  Sum_probs=150.5

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC-----------EEEEeeecCCCCCC------------CCEEEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR-----------VHRIFDYTAPHYKE------------REFTVAC   58 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~-----------~~~~~~~~~~~~~~------------~~v~~~a   58 (254)
                      .|...|.+++|+|  ++||+|+.|++|+||| .+++           +...+.     +|.            ..|++++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----SHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----CCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----cccccccccccccccCceEEEE
Confidence            4578999999998  4899999999999999 5555           354554     676            7899999


Q ss_pred             ECCCC--CEEEEEeCCc-EEEEEecCCCccee-----------------------------------ecCceecCCCCcE
Q psy12788         59 SSPSG--QAVVVGSYDN-IKLFAWSPSKSVWE-----------------------------------EQPNKTIPNLYTI  100 (254)
Q Consensus        59 ~sPdg--~~la~gs~d~-i~l~d~~~~~~~~~-----------------------------------~~~~~~~~~~~~i  100 (254)
                      |+|++  .+|++++.|+ +++|++........                                   ........|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  7999999996 99999754221000                                   0000013467789


Q ss_pred             eEEEEecCCCeEEEeecCCcEEEEeeee-eeeEe-----------------------ec-eeEEEEecCCeEEEEeCCCC
Q psy12788        101 SALSWKRDGSRIACGGLCGSVELFESVL-KRTIW-----------------------KG-KFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus       101 ~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~-----------------------~~-~~~~~~~~~~~~~v~~~~~~  155 (254)
                      ++++|+|||++|++| .||.|++||+.. ++...                       .+ .+.++...++.+++||+.++
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            999999999999999 799999999873 22211                       11 33445556778999999887


Q ss_pred             Cc-ee-eEEEEecCC-----------CceeEEEEecCcEEEEEECCCcEEEEeccC-Ccee-------------------
Q psy12788        156 SK-GR-GVILKSQYG-----------YEITDVAIMGNDRYLVARTPDTLLLGDLHR-NLLS-------------------  202 (254)
Q Consensus       156 ~~-~~-~~~l~s~~~-----------~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~-~~~~-------------------  202 (254)
                      .. .. ...+..+.+           ..|.+++|+|++++++++++++++|||+.+ ++..                   
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccc
Confidence            41 00 223322221           289999999988877665559999999986 5421                   


Q ss_pred             -------eEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788        203 -------EVLWPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       203 -------~~~~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                             .+.|+ ++++.......+....+|+.
T Consensus       340 ~~i~~~~~~~~s-~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          340 DCIFDKFECCWN-GSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             SGGGCCCCEEEC-TTSSEEEEECSTTEEEEEET
T ss_pred             cccccceEEEEC-CCCCEEEEeccCCEEEEEEc
Confidence                   15676 66655555555566666766

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.3e-23  Score=182.48  Aligned_cols=191  Identities=16%  Similarity=0.154  Sum_probs=136.3

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I   74 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i   74 (254)
                      .+.+|...|.+++|+|  ++|++++.|++|++|| .+++   +...+    . +|...|++++|+|+|++|++|+.|+ +
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~~~~~d~~i  124 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL----L-RLNRAATFVRWSPNEDKFAVGSGARVI  124 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC----C-CCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----c-ccCCceEEEEECCCCCEEEEEecCCeE
Confidence            4678999999999998  4799999999999999 5555   34332    3 7889999999999999999999996 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee------------------eeeeEe---
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV------------------LKRTIW---  133 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~------------------~~~~~~---  133 (254)
                      ++||+..... +........+|...|++++|+|||++|++|+.||.|++||+.                  .++...   
T Consensus       125 ~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T 3dwl_C          125 SVCYFEQEND-WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP  203 (377)
T ss_dssp             EECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC
T ss_pred             EEEEECCccc-ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhccc
Confidence            9999765432 111001112267899999999999999999999999999984                  222211   


Q ss_pred             ------------eceeEEEEecCCeEEEEeCCCCCceee-EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        134 ------------KGKFEMIYVSPSQVLVKPLSGESKGRG-VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                                  ++.+.++...++.+++||+.++..... +.....+...|.+++|++++++++++.++.+.+|+...
T Consensus       204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred             CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence                        123445556678899999988741000 12223455689999999999999888888888887763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=7e-23  Score=180.20  Aligned_cols=185  Identities=10%  Similarity=-0.001  Sum_probs=140.2

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~   80 (254)
                      +|...|.+++|+|  +.|++|+.|++|++||.+++++..+.     +|...|.+++|+|+++ +|++|+.|+ +++||+.
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK-----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE-----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec-----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            3557899999997  47999999999999998788887765     7889999999999999 999999996 9999986


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee----------------------cee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK----------------------GKF  137 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~----------------------~~~  137 (254)
                      ........  .....+...|++++|+| ||++|++++.||.|++||+.+++....                      +..
T Consensus       236 ~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  313 (383)
T 3ei3_B          236 NIKDKNSY--IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL  313 (383)
T ss_dssp             GCCSTTCE--EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred             CCCcccce--EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence            53221111  22345778999999999 999999999999999999865432110                      111


Q ss_pred             E-EEEe--------cCCeEEEEeCCCCCceeeEEEEec-CCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        138 E-MIYV--------SPSQVLVKPLSGESKGRGVILKSQ-YGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       138 ~-~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~-~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                      . +.+.        .++.+.+||+.++.  ....+... +...+..++|+++++++++++|++|+|||+++
T Consensus       314 ~~~~~s~dg~~s~s~d~~i~iwd~~~~~--~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          314 IVAGRYPDDQLLLNDKRTIDIYDANSGG--LVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             EEEECBCCTTTCTTCCCCEEEEETTTCC--EEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             eEEEecCCcccccCCCCeEEEEecCCCc--eeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            1 2222        46789999999884  32333222 34567778999998887766799999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=7.1e-23  Score=176.92  Aligned_cols=187  Identities=17%  Similarity=0.251  Sum_probs=138.6

Q ss_pred             cccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~   73 (254)
                      +.+|..+|.+++|++    +.|+|||.|++|++|| .+++  +...+    . +|...|++++|+|+  |.+||+|+.|+
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~----~-~h~~~V~~v~~~p~~~g~~lasgs~D~  127 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH----A-GHDSSVNSVCWAPHDYGLILACGSSDG  127 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE----C-CCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc----c-CCCCceEEEEECCCCCCcEEEEEcCCC
Confidence            568999999999974    5799999999999999 5653  44333    2 78899999999998  88999999996


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecC-----------------CCeEEEeecCCcEEEEeeeee---eeE
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-----------------GSRIACGGLCGSVELFESVLK---RTI  132 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----------------G~~la~g~~dg~v~iwd~~~~---~~~  132 (254)
                       +++||+.... .|... .....|...|.+++|+|+                 +++||+|+.|+.|++||....   +..
T Consensus       128 ~i~lwd~~~~~-~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  205 (316)
T 3bg1_A          128 AISLLTYTGEG-QWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE  205 (316)
T ss_dssp             CEEEEEECSSS-CEEEC-CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE
T ss_pred             CEEEEecCCCC-Cccee-eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee
Confidence             9999986432 23211 122345678999999998                 579999999999999998532   111


Q ss_pred             e----------------ec----eeEEEEecCCeEEEEeCCCCCc--eeeEEEEecCCCceeEEEEecCcEE-EEEECCC
Q psy12788        133 W----------------KG----KFEMIYVSPSQVLVKPLSGESK--GRGVILKSQYGYEITDVAIMGNDRY-LVARTPD  189 (254)
Q Consensus       133 ~----------------~~----~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~  189 (254)
                      .                .+    .+.++...++.+++|++.+...  .....+ ..+...|.+++|+|++++ ++++.|+
T Consensus       206 ~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          206 QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            0                01    2345566788999999876310  011223 234678999999998864 5688899


Q ss_pred             cEEEEecc
Q psy12788        190 TLLLGDLH  197 (254)
Q Consensus       190 ~i~i~dl~  197 (254)
                      +++||++.
T Consensus       285 ~v~lw~~~  292 (316)
T 3bg1_A          285 KVTLWKES  292 (316)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.3e-23  Score=189.06  Aligned_cols=186  Identities=11%  Similarity=0.073  Sum_probs=135.5

Q ss_pred             CCCCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEEEEecCC
Q psy12788          7 PVPPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l~d~~~~   82 (254)
                      ...+.+++|++  .+|++|+.|++|++||.+++++..+    . +|...|++++|+|+++ +|++|+.|+ +++||+...
T Consensus       209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~----~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL----R-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS----B-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             CccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE----e-cccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence            45678899987  4799999999999999777776443    3 7899999999999986 788999996 999997653


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------------ceeEEE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------------GKFEMI  140 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------------~~~~~~  140 (254)
                      ......  .....|...|++++|+|||++|++|+.||.|++||+..+.....                      +.+...
T Consensus       284 ~~~~~~--~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
T 4e54_B          284 RGKASF--LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV  361 (435)
T ss_dssp             CSSSCC--SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred             cccceE--EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence            322111  22345678999999999999999999999999999865432110                      011111


Q ss_pred             E-ec-----------CCeEEEEeCCCCCceeeEEEEecCCCceeEE-EEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        141 Y-VS-----------PSQVLVKPLSGESKGRGVILKSQYGYEITDV-AIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       141 ~-~~-----------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i-~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      . ..           +..+.+||..++.  ....+...+...|.++ +|+|++.++++++|++|+|||+++++.
T Consensus       362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          362 GRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART  433 (435)
T ss_dssp             ECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred             EEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence            1 11           1358899998884  3333334455678887 699999998888899999999998864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.3e-21  Score=164.51  Aligned_cols=187  Identities=9%  Similarity=0.081  Sum_probs=138.9

Q ss_pred             ccccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+.+|...|.+++|.. ++|++|+.|++|++|| .+++....+.     .|...|++++|+|++++|++|+.|+ +++|+
T Consensus        13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-----TGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-----ECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-----cCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            4678999999999932 5899999999999999 6776665554     5778999999999999999999996 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------eceeEEEEec
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------KGKFEMIYVS  143 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------~~~~~~~~~~  143 (254)
                      +...... .. ......|...|++++|  ++++|++++.||.|++||........               .+.+.++...
T Consensus        88 ~~~~~~~-~~-~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           88 LFATSGE-DP-LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TTCCTTS-CC--CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eeecCCC-Cc-ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            7543211 11 0222346678999999  78899999999999999932111111               1223445556


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ++.+.+||...    ....+...+...|..+++++++.+++++.++.+++||+.+++.
T Consensus       164 d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          164 DKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             TSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh
Confidence            77889998432    2233333366789999999988888899999999999987753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=2.5e-21  Score=174.47  Aligned_cols=187  Identities=12%  Similarity=0.152  Sum_probs=132.2

Q ss_pred             cccCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC--CCCCEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS--PSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s--Pdg~~la~gs~d~-i~l~   77 (254)
                      +.+|...|.+++|+++ .|++|+.|++|++|| .+++++..+.     +|...|++++|+  |++++|++|+.|+ +++|
T Consensus       158 ~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             ECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-----CCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            5689999999999975 899999999999999 7888886664     788999999998  6889999999996 9999


Q ss_pred             EecCCCcceeec------------------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----
Q psy12788         78 AWSPSKSVWEEQ------------------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----  134 (254)
Q Consensus        78 d~~~~~~~~~~~------------------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----  134 (254)
                      |+..........                  ......|...|.++  +|+|++|++|+.||.|++||+..++....     
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            986543221100                  00112233455544  67888888888888888888755443221     


Q ss_pred             -----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        135 -----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       135 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                                 +.+.++...++.+++||+.++   ..+.....+...|..+.+++ ..+++++.|+++++||+.+++
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCc
Confidence                       123344455677888888777   33333334556788888874 566777788888888887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=1.2e-21  Score=187.73  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=148.7

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+.+|..+|.+++|+|  +.|++++.|++|++|| .+|+++..+.     +|...|++++|+|+|++|++|+.|+ +++|
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  124 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLW  124 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence            3567999999999998  4799999999999999 7888887775     7888999999999999999999996 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEe-------------------ecee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIW-------------------KGKF  137 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~-------------------~~~~  137 (254)
                      ++.......    .....|...|++++|+| ||++|++++.||.|++||...++...                   ++.+
T Consensus       125 ~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          125 NWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             EGGGTSEEE----EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             ECCCCceEE----EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence            986432211    12234667899999999 89999999999999999975332110                   2334


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .++...++.+.+||+.++   ........+...|..++|+|++. +++++.|+++++||+.+++.
T Consensus       201 l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          201 MITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             EEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred             EEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            455556788999999887   33333344567899999999875 55677799999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=1.5e-21  Score=168.19  Aligned_cols=183  Identities=13%  Similarity=0.074  Sum_probs=139.2

Q ss_pred             ccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EE
Q psy12788          4 VQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IK   75 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~   75 (254)
                      .+|...|.+++|+|  ++|++++.|++|++|| .+++   ....+.     +|...|++++|+|+++ +|++|+.|+ ++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-----ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            47999999999997  4799999999999999 5555   232222     5778999999999999 999999996 99


Q ss_pred             EEEe-cCCCcceeecCceecC--CCCcEeEEEEecCCCeEEEeecCCcEEEEeeee---------eeeEee---------
Q psy12788         76 LFAW-SPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGLCGSVELFESVL---------KRTIWK---------  134 (254)
Q Consensus        76 l~d~-~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~---------~~~~~~---------  134 (254)
                      +|++ .....      .....  |...|++++|+| +++|++++.||.|++||+..         ++....         
T Consensus        83 ~wd~~~~~~~------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  155 (342)
T 1yfq_A           83 KVDLIGSPSF------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             EECSSSSSSE------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             EEEeccCCce------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEE
Confidence            9997 54322      11233  677999999999 99999999999999999876         443211         


Q ss_pred             ----ceeEEEEecCCeEEEEeCCC-CCceeeEEEEecCCCceeEEEEec-CcE-EEEEECCCcEEEEeccCC
Q psy12788        135 ----GKFEMIYVSPSQVLVKPLSG-ESKGRGVILKSQYGYEITDVAIMG-NDR-YLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       135 ----~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~~~i~~i~~~~-~~~-~~v~~~d~~i~i~dl~~~  199 (254)
                          ....++...++.+.+||+.+ +.. ........+...|.+++|+| ++. +++++.++.++|||+..+
T Consensus       156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          156 MDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEECSSEEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EEecCCcEEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence                11133445677999999988 431 12333345567899999998 775 566788999999999776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=1.1e-22  Score=181.14  Aligned_cols=106  Identities=8%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEe-eecCCCCCCCCEEEEEECC--------CCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIF-DYTAPHYKEREFTVACSSP--------SGQAVVVGSYDN-IKLFAWSPSKSVWE   87 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~-~~~~~~~~~~~v~~~a~sP--------dg~~la~gs~d~-i~l~d~~~~~~~~~   87 (254)
                      .|++|+.|++||+|| ..+++.... ...+. +|.+.|++++|+|        ||++||+|+.|+ +||||+......  
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~--  179 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI--  179 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE--
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee--
Confidence            599999999999999 566543321 12345 8999999999998        899999999996 999998653322  


Q ss_pred             ecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeee
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~  130 (254)
                         .....+...|.+++|+|++. +|++|+.||+|++||+.+++
T Consensus       180 ---~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          180 ---LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             ---EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             ---eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence               22345778899999999985 89999999999999986543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.4e-22  Score=177.67  Aligned_cols=189  Identities=11%  Similarity=0.174  Sum_probs=139.5

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC---C-CEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeCCc-E
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD---G-RVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSYDN-I   74 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~---g-~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~d~-i   74 (254)
                      ..|...|.+++|+|+  +|++|+.|++|++|| ..   + +++..+.     +|...|++++|+|+ +++|++|+.|+ +
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~v  138 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-----NHSSSVKTVKFNAKQDNVLASGGNNGEI  138 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-----CCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence            468899999999884  799999999999999 44   2 4664443     78899999999998 89999999996 9


Q ss_pred             EEEEecCCC------cceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788         75 KLFAWSPSK------SVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK-------------  134 (254)
Q Consensus        75 ~l~d~~~~~------~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~-------------  134 (254)
                      ++||+....      .....  .....+...|++++|+|+ +.+|++++.||.|++||+..++....             
T Consensus       139 ~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          139 FIWDMNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             EBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred             EEEECCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc
Confidence            999976543      11110  112345678999999999 78999999999999999865433211             


Q ss_pred             ---------c-eeEEEEecCC---eEEEEeCCCCCceeeEEEEe-cCCCceeEEEEec-CcE-EEEEECCCcEEEEeccC
Q psy12788        135 ---------G-KFEMIYVSPS---QVLVKPLSGESKGRGVILKS-QYGYEITDVAIMG-NDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       135 ---------~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~-~~~-~~v~~~d~~i~i~dl~~  198 (254)
                               + .+.++...++   .+++||+.++.  ....... .+...|.+++|+| ++. +++++.|++++|||+.+
T Consensus       217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence                     0 1233334455   88999998753  1122222 3556899999998 554 56678899999999998


Q ss_pred             Cce
Q psy12788        199 NLL  201 (254)
Q Consensus       199 ~~~  201 (254)
                      ++.
T Consensus       295 ~~~  297 (416)
T 2pm9_A          295 AEQ  297 (416)
T ss_dssp             CCE
T ss_pred             Ccc
Confidence            764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=3.3e-21  Score=171.28  Aligned_cols=182  Identities=12%  Similarity=0.169  Sum_probs=140.1

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      .|...|.+++|+|+  +|++|+.|+.|++|| .+++.+..+.     +|...|.+++|  ++++|++|+.|+ +++||+.
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-----GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-----CCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            37889999999984  799999999999999 7788887664     78899999999  567999999996 8999976


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEEEe--
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMIYV--  142 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~~~--  142 (254)
                      ......    .....|...|.+++|+|||++|++|+.||.|++||+..++....                +...+...  
T Consensus       205 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          205 IANHQI----GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             SSSCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             cCccee----eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            333211    22345678999999999999999999999999999876543321                11122222  


Q ss_pred             -cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-E--CCCcEEEEeccCCce
Q psy12788        143 -SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-R--TPDTLLLGDLHRNLL  201 (254)
Q Consensus       143 -~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~--~d~~i~i~dl~~~~~  201 (254)
                       .++.+.+||+.++.  ....+  .++..|.+++|+++++++++ +  .|+.++|||+.+++.
T Consensus       281 s~d~~i~i~d~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          281 TMDKQIHFWNAATGA--RVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             TTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             CCCCEEEEEECCCCC--EEEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence             37899999999884  22222  34568999999998876654 2  589999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=7.3e-22  Score=170.61  Aligned_cols=185  Identities=8%  Similarity=0.144  Sum_probs=136.9

Q ss_pred             ccCCCCCEEEEecCC---eEEEEeC---CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC---CCEEEEEeCCc
Q psy12788          4 VQHPVPPYALSWPAG---YILAAGS---DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS---GQAVVVGSYDN   73 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~---~l~s~s~---D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd---g~~la~gs~d~   73 (254)
                      .+|...|.+++|+|+   ++++++.   |++|++|| .+++.......    +|...|++++|+|+   |++|++|+.|+
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            469999999999983   4556666   99999999 67766544322    57789999999999   79999999996


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEE------EecCCCeEEEeecCCcEEEEeeeeee-eE-------------
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALS------WKRDGSRIACGGLCGSVELFESVLKR-TI-------------  132 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~------~spdG~~la~g~~dg~v~iwd~~~~~-~~-------------  132 (254)
                       +++||+.......    .....|...|+++.      |+|||++|++|+.||.|++||+..++ ..             
T Consensus        91 ~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           91 NLHIWNLEAPEMPV----YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             CEEEECTTSCSSCS----EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             eEEEEeCCCCCccE----EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence             9999976543111    12234677899995      57899999999999999999986543 11             


Q ss_pred             -----------eeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec---CcE-EEEEECCCcEEEEecc
Q psy12788        133 -----------WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG---NDR-YLVARTPDTLLLGDLH  197 (254)
Q Consensus       133 -----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~---~~~-~~v~~~d~~i~i~dl~  197 (254)
                                 .++.+.++...++.+++||+.++   .... ...+...|.+++|+|   ++. +++++.|+.+++||+.
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM---ALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---EEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---ceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence                       11223444455789999999987   3332 234567899999998   554 5667889999999998


Q ss_pred             CCc
Q psy12788        198 RNL  200 (254)
Q Consensus       198 ~~~  200 (254)
                      +++
T Consensus       243 ~~~  245 (357)
T 3i2n_A          243 TQH  245 (357)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1e-21  Score=166.69  Aligned_cols=184  Identities=14%  Similarity=0.104  Sum_probs=145.6

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEe
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~   79 (254)
                      .+.+|...|.+++|+++.|++++.|++|++|| .++....+.     .|...+.+++|+| ++++|++++.|+ +++||.
T Consensus        99 ~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  172 (313)
T 3odt_A           99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQ-----AHNASVWDAKVVSFSENKFLTASADKTIKLWQN  172 (313)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEE-----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             chhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecc-----cCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence            35679999999999989999999999999999 666665554     6888999999998 999999999996 999992


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec------e---------eEEEEecC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG------K---------FEMIYVSP  144 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~------~---------~~~~~~~~  144 (254)
                      .  ...  .  .....+...|++++|+|+|+ +++++.||.|++||+..++....-      .         ..++...+
T Consensus       173 ~--~~~--~--~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  245 (313)
T 3odt_A          173 D--KVI--K--TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED  245 (313)
T ss_dssp             T--EEE--E--EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT
T ss_pred             C--ceE--E--EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC
Confidence            1  111  1  12223667899999999999 999999999999998755443210      0         23344557


Q ss_pred             CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      +.+++||+.++.   .......+...|..++|++++++++++.|+.+++||+.+++.
T Consensus       246 g~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          246 RTVRIWSKENGS---LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             SEEEEECTTTCC---EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred             CEEEEEECCCCc---eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence            789999999884   333334556789999999998999999999999999998875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.90  E-value=3.2e-21  Score=170.23  Aligned_cols=191  Identities=13%  Similarity=0.133  Sum_probs=124.6

Q ss_pred             cccCCCCCEEEEecCCeEEEE-----------eCCCcEEEEe-CCC-CEEEEeee---c-CCCCCCCCEEEEEECCCCCE
Q psy12788          3 VVQHPVPPYALSWPAGYILAA-----------GSDRIVTIYE-SDG-RVHRIFDY---T-APHYKEREFTVACSSPSGQA   65 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~-----------s~D~~i~vWd-~~g-~~~~~~~~---~-~~~~~~~~v~~~a~sPdg~~   65 (254)
                      |.+|...|.+++++++.+++|           +.|+++|+|+ ..+ ..+.....   . .. .++..+.+++|||||++
T Consensus        69 l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           69 LEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAST-NADDYTKLVYISREGTV  147 (365)
T ss_dssp             CCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCC-CTTCCEEEEEECTTSSC
T ss_pred             ccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecC-CcccCEEEEEEcCCCCE
Confidence            457888899999998877765           4578899998 332 22222211   1 11 34456899999999999


Q ss_pred             EEEEe--CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----c--
Q psy12788         66 VVVGS--YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----G--  135 (254)
Q Consensus        66 la~gs--~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----~--  135 (254)
                      +|+++  .|+ +||||+.....      ...+.+...|++|+|||||++|++++.+ .+.+|+...++....     .  
T Consensus       148 la~as~~~d~~i~iwd~~~~~~------~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTE------KFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEE------EEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred             EEEEECCCCCEEEEeECCCCcE------EEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence            87654  665 99999654332      2334567789999999999999999855 555666544432211     0  


Q ss_pred             -eeEEEEecCC--------------eEEEEeCCCCCceeeE-EE--EecCCCceeEEEEecCcEEE-EEECCCcEEEEec
Q psy12788        136 -KFEMIYVSPS--------------QVLVKPLSGESKGRGV-IL--KSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDL  196 (254)
Q Consensus       136 -~~~~~~~~~~--------------~~~v~~~~~~~~~~~~-~l--~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl  196 (254)
                       ...+.|++++              .+..|++....  ... ..  ...+...|++++|+|+++++ +|+.|++|+|||+
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~  298 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN--TSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL  298 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE--EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccce--ecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence             1122333333              34455655442  111 11  12344579999999998765 5778999999999


Q ss_pred             cCCceee
Q psy12788        197 HRNLLSE  203 (254)
Q Consensus       197 ~~~~~~~  203 (254)
                      .++++..
T Consensus       299 ~~~~~~~  305 (365)
T 4h5i_A          299 KDLSMSK  305 (365)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9987643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-21  Score=170.53  Aligned_cols=190  Identities=11%  Similarity=0.157  Sum_probs=142.1

Q ss_pred             ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d   72 (254)
                      .+.+|..+|.+++|++    ++|++|+.|++|++|| .+++  .+..+    . .|...|++++|+|+  +++|++++.|
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee----c-CCCcceEEEEeCCCCCCCEEEEecCC
Confidence            3568999999999973    5799999999999999 6665  44333    2 68889999999999  9999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-------------CCCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-------------DGSRIACGGLCGSVELFESVLKR----TIW-  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------dG~~la~g~~dg~v~iwd~~~~~----~~~-  133 (254)
                      + +++||+........   .....+...|++++|+|             |+++|++|+.||.|++||+..++    ... 
T Consensus       125 ~~i~v~d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  201 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  201 (379)
T ss_dssp             SEEEEEECCTTSCCCE---EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEecCCCCceee---EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence            6 99999865422111   12335677899999999             79999999999999999986432    110 


Q ss_pred             ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEEec--CCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788        134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ--YGYEITDVAIMGNDRY-LVARTPDTLL  192 (254)
Q Consensus       134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~~~i~~i~~~~~~~~-~v~~~d~~i~  192 (254)
                                     .   +.+.++...++.+++||+.++.......+...  +...|.+++|+|++++ ++++.|+.++
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence                           1   34445555677899999987631112222222  4568999999998865 5577899999


Q ss_pred             EEeccCC
Q psy12788        193 LGDLHRN  199 (254)
Q Consensus       193 i~dl~~~  199 (254)
                      |||+..+
T Consensus       282 iw~~~~~  288 (379)
T 3jrp_A          282 LWKENLE  288 (379)
T ss_dssp             EEEEEET
T ss_pred             EEeCCCC
Confidence            9999854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=2.6e-21  Score=173.76  Aligned_cols=183  Identities=10%  Similarity=0.107  Sum_probs=143.5

Q ss_pred             cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +.+|...|.+++|+++.|++|+.|++|++|| .+++++..+.     +|...|.+++|+|  .++++|+.|+ +++||+.
T Consensus       169 ~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  241 (435)
T 1p22_A          169 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA  241 (435)
T ss_dssp             ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC-----CCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred             EcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc-----CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence            5689999999999888999999999999999 7888887664     7888999999975  5899999996 9999976


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCCe
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPSQ  146 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~~  146 (254)
                      ........  .....|...|++++|  +|++|++|+.||.|++||+.+++...              .+.+.++...++.
T Consensus       242 ~~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~  317 (435)
T 1p22_A          242 SPTDITLR--RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT  317 (435)
T ss_dssp             SSSCCEEE--EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred             CCCCceee--eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCe
Confidence            54332111  123456678999999  89999999999999999986554332              2234455667889


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      +++||+.++.   .+.....+...|.++++.+ ..+++++.|++|+|||+.+++
T Consensus       318 i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          318 IRLWDIECGA---CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEETTTCC---EEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEEECCCCC---EEEEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCC
Confidence            9999999883   3333344566899999953 567788899999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.8e-22  Score=193.76  Aligned_cols=184  Identities=11%  Similarity=0.022  Sum_probs=138.4

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .+|...|.+++|+|+  +||+|+.|++|+||| ..+++...+      .|..+|++++|+| |++||+++.|+ +++||+
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence            479999999999984  799999999999999 444444222      4677899999999 88999999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------------------
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------------------  133 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------------------  133 (254)
                      ......      ..+.+...|++++|+|||++||+|+.||.|++||+..++...                          
T Consensus        87 ~~~~~~------~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           87 YSQKVL------TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             TTCSEE------EEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             CCCcEE------EEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence            654321      223355789999999999999999999999999986544310                          


Q ss_pred             --eceeEEEEecCCeEEEEeCCCCCceeeEEEEec-----------------CCCceeEEEEecCcE-EEEEECCCcEEE
Q psy12788        134 --KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ-----------------YGYEITDVAIMGNDR-YLVARTPDTLLL  193 (254)
Q Consensus       134 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----------------~~~~i~~i~~~~~~~-~~v~~~d~~i~i  193 (254)
                        +....++...++.+ +||+.++.  ....+..+                 +...|++++|+|++. +++++.|++|+|
T Consensus       161 p~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             TTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             cCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence              01123334456778 99998873  22222211                 124699999999886 566888999999


Q ss_pred             EeccCCceee
Q psy12788        194 GDLHRNLLSE  203 (254)
Q Consensus       194 ~dl~~~~~~~  203 (254)
                      ||+.++++..
T Consensus       238 Wd~~~g~~~~  247 (902)
T 2oaj_A          238 WDANSGHMIM  247 (902)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCcEEE
Confidence            9999887643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.3e-22  Score=189.88  Aligned_cols=190  Identities=13%  Similarity=0.104  Sum_probs=141.1

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCCc-
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d~-   73 (254)
                      .+.+|..+|.+++|+|  ++|++|+.|++|++|| .  +++++..+.     +|...|++++|+|+  |++|++|+.|+ 
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            3679999999999997  4799999999999999 4  334554443     78899999999998  99999999996 


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecC--CCeEEEeecCCcEEEEeeeeeee----Ee--------------
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD--GSRIACGGLCGSVELFESVLKRT----IW--------------  133 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--G~~la~g~~dg~v~iwd~~~~~~----~~--------------  133 (254)
                      +++||+....  +... .....|...|++++|+|+  |+++++|+.||.|++||+..+..    ..              
T Consensus        79 I~vwd~~~~~--~~~~-~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p  155 (753)
T 3jro_A           79 VLIWKEENGR--WSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (753)
T ss_dssp             EEEEEEETTE--EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred             EEEEECCCCc--cccc-ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence            9999986532  2110 223346779999999999  99999999999999999865411    00              


Q ss_pred             -------------eceeEEEEecCCeEEEEeCCCCCceee-EEEEecCCCceeEEEEecC---cEE-EEEECCCcEEEEe
Q psy12788        134 -------------KGKFEMIYVSPSQVLVKPLSGESKGRG-VILKSQYGYEITDVAIMGN---DRY-LVARTPDTLLLGD  195 (254)
Q Consensus       134 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~~~i~~i~~~~~---~~~-~v~~~d~~i~i~d  195 (254)
                                   ++.+.++...++.+++||+.++..... ......+...|.+++|+|+   +.+ ++++.|++++|||
T Consensus       156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                         133445556678899999987642111 1112345668999999998   654 5677899999999


Q ss_pred             ccCC
Q psy12788        196 LHRN  199 (254)
Q Consensus       196 l~~~  199 (254)
                      +.++
T Consensus       236 ~~~~  239 (753)
T 3jro_A          236 QDNE  239 (753)
T ss_dssp             ESSS
T ss_pred             CCCC
Confidence            9886

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.8e-22  Score=192.97  Aligned_cols=241  Identities=14%  Similarity=0.058  Sum_probs=160.4

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEE--EEeeec-----CCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVH--RIFDYT-----APHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~--~~~~~~-----~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      |.+|...+..++|+|+  .|+||+.|++||+|| ..|...  ..+...     .. +|...|++++|+|||++||+|+.|
T Consensus       431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~-~h~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK-AKELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC-SSSCCEEEEEEETTTTEEEEEETT
T ss_pred             ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC-CCCCceeEEEecCCCCeEEEEecC
Confidence            5677778888888884  799999999999999 555321  011100     12 577899999999999999999999


Q ss_pred             c-EEEEEecCCCcc-----------------------------------------eeecCceecCCCCcEeEEEEecCCC
Q psy12788         73 N-IKLFAWSPSKSV-----------------------------------------WEEQPNKTIPNLYTISALSWKRDGS  110 (254)
Q Consensus        73 ~-i~l~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~~i~~l~~spdG~  110 (254)
                      + ++||++...+..                                         ++.. .....|...|++|+||||| 
T Consensus       510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS-TAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE-EEECCCSCSEEEEEECBTS-
T ss_pred             cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee-EEEEcCCCcEEEEEecCCc-
Confidence            6 999998753210                                         0000 1112367899999999999 


Q ss_pred             eEEEeecCCcEEEEeeeeeeeEe--------------------e----------ceeEEEEecCCeEEEEeC---CCCCc
Q psy12788        111 RIACGGLCGSVELFESVLKRTIW--------------------K----------GKFEMIYVSPSQVLVKPL---SGESK  157 (254)
Q Consensus       111 ~la~g~~dg~v~iwd~~~~~~~~--------------------~----------~~~~~~~~~~~~~~v~~~---~~~~~  157 (254)
                      +||+|+.||+|++||+..++.+.                    .          +++.++...++.+++|++   .+|. 
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-  666 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK-  666 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC-
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc-
Confidence            99999999999999976543321                    0          122333445678999998   5553 


Q ss_pred             eeeEEEEec----CCCceeEEE-Eec---------------------CcEEEEEECCCcEEEEeccCCceeeEeCCCCCC
Q psy12788        158 GRGVILKSQ----YGYEITDVA-IMG---------------------NDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGR  211 (254)
Q Consensus       158 ~~~~~l~s~----~~~~i~~i~-~~~---------------------~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g  211 (254)
                       ....+..+    +...|.+|. |+.                     .+.++++++++.++||++.++|+....|. ..-
T Consensus       667 -~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~-~~~  744 (902)
T 2oaj_A          667 -FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFK-YPL  744 (902)
T ss_dssp             -EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECS-SCE
T ss_pred             -EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccceeeEcc-cce
Confidence             22333222    145677777 541                     13456666799999999999998777666 211


Q ss_pred             c--ee----------EEeeCceEEEEEeCCeeEEEEeecCeeeeeeecCC
Q psy12788        212 N--EK----------FYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPT  249 (254)
Q Consensus       212 ~--~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  249 (254)
                      .  ..          |.-++..+..+.+.|++.+...-.-+.|.+.+.+.
T Consensus       745 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~  794 (902)
T 2oaj_A          745 AATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF  794 (902)
T ss_dssp             EEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             eeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence            1  11          11223445555566778777777666676666544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=1.5e-21  Score=175.53  Aligned_cols=189  Identities=11%  Similarity=0.034  Sum_probs=142.1

Q ss_pred             cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CC----------CCEEEEeeecCCCCCCCCEEEEEECCCCC-EEE
Q psy12788          3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SD----------GRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVV   67 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~----------g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la   67 (254)
                      +..|...|.+++|+|+   +|++++.|++|++|| ..          ++.+..+.     +|...|++++|+|+++ +|+
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEECTTSTTEEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeCCCCCCeEE
Confidence            4679999999999984   699999999999999 43          45554443     7888999999999998 999


Q ss_pred             EEeCCc-EEEEEecCCCcc-eeec-CceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee---eeEe-------
Q psy12788         68 VGSYDN-IKLFAWSPSKSV-WEEQ-PNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK---RTIW-------  133 (254)
Q Consensus        68 ~gs~d~-i~l~d~~~~~~~-~~~~-~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~---~~~~-------  133 (254)
                      +|+.|+ +++|++...... .... ......|...|.+++|+| ++.+||+++.||.|++||++.+   +...       
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999996 999997652221 1100 112235667899999999 7889999999999999998754   1111       


Q ss_pred             ---------ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccC
Q psy12788        134 ---------KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ---------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~  198 (254)
                               .+. +.++...++.+.+||+.+..  ..+.....+...|.+++|+|+++  +++++.|++|+|||+..
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence                     011 23455667899999998743  33333344567899999999773  66788899999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.89  E-value=4.9e-22  Score=177.45  Aligned_cols=192  Identities=11%  Similarity=0.106  Sum_probs=131.9

Q ss_pred             CCCEEEEecCC----eEEEEeCCCcEEEEe-CCCCEEEE------------------------------------eeecC
Q psy12788          8 VPPYALSWPAG----YILAAGSDRIVTIYE-SDGRVHRI------------------------------------FDYTA   46 (254)
Q Consensus         8 ~~v~~l~w~~~----~l~s~s~D~~i~vWd-~~g~~~~~------------------------------------~~~~~   46 (254)
                      ..|.+++|+|+    .|++++.|++|++|| .+++....                                    .....
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            88999999874    599999999999999 44332100                                    00002


Q ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeec---CceecCCCCcEeEEEEecCC-CeEEEeecCCcE
Q psy12788         47 PHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQ---PNKTIPNLYTISALSWKRDG-SRIACGGLCGSV  121 (254)
Q Consensus        47 ~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~---~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v  121 (254)
                      . +|...|++++|+|+|++|++| .|+ +++||+..........   ......|...|++++|+|+| ++||+|+.||.|
T Consensus       174 ~-~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          174 N-AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             S-CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             c-CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            3 688999999999999999999 575 9999975322211100   00123466789999999999 999999999999


Q ss_pred             EEEeeeeeee------Ee--------------------------eceeEEEEecCCeEEEEeCCC-CCceeeEEEEecCC
Q psy12788        122 ELFESVLKRT------IW--------------------------KGKFEMIYVSPSQVLVKPLSG-ESKGRGVILKSQYG  168 (254)
Q Consensus       122 ~iwd~~~~~~------~~--------------------------~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~  168 (254)
                      ++||+..++.      ..                          ++.+.++... +.+++||+.+ +.  ....+.. +.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~--~~~~~~~-~~  327 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR--PVETYQV-HE  327 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS--CSCCEES-CG
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc--ccceeec-cc
Confidence            9999865442      01                          1123334444 7899999986 42  1122221 11


Q ss_pred             C---------------ceeEEEEecCcEEE-EEECCCcEEEEeccCCceeeEe
Q psy12788        169 Y---------------EITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       169 ~---------------~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~~~~  205 (254)
                      .               .+..++|+|+++++ +++.|+.|+|||+.+++...+.
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  380 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE  380 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee
Confidence            1               13349999988654 5677999999999999875443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.3e-20  Score=161.46  Aligned_cols=190  Identities=11%  Similarity=0.136  Sum_probs=141.7

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----c
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----N   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~   73 (254)
                      .+.+|...|.+++|+|  ++|++++.|++|++|| .+++++..+.      +...+.+++|+|+|++|++++.+     +
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFSPCGNYFLAILDNVMKNPG  142 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence            3567999999999997  4799999999999999 7888887664      45689999999999999999887     5


Q ss_pred             -EEEEEecCCCcceeec-----C-ceecCCCC--cEeEEEEecCCCeEEEeecCCcEEEEeeee-eeeEe----------
Q psy12788         74 -IKLFAWSPSKSVWEEQ-----P-NKTIPNLY--TISALSWKRDGSRIACGGLCGSVELFESVL-KRTIW----------  133 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~-----~-~~~~~~~~--~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~~~----------  133 (254)
                       +++||+..........     . .....+..  .+.+++|+|||++|++|+.||.|++||+.. ++...          
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS  222 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred             EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence             8999986543221100     0 01112223  899999999999999999999999999865 32221          


Q ss_pred             ------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECCC--------------cEE
Q psy12788        134 ------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTPD--------------TLL  192 (254)
Q Consensus       134 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d~--------------~i~  192 (254)
                            ++.+.++...++.+.+||+.++.  ....+  .....+..+.|++++++++ ++.++              .++
T Consensus       223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             EEEECCCCCEEEEecCCceEEEEECCCCc--eeeee--cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence                  12234455567889999999874  22222  2567899999999887655 55566              789


Q ss_pred             EEeccCCce
Q psy12788        193 LGDLHRNLL  201 (254)
Q Consensus       193 i~dl~~~~~  201 (254)
                      +||+.+++.
T Consensus       299 ~~d~~~~~~  307 (369)
T 3zwl_B          299 FYHKIFEEE  307 (369)
T ss_dssp             EEETTTCCE
T ss_pred             EEecCCCcc
Confidence            999987764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-20  Score=170.35  Aligned_cols=189  Identities=6%  Similarity=0.016  Sum_probs=138.7

Q ss_pred             cCCCCCEEEEecCC--eE-EEEeCCCcEEEEe-C--CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          5 QHPVPPYALSWPAG--YI-LAAGSDRIVTIYE-S--DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|...|.+++|+|+  .| ++++.|++|++|| .  ++++++.+...   .|...|++++|+|+|++|++|+.++ +++|
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            56778999999984  54 8999999999999 6  78888776421   3567899999999999999999986 8888


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecC---CCeEEEeecCCcEEEEeeeeeeeEe----------------eceeE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRD---GSRIACGGLCGSVELFESVLKRTIW----------------KGKFE  138 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---G~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~  138 (254)
                      ++.......... .....|...|++++|+||   |++|++|+.|+.|++||+..++...                ++.+.
T Consensus       177 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEE
T ss_pred             ecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEE
Confidence            864322210000 122346678999999999   9999999999999999986543221                13344


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEe------------------------cCCCceeEEEEecCcEEEE-EE-CCCcEE
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKS------------------------QYGYEITDVAIMGNDRYLV-AR-TPDTLL  192 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s------------------------~~~~~i~~i~~~~~~~~~v-~~-~d~~i~  192 (254)
                      ++...++.+++||+.++.  ....+..                        .....|..|.+++++++++ ++ .++.++
T Consensus       256 ~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEESSSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEeCCCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            555667899999999884  2222221                        1234688999999887654 55 688999


Q ss_pred             EEec--cCC
Q psy12788        193 LGDL--HRN  199 (254)
Q Consensus       193 i~dl--~~~  199 (254)
                      |||+  .++
T Consensus       334 iw~~~~~~~  342 (450)
T 2vdu_B          334 ILEMSEKQK  342 (450)
T ss_dssp             EEEECSSST
T ss_pred             EEEeccCCC
Confidence            9999  544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.8e-21  Score=171.80  Aligned_cols=187  Identities=13%  Similarity=0.127  Sum_probs=140.0

Q ss_pred             cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+|...|.+++|+++.|++++.|++|++|| . .+..+..+.     +|...|.+++|+|+|++|++|+.|+ +++||.
T Consensus       172 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  246 (401)
T 4aez_A          172 MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA  246 (401)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence            5589999999999999999999999999999 4 456665554     7889999999999999999999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEee--cCCcEEEEeeeeeeeEe---------------eceeEEEE
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGG--LCGSVELFESVLKRTIW---------------KGKFEMIY  141 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~--~dg~v~iwd~~~~~~~~---------------~~~~~~~~  141 (254)
                      .......     ....+...|.+++|+|+|.. +++|+  .||.|++||+.+++...               .+.+.++.
T Consensus       247 ~~~~~~~-----~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          247 RSSIPKF-----TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             TCSSEEE-----EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEE
T ss_pred             CCCCccE-----EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEE
Confidence            6433221     22346678999999998755 55544  79999999986554332               12233333


Q ss_pred             e--cCCeEEEEeCCCCCceeeEEE--EecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCcee
Q psy12788        142 V--SPSQVLVKPLSGESKGRGVIL--KSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       142 ~--~~~~~~v~~~~~~~~~~~~~l--~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~  202 (254)
                      .  .++.+.+|++.++.   ....  ...+...|..++|+++++++ +++.|+++++||+.+++..
T Consensus       322 ~g~~dg~i~v~~~~~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSG---LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             ECTTTCEEEEEEEETTE---EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             eecCCCcEEEEecCCcc---ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            3  47899999998863   2222  23456789999999988655 5677999999999988754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.4e-20  Score=164.35  Aligned_cols=187  Identities=12%  Similarity=0.112  Sum_probs=136.9

Q ss_pred             cCCCCCEEEEecCC---eEEEEeCCCcEEEEeC----C-CC------EEEEeeecCCCC------CCCCEEEEEECCCCC
Q psy12788          5 QHPVPPYALSWPAG---YILAAGSDRIVTIYES----D-GR------VHRIFDYTAPHY------KEREFTVACSSPSGQ   64 (254)
Q Consensus         5 ~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd~----~-g~------~~~~~~~~~~~~------~~~~v~~~a~sPdg~   64 (254)
                      .|..+|.+++|+|+   +|++|+.|++|++||.    . ++      ....+..... +      |...|++++|+|+|+
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA-LSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC-CC------CBCEEEEEECTTSS
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc-ccccccCCCCceEEEEEcCCCC
Confidence            45689999999984   8999999999999985    4 44      3444443222 2      466999999999999


Q ss_pred             EEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------
Q psy12788         65 AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------  134 (254)
Q Consensus        65 ~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------  134 (254)
                      +||+|+.|+ +++|+. . ....    .....|...|++++|+|+|++|++++.||.|++||+..++....         
T Consensus       122 ~l~~~~~dg~i~i~~~-~-~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          122 SIVTGVENGELRLWNK-T-GALL----NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEEEETTSCEEEEET-T-SCEE----EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEEEeCCCeEEEEeC-C-CCee----eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            999999996 999992 2 2111    12234667899999999999999999999999999865543321         


Q ss_pred             ---------------------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEE
Q psy12788        135 ---------------------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLL  192 (254)
Q Consensus       135 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~  192 (254)
                                           ....++...++.+.+||+.++.   .......+...|..++|+++++ +++++.|+.++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT---PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS---CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc---eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                                 0112333456688999998874   3333334567899999999875 55677799999


Q ss_pred             EEeccCCce
Q psy12788        193 LGDLHRNLL  201 (254)
Q Consensus       193 i~dl~~~~~  201 (254)
                      +||+.+++.
T Consensus       273 i~d~~~~~~  281 (425)
T 1r5m_A          273 IWHGGNGNS  281 (425)
T ss_dssp             EECSSSBSC
T ss_pred             EEECCCCcc
Confidence            999988753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=4.4e-20  Score=165.92  Aligned_cols=226  Identities=11%  Similarity=0.178  Sum_probs=162.9

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .+.+|...|.+++|+++.|++|+.|++|++|| .+++++..+.     +|...|.+++|+  ++++++|+.|+ +++||.
T Consensus       154 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-----GHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             ECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             EEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC-----CCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            35689999999999999999999999999999 7888886664     788999999995  57899999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPS  145 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~  145 (254)
                      .......     ....|...|++++|  +|+++++|+.||.|++||..+++...              ++.+.++...++
T Consensus       227 ~~~~~~~-----~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~  299 (445)
T 2ovr_B          227 ETGQCLH-----VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT  299 (445)
T ss_dssp             SSCCEEE-----EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred             CCCcEEE-----EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence            6544322     12346678999999  89999999999999999986554332              223445556688


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCC-CCCCcee--EEeeCceE
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWP-DSGRNEK--FYFDNVTV  222 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~-~~~g~~~--~~~~~~~~  222 (254)
                      .+++||+.++.   .+.....+...+..+.+++ ..+++++.|+++++||+.+++.....-. .......  ..+++..+
T Consensus       300 ~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  375 (445)
T 2ovr_B          300 SIRVWDVETGN---CIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV  375 (445)
T ss_dssp             CEEEEETTTCC---EEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE
T ss_pred             eEEEEECCCCC---EEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEE
Confidence            99999999884   3333334556788888874 5778888999999999998875433211 0011111  22344444


Q ss_pred             EEEEeCCeeEEEEeecCeeeeee
Q psy12788        223 CLVFNAGELSIIEYGNNEILTCV  245 (254)
Q Consensus       223 ~~~~~~g~~~~~~~~~~~~~~~~  245 (254)
                      ...-.+|.+.+++....+.+..+
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCceeeee
Confidence            44444466777776666655554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.6e-22  Score=185.96  Aligned_cols=188  Identities=13%  Similarity=0.091  Sum_probs=135.3

Q ss_pred             cccCCCCCEEEEecCC--------eEEEEeCCCcEEEEe-CCCCEE----EEe---eecCCCCCCCCEEEEEECCCCCEE
Q psy12788          3 VVQHPVPPYALSWPAG--------YILAAGSDRIVTIYE-SDGRVH----RIF---DYTAPHYKEREFTVACSSPSGQAV   66 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--------~l~s~s~D~~i~vWd-~~g~~~----~~~---~~~~~~~~~~~v~~~a~sPdg~~l   66 (254)
                      +.+|...|..|+|+|+        +||++|.|++|++|| ..+.+.    ..+   ...+. +|...|++++|+|++ .|
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eE
Confidence            3567889999999974        799999999999999 444311    000   01123 788899999999965 89


Q ss_pred             EEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEE--EEecCC-CeEEEeecCCcEEEEeeeeeeeE----ee----
Q psy12788         67 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISAL--SWKRDG-SRIACGGLCGSVELFESVLKRTI----WK----  134 (254)
Q Consensus        67 a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l--~~spdG-~~la~g~~dg~v~iwd~~~~~~~----~~----  134 (254)
                      |+|+.|+ +++||+.......    .....|...|++|  +|+|+| ++||+|+.||+|+|||++.++..    ..    
T Consensus       281 asgs~DgtV~lWD~~~~~~~~----~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPS----FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCS----EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEEeCCCEEEEEECCCCCCce----EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            9999996 9999975422110    1234577899999  679998 89999999999999998653211    00    


Q ss_pred             ----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCC
Q psy12788        135 ----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRN  199 (254)
Q Consensus       135 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~  199 (254)
                                +...++...++.+++||+.++.  ....+.. +...|++|+|+|++++ ++|+.|++++|||+..+
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--AVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTT--CCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccc--cceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence                      1122233345679999998874  3233433 5678999999998864 66888999999997643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.3e-22  Score=186.30  Aligned_cols=204  Identities=9%  Similarity=-0.013  Sum_probs=133.3

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC------CCEEEEEeCCc-EEEEEecCCCcc---e-e
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS------GQAVVVGSYDN-IKLFAWSPSKSV---W-E   87 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd------g~~la~gs~d~-i~l~d~~~~~~~---~-~   87 (254)
                      |++++.|++|+||| ..+++.......+. .|...|.+++|+|+      +.+||+|+.|+ ++|||+......   . .
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            44566889999999 55543211111112 45678999999997      57999999996 999998643211   0 0


Q ss_pred             e-cCc-eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee-e--Ee----------------ec-eeEEEEecCC
Q psy12788         88 E-QPN-KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR-T--IW----------------KG-KFEMIYVSPS  145 (254)
Q Consensus        88 ~-~~~-~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~-~--~~----------------~~-~~~~~~~~~~  145 (254)
                      . ... ....|...|++++|+|++ +||+|+.||+|++||+..++ .  ..                .+ .+.++.+.|+
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~  333 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG  333 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence            0 001 122456789999999975 89999999999999986431 1  00                11 2345566678


Q ss_pred             eEEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcE-EEEEECCCcEEEEeccCCc-----------eeeEeCCCCCCc
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL-----------LSEVLWPDSGRN  212 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~-----------~~~~~~~~~~g~  212 (254)
                      .+++||+.++.  ....+..+.. ..|.+++|+|+++ +++++.|++++|||+++++           +..+.|+ |+|+
T Consensus       334 tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S-p~g~  410 (524)
T 2j04_B          334 YFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS-RLHP  410 (524)
T ss_dssp             EEEEECGGGHH--HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC-SSCC
T ss_pred             eEEEEECCCCC--cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC-CCCC
Confidence            89999998763  2223333322 3588999999774 5566778899999998764           4577787 7776


Q ss_pred             eeEEeeCceEEEEEeC
Q psy12788        213 EKFYFDNVTVCLVFNA  228 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~  228 (254)
                      .......+..+.+|+.
T Consensus       411 ~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          411 MVLAGSADGSLIITNA  426 (524)
T ss_dssp             BCEEEETTTEEECCBS
T ss_pred             eEEEEECCCEEEEEec
Confidence            6665555666666664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=170.82  Aligned_cols=158  Identities=11%  Similarity=0.087  Sum_probs=117.0

Q ss_pred             CCCEEEEecCCeEEEEeCCCcEEEEeCC----------CCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-E
Q psy12788          8 VPPYALSWPAGYILAAGSDRIVTIYESD----------GRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-I   74 (254)
Q Consensus         8 ~~v~~l~w~~~~l~s~s~D~~i~vWd~~----------g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i   74 (254)
                      ..|.++.|+|. ++++|.|++|++|+.+          ++.++.+.   . +|..+|.+++|+|  ++++|++|+.|+ +
T Consensus        77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---V-DSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE---C-CCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEee---c-CCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence            34666777777 9999999999999733          33344433   1 5667899999999  999999999995 9


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  154 (254)
                      ++||+.......    .....+...|++++|+|||++||+|+.||.|++||+..++...                     
T Consensus       152 ~~wd~~~~~~~~----~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---------------------  206 (343)
T 3lrv_A          152 GFQSYEDDSQYI----VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS---------------------  206 (343)
T ss_dssp             EEEESSSSCEEE----EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC---------------------
T ss_pred             EEEECCCCcEEE----EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc---------------------
Confidence            999976543311    1122344579999999999999999999999999986443210                     


Q ss_pred             CCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                            ..+...+..+|++++|+|++.+++++++++++|||+++++.
T Consensus       207 ------~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          207 ------SRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG  247 (343)
T ss_dssp             ------EECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred             ------cEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence                  11111245689999999988877766677999999998753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.89  E-value=3.2e-20  Score=166.59  Aligned_cols=214  Identities=13%  Similarity=0.124  Sum_probs=155.1

Q ss_pred             cCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          5 QHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         5 ~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      +|...|.+++|+.+.|++|+.|++|++|| .+++++..+.     +|...|++++|  ++++|++|+.|+ +++||+...
T Consensus       131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-----GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-----CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-----CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            46678999999989999999999999999 7888886664     78899999998  789999999996 999997654


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-----------------eeceeEEEEecCC
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-----------------WKGKFEMIYVSPS  145 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~~~~~  145 (254)
                      ....     ....|...|.+++|++  .++++|+.||.|++||+..++..                 .++.+.++...++
T Consensus       204 ~~~~-----~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg  276 (435)
T 1p22_A          204 EMLN-----TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR  276 (435)
T ss_dssp             CEEE-----EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             cEEE-----EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC
Confidence            4321     1234667899999974  59999999999999998654321                 1233455666788


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCc-eeEEeeCceEEE
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRN-EKFYFDNVTVCL  224 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  224 (254)
                      .+++||+.++.   .+.....+...|.++.+.+ ..+++++.|+++++||+.++++....-. ..+. ....+++..+..
T Consensus       277 ~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s  351 (435)
T 1p22_A          277 TIKVWNTSTCE---FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNKRIVS  351 (435)
T ss_dssp             EEEEEETTTCC---EEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEECCSSEEEE
T ss_pred             eEEEEECCcCc---EEEEEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeC-CcCcEEEEEecCCEEEE
Confidence            99999999884   3333344567899999974 6788899999999999998876433211 1111 111223334444


Q ss_pred             EEeCCeeEEEEee
Q psy12788        225 VFNAGELSIIEYG  237 (254)
Q Consensus       225 ~~~~g~~~~~~~~  237 (254)
                      .-.+|.+.+++..
T Consensus       352 g~~dg~i~vwd~~  364 (435)
T 1p22_A          352 GAYDGKIKVWDLV  364 (435)
T ss_dssp             EETTSCEEEEEHH
T ss_pred             EeCCCcEEEEECC
Confidence            4444566666554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=6.5e-20  Score=164.78  Aligned_cols=226  Identities=9%  Similarity=0.076  Sum_probs=162.5

Q ss_pred             cccCCCCC-EEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPP-YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v-~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      +.+|...| .+++++++.|++|+.|++|++|| .+++++..+.     +|...|.+++|+  +++|++|+.|+ +++||+
T Consensus       114 l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-----GHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             ecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-----CCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            56888764 78888889999999999999999 7888886664     789999999997  67999999996 999997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPS  145 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~  145 (254)
                      ......     .....|...|.+++|+  +++|++|+.||.|++||...++...              ++.+.++...++
T Consensus       187 ~~~~~~-----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg  259 (445)
T 2ovr_B          187 ETGECI-----HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  259 (445)
T ss_dssp             TTTEEE-----EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             CcCcEE-----EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCC
Confidence            643322     1123466789999995  6789999999999999987654332              223345556688


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCc-eeEEeeCceEEE
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRN-EKFYFDNVTVCL  224 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  224 (254)
                      .+++||+.++   ..+.....+...|.++.+. ...+++++.|+++++||+.+++.....-. ..+. ..+.+++..+..
T Consensus       260 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~  334 (445)
T 2ovr_B          260 MVKVWDPETE---TCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDNILVS  334 (445)
T ss_dssp             CEEEEEGGGT---EEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCC---cEeEEecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEcC-CcccEEEEEEeCCEEEE
Confidence            9999999887   3333333455689999994 35677888999999999999876433211 1111 223344554445


Q ss_pred             EEeCCeeEEEEeecCeeeeeeec
Q psy12788        225 VFNAGELSIIEYGNNEILTCVRI  247 (254)
Q Consensus       225 ~~~~g~~~~~~~~~~~~~~~~~~  247 (254)
                      .-.+|.+.+++....+.+.....
T Consensus       335 ~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          335 GNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             EETTSCEEEEETTTCCEEEEECS
T ss_pred             EeCCCeEEEEECCCCcEEEEEcc
Confidence            55557777777766665555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=7.9e-21  Score=161.74  Aligned_cols=191  Identities=14%  Similarity=0.148  Sum_probs=139.1

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeee-----------------------------------
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDY-----------------------------------   44 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~-----------------------------------   44 (254)
                      +.+|...|.+++|+|  ++|++|+.|++|++|| .++++++.+..                                   
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~  142 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH  142 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee
Confidence            346888999999998  4799999999999999 77776655421                                   


Q ss_pred             --cCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeE---EEeecC
Q psy12788         45 --TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI---ACGGLC  118 (254)
Q Consensus        45 --~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l---a~g~~d  118 (254)
                        ... +|...+..++|+|+|++|++++.|+ +++||.......... ......+...|.+++|+|++..+   ++++.+
T Consensus       143 ~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          143 VATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             EEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC-SEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             EEEEc-CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc-eeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence              112 4677889999999999999999996 999997654332211 12223455689999999988754   467789


Q ss_pred             CcEEEEeeeeeeeEee---------------ceeEEEEe--cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE
Q psy12788        119 GSVELFESVLKRTIWK---------------GKFEMIYV--SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR  181 (254)
Q Consensus       119 g~v~iwd~~~~~~~~~---------------~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~  181 (254)
                      +.|++||.........               +.+.+...  .++.+++||+.++.   .+..-..|...|++++|+|+++
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS
T ss_pred             CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCC
Confidence            9999999764433211               11223333  46789999999884   3333334567899999999886


Q ss_pred             -EEEEECCCcEEEEeccC
Q psy12788        182 -YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       182 -~~v~~~d~~i~i~dl~~  198 (254)
                       +++++.|++|+|||+..
T Consensus       298 ~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          298 TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CEEEEETTTEEEEECCSC
T ss_pred             EEEEEecCCeEEEEECCC
Confidence             55688899999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=1.5e-20  Score=188.39  Aligned_cols=212  Identities=14%  Similarity=0.201  Sum_probs=160.7

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC--CCCEEEEEeCCc-EE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP--SGQAVVVGSYDN-IK   75 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP--dg~~la~gs~d~-i~   75 (254)
                      .+.+|...|.+++|+|+  +|++++.|++|++|| .+|+++..+.     +|...|++++|+|  ++.++++|+.|+ ++
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSNDFFLK  726 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc-----CCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence            35689999999999984  799999999999999 7899987776     7889999999999  556899999996 99


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------------
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------------  134 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------------  134 (254)
                      +||+......     .....|...|++++|+|||++|++|+.||.|++||+..++....                     
T Consensus       727 vwd~~~~~~~-----~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  801 (1249)
T 3sfz_A          727 LWDLNQKECR-----NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV  801 (1249)
T ss_dssp             EEETTSSSEE-----EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred             EEECCCcchh-----heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence            9997654322     12235678999999999999999999999999999865533211                     


Q ss_pred             --------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc-----
Q psy12788        135 --------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL-----  200 (254)
Q Consensus       135 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~-----  200 (254)
                              +.+ +....++.+.+|++.++.  ....+...+...|..++|+|++.++ +++.++++++||+.+++     
T Consensus       802 ~~~~~s~dg~~-l~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          802 KCCSWSADGDK-IIVAAKNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             CCCCBCTTSSE-EEEEETTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCE-EEEEcCCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence                    111 222346788999998885  4444444566789999999988655 56678899999999765     


Q ss_pred             ------eeeEeCCCCCCceeEEeeCceEEEEEe
Q psy12788        201 ------LSEVLWPDSGRNEKFYFDNVTVCLVFN  227 (254)
Q Consensus       201 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~  227 (254)
                            +..+.|+ ++|+.......+....+|+
T Consensus       879 ~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          879 RGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             CCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEE
T ss_pred             CCCccceEEEEEC-CCCCEEEEEeCCCeEEEEE
Confidence                  3456666 5555555444455555555

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.88  E-value=3.3e-20  Score=159.37  Aligned_cols=224  Identities=16%  Similarity=0.135  Sum_probs=157.6

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+|+  +|++++.|+.|++|+ ..+.......     .+...+..+.++|++++|++|+.|+ +++||
T Consensus        82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d  156 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-----GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN  156 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-----CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence            5689999999999984  799999999999999 5555444333     4567889999999999999999996 89998


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCC--CeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG--SRIACGGLCGSVELFESVLKRTIW----------------KGKFEMI  140 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~  140 (254)
                      ........    .....+...+..++|++++  .++++++.|+.|++||...++...                ++.+.++
T Consensus       157 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          157 TLGVCKYT----VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             TTSCEEEE----ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             eCCCceEE----EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence            54322111    2223456789999999885  568899999999999986554332                1234445


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEE-eeC
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFY-FDN  219 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~-~~~  219 (254)
                      ...++.+++||+.+..   .+... .....|..+.+++++.+++++.|++++|||++++.+....-. ........ -..
T Consensus       233 ~s~Dg~i~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~h~~  307 (340)
T 4aow_A          233 GGKDGQAMLWDLNEGK---HLYTL-DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ-EVISTSSKAEPP  307 (340)
T ss_dssp             EETTCEEEEEETTTTE---EEEEE-ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC-C-------CCCC
T ss_pred             EeCCCeEEEEEeccCc---eeeee-cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc-cceeeeccCCCC
Confidence            5667899999998873   32222 234689999999988999999999999999998865432211 10000111 134


Q ss_pred             ceEEEEEeC-CeeEEEEeecCe
Q psy12788        220 VTVCLVFNA-GELSIIEYGNNE  240 (254)
Q Consensus       220 ~~~~~~~~~-g~~~~~~~~~~~  240 (254)
                      .+.++.|++ |.+.+....+..
T Consensus       308 ~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          308 QCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSC
T ss_pred             CEEEEEECCCCCEEEEEeCCCE
Confidence            567788877 555555544443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.88  E-value=8.9e-22  Score=170.42  Aligned_cols=191  Identities=10%  Similarity=0.071  Sum_probs=138.8

Q ss_pred             ccCCCCCEEEEecC------CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC----CCEEEEEeCC
Q psy12788          4 VQHPVPPYALSWPA------GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS----GQAVVVGSYD   72 (254)
Q Consensus         4 ~~h~~~v~~l~w~~------~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs~d   72 (254)
                      .+|..+|.+++|+|      ..+++++.|+.|++|| .+++.++.+.......|...|++++|+|+    |++|++|+.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            37999999999996      2466666777999999 66776666542221136688999999999    6799999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee----------------
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK----------------  134 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~----------------  134 (254)
                      + +++||+.......     ....|...|++++|+| ++++|++|+.||.|++||+..++....                
T Consensus        95 g~i~v~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           95 GIIRIINPITMQCIK-----HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             CEEEEECTTTCCEEE-----EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             CEEEEEEchhceEee-----eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            6 9999976433221     1234678999999999 999999999999999999865443221                


Q ss_pred             ---ceeEEEEecCCeEEEEeCCCCCce-------------------------eeEEEEecCCCceeEEEEecCcEEEEEE
Q psy12788        135 ---GKFEMIYVSPSQVLVKPLSGESKG-------------------------RGVILKSQYGYEITDVAIMGNDRYLVAR  186 (254)
Q Consensus       135 ---~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~l~s~~~~~i~~i~~~~~~~~~v~~  186 (254)
                         +.+.++...++.+++||+.++...                         ........+...|.+++|+ .+.+++++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~  248 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKS  248 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEEC
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEe
Confidence               123344455778999998765210                         0011111256789999999 46778888


Q ss_pred             CCCcEEEEeccCCc
Q psy12788        187 TPDTLLLGDLHRNL  200 (254)
Q Consensus       187 ~d~~i~i~dl~~~~  200 (254)
                      .|+.+++||+.+++
T Consensus       249 ~d~~i~~wd~~~~~  262 (366)
T 3k26_A          249 CENAIVCWKPGKME  262 (366)
T ss_dssp             SSSEEEEEEESSTT
T ss_pred             cCCEEEEEeCCCcc
Confidence            89999999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.88  E-value=3.9e-21  Score=164.14  Aligned_cols=190  Identities=14%  Similarity=0.097  Sum_probs=124.6

Q ss_pred             cccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCC---------CEEEEeeecCCCCCCCCEEEEEECCC--CCEE
Q psy12788          3 VVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDG---------RVHRIFDYTAPHYKEREFTVACSSPS--GQAV   66 (254)
Q Consensus         3 l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g---------~~~~~~~~~~~~~~~~~v~~~a~sPd--g~~l   66 (254)
                      +.+|..+|.+++|++    ++|++|+.|++|++|| ..+         +++..+.     +|...|++++|+|+  +++|
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-----DSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-----CCSSCEEEEEECCGGGCSEE
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-----ccCCceeEEEEcCCCCCcEE
Confidence            457999999999986    4799999999999999 555         3344432     78899999999999  9999


Q ss_pred             EEEeCCc-EEEEEecCCCcce--ee------------------------------------------------c-----C
Q psy12788         67 VVGSYDN-IKLFAWSPSKSVW--EE------------------------------------------------Q-----P   90 (254)
Q Consensus        67 a~gs~d~-i~l~d~~~~~~~~--~~------------------------------------------------~-----~   90 (254)
                      ++++.|+ +++||+.......  ..                                                .     .
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            9999996 9999976433110  00                                                0     0


Q ss_pred             ceecCCCCcEeEEEEecCC----CeEEEeecCCcEEEEeeeeeeeEeece---eEE---------EEec--------CCe
Q psy12788         91 NKTIPNLYTISALSWKRDG----SRIACGGLCGSVELFESVLKRTIWKGK---FEM---------IYVS--------PSQ  146 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG----~~la~g~~dg~v~iwd~~~~~~~~~~~---~~~---------~~~~--------~~~  146 (254)
                      .....|...|++++|+|+|    ++|++|+.||.|++||+..+.......   ...         .+..        ...
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            0011245678899999998    788999999999999886543221100   000         0000        001


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      ..+++....   ..+.....+...|++++|+++++ +++++.|++|+|||+.+++
T Consensus       288 ~~~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          288 AELQSNLQV---ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ---CCSEEE---EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eeecccccc---cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            111111111   12222233456899999999886 5567889999999998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=1.4e-20  Score=165.17  Aligned_cols=190  Identities=13%  Similarity=0.105  Sum_probs=138.1

Q ss_pred             cccCCCCCEEEEecC---CeEEEEeCCCcEEEEe-CCCCEEEEeee---------cCCCCCCCCEEEEEECC-CCCEEEE
Q psy12788          3 VVQHPVPPYALSWPA---GYILAAGSDRIVTIYE-SDGRVHRIFDY---------TAPHYKEREFTVACSSP-SGQAVVV   68 (254)
Q Consensus         3 l~~h~~~v~~l~w~~---~~l~s~s~D~~i~vWd-~~g~~~~~~~~---------~~~~~~~~~v~~~a~sP-dg~~la~   68 (254)
                      +.+|..+|.+++|+|   ++|++|+.|++|++|| .+++....+..         ... +|...|++++|+| ++++|++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD-VHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT-CCSSCEEEEEECTTCTTCEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccc-cCCCcEEEEEEccCCCcEEEE
Confidence            457999999999988   4799999999999999 55543322210         012 4888999999999 7889999


Q ss_pred             EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecC---CCeEEEeecCCcEEEEeeeeeeeEe-----------
Q psy12788         69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRD---GSRIACGGLCGSVELFESVLKRTIW-----------  133 (254)
Q Consensus        69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd---G~~la~g~~dg~v~iwd~~~~~~~~-----------  133 (254)
                      ++.|+ +++||+.....      .....+...+.++.|+|.   +.++++|+.+|.|++||+..++...           
T Consensus       118 ~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQT------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             EETTSEEEEEETTTTEE------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             EeCCCeEEEeeCCCCcc------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            99886 99999754322      223345668999999995   4599999999999999986543221           


Q ss_pred             -----ece-eEEEEecCCeEEEEeCCCCCceeeEEEE---------------ecCCCceeEEEEecCcE-EEEEECCCcE
Q psy12788        134 -----KGK-FEMIYVSPSQVLVKPLSGESKGRGVILK---------------SQYGYEITDVAIMGNDR-YLVARTPDTL  191 (254)
Q Consensus       134 -----~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~---------------s~~~~~i~~i~~~~~~~-~~v~~~d~~i  191 (254)
                           .+. ..++...++.+++||+.++.  ......               ..+...|.+++|+|+++ +++++.|+.+
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence                 112 13345567789999997653  111111               23456799999999876 5567789999


Q ss_pred             EEEeccCCce
Q psy12788        192 LLGDLHRNLL  201 (254)
Q Consensus       192 ~i~dl~~~~~  201 (254)
                      ++||+.+++.
T Consensus       270 ~vwd~~~~~~  279 (408)
T 4a11_B          270 RLWNSSNGEN  279 (408)
T ss_dssp             EEEETTTCCB
T ss_pred             EEEECCCCcc
Confidence            9999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-20  Score=168.89  Aligned_cols=192  Identities=8%  Similarity=0.054  Sum_probs=138.0

Q ss_pred             cCCCCCEEEEecC--CeEEEEeCCCcEEEEeC----CCCEEEEee--------ecCCCCCCCCEEEEE--ECCCCCEEEE
Q psy12788          5 QHPVPPYALSWPA--GYILAAGSDRIVTIYES----DGRVHRIFD--------YTAPHYKEREFTVAC--SSPSGQAVVV   68 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd~----~g~~~~~~~--------~~~~~~~~~~v~~~a--~sPdg~~la~   68 (254)
                      +|..+|.+++|+|  +.|++|+.|++|++||.    +|++++.+.        .... ++...+.+++  ++|++++|++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF-GKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGG-SSCCCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCc-ccccCceEEEEEEcCCCCEEEE
Confidence            6899999999988  47999999999999983    555544332        1111 1456677777  7799999999


Q ss_pred             EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------------
Q psy12788         69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-------------  134 (254)
Q Consensus        69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-------------  134 (254)
                      |+.|+ +++||+.........   ....|...|++++|+|+|++|++|+.||.|++||+..++....             
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred             EeCCCeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence            99996 999997654432211   1112567899999999999999999999999999865543321             


Q ss_pred             --------ceeEEEEecCCeEEEEeCCCCCceeeEEEEec-------------------------CCCceeEEEEecCcE
Q psy12788        135 --------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ-------------------------YGYEITDVAIMGNDR  181 (254)
Q Consensus       135 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-------------------------~~~~i~~i~~~~~~~  181 (254)
                              +.+.++...++.+++||+.++.  ....+..+                         +...|.+++|+ +++
T Consensus       265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          265 VCQFYGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             ECTTTCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             eccccCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence                    1133344456789999998874  22333311                         33468899999 455


Q ss_pred             -EEEEECCCcEEEEeccCCceee
Q psy12788        182 -YLVARTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       182 -~~v~~~d~~i~i~dl~~~~~~~  203 (254)
                       +++++.|++|++||+.+++...
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEecCCCCeEEEEECCCcccce
Confidence             5566779999999999987543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.9e-21  Score=173.95  Aligned_cols=192  Identities=12%  Similarity=0.055  Sum_probs=134.5

Q ss_pred             ccCCCCCEEEEecC-C--eEEEEeCCCcEEEEe-CC---CCEEE-EeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-E
Q psy12788          4 VQHPVPPYALSWPA-G--YILAAGSDRIVTIYE-SD---GRVHR-IFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-I   74 (254)
Q Consensus         4 ~~h~~~v~~l~w~~-~--~l~s~s~D~~i~vWd-~~---g~~~~-~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i   74 (254)
                      .+|...|.+++|+| +  +|++|+.|++|++|| .+   +.+.+ .+.+    +|...|++++|+|++++|++|+.|+ +
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY----DCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE----ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec----cCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            67899999999998 4  799999999999999 44   43111 1111    4678999999999999999999996 9


Q ss_pred             EEEEec---CCCccee----ecCceec-C--CCCcEeEEE--EecCCCeEEEeecCCcEEEEeeeeeeeEe---------
Q psy12788         75 KLFAWS---PSKSVWE----EQPNKTI-P--NLYTISALS--WKRDGSRIACGGLCGSVELFESVLKRTIW---------  133 (254)
Q Consensus        75 ~l~d~~---~~~~~~~----~~~~~~~-~--~~~~i~~l~--~spdG~~la~g~~dg~v~iwd~~~~~~~~---------  133 (254)
                      ++||+.   .......    ......+ +  +...+.++.  ++||+++|++|+.||.|++||+..++...         
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            999984   1111100    0000001 1  445677777  67899999999999999999986554321         


Q ss_pred             ---------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEe----cCcEEE-EEECCCcEEEEeccC
Q psy12788        134 ---------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS-QYGYEITDVAIM----GNDRYL-VARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~----~~~~~~-v~~~d~~i~i~dl~~  198 (254)
                               .+.+.++...++.+++||+.++   ..+.... .+...|.+++++    +++.++ +++.|++|+|||+.+
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence                     1123444556778999999987   3332222 344589999665    456555 456688999999998


Q ss_pred             Ccee
Q psy12788        199 NLLS  202 (254)
Q Consensus       199 ~~~~  202 (254)
                      +++.
T Consensus       293 ~~~~  296 (437)
T 3gre_A          293 GHCQ  296 (437)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            8754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=1.3e-20  Score=165.34  Aligned_cols=189  Identities=11%  Similarity=0.064  Sum_probs=141.2

Q ss_pred             cCCCCCEEEEecC---C--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCCc-EEE
Q psy12788          5 QHPVPPYALSWPA---G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYDN-IKL   76 (254)
Q Consensus         5 ~h~~~v~~l~w~~---~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d~-i~l   76 (254)
                      .|...+.+++|.+   +  .|++++.|+.|++|| .+++++..+.     +|...|++++|+|+++ +|++|+.|+ +++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i  213 (408)
T 4a11_B          139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKL  213 (408)
T ss_dssp             ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence            4677889999976   2  799999999999999 7777776554     6888999999999998 588999996 999


Q ss_pred             EEecCCCcceeec-----------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------
Q psy12788         77 FAWSPSKSVWEEQ-----------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------  134 (254)
Q Consensus        77 ~d~~~~~~~~~~~-----------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------  134 (254)
                      ||...........           ......+...|++++|+|||++|++++.||.|++||+..++....           
T Consensus       214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  293 (408)
T 4a11_B          214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK  293 (408)
T ss_dssp             EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred             EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence            9976433211100           001124567899999999999999999999999999876543210           


Q ss_pred             ----------ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        135 ----------GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       135 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                                ....+....++.+.+||+.++.   .+.....+...|.+++|+|+++ +++++.|+.+++||+.+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             CCCCEECCSSSSCEEEEEETTEEEEEETTTCC---EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             cceeEEecCCCceEEEEecCCEEEEEECcCCc---ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence                      1123344567899999999884   3333344567899999999876 45677899999999998875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=1.8e-20  Score=164.80  Aligned_cols=191  Identities=11%  Similarity=0.030  Sum_probs=138.6

Q ss_pred             cccCCCCCEEEEecCC---------eEEEEeCCCcEEEEe-CCCCE-----EEEeeecCCCCC-----CCCEEEEEEC--
Q psy12788          3 VVQHPVPPYALSWPAG---------YILAAGSDRIVTIYE-SDGRV-----HRIFDYTAPHYK-----EREFTVACSS--   60 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---------~l~s~s~D~~i~vWd-~~g~~-----~~~~~~~~~~~~-----~~~v~~~a~s--   60 (254)
                      +.+|..+|.+++|+++         +|++++.|++|++|| .+++.     +..+.     .|     ...|.+++|+  
T Consensus        58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-----LLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-----CSCTTGGGSCEEEEEEECC
T ss_pred             EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-----ccccccCCCcEEEEEEeec
Confidence            5689999999999854         699999999999999 56654     55543     56     4889999999  


Q ss_pred             --CCCCE-EEEEeCCc-EEEEEecC------CCcce-eec-Ccee-----cCCCCcEeEEEEecCCCeEEEeecCCcEEE
Q psy12788         61 --PSGQA-VVVGSYDN-IKLFAWSP------SKSVW-EEQ-PNKT-----IPNLYTISALSWKRDGSRIACGGLCGSVEL  123 (254)
Q Consensus        61 --Pdg~~-la~gs~d~-i~l~d~~~------~~~~~-~~~-~~~~-----~~~~~~i~~l~~spdG~~la~g~~dg~v~i  123 (254)
                        |++++ |++|+.|+ +++||+..      ..... ... ....     ..+...|++++|+|+| +|++|+.||.|++
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence              99999 99999996 99999875      22211 100 0000     2356789999999999 9999999999999


Q ss_pred             EeeeeeeeEe-----------e-----------ceeEEEEecC---CeEEEEeCCCCCceeeEEEEec------------
Q psy12788        124 FESVLKRTIW-----------K-----------GKFEMIYVSP---SQVLVKPLSGESKGRGVILKSQ------------  166 (254)
Q Consensus       124 wd~~~~~~~~-----------~-----------~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~------------  166 (254)
                      ||+..++...           .           +.+.++...+   +.+.+||+.++.   .+.....            
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCB
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---ccceeccCccccccccccc
Confidence            9986443221           1           1123334445   789999998874   3333333            


Q ss_pred             -CCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        167 -YGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       167 -~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                       +...|.+++|++++++ ++++.|+.++|||+.+++..
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  326 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence             5678999999998765 55777999999999988753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=1.5e-20  Score=188.32  Aligned_cols=187  Identities=13%  Similarity=0.138  Sum_probs=146.6

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+++|+|+  +|++|+.|++|++|| .+++++.++.     +|...|++++|+|+|++||+|+.|+ +++||
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-----AHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            4579999999999984  799999999999999 7888887664     7889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEec--CCCeEEEeecCCcEEEEeeeeeeeEe----------------eceeEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKR--DGSRIACGGLCGSVELFESVLKRTIW----------------KGKFEMI  140 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dG~~la~g~~dg~v~iwd~~~~~~~~----------------~~~~~~~  140 (254)
                      +.......     ....|...|++++|+|  ++.++++|+.||.|++||..+++...                ++.+.++
T Consensus       686 ~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  760 (1249)
T 3sfz_A          686 SATGKLVH-----TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS  760 (1249)
T ss_dssp             TTTCCEEE-----EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             CCCCceEE-----EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence            76543321     2235677999999999  55689999999999999987654332                1234455


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEe------------cCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKS------------QYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s------------~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ...++.+++||+.++.  ....+..            .....+.+++|++++.+++++.++.+.+||+.++..
T Consensus       761 ~s~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          761 CSADGTLRLWDVRSAN--ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL  831 (1249)
T ss_dssp             EESSSEEEEEEGGGTE--EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred             EECCCeEEEEeCCCCc--ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence            5667899999998773  2222211            112368889999999888888899999999987653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6e-21  Score=166.23  Aligned_cols=161  Identities=8%  Similarity=0.088  Sum_probs=116.6

Q ss_pred             cCCCCCEEEEecC--C--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          5 QHPVPPYALSWPA--G--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         5 ~h~~~v~~l~w~~--~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +|..+|.+++|+|  +  +|++|+.|++|++|| .++++...+.   . .+...+++++|+|+|++||+|+.|+ +++||
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~-~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---A-KSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC---C-CSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---c-CCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            5668899999988  3  799999999999999 7787765442   1 4556799999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      +........   .....|..+|++++|+|||++|++++ ++.|++||++..+....                 +..-   
T Consensus       199 ~~~~~~~~~---~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~-----------------~~~~---  254 (343)
T 3lrv_A          199 LSSPDQASS---RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA-----------------YPTY---  254 (343)
T ss_dssp             SSCTTSCCE---ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS-----------------SCCC---
T ss_pred             CCCCCCCcc---EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee-----------------eccc---
Confidence            765443201   11113678999999999999999999 66999999865432211                 0000   


Q ss_pred             eeEEEEecCCCce--eEEEEecCcEEEE-EEC-CCcEEEEeccCC
Q psy12788        159 RGVILKSQYGYEI--TDVAIMGNDRYLV-ART-PDTLLLGDLHRN  199 (254)
Q Consensus       159 ~~~~l~s~~~~~i--~~i~~~~~~~~~v-~~~-d~~i~i~dl~~~  199 (254)
                            ..+...+  ..++|+|++++++ ++. ++.++||++..+
T Consensus       255 ------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          255 ------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             ------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                  0001122  4699999887765 455 899999999655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=7.4e-20  Score=163.69  Aligned_cols=184  Identities=12%  Similarity=0.139  Sum_probs=136.8

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...|.+|+|+|+  +|++|+.|++|++|| .++++++.+.     +|...+.++++  ++++|++|+.|+ +++||
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-----~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-----SHSARVGSLSW--NSYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-----CCCCceEEEee--CCCEEEEEeCCCceeEee
Confidence            3468889999999984  899999999999999 7888886664     78888988877  568999999996 88999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------ec------------ee
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------KG------------KF  137 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------~~------------~~  137 (254)
                      ........    .....|...+..+.|+|+|+++++++.||.+++||...++...         .+            ..
T Consensus       216 ~~~~~~~~----~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          216 VRVAEHHV----ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             TTSSSCEE----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred             ecccceee----EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence            65433221    1234567789999999999999999999999999986543110         00            11


Q ss_pred             EEEE--ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE--CCCcEEEEeccCCce
Q psy12788        138 EMIY--VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR--TPDTLLLGDLHRNLL  201 (254)
Q Consensus       138 ~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~--~d~~i~i~dl~~~~~  201 (254)
                      ..+.  ..|+.+++||+.++.   .... -.....+..+.+++++.. ++++  .|++|+|||+.+++.
T Consensus       292 la~~~gs~D~~I~iwd~~t~~---~~~~-~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGA---CLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTE---EEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             EEEEeecCCCEEEEEeCCccc---ccee-eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence            1222  236789999999883   2222 233567899999987754 4444  588999999987754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=1.8e-20  Score=167.66  Aligned_cols=190  Identities=13%  Similarity=0.116  Sum_probs=142.4

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+.+|...+.+++|++..|++|+.|+++++|| .. ...+..+.     +|...+..+.|+|+|+++++++.|+ +++|+
T Consensus       184 ~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-----~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec-----ccccceeeeeecCCCCeeeeeeccccceEEe
Confidence            35689999999999999999999999999999 33 35555554     7889999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEE--eecCCcEEEEeeeeeeeEee---------------ceeEEE
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IAC--GGLCGSVELFESVLKRTIWK---------------GKFEMI  140 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~--g~~dg~v~iwd~~~~~~~~~---------------~~~~~~  140 (254)
                      ........... .....+...|.+++|+|++.. +++  |+.|+.|++||+.+++....               +...++
T Consensus       259 ~~~~~~~~~~~-~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          259 SAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             SSCCSSCSCCS-EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             eccccccceee-eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence            76544322110 223446678999999998654 444  45799999999876654321               112233


Q ss_pred             Ee--cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        141 YV--SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       141 ~~--~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                      ..  .++++++||+.++.   .+..-..|...|++++|+|+++ +++++.|++|+|||+....
T Consensus       338 ~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            33  46789999999884   3333344567899999999886 5668889999999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.87  E-value=1.2e-20  Score=167.42  Aligned_cols=189  Identities=11%  Similarity=0.065  Sum_probs=132.9

Q ss_pred             CCCEEEEecCCe---EEEEeCCCcEEEEeC-C-CCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEec
Q psy12788          8 VPPYALSWPAGY---ILAAGSDRIVTIYES-D-GRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~~~---l~s~s~D~~i~vWd~-~-g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~   80 (254)
                      .....++++++.   +++++.|+.|+||+. . |+....+ .... +|...|++++|+| ++++||+|+.|+ +++|++.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~-~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV-PLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC-CCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC-ceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            344567888864   445788999999993 3 2211111 1233 7899999999999 999999999996 9999986


Q ss_pred             CCCccee--ecCceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeeeeeeEee------------------ceeEE
Q psy12788         81 PSKSVWE--EQPNKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESVLKRTIWK------------------GKFEM  139 (254)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~~~~~~~------------------~~~~~  139 (254)
                      .......  ........|...|++++|+|+| ++|++|+.||.|++||+..++....                  +.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence            5422110  0001223467899999999998 6999999999999999865443211                  12334


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEEEEEE----CCCcEEEEeccCCc
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRYLVAR----TPDTLLLGDLHRNL  200 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~~v~~----~d~~i~i~dl~~~~  200 (254)
                      +...++.+++||+.++.  ....+...+ +..+..+.|++++++++++    .++.+++||+.+++
T Consensus       193 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             EEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            44557789999999873  222231233 3358999999999887765    68899999998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=2.5e-21  Score=169.17  Aligned_cols=160  Identities=11%  Similarity=0.065  Sum_probs=110.8

Q ss_pred             CCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECC---CCCEEEEEeCCc-EEEEEecCCCcceeecCceecC--CC
Q psy12788         26 DRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSP---SGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP--NL   97 (254)
Q Consensus        26 D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sP---dg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~--~~   97 (254)
                      |++|++|+  ++|+.+..+.     .|...++.++|+|   ++++||+|+.|+ +||||+.+.+....    ..-.  +.
T Consensus       156 d~~V~~~~~s~dG~~~~s~~-----~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t----L~g~~~~v  226 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQF-----LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK----MHIDDSYQ  226 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEE-----ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE----EECCC---
T ss_pred             CCcEEEEEECCCCceeeeec-----cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE----EcCCCcce
Confidence            88899998  5588776654     5677888889998   779999999996 99999765443211    1111  12


Q ss_pred             CcEeEEEEecCCCeE------------EEeecCCcEEEEeeeeeeeEe-------ece------------eEEEEecCCe
Q psy12788         98 YTISALSWKRDGSRI------------ACGGLCGSVELFESVLKRTIW-------KGK------------FEMIYVSPSQ  146 (254)
Q Consensus        98 ~~i~~l~~spdG~~l------------a~g~~dg~v~iwd~~~~~~~~-------~~~------------~~~~~~~~~~  146 (254)
                      ..+.+++|||||+++            ++|+.|++|++||..+++...       ++.            +..+...++.
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT  306 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT  306 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC
T ss_pred             eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc
Confidence            367888999999987            678899999999987665431       111            2345567899


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEec
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDL  196 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl  196 (254)
                      +++||+.++.  ....+..+.+..+..++|+|+++++ +|+.|++|+|||+
T Consensus       307 IkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          307 IAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTTCS--EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCc--EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999984  2333322222234469999998765 5777999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=8.5e-20  Score=168.86  Aligned_cols=190  Identities=14%  Similarity=0.060  Sum_probs=140.2

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCC----CEEEEeeecCCCCCCCC-EEEEEECC--CCCEEEEEeCCc
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDG----RVHRIFDYTAPHYKERE-FTVACSSP--SGQAVVVGSYDN   73 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g----~~~~~~~~~~~~~~~~~-v~~~a~sP--dg~~la~gs~d~   73 (254)
                      ..|...|.+++|+|+  +|++++ |+.|++|| .++    ++...+.     +|... |++++|+|  +|++||+|+.|+
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~sp~~~~~~l~s~~~dg   88 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFSPIKGSQYLCSGDESG   88 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEe-----cCCCceEEEEEECcCCCCCEEEEecCCC
Confidence            358889999999984  677777 88999999 667    6776664     78899 99999999  999999999996


Q ss_pred             -EEEEEecCCCc----ceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEe-----------
Q psy12788         74 -IKLFAWSPSKS----VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIW-----------  133 (254)
Q Consensus        74 -i~l~d~~~~~~----~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~-----------  133 (254)
                       +++||+.....    ..... .....+...|.+++|+|||++|++++.+    +.|.+||........           
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVK-SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH  167 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEE-EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred             EEEEEeCCCCccccccccccc-chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE
Confidence             99999753200    00110 1123356789999999999999999988    799999842111100           


Q ss_pred             ---ece-eEEEEecCCeEEEEeCCCCCceeeEEEEecCCC---ceeEEEEecC-cE-EEEEECCCcEEEEeccCCceee
Q psy12788        134 ---KGK-FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY---EITDVAIMGN-DR-YLVARTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       134 ---~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~---~i~~i~~~~~-~~-~~v~~~d~~i~i~dl~~~~~~~  203 (254)
                         ++. ..++...++.+++||+.++   ........+..   .|.+++|+|+ ++ +++++.|+.+++||+.+++...
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence               112 3445566788999999877   33333333455   8999999998 76 4557889999999999887543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2e-21  Score=171.74  Aligned_cols=192  Identities=12%  Similarity=0.138  Sum_probs=139.3

Q ss_pred             cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecC--CCCCCCCEEEEEECCCC-CEEEEEeCC---
Q psy12788          3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTA--PHYKEREFTVACSSPSG-QAVVVGSYD---   72 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~--~~~~~~~v~~~a~sPdg-~~la~gs~d---   72 (254)
                      +.+|...|.+++|+|+   .|++++.|++|++|| .+++++..+....  . +|...|++++|+|++ .+|++++.|   
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~~  239 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS-GIKQQLSVVEWHPKNSTRVATATGSDND  239 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS-CCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc-ccCCceEEEEECCCCCCEEEEEECCCCC
Confidence            3578999999999874   699999999999999 7777776664211  1 126789999999997 689999887   


Q ss_pred             -cEEEEEecCCCcceeecCceec-CCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeeeeeEee---------------
Q psy12788         73 -NIKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKR-DGSRIACGGLCGSVELFESVLKRTIWK---------------  134 (254)
Q Consensus        73 -~i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~~~~~~---------------  134 (254)
                       .+++||+.......    .... .|...|++++|+| ++++|++++.||.|++||+.+++....               
T Consensus       240 ~~i~~~d~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          240 PSILIWDLRNANTPL----QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             CCCCEEETTSTTSCS----BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT
T ss_pred             ceEEEEeCCCCCCCc----EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC
Confidence             68999976432211    1122 4677999999999 999999999999999999876544321               


Q ss_pred             -c-eeEEEEecCCeEEEEeCCCCCceee------------EEEEe--------------------cCCCceeEEEEecCc
Q psy12788        135 -G-KFEMIYVSPSQVLVKPLSGESKGRG------------VILKS--------------------QYGYEITDVAIMGND  180 (254)
Q Consensus       135 -~-~~~~~~~~~~~~~v~~~~~~~~~~~------------~~l~s--------------------~~~~~i~~i~~~~~~  180 (254)
                       + .+.++...++.+++|++.++.....            ..+..                    .+...+..++|++++
T Consensus       316 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  395 (416)
T 2pm9_A          316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG  395 (416)
T ss_dssp             TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT
T ss_pred             CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC
Confidence             1 2334445577899999976531000            00000                    034567899999999


Q ss_pred             EEEEE-ECCCcEEEEeccCC
Q psy12788        181 RYLVA-RTPDTLLLGDLHRN  199 (254)
Q Consensus       181 ~~~v~-~~d~~i~i~dl~~~  199 (254)
                      ++++. +.|++|+|||+.+.
T Consensus       396 ~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          396 KLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             EEECBCTTSSCBCCBCCCCC
T ss_pred             eEEEEeCCCCeEEEEEeccC
Confidence            88765 45889999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=1.9e-20  Score=173.26  Aligned_cols=189  Identities=15%  Similarity=0.104  Sum_probs=144.4

Q ss_pred             ccccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCC-CCEEEEEeCCc
Q psy12788          2 RVVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPS-GQAVVVGSYDN   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPd-g~~la~gs~d~   73 (254)
                      .+.+|...|.+++|+|+   .|++++.|++|++|| .+++++..+.     +|..   .|++++|+|+ |++|++|+.|+
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDR  229 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-----ccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence            35689999999999984   699999999999999 7778776664     6777   8999999999 99999999986


Q ss_pred             -EEEEEecCCCcceeecCceec---CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe----------------
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTI---PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW----------------  133 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~----------------  133 (254)
                       +++||+........    ...   .|...|++++|+ +|++|++++.||.|++||+..++...                
T Consensus       230 ~i~vwd~~~~~~~~~----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          230 KISCFDGKSGEFLKY----IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             CEEEEETTTCCEEEE----CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             eEEEEECCCCCEeEE----ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence             99999765432211    112   567899999999 99999999999999999987554332                


Q ss_pred             ---eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc------CCceeeE
Q psy12788        134 ---KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH------RNLLSEV  204 (254)
Q Consensus       134 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~------~~~~~~~  204 (254)
                         .+.+.++...++.+.+||+.++   ..+.....+...|.+++| |+  +++++.|+.+++||+.      .+.+..+
T Consensus       305 ~~~~~~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~  378 (615)
T 1pgu_A          305 VATGNGRIISLSLDGTLNFYELGHD---EVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSL  378 (615)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTEE---EEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred             EeCCCCeEEEEECCCCEEEEECCCC---cEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceEEE
Confidence               2223445566788999999876   333333445668888888 75  7778888888888864      3344555


Q ss_pred             eC
Q psy12788        205 LW  206 (254)
Q Consensus       205 ~~  206 (254)
                      .|
T Consensus       379 ~~  380 (615)
T 1pgu_A          379 DN  380 (615)
T ss_dssp             EC
T ss_pred             EE
Confidence            55

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-19  Score=163.26  Aligned_cols=189  Identities=9%  Similarity=-0.044  Sum_probs=133.9

Q ss_pred             CCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCC---EEEEeeecCC----------------------------------
Q psy12788          7 PVPPYALSWPAG-YILAAGSDRIVTIYE-SDGR---VHRIFDYTAP----------------------------------   47 (254)
Q Consensus         7 ~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~----------------------------------   47 (254)
                      ..++.+++|+++ .++.++.++.|++|| .+|+   .+..+.....                                  
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            356788999874 355555688999999 8888   6655542100                                  


Q ss_pred             ---------------CCCCCCEEEEEECCCCCEE-EEEeCCc-EEEEEec--CCCcceeecCceecCCCCcEeEEEEecC
Q psy12788         48 ---------------HYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWS--PSKSVWEEQPNKTIPNLYTISALSWKRD  108 (254)
Q Consensus        48 ---------------~~~~~~v~~~a~sPdg~~l-a~gs~d~-i~l~d~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd  108 (254)
                                     .+|...|++++|+|+|++| |+|+.|+ +++||+.  ..... ..  .....+...|++++|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~--~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-KL--RKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-EE--EEEEECSSCEEEEEECTT
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-ee--eecccCCCCceEEEEcCC
Confidence                           0123369999999999996 8898886 9999986  32221 11  111245578999999999


Q ss_pred             CCeEEEeecCCcEEEEeeeeeeeE--------------------ee---ceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788        109 GSRIACGGLCGSVELFESVLKRTI--------------------WK---GKFEMIYVSPSQVLVKPLSGESKGRGVILKS  165 (254)
Q Consensus       109 G~~la~g~~dg~v~iwd~~~~~~~--------------------~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  165 (254)
                      |++|++|+.+|.|++|++..++..                    .+   +.+.++...++.+++||+.++.  ....+..
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~  238 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVDKWLF  238 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEEEECC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eeeeeec
Confidence            999999999999999996433211                    12   3345555567789999998874  2222233


Q ss_pred             cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        166 QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       166 ~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .+...|.+++|+ +++ +++++.|++|+|||+.++++
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            456789999999 775 55678899999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=1.7e-19  Score=155.26  Aligned_cols=190  Identities=9%  Similarity=0.059  Sum_probs=141.2

Q ss_pred             cccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCC--CCCCEEEEEECCCCCEEEEEeCCc-EE
Q psy12788          3 VVQHPVPPYALSWPA--G-YILAAGSDRIVTIYES-DGRVHRIFDYTAPHY--KEREFTVACSSPSGQAVVVGSYDN-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~--~~~~v~~~a~sPdg~~la~gs~d~-i~   75 (254)
                      +.+|...|.+++|+|  + .|++|+.|++|++||. .......+.     +  |...|++++|+| +++|++++.|+ ++
T Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT-----NNEANLGICRICKYG-DDKLIAASWDGLIE  125 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB-----SCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred             eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc-----ccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence            457899999999986  5 7999999999999996 665554443     6  889999999999 99999999996 99


Q ss_pred             EEEecCCCcc-----eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee-eee----Ee------------
Q psy12788         76 LFAWSPSKSV-----WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL-KRT----IW------------  133 (254)
Q Consensus        76 l~d~~~~~~~-----~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~-~~~----~~------------  133 (254)
                      +||+......     ...  ...+.+...|++++|+|++  +++++.||.|++||+.. +..    ..            
T Consensus       126 iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EECHHHHTTBCEEEEESC--SSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEcccccccccccccCCe--eeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            9997530000     111  2233466789999999998  99999999999999876 221    10            


Q ss_pred             ---eceeEEEEecCCeEEEEeCCCC------CceeeEEEEecC--------CCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        134 ---KGKFEMIYVSPSQVLVKPLSGE------SKGRGVILKSQY--------GYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       134 ---~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~l~s~~--------~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                         ++.+.++...++.+.+|++...      .  ....+..+.        ...|.+++|+|+++ +++++.|+.+++||
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence               2334445555778999998765      3  334444332        23899999999876 55677899999999


Q ss_pred             ccCCceeeE
Q psy12788        196 LHRNLLSEV  204 (254)
Q Consensus       196 l~~~~~~~~  204 (254)
                      +.+++....
T Consensus       280 ~~~~~~~~~  288 (342)
T 1yfq_A          280 LQTRKKIKN  288 (342)
T ss_dssp             TTTTEEEEE
T ss_pred             CccHhHhhh
Confidence            999886433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.7e-20  Score=169.45  Aligned_cols=224  Identities=13%  Similarity=0.103  Sum_probs=150.4

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      +|...|.+++|+|+  .||+++.|++|++||..+ ++..++ ....-....+.+++|||||++||+|+.|+ +++||...
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            56788999999994  799999999999999554 554443 11000123599999999999999999996 99999765


Q ss_pred             CCc------ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee------Ee--e----------cee
Q psy12788         82 SKS------VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT------IW--K----------GKF  137 (254)
Q Consensus        82 ~~~------~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~------~~--~----------~~~  137 (254)
                      +..      ...........|...|.+++|||||  +|+++.|++|++||+..++.      ..  .          +..
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~  238 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYK  238 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTE
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCE
Confidence            321      0000000012355689999999999  88899999999999865441      11  1          111


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEE--ecCcEEE-EEECCCcEEEEeccC------Ccee------
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAI--MGNDRYL-VARTPDTLLLGDLHR------NLLS------  202 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~--~~~~~~~-v~~~d~~i~i~dl~~------~~~~------  202 (254)
                      .++ .+++.+++|++.++   ....+...+...|..++|  ++++..+ +++.+++ ++|.+..      +.+.      
T Consensus       239 LAS-a~~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~  313 (588)
T 2j04_A          239 VVL-TCPGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKK  313 (588)
T ss_dssp             EEE-ECSSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred             EEE-EeCCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCE
Confidence            222 24678999999887   444555457778999999  9887654 5666888 9998742      1100      


Q ss_pred             eEeCCCCCCceeEEe--eCceEEEEEeC-CeeEEEEeec
Q psy12788        203 EVLWPDSGRNEKFYF--DNVTVCLVFNA-GELSIIEYGN  238 (254)
Q Consensus       203 ~~~~~~~~g~~~~~~--~~~~~~~~~~~-g~~~~~~~~~  238 (254)
                      -..|+ ..|++...+  ...+.++.+++ |++..+.|..
T Consensus       314 v~lW~-~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          314 FKKWS-TIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             HHHTT-TTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEE-CCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence            11365 444433222  22466788888 7777666663

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=4.1e-20  Score=166.12  Aligned_cols=195  Identities=12%  Similarity=0.114  Sum_probs=138.4

Q ss_pred             cccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCC----EEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc
Q psy12788          3 VVQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGR----VHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN   73 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~----~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~   73 (254)
                      +.+|...|.+++|+|+   .|++|+.|++|++|| ..+.    .+... .... +|...|.+++|+| ++.+|++++.|+
T Consensus       177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg  254 (430)
T 2xyi_A          177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK-NIFT-GHTAVVEDVAWHLLHESLFGSVADDQ  254 (430)
T ss_dssp             EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS-EEEC-CCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc-eeec-CCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence            5689999999999973   799999999999999 4421    11111 1123 6888999999999 688999999886


Q ss_pred             -EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeee-eeEe----------------e
Q psy12788         74 -IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLK-RTIW----------------K  134 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~-~~~~----------------~  134 (254)
                       +++||+....... . ......|...|++++|+|+|+ +||+|+.||.|++||++.. +...                .
T Consensus       255 ~i~i~d~~~~~~~~-~-~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          255 KLMIWDTRNNNTSK-P-SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  332 (430)
T ss_dssp             EEEEEETTCSCSSS-C-SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred             eEEEEECCCCCCCc-c-eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence             9999976532100 0 011235677899999999998 6899999999999998652 2111                1


Q ss_pred             ce-eEEEEecCCeEEEEeCCCCCc-----------eeeEEEEecCCCceeEEEEecCcE--EEEEECCCcEEEEeccCCc
Q psy12788        135 GK-FEMIYVSPSQVLVKPLSGESK-----------GRGVILKSQYGYEITDVAIMGNDR--YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       135 ~~-~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~~d~~i~i~dl~~~~  200 (254)
                      +. +.++...++.+.+||+.....           ...+.....++..|..++|+|++.  +++++.|+.|+||++..+.
T Consensus       333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            11 234555678899999976210           012222234456799999999876  4567789999999998765


Q ss_pred             e
Q psy12788        201 L  201 (254)
Q Consensus       201 ~  201 (254)
                      +
T Consensus       413 ~  413 (430)
T 2xyi_A          413 Y  413 (430)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.7e-20  Score=170.45  Aligned_cols=185  Identities=17%  Similarity=0.165  Sum_probs=127.3

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEE--------E------------e-------eecCCCCCCCCEEE
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHR--------I------------F-------DYTAPHYKEREFTV   56 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~--------~------------~-------~~~~~~~~~~~v~~   56 (254)
                      ...|.+|+|+|+  +|||+|.|++|+  | ..++++.        .            +       ....  +|...|++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~--~~~~~V~~   90 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS--QPVCYPRV   90 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT--SCSCCEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec--CCCCcEEE
Confidence            467889999985  799999999995  3 2222110        0            0       0111  34678999


Q ss_pred             EEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCC-----CcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         57 ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNL-----YTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        57 ~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~-----~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      ++|||||++||+++.|+ +++||..   ..+.     .+.|.     ..|.+++|||||++||+|+.||+|+|||+..++
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~---~~l~-----~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDN---KMLT-----NLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETT---EEEE-----ECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCC---ceee-----eccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999999999999996 9999932   1221     11222     259999999999999999999999999987653


Q ss_pred             e----------E---ee----cee--------EEEEecCCeEEEEeCCCCCce-eeEEEEecCCCceeEEEEecCcEEEE
Q psy12788        131 T----------I---WK----GKF--------EMIYVSPSQVLVKPLSGESKG-RGVILKSQYGYEITDVAIMGNDRYLV  184 (254)
Q Consensus       131 ~----------~---~~----~~~--------~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~~~i~~i~~~~~~~~~v  184 (254)
                      .          .   ..    ..+        .++...+..+++|++..+... ....+...+...|.+++|+ +..+++
T Consensus       163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LAS  241 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVL  241 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEE
T ss_pred             cccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEE
Confidence            1          1   00    111        335556778899999876310 0123444455689999999 444555


Q ss_pred             EECCCcEEEEeccCCceeeEe
Q psy12788        185 ARTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       185 ~~~d~~i~i~dl~~~~~~~~~  205 (254)
                      + .+++|++||+.+++.....
T Consensus       242 a-~~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          242 T-CPGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             E-CSSEEEEEETTTTEEEEEE
T ss_pred             E-eCCeEEEEECCCCeEEEEE
Confidence            5 4799999999988874444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.7e-20  Score=177.29  Aligned_cols=190  Identities=11%  Similarity=0.157  Sum_probs=140.8

Q ss_pred             ccccCCCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCC--CCEEEEEeCC
Q psy12788          2 RVVQHPVPPYALSWPA----GYILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPS--GQAVVVGSYD   72 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPd--g~~la~gs~d   72 (254)
                      .+.+|..+|.+++|++    +.|++|+.|++|++|| .+++  .+..+    . +|...|++++|+|+  |++|++|+.|
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~----~-~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH----A-VHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE----C-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc----c-CCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            3568999999999974    4799999999999999 5665  34333    2 78899999999999  9999999999


Q ss_pred             c-EEEEEecCCCcceeecCceecCCCCcEeEEEEec-------------CCCeEEEeecCCcEEEEeeeeee----eEe-
Q psy12788         73 N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-------------DGSRIACGGLCGSVELFESVLKR----TIW-  133 (254)
Q Consensus        73 ~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------dG~~la~g~~dg~v~iwd~~~~~----~~~-  133 (254)
                      + +++||+........   .....+...|++++|+|             ||++|++|+.||.|++||+..+.    ... 
T Consensus       123 g~I~vwdl~~~~~~~~---~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          123 GKVSVVEFKENGTTSP---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             SEEEEEECCSSSCCCC---EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEeecCCCcce---eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence            6 99999765422111   22335667899999999             69999999999999999986541    111 


Q ss_pred             ---------------e---ceeEEEEecCCeEEEEeCCCCCceeeEEEE--ecCCCceeEEEEecCcEE-EEEECCCcEE
Q psy12788        134 ---------------K---GKFEMIYVSPSQVLVKPLSGESKGRGVILK--SQYGYEITDVAIMGNDRY-LVARTPDTLL  192 (254)
Q Consensus       134 ---------------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~~~i~~i~~~~~~~~-~v~~~d~~i~  192 (254)
                                     .   +.+.++...++.+++||+.++.......+.  ..+...|.+++|+|++++ ++++.|+.++
T Consensus       200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~  279 (753)
T 3jro_A          200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  279 (753)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred             ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence                           1   334455556778999998875210011111  124568999999998865 5567899999


Q ss_pred             EEeccCC
Q psy12788        193 LGDLHRN  199 (254)
Q Consensus       193 i~dl~~~  199 (254)
                      |||+.++
T Consensus       280 vwd~~~~  286 (753)
T 3jro_A          280 LWKENLE  286 (753)
T ss_dssp             CCBCCSS
T ss_pred             EEecCCC
Confidence            9999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.82  E-value=5.1e-18  Score=151.06  Aligned_cols=185  Identities=10%  Similarity=0.048  Sum_probs=134.9

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~   77 (254)
                      +.+|...|.+++|++  ..+++++.|++|++|| .+++++..+.     .|...+.+++|+|+|+++++++ .|+ +++|
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            347888999999976  4789999999999999 7778887765     5677899999999999885544 665 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee--------cCCcEEEEeeeeeeeEee---------------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG--------LCGSVELFESVLKRTIWK---------------  134 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~--------~dg~v~iwd~~~~~~~~~---------------  134 (254)
                      |......      ...+.....+.+++|+|||++|++++        .||.|++||...++....               
T Consensus       240 d~~~~~~------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  313 (433)
T 3bws_A          240 DRKTKLE------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNT  313 (433)
T ss_dssp             ETTTTEE------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSS
T ss_pred             ECCCCcE------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCC
Confidence            9653222      12233445699999999999999998        488999999865443211               


Q ss_pred             ceeE-EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC---------------CCcEEEEecc
Q psy12788        135 GKFE-MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART---------------PDTLLLGDLH  197 (254)
Q Consensus       135 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~---------------d~~i~i~dl~  197 (254)
                      +.+. ++...++.+.+||+.++.   ..... ..+..+..++|++++++ ++++.               |+.+++||+.
T Consensus       314 g~~l~~~~~~~~~v~v~d~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          314 ENKIYVSDMCCSKIEVYDLKEKK---VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTE---EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             CCEEEEEecCCCEEEEEECCCCc---EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            1111 222346788999998773   22222 34667999999998864 45554               3589999999


Q ss_pred             CCcee
Q psy12788        198 RNLLS  202 (254)
Q Consensus       198 ~~~~~  202 (254)
                      ++++.
T Consensus       390 ~~~~~  394 (433)
T 3bws_A          390 TDTVK  394 (433)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            88754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=1.6e-17  Score=145.86  Aligned_cols=206  Identities=13%  Similarity=0.098  Sum_probs=140.4

Q ss_pred             CCCCCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEEEe
Q psy12788          6 HPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAW   79 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~d~   79 (254)
                      +...+.+++|+|+  .| ++++.|++|++|| .++++++.+.     .+ ..+.+++|+|+|++|++++ .++ +++||.
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-----~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE-----CC-CCccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            3345899999984  44 6777999999999 7888877664     22 3899999999999886555 544 899996


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeeeeeeeEee---------------ceeE-EEEe
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTIWK---------------GKFE-MIYV  142 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~~~~~~~~---------------~~~~-~~~~  142 (254)
                      .....      ...+.+...+.+++|+|||++| ++++.++.|++||+.+++....               +.+. ++..
T Consensus       104 ~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A          104 TSNTV------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF  177 (391)
T ss_dssp             TTTEE------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             CCCeE------EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC
Confidence            54322      1223344578999999999988 6778899999999865543321               1122 2223


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEE---CCCcEEEEeccCCcee----------eEeCCC
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVAR---TPDTLLLGDLHRNLLS----------EVLWPD  208 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~---~d~~i~i~dl~~~~~~----------~~~~~~  208 (254)
                      .++.+.+||+.++.   ..... ..+..+..++|++++++ ++++   .++.+++||+.+++..          .+.|+ 
T Consensus       178 ~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s-  252 (391)
T 1l0q_A          178 DSMSISVIDTVTNS---VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVT-  252 (391)
T ss_dssp             TTTEEEEEETTTTE---EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEEC-
T ss_pred             CCCEEEEEECCCCe---EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEc-
Confidence            45689999998873   22222 23567899999998864 4455   5789999999987642          34555 


Q ss_pred             CCCceeEEe-eCceEEEEEeC
Q psy12788        209 SGRNEKFYF-DNVTVCLVFNA  228 (254)
Q Consensus       209 ~~g~~~~~~-~~~~~~~~~~~  228 (254)
                      ++|+..|.. ..+....+|+.
T Consensus       253 ~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          253 PDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEET
T ss_pred             cCCCEEEEEcCCCCEEEEEEC
Confidence            555444332 33444555554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.79  E-value=7.2e-18  Score=145.60  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=130.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE--CCCCCEEEEEeCCc-EEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS--SPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~--sPdg~~la~gs~d~-i~l   76 (254)
                      +.+|...|.+++|+|+  +|++++.|++|++|| .+++++...      +|...|++++|  +|++++|++++.|+ +++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v  155 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF  155 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec------cccCceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence            5679999999999984  799999999999999 666655422      57789999999  99999999999996 999


Q ss_pred             EEecCCCcceeecC------------------------------------ceecCCCCcEeEEEEecCCCe----EEEee
Q psy12788         77 FAWSPSKSVWEEQP------------------------------------NKTIPNLYTISALSWKRDGSR----IACGG  116 (254)
Q Consensus        77 ~d~~~~~~~~~~~~------------------------------------~~~~~~~~~i~~l~~spdG~~----la~g~  116 (254)
                      ||+...........                                    .........+..+++.+++..    +++|+
T Consensus       156 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (368)
T 3mmy_A          156 WDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS  235 (368)
T ss_dssp             ECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence            99765432211100                                    000011235667777777665    99999


Q ss_pred             cCCcEEEEeeeeeee-------------------------Ee------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe
Q psy12788        117 LCGSVELFESVLKRT-------------------------IW------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS  165 (254)
Q Consensus       117 ~dg~v~iwd~~~~~~-------------------------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  165 (254)
                      .||.|++||......                         ..      ++.+.++...++.+++||+.++   ..+....
T Consensus       236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~  312 (368)
T 3mmy_A          236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSE  312 (368)
T ss_dssp             TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECC
T ss_pred             CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEec
Confidence            999999999754311                         00      1223445556778999999987   3333334


Q ss_pred             cCCCceeEEEEecCcEE-EEEECCCcEEEEe
Q psy12788        166 QYGYEITDVAIMGNDRY-LVARTPDTLLLGD  195 (254)
Q Consensus       166 ~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~d  195 (254)
                      .+...|.+++|+|++++ ++++.|+..+.++
T Consensus       313 ~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          313 QLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            45678999999998865 5566776555444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1e-18  Score=158.11  Aligned_cols=165  Identities=14%  Similarity=0.184  Sum_probs=115.5

Q ss_pred             cCCCCCEEEEecCC--eEE----EEeCCCcEEEEe-CCC--------CEEEEeeecCCCCCCCCEEEEEECCC-CCEEEE
Q psy12788          5 QHPVPPYALSWPAG--YIL----AAGSDRIVTIYE-SDG--------RVHRIFDYTAPHYKEREFTVACSSPS-GQAVVV   68 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~----s~s~D~~i~vWd-~~g--------~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~   68 (254)
                      .|+..|.+++|+++  +|+    +|+.|++|+||| .++        +.+..+. ... +|...|++++|+|+ +++||+
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-LLK-DAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-CCC-SGGGSEEEEEECSSCTTEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-ccC-CCCCceEEEEECCCCCCEEEE
Confidence            35667999999984  677    788999999999 433        2222221 223 68889999999998 899999


Q ss_pred             EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeE
Q psy12788         69 GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQV  147 (254)
Q Consensus        69 gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  147 (254)
                      ++.|+ +++||.......     .....|...|++++|||||++||+|+.||.|++||.. ++...      ++.     
T Consensus       168 ~s~Dg~v~iwD~~~~~~~-----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~------~~~-----  230 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKV-----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK------VIP-----  230 (434)
T ss_dssp             EETTSCEEEEEESSSEEE-----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE------EEC-----
T ss_pred             EECCCeEEEEEcCCCcce-----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc------ccc-----
Confidence            99996 999998653221     1223456789999999999999999999999999975 21110      000     


Q ss_pred             EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC--CC------cEEEEeccCC
Q psy12788        148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART--PD------TLLLGDLHRN  199 (254)
Q Consensus       148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~------~i~i~dl~~~  199 (254)
                          ....       ....+...|.++.++++..|+++..  ++      .+++||+...
T Consensus       231 ----~~~~-------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 ----CPPF-------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ----CCTT-------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ----CCcc-------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                0000       0001123788999998888876543  32      3889999865

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.79  E-value=8.2e-17  Score=141.35  Aligned_cols=167  Identities=13%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      .+++++.|++|++|| .+++++..+.     .| ..+.+++|+|+|+++ ++++.|+ +++||....+.      ...+.
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------~~~~~   71 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIP-----VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------IATVP   71 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------EEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEee-----cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------EEEEE
Confidence            578999999999999 7788876664     34 358999999999987 5666675 99999654322      12233


Q ss_pred             CCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee---------------ceeE-EEEecCCeEEEEeCCCCCce
Q psy12788         96 NLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK---------------GKFE-MIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~---------------~~~~-~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ....+.+++|+|||++|++++ .++.|++||..+++....               +.+. ++...++.+.+||+.++.  
T Consensus        72 ~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--  149 (391)
T 1l0q_A           72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--  149 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred             CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence            444899999999999886555 569999999875543321               1122 233346789999998873  


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEE-E-EECCCcEEEEeccCCce
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYL-V-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~-v-~~~d~~i~i~dl~~~~~  201 (254)
                       ..... ..+..+..++|+++++++ + ++.++++++||+.++++
T Consensus       150 -~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~  192 (391)
T 1l0q_A          150 -VINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (391)
T ss_dssp             -EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             -EEEEE-ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence             22222 234578999999988654 4 44578999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.79  E-value=1.2e-18  Score=152.87  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=105.1

Q ss_pred             CeEEE--EeCCCcEEEEe-CCCC----------------EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEE
Q psy12788         18 GYILA--AGSDRIVTIYE-SDGR----------------VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKL   76 (254)
Q Consensus        18 ~~l~s--~s~D~~i~vWd-~~g~----------------~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l   76 (254)
                      +.++.  |+.|++|++|| .+++                ++..+    . +|..+|++++|+|+|++||+|+.| . +++
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~----~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i  222 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI----K-AHTNPIKMVRLNRKSDMVATCSQDGTIIRV  222 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEE----C-CCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE----E-ccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence            44444  57888999999 5443                13333    3 799999999999999999999999 5 899


Q ss_pred             EEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----ceeEEEEecCCeEEEEe
Q psy12788         77 FAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----GKFEMIYVSPSQVLVKP  151 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~v~~  151 (254)
                      ||........    ..... |...|++++|||||++||+|+.|++|++||+........    ..+...+....    |.
T Consensus       223 wd~~~~~~~~----~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~  294 (355)
T 3vu4_A          223 FKTEDGVLVR----EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE----WS  294 (355)
T ss_dssp             EETTTCCEEE----EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS----SC
T ss_pred             EECCCCcEEE----EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc----cc
Confidence            9976543321    11112 678999999999999999999999999999864321110    00000000000    00


Q ss_pred             CCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCC
Q psy12788        152 LSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRN  199 (254)
Q Consensus       152 ~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~  199 (254)
                      +      ....+..........++|++++.++ +++.|+.+.+|++..+
T Consensus       295 ~------~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          295 L------CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             S------EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             e------eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            0      1111111112335678999988654 5667899999997654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=1.2e-16  Score=140.03  Aligned_cols=182  Identities=9%  Similarity=0.006  Sum_probs=122.2

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCC-cEEEE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYD-NIKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d-~i~l~   77 (254)
                      +..|...|.+++|+|+  +|++|+.| .+++|| ..++......      + ..+..+++.|++++++ +|+.| .+++|
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE------M-RHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE------C-SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee------c-CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            3569999999999985  57776655 589999 5555443221      1 2477899999999885 46666 59999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCC-----------------------------------CeEEE--eecCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDG-----------------------------------SRIAC--GGLCGS  120 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG-----------------------------------~~la~--g~~dg~  120 (254)
                      |.......      ..+.+...|.+++|+|++                                   .++|+  |+.||.
T Consensus        87 d~~~~~~~------~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           87 DDVKKQDV------SRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             ETTTTEEE------EEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             ECCCCcEE------EEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            97543321      123344567777776653                                   34555  578999


Q ss_pred             EEEEeeeeee-----------------eE-e--------------eceeEEEEecCCe-EEEEeCCCCCceeeEEEEec-
Q psy12788        121 VELFESVLKR-----------------TI-W--------------KGKFEMIYVSPSQ-VLVKPLSGESKGRGVILKSQ-  166 (254)
Q Consensus       121 v~iwd~~~~~-----------------~~-~--------------~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~-  166 (254)
                      |++||+..++                 .. .              ++.+.++...++. +++||+.++.  ....+... 
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~  238 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGL  238 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTT
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC
Confidence            9999987533                 11 1              1234555666787 9999999885  33444422 


Q ss_pred             CCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc
Q psy12788        167 YGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       167 ~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~  200 (254)
                      +...|.+++|+|++++ ++++.|++++|||+..+.
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            6779999999998865 457789999999998653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.78  E-value=1.6e-17  Score=149.13  Aligned_cols=169  Identities=13%  Similarity=0.159  Sum_probs=113.9

Q ss_pred             CeEEEEeCC------CcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEEEecCCCccee
Q psy12788         18 GYILAAGSD------RIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLFAWSPSKSVWE   87 (254)
Q Consensus        18 ~~l~s~s~D------~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~d~~~~~~~~~   87 (254)
                      ..|+.++.+      ++|++||.+|...+.+.     +|...+.+++|||||++||+++.+    .+++||......   
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---  215 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---  215 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence            456666654      79999996666565554     567789999999999999999876    478888654322   


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeEE-EeecCCc--EEEEeeeeeeeEe--e---ceeEEEEecC-----------C--e
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGS--VELFESVLKRTIW--K---GKFEMIYVSP-----------S--Q  146 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~--v~iwd~~~~~~~~--~---~~~~~~~~~~-----------~--~  146 (254)
                         .....+...+.+++|||||++|| +++.++.  |++||+.+++...  .   ....+.++++           +  +
T Consensus       216 ---~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~  292 (415)
T 2hqs_A          216 ---RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  292 (415)
T ss_dssp             ---EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             ---EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence               11233456799999999999988 6666665  8889976554321  0   0112222222           2  5


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECC---CcEEEEeccCCce
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTP---DTLLLGDLHRNLL  201 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d---~~i~i~dl~~~~~  201 (254)
                      +.++|+.++.   ...+ ...+..+..++|+|++++++. +.+   ..|.+||+.++++
T Consensus       293 i~~~d~~~~~---~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          293 VYKVNINGGA---PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EEEEETTSSC---CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             EEEEECCCCC---EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            6666777662   2222 234567889999999876654 333   4899999998865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=8.2e-17  Score=143.24  Aligned_cols=185  Identities=11%  Similarity=0.032  Sum_probs=129.8

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeee-cCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDY-TAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~-~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      ...+.+++|+|+  .+++++.|++|++|| .+|+..+.+.. ... +|...|.+++|+|+|+++++++.|+ +++||...
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            345668999874  577777889999999 67887754432 222 5778899999999999999999885 99999754


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee---------------ceeEEEEe---
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK---------------GKFEMIYV---  142 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~---------------~~~~~~~~---  142 (254)
                      ......     ...+...+.+++|+|||+++++++ .++.|++||+..++....               +.+..+..   
T Consensus       201 ~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          201 LAYKAT-----VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             CCEEEE-----EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEES
T ss_pred             ceEEEE-----EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCC
Confidence            332211     123556899999999999885554 799999999865543321               11222222   


Q ss_pred             -----cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEE-EECCCcEEEEeccCCce
Q psy12788        143 -----SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLV-ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       143 -----~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~~d~~i~i~dl~~~~~  201 (254)
                           .++.+.+||+.++.   ..... .+...+..++|+|+++ +++ ++.++++++||+.++++
T Consensus       276 ~~~~~~dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~  337 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEK---LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV  337 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTE---EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CccccCCCeEEEEECCCCc---EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence                 24578899998773   33222 2234788999999874 434 46688999999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.76  E-value=2.8e-16  Score=140.89  Aligned_cols=186  Identities=15%  Similarity=0.162  Sum_probs=125.6

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCC---cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCCc-
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDR---IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYDN-   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~---~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d~-   73 (254)
                      .+.+|...+.+++|+|+  .|++++.|+   +|++|| .+|++. .+.     .|...+.+++|+|||++|| +++.++ 
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~-----~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-----SFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE-----CCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee-----cCCCcccCEEEcCCCCEEEEEEecCCC
Confidence            35678899999999984  699999885   999999 677665 332     5667899999999999888 566553 


Q ss_pred             --EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CC--cEEEEeeeeeeeEe---------------
Q psy12788         74 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CG--SVELFESVLKRTIW---------------  133 (254)
Q Consensus        74 --i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg--~v~iwd~~~~~~~~---------------  133 (254)
                        +++||...  +...    ....+...+.+++|||||++|++++. ++  .|.+||...++...               
T Consensus       247 ~~i~~~d~~~--~~~~----~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp  320 (415)
T 2hqs_A          247 LNLYVMDLAS--GQIR----QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS  320 (415)
T ss_dssp             CEEEEEETTT--CCEE----ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT
T ss_pred             ceEEEEECCC--CCEE----eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC
Confidence              56666443  2211    12334567999999999999998886 45  56666765443211               


Q ss_pred             eceeEEEEec---CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCC---cEEEEeccCCceeeE
Q psy12788        134 KGKFEMIYVS---PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPD---TLLLGDLHRNLLSEV  204 (254)
Q Consensus       134 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~---~i~i~dl~~~~~~~~  204 (254)
                      ++++.+....   ..++.+||+.++.   ...+...  ..+..++|+|+++++ .++.++   .|++||+..++...+
T Consensus       321 dG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          321 DGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             TSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             CCCEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence            1122222222   2367888988773   3333222  378999999998754 455555   799999986655433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.74  E-value=6.7e-16  Score=134.91  Aligned_cols=186  Identities=12%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             CEEEEecC----C-eEEEEeCCCcEEEEe-CCC---CEEEEeeecCCC-----C---------------CCCCEEEEEEC
Q psy12788         10 PYALSWPA----G-YILAAGSDRIVTIYE-SDG---RVHRIFDYTAPH-----Y---------------KEREFTVACSS   60 (254)
Q Consensus        10 v~~l~w~~----~-~l~s~s~D~~i~vWd-~~g---~~~~~~~~~~~~-----~---------------~~~~v~~~a~s   60 (254)
                      +.++-|-.    . -|+++++ .+|++|+ .++   +++.++.+....     .               +..+|.+++|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            44555532    2 3777776 5899999 778   666555421100     0               01257888999


Q ss_pred             CC----CCEEEEEeC--------------------Cc-EEEEEecCCCcceeecCceecCCCCcEeEEEEec---CCCeE
Q psy12788         61 PS----GQAVVVGSY--------------------DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR---DGSRI  112 (254)
Q Consensus        61 Pd----g~~la~gs~--------------------d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dG~~l  112 (254)
                      ||    ++++++++.                    |+ +++|++++..+..    .....|...++.++|||   ||.+|
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~----~s~~~~~~~v~~l~fs~~~g~~~~L  196 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK----ENQFLMPPEETILTFAEVQGMQEAL  196 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE----EEEEECCCSSCEEEEEEEETSTTEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee----eeeccCCCceeeEEeeccCCCCceE
Confidence            99    888888663                    43 6666664422211    11123455678889999   77999


Q ss_pred             EEeecCCcEEEEeeeeeeeEeec---------eeEEEEec----------------------CCeEEEEeCCCCCceeeE
Q psy12788        113 ACGGLCGSVELFESVLKRTIWKG---------KFEMIYVS----------------------PSQVLVKPLSGESKGRGV  161 (254)
Q Consensus       113 a~g~~dg~v~iwd~~~~~~~~~~---------~~~~~~~~----------------------~~~~~v~~~~~~~~~~~~  161 (254)
                      |+|+.|++|+|||+.+++.+..-         ...+.|++                      +.++++|+..++.   .+
T Consensus       197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---~l  273 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---SV  273 (356)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE---EE
T ss_pred             EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---EE
Confidence            99999999999999877644321         01112333                      3355667776662   22


Q ss_pred             EEEe---cCCC--ceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        162 ILKS---QYGY--EITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       162 ~l~s---~~~~--~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ....   ..|+  .+.+..++ ....++++.|++|+|||+.++++...
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~t  320 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTAL  320 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            1111   0122  23333333 12345567799999999999986543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=1.2e-15  Score=127.42  Aligned_cols=186  Identities=12%  Similarity=0.081  Sum_probs=121.1

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC-CCEEEEeeecCCCCC-CCCEEEEEECCCCCEEEEEeC--C-cE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-GRVHRIFDYTAPHYK-EREFTVACSSPSGQAVVVGSY--D-NI   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~-g~~~~~~~~~~~~~~-~~~v~~~a~sPdg~~la~gs~--d-~i   74 (254)
                      +..|...|.+++|+|+  +|++++ ++.|++|| .+ ++....+.     .+ ...+.+++|+|||++|++++.  + ..
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT-----GFATICNNDHGISPDGALYAISDKVEFGKS  110 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC-----TTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc-----ccccccccceEECCCCCEEEEEEeCCCCcc
Confidence            5578889999999984  577766 78999999 56 66553221     33 357889999999999999883  3 37


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEE-EeecCCcEEEEeeee--eeeEe--e---ceeEEEEec---
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGSVELFESVL--KRTIW--K---GKFEMIYVS---  143 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~v~iwd~~~--~~~~~--~---~~~~~~~~~---  143 (254)
                      +||.++.....     ...+.....+..++|+|||++|+ +++.++.+++|++..  ++...  .   ....+.+.+   
T Consensus       111 ~l~~~~~~~~~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          111 AIYLLPSTGGT-----PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             EEEEEETTCCC-----CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred             eEEEEECCCCc-----eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence            78887653332     12233334589999999999988 788899999998642  22111  0   111122222   


Q ss_pred             --------CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEE-EECC-----------CcEEEEeccCCce
Q psy12788        144 --------PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLV-ARTP-----------DTLLLGDLHRNLL  201 (254)
Q Consensus       144 --------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d-----------~~i~i~dl~~~~~  201 (254)
                              ++.+.+|++....  ........+...+..+.|+|++++++ ++.+           ..+.+||+.+++.
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence                    3445566554211  12222223345788899999887654 4443           4699999988764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.70  E-value=8e-16  Score=139.04  Aligned_cols=157  Identities=11%  Similarity=0.049  Sum_probs=107.6

Q ss_pred             CCCEEEEecC--CeEEEEeCCCcEEEEe-CC--------C--CEEEEeeec-CCCCCCCCEEEEEECCCCCEEE----EE
Q psy12788          8 VPPYALSWPA--GYILAAGSDRIVTIYE-SD--------G--RVHRIFDYT-APHYKEREFTVACSSPSGQAVV----VG   69 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~--------g--~~~~~~~~~-~~~~~~~~v~~~a~sPdg~~la----~g   69 (254)
                      ..+..++|++  ..|++++.|+ +++|+ .+        +  ..+..+... .- .+...|++++|+|+|++||    +|
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEecc
Confidence            3467788876  4788888887 89986 11        0  111111100 00 3456799999999999999    67


Q ss_pred             eCCc-EEEEEecCC--------CcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEeeceeEE
Q psy12788         70 SYDN-IKLFAWSPS--------KSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWKGKFEM  139 (254)
Q Consensus        70 s~d~-i~l~d~~~~--------~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~~~~~~  139 (254)
                      +.|+ +++||+...        +.....  .....|...|++|+|+|+ +++||+++.||+|++||++.+...       
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-------  185 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-------  185 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-------
T ss_pred             CCCceEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-------
Confidence            7785 999997532        000000  111235678999999998 899999999999999998644211       


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEecc
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLH  197 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~  197 (254)
                                            .....+...|.+++|+++++ +++++.|+++++||++
T Consensus       186 ----------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          186 ----------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             ----------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             ----------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence                                  01112345799999999885 5567889999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.70  E-value=1.3e-14  Score=134.83  Aligned_cols=222  Identities=10%  Similarity=0.070  Sum_probs=142.4

Q ss_pred             ecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecC
Q psy12788         15 WPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQP   90 (254)
Q Consensus        15 w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~   90 (254)
                      +++  ..+++++.|++|.+|| .++++++++..    ++  .+.+++|+|||++|++++.|+ +++||.......  .  
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~--  214 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--K--  214 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--E--
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc--E--
Confidence            555  3688889999999999 78999888751    23  388999999999999999885 999997211221  1  


Q ss_pred             ceecCCCCcEeEEEEec----CCCeEEEeec-CCcEEEEeeeeeeeEee-----------------ceeEEEE-------
Q psy12788         91 NKTIPNLYTISALSWKR----DGSRIACGGL-CGSVELFESVLKRTIWK-----------------GKFEMIY-------  141 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~sp----dG~~la~g~~-dg~v~iwd~~~~~~~~~-----------------~~~~~~~-------  141 (254)
                      ...++....+..++|||    ||++|++++. +++|.+||..+++.+..                 ....+.+       
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            22334445689999999    9999999995 89999999755433210                 0111222       


Q ss_pred             ----ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC-CCcEEEEeccCCceeeEeCC---CCCCc
Q psy12788        142 ----VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART-PDTLLLGDLHRNLLSEVLWP---DSGRN  212 (254)
Q Consensus       142 ----~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~-d~~i~i~dl~~~~~~~~~~~---~~~g~  212 (254)
                          ..++++.++|..+.+.  .....-..+..+..+.|+|+++| ++++. +++|.+||+.++++....--   +..+.
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~--l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~  372 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDN--LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  372 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSS--CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred             EEEECCCCeEEEEEecCCCc--ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence                2345778888876531  11111124566889999999875 45554 78999999999987543210   01111


Q ss_pred             -eeEEeeCceEEEEEe---CCeeEEEEeec-------CeeeeeeecC
Q psy12788        213 -EKFYFDNVTVCLVFN---AGELSIIEYGN-------NEILTCVRIP  248 (254)
Q Consensus       213 -~~~~~~~~~~~~~~~---~g~~~~~~~~~-------~~~~~~~~~~  248 (254)
                       ..|...+.....+-+   ++.+.+++...       -.++.++.+.
T Consensus       373 g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          373 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             CcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence             122211112223322   35677787765       4566666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.65  E-value=9.7e-14  Score=118.43  Aligned_cols=226  Identities=15%  Similarity=0.135  Sum_probs=137.1

Q ss_pred             CCEEEEecCC--e-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe------------CC
Q psy12788          9 PPYALSWPAG--Y-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS------------YD   72 (254)
Q Consensus         9 ~v~~l~w~~~--~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs------------~d   72 (254)
                      .+..++|+|+  . +++++.++.|.+|| .+++.+..+.......+...+..++|+|||++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            5788999984  4 45666788999999 7788876665211000112566899999999988875            34


Q ss_pred             -cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---ce--eEEEEecC--
Q psy12788         73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---GK--FEMIYVSP--  144 (254)
Q Consensus        73 -~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~~--~~~~~~~~--  144 (254)
                       .+++||....+..      ..+.....+..++|+|||++|+++  ++.|.+||..+++....   +.  ....+..+  
T Consensus       115 ~~i~v~d~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  186 (337)
T 1pby_B          115 TRVALYDAETLSRR------KAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             CEEEEEETTTTEEE------EEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             ceEEEEECCCCcEE------EEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCcc
Confidence             5889996432211      122233457889999999999888  68999999876544321   00  00000000  


Q ss_pred             ---------C-----------------------eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEECCCcE
Q psy12788        145 ---------S-----------------------QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVARTPDTL  191 (254)
Q Consensus       145 ---------~-----------------------~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~d~~i  191 (254)
                               +                       ++.++|+.++.   ...+. ......+..++|+|+++++... ++.+
T Consensus       187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v  262 (337)
T 1pby_B          187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---MAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVL  262 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECTTSSEEEEE-ESEE
T ss_pred             EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC---ceEeecCCCCCceeeEEECCCCCEEEEe-CCeE
Confidence                     0                       46788888874   21221 2233467789999988766555 7899


Q ss_pred             EEEeccCCceeeE-eCCCCCCceeEEee--CceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788        192 LLGDLHRNLLSEV-LWPDSGRNEKFYFD--NVTVCLVFNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       192 ~i~dl~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      .+||+.+++.... ...  ..-....+.  +..+......+.+.+++....++++.+++.
T Consensus       263 ~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          263 ESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEECCCCcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999998875322 211  011111221  122222222356667776666677777665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.65  E-value=2.3e-13  Score=116.41  Aligned_cols=171  Identities=10%  Similarity=0.128  Sum_probs=112.5

Q ss_pred             EEEEeCCCcEEEEeC--CCCE--EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCcee
Q psy12788         20 ILAAGSDRIVTIYES--DGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        20 l~s~s~D~~i~vWd~--~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~   93 (254)
                      +++++.|+.|++||.  +|+.  +..+      .+...+.+++|+|+|++|++++.+  .+++|+++...+.+..  ...
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~   79 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAE   79 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeE------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--ccc
Confidence            455578999999983  3532  2222      345678899999999999888875  4899998743333322  122


Q ss_pred             cCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee---eeeeeEe---------------eceeEEEEe-cCCeEEEEeCC
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGL-CGSVELFES---VLKRTIW---------------KGKFEMIYV-SPSQVLVKPLS  153 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~---~~~~~~~---------------~~~~~~~~~-~~~~~~v~~~~  153 (254)
                      +.....+..++|+|||++|++++. ++.|.+||+   ...+...               ++.+.++.. .++.+.+|++.
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            233347889999999998877765 888999998   4333221               112233322 56789999998


Q ss_pred             C-CCceeeE--EEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccC
Q psy12788        154 G-ESKGRGV--ILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHR  198 (254)
Q Consensus       154 ~-~~~~~~~--~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~  198 (254)
                      + +......  .+....+..+..++|+|+++++ +++ .++.+.+||+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            7 4210101  2233345678899999988744 454 578999999953

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.64  E-value=3.9e-13  Score=114.96  Aligned_cols=184  Identities=16%  Similarity=0.108  Sum_probs=118.0

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCC-CcEEEEe-C--CCCEE--EEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-E
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSD-RIVTIYE-S--DGRVH--RIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-I   74 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D-~~i~vWd-~--~g~~~--~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i   74 (254)
                      .|...|..++|+|+  .|++++.+ +.|++|+ .  +|+..  ..+.     .+ ..+..++|+|+|++|++++. ++ +
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~~~~~i  108 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----LP-GSLTHISTDHQGQFVFVGSYNAGNV  108 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----CS-SCCSEEEECTTSSEEEEEETTTTEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-----cC-CCCcEEEEcCCCCEEEEEecCCCeE
Confidence            46778899999984  58888776 8999999 4  45533  2222     22 36789999999998877765 54 8


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeee-eeeE------ee-----ceeEEEE
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVL-KRTI------WK-----GKFEMIY  141 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~-~~~~------~~-----~~~~~~~  141 (254)
                      ++||+. .......  .........+.+++|+|||++|++++ .++.|.+||+.. ++..      ..     ....+.+
T Consensus       109 ~~~d~~-~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          109 SVTRLE-DGLPVGV--VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             EEEEEE-TTEEEEE--EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             EEEECC-CCccccc--cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence            999975 1221111  22233445688999999999998888 899999999865 4321      00     1111222


Q ss_pred             -----------ecCCeEEEEeCCC--CCceeeEEEEecC-----CCceeEEEEecCcEEEE-EE-CCCcEEEEecc
Q psy12788        142 -----------VSPSQVLVKPLSG--ESKGRGVILKSQY-----GYEITDVAIMGNDRYLV-AR-TPDTLLLGDLH  197 (254)
Q Consensus       142 -----------~~~~~~~v~~~~~--~~~~~~~~l~s~~-----~~~i~~i~~~~~~~~~v-~~-~d~~i~i~dl~  197 (254)
                                 ..++.+.+|++..  +.......+....     ...+..++|+|+++++. +. .++.+.+||+.
T Consensus       186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence                       2356788888853  3100011121111     12456799999886543 44 57899999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.64  E-value=1.2e-13  Score=128.17  Aligned_cols=193  Identities=10%  Similarity=0.042  Sum_probs=127.5

Q ss_pred             CCCCCEEEEecC----C--eEEEEeC-CCcEEEEe-CCCCEEEEeeecC---C--CCCCC-CEEEEEECCCCCEEEEEe-
Q psy12788          6 HPVPPYALSWPA----G--YILAAGS-DRIVTIYE-SDGRVHRIFDYTA---P--HYKER-EFTVACSSPSGQAVVVGS-   70 (254)
Q Consensus         6 h~~~v~~l~w~~----~--~l~s~s~-D~~i~vWd-~~g~~~~~~~~~~---~--~~~~~-~v~~~a~sPdg~~la~gs-   70 (254)
                      +...+..++|+|    +  +|++++. |++|.+|| .++++++++....   +  .-|+. .+.+++++|++..+++.. 
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            445678999998    5  6777774 89999999 7889888875210   0  00222 689999999887765544 


Q ss_pred             CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee--------------
Q psy12788         71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK--------------  134 (254)
Q Consensus        71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~--------------  134 (254)
                      .++ +.+||........    ...+++...+..++|+|||+++++++ .+++|.+||..++++...              
T Consensus       300 ~~g~i~vvd~~~~~~l~----~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLT----VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             TTTEEEEEECTTSSSCE----EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             CCCeEEEEEecCCCcce----eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence            444 8888865432211    11233445678899999999876655 589999999876554321              


Q ss_pred             ------ceeEEEEe-cCCeEEEEeCCCCCc----eeeEEEEecCCCceeEEEEecCcEEEEEEC--------CCcEEEEe
Q psy12788        135 ------GKFEMIYV-SPSQVLVKPLSGESK----GRGVILKSQYGYEITDVAIMGNDRYLVART--------PDTLLLGD  195 (254)
Q Consensus       135 ------~~~~~~~~-~~~~~~v~~~~~~~~----~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--------d~~i~i~d  195 (254)
                            +...++.. +++.+.+||..+++.    .+.+.....++..+..|+++|+++++...+        +++|.|||
T Consensus       376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence                  11112222 457899999987210    022222223456788899999988776654        67999999


Q ss_pred             ccCCcee
Q psy12788        196 LHRNLLS  202 (254)
Q Consensus       196 l~~~~~~  202 (254)
                      +.++++.
T Consensus       456 ~~~~~~~  462 (543)
T 1nir_A          456 LKNLDAK  462 (543)
T ss_dssp             TTCTTSC
T ss_pred             CCCCCCC
Confidence            9987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=2.6e-14  Score=135.90  Aligned_cols=115  Identities=8%  Similarity=-0.023  Sum_probs=85.3

Q ss_pred             CCCCEEEEecCC--eEEEEeC-CC-----cEEEEe-CCCCEEEEeeecCCCCCC----------------------CCEE
Q psy12788          7 PVPPYALSWPAG--YILAAGS-DR-----IVTIYE-SDGRVHRIFDYTAPHYKE----------------------REFT   55 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~-D~-----~i~vWd-~~g~~~~~~~~~~~~~~~----------------------~~v~   55 (254)
                      ...|..++|+|+  .|++++. |+     +|++|| .+|+..+.+...   .+.                      ..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK---VVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG---GTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh---hcccccccccchhhhhhhhhhhccccCcc
Confidence            456899999985  7999988 88     899999 677766555321   111                      2378


Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEecCCCc-ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         56 VACSSPSGQAVVVGSYDNIKLFAWSPSKS-VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~d~i~l~d~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      +++|||||++|++++...+++||...... ..    .....+...+..++|||||++||.++ ++.|.+||+..+
T Consensus       113 ~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~----~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV----RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEESSSCSTTSC----CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             eeEECCCCCEEEEEeCCcEEEEECCCCCcceE----EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            89999999999999876788999754310 11    11223446799999999999999987 569999997654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=4.6e-13  Score=115.82  Aligned_cols=237  Identities=9%  Similarity=0.039  Sum_probs=136.6

Q ss_pred             cCCCCCEEEEecCC-eEEEEeC---CCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EE
Q psy12788          5 QHPVPPYALSWPAG-YILAAGS---DRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IK   75 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~l~s~s~---D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~   75 (254)
                      .+...|..++|+|+ .|++++.   |+.|++|| ..|+  .+..+.     .+...+..++|+|||++|++++ .++ ++
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-----~~~~~p~~~a~spdg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-----APGTPPAYVAVDEARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-----EESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-----cCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence            35567888999985 3666654   68999999 4554  232221     2445678999999999988887 444 89


Q ss_pred             EEEecCCCcceeecCceecC--------CCCcEeEEEEecCCCeEEEeecCCcEEEEeee-eeeeEee---------cee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIP--------NLYTISALSWKRDGSRIACGGLCGSVELFESV-LKRTIWK---------GKF  137 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~--------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~-~~~~~~~---------~~~  137 (254)
                      +|++..... ..........        ....+.+++|+|||++++++..++.|.+||+. .++....         +..
T Consensus       112 v~~~~~~g~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          112 VMKIAADGA-LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEEECTTSC-EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEEeCCCCC-eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            999854222 1110001111        11248899999999976666678899999986 3322110         111


Q ss_pred             EEEEec-----------CCeEEEEeCCCCCceeeEEEE---ecCC-----CceeEEEEecCcEEE-EE-ECCCcEEEEec
Q psy12788        138 EMIYVS-----------PSQVLVKPLSGESKGRGVILK---SQYG-----YEITDVAIMGNDRYL-VA-RTPDTLLLGDL  196 (254)
Q Consensus       138 ~~~~~~-----------~~~~~v~~~~~~~~~~~~~l~---s~~~-----~~i~~i~~~~~~~~~-v~-~~d~~i~i~dl  196 (254)
                      .+.+.+           .+.+.+|++..... ....+.   ....     ..+..++|+|+++++ ++ ..++++.+||+
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTG-AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCC-ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            223333           34566777664110 111111   1111     347789999999754 44 45789999998


Q ss_pred             cC-Cc-------------eeeEeCCCCCCceeEEeeC-ceEEEEE--eC--CeeEEEEee--cCeeeeeeecCC
Q psy12788        197 HR-NL-------------LSEVLWPDSGRNEKFYFDN-VTVCLVF--NA--GELSIIEYG--NNEILTCVRIPT  249 (254)
Q Consensus       197 ~~-~~-------------~~~~~~~~~~g~~~~~~~~-~~~~~~~--~~--g~~~~~~~~--~~~~~~~~~~~~  249 (254)
                      .. ++             ...+.|+ ++|+..|.... .....+|  +.  |++..+...  .++..-.++-||
T Consensus       270 ~~~g~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~~~  342 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFPRDFDLD-PTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFLEH  342 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCCCEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEECC-
T ss_pred             CCCCcEEEeEEEecCCCCcCeEEEC-CCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccceecCCCcEEEehhh
Confidence            62 21             2245566 66665555432 2344445  43  555544432  344444455554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=2.3e-13  Score=116.52  Aligned_cols=181  Identities=10%  Similarity=0.022  Sum_probs=116.5

Q ss_pred             CCCCEEEEecCC--eEEEEeC-CCcEEEEe-CCCCE-EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC----cEEEE
Q psy12788          7 PVPPYALSWPAG--YILAAGS-DRIVTIYE-SDGRV-HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD----NIKLF   77 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~~g~~-~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d----~i~l~   77 (254)
                      ...+ .++|+|+  .|++++. +++|++|| .+++. ...+.     .+..+..+++|+|+|++++++..+    .+++|
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-----EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-----ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-----cCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            3445 8999884  4655555 88999999 67776 55543     233444459999999999876655    58888


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCc-EEEEeeeee--------eeEe------------ec
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGS-VELFESVLK--------RTIW------------KG  135 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~-v~iwd~~~~--------~~~~------------~~  135 (254)
                      |......      ...++....+.+++|+|||++|++++ .++. +.+|++...        +...            ++
T Consensus       114 d~~~~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          114 SFLKNKF------ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             ETTTTEE------EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             ECCCCCe------EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            8643221      11233344678999999999766665 4588 999996421        1100            11


Q ss_pred             eeEE-EEecCCeEEEEeCCCCCcee-eEEEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCce
Q psy12788        136 KFEM-IYVSPSQVLVKPLSGESKGR-GVILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNLL  201 (254)
Q Consensus       136 ~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~~  201 (254)
                      ++.. +...++.+.+||+.++.... ...+  ..+..+..++|+|+++++ ++. .++.+.+||+.++++
T Consensus       188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            2221 22235678899998774100 2222  234678899999998854 343 366899999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=4.2e-13  Score=111.73  Aligned_cols=164  Identities=9%  Similarity=0.018  Sum_probs=103.5

Q ss_pred             EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC-CCcceeecCceecCCCCc
Q psy12788         22 AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP-SKSVWEEQPNKTIPNLYT   99 (254)
Q Consensus        22 s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~-~~~~~~~~~~~~~~~~~~   99 (254)
                      +++.|++|++|| .+++.. .+.     .|...+.+++|+|||++|++++.+.+++||... ....  .  .....+...
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~-----~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~--~~~~~~~~~   86 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVW-----QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--K--VDTGFATIC   86 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEE-----EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--E--CCCTTCCCB
T ss_pred             CCCcceeEEEEeCCCCcee-eec-----cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--E--ecccccccc
Confidence            456789999999 555544 332     456789999999999999999866789999754 3221  1  111112357


Q ss_pred             EeEEEEecCCCeEEEee--cCCcEEEEeee--eeeeEe--------------eceeEE-EEecCCeEEEEeCCCCCceee
Q psy12788        100 ISALSWKRDGSRIACGG--LCGSVELFESV--LKRTIW--------------KGKFEM-IYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus       100 i~~l~~spdG~~la~g~--~dg~v~iwd~~--~~~~~~--------------~~~~~~-~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      +.+++|+|||++|++++  .++...||...  .++...              ++.+.+ +...++.+.+|++....  ..
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~  164 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GV  164 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CC
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC--Cc
Confidence            89999999999999999  44566776653  222110              111121 22334556677643221  11


Q ss_pred             EEEEecCCCceeEEEEecCcEEEE-EE-CCCcEEEEecc
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLV-AR-TPDTLLLGDLH  197 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v-~~-~d~~i~i~dl~  197 (254)
                      ......+...+..+.|+|++++++ ++ .++.+.||++.
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            222223445789999999887544 44 47889999775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.57  E-value=1.4e-12  Score=111.59  Aligned_cols=173  Identities=8%  Similarity=-0.044  Sum_probs=110.3

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEEecCCCcceeecCceecC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      .+++++.|++|++|| .+|+.+..+.     .+...+ .++|+|||+++++++. + .+.+||........    .....
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~----~~~~~   81 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQIT-----LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV----VAIQE   81 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEE-----CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE----EEEEE
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEE-----ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE----Eeccc
Confidence            478888999999999 7788876664     223445 9999999997777665 4 48888865433201    11112


Q ss_pred             CCCcEeEEEEecCCCeEEEeecCC---cEEEEeeeeeeeEee-----ceeEEEEe-----------cCCe-EEEEeCCCC
Q psy12788         96 NLYTISALSWKRDGSRIACGGLCG---SVELFESVLKRTIWK-----GKFEMIYV-----------SPSQ-VLVKPLSGE  155 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~dg---~v~iwd~~~~~~~~~-----~~~~~~~~-----------~~~~-~~v~~~~~~  155 (254)
                      +..+..+++|+|||++|+++..++   .|.+||...++....     ....+.+.           .+.. +.+|++..+
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            333444499999999999666553   899999865543221     11222222           2244 777777644


Q ss_pred             CceeeE-EEEecCCCceeEEEEecCcE-EEEEE-CCCcEEEEeccCCce
Q psy12788        156 SKGRGV-ILKSQYGYEITDVAIMGNDR-YLVAR-TPDTLLLGDLHRNLL  201 (254)
Q Consensus       156 ~~~~~~-~l~s~~~~~i~~i~~~~~~~-~~v~~-~d~~i~i~dl~~~~~  201 (254)
                      +..... ......+.....++|+|+++ ++++. .++++.+||+.++++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            210000 01113355688999999886 44554 477999999998875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.57  E-value=1.9e-12  Score=111.99  Aligned_cols=199  Identities=15%  Similarity=0.145  Sum_probs=119.4

Q ss_pred             cCCCCCEEEEecCC--eEEEEe-CCCcEEEEe--CCCCE--EEEeeecCCC----CCCCCEEEEEECCCCCEEEEEeCC-
Q psy12788          5 QHPVPPYALSWPAG--YILAAG-SDRIVTIYE--SDGRV--HRIFDYTAPH----YKEREFTVACSSPSGQAVVVGSYD-   72 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s-~D~~i~vWd--~~g~~--~~~~~~~~~~----~~~~~v~~~a~sPdg~~la~gs~d-   72 (254)
                      .|...|..++|+|+  .|++++ .|++|++|+  .+|..  +..+......    .+...+.+++|+|||++++++..+ 
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            46678899999984  577777 688999999  34443  2222211000    012348899999999966655555 


Q ss_pred             cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEE-eecCCcEEEEeeee--eeeEe----------------
Q psy12788         73 NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIAC-GGLCGSVELFESVL--KRTIW----------------  133 (254)
Q Consensus        73 ~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~-g~~dg~v~iwd~~~--~~~~~----------------  133 (254)
                      .+++|++..... ..............+..++|+|||++|++ +..++.|.+|++..  ++...                
T Consensus       163 ~v~~~~~~~~g~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (347)
T 3hfq_A          163 KVYVYNVSDAGQ-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG  241 (347)
T ss_dssp             EEEEEEECTTSC-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred             EEEEEEECCCCc-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence            489999873221 21100111222235788999999997666 45688999999763  22110                


Q ss_pred             --------eceeE-EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC-CCcEEEE--eccCCc
Q psy12788        134 --------KGKFE-MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART-PDTLLLG--DLHRNL  200 (254)
Q Consensus       134 --------~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~-d~~i~i~--dl~~~~  200 (254)
                              ++++. ++...++.+.+|++...+....+......+..+..++|+|++++ +++.. ++++.+|  |..+|+
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence                    11222 12233567788887633110111111223556889999999875 45555 4799999  666777


Q ss_pred             eeeE
Q psy12788        201 LSEV  204 (254)
Q Consensus       201 ~~~~  204 (254)
                      +..+
T Consensus       322 l~~~  325 (347)
T 3hfq_A          322 LSLL  325 (347)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.57  E-value=5.3e-12  Score=108.57  Aligned_cols=182  Identities=8%  Similarity=0.020  Sum_probs=120.0

Q ss_pred             CCCEEEEecCC--eEEEEeC-------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEE
Q psy12788          8 VPPYALSWPAG--YILAAGS-------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIK   75 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~-------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~   75 (254)
                      ..+..++|+++  .|++++.       +++|.+|| .+++.++.+..      ...+..++|+|+|+++++++. + .+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------DLKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------CCCcceEEECCCCCEEEEEecCCCEEE
Confidence            45788999884  6666663       56899999 77888877652      234678899999997666554 4 488


Q ss_pred             EEEecCCCcceeecCceecCCC--------CcEeEEEEecCCCeEEEee--cCCcEEEEeeeeeeeEee-----------
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNL--------YTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWK-----------  134 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~--------~~i~~l~~spdG~~la~g~--~dg~v~iwd~~~~~~~~~-----------  134 (254)
                      +||....+.....    .....        ..+.+++|+|||+++++++  .++.|.+||..+++....           
T Consensus       115 ~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          115 AIDAKTGEVKGRL----VLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EEETTTCCEEEEE----ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             EEeCCCCeeEEEE----ecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence            9986544332211    11111        1378899999999888887  378899999865543321           


Q ss_pred             -----ceeEEEEecCCeEEEEeCCCCCceeeEEEEec----CCCceeEEEEecCcE-EEEEEC-CCcEEEEeccCCcee
Q psy12788        135 -----GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ----YGYEITDVAIMGNDR-YLVART-PDTLLLGDLHRNLLS  202 (254)
Q Consensus       135 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~~~i~~i~~~~~~~-~~v~~~-d~~i~i~dl~~~~~~  202 (254)
                           +.+......++.+.++|+.++.   .......    ....+..++++++++ ++++.. ++.+.+||+.++++.
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence                 1122233345678889988873   2222221    234577899999875 445554 579999999988753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.56  E-value=3.2e-14  Score=134.86  Aligned_cols=112  Identities=9%  Similarity=0.036  Sum_probs=79.2

Q ss_pred             CCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCCCCEEEEEeCC----------c
Q psy12788          9 PPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPSGQAVVVGSYD----------N   73 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPdg~~la~gs~d----------~   73 (254)
                      .+.+++|+|+ .++..+.|++|++|| .+|++...+.     .|..   .|.+++|||||++||+++.+          .
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-----~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-----GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-----TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-----cccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            4778999985 333447899999999 6777665553     3332   48999999999999998763          3


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      +++||......  ... .....+...+..++|||||++||.++. +.|++||...+
T Consensus        93 i~~~d~~~~~~--~~l-~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A           93 YVLSKIPHGDP--QSL-DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             EEEEESSSCCC--EEC-CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred             EEEEECCCCce--Eec-cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence            66888654332  110 001122335889999999999999885 79999997654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=2.9e-12  Score=110.25  Aligned_cols=209  Identities=11%  Similarity=0.074  Sum_probs=131.9

Q ss_pred             CCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-----CCCEEEEEECCCCCEEEEEe--CCc-E
Q psy12788          7 PVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-----EREFTVACSSPSGQAVVVGS--YDN-I   74 (254)
Q Consensus         7 ~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-----~~~v~~~a~sPdg~~la~gs--~d~-i   74 (254)
                      ...+..++|+++   .+++...++.|.+|| .+++.+..+..... ..     +..+.+++|+|+|+++++++  .++ +
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR-KRTEEVRPLQPRELVADDATNTVYISGIGKESVI  166 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC-CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC-ccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence            345778888873   345556689999999 78888777653211 00     11278999999999877766  244 7


Q ss_pred             EEEEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec----------eeEEEEe-
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG----------KFEMIYV-  142 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~----------~~~~~~~-  142 (254)
                      .+||....+..      ..++ ....+..++|+|||++|++++.++.+.+||..+++.....          ...+.+. 
T Consensus       167 ~~~d~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          167 WVVDGGNIKLK------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEETTTTEEE------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEcCCCCceE------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            88885432221      1223 3345788999999999999999999999998655433210          0112222 


Q ss_pred             ----------cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEE-CCCcEEEEeccCCceeeEeCCCCC
Q psy12788        143 ----------SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVAR-TPDTLLLGDLHRNLLSEVLWPDSG  210 (254)
Q Consensus       143 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~-~d~~i~i~dl~~~~~~~~~~~~~~  210 (254)
                                .++.+.++|+.++.   ...... .+. ...++|+++++ ++++. .++++.+||+.++++....   +.
T Consensus       241 dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~-~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~---~~  312 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDTRNGN---ILAKVA-APE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF---DT  312 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEETTTCC---EEEEEE-CSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---EC
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCc---EEEEEE-cCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE---ec
Confidence                      23578888887774   222111 222 35799999876 45555 5789999999998764332   11


Q ss_pred             CceeEEeeCceEEEEEeC-CeeEEEEee
Q psy12788        211 RNEKFYFDNVTVCLVFNA-GELSIIEYG  237 (254)
Q Consensus       211 g~~~~~~~~~~~~~~~~~-g~~~~~~~~  237 (254)
                      +       ....++.|++ |...++...
T Consensus       313 ~-------~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          313 P-------THPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             C-------SEEEEEEECTTSCEEEEEEE
T ss_pred             C-------CCCCeEEEcCCCCEEEEEEc
Confidence            1       1235677776 654554443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=1.2e-12  Score=123.92  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=111.7

Q ss_pred             CCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecC-----
Q psy12788          8 VPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSP-----   81 (254)
Q Consensus         8 ~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~-----   81 (254)
                      ..|.+++|+|+..+..+.|++|++|| .++++. .+.     .+...+.+++|||||++||.+....+++|+...     
T Consensus        82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~-~l~-----~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVT-YLF-----DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTTTEEEEEETTEEEEEETTTTEEE-EEE-----CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCCCeEEEEECCEEEEEECCCCceE-Ecc-----CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccC
Confidence            57999999996433333569999999 555544 332     344568889999999999997554689999764     


Q ss_pred             CCcceeecCceecCCCC--------------cEeEEEEecCCCeEEEee-------------------------------
Q psy12788         82 SKSVWEEQPNKTIPNLY--------------TISALSWKRDGSRIACGG-------------------------------  116 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--------------~i~~l~~spdG~~la~g~-------------------------------  116 (254)
                      .....    . ...+..              .+.+++|||||++||+++                               
T Consensus       156 g~~~~----~-~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          156 SRAIA----V-TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             CCCEE----S-CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             CCcEE----e-ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence            32210    0 011111              258999999999999998                               


Q ss_pred             --cCCcEEEEeeeeeeeEee--------ceeEEEEecCC---------------eEEEEeCCCCCceeeEEEEecCCC--
Q psy12788        117 --LCGSVELFESVLKRTIWK--------GKFEMIYVSPS---------------QVLVKPLSGESKGRGVILKSQYGY--  169 (254)
Q Consensus       117 --~dg~v~iwd~~~~~~~~~--------~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~~~~--  169 (254)
                        .+..|.+||+.+++...-        ....+.+++++               .+.+||+.++.. ...........  
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~  309 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYV  309 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeE
Confidence              346799999865543210        01122333322               566778777620 12222111221  


Q ss_pred             -ceeEEEEec--CcEEEEEE-CCCcEEEEecc
Q psy12788        170 -EITDVAIMG--NDRYLVAR-TPDTLLLGDLH  197 (254)
Q Consensus       170 -~i~~i~~~~--~~~~~v~~-~d~~i~i~dl~  197 (254)
                       .+..+.|+|  +++++..+ .++.+.||++.
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence             246789999  88876654 56788888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=4.5e-12  Score=110.31  Aligned_cols=197  Identities=16%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             CCCCCEEEEecCCeEEEEe-CCCcEEEEe-C-CCCEE---EEeeecCC-----CCCCCCEEEEEECCCCCEEEEEeC-C-
Q psy12788          6 HPVPPYALSWPAGYILAAG-SDRIVTIYE-S-DGRVH---RIFDYTAP-----HYKEREFTVACSSPSGQAVVVGSY-D-   72 (254)
Q Consensus         6 h~~~v~~l~w~~~~l~s~s-~D~~i~vWd-~-~g~~~---~~~~~~~~-----~~~~~~v~~~a~sPdg~~la~gs~-d-   72 (254)
                      +...+..++++.+.|++++ .+++|.+|+ . .|...   ..+.+...     ..+...+.+++|+|||+++++++. + 
T Consensus        98 ~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A           98 MGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence            4556778888656666665 588999999 3 33221   11111100     011234688999999997766654 3 


Q ss_pred             cEEEEEecCCCc----c-eeec---CceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEe----------
Q psy12788         73 NIKLFAWSPSKS----V-WEEQ---PNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIW----------  133 (254)
Q Consensus        73 ~i~l~d~~~~~~----~-~~~~---~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~----------  133 (254)
                      .+++|+++....    . ....   ..........+..++|+|||++|++++ .++.|.+||+..++...          
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~  257 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN  257 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence            589999875442    1 1100   011223344678999999999988887 68999999986443210          


Q ss_pred             -----------eceeEEEE-ec-CCeEEEEeCC--CCCceeeEEEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEE--
Q psy12788        134 -----------KGKFEMIY-VS-PSQVLVKPLS--GESKGRGVILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLG--  194 (254)
Q Consensus       134 -----------~~~~~~~~-~~-~~~~~v~~~~--~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~--  194 (254)
                                 ++++.... .. ++.+.+|++.  ++.  ....-....+..+..++|+|+++++ +++ .++++.+|  
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~--~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT--LTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC--EEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc--EEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence                       12222222 23 4678888875  332  1111111225678899999998754 455 46789995  


Q ss_pred             eccCCceeeE
Q psy12788        195 DLHRNLLSEV  204 (254)
Q Consensus       195 dl~~~~~~~~  204 (254)
                      |..++++..+
T Consensus       336 d~~~g~~~~~  345 (361)
T 3scy_A          336 DQATGLLTDI  345 (361)
T ss_dssp             CTTTCCEEEC
T ss_pred             ECCCCcEeec
Confidence            6667876544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.54  E-value=2.9e-12  Score=109.91  Aligned_cols=226  Identities=11%  Similarity=0.032  Sum_probs=130.4

Q ss_pred             CCEEEEecCC--e-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC----CCCEEEEEECCCCCEEEEEeC---------
Q psy12788          9 PPYALSWPAG--Y-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK----EREFTVACSSPSGQAVVVGSY---------   71 (254)
Q Consensus         9 ~v~~l~w~~~--~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~----~~~v~~~a~sPdg~~la~gs~---------   71 (254)
                      .+..++|+|+  . +++.+.+++|.+|| .+++.+..+...   ..    ...+..++|+|||++|++++.         
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS---SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC---CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc---cccccccccccceEECCCCCEEEEEccccccccccc
Confidence            5789999984  3 45666789999999 677777655421   11    223678999999999998873         


Q ss_pred             ----CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---c---------
Q psy12788         72 ----DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---G---------  135 (254)
Q Consensus        72 ----d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~---------  135 (254)
                          ..+.+||....... ..  .....+...+.+++|+|||+ +++++  +.|.+||..+++....   +         
T Consensus       121 ~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  194 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEA-KP--VRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSA  194 (349)
T ss_dssp             EECCCEEEEEEGGGGGGB-CC--SEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred             ccCCCeEEEEECCCcccc-ce--eeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccC
Confidence                34889996532111 10  12223334688999999999 55543  4599999866543321   1         


Q ss_pred             ------------------eeEEEEecCC-----------eEEEEeCCCCCceeeEEEEecCCCceeEEEEec-CcEEEEE
Q psy12788        136 ------------------KFEMIYVSPS-----------QVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYLVA  185 (254)
Q Consensus       136 ------------------~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~  185 (254)
                                        .+.+.+..++           ....++..++.  ....-....+..+..++++| +++++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~  272 (349)
T 1jmx_B          195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THTQEFADLTELYFTGLRSPKDPNQIYG  272 (349)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred             ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc--EEecccccCCCcceeeEecCCCCCEEEE
Confidence                              0011111110           12224555553  11111122345678899999 8876655


Q ss_pred             ECCCcEEEEeccCCceeeE-eCCCCCCceeEEe--eCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788        186 RTPDTLLLGDLHRNLLSEV-LWPDSGRNEKFYF--DNVTVCLVFNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       186 ~~d~~i~i~dl~~~~~~~~-~~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      . ++.+.+||+.++++... ...  .......+  ++..+.+....+.+.+++....+.++.++++
T Consensus       273 ~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          273 V-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             E-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             E-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            5 88999999999875322 111  00111112  1222222222356777777666777777665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.54  E-value=4.6e-13  Score=126.76  Aligned_cols=186  Identities=10%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC-----CCEEEEeeecCCCCCCCC--------------EEEEEEC
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD-----GRVHRIFDYTAPHYKERE--------------FTVACSS   60 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~-----g~~~~~~~~~~~~~~~~~--------------v~~~a~s   60 (254)
                      +..|...+..++|+|+  .|+. +.|++|++|| .+     |+..+...     .+...              +.+++||
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~-----~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTI-----DGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCS-----CCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEecc-----CCCCCeEcccchhhhhcCCCceEEEC
Confidence            4456777889999985  5777 4789999999 55     66543221     12222              4789999


Q ss_pred             CCCCEEEEEeC---------------------------------C-cEEEEEecCCCcceeecCceecCCCCcEeEEEEe
Q psy12788         61 PSGQAVVVGSY---------------------------------D-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK  106 (254)
Q Consensus        61 Pdg~~la~gs~---------------------------------d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s  106 (254)
                      |||++||+++.                                 + .+++||.....  .... .....+...+.+++||
T Consensus       190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~--~~~~-~~~~~~~~~~~~~~~s  266 (706)
T 2z3z_A          190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK--TVYL-QTGEPKEKFLTNLSWS  266 (706)
T ss_dssp             TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE--EEEC-CCCSCTTCEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc--eEee-ccCCCCceeEeeEEEE
Confidence            99999999872                                 2 36677754322  1110 0111244579999999


Q ss_pred             cCCCeEEEeecCC-----cEEEEeeeee-eeE--e-e--ce-----eEEEEec--CCe----------EEEEeCC-CCCc
Q psy12788        107 RDGSRIACGGLCG-----SVELFESVLK-RTI--W-K--GK-----FEMIYVS--PSQ----------VLVKPLS-GESK  157 (254)
Q Consensus       107 pdG~~la~g~~dg-----~v~iwd~~~~-~~~--~-~--~~-----~~~~~~~--~~~----------~~v~~~~-~~~~  157 (254)
                      |||++|++++.++     .|.+||..++ +..  . .  ..     ..+.+++  +++          ..+|.+. ++. 
T Consensus       267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-  345 (706)
T 2z3z_A          267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-  345 (706)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-
T ss_pred             CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-
Confidence            9999999988876     8999998665 221  1 0  00     1134444  443          3344433 221 


Q ss_pred             eeeEEEEecCCCceeE-EEEecCcEEE-EEECC-C----cEEEEeccCCc
Q psy12788        158 GRGVILKSQYGYEITD-VAIMGNDRYL-VARTP-D----TLLLGDLHRNL  200 (254)
Q Consensus       158 ~~~~~l~s~~~~~i~~-i~~~~~~~~~-v~~~d-~----~i~i~dl~~~~  200 (254)
                       ....+ ......+.. ++|+++++.+ +++.+ +    .+..||+.+++
T Consensus       346 -~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          346 -LIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             -EEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             -EEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence             11112 222335666 7999988544 44443 3    56677887765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.53  E-value=5e-13  Score=126.64  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=113.1

Q ss_pred             CCEEEEecCC--eEEEEeCC---------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788          9 PPYALSWPAG--YILAAGSD---------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL   76 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D---------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l   76 (254)
                      .|..++|+|+  +|++++.|         +.+++|| .+|++ +.+. ... +|...+..++|||||+.||.++...+++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~~-~~~~~~~~~~~SPdG~~la~~~~~~i~~  138 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD-PPE-VSNAKLQYAGWGPKGQQLIFIFENNIYY  138 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC-CTT-CCSCCCSBCCBCSSTTCEEEEETTEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eecc-CCc-cccccccccEECCCCCEEEEEECCeEEE
Confidence            4899999985  68888765         6788999 56654 3332 122 3445588999999999999998777888


Q ss_pred             EEecCCCcceeecCceecCCCC------------------cEeEEEEecCCCeEEEeecCC-------------------
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLY------------------TISALSWKRDGSRIACGGLCG-------------------  119 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~------------------~i~~l~~spdG~~la~g~~dg-------------------  119 (254)
                      |+........     ....+..                  .+.+++|||||++||+++.++                   
T Consensus       139 ~~~~~g~~~~-----~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~  213 (723)
T 1xfd_A          139 CAHVGKQAIR-----VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (723)
T ss_dssp             ESSSSSCCEE-----EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             EECCCCceEE-----EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence            8865432211     0111111                  237899999999999998654                   


Q ss_pred             ---------------cEEEEeeeeeee--Eee----------ceeEEEEecCC--------------eEEEEeCCCCCce
Q psy12788        120 ---------------SVELFESVLKRT--IWK----------GKFEMIYVSPS--------------QVLVKPLSGESKG  158 (254)
Q Consensus       120 ---------------~v~iwd~~~~~~--~~~----------~~~~~~~~~~~--------------~~~v~~~~~~~~~  158 (254)
                                     .|++||+.+++.  ...          ....+.+++++              .+.+||+.++.  
T Consensus       214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--  291 (723)
T 1xfd_A          214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--  291 (723)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--
T ss_pred             eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--
Confidence                           789999865542  111          01123333333              45667777763  


Q ss_pred             eeEEEEecCCCce----eEEEEecCcEEEE---EECCC------cEEEEe-ccCCc
Q psy12788        159 RGVILKSQYGYEI----TDVAIMGNDRYLV---ARTPD------TLLLGD-LHRNL  200 (254)
Q Consensus       159 ~~~~l~s~~~~~i----~~i~~~~~~~~~v---~~~d~------~i~i~d-l~~~~  200 (254)
                      ....+.......+    ..++|+|++++++   ...++      .+.+|| +.+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            2222222222333    3789999887433   33455      577788 44444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.52  E-value=5.2e-13  Score=126.94  Aligned_cols=175  Identities=14%  Similarity=0.115  Sum_probs=112.9

Q ss_pred             CEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788         10 PYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS   84 (254)
Q Consensus        10 v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~   84 (254)
                      +.+++|+|+  .|++++. ++|++|| ..++  ....+    . .+...+..++|||||++||.++.+.+++||..... 
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l----~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~-  183 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL----T-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR-  183 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC----C-CSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTE-
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc----c-cCCcccccccCCCCCCEEEEEeCCcEEEEecCCCC-
Confidence            788999985  6787776 8999999 4551  33222    2 56678999999999999999987778899865322 


Q ss_pred             ceeecCceecCCCC----------------cEeEEEEecCCCeEEEeecCC-----------------------------
Q psy12788         85 VWEEQPNKTIPNLY----------------TISALSWKRDGSRIACGGLCG-----------------------------  119 (254)
Q Consensus        85 ~~~~~~~~~~~~~~----------------~i~~l~~spdG~~la~g~~dg-----------------------------  119 (254)
                       ...  . ...+..                .+.+++|||||++||+++.|+                             
T Consensus       184 -~~~--~-~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          184 -QMQ--L-TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             -EEE--C-CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             -EEE--e-ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence             111  0 011111                257899999999999998876                             


Q ss_pred             ----cEEEEeeee-eeeEe-----------------eceeEEEEec-----CCeEEEEeCCCCCceeeEEEEecCCC---
Q psy12788        120 ----SVELFESVL-KRTIW-----------------KGKFEMIYVS-----PSQVLVKPLSGESKGRGVILKSQYGY---  169 (254)
Q Consensus       120 ----~v~iwd~~~-~~~~~-----------------~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~---  169 (254)
                          .|.+||+.+ ++...                 ++++.+....     +..+.+||+.++.  ....+......   
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHETSPTWVP  337 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCC--EEEEEEEECSSCCC
T ss_pred             CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCc--eEEEEEcCCCCcCC
Confidence                788889766 54321                 1111111111     2357778888874  33333332222   


Q ss_pred             ceeEEEEecCcEEEEE-ECCCcEEEEecc
Q psy12788        170 EITDVAIMGNDRYLVA-RTPDTLLLGDLH  197 (254)
Q Consensus       170 ~i~~i~~~~~~~~~v~-~~d~~i~i~dl~  197 (254)
                      .+..++|+++++++.. ..++...||.+.
T Consensus       338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             cCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            3568999998876554 456667777544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.50  E-value=8.2e-13  Score=131.02  Aligned_cols=187  Identities=10%  Similarity=0.003  Sum_probs=121.3

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-------
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-------   72 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-------   72 (254)
                      +.+|...+..++|+|+  .|++++.|+.|++|| .+|+....+.     +|...+.+++|||||++||+++.+       
T Consensus       374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----CCCCCccceEECCCCCeEEEEecCccccccC
Confidence            4467788999999985  799999999999999 6777765543     577788999999999999887642       


Q ss_pred             ----cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---ceeEEEEecCC
Q psy12788         73 ----NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---GKFEMIYVSPS  145 (254)
Q Consensus        73 ----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~  145 (254)
                          .+++||.....  .    .....+...+.+++|+|||++|+.++.++...+|+.........   ..+.+.+..+.
T Consensus       449 ~~~~~i~l~d~~~g~--~----~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK--I----FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  522 (1045)
T ss_dssp             CCEEEEEEEETTTTE--E----EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             CCCCeEEEEECCCCc--E----EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence                47888864321  1    11223455788999999999999999999999998642221111   11222211111


Q ss_pred             eE-------------EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE------------E--CCCcEEEEeccC
Q psy12788        146 QV-------------LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA------------R--TPDTLLLGDLHR  198 (254)
Q Consensus       146 ~~-------------~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~------------~--~d~~i~i~dl~~  198 (254)
                      ..             ..+++....  .+......+...+..+++++++++++.            +  .+.++.+||+.+
T Consensus       523 ~~~~~~~~~~~~~~~~~~d~~g~~--~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~  600 (1045)
T 1k32_A          523 PNPTKLVPRSMTSEAGEYDLNDMY--KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  600 (1045)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGG--GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CCccccCcCccccccccccccCHh--HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCC
Confidence            10             012222110  111111223456889999998875553            1  234788889998


Q ss_pred             Ccee
Q psy12788        199 NLLS  202 (254)
Q Consensus       199 ~~~~  202 (254)
                      ++..
T Consensus       601 ~~~~  604 (1045)
T 1k32_A          601 RKVT  604 (1045)
T ss_dssp             CCEE
T ss_pred             CcEE
Confidence            8753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.50  E-value=4.3e-12  Score=117.74  Aligned_cols=180  Identities=14%  Similarity=0.091  Sum_probs=117.1

Q ss_pred             CCCCEEEEecCC--eEEEEeC-CCcEEEEeCCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeC---C-cEEEEE
Q psy12788          7 PVPPYALSWPAG--YILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSY---D-NIKLFA   78 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~-D~~i~vWd~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~---d-~i~l~d   78 (254)
                      ..+|++++|+|+  .||.++. |++++||+.+|...+.+.     .+. ..+.+++|||| +++++++.   + ..++|.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-----REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-----cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            457999999874  7888887 999999994444443332     344 57899999999 77777765   3 467888


Q ss_pred             ecC--CCcceeecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeeeeeeeEe-------------eceeEEEEe
Q psy12788         79 WSP--SKSVWEEQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTIW-------------KGKFEMIYV  142 (254)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~  142 (254)
                      ++.  ....      ..+.....+...+|+|||+.+ ++.+.++.+.+||+.+++...             ++++.+...
T Consensus        95 ~~~~~~g~~------~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           95 VNTSRPGEE------QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EETTSTTCC------EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE
T ss_pred             EeccCCCcc------ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEE
Confidence            765  3221      112222334567999999743 333445556699987654321             223333222


Q ss_pred             cC----CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCC--cEEEEeccCCcee
Q psy12788        143 SP----SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPD--TLLLGDLHRNLLS  202 (254)
Q Consensus       143 ~~----~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~--~i~i~dl~~~~~~  202 (254)
                      .+    .++.++|+.++.   ...+ ..+...+..++|+|++++++. ..++  .|++||+.+++..
T Consensus       169 ~~~~~~~~i~~~d~~~g~---~~~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGG---LRVF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEETTEEEEEEEETTTCC---CEEE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             EcCCCCeEEEEEcCCCCC---ceEe-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            22    457788888773   3344 334457899999999987664 3466  7999999987653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.46  E-value=3.7e-13  Score=127.75  Aligned_cols=108  Identities=19%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             EEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC---CEEEEEECCCCCEEEEEeC---------C-cEE
Q psy12788         11 YALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER---EFTVACSSPSGQAVVVGSY---------D-NIK   75 (254)
Q Consensus        11 ~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~---~v~~~a~sPdg~~la~gs~---------d-~i~   75 (254)
                      ..++|+|+ .++..+.|++|++|| .+|++.+.+.     .+..   .+.+++|||||++||+++.         + .++
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-----cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            37899985 566666799999999 6677665443     2221   4889999999999998875         4 478


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                      +||.....  ...  ...+  ...+..++|||||++||.+. ++.|++||+.+++
T Consensus        94 ~~d~~~g~--~~~--~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           94 IYDLSNGE--FVR--GNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EEETTTTE--ECC--SSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             EEECCCCc--ccc--ceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence            88854322  100  0111  24588999999999999985 8899999976543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.45  E-value=4.5e-12  Score=107.98  Aligned_cols=129  Identities=11%  Similarity=0.118  Sum_probs=85.6

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-CEEEEEECCCCCEEEEE-eCC-cEEEEEecCCCcceeecCceec
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVVG-SYD-NIKLFAWSPSKSVWEEQPNKTI   94 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-~v~~~a~sPdg~~la~g-s~d-~i~l~d~~~~~~~~~~~~~~~~   94 (254)
                      +|++++.|++|++|| .+++.++.+..    ++.. .+..++|+|+|++++++ +.+ .+.+||.........    ...
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~   74 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR----IDL   74 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE----EEC
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee----EEc
Confidence            688999999999999 67887766642    2211 47789999999876554 444 488998654332211    111


Q ss_pred             CC----CCcEeEEEEecCCCeEEEee------------cCCcEEEEeeeeeeeEee-----ceeEEEEec--------CC
Q psy12788         95 PN----LYTISALSWKRDGSRIACGG------------LCGSVELFESVLKRTIWK-----GKFEMIYVS--------PS  145 (254)
Q Consensus        95 ~~----~~~i~~l~~spdG~~la~g~------------~dg~v~iwd~~~~~~~~~-----~~~~~~~~~--------~~  145 (254)
                      .+    ...+..++|+|||++|++++            .++.|.+||..+++....     ....+.+.+        ++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCC
Confidence            11    11567899999999999986            579999999865543221     112222222        45


Q ss_pred             eEEEEeCCCC
Q psy12788        146 QVLVKPLSGE  155 (254)
Q Consensus       146 ~~~v~~~~~~  155 (254)
                      .+.++|+.++
T Consensus       155 ~i~~~d~~~~  164 (337)
T 1pby_B          155 DLHVMDPEAG  164 (337)
T ss_dssp             SEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            6788898877

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.43  E-value=3.1e-12  Score=126.84  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             CCCCCEEEEec-CC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-CEEEEEECCCCCEEEEEeCCc-EE-EEE
Q psy12788          6 HPVPPYALSWP-AG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-EFTVACSSPSGQAVVVGSYDN-IK-LFA   78 (254)
Q Consensus         6 h~~~v~~l~w~-~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-~v~~~a~sPdg~~la~gs~d~-i~-l~d   78 (254)
                      |...+..++|+ |+  .|++++ ++.+++|+ ..++.. .+    . .|.. .+..++|+ ||+.|+.++.+. +. +|+
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~----~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d  365 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KV----P-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD  365 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-EC----S-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-Ec----c-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence            44568999999 85  577777 78999999 455443 23    2 4566 79999999 999999988763 55 566


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ...  .....    ...+...+..++|||||++||+++.++.|++||+.+++..                          
T Consensus       366 ~~~--~~~~~----l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~--------------------------  413 (1045)
T 1k32_A          366 YRT--GKAEK----FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT--------------------------  413 (1045)
T ss_dssp             TTT--CCEEE----CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------------------
T ss_pred             CCC--CCceE----ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE--------------------------
Confidence            432  21111    1144568999999999999999999999999987543321                          


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEEE-EECC----------CcEEEEeccCCce
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYLV-ARTP----------DTLLLGDLHRNLL  201 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~v-~~~d----------~~i~i~dl~~~~~  201 (254)
                         .+...+...+..++|+|++++++ ++.+          ..+++||+.++++
T Consensus       414 ---~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          414 ---VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             ---EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             ---EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence               12112345688999999998665 3333          3899999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.42  E-value=1.3e-11  Score=105.81  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             EEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CC-cEEEEEecCCCccee
Q psy12788         13 LSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YD-NIKLFAWSPSKSVWE   87 (254)
Q Consensus        13 l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d-~i~l~d~~~~~~~~~   87 (254)
                      +++++  ..+++++.|++|++|| .+++.++.+..    +....+..++|+|+|+++++++ .+ .+.+||....+....
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            44554  3688999999999999 67887776642    1212467899999999765544 45 488888653322111


Q ss_pred             ecCceecCC-----CCcEeEEEEecCCCeEEEeecC------------CcEEEEeeee
Q psy12788         88 EQPNKTIPN-----LYTISALSWKRDGSRIACGGLC------------GSVELFESVL  128 (254)
Q Consensus        88 ~~~~~~~~~-----~~~i~~l~~spdG~~la~g~~d------------g~v~iwd~~~  128 (254)
                          ....+     ...+..++|+|||++|++++.+            +.|.+||+.+
T Consensus        81 ----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           81 ----ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             ----EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             ----EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence                11111     1237889999999999999876            8899999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.40  E-value=1.7e-11  Score=117.25  Aligned_cols=180  Identities=14%  Similarity=0.112  Sum_probs=112.2

Q ss_pred             EEEEecCC--eEEEEeCC---------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEE
Q psy12788         11 YALSWPAG--YILAAGSD---------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFA   78 (254)
Q Consensus        11 ~~l~w~~~--~l~s~s~D---------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d   78 (254)
                      ..++|+|+  .|+.++.|         +.+.+|| .+|++. .    +. .+...+..++|||||+.||.++...+++|+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~----l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T----EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKI  138 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-C----SS-CCCTTEEEEEECSSTTCEEEEETTEEEEES
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-E----cc-cCCCcceeeEECCCCCEEEEEECCeEEEEE
Confidence            44788985  68888776         4566999 555433 2    22 566789999999999999998766788888


Q ss_pred             ecCCCcceeecCceecCCC-----------------CcEeEEEEecCCCeEEEeecCCc-EEEEeeeeeee---Eeecee
Q psy12788         79 WSPSKSVWEEQPNKTIPNL-----------------YTISALSWKRDGSRIACGGLCGS-VELFESVLKRT---IWKGKF  137 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~-----------------~~i~~l~~spdG~~la~g~~dg~-v~iwd~~~~~~---~~~~~~  137 (254)
                      ....... ..   ..-.+.                 ....++.|||||++||.++.|.+ +.+|++.....   .+....
T Consensus       139 ~~~~~~~-~l---t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (740)
T 4a5s_A          139 EPNLPSY-RI---TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (740)
T ss_dssp             STTSCCE-EC---CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             CCCCceE-EE---cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence            6432211 10   000111                 12245899999999999987665 88888642211   111122


Q ss_pred             EEEEecCC------eEEEEeCCC---CCceeeEEEEe-----cCCCceeEEEEecCcEEEEEEC-----CCcEEEEeccC
Q psy12788        138 EMIYVSPS------QVLVKPLSG---ESKGRGVILKS-----QYGYEITDVAIMGNDRYLVART-----PDTLLLGDLHR  198 (254)
Q Consensus       138 ~~~~~~~~------~~~v~~~~~---~~~~~~~~l~s-----~~~~~i~~i~~~~~~~~~v~~~-----d~~i~i~dl~~  198 (254)
                      .+.|...+      ++.+||+.+   +.......+..     .....+..++|+|++++++...     +..|.+||+.+
T Consensus       215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            23333221      578899988   62001122221     1345688999999998655321     23689999998


Q ss_pred             Cc
Q psy12788        199 NL  200 (254)
Q Consensus       199 ~~  200 (254)
                      ++
T Consensus       295 g~  296 (740)
T 4a5s_A          295 SS  296 (740)
T ss_dssp             TT
T ss_pred             Cc
Confidence            76

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.37  E-value=2.4e-11  Score=116.32  Aligned_cols=109  Identities=11%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCC-----CEEEEEECCCCCEEEEEeCCc------
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKER-----EFTVACSSPSGQAVVVGSYDN------   73 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~-----~v~~~a~sPdg~~la~gs~d~------   73 (254)
                      .....++|+|+  +|+++  |++|++|| .+|++...+.     +|..     ....++|||||++||.++.++      
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE-----NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC-----TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe-----chhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence            34668999985  45554  99999999 7787765554     3322     234589999999999988642      


Q ss_pred             ----EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         74 ----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        74 ----i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                          +.+||+..  +...    ....+...+...+|||||++||.+ .++.|.+||...++
T Consensus        90 ~~~~~~~~d~~~--~~~~----~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           90 YTASYDIYDLNK--RQLI----TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEEEEEEETTT--TEEC----CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             cceEEEEEECCC--CcEE----EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence                34777543  2211    112234579999999999999988 57899999976543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.36  E-value=2.3e-12  Score=122.32  Aligned_cols=180  Identities=13%  Similarity=0.130  Sum_probs=109.4

Q ss_pred             CCEEEEecCC--eEEEEeC---------CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788          9 PPYALSWPAG--YILAAGS---------DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL   76 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~---------D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l   76 (254)
                      .+.+++|+|+  .|+.++.         |++|++|| .+|+.+..    .  .....+..++|||||+.||.++.+.+++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----~--~l~~~~~~~~~SPDG~~la~~~~~~i~~  134 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----N--ELPRPIQYLCWSPVGSKLAYVYQNNIYL  134 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----S--CCCSSBCCEEECSSTTCEEEEETTEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc----e--ecCcccccceECCCCCEEEEEECCeEEE
Confidence            4789999985  6887776         78999999 55554200    0  1224688899999999999998667889


Q ss_pred             EEecCCCcceeecCceecCCCC-----------------cEeEEEEecCCCeEEEeecC-CcEEEEeeeeee-eEeecee
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLY-----------------TISALSWKRDGSRIACGGLC-GSVELFESVLKR-TIWKGKF  137 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~-----------------~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~-~~~~~~~  137 (254)
                      |+.......  .  .....+..                 ...+++|||||++||+++.| +.+.+|.+.... ..+....
T Consensus       135 ~~~~~g~~~--~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          135 KQRPGDPPF--Q--ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             ESSTTSCCE--E--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             EeCCCCCcE--E--EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            986543221  0  00001111                 12589999999999999875 555666442110 0011111


Q ss_pred             EEEEec------CCeEEEEeCCCCCceee--EEEE-----ecCCCceeEEEEecCcEEEEEECC-----CcEEEEe----
Q psy12788        138 EMIYVS------PSQVLVKPLSGESKGRG--VILK-----SQYGYEITDVAIMGNDRYLVARTP-----DTLLLGD----  195 (254)
Q Consensus       138 ~~~~~~------~~~~~v~~~~~~~~~~~--~~l~-----s~~~~~i~~i~~~~~~~~~v~~~d-----~~i~i~d----  195 (254)
                      .+.|..      ..++.+||+.++.  ..  +.+.     ..+...+..++|+|++++++...+     ..|.+||    
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPA--YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHH--HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCC--ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence            222221      1267788988763  10  1221     123446889999999877655322     1488899    


Q ss_pred             ccCCc
Q psy12788        196 LHRNL  200 (254)
Q Consensus       196 l~~~~  200 (254)
                      +.+++
T Consensus       289 ~~~g~  293 (719)
T 1z68_A          289 WQTWD  293 (719)
T ss_dssp             SSSEE
T ss_pred             CCCCc
Confidence            77664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.36  E-value=8.7e-11  Score=102.85  Aligned_cols=115  Identities=8%  Similarity=0.057  Sum_probs=76.2

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCE--EEEEe-----------
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQA--VVVGS-----------   70 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~--la~gs-----------   70 (254)
                      ..+..++|+|+  +|++++.+ +|.+|+ . +|++.+.......    ..+..++|+|||++  +++++           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~----g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG----GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC----SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC----CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            46888999984  68888888 999999 4 7766543332211    22456899999994  55553           


Q ss_pred             --CCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEeee
Q psy12788         71 --YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFESV  127 (254)
Q Consensus        71 --~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~  127 (254)
                        .++ +++|+++...............+...+.+++|||||++|++++. ++.|++||..
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence              454 88999864322111100000123357899999999999988764 6789999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.34  E-value=5e-11  Score=110.54  Aligned_cols=180  Identities=12%  Similarity=0.019  Sum_probs=112.1

Q ss_pred             ccccCC-CCCEEEEecCCe-EEEEeC---CCcEEEEe--C--CCCEEEEeeecCCCCCCCCEEEEEECCCCC--EEEEEe
Q psy12788          2 RVVQHP-VPPYALSWPAGY-ILAAGS---DRIVTIYE--S--DGRVHRIFDYTAPHYKEREFTVACSSPSGQ--AVVVGS   70 (254)
Q Consensus         2 ~l~~h~-~~v~~l~w~~~~-l~s~s~---D~~i~vWd--~--~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~--~la~gs   70 (254)
                      ++..|. ..+..++|+|+. +++++.   +...++|.  .  .|... .+.     .. ..+...+|+|||+  ++++++
T Consensus        58 ~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~-----~~-~~~~~~~~s~dg~~~~~~s~~  130 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE-----AV-KPMRILSGVDTGEAVVFTGAT  130 (582)
T ss_dssp             ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT-----TS-CSBEEEEEEECSSCEEEEEEC
T ss_pred             eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-ccc-----CC-CCceeeeeCCCCCeEEEEecC
Confidence            355566 578999999974 555554   45566764  5  56544 221     11 2344667888875  566666


Q ss_pred             CCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEe-------------
Q psy12788         71 YDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIW-------------  133 (254)
Q Consensus        71 ~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~-------------  133 (254)
                      .+++.+||+.....  ..  .  ..+..  .+++|||||++||+++.+    +.|++||+.+++...             
T Consensus       131 ~~~~~l~d~~~g~~--~~--l--~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~  202 (582)
T 3o4h_A          131 EDRVALYALDGGGL--RE--L--ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI  202 (582)
T ss_dssp             SSCEEEEEEETTEE--EE--E--EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEE
T ss_pred             CCCceEEEccCCcE--EE--e--ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceE
Confidence            77777999764321  11  1  11112  789999999999988877    789999976543221             


Q ss_pred             --eceeEEEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEE--------EecCcEEE-EEECCCcEEEEeccCCc
Q psy12788        134 --KGKFEMIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVA--------IMGNDRYL-VARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 --~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~--------~~~~~~~~-v~~~d~~i~i~dl~~~~  200 (254)
                        ++++......++  ++.+||+.++.   .. +...+...+..++        |+|++.++ +++.++++.||++  |+
T Consensus       203 SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~  276 (582)
T 3o4h_A          203 SPGMKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE  276 (582)
T ss_dssp             CTTSCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE
T ss_pred             CCCCCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC
Confidence              112222222333  67788887773   33 3334445677777        99988544 4667889999999  65


Q ss_pred             ee
Q psy12788        201 LS  202 (254)
Q Consensus       201 ~~  202 (254)
                      +.
T Consensus       277 ~~  278 (582)
T 3o4h_A          277 RV  278 (582)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.33  E-value=2.9e-10  Score=99.44  Aligned_cols=169  Identities=11%  Similarity=0.049  Sum_probs=104.1

Q ss_pred             CCCCCEEEEecCC--eEEEEeC-CCcEEEEe-C-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEE
Q psy12788          6 HPVPPYALSWPAG--YILAAGS-DRIVTIYE-S-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFA   78 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~-D~~i~vWd-~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d   78 (254)
                      +...+..++|+|+  +|+++.. +++|++|| . +|+....-..... .+...+..++|+|||+++++++. + .+.+|+
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            4567899999985  5666553 67899999 5 6765322111111 13456899999999999888775 3 488999


Q ss_pred             ecCCCcceee--cCceecCC----CC-------cEeEEE-EecCCCeEEEeecCC------cEEEEeee-eeeeEeecee
Q psy12788         79 WSPSKSVWEE--QPNKTIPN----LY-------TISALS-WKRDGSRIACGGLCG------SVELFESV-LKRTIWKGKF  137 (254)
Q Consensus        79 ~~~~~~~~~~--~~~~~~~~----~~-------~i~~l~-~spdG~~la~g~~dg------~v~iwd~~-~~~~~~~~~~  137 (254)
                      ++...+....  ......+.    ..       .+..++ |||||++|++++.+.      .|.+|++. .++...    
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~----  297 (365)
T 1jof_A          222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK----  297 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE----
T ss_pred             EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE----
Confidence            8653332210  00111111    11       488999 999999998877543      78899863 222110    


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEec---CcEEE-EEEC-CCcEEEEeccCCce
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG---NDRYL-VART-PDTLLLGDLHRNLL  201 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~---~~~~~-v~~~-d~~i~i~dl~~~~~  201 (254)
                                            ...+....+..+..++|+|   +++++ +++. ++++.||++....+
T Consensus       298 ----------------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          298 ----------------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             ----------------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             ----------------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence                                  0000111233456788998   67655 4554 47999999877643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.31  E-value=1.8e-09  Score=90.66  Aligned_cols=182  Identities=14%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             CCCCCEEEEec-C-CeEEEEeC--CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEec
Q psy12788          6 HPVPPYALSWP-A-GYILAAGS--DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWS   80 (254)
Q Consensus         6 h~~~v~~l~w~-~-~~l~s~s~--D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~   80 (254)
                      |...|..++++ + ..|+.+..  ++.|++||.+|+.+..+..    .+...+.+++++|+|+++++...+ ++++|+.+
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence            44578899993 4 34554443  7899999988888766631    233568999999999988877655 48788732


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e--e----ceeEEEEec----------
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W--K----GKFEMIYVS----------  143 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~--~----~~~~~~~~~----------  143 (254)
                        ......  .....+...+..|+++|||+++++...++.|++||...+... .  .    ....+.+..          
T Consensus       151 --g~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          151 --GNVLHK--FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             --SCEEEE--EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             --CCEEEE--eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence              221111  001123346899999999998888888999999996322111 0  1    112222222          


Q ss_pred             CC-eEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        144 PS-QVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       144 ~~-~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                      ++ .+.+++.. +.  ....+.... ...+..+++++++++++++.+++|++|++..
T Consensus       227 ~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          227 NNFNLTIFTQD-GQ--LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             SSCEEEEECTT-SC--EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCEEEEEECCC-CC--EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            32 56666643 21  222222222 2247789999988888888889999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.30  E-value=1.5e-09  Score=94.21  Aligned_cols=117  Identities=13%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             CCCCCEEEEecCC--eEEEEeCC----CcEEEEe--CC-CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-E
Q psy12788          6 HPVPPYALSWPAG--YILAAGSD----RIVTIYE--SD-GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-I   74 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D----~~i~vWd--~~-g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i   74 (254)
                      |...|..++|+|+  .|++++.+    +.|.+|+  .. |+.. .+... . .+......+++  +|++|++++. ++ +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-~~~~~-~-~~~~~p~~~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-LLNTQ-K-TMGADPCYLTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE-EEEEE-E-CSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE-EeeEe-c-cCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence            4567788999984  68888876    7999997  33 5432 22111 1 23346777888  8988888774 44 8


Q ss_pred             EEEEecCCCcceeecCceecC---------CCCcEeEEEEecCCCeEEEeec-CCcEEEEeee
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIP---------NLYTISALSWKRDGSRIACGGL-CGSVELFESV  127 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~---------~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~  127 (254)
                      .+|++................         ....+.+++|+|||++|++++. ++.|.+|++.
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence            999986433211110000000         1224688999999997766664 7899999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.29  E-value=9.7e-09  Score=86.11  Aligned_cols=191  Identities=15%  Similarity=0.104  Sum_probs=118.3

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecC--CCCCCCCEEEEEE-CCCCCEEEEEeC-C-cEEEE
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTA--PHYKEREFTVACS-SPSGQAVVVGSY-D-NIKLF   77 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~--~~~~~~~v~~~a~-sPdg~~la~gs~-d-~i~l~   77 (254)
                      +|-..|.+++++++  .+++.+.++.|++||.+|+.+..+....  . ++...+..+++ +++|+++++... + .+++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCc-ccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            45567899999873  5666678899999997788776663211  1 23456899999 688888777642 4 57788


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e------eceeEEEEec-------
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W------KGKFEMIYVS-------  143 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~------~~~~~~~~~~-------  143 (254)
                      +.  ......   .....+...+..++++|+|+++++...++.|.+||....... .      .....+.+..       
T Consensus       106 d~--~g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          106 NQ--YGQFVR---KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             CT--TSCEEE---EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             CC--CCcEEE---EecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            72  122111   111123346899999999998888888899999995321111 0      0112223222       


Q ss_pred             ---CCeEEEEeCCCCCceeeEEEEecCC--CceeEEEEecCcEEEEEEC-CC-cEEEEeccCCceeeEe
Q psy12788        144 ---PSQVLVKPLSGESKGRGVILKSQYG--YEITDVAIMGNDRYLVART-PD-TLLLGDLHRNLLSEVL  205 (254)
Q Consensus       144 ---~~~~~v~~~~~~~~~~~~~l~s~~~--~~i~~i~~~~~~~~~v~~~-d~-~i~i~dl~~~~~~~~~  205 (254)
                         ++.+.+++....    .+......+  ..+..|+++++++++++.. ++ .|.+||.....+..+.
T Consensus       181 ~~~~~~i~~~~~~g~----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~  245 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE  245 (286)
T ss_dssp             EGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             ECCCCEEEEEcCCCC----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence               345666665322    121112222  3678999999888777665 54 8999996554444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.27  E-value=2.3e-08  Score=86.22  Aligned_cols=219  Identities=8%  Similarity=0.067  Sum_probs=126.8

Q ss_pred             CCCEEEEecCC--eEEEEeCC------------------------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEEC
Q psy12788          8 VPPYALSWPAG--YILAAGSD------------------------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSS   60 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D------------------------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~s   60 (254)
                      ..|.+|+++++  .+++.+.+                        ++|.+|| .+|+.++.+.   . ++-.....++++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~-~~~~~p~gia~d   99 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---K-NLFYLPHGLSID   99 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---T-TTCSSEEEEEEC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---C-CccCCceEEEEC
Confidence            46889999984  56666666                        3799999 5688876553   1 334578999999


Q ss_pred             CCCCEEEEEeCC-cEEEEEecCCC-cceeecCcee----cCCCCcEeEEEEec-CCCeEEEee-cCCcEEEEeeeeeeeE
Q psy12788         61 PSGQAVVVGSYD-NIKLFAWSPSK-SVWEEQPNKT----IPNLYTISALSWKR-DGSRIACGG-LCGSVELFESVLKRTI  132 (254)
Q Consensus        61 Pdg~~la~gs~d-~i~l~d~~~~~-~~~~~~~~~~----~~~~~~i~~l~~sp-dG~~la~g~-~dg~v~iwd~~~~~~~  132 (254)
                      |+|+++++...+ ++++|+.+... ..........    ..+......|+++| +|+++++.+ .++.|++||.. ++..
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~  178 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFV  178 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEE
Confidence            999988887766 48888853221 1111100000    12234688999999 888888886 69999999942 2221


Q ss_pred             ee----------------ceeEEEEecC-C----------eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEE
Q psy12788        133 WK----------------GKFEMIYVSP-S----------QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLV  184 (254)
Q Consensus       133 ~~----------------~~~~~~~~~~-~----------~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v  184 (254)
                      ..                .+.-+.+..+ +          .+.+++..++.  ....+. ...+..+..++++| +..++
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCcceeeecC-CEEEE
Confidence            10                0223344333 3          45555655442  111111 12345677888888 43333


Q ss_pred             E--------ECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEeecCe
Q psy12788        185 A--------RTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYGNNE  240 (254)
Q Consensus       185 ~--------~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~  240 (254)
                      .        ..+.++++||+.++++...--. ..+.  +   .....+++++ |.+.+.+.+.+.
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-~~~~--~---~~p~~ia~~~dG~lyvad~~~~~  314 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-VRKH--F---DMPHDIVASEDGTVYIGDAHTNT  314 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECC-SSSC--C---SSEEEEEECTTSEEEEEESSSCC
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-CCCc--c---CCeeEEEECCCCCEEEEECCCCE
Confidence            2        1234899999998887544211 1111  1   1123455655 555555555544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.25  E-value=5.2e-10  Score=104.97  Aligned_cols=192  Identities=10%  Similarity=0.033  Sum_probs=117.4

Q ss_pred             cccCCCCCEEEEecCCe--EEEE--eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEE---------EEEEC--CCCCE-
Q psy12788          3 VVQHPVPPYALSWPAGY--ILAA--GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFT---------VACSS--PSGQA-   65 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~--l~s~--s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~---------~~a~s--Pdg~~-   65 (254)
                      +.+|...+..++|+++.  +++.  +.|++.+||. ..+...+.+.     .+...+.         ..+|+  |||+. 
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL-----PAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS-----CTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC-----CCCccccccccccCCccceeeeecCCCeE
Confidence            55788999999999974  4454  4588899998 5444443332     3444444         55555  99998 


Q ss_pred             EEEEeCCcEEEEEecCC--C-cceeecCceecC---CCCcEeEEEEecCCCeEEEeecC----------CcEEEEeeee-
Q psy12788         66 VVVGSYDNIKLFAWSPS--K-SVWEEQPNKTIP---NLYTISALSWKRDGSRIACGGLC----------GSVELFESVL-  128 (254)
Q Consensus        66 la~gs~d~i~l~d~~~~--~-~~~~~~~~~~~~---~~~~i~~l~~spdG~~la~g~~d----------g~v~iwd~~~-  128 (254)
                      ||..+....+||.++..  . +....  .....   +...+.+++|||||++||+++.+          ..|.+||+.. 
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence            88776545557776643  1 21111  11111   34578899999999999999887          5899999866 


Q ss_pred             -----eee--Ee-e-------------ceeEEEEecC--------CeEEEEeCC-CCCceeeEEEEecCCCceeEEEEec
Q psy12788        129 -----KRT--IW-K-------------GKFEMIYVSP--------SQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMG  178 (254)
Q Consensus       129 -----~~~--~~-~-------------~~~~~~~~~~--------~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~  178 (254)
                           ++.  +. .             +++......+        .++.++|+. ++.......+...+...+..+.|+|
T Consensus       172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence                 422  11 1             1111111111        256777776 3410022333333456788999999


Q ss_pred             CcEEEEEE-CCC--cEEEEeccCCce
Q psy12788        179 NDRYLVAR-TPD--TLLLGDLHRNLL  201 (254)
Q Consensus       179 ~~~~~v~~-~d~--~i~i~dl~~~~~  201 (254)
                      +++++..+ .++  .|.+||+.+++.
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCce
Confidence            88755544 455  567778767654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.25  E-value=1.2e-09  Score=92.50  Aligned_cols=168  Identities=11%  Similarity=0.134  Sum_probs=114.5

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      +.|++++.|+.|++|| .+|+.+.++.     .+. ..+.+++++|+|+++++ ..++++.||. ..+..|+..    .+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~pdG~ilvs-~~~~V~~~d~-~G~~~W~~~----~~   74 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYP-----LEKGWECNSVAATKAGEILFS-YSKGAKMITR-DGRELWNIA----AP   74 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEE-----CCTTCCCCEEEECTTSCEEEE-CBSEEEEECT-TSCEEEEEE----CC
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeC-----CCccCCCcCeEECCCCCEEEe-CCCCEEEECC-CCCEEEEEc----CC
Confidence            3688999999999999 5999987775     222 36789999999999983 3446888886 455566541    22


Q ss_pred             CCCcEeEEEEecCCCeEEEeec-CCcEEEEeeeeeeeEe----------------------eceeEEEEecCCeEEEEeC
Q psy12788         96 NLYTISALSWKRDGSRIACGGL-CGSVELFESVLKRTIW----------------------KGKFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~~~~~~~~----------------------~~~~~~~~~~~~~~~v~~~  152 (254)
                      ....+.++.+.|||+++++.+. ++.+..+|. .++.++                      ++.+.++...++.+.++|.
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence            2346889999999999999887 677766664 232221                      1233444445667788887


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCcee
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLS  202 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~  202 (254)
                      . |+    .+.+-..+.....+.+.+++.++++.. ++.+..+|..+|++.
T Consensus       154 ~-G~----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          154 N-GQ----LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             T-SC----EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             C-CC----EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            6 63    222212234566777888787777665 447889999988753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=1e-08  Score=95.54  Aligned_cols=216  Identities=12%  Similarity=0.130  Sum_probs=129.4

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      .+++...|++|.++| .+++.+.++..      ...+..++|||||+++.+++.|+ +.+||.......  .  ...+..
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~--v~~i~~  238 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--T--VAEIKI  238 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--E--EEEEEC
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeC------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--E--eEEEec
Confidence            577778899999999 77888877752      23467899999999999888874 889996311111  1  122333


Q ss_pred             CCcEeEEEEe----cCCCeEEEeecC-CcEEEEeeeeeeeEee----c------------ee-EEEEe-----------c
Q psy12788         97 LYTISALSWK----RDGSRIACGGLC-GSVELFESVLKRTIWK----G------------KF-EMIYV-----------S  143 (254)
Q Consensus        97 ~~~i~~l~~s----pdG~~la~g~~d-g~v~iwd~~~~~~~~~----~------------~~-~~~~~-----------~  143 (254)
                      ......++||    |||+++++++.. +.|.++|..+.+.+..    +            +. .+..+           .
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            3346789999    799999988864 8999999755433211    0            01 11111           1


Q ss_pred             CCeEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEE-EEE-CCCcEEEEeccCCceeeE-e-----CCCCCCcee
Q psy12788        144 PSQVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYL-VAR-TPDTLLLGDLHRNLLSEV-L-----WPDSGRNEK  214 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~dl~~~~~~~~-~-----~~~~~g~~~  214 (254)
                      .+++.+.|..+..   ...+. -..+.....+.|+++++|+ ++. .++++.++|+.++++... .     ++ +...-.
T Consensus       319 ~g~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph-pg~g~~  394 (567)
T 1qks_A          319 TGKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGAN  394 (567)
T ss_dssp             TTEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEE
T ss_pred             CCeEEEEecCCCc---cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC-Ccccee
Confidence            2455555554432   11111 1223456678899988754 554 478999999999986422 2     12 211122


Q ss_pred             EEeeCceEEEEEe---CCeeEEEEeec-------CeeeeeeecC
Q psy12788        215 FYFDNVTVCLVFN---AGELSIIEYGN-------NEILTCVRIP  248 (254)
Q Consensus       215 ~~~~~~~~~~~~~---~g~~~~~~~~~-------~~~~~~~~~~  248 (254)
                      |.-.+.....+-+   .+.+.++++..       -..+.++.+.
T Consensus       395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence            3222112222222   25788888765       3466666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.22  E-value=2.5e-10  Score=107.09  Aligned_cols=189  Identities=14%  Similarity=0.081  Sum_probs=108.6

Q ss_pred             CCCCCEEEEecCC--eEEEEeCC----------CcEEEEeCCC------CEEEEeeecCCCCCCCCEEEEEECCCCCEEE
Q psy12788          6 HPVPPYALSWPAG--YILAAGSD----------RIVTIYESDG------RVHRIFDYTAPHYKEREFTVACSSPSGQAVV   67 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D----------~~i~vWd~~g------~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la   67 (254)
                      |...+..++|+|+  .|+.++.|          .+|++||..+      ...+.+.   . .+...+..++|||||++||
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS---D-DAHRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS---C-SCSSEECCCEECTTSSEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE---e-cCCCcccCceECCCCCEEE
Confidence            5667889999985  68888877          5899999443      3232221   0 1235678899999999999


Q ss_pred             EEeCC---------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC--cEEEEeeeeeeeEe---
Q psy12788         68 VGSYD---------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG--SVELFESVLKRTIW---  133 (254)
Q Consensus        68 ~gs~d---------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg--~v~iwd~~~~~~~~---  133 (254)
                      .++.+         .+++||+... +.+.........+...+..++|||||+++++++.++  .|.+||...++...   
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~-g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTED-GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTT-SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCC-CcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence            87643         2677776521 101010011112346789999999999888888888  45555543332211   


Q ss_pred             ---------------------eceeEEEEecCCeEEEE--eCCCCCceeeEEEEecCCCceeEE-EEecCcEEEEEEC-C
Q psy12788        134 ---------------------KGKFEMIYVSPSQVLVK--PLSGESKGRGVILKSQYGYEITDV-AIMGNDRYLVART-P  188 (254)
Q Consensus       134 ---------------------~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~~~~~i~~i-~~~~~~~~~v~~~-d  188 (254)
                                           ++.+..+... +...+|  |+.++   ....+ ..+...+..+ +++++..++++++ +
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~---~~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~  357 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG---ELVDA-AGPWTEWAATLTVSGTRAVGVAASPR  357 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT---EEEEC-CSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC---cEEEe-cCCCCeEEEEEecCCCEEEEEEcCCC
Confidence                                 1111222222 344455  54444   22222 2233456777 6665444444444 3


Q ss_pred             C--cEEEEeccCCceeeE
Q psy12788        189 D--TLLLGDLHRNLLSEV  204 (254)
Q Consensus       189 ~--~i~i~dl~~~~~~~~  204 (254)
                      .  .+.++|+.+++...+
T Consensus       358 ~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          358 TAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EEEEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCceEEe
Confidence            3  456668888876544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=1.4e-08  Score=85.78  Aligned_cols=186  Identities=10%  Similarity=0.000  Sum_probs=112.7

Q ss_pred             ccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788          4 VQHPVPPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~   79 (254)
                      ..+...+.+++|++  + .++++..++.|..||..+. .+.+.     .+...+.+++++|+|+++++...+ ++.+||.
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~-----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM-----HPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE-----SSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE-----CCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            34555678999987  3 5778888999999996655 55554     344678999999999988776654 5778875


Q ss_pred             cCCCcceeecCceecC--CCCcEeEEEEecCCCeEEE----eec-------------CCcEEEEeeeeeeeEe--e---c
Q psy12788         80 SPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIAC----GGL-------------CGSVELFESVLKRTIW--K---G  135 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~----g~~-------------dg~v~iwd~~~~~~~~--~---~  135 (254)
                      ....  .... .....  ....+.+++++|||+++++    |+.             .+.|..+|.. ++...  .   .
T Consensus        98 ~~g~--~~~~-~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           98 PGGE--WESI-ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             TTCC--EEEE-ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             CCCc--EEEE-eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence            3322  2110 00011  1235678999999999887    431             3455555543 22111  0   0


Q ss_pred             eeEEEEe----------cCCeEEEEeCC-CCCc-eeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        136 KFEMIYV----------SPSQVLVKPLS-GESK-GRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       136 ~~~~~~~----------~~~~~~v~~~~-~~~~-~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ...+.+.          ..+.+.++++. ++.. .....+ ......+..++++++++++++. ++.|.+||.....+
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~  249 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDEL  249 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEE
Confidence            1112222          23456666665 3310 011222 2233456789999988888877 88999999874333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.20  E-value=6.1e-10  Score=97.18  Aligned_cols=188  Identities=9%  Similarity=-0.031  Sum_probs=106.6

Q ss_pred             ccccCCCCCEE-----EEecCC--eEEEEeC-CCc--EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788          2 RVVQHPVPPYA-----LSWPAG--YILAAGS-DRI--VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS   70 (254)
Q Consensus         2 ~l~~h~~~v~~-----l~w~~~--~l~s~s~-D~~--i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs   70 (254)
                      +|..|...+..     .+|+|+  .|+.++. |+.  |.+|| ..|+..+..    . ++...+..++|+|||+.|+.++
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt----~-~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT----E-GRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC----C-SSCBCSSSCEECTTSSEEEEEE
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee----e-CCCCCccceEEcCCCCEEEEEe
Confidence            34555554444     789984  6887777 664  77888 455544322    1 3444445678999999999999


Q ss_pred             CCc-EEEEEecCCCcceeecCceecCCCCcEeEEE--EecCCCeEEEe----------------------ecCCcEEEEe
Q psy12788         71 YDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS--WKRDGSRIACG----------------------GLCGSVELFE  125 (254)
Q Consensus        71 ~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~--~spdG~~la~g----------------------~~dg~v~iwd  125 (254)
                      .++ +++||........    ... .+...+....  ++|||++++..                      ..+..|.+||
T Consensus       100 ~~~~l~~~d~~~g~~~~----~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENV----VYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             TTTEEEEEETTTCCEEE----EEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             CCCeEEEEECCCCccee----eee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            874 8888865433211    111 1222333333  49999998843                      2346788898


Q ss_pred             eeeeeeEe--e-c--eeEEEEec-CCe----------------EEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcEE
Q psy12788        126 SVLKRTIW--K-G--KFEMIYVS-PSQ----------------VLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDRY  182 (254)
Q Consensus       126 ~~~~~~~~--~-~--~~~~~~~~-~~~----------------~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~~  182 (254)
                      +.+++...  . .  .....+++ +++                +.++++..+   ....+..... ..+....|+|+++.
T Consensus       175 ~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          175 LKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---NMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---CCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             CCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---ceEEeeeCCCCcccccceECCCCCE
Confidence            76543221  1 1  11233444 333                333343333   1222222111 24778899998874


Q ss_pred             E-EEEC--CC---cEEEEeccCCcee
Q psy12788        183 L-VART--PD---TLLLGDLHRNLLS  202 (254)
Q Consensus       183 ~-v~~~--d~---~i~i~dl~~~~~~  202 (254)
                      + ..+.  ..   .|++||+.+++..
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceE
Confidence            4 3222  22   3999999998743

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.20  E-value=5.7e-09  Score=99.27  Aligned_cols=187  Identities=10%  Similarity=0.078  Sum_probs=109.5

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCC-----cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c---
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDR-----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N---   73 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~-----~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~---   73 (254)
                      |...+..++|+|+  .|+.++.++     +|++|| .+|+.+....     .+ ..+..++|+|||+.|+.++.+ .   
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-----~~-~~~~~~~wspDg~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----ER-VKFSCMAWTHDGKGMFYNAYPQQDGK  196 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----EE-ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-----cC-cccceEEEEeCCCEEEEEEECCcccc
Confidence            4445778999985  566554433     899999 6666554221     11 125679999999999988765 3   


Q ss_pred             -------------EEEEEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeec-----CCcEEEEeeee------
Q psy12788         74 -------------IKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGL-----CGSVELFESVL------  128 (254)
Q Consensus        74 -------------i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~-----dg~v~iwd~~~------  128 (254)
                                   +++|++......-..  .... .+...+..++|||||++|+.++.     +..|.+||+..      
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~--v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDIL--CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccCCCCEEEEEECCCCcccceE--EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                         666665332211000  1111 12345789999999999998876     56899999865      


Q ss_pred             e--ee--Eee---ceeE--------EEEec-----CCeEEEEeCCCCCceeeEEEEecCC-CceeEEEEecCcEEEE-EE
Q psy12788        129 K--RT--IWK---GKFE--------MIYVS-----PSQVLVKPLSGESKGRGVILKSQYG-YEITDVAIMGNDRYLV-AR  186 (254)
Q Consensus       129 ~--~~--~~~---~~~~--------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~-~~i~~i~~~~~~~~~v-~~  186 (254)
                      +  ..  +..   ..+.        +.+.+     ..++.++++.++.......+..... ..+..+.+++++.+++ ..
T Consensus       275 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          275 GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            3  11  111   0010        11111     1257778887652101133433333 3678899986566555 44


Q ss_pred             CCC--cEEEEeccCCc
Q psy12788        187 TPD--TLLLGDLHRNL  200 (254)
Q Consensus       187 ~d~--~i~i~dl~~~~  200 (254)
                      .++  .|.++|+.+|+
T Consensus       355 ~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGA  370 (710)
T ss_dssp             ETTEEEEEEEETTTCC
T ss_pred             ECCEEEEEEEECCCCC
Confidence            455  46677886665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.19  E-value=2e-09  Score=102.23  Aligned_cols=184  Identities=12%  Similarity=0.059  Sum_probs=106.6

Q ss_pred             cCCCCCEEEEecCC--eEE-----EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c--
Q psy12788          5 QHPVPPYALSWPAG--YIL-----AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N--   73 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~-----s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~--   73 (254)
                      +|...+..++|+|+  +||     +|+.+.+|++|| .+|+.+. . .... .  .....++|+|||+.|+.++.| .  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~-~~~~-~--~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-V-DVIE-G--GKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-S-CCBS-C--CTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-C-cccC-c--ccccceEEecCCCEEEEEEecCCCC
Confidence            45557889999985  566     455567899999 5665430 0 0111 1  112678999999999998875 2  


Q ss_pred             -----------EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeeeee--Eee-
Q psy12788         74 -----------IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLKRT--IWK-  134 (254)
Q Consensus        74 -----------i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~~~--~~~-  134 (254)
                                 +++|++......-..  ... ..+...+.+++|||||++|+.++.++    .|.++|...++.  +.. 
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                       677775432211000  111 12234688999999999999988776    666666432211  110 


Q ss_pred             --ceeE-------EEEec-----CCeEEEEeCCCCCceeeEEEEecC-CCceeEEEEecCcEE-EEEECCCcEEEEec
Q psy12788        135 --GKFE-------MIYVS-----PSQVLVKPLSGESKGRGVILKSQY-GYEITDVAIMGNDRY-LVARTPDTLLLGDL  196 (254)
Q Consensus       135 --~~~~-------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~-~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl  196 (254)
                        ..+.       +.+.+     ..++.++++.++.......+.... +..+..++++ ++.+ ++...++..+||.+
T Consensus       271 ~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence              0111       11212     346777887665210013333333 4468888988 4554 44566777777643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.17  E-value=3.4e-09  Score=92.40  Aligned_cols=186  Identities=6%  Similarity=-0.042  Sum_probs=107.4

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEE--EECCCCCEEEEEe----------
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVA--CSSPSGQAVVVGS----------   70 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~--a~sPdg~~la~gs----------   70 (254)
                      |...+..++|+|+  .|+.++.|+.+++|| .+|+....+.     .+...+...  .++|||++++...          
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-----VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-----chhhcccccceeECCCCCeeccccccCccccccc
Confidence            3344456789984  699999999999999 6676554443     233334333  3599999987421          


Q ss_pred             ------------CC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecC------CcEEEEeeeeee
Q psy12788         71 ------------YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLC------GSVELFESVLKR  130 (254)
Q Consensus        71 ------------~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~d------g~v~iwd~~~~~  130 (254)
                                  .+ .+.+||...  +...    ....+...+..++||| ||++||....+      ..|.++|...+.
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~--g~~~----~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKT--GEST----VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTT--CCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccchhhhhhccCCcceEEEEECCC--CceE----EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                        22 255666433  2211    1123345689999999 99999988764      367777753322


Q ss_pred             e--Eeec-----eeEEEEecCC---------------eEEEEeCCCCCceeeEEEEecCCC-----ceeEEEEecCcEEE
Q psy12788        131 T--IWKG-----KFEMIYVSPS---------------QVLVKPLSGESKGRGVILKSQYGY-----EITDVAIMGNDRYL  183 (254)
Q Consensus       131 ~--~~~~-----~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~~~~-----~i~~i~~~~~~~~~  183 (254)
                      .  +...     .....+++++               ++.++|+.++.   ...+....+.     ....+.|+|+++++
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~~~~~~~spdg~~l  304 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE---NRQLTSMPACSHLMSNYDGSLMVGDGSDA  304 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC---EEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc---eEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence            1  1110     1112232222               27778887773   3333222220     02234688888755


Q ss_pred             EE----------ECCCcEEEEeccCCceeeEe
Q psy12788        184 VA----------RTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       184 v~----------~~d~~i~i~dl~~~~~~~~~  205 (254)
                      +.          ..+..|++||+.++++..+.
T Consensus       305 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          305 PVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA  336 (388)
T ss_dssp             ------------CCCCEEEEEETTTTEEEEEE
T ss_pred             eeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence            43          33558999999998765443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.15  E-value=1.7e-08  Score=87.02  Aligned_cols=186  Identities=14%  Similarity=0.098  Sum_probs=117.9

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCC--EEEEeeecC-----CCCCCCCEEEEEECC-CCCEEEEEe-CC-cE
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGR--VHRIFDYTA-----PHYKEREFTVACSSP-SGQAVVVGS-YD-NI   74 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~--~~~~~~~~~-----~~~~~~~v~~~a~sP-dg~~la~gs-~d-~i   74 (254)
                      -..|..++++++  .+++.+.+++|++||.+|+  .+..+....     . ++......++|+| +|+++++.+ .+ +|
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~-~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ-NHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST-TCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc-cccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            356889999873  6777777899999997776  555542100     1 2334689999999 899888876 35 58


Q ss_pred             EEEEecCCCcceeecCcee------cCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEee--------ceeEE
Q psy12788         75 KLFAWSPSKSVWEEQPNKT------IPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIWK--------GKFEM  139 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~------~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~~--------~~~~~  139 (254)
                      ++|+.+  ...........      ..+......|+++|+ |+++++...++.|++||..+++.+..        ..+.+
T Consensus       169 ~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          169 VQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            888732  22111100000      011234889999999 78888888899999999865544321        12222


Q ss_pred             EEec----------------CCeEEEEeCCCCCceeeEEEE---ecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccC
Q psy12788        140 IYVS----------------PSQVLVKPLSGESKGRGVILK---SQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHR  198 (254)
Q Consensus       140 ~~~~----------------~~~~~v~~~~~~~~~~~~~l~---s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~  198 (254)
                      .+.+                ...+.+++..++.   .+...   .........|++++++.++++. .+++|.+|++..
T Consensus       247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            2222                2267788887773   22221   1223458899999988766654 477999998754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.07  E-value=4.8e-08  Score=82.42  Aligned_cols=186  Identities=11%  Similarity=0.010  Sum_probs=109.7

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE----EeC------
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV----GSY------   71 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~----gs~------   71 (254)
                      .+...|.+++++++  ++++...++.|.+|| .+|+.......... .....++.++++|+|+++++    |+.      
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~  144 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY  144 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence            45667899999874  455555568999999 47875433211111 11234678999999999887    331      


Q ss_pred             ------CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee-eeee-----Eee----c
Q psy12788         72 ------DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV-LKRT-----IWK----G  135 (254)
Q Consensus        72 ------d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~-~~~~-----~~~----~  135 (254)
                            ..-+||.++.. +...    ....+......++|+|||++|++.+.++.|.+||.. .++.     ...    .
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~----~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          145 GGEMELPGRWVFRLAPD-GTLS----APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             CCCCCSSSCEEEEECTT-SCEE----EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             cccccCCCcEEEEECCC-CCEE----EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence                  12257777654 2211    112344567899999999999777788999999975 2222     110    0


Q ss_pred             eeEEEEec--------CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe-cCcEEEEEECCCcEEEEeccCCce
Q psy12788        136 KFEMIYVS--------PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM-GNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       136 ~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~-~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ...+.+..        .+.+.+++.. +   ..+........ +.+++|. ++++.+..++.+.+.-.++.++++
T Consensus       220 p~~i~~d~~G~l~v~~~~~v~~~~~~-g---~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASAGDGVHVLTPD-G---DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL  289 (296)
T ss_dssp             CCSEEEBTTSCEEEEETTEEEEECTT-S---CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred             CCeEEECCCCCEEEEcCCeEEEECCC-C---CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence            00111111        4566677765 3   22222222333 8889995 555555444455666667777665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.07  E-value=1.5e-08  Score=88.87  Aligned_cols=163  Identities=12%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------C-cEEEEEecCCCcceeecCce
Q psy12788         25 SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------D-NIKLFAWSPSKSVWEEQPNK   92 (254)
Q Consensus        25 ~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d-~i~l~d~~~~~~~~~~~~~~   92 (254)
                      .|++|.+|| .+++.+.++.     .+..+  .++|+|||+++.+++.          + .+.+||....+....    .
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~-----~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~----i   97 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVP-----TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE----I   97 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEE-----CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE----E
T ss_pred             ccCeEEEEECCCCeEEEEec-----CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE----E
Confidence            478999999 7888887665     23233  8999999999888752          3 488998543222111    1


Q ss_pred             ecC-----CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEee-----c-----------eeEEEEecCCeEEE
Q psy12788         93 TIP-----NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWK-----G-----------KFEMIYVSPSQVLV  149 (254)
Q Consensus        93 ~~~-----~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~-----~-----------~~~~~~~~~~~~~v  149 (254)
                      ...     +......++|||||++|++++.  ++.|.+||+.+++....     +           ...++...++++.+
T Consensus        98 ~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~  177 (361)
T 2oiz_A           98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLT  177 (361)
T ss_dssp             EECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred             EcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEE
Confidence            111     1124567999999999999885  57899999876654433     1           12244556667777


Q ss_pred             EeCCCCCceeeE-EEEe----cCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCc
Q psy12788        150 KPLSGESKGRGV-ILKS----QYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       150 ~~~~~~~~~~~~-~l~s----~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~  200 (254)
                      +++...+  ... ...+    ..+..-..+.+++++ .++..+.++.+.++|+..++
T Consensus       178 v~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~  232 (361)
T 2oiz_A          178 INLGEDG--KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDE  232 (361)
T ss_dssp             EEECTTS--SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred             EEECCCC--cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence            7765432  111 1110    001111112223333 44445567788899987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.04  E-value=2e-07  Score=79.68  Aligned_cols=194  Identities=11%  Similarity=0.042  Sum_probs=112.9

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----cE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----NI   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~i   74 (254)
                      +..+...+.+++|+++  .++++..++.|.+|| .+++....+.     .+...+.+++|+|+|+++++...+     ++
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-----CCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            3456667889999874  455778889999999 4555443221     244679999999999988877655     46


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeEe--e---ceeEEEEe-
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTIW--K---GKFEMIYV-  142 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~~--~---~~~~~~~~-  142 (254)
                      .+||.....  .... .........+.+++++|||+++++...      .+.|..+|...++...  .   ....+.+. 
T Consensus       115 ~~~d~~~~~--~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          115 FAATENGDN--LQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  191 (333)
T ss_dssp             EEECTTSCS--CEEE-ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             EEEeCCCCE--EEEE-EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECC
Confidence            677643322  1100 000112346899999999998876653      2456566543322111  0   11112222 


Q ss_pred             ----------cCCeEEEEeCCC-CCceee---EEEEecCC-CceeEEEEecCcEEEEEE-CCCcEEEEeccCCceeeE
Q psy12788        143 ----------SPSQVLVKPLSG-ESKGRG---VILKSQYG-YEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       143 ----------~~~~~~v~~~~~-~~~~~~---~~l~s~~~-~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~  204 (254)
                                ..+.+.++++.+ +.....   .......+ ..+..+++++++.++++. .++.|.+||.....+..+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEE
Confidence                      234566777753 210000   01111112 367789999888776665 467899999854444333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.03  E-value=1.6e-07  Score=80.48  Aligned_cols=173  Identities=8%  Similarity=0.037  Sum_probs=96.5

Q ss_pred             CCEEEEecCC--eEEEEeCC---C--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--------
Q psy12788          9 PPYALSWPAG--YILAAGSD---R--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--------   72 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D---~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--------   72 (254)
                      .+..++|+|+  .|+.++.+   +  .|.+|| ..|+..+...      +.. +..++|+|||+.|+.++.+        
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence            4678999985  67776654   2  377778 4454443222      223 8999999999999887632        


Q ss_pred             --------------------cEEEEEecCCCcce-eecCceecCCCCcEeEEEEecCCCeEEEeecCC-------cEEEE
Q psy12788         73 --------------------NIKLFAWSPSKSVW-EEQPNKTIPNLYTISALSWKRDGSRIACGGLCG-------SVELF  124 (254)
Q Consensus        73 --------------------~i~l~d~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg-------~v~iw  124 (254)
                                          .+.+|+..  .+.. ..  .. .  . .+..++||||| ++++++.++       ...||
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~--~~~~~~~--l~-~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~  203 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTE--SEEVIEE--FE-K--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY  203 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETT--TTEEEEE--EE-E--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred             EEcccceeecCcccccCccceEEEEECC--CCeEEee--ec-C--C-CcccccCCCCe-EEEEEecccccccccccccEE
Confidence                                24555543  3222 11  11 1  2 67889999999 777776542       34555


Q ss_pred             eeeeeee--EeeceeEEEEecCC------------------eEEEEeCCCCCceeeEEEEecCCCceeE-EEEecCcEEE
Q psy12788        125 ESVLKRT--IWKGKFEMIYVSPS------------------QVLVKPLSGESKGRGVILKSQYGYEITD-VAIMGNDRYL  183 (254)
Q Consensus       125 d~~~~~~--~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~~~~~i~~-i~~~~~~~~~  183 (254)
                      .+..++.  +.........++++                  ++.++|  ++   ....+...+...+.. +.|+ ++.++
T Consensus       204 ~~d~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg~~~  277 (347)
T 2gop_A          204 IWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GKVYF  277 (347)
T ss_dssp             EEETTEEEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TEEEE
T ss_pred             EeCCCceEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-CcEEE
Confidence            4323221  11110000112222                  344444  22   222222223446776 8888 77555


Q ss_pred             EEECCCcEEEEeccCCceeeE
Q psy12788        184 VARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       184 v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ++..++...|| +.+++...+
T Consensus       278 ~~~~~~~~~l~-~~~g~~~~~  297 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIKPI  297 (347)
T ss_dssp             EEEETTEEEEE-EESSSEEEE
T ss_pred             EEecCCcEEEE-EcCCceEEE
Confidence            66778899999 876665333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.02  E-value=1.9e-07  Score=77.09  Aligned_cols=212  Identities=9%  Similarity=0.018  Sum_probs=120.7

Q ss_pred             CCEEEEecCC--eEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788          9 PPYALSWPAG--YIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV   85 (254)
Q Consensus         9 ~v~~l~w~~~--~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~   85 (254)
                      .|.+++++++  .++ +.+.++.|.+||..+.....+.   . .+...+.+++++|+|+++++...+++.+||...  ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~--~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---F-NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS--NN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC---C-CSCCSCCCEEECTTCCEEEEETTTEEEEECTTC--SC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe---e-CCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC--ce
Confidence            7889999874  344 3367889999995443332221   1 233457889999999977766523577777432  21


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEec----------CCeEEE
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVS----------PSQVLV  149 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~----------~~~~~v  149 (254)
                      ...   ........+..++++|+|+++++...++.|.+||....+...      .....+.+..          .+.+.+
T Consensus        99 ~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B           99 QTV---LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             CEE---CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             Eee---eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence            111   111223568999999999988887788999999854322111      0111222222          235555


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  228 (254)
                      ++.....   ...........+..|++++++.++++.. ++.|.++|..+........   .+     + ....++++++
T Consensus       176 ~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~-~~p~~i~~~~  243 (270)
T 1rwi_B          176 LEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF---TG-----L-NTPLAVAVDS  243 (270)
T ss_dssp             ECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC---CS-----C-SCEEEEEECT
T ss_pred             EecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc---CC-----C-CCceeEEECC
Confidence            6655441   1111111114578899998877666654 6789999987665432211   11     0 1235666765


Q ss_pred             -CeeEEEEeecCee
Q psy12788        229 -GELSIIEYGNNEI  241 (254)
Q Consensus       229 -g~~~~~~~~~~~~  241 (254)
                       |.+-+.+.+++.+
T Consensus       244 ~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          244 DRTVYVADRGNDRV  257 (270)
T ss_dssp             TCCEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCEE
Confidence             6665566655544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.98  E-value=1.4e-07  Score=90.11  Aligned_cols=183  Identities=16%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             CCCEEEEecCC--eEEEEeCC-----CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc------
Q psy12788          8 VPPYALSWPAG--YILAAGSD-----RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN------   73 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D-----~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~------   73 (254)
                      ..+..++|+|+  +|+.++.+     .+|++|| .+|+.+....      +...+..++|+|| +.|+.++.+.      
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            35678899985  56665543     4699999 6676653211      1112357899999 9999887652      


Q ss_pred             ---------EEEEEecCCCcceeecCceec-CCCCcEeEEEEecCCCeEEEeecCC-----cEEEEeeeee--e-e--Ee
Q psy12788         74 ---------IKLFAWSPSKSVWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCG-----SVELFESVLK--R-T--IW  133 (254)
Q Consensus        74 ---------i~l~d~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg-----~v~iwd~~~~--~-~--~~  133 (254)
                               +++|++.  ...-+....... .+...+..+.|||||++|+..+.++     .|.+||+..+  + .  +.
T Consensus       236 ~~~~~~~~~v~~~~lg--t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLG--TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             ---CCCCCEEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cccCCCCCEEEEEECC--CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                     4455532  221100001111 1223588999999999999888655     7999998543  2 1  11


Q ss_pred             e---ceeE--------EEEec-----CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEE--
Q psy12788        134 K---GKFE--------MIYVS-----PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLG--  194 (254)
Q Consensus       134 ~---~~~~--------~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~--  194 (254)
                      .   ..+.        +.+.+     ..++.++++.++. .....+.......+..+.++. +.+ ++...++...||  
T Consensus       314 ~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~~-~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          314 PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIAG-NRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEEB-TEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEE
Confidence            1   1111        11111     2347777876631 023334444444577788884 444 445567766665  


Q ss_pred             eccCCce
Q psy12788        195 DLHRNLL  201 (254)
Q Consensus       195 dl~~~~~  201 (254)
                      |+..+..
T Consensus       392 ~~~g~~~  398 (741)
T 1yr2_A          392 DLDGKPA  398 (741)
T ss_dssp             ETTSCEE
T ss_pred             eCCCCce
Confidence            5444333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.98  E-value=5.5e-07  Score=77.62  Aligned_cols=179  Identities=8%  Similarity=-0.029  Sum_probs=108.0

Q ss_pred             CCEEEEecCCe-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788          9 PPYALSWPAGY-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV   85 (254)
Q Consensus         9 ~v~~l~w~~~~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~   85 (254)
                      .+..++++++. .++...+++|.+|| .+++.+.++.     . ......++++|+|+++++...+ .+.++|....+..
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-----~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-----G-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-----C-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-----C-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            45677777764 45555678999999 7888887774     1 2457899999999766665455 5888885432211


Q ss_pred             eeecCceecCC----CCcEeEEEEecCCCeEEEee--cCCcEEEEeeeeeeeEee---------------ceeEEEEecC
Q psy12788         86 WEEQPNKTIPN----LYTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWK---------------GKFEMIYVSP  144 (254)
Q Consensus        86 ~~~~~~~~~~~----~~~i~~l~~spdG~~la~g~--~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~  144 (254)
                      ..    .....    ......+++  ++..|.+++  .++.|.++|..+++....               +++.+.....
T Consensus       119 ~~----i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          119 GY----IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             EE----EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred             EE----EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence            11    11111    114556777  444555554  489999999865543221               1111111122


Q ss_pred             ----------CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        145 ----------SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       145 ----------~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                                +.+.++|..++.  ....+....+.....++++|+++++-.... ++.++|+.++++.
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~  257 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVP  257 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCC
T ss_pred             ccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCcee
Confidence                      467777877662  111222222456889999987765433333 8999999988753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=4.5e-08  Score=85.09  Aligned_cols=176  Identities=6%  Similarity=-0.079  Sum_probs=102.3

Q ss_pred             EEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEE-------------------EEECCCCCEEEEE
Q psy12788         12 ALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-------------------ACSSPSGQAVVVG   69 (254)
Q Consensus        12 ~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~-------------------~a~sPdg~~la~g   69 (254)
                      .+.|+|+  .|+.++.++.|++|| ..|+....+.     .+......                   ++|+|+|+.++..
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~  159 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-----VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFA  159 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-----cccccCCCCCEEEeccCCccccccccccccCCCCcceeee
Confidence            3778884  688889998999999 5565543332     12222222                   4578888877664


Q ss_pred             e-----CC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecC------CcEEEEeeeeeee--Eee
Q psy12788         70 S-----YD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLC------GSVELFESVLKRT--IWK  134 (254)
Q Consensus        70 s-----~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~d------g~v~iwd~~~~~~--~~~  134 (254)
                      .     .+ .+.+||...  +....    ...+...+..+.|+| ||++|+..+.+      ..|.+||...++.  +..
T Consensus       160 ~~~~~~~~~~l~~~d~~~--g~~~~----~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIET--GELEV----IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             HHHHTCCCEEEEEEETTT--CCEEE----EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred             eeccCCCcceEEEEECCC--CcEEe----eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence            3     23 366666443  22111    123345688999999 89988877654      3577787643321  111


Q ss_pred             -----ceeEEEEecC---------------CeEEEEeCCCCCceeeEEEEecCCCceeEEEEec-CcEEEEEE-------
Q psy12788        135 -----GKFEMIYVSP---------------SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMG-NDRYLVAR-------  186 (254)
Q Consensus       135 -----~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~-------  186 (254)
                           ....+.++++               ..+.++|+.++.   ...+....+  .. +.|++ ++++++..       
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECCS--EE-EEEECSSSSEEEEEECCC---
T ss_pred             cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCCC--CC-CCccCCCCceEEEecCCccee
Confidence                 0111222222               227777887763   333332222  23 88898 88766542       


Q ss_pred             ----------CCCcEEEEeccCCceeeE
Q psy12788        187 ----------TPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       187 ----------~d~~i~i~dl~~~~~~~~  204 (254)
                                .+..+.+||+.+++...+
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBCCEE
T ss_pred             eccccccccCCCCcEEEEecccCceEEc
Confidence                      236899999998875433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.90  E-value=4.4e-08  Score=87.05  Aligned_cols=105  Identities=9%  Similarity=0.012  Sum_probs=75.8

Q ss_pred             ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      ..++. |++|+|+.+.|+++ .++.|++|| .+-.....+.     .+...+.++.+.+..  +|+++.|+ +.+||+..
T Consensus        85 ~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~-----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~  155 (388)
T 1xip_A           85 KEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVT-----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT  155 (388)
T ss_dssp             EECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEE-----ECSSCEEEEEECSSE--EEEEETTSEEEEEETTT
T ss_pred             eeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccc-----eeecceeeEEecCCC--EEEEECCCCEEEEEccC
Confidence            45677 99999955677777 889999999 4433333332     344568888776643  88888886 88999653


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ...  .       .....|++++|||+|  ++.|..||++++|+...
T Consensus       156 ~~~--~-------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          156 KST--K-------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             CCE--E-------EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             Ccc--c-------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence            221  1       123479999999999  78899999999997643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.90  E-value=1.4e-06  Score=76.24  Aligned_cols=181  Identities=7%  Similarity=-0.024  Sum_probs=104.0

Q ss_pred             EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeecCCC-CCCCCEEEEEECCCCCEEEEEeC--C-cE
Q psy12788         12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYTAPH-YKEREFTVACSSPSGQAVVVGSY--D-NI   74 (254)
Q Consensus        12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~~~~-~~~~~v~~~a~sPdg~~la~gs~--d-~i   74 (254)
                      .++++|+  +|++++          .|++|.+|| .+++.++++...... .+......++|+|||++|.+++.  + .+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            8899985  577765          367899999 678888777532100 01234567899999999988763  3 48


Q ss_pred             EEEEecCCCcceeecCcee-cCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeeee-eeeE-------------------
Q psy12788         75 KLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDG-SRIACGGLCGSVELFESVL-KRTI-------------------  132 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~~-~~~~-------------------  132 (254)
                      .+||....+.      ... ++.. ....+.+.|+| ..+++.+.||.+.+|+... ++..                   
T Consensus       134 ~v~d~~~~~~------~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~  206 (361)
T 2oiz_A          134 GIVDVAKGDY------VEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA  206 (361)
T ss_dssp             EEEETTTTEE------EEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred             EEEECCCCcE------EEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence            8999654321      112 2221 12235567766 5666777778877777532 2211                   


Q ss_pred             --eeceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cC-------C---CceeEEEEecCc-EEEEEEC----------
Q psy12788        133 --WKGKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QY-------G---YEITDVAIMGND-RYLVART----------  187 (254)
Q Consensus       133 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~-------~---~~i~~i~~~~~~-~~~v~~~----------  187 (254)
                        ..+........++++.++|+..+.   ...+..  ..       +   ....-++|++++ +.+++..          
T Consensus       207 ~~~~g~~~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          207 PALDKDKAHFVSYYGNVYSADFSGDE---VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             CEECSSEEEEEBTTSEEEEEECSSSS---CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             ecccCCEEEEEeCCCeEEEEEecCCC---ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence              001111222234578888887552   111211  00       0   011237888874 4444432          


Q ss_pred             -CCcEEEEeccCCcee
Q psy12788        188 -PDTLLLGDLHRNLLS  202 (254)
Q Consensus       188 -d~~i~i~dl~~~~~~  202 (254)
                       +.++.+||+.++++.
T Consensus       284 ~~~~v~viD~~t~~~v  299 (361)
T 2oiz_A          284 PAAEIWVMDTKTKQRV  299 (361)
T ss_dssp             CCSEEEEEETTTTEEE
T ss_pred             CCceEEEEECCCCcEE
Confidence             348999999998754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.90  E-value=3e-06  Score=71.28  Aligned_cols=190  Identities=7%  Similarity=-0.012  Sum_probs=107.8

Q ss_pred             CCCCCEEEEecCC--eEEE-------EeCCCcEEEEe-CCCCEEEEeeec-CCCCCCCCEEEEEECCC-CCEEEEEeCCc
Q psy12788          6 HPVPPYALSWPAG--YILA-------AGSDRIVTIYE-SDGRVHRIFDYT-APHYKEREFTVACSSPS-GQAVVVGSYDN   73 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s-------~s~D~~i~vWd-~~g~~~~~~~~~-~~~~~~~~v~~~a~sPd-g~~la~gs~d~   73 (254)
                      .-..+.+++|+++  .+++       +..++.|.+|| .+|+.. .+... .. ++...+.+++++|+ |+++++...++
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~-~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEET-TEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccC-CCCCCCceEEEecCCCcEEEEECCCC
Confidence            3456789999864  3445       46788999999 667653 33210 01 23456899999999 87776655557


Q ss_pred             EEEEEecCCCcceeec-CceecC-CCCcEeEEEEecCCCeEEEeecC---------------CcEEEEeeeeeeeEe---
Q psy12788         74 IKLFAWSPSKSVWEEQ-PNKTIP-NLYTISALSWKRDGSRIACGGLC---------------GSVELFESVLKRTIW---  133 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~-~~~~~~-~~~~i~~l~~spdG~~la~g~~d---------------g~v~iwd~~~~~~~~---  133 (254)
                      +.+||.+ ..  .... ...... ....+.+++++|+|+++++...+               +.|..+|.. ++...   
T Consensus        94 l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           94 LLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             EEEEeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            7778754 22  2110 000000 12358899999999988877655               567667643 22110   


Q ss_pred             --eceeEEEEe----c-----------CCeEEEEeCC-CCCceeeEEEEecCC---CceeEEEEecCcEEEEEE-CCCcE
Q psy12788        134 --KGKFEMIYV----S-----------PSQVLVKPLS-GESKGRGVILKSQYG---YEITDVAIMGNDRYLVAR-TPDTL  191 (254)
Q Consensus       134 --~~~~~~~~~----~-----------~~~~~v~~~~-~~~~~~~~~l~s~~~---~~i~~i~~~~~~~~~v~~-~d~~i  191 (254)
                        .....+.+.    .           .+.+.+++.. ++.......+....+   ..+..+++++++.++++. .++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence              011112222    2           2345555554 221000011111111   347788999888766654 67899


Q ss_pred             EEEeccCCce
Q psy12788        192 LLGDLHRNLL  201 (254)
Q Consensus       192 ~i~dl~~~~~  201 (254)
                      .+||..+++.
T Consensus       250 ~~~d~~~g~~  259 (314)
T 1pjx_A          250 EVFGPDGGQP  259 (314)
T ss_dssp             EEECTTCBSC
T ss_pred             EEEcCCCCcE
Confidence            9999886654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.88  E-value=4.3e-08  Score=83.82  Aligned_cols=154  Identities=10%  Similarity=0.019  Sum_probs=99.6

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      ..+.+++|+++  .++..+.++.++.|  .++....+.     .+...+.+++|+|+|++++++..++ +.+||...  .
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEIS-----KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET--K   76 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEE-----SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT--C
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEe-----ccCccccCcEECCCCCEEEEECCCCEEEEEeCCC--C
Confidence            45677888874  45666778899999  444554443     3445679999999999888877664 77777432  2


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      ....   ........+.+++|+|||+++++...+    +.|.+||...++..                            
T Consensus        77 ~~~~---~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~----------------------------  125 (333)
T 2dg1_A           77 EIKR---PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ----------------------------  125 (333)
T ss_dssp             CEEE---EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE----------------------------
T ss_pred             cEEE---EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE----------------------------
Confidence            2211   111234579999999999988877666    57888875433211                            


Q ss_pred             EEEE-ecCCCceeEEEEecCcEEEEEECC-------CcEEEEeccCCce
Q psy12788        161 VILK-SQYGYEITDVAIMGNDRYLVARTP-------DTLLLGDLHRNLL  201 (254)
Q Consensus       161 ~~l~-s~~~~~i~~i~~~~~~~~~v~~~d-------~~i~i~dl~~~~~  201 (254)
                      ..+. ...+..+..+.++++++++++...       ..+..+|..++++
T Consensus       126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~  174 (333)
T 2dg1_A          126 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV  174 (333)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred             EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence            0010 012346788899988877776553       4566667666543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.87  E-value=6.6e-06  Score=68.38  Aligned_cols=184  Identities=9%  Similarity=0.018  Sum_probs=112.8

Q ss_pred             cCCCCCEEEEecCC-e-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecC
Q psy12788          5 QHPVPPYALSWPAG-Y-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSP   81 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~   81 (254)
                      .+...|.+++++++ . .++...++.|.+||.+++.. .+..  . .+...+.+++++|+|.++++...+ ++..|+.. 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~-~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKIT-EYPL--P-TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEC--S-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeE-EecC--C-cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            34567899999874 3 44444478899999556533 3321  1 234578999999999988776645 46677632 


Q ss_pred             CCcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------eceeEEEEec----------
Q psy12788         82 SKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------KGKFEMIYVS----------  143 (254)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~----------  143 (254)
                       . ....   ...+ ....+..+++.|+|+++++...++.|..||. .++...       .....+.+..          
T Consensus        87 -g-~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           87 -G-IIKE---YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             -S-CEEE---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             -C-cEEE---EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence             2 1211   1112 3346899999999998888777889999986 332211       0112222222          


Q ss_pred             CCeEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788        144 PSQVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~  204 (254)
                      .+.+..++. ++.   ...+. ......+..+++.+++.++++.. ++.+.++|. ++++..+
T Consensus       161 ~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~  218 (299)
T 2z2n_A          161 NNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF  218 (299)
T ss_dssp             TTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             CCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence            235555565 432   22121 11234578899998877776664 678999998 7765443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.86  E-value=2.1e-07  Score=76.90  Aligned_cols=181  Identities=10%  Similarity=0.022  Sum_probs=106.5

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV   85 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~   85 (254)
                      ..+.+++++++ .|..+..++.|.+||.++.....+..    .....+..++++|+|+++++...+ ++.+|+.  ....
T Consensus        67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~--~~~~  140 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA--GSKT  140 (270)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECT--TCCS
T ss_pred             CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECCCCEEEEEEC--CCce
Confidence            46788999874 34444448899999976655433321    222568999999999987776554 4767652  2221


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------eceeEEEEecC----------CeEEE
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------KGKFEMIYVSP----------SQVLV  149 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~----------~~~~v  149 (254)
                      ...   ........+..++++|+|+++++...++.|.+||...+....      .....+.+..+          +.+.+
T Consensus       141 ~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          141 QTV---LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  217 (270)
T ss_dssp             CEE---CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred             eEe---eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence            110   011122357889999999988877778999999975432211      11222333233          34445


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCc
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNL  200 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~  200 (254)
                      ++....   ....+.......+..++++++++++++. .+++|.++++...+
T Consensus       218 ~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          218 LLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ECTTCS---CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EcCCCC---cceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            554332   1111111111357788888877655544 47788888876654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.84  E-value=7.1e-07  Score=75.36  Aligned_cols=119  Identities=10%  Similarity=0.016  Sum_probs=81.0

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCC-Cc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPS-KS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~-~~   84 (254)
                      ..+.++++.|+  .|+  +.++.|+.||.+|+.+..+..    +....+.++.+.|||+++++.+.+.-+++.++.. +.
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~  110 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEV  110 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCE
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCE
Confidence            35778888874  455  457889999999999987752    2234688999999999999887633344444432 23


Q ss_pred             ceeecCceec-CCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe
Q psy12788         85 VWEEQPNKTI-PNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus        85 ~~~~~~~~~~-~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      .|+....... .+......++..+||+++++...++.|..||.. ++.++
T Consensus       111 l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A          111 LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            3332100000 111245567889999999999999999999987 66554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.84  E-value=2.8e-07  Score=81.86  Aligned_cols=137  Identities=9%  Similarity=-0.042  Sum_probs=96.9

Q ss_pred             CEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee-----ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE-----EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~-----~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      .++.++++|...++++|+.+++++|+...-.....     .......+... |+.|+|  ||++|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            58999999999999999999988998532110000     01112233445 999999  99999999 89999999974


Q ss_pred             eee---eEe-----------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEE
Q psy12788        128 LKR---TIW-----------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLL  193 (254)
Q Consensus       128 ~~~---~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i  193 (254)
                      ...   .+.           -..-.+....++.+.+|++..+.   ...+    ...|.+++++|++ ++++..|+++++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~---~~~~----~~~Vs~v~WSpkG-~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS---TKQL----AQNVTSFDVTNSQ-LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EEEE----EESEEEEEECSSE-EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc---cccc----cCCceEEEEcCCc-eEEEEcCCcEEE
Confidence            211   110           00112334578899999998773   2322    3479999999988 778999999999


Q ss_pred             EeccCCce
Q psy12788        194 GDLHRNLL  201 (254)
Q Consensus       194 ~dl~~~~~  201 (254)
                      |+...+.+
T Consensus       187 ~~~~~~~~  194 (388)
T 1xip_A          187 FAWRNGEM  194 (388)
T ss_dssp             EEEETTEE
T ss_pred             EcCCCccc
Confidence            98887664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.83  E-value=4.8e-06  Score=77.51  Aligned_cols=185  Identities=10%  Similarity=0.037  Sum_probs=110.1

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeC---CCCEEEEeeecCCCCCCCCEEEEEEC----CCCCEEEEEeCC--cEEE
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYES---DGRVHRIFDYTAPHYKEREFTVACSS----PSGQAVVVGSYD--NIKL   76 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~---~g~~~~~~~~~~~~~~~~~v~~~a~s----Pdg~~la~gs~d--~i~l   76 (254)
                      ..+..++++|+  ++++++.|+.|.+||.   +++.+.++..    +  .....++||    |||+++.+++..  .+.+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----C--CCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence            35678899884  7888899999999994   6777766641    1  246789999    799998887754  4778


Q ss_pred             EEecCCCcceeec-Cce-------------------------------------------------ecCCCCcEeEEEEe
Q psy12788         77 FAWSPSKSVWEEQ-PNK-------------------------------------------------TIPNLYTISALSWK  106 (254)
Q Consensus        77 ~d~~~~~~~~~~~-~~~-------------------------------------------------~~~~~~~i~~l~~s  106 (254)
                      +|..+.+...... ...                                                 .++.......+.|+
T Consensus       271 iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~  350 (567)
T 1qks_A          271 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD  350 (567)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred             EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence            8843322111000 000                                                 00001123357899


Q ss_pred             cCCCeEEEee-cCCcEEEEeeeeeeeEe---e---------c-ee--------EEEE-ecCCeEEEEeCCCCCc-----e
Q psy12788        107 RDGSRIACGG-LCGSVELFESVLKRTIW---K---------G-KF--------EMIY-VSPSQVLVKPLSGESK-----G  158 (254)
Q Consensus       107 pdG~~la~g~-~dg~v~iwd~~~~~~~~---~---------~-~~--------~~~~-~~~~~~~v~~~~~~~~-----~  158 (254)
                      |||+++++++ .++.|.++|+.+++...   -         + .|        -.+. .+++.+.+.|..+++.     .
T Consensus       351 pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k  430 (567)
T 1qks_A          351 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK  430 (567)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence            9999987766 57899999986554321   0         0 01        0111 2345777777766310     0


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEEEEEC--------CCcEEEEeccCC
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYLVART--------PDTLLLGDLHRN  199 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~v~~~--------d~~i~i~dl~~~  199 (254)
                      ....+.. .+..-.-|..+|+++++-...        .++|.++|+.+.
T Consensus       431 vv~~i~~-~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          431 ILDSFPA-LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEEEC-SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEEEec-CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            1111111 122224466788876554433        359999998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.81  E-value=2.4e-06  Score=72.34  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=98.2

Q ss_pred             CCCCCEEEEecCC-eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------Cc
Q psy12788          6 HPVPPYALSWPAG-YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------DN   73 (254)
Q Consensus         6 h~~~v~~l~w~~~-~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d~   73 (254)
                      +...|.+++++++ .|+.+. ++.|.+||. +|+. ..+...........++.++++|+|+++++...          ..
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            4567889999874 455554 567999994 4543 33321111011235789999999997765422          12


Q ss_pred             EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEE-EeecCCcEEEEee--eeeeeEeeceeEEEEecCCeEEEE
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIA-CGGLCGSVELFES--VLKRTIWKGKFEMIYVSPSQVLVK  150 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la-~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~v~  150 (254)
                      -+||.++..... .    ....+....+.++|+|||+.|. +.+.++.|..||.  ..++.....            .+.
T Consensus       130 ~~l~~~d~~g~~-~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~------------~~~  192 (297)
T 3g4e_A          130 GALYSLFPDHHV-K----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR------------SVY  192 (297)
T ss_dssp             EEEEEECTTSCE-E----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE------------EEE
T ss_pred             cEEEEEECCCCE-E----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE------------EEE
Confidence            467777653221 1    1112223567899999999765 4455788988885  222211000            001


Q ss_pred             eCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788        151 PLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       151 ~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~  202 (254)
                      ++.            ........+++++++.++++. ..+.|.++|..++++.
T Consensus       193 ~~~------------~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          193 KLE------------KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             ECC------------GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             ECC------------CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            111            112346778888888776665 4668999999887754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.81  E-value=4.4e-07  Score=77.71  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             CEEEEecCC--eEEEEeCC---------------------------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE
Q psy12788         10 PYALSWPAG--YILAAGSD---------------------------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS   59 (254)
Q Consensus        10 v~~l~w~~~--~l~s~s~D---------------------------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~   59 (254)
                      +..++|+|+  .|+.++.+                           ..|.+|| ..|+.++.+.     . + .+..++|
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-----~-~-~~~~~~~  178 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-----K-P-RFSSGIW  178 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE-----E-E-TTCEEEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec-----C-C-CcccccC
Confidence            789999984  57776632                           5688999 5565535553     3 2 5778999


Q ss_pred             CCCCCEEEEEeCC--------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC--------cEEE
Q psy12788         60 SPSGQAVVVGSYD--------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG--------SVEL  123 (254)
Q Consensus        60 sPdg~~la~gs~d--------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg--------~v~i  123 (254)
                      +||| ++++++.+        ..+||.++  .+....  .  ..+ ..+..+  ||||++|+.++.++        .|.+
T Consensus       179 spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~--l--~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~  248 (347)
T 2gop_A          179 HRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK--M--FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI  248 (347)
T ss_dssp             ETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE--E--EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred             CCCe-EEEEEecccccccccccccEEEeC--CCceEE--e--ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence            9999 77777543        34677766  222211  1  112 344444  99999999887543        6777


Q ss_pred             EeeeeeeeEe-----ece----------eEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECC
Q psy12788        124 FESVLKRTIW-----KGK----------FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTP  188 (254)
Q Consensus       124 wd~~~~~~~~-----~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d  188 (254)
                      ||  .++...     ...          +.++...++...+| +.++   ....+... ...|..+++++ ..+++++++
T Consensus       249 ~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g---~~~~~~~~-~~~v~~~~~s~-~~~~~~~~~  320 (347)
T 2gop_A          249 YD--GKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG---EIKPIAKG-RHWIMGFDVDE-IVVYLKETA  320 (347)
T ss_dssp             EC--SSCEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS---SEEEEECS-SSEEEEEEESS-SEEEEEECS
T ss_pred             EC--CCceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC---ceEEEecC-CCeEEeeeeeC-cEEEEEcCC
Confidence            87  222110     011          11222334566677 6644   33333332 56788999998 555566666


Q ss_pred             CcE-EEEeccCCce
Q psy12788        189 DTL-LLGDLHRNLL  201 (254)
Q Consensus       189 ~~i-~i~dl~~~~~  201 (254)
                      .+. .||.+. ++.
T Consensus       321 ~~~~~l~~~~-g~~  333 (347)
T 2gop_A          321 TRLRELFTWD-GEE  333 (347)
T ss_dssp             SSCCEEEEES-SSE
T ss_pred             CChHHheEeC-CcE
Confidence            543 677665 554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.78  E-value=1.5e-06  Score=82.54  Aligned_cols=182  Identities=10%  Similarity=0.046  Sum_probs=105.5

Q ss_pred             CEEEEecCC--eEEEEeCCCc----------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788         10 PYALSWPAG--YILAAGSDRI----------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS   70 (254)
Q Consensus        10 v~~l~w~~~--~l~s~s~D~~----------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs   70 (254)
                      +..++|+|+  .|+.++.|+.                |++|+ .+++....+.+... .++..+..++|||||++|+..+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-DEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-CCCeEEEEEEEcCCCCEEEEEE
Confidence            567999985  6888888766                99999 45441111113322 3556688999999999998875


Q ss_pred             C-----C-cEEEEEecC------CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC----cEEEEeeeee-----
Q psy12788         71 Y-----D-NIKLFAWSP------SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG----SVELFESVLK-----  129 (254)
Q Consensus        71 ~-----d-~i~l~d~~~------~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg----~v~iwd~~~~-----  129 (254)
                      .     + .+.+||...      ....+.    ....+...+.. .|+|||+.|+..+..+    .|.+||+..+     
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWV----KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCE----EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EccCCCccEEEEEECcccccccCCccceE----EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            3     3 367777653      111111    11223333333 5999999988777543    5888987543     


Q ss_pred             eeEe-e-c-------------eeEEEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEE-EE---C
Q psy12788        130 RTIW-K-G-------------KFEMIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLV-AR---T  187 (254)
Q Consensus       130 ~~~~-~-~-------------~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~---~  187 (254)
                      +.+. . .             .+.+++..++  ++.++++.++.  ....+ ......+..+++++++. ++. .+   +
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l-~~~~~~v~~~~~s~d~~~l~~~~ss~~~  403 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA--LLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLS  403 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC--EEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC--EEEec-CCCCceEEEEecCCCCCEEEEEEeCCCC
Confidence            1111 1 1             1111222233  34556665552  12222 22245677888887663 333 22   2


Q ss_pred             CCcEEEEeccCCc
Q psy12788        188 PDTLLLGDLHRNL  200 (254)
Q Consensus       188 d~~i~i~dl~~~~  200 (254)
                      +.++.+||+.+++
T Consensus       404 P~~i~~~d~~tg~  416 (710)
T 2xdw_A          404 PGIIYHCDLTKEE  416 (710)
T ss_dssp             CCEEEEEETTSSS
T ss_pred             CCEEEEEECCCCc
Confidence            5689999999887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.76  E-value=5.2e-05  Score=62.83  Aligned_cols=185  Identities=7%  Similarity=-0.038  Sum_probs=113.8

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~   82 (254)
                      +...|.+++++++  ..++...++.|..||.+|+. ..+..  . .....+.+++++|+|+++++...+ ++..+|.   
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~---  127 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGII-KEYTL--P-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD---  127 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEEC--S-STTCCEEEEEECTTSCEEEEETTTTEEEEECT---
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-EEEeC--C-CcCCCceeeEECCCCCEEEEecCCceEEEECC---
Confidence            3456889999874  44555557889999966653 33321  1 233568999999999988776555 4767764   


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-------ceeEEEEec----------CC
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-------GKFEMIYVS----------PS  145 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-------~~~~~~~~~----------~~  145 (254)
                      ......  .........+..+++.|+|+++++...++.|..||. .++....       ....+.+..          .+
T Consensus       128 ~g~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  204 (299)
T 2z2n_A          128 DGKIRE--YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN  204 (299)
T ss_dssp             TCCEEE--EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CCCEEE--ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence            111111  111112346899999999998887777889999987 4433210       112222222          33


Q ss_pred             eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCceeeEe
Q psy12788        146 QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~~  205 (254)
                      .+..++. ++.   ...+. ......+..+.++++++++++. .++.|.++|. .+++..+.
T Consensus       205 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~  261 (299)
T 2z2n_A          205 KIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYP  261 (299)
T ss_dssp             EEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEE
T ss_pred             eEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEe
Confidence            5566666 442   11221 1123468899999888877776 5679999998 56654443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.71  E-value=3e-07  Score=79.83  Aligned_cols=98  Identities=11%  Similarity=0.034  Sum_probs=60.7

Q ss_pred             eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCC-c----EEEEEecCCCcceeecCceecCC
Q psy12788         24 GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYD-N----IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        24 s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d-~----i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      ..+..|++|| .+|+.....      .+...+..++|+| +|+.|+..+.+ .    .+||.++........  ......
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~  236 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK--IKEHAE  236 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--SSCCCT
T ss_pred             CCcceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--eeccCC
Confidence            3556799999 566654333      2345789999999 89877766532 1    234444332222211  111001


Q ss_pred             CCcEeEEEEecCCCeEEEeecC-----CcEEEEeeeee
Q psy12788         97 LYTISALSWKRDGSRIACGGLC-----GSVELFESVLK  129 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~~d-----g~v~iwd~~~~  129 (254)
                      ...+..++|||||++|+.++.+     +.|.+||+.++
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            2358889999999998888654     44999997654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.70  E-value=2.4e-05  Score=68.81  Aligned_cols=156  Identities=9%  Similarity=-0.039  Sum_probs=89.8

Q ss_pred             cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEEecCCCcceeecCceecC
Q psy12788         28 IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----------DNIKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        28 ~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-----------d~i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      +|.++| .+++.+.++..    + ..+  .++|||||+.+.++..           +.+.++|....+..-.    ....
T Consensus        48 ~v~v~D~~t~~~~~~i~~----g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~----i~~~  116 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNG----G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD----IELP  116 (373)
T ss_pred             EEEEEECCCCeEEEEecC----C-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE----EECC
Confidence            889999 77887766641    2 122  8999999999888752           3477888643221111    1111


Q ss_pred             ------CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEee-ce-------------eEEEEecCCeEEEEeCC
Q psy12788         96 ------NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWK-GK-------------FEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        96 ------~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~-~~-------------~~~~~~~~~~~~v~~~~  153 (254)
                            .......++|||||++|++++.  ++.|.++| .+++.... -.             .......++++.+++. 
T Consensus       117 ~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          117 DAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             CccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence                  0122457999999999999885  47899999 87765433 11             1123345667777777 


Q ss_pred             CCCceeeE-EEEe--c-CC-Cce-eEEEEecC-cEEEEEECCCcEEEEeccCC
Q psy12788        154 GESKGRGV-ILKS--Q-YG-YEI-TDVAIMGN-DRYLVARTPDTLLLGDLHRN  199 (254)
Q Consensus       154 ~~~~~~~~-~l~s--~-~~-~~i-~~i~~~~~-~~~~v~~~d~~i~i~dl~~~  199 (254)
                      +++   .. ....  . .+ ..+ ....+.++ +.++..+..+.+.+.|+.++
T Consensus       195 ~g~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          195 AGG---AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             CCc---EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            553   11 1110  0 01 111 11233333 24444445678888888755

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.66  E-value=1.3e-05  Score=71.37  Aligned_cols=226  Identities=10%  Similarity=0.028  Sum_probs=124.6

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~   84 (254)
                      ..|..|+|+++  ++++...++.|++||.++..+..+..    .. .... ++|+|+|+.|.++..++ -+||.+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~----~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP----GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE----TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec----cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            36889999874  45555567899999965544444421    11 2233 89999999888877653 23444433221


Q ss_pred             ceeecCc-eecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee-----------cee-EEEEec-CCeEEE
Q psy12788         85 VWEEQPN-KTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK-----------GKF-EMIYVS-PSQVLV  149 (254)
Q Consensus        85 ~~~~~~~-~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~-----------~~~-~~~~~~-~~~~~v  149 (254)
                       +..... .... ....+.+++++|++..|.++..++.|+.||...+....-           .++ .+.+.. ++.+.+
T Consensus       205 -~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          205 -WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             -TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             -ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence             110000 0002 234678899999545555577788899999754321110           123 555555 355555


Q ss_pred             EeCCCCCc------eeeEEEEecC---C-----------CceeEEEEecCcEEEEEEC--CCcEEEEeccCCceeeEeCC
Q psy12788        150 KPLSGESK------GRGVILKSQY---G-----------YEITDVAIMGNDRYLVART--PDTLLLGDLHRNLLSEVLWP  207 (254)
Q Consensus       150 ~~~~~~~~------~~~~~l~s~~---~-----------~~i~~i~~~~~~~~~v~~~--d~~i~i~dl~~~~~~~~~~~  207 (254)
                      .|...+..      +....+....   +           .....|++++++.++++.+  ++.|+.+|+.++++..+.=.
T Consensus       284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred             EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence            54433210      0111111110   0           2367899998887777654  66999999888887655422


Q ss_pred             C-----CCCc-eeEEeeCceEEEEEeC-CeeEEEEeecCee
Q psy12788        208 D-----SGRN-EKFYFDNVTVCLVFNA-GELSIIEYGNNEI  241 (254)
Q Consensus       208 ~-----~~g~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~  241 (254)
                      .     .+|. ..-.|.. -..+++++ |.+-+.+.+.+.|
T Consensus       364 ~~~~g~~~g~~~~~~~~~-P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNY-PYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSS-EEEEEECSSSEEEEEESTTCEE
T ss_pred             CCCCCcCCCChhceEeCC-ceEEEEcCCCCEEEEECCCCeE
Confidence            0     0000 0011222 34577777 7777777765543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.63  E-value=1.2e-05  Score=68.09  Aligned_cols=166  Identities=11%  Similarity=0.042  Sum_probs=96.6

Q ss_pred             cCCCCCEEEEecCC-eEEEEe-CCCcEEEEeCCCCEEEEeeecCCCC-CCCCEEEEEECCCCCEEEE----EeCC-----
Q psy12788          5 QHPVPPYALSWPAG-YILAAG-SDRIVTIYESDGRVHRIFDYTAPHY-KEREFTVACSSPSGQAVVV----GSYD-----   72 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~l~s~s-~D~~i~vWd~~g~~~~~~~~~~~~~-~~~~v~~~a~sPdg~~la~----gs~d-----   72 (254)
                      .+...+..++++++ .|+.+. .++.|.+|+.+|+.. .+..... + ....++.++++|+|+++++    |..+     
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~-~~~~~~~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAH-LLVGRYA-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEECEET-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEE-EEEeccC-CCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence            34566889999874 455554 457899999767643 2211111 1 1234678999999999886    4321     


Q ss_pred             -------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC------CcEEEEeeeeeeeEeeceeEE
Q psy12788         73 -------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC------GSVELFESVLKRTIWKGKFEM  139 (254)
Q Consensus        73 -------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d------g~v~iwd~~~~~~~~~~~~~~  139 (254)
                             .-.||.++...+....  .  . .....+.++|+|||+.|.++...      +.|..||...+. ....    
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~--~--~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~----  230 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQR--M--A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR----  230 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEE--E--E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE----
T ss_pred             ccccccCCCeEEEEcCCCCcEEE--E--e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC----
Confidence                   2346665543332221  1  1 23456789999999988887765      678888864322 1000    


Q ss_pred             EEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        140 IYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       140 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                                          .... .........+.+.+++.++++. .+.|.++|.....+..+
T Consensus       231 --------------------~~~~-~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~  273 (305)
T 3dr2_A          231 --------------------RHFA-SVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHI  273 (305)
T ss_dssp             --------------------EEEE-CCSSSCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEE
T ss_pred             --------------------eEEE-ECCCCCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEE
Confidence                                0000 0011234567788778877766 44688888754443333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.63  E-value=1e-05  Score=67.92  Aligned_cols=185  Identities=8%  Similarity=0.023  Sum_probs=107.2

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEE-eeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---------
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRI-FDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---------   73 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~-~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~---------   73 (254)
                      +...|..++++++  .|..+..+..|.+||.+|+.... ...... .....+.+++++|+|+++++...+.         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            4466889999875  56666555579999955765422 110000 1123578999999999887765441         


Q ss_pred             -----EEEEEecCCCcceeecCceecCCCCcEeEEEEe----cCCCeEEEe-ecCCcEEEEeee-eeee-----Eee---
Q psy12788         74 -----IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWK----RDGSRIACG-GLCGSVELFESV-LKRT-----IWK---  134 (254)
Q Consensus        74 -----i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~s----pdG~~la~g-~~dg~v~iwd~~-~~~~-----~~~---  134 (254)
                           ..||.++.. .....    ...+......++|+    |||+.|.++ ..++.|.+||.. .++.     ...   
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~----~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQ----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEE----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccCCCCeEEEECCC-CCEEE----eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                 356665543 22211    11222356889999    999766555 467899999965 2221     110   


Q ss_pred             ----ceeEEEE----------ecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEEC-CCcEEEEeccC
Q psy12788        135 ----GKFEMIY----------VSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVART-PDTLLLGDLHR  198 (254)
Q Consensus       135 ----~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~-d~~i~i~dl~~  198 (254)
                          ....+.+          ...+.+.+++..++.  ....+ ......+..++|+++++ ++++.. ++.|..+|+..
T Consensus       223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~--~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ--PKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS--CSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc--EeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence                0111111          134566677766442  11222 22335688999988776 445543 46888888765


Q ss_pred             C
Q psy12788        199 N  199 (254)
Q Consensus       199 ~  199 (254)
                      .
T Consensus       300 ~  300 (314)
T 1pjx_A          300 N  300 (314)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.63  E-value=6.2e-07  Score=77.28  Aligned_cols=153  Identities=7%  Similarity=-0.071  Sum_probs=96.5

Q ss_pred             CCEEEEecCCeEEEEe--CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----------cE
Q psy12788          9 PPYALSWPAGYILAAG--SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----------NI   74 (254)
Q Consensus         9 ~v~~l~w~~~~l~s~s--~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----------~i   74 (254)
                      .+..+++..+.|..+.  .+++|.++| .+++.++.+...      .....++++|+|+++++...+           .+
T Consensus       132 ~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v  205 (328)
T 3dsm_A          132 STEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSL  205 (328)
T ss_dssp             BCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred             CcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceE
Confidence            5667777666666555  488999999 678777766521      234678999999987776533           46


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  154 (254)
                      .++|..  ......  ....+.......++|+|||++|.++..  .|.+||..+++.... .               +  
T Consensus       206 ~~id~~--t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~---------------~--  261 (328)
T 3dsm_A          206 YRIDAE--TFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P---------------F--  261 (328)
T ss_dssp             EEEETT--TTEEEE--EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C---------------S--
T ss_pred             EEEECC--CCeEEE--EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e---------------e--
Confidence            677743  222211  112221235789999999999988765  888888754432100 0               0  


Q ss_pred             CCceeeEEEEecCCCceeEEEEec-CcEEEEEE-----CCCcEEEEeccCCce
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMG-NDRYLVAR-----TPDTLLLGDLHRNLL  201 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~-~~~~~v~~-----~d~~i~i~dl~~~~~  201 (254)
                              + ...+.....++++| ++.++++.     .+++|.+||.. +++
T Consensus       262 --------~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          262 --------L-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             --------B-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             --------e-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence                    0 00134577889987 45555654     46789999987 553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.61  E-value=0.00015  Score=60.07  Aligned_cols=183  Identities=8%  Similarity=-0.004  Sum_probs=110.2

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCC
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~   82 (254)
                      ....+.+++++++  ..++...++.|.+||.+++.. .+.  .. .....+.+++++|+|+++++...+ ++..+|..  
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~--~~-~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIK-EFE--VP-TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEE--CS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT--
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceE-EEE--CC-CCCCcceeEEECCCCCEEEEecCCCeEEEECCC--
Confidence            3457889999874  444544678999999556544 232  21 233578999999999987766544 47677633  


Q ss_pred             CcceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE-e------eceeEEEEecC----------
Q psy12788         83 KSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI-W------KGKFEMIYVSP----------  144 (254)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~-~------~~~~~~~~~~~----------  144 (254)
                       .....   ...+ ....+..+++.|+|+++++...++.|..+|.. ++.. .      .....+.+..+          
T Consensus        92 -g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  166 (300)
T 2qc5_A           92 -GGFTE---YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQN  166 (300)
T ss_dssp             -SCEEE---EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             -CCeEE---ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCC
Confidence             22211   1111 23568999999999988877778889888865 3322 1      11222222222          


Q ss_pred             CeEEEEeCCCCCceeeEEEEe-cCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788        145 SQVLVKPLSGESKGRGVILKS-QYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s-~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~  204 (254)
                      +.+..++. ++   ....+.. .....+..+.+.+++.++++.. .+.+.++|. +++...+
T Consensus       167 ~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~  223 (300)
T 2qc5_A          167 NSIGRITN-TG---KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY  223 (300)
T ss_dssp             TEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             CeEEEECC-CC---cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence            34444554 33   1112211 1223578899988777777765 457999998 5554443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.59  E-value=7.3e-06  Score=77.79  Aligned_cols=190  Identities=9%  Similarity=0.015  Sum_probs=103.9

Q ss_pred             cCCCCCEEEEecCC--eEE-----EEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc---
Q psy12788          5 QHPVPPYALSWPAG--YIL-----AAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN---   73 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~-----s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~---   73 (254)
                      +|...+..++|+|+  +||     .|+.+.+|++|| .+|+.+....   . .  .....++|+ ||+.|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---~-~--~k~~~~~Ws-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---K-D--VKFSGISWL-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---E-E--EESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---C-C--ceeccEEEe-CCCEEEEEEecCccc
Confidence            35556788899985  455     233446899999 7777653211   0 1  112567999 999999887651   


Q ss_pred             -----------EEEEEecCCCcceeecCceecC--CCCcEeEEEEecCCCeEEEeec----CCcEEEEeeeee--e--eE
Q psy12788         74 -----------IKLFAWSPSKSVWEEQPNKTIP--NLYTISALSWKRDGSRIACGGL----CGSVELFESVLK--R--TI  132 (254)
Q Consensus        74 -----------i~l~d~~~~~~~~~~~~~~~~~--~~~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~--~--~~  132 (254)
                                 +++|++......-..  ..+.+  +...+.++.|||||++|+....    ...+.++|+..+  .  .+
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~--v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRL--VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEE--EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccCCCcEEEEEECCCCcccceE--EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                       555554322211000  11111  1234778999999999876554    247888886432  1  11


Q ss_pred             ee---cee--------EEEEec-----CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCC---cEE
Q psy12788        133 WK---GKF--------EMIYVS-----PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPD---TLL  192 (254)
Q Consensus       133 ~~---~~~--------~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~---~i~  192 (254)
                      ..   ..+        .+.+.+     ..++..+++.++.......+..+....+   .|++++.++ +...++   .|.
T Consensus       277 ~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          277 QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEE
T ss_pred             eCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEE
Confidence            10   111        111221     1367777887653101133444333333   666655444 444333   688


Q ss_pred             EEeccCCceeeEeC
Q psy12788        193 LGDLHRNLLSEVLW  206 (254)
Q Consensus       193 i~dl~~~~~~~~~~  206 (254)
                      ++|+..+....+..
T Consensus       354 ~~d~~g~~~~~l~~  367 (693)
T 3iuj_A          354 QFDYEGKRVREVAL  367 (693)
T ss_dssp             EECTTSCEEEEECC
T ss_pred             EEECCCCeeEEeec
Confidence            99998766555543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.55  E-value=9.4e-06  Score=71.92  Aligned_cols=162  Identities=12%  Similarity=0.020  Sum_probs=101.1

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-----------CCcEEEEEecCCCcceeecCcee
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-----------YDNIKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-----------~d~i~l~d~~~~~~~~~~~~~~~   93 (254)
                      +++|.+.| .+++.+.++..    +. .+ . +++||||+++.+++           .+.+.+||..+.+..-    ...
T Consensus        58 ~~~V~ViD~~t~~v~~~I~v----G~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~----~I~  126 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDG----GF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----DIE  126 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEE----CS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE----EEE
T ss_pred             CCEEEEEECCCCeEEEEEEC----CC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE----EEE
Confidence            67899999 78888877753    21 23 4 99999999876654           2348889865433211    111


Q ss_pred             cCC------CCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEeec-------------eeEEEEecCCeEEEEeC
Q psy12788         94 IPN------LYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWKG-------------KFEMIYVSPSQVLVKPL  152 (254)
Q Consensus        94 ~~~------~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~  152 (254)
                      .+.      ......++|+|||+++.+++.  ++.|.++|+.+++....-             +.......++++.+.++
T Consensus       127 v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          127 LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEEC
Confidence            111      113556999999999998875  689999998766543211             11235567888888888


Q ss_pred             CCCCceeeEEEEec-CC---Ccee-EEEEe-cCcEEEEEECCCcEEEEeccCCc
Q psy12788        153 SGESKGRGVILKSQ-YG---YEIT-DVAIM-GNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       153 ~~~~~~~~~~l~s~-~~---~~i~-~i~~~-~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      .+.+  .....+.. ..   ..+. ...|. ++++++..+.++++.+.|+.++.
T Consensus       207 ~~~g--~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          207 GTEG--TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             CSSS--CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             CCCC--eEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc
Confidence            7632  22221211 10   1121 24554 56677667778899999997664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.55  E-value=3e-06  Score=80.32  Aligned_cols=183  Identities=6%  Similarity=-0.055  Sum_probs=101.3

Q ss_pred             EEEEecCC--eEEEEeCCCc-------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q psy12788         11 YALSWPAG--YILAAGSDRI-------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--   72 (254)
Q Consensus        11 ~~l~w~~~--~l~s~s~D~~-------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--   72 (254)
                      ..++|+|+  .|+.++.|..             |++|+ .+++....+-+... .+...+.+++|||||++|+.++.+  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTFLQSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEEEEEEECCCCCEEEEEEeCCC
Confidence            67899985  6888888876             99999 44541111113333 455678999999999998876633  


Q ss_pred             -cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec----CCcEEEEeeeeee-----eEe-ec------
Q psy12788         73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL----CGSVELFESVLKR-----TIW-KG------  135 (254)
Q Consensus        73 -~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~----dg~v~iwd~~~~~-----~~~-~~------  135 (254)
                       ...||.++.....+..    ...+...+....| |||+ |+..+.    ++.|.+||+..+.     .+. ..      
T Consensus       250 ~~~~l~~~~~~~~~~~~----l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFRL----LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             TEEEEEEECTTCSSCEE----EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             CceEEEEEcCCCCceEE----eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence             2456666443332221    1223334555566 7777 544443    5789999975432     111 11      


Q ss_pred             -------eeEEEEecCCeEEEEeCC-CCCceeeEEEEecCCCceeEEEEecCcE-EEE-EEC---CCcEEEEeccCCcee
Q psy12788        136 -------KFEMIYVSPSQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMGNDR-YLV-ART---PDTLLLGDLHRNLLS  202 (254)
Q Consensus       136 -------~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v-~~~---d~~i~i~dl~~~~~~  202 (254)
                             ...+++..++..+++.+. .++  ....+.......+..+++++++. ++. .++   +.++++||+.+++..
T Consensus       324 ~~~~~~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          324 SVSIVGGHLSLEYLKDATSEVRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEECCEEEEEEEECCEEEEEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence                   111222334444444333 221  11111111134566777777653 332 322   468999999988753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.50  E-value=2.5e-08  Score=87.84  Aligned_cols=169  Identities=7%  Similarity=-0.016  Sum_probs=90.0

Q ss_pred             cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCcee
Q psy12788         16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~   93 (254)
                      ..+.+++++.|+.|+.|| .+|+++.++.     .  .++.+..+.++|+.+++++.|+ ++.||....+..|...  ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-----~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~--~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-----E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP--FT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-----C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS--CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-----C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee--cc
Confidence            456899999999999999 8999987765     2  2344555667888888877775 8888876655555431  11


Q ss_pred             cCCCCcEe-EEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece------------eEEEEecCCeEEEEeCCCCCceee
Q psy12788         94 IPNLYTIS-ALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK------------FEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        94 ~~~~~~i~-~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      .+  ..+. +.... ++..+++|+.++.+..||..+++.++...            .......++.+..+|..+++.--.
T Consensus        79 ~~--~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           79 IP--ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             HH--HHHTTCSCC------CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             Cc--cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            10  0010 00111 45577888999999999998887654321            111122345677777777641000


Q ss_pred             EEEEecCCCceeEEEEecC----cEEEEEECCCcEEEEeccCCce
Q psy12788        161 VILKSQYGYEITDVAIMGN----DRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~----~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ....     ......+.++    +.+++++.++.++.+|..+|++
T Consensus       156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             Eecc-----cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            1110     1112222321    5677888899999999999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.47  E-value=0.00032  Score=60.07  Aligned_cols=175  Identities=7%  Similarity=-0.048  Sum_probs=98.8

Q ss_pred             CEEEEecCC---eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcce
Q psy12788         10 PYALSWPAG---YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVW   86 (254)
Q Consensus        10 v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~   86 (254)
                      ....+|+++   .+++...++.|..||..+.....+.      .+..+.+++|+|+|+++++. .+++.+||.....  .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~--~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA------LPFMGSALAKISDSKQLIAS-DDGLFLRDTATGV--L  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE------CSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCC--E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE------CCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCc--E
Confidence            467889873   4666667889999995554444442      23569999999999887654 5667788854322  2


Q ss_pred             eecCceecC---CCCcEeEEEEecCCCeEEEeec------CCcEEEEeeeeeeeEe--e---ceeEEEEec---------
Q psy12788         87 EEQPNKTIP---NLYTISALSWKRDGSRIACGGL------CGSVELFESVLKRTIW--K---GKFEMIYVS---------  143 (254)
Q Consensus        87 ~~~~~~~~~---~~~~i~~l~~spdG~~la~g~~------dg~v~iwd~~~~~~~~--~---~~~~~~~~~---------  143 (254)
                      ..  .....   ....+++++++|||+++++...      .+.|..+|  .++...  .   ....+.+..         
T Consensus       122 ~~--~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          122 TL--HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             EE--EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             EE--EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence            11  11111   1236899999999997765442      23444444  222111  0   011122222         


Q ss_pred             --CCeEEEEeCC--CC-CceeeEEEEec--CCCceeEEEEecCcEEEEEE-CCCcEEEEecc
Q psy12788        144 --PSQVLVKPLS--GE-SKGRGVILKSQ--YGYEITDVAIMGNDRYLVAR-TPDTLLLGDLH  197 (254)
Q Consensus       144 --~~~~~v~~~~--~~-~~~~~~~l~s~--~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~  197 (254)
                        .+++.++++.  ++ .......+...  .......+.+++++.++++. .++.|.++|..
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence              3456666664  33 11011112111  12346678888777766665 45788889874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.46  E-value=3.8e-05  Score=65.00  Aligned_cols=101  Identities=13%  Similarity=-0.008  Sum_probs=65.2

Q ss_pred             ccCCCCCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788          4 VQHPVPPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~   79 (254)
                      ..+...+...+|++  + .+++...++.|..|+.+|+. ..+.     .+...+..++++|+|+++++...+ ++.+|+.
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~-----~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLL-----DATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEE-----ESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEe-----CCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            34445567889987  3 46777778899999977763 3332     233568999999999977665444 4777774


Q ss_pred             cCCCcceeecCceecCC--CCcEeEEEEecCCCeEEE
Q psy12788         80 SPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIAC  114 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~  114 (254)
                      +   +..... ......  ...+++++++|||+++++
T Consensus       115 ~---g~~~~~-~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A          115 D---GQAHLL-VGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             T---SCEEEE-ECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             C---CCEEEE-EeccCCCccCCCCCEEECCCCCEEEe
Confidence            3   212110 000111  235778999999998886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.44  E-value=5.1e-05  Score=64.04  Aligned_cols=97  Identities=10%  Similarity=0.030  Sum_probs=62.8

Q ss_pred             CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcc
Q psy12788          9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSV   85 (254)
Q Consensus         9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~   85 (254)
                      -..+..|++  + .+++...+++|..||..+.....+.      ....+.+++++|+|++++. ..+++.+||...  ..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~--g~   84 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT------MDAPVSSVALRQSGGYVAT-IGTKFCALNWKE--QS   84 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------CSSCEEEEEEBTTSSEEEE-ETTEEEEEETTT--TE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe------CCCceEEEEECCCCCEEEE-ECCeEEEEECCC--Cc
Confidence            456788987  2 4666667889999995443333332      2357999999999996554 455788888543  22


Q ss_pred             eeecCceecC---CCCcEeEEEEecCCCeEEEee
Q psy12788         86 WEEQPNKTIP---NLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        86 ~~~~~~~~~~---~~~~i~~l~~spdG~~la~g~  116 (254)
                      ...  .....   ....++.++++|||+++++..
T Consensus        85 ~~~--~~~~~~~~~~~~~~di~~d~dG~l~~~~~  116 (297)
T 3g4e_A           85 AVV--LATVDNDKKNNRFNDGKVDPAGRYFAGTM  116 (297)
T ss_dssp             EEE--EEECCTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred             EEE--EEecCCCCCCCCCCCEEECCCCCEEEecC
Confidence            221  11111   123688999999999776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.41  E-value=1.7e-05  Score=75.77  Aligned_cols=183  Identities=14%  Similarity=0.060  Sum_probs=100.0

Q ss_pred             EEEEecCC-eEEEEeCCCc--------------EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--
Q psy12788         11 YALSWPAG-YILAAGSDRI--------------VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--   72 (254)
Q Consensus        11 ~~l~w~~~-~l~s~s~D~~--------------i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--   72 (254)
                      ..++|+|+ .|+.++.|..              |++|+ .++.....+-+... .++..+..++|||||++|+..+.+  
T Consensus       212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECCCCCEEEEEEEccC
Confidence            56789885 6777777654              88898 44431111113322 344468899999999998876632  


Q ss_pred             ----cEEEEEecCCCcc-eeecCceecCCCCcEeEEEEecCCCeEEEeecC----CcEEEEeeeee--e--eEe-e----
Q psy12788         73 ----NIKLFAWSPSKSV-WEEQPNKTIPNLYTISALSWKRDGSRIACGGLC----GSVELFESVLK--R--TIW-K----  134 (254)
Q Consensus        73 ----~i~l~d~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d----g~v~iwd~~~~--~--~~~-~----  134 (254)
                          .+.+||....... +..    ...+...+... ++|||+.|+..+.+    +.|.+||+..+  .  .+. .    
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~----l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~  365 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTA----LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN  365 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEE----EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred             CCcceEEEEECCCCCCcccEE----ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence                3667776543111 211    11222233333 45999999988764    44888987542  1  111 0    


Q ss_pred             --------ceeEEEEecCCeEEEEeCC-CCCceeeEEEEecCCCceeEEEEecCcE-EE-EEE---CCCcEEEEeccCCc
Q psy12788        135 --------GKFEMIYVSPSQVLVKPLS-GESKGRGVILKSQYGYEITDVAIMGNDR-YL-VAR---TPDTLLLGDLHRNL  200 (254)
Q Consensus       135 --------~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~-v~~---~d~~i~i~dl~~~~  200 (254)
                              +...++...++...++.+. .++  ....+.......+..+++++++. ++ +.+   ++.++++||+.+++
T Consensus       366 l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          366 LESVGIAGNRLFASYIHDAKSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEEBTEEEEEEEETTEEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEECCEEEEEEEECCEEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence                    1112223334444444332 221  11122111234577888887654 33 222   24689999999887


Q ss_pred             e
Q psy12788        201 L  201 (254)
Q Consensus       201 ~  201 (254)
                      .
T Consensus       444 ~  444 (741)
T 1yr2_A          444 T  444 (741)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.39  E-value=0.00093  Score=58.60  Aligned_cols=108  Identities=7%  Similarity=0.021  Sum_probs=65.2

Q ss_pred             EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeec-CCCC-CCCCEEEEEECCCCCEEEEEeC--C-c
Q psy12788         12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYT-APHY-KEREFTVACSSPSGQAVVVGSY--D-N   73 (254)
Q Consensus        12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~-~~~~-~~~~v~~~a~sPdg~~la~gs~--d-~   73 (254)
                      .++++|+  .|+.+.          .+++|.++| .+++.+..+... .... +......++|+|||++|.+++.  + .
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            7888874  566654          367899999 677777666421 0000 0123457899999999988764  2 4


Q ss_pred             EEEEEecCCCcceeecCcee-cCCCCcEeEEEEecCCC-eEEEeecCCcEEEEeeeeee
Q psy12788         74 IKLFAWSPSKSVWEEQPNKT-IPNLYTISALSWKRDGS-RIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdG~-~la~g~~dg~v~iwd~~~~~  130 (254)
                      +.++| ...+..      .. ++...   ++.+.|+|+ .+++.+.||.+.++|. +++
T Consensus       150 v~viD-~t~~~~------~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~  197 (373)
T 2mad_H          150 VGLVV-QGGSSD------DQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG  197 (373)
T ss_pred             EEEEE-CCCCEE------eEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence            77888 643321      12 22211   245556653 4455667788877777 543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.36  E-value=0.00071  Score=55.85  Aligned_cols=182  Identities=7%  Similarity=-0.069  Sum_probs=108.5

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSK   83 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~   83 (254)
                      ...+..++++++  ..++...++.|..+|.+|+.. .+..  . .....+.+++++|+|+++++...+ ++..++..   
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~-~~~~--~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---  133 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT-EYPL--P-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD---  133 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEEC--S-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT---
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE-EecC--C-CCCCCCccceECCCCCEEEEccCCCeEEEECCC---
Confidence            356888999873  444444577899999667653 3322  1 233568999999999988776544 46666632   


Q ss_pred             cceeecCceecC-CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-e------ceeEEEEecC----------C
Q psy12788         84 SVWEEQPNKTIP-NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-K------GKFEMIYVSP----------S  145 (254)
Q Consensus        84 ~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-~------~~~~~~~~~~----------~  145 (254)
                      .....   ...+ ....+..+++.|+|+++++...++.|..+|. .++... .      ....+.+..+          +
T Consensus       134 g~~~~---~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  209 (300)
T 2qc5_A          134 GTIYE---YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN  209 (300)
T ss_dssp             SCEEE---EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             CCEEE---ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence            21111   1112 2346899999999997776666788999986 332211 0      1122222222          2


Q ss_pred             eEEEEeCCCCCceeeEEEE-ecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeE
Q psy12788        146 QVLVKPLSGESKGRGVILK-SQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~  204 (254)
                      .+..++. ++   ...... ......+..|++++++.++++.. ++.|..+|. ++++..+
T Consensus       210 ~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          210 KIGRITT-TG---EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY  265 (300)
T ss_dssp             EEEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred             EEEEEcC-CC---cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence            4555555 33   111111 11234578899998887777664 578999998 4555444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.33  E-value=9e-05  Score=65.23  Aligned_cols=98  Identities=8%  Similarity=-0.094  Sum_probs=65.4

Q ss_pred             EEEEeCCC----cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------C-cEEEEEecCCC
Q psy12788         20 ILAAGSDR----IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------D-NIKLFAWSPSK   83 (254)
Q Consensus        20 l~s~s~D~----~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d-~i~l~d~~~~~   83 (254)
                      .++-..++    +|.+.| .+++.+.++..    +. .+  .++|+|||+++.++..          + .+.+||..+.+
T Consensus        35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~v----G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           35 HITLPAYFAGTTENWVSCAGCGVTLGHSLG----AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEECTTTCSSEEEEEEETTTTEEEEEEEE----CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             EEECCccCCccceEEEEECCCCeEEEEEeC----CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            44444455    788999 78888888763    22 24  7999999998887751          3 48899865433


Q ss_pred             cceeecCceecCC------CCcEeEEEEecCCCeEEEeec--CCcEEE--Eeeee
Q psy12788         84 SVWEEQPNKTIPN------LYTISALSWKRDGSRIACGGL--CGSVEL--FESVL  128 (254)
Q Consensus        84 ~~~~~~~~~~~~~------~~~i~~l~~spdG~~la~g~~--dg~v~i--wd~~~  128 (254)
                      ....    ...+.      -.....+++||||++++++..  ...|.+  +|..+
T Consensus       108 vv~~----I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          108 PIAD----IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEE----EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEE----EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            2211    11110      013456999999999999985  356888  99865

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.31  E-value=3.7e-05  Score=69.00  Aligned_cols=171  Identities=10%  Similarity=0.000  Sum_probs=100.4

Q ss_pred             cCCeEEEEeC-C----CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-----------CcEEEEE
Q psy12788         16 PAGYILAAGS-D----RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-----------DNIKLFA   78 (254)
Q Consensus        16 ~~~~l~s~s~-D----~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-----------d~i~l~d   78 (254)
                      +++.+..+.. +    ++|.+.| .+++.+.++..    +. .+  .++++|||+++.++..           +.+.++|
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v----G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG----GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE----CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC----CC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            3444444443 3    6899999 78888888763    21 23  7999999998777652           2477888


Q ss_pred             ecCCCcceeecCceecC------CCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEeec-------------ee
Q psy12788         79 WSPSKSVWEEQPNKTIP------NLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWKG-------------KF  137 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~------~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~~-------------~~  137 (254)
                      ....+..-    ....+      .......+.|||||+++.+++.  ++.|.+.|+.+++....-             ..
T Consensus       156 ~~t~~vv~----~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~  231 (426)
T 3c75_H          156 PVTFLPIA----DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV  231 (426)
T ss_dssp             TTTCCEEE----EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             CCCCcEEE----EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcE
Confidence            54433211    11111      0123456899999999999875  578999998765543211             11


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEe---cCC-Cce-eEEEEecCc-EEEEEECCCcEEEEeccCCc
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKS---QYG-YEI-TDVAIMGND-RYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~-~~i-~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~  200 (254)
                      .+.+..++++.+.++.++.   ......   ..+ .++ ..+.+.+++ +++.....+++.+.|+..+.
T Consensus       232 ~v~~~~dG~~~~V~~~~~~---v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGE---TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             EEEEETTSSEEEEECCTTC---CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             EEEEcCCCCEEEEECCCCc---EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence            2345566777767774442   111100   000 111 134556554 44555566789999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.29  E-value=0.00028  Score=60.43  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=68.9

Q ss_pred             CCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-CCCEEEEEECCCCCEEEEEeC-----CcEEEE
Q psy12788          6 HPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-EREFTVACSSPSGQAVVVGSY-----DNIKLF   77 (254)
Q Consensus         6 h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-~~~v~~~a~sPdg~~la~gs~-----d~i~l~   77 (254)
                      ++..|.+++|+++ .++.++.+ .|.+|| .+|+.. .+..... .. ...++.++++|+|+++++...     ....||
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEeeCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence            3457889999874 44445544 599999 566643 2321101 11 235889999999998765432     124566


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV  127 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~  127 (254)
                      .++ . .....    ...+......++|+|||+.|..+ +.++.|.+||..
T Consensus       165 ~~~-~-g~~~~----~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          165 HVA-K-GKVTK----LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEE-T-TEEEE----EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             EEe-C-CcEEE----eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            655 2 22211    11122346789999999977555 457889999974

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.07  E-value=0.00085  Score=57.71  Aligned_cols=120  Identities=2%  Similarity=-0.007  Sum_probs=71.9

Q ss_pred             cCCCCCEEEEecCC-eEEEEeC------CCcEEEEe-CCCCEEEEeeecCC-CCCCCCEEEEEECCCC-CEEEEEe---C
Q psy12788          5 QHPVPPYALSWPAG-YILAAGS------DRIVTIYE-SDGRVHRIFDYTAP-HYKEREFTVACSSPSG-QAVVVGS---Y   71 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~-~~~~~~v~~~a~sPdg-~~la~gs---~   71 (254)
                      +|-..|..++++++ .|..+..      +.+|.+|| .+|+.++.+..... ..+...+..++++|++ ..+++.+   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35567999999984 4544432      57899999 67877777653211 0122356899999865 4445544   3


Q ss_pred             C-cEEEEEecCCCcceeecCc---------------eecC----------CCCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         72 D-NIKLFAWSPSKSVWEEQPN---------------KTIP----------NLYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        72 d-~i~l~d~~~~~~~~~~~~~---------------~~~~----------~~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      + ++.+||+...+ .+.....               ..+.          -...+..|+|||||+.|.++..++. ++|.
T Consensus       144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~  221 (343)
T 2qe8_A          144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYR  221 (343)
T ss_dssp             GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEE
T ss_pred             CCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEE
Confidence            4 48888865322 2221000               0000          0123688999999999998887774 4454


Q ss_pred             e
Q psy12788        126 S  126 (254)
Q Consensus       126 ~  126 (254)
                      +
T Consensus       222 ~  222 (343)
T 2qe8_A          222 I  222 (343)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.00  E-value=0.00044  Score=62.01  Aligned_cols=183  Identities=9%  Similarity=0.059  Sum_probs=103.7

Q ss_pred             EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeec-CCCC-CCCCEEEEEECCCCCEEEEEeC--C-c
Q psy12788         12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYT-APHY-KEREFTVACSSPSGQAVVVGSY--D-N   73 (254)
Q Consensus        12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~-~~~~-~~~~v~~~a~sPdg~~la~gs~--d-~   73 (254)
                      .++++|+  .|+.+.          .++.|.++| .+++.++++... .... .......++|+|||+++.++..  + .
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            7888884  455554          367899999 788888777532 0000 0122346799999999888764  2 4


Q ss_pred             EEEEEecCCCcceeecCceecCC---------------------------CCcE----------------eEEEEecCCC
Q psy12788         74 IKLFAWSPSKSVWEEQPNKTIPN---------------------------LYTI----------------SALSWKRDGS  110 (254)
Q Consensus        74 i~l~d~~~~~~~~~~~~~~~~~~---------------------------~~~i----------------~~l~~spdG~  110 (254)
                      +.+.|....+..-..    ..+.                           ...+                ..+.|+|||.
T Consensus       202 VsVID~~t~kvv~~I----~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          202 VGVVDLEGKTFDRML----DVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEETTTTEEEEEE----ECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEEEECCCCeEEEEE----EcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            778886543221110    0000                           0000                1134566666


Q ss_pred             eEEEeecCCcEEEEeeeeeee------------------Eee----------ceeEEEEec----------CCeEEEEeC
Q psy12788        111 RIACGGLCGSVELFESVLKRT------------------IWK----------GKFEMIYVS----------PSQVLVKPL  152 (254)
Q Consensus       111 ~la~g~~dg~v~iwd~~~~~~------------------~~~----------~~~~~~~~~----------~~~~~v~~~  152 (254)
                      .++..+..+.|.+.|...+..                  ...          +........          .+++.+.|+
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            666666667777777632110                  000          111111111          135778888


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcE--EEEEE-CCCcEEEEeccCCcee
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDR--YLVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~-~d~~i~i~dl~~~~~~  202 (254)
                      .+.+.-..+    ..+.....|.|+++++  ++++. .++++.+.|+.++++.
T Consensus       358 ~T~kvv~~I----~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          358 ETGERINKI----ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             TTCCEEEEE----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCeEEEEE----ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            877421222    2244678899998875  45566 4889999999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.91  E-value=0.0025  Score=56.46  Aligned_cols=112  Identities=9%  Similarity=-0.060  Sum_probs=63.2

Q ss_pred             EEecC--CeEEEEeCCC--cEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCCcc
Q psy12788         13 LSWPA--GYILAAGSDR--IVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSKSV   85 (254)
Q Consensus        13 l~w~~--~~l~s~s~D~--~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~~~   85 (254)
                      ++|++  +.|+++..++  .|.+++. .+.....+..... .....+.+++++| +|.+++ +..++ ++.||.......
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~  253 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT  253 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE
Confidence            77876  3677777655  7888883 3433333311101 1335678899999 565555 44454 777775432211


Q ss_pred             eeecCceecCCCC--cEeEEEEecC-CCeEEEeecCCcEEEEeee
Q psy12788         86 WEEQPNKTIPNLY--TISALSWKRD-GSRIACGGLCGSVELFESV  127 (254)
Q Consensus        86 ~~~~~~~~~~~~~--~i~~l~~spd-G~~la~g~~dg~v~iwd~~  127 (254)
                      .... ........  +...++|+|+ |.++++-..++.|+.||..
T Consensus       254 ~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          254 LIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             EEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             EEec-ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence            1000 00111111  1238999995 6666666678889999853

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.91  E-value=0.0089  Score=51.51  Aligned_cols=174  Identities=14%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             EecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCc
Q psy12788         14 SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPN   91 (254)
Q Consensus        14 ~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~   91 (254)
                      +...+.|+.++.|+.+..+| .+|+.+..+..... ....+    ...  +..+.+++.++ +..+|....+..|.....
T Consensus       100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~p----~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-ALSRP----VVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-CCSCC----EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-eEcCC----EEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            33456788889999999999 78998866542211 11111    121  34666677675 888887666667754211


Q ss_pred             eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeE-----------------------EEEe--cCCe
Q psy12788         92 KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE-----------------------MIYV--SPSQ  146 (254)
Q Consensus        92 ~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~-----------------------~~~~--~~~~  146 (254)
                      ...............  +..+.+++.+|.+..+|..+++.++.....                       ..+.  .++.
T Consensus       173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~  250 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN  250 (376)
T ss_dssp             C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred             CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence            000000000112222  456777888999999998777665432110                       0111  2456


Q ss_pred             EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        147 VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       147 ~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +...|..+++    ....... .....+... ++.++++..++.+..+|..+|+..
T Consensus       251 l~~~d~~tG~----~~w~~~~-~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          251 LTALDLRSGQ----IMWKREL-GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             EEEEETTTCC----EEEEECC-CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEEECCCCc----EEeeccC-CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence            7777777773    2222222 234445555 467888888899999999999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.88  E-value=0.0005  Score=60.83  Aligned_cols=154  Identities=15%  Similarity=0.109  Sum_probs=83.7

Q ss_pred             EEEECCCCCEEEEEeC-----C-cEEEEEecCCCcceeecCceecC-CCCcEeEEEEecCCCeEEEee----------cC
Q psy12788         56 VACSSPSGQAVVVGSY-----D-NIKLFAWSPSKSVWEEQPNKTIP-NLYTISALSWKRDGSRIACGG----------LC  118 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~-----d-~i~l~d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdG~~la~g~----------~d  118 (254)
                      .....|+++.+-+...     + .+.++|..+.+-.      ..++ ...+ . +++||||+++.+++          .+
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~------~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI------GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE------EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE------EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            3456899988766653     3 4777775432211      1222 2223 4 99999999998876          25


Q ss_pred             CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC--CCcEEEEe
Q psy12788        119 GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART--PDTLLLGD  195 (254)
Q Consensus       119 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~--d~~i~i~d  195 (254)
                      +.|.+||..+.+....-               .+..+.       +...+..-..++|+|++++ +++..  ++++.+.|
T Consensus       109 ~~VsviD~~t~~v~~~I---------------~v~~g~-------r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID  166 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADI---------------ELPDAP-------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD  166 (386)
T ss_dssp             EEEEEECTTTCCEEEEE---------------EETTCC-------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CEEEEEECCCCeEEEEE---------------ECCCcc-------ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE
Confidence            67888887554432110               000000       0011234567888888864 34443  57899999


Q ss_pred             ccCCcee-eEeCCCCCCceeEEeeCceEEEEEeCCeeEEEEeec-Cee
Q psy12788        196 LHRNLLS-EVLWPDSGRNEKFYFDNVTVCLVFNAGELSIIEYGN-NEI  241 (254)
Q Consensus       196 l~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  241 (254)
                      +.++++. .+.-  +.....|.-.......+-.+|++.++..+. +.+
T Consensus       167 ~~t~~vv~tI~v--~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          167 LEGKAFKRMLDV--PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             TTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCCCcEEEEEEC--CCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            9999864 3321  211112222222222333347788888775 444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.84  E-value=0.002  Score=60.96  Aligned_cols=115  Identities=13%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             CeEEEEeC------CCcEEEEe-CCCCEEEEeeecCCCCC----------------------------CCCEEEEEECCC
Q psy12788         18 GYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPHYK----------------------------EREFTVACSSPS   62 (254)
Q Consensus        18 ~~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~~~~----------------------------~~~v~~~a~sPd   62 (254)
                      +.++.++.      |+.|+.+| .+|+.+..+..... ..                            ......++++|+
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG-DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC-CccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            45555543      78999999 89999877753211 00                            001135789999


Q ss_pred             CCEEEEEeCCc--------------------EEEEEecCCCcceeecCcee----cCCCCcEeEEEEecCC---CeEEEe
Q psy12788         63 GQAVVVGSYDN--------------------IKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRDG---SRIACG  115 (254)
Q Consensus        63 g~~la~gs~d~--------------------i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spdG---~~la~g  115 (254)
                      +.+|.++..+.                    +..+|..+.+..|.......    ........-+....||   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            98888776542                    66777666677776421100    0001223334555689   789999


Q ss_pred             ecCCcEEEEeeeeeeeEe
Q psy12788        116 GLCGSVELFESVLKRTIW  133 (254)
Q Consensus       116 ~~dg~v~iwd~~~~~~~~  133 (254)
                      +.+|.+.++|..+++.++
T Consensus       334 ~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             CTTSEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCCEec
Confidence            999999999988776653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.82  E-value=0.0014  Score=61.92  Aligned_cols=185  Identities=11%  Similarity=0.039  Sum_probs=94.5

Q ss_pred             EEEEec-CCeEEEEeCCC-------------cEEEEe-CCCCEEEEeeecCCCC-CCCCEEEEEECCCCCEEEEEeC---
Q psy12788         11 YALSWP-AGYILAAGSDR-------------IVTIYE-SDGRVHRIFDYTAPHY-KEREFTVACSSPSGQAVVVGSY---   71 (254)
Q Consensus        11 ~~l~w~-~~~l~s~s~D~-------------~i~vWd-~~g~~~~~~~~~~~~~-~~~~v~~~a~sPdg~~la~gs~---   71 (254)
                      ..++|+ .+.|+.++.|.             .|++|+ .++.....+-+... . ++..+.+++|||||++|+....   
T Consensus       178 ~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            456776 34688777774             389998 34321101113322 3 4456789999999998865432   


Q ss_pred             -C-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-C---CcEEEEeeeeeee------Eee-----
Q psy12788         72 -D-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-C---GSVELFESVLKRT------IWK-----  134 (254)
Q Consensus        72 -d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-d---g~v~iwd~~~~~~------~~~-----  134 (254)
                       . .+.++|.......+..    ...+....... |+|+|..|+.-+. +   +.|..+|+..+..      ...     
T Consensus       257 ~~~~i~~~d~~~~~~~~~~----l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLT----VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEE----EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             CCcEEEEEECCCCCCceEE----EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence             2 3566665432222211    12222333333 7888877765553 2   5688888654221      111     


Q ss_pred             -----ceeE-EEEecCC--eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEEC----CCcEEEEeccCCce
Q psy12788        135 -----GKFE-MIYVSPS--QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVART----PDTLLLGDLHRNLL  201 (254)
Q Consensus       135 -----~~~~-~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~----d~~i~i~dl~~~~~  201 (254)
                           +.+. .....++  ++.++++..+   ....+.-.....+..+.+++++ .++...+    ..++..+|+.+++.
T Consensus       332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence                 1111 1112222  4566676543   2222211111245555555554 3333333    37899999988875


Q ss_pred             eeE
Q psy12788        202 SEV  204 (254)
Q Consensus       202 ~~~  204 (254)
                      ..+
T Consensus       409 ~~l  411 (693)
T 3iuj_A          409 SLY  411 (693)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.80  E-value=0.00029  Score=61.99  Aligned_cols=181  Identities=7%  Similarity=-0.076  Sum_probs=101.9

Q ss_pred             EEEecCC--eEEEEe----------CCCcEEEEe-CCCCEEEEeeecCCCCC---CCCEEEEEECCCCCEEEEEeCC---
Q psy12788         12 ALSWPAG--YILAAG----------SDRIVTIYE-SDGRVHRIFDYTAPHYK---EREFTVACSSPSGQAVVVGSYD---   72 (254)
Q Consensus        12 ~l~w~~~--~l~s~s----------~D~~i~vWd-~~g~~~~~~~~~~~~~~---~~~v~~~a~sPdg~~la~gs~d---   72 (254)
                      .++++|+  .+..+.          .+++|.+|| .+++.+.++..... +.   ......++|+|||+++.++...   
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-~~~~~g~~P~~ia~SpDGk~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-PRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-CSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-cccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence            7888874  566654          378899999 88899888763200 00   0123468999999998887642   


Q ss_pred             cEEE--EEecCCCcceeecCc----------------------eecC-------------------CCCcEeEEEEecCC
Q psy12788         73 NIKL--FAWSPSKSVWEEQPN----------------------KTIP-------------------NLYTISALSWKRDG  109 (254)
Q Consensus        73 ~i~l--~d~~~~~~~~~~~~~----------------------~~~~-------------------~~~~i~~l~~spdG  109 (254)
                      .+.+  +|... .........                      ....                   ...+.   + +|++
T Consensus       148 ~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~  222 (368)
T 1mda_H          148 AAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP  222 (368)
T ss_dssp             EEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred             eEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence            3666  66422 000000000                      0000                   00111   2 5666


Q ss_pred             CeEEEeecCCcEEEEeeeeee--eE------------------------e--eceeEE-EEe---c-----CCeEEEEeC
Q psy12788        110 SRIACGGLCGSVELFESVLKR--TI------------------------W--KGKFEM-IYV---S-----PSQVLVKPL  152 (254)
Q Consensus       110 ~~la~g~~dg~v~iwd~~~~~--~~------------------------~--~~~~~~-~~~---~-----~~~~~v~~~  152 (254)
                      ..++..+. +.|.+.|...+.  ..                        .  ++.... ...   .     .+.+.+.|+
T Consensus       223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~  301 (368)
T 1mda_H          223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence            66666666 788888864211  00                        0  111111 112   1     135568888


Q ss_pred             CCCCceeeEEEEecCCCceeEEEEecCcE--EEEEE-CCCcEEEEeccCCceee
Q psy12788        153 SGESKGRGVILKSQYGYEITDVAIMGNDR--YLVAR-TPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       153 ~~~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~~-~d~~i~i~dl~~~~~~~  203 (254)
                      .+.+.    .-+-..+.....|+|+++++  |++.. .++++.++|+.++++..
T Consensus       302 ~t~~v----v~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          302 SVGQT----SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             SSCCE----EECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCCeE----EEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence            88741    11112244688999999875  44455 48999999999998753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.74  E-value=0.004  Score=58.98  Aligned_cols=117  Identities=10%  Similarity=0.079  Sum_probs=70.5

Q ss_pred             cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEE-EEECCCCCEEEEEeC------Cc-EEEEEecCCCcce
Q psy12788         16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTV-ACSSPSGQAVVVGSY------DN-IKLFAWSPSKSVW   86 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~-~a~sPdg~~la~gs~------d~-i~l~d~~~~~~~~   86 (254)
                      ..+.|+.++.|+.+..+| .+|+.+..+....+......+++ ...  .+..+.+++.      ++ ++.+|..+.+..|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            456788899999999999 79999877753201000011211 111  2344445442      43 7888877777777


Q ss_pred             eecCceec---------------------------CCCCcEeEEEEecCCCeEEEeecCC-------------------c
Q psy12788         87 EEQPNKTI---------------------------PNLYTISALSWKRDGSRIACGGLCG-------------------S  120 (254)
Q Consensus        87 ~~~~~~~~---------------------------~~~~~i~~l~~spdG~~la~g~~dg-------------------~  120 (254)
                      ........                           .+......+++.|++.++..++.++                   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            54211000                           0001124688999999999888764                   4


Q ss_pred             EEEEeeeeeeeEee
Q psy12788        121 VELFESVLKRTIWK  134 (254)
Q Consensus       121 v~iwd~~~~~~~~~  134 (254)
                      |..+|..+++.++.
T Consensus       285 v~AlD~~TG~~~W~  298 (677)
T 1kb0_A          285 IVALDPDTGKYKWH  298 (677)
T ss_dssp             EEEECTTTCCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            88889888776653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.71  E-value=0.0024  Score=53.30  Aligned_cols=156  Identities=6%  Similarity=0.112  Sum_probs=91.8

Q ss_pred             CCCCC--EEEEecCC-eEEEEeCCC--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-Cc-EEEE
Q psy12788          6 HPVPP--YALSWPAG-YILAAGSDR--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DN-IKLF   77 (254)
Q Consensus         6 h~~~v--~~l~w~~~-~l~s~s~D~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~-i~l~   77 (254)
                      |+...  ..|.|+.+ +..+.|.++  .|++.| .+|+.++.+..  .    .........++|+.|-.... ++ +.++
T Consensus        39 hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~----~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           39 HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--G----KRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--C----TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEec--C----CccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            44444  67788754 456777765  899999 88999887752  1    22333333345555555553 33 6788


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      |..+.+..      ..++...  ....+++||+.|..+..++.|.++|..+.+....                       
T Consensus       113 D~~t~~~~------~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~-----------------------  161 (262)
T 3nol_A          113 NIRNLRQV------RSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT-----------------------  161 (262)
T ss_dssp             ETTTCCEE------EEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE-----------------------
T ss_pred             ECccCcEE------EEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE-----------------------
Confidence            85433321      1222211  2245567999988888788898888765443211                       


Q ss_pred             eeeEEEEecCC---CceeEEEEecCcEEEEEE-CCCcEEEEeccCCceee
Q psy12788        158 GRGVILKSQYG---YEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       158 ~~~~~l~s~~~---~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~  203 (254)
                         +.+.. .+   ..++.+.+. ++++.++. .++.|.+.|.++|++..
T Consensus       162 ---I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          162 ---ITVTA-HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             ---EECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             ---EEecc-CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence               11100 01   123456665 46655555 47799999999999753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.70  E-value=0.0011  Score=59.76  Aligned_cols=113  Identities=11%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             CEEEEecCC--eEEEEe-------------------CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE--CCCCCE
Q psy12788         10 PYALSWPAG--YILAAG-------------------SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS--SPSGQA   65 (254)
Q Consensus        10 v~~l~w~~~--~l~s~s-------------------~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~--sPdg~~   65 (254)
                      .+.+-|+|+  .+++..                   .+.+|.+|| .+++.+++++...   .......++|  +|+|++
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---~g~~P~~i~f~~~Pdg~~  266 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---ENRMALELRPLHDPTKLM  266 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---TEEEEEEEEECSSTTCCE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---CCCccceeEeeECCCCCE
Confidence            455777774  566653                   368999999 6677777775311   1123445555  999998


Q ss_pred             EEEEeC-----C--cEEEEEecCCCcceeecCceecCC-----------------CCcEeEEEEecCCCeEEEeec-CCc
Q psy12788         66 VVVGSY-----D--NIKLFAWSPSKSVWEEQPNKTIPN-----------------LYTISALSWKRDGSRIACGGL-CGS  120 (254)
Q Consensus        66 la~gs~-----d--~i~l~d~~~~~~~~~~~~~~~~~~-----------------~~~i~~l~~spdG~~la~g~~-dg~  120 (254)
                      +-+++.     .  .+.+|.++.  +.|+......++.                 ......|.+||||++|.+++. .+.
T Consensus       267 aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          267 GFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred             EEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence            777664     3  366666553  4443211110111                 134788999999999988875 678


Q ss_pred             EEEEeee
Q psy12788        121 VELFESV  127 (254)
Q Consensus       121 v~iwd~~  127 (254)
                      |.+||+.
T Consensus       345 VavfdV~  351 (462)
T 2ece_A          345 VRQYDIS  351 (462)
T ss_dssp             EEEEECS
T ss_pred             EEEEEec
Confidence            8888863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.68  E-value=0.0035  Score=52.54  Aligned_cols=153  Identities=10%  Similarity=0.015  Sum_probs=90.0

Q ss_pred             CEEEEecC-CeEEEE-eC--CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEEEEecCC
Q psy12788         10 PYALSWPA-GYILAA-GS--DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAWSPS   82 (254)
Q Consensus        10 v~~l~w~~-~~l~s~-s~--D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l~d~~~~   82 (254)
                      +..++|++ ..|..+ +.  +++|++.| .+|+.++++..  . .+. -...++++  |+.|-.+... + +.++|..+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~-~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--D-DSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--C-TTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--C-CCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence            57999998 455544 33  57899999 88998887752  1 222 22345554  5555555543 3 677884432


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                      +.      ...++.. .-....++|||+++.++..++.|.++|..+.+....                          +.
T Consensus        97 ~v------~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~--------------------------I~  143 (266)
T 2iwa_A           97 SN------IKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK--------------------------HN  143 (266)
T ss_dssp             EE------EEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE--------------------------EE
T ss_pred             cE------EEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE--------------------------EE
Confidence            21      1122111 011245778999988888888999998755432211                          11


Q ss_pred             EEec--CCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788        163 LKSQ--YGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       163 l~s~--~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~  202 (254)
                      +...  .-..++.+.+. +++..+.. .++.|.+-|..++++.
T Consensus       144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred             ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence            1100  00124566666 56655555 4679999999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.67  E-value=0.019  Score=48.43  Aligned_cols=117  Identities=12%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCC-------C--------CCCCEEEEEECC-CCCEEEEEe
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPH-------Y--------KEREFTVACSSP-SGQAVVVGS   70 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~-------~--------~~~~v~~~a~sP-dg~~la~gs   70 (254)
                      .+.+++|+++  .+.++..++.|..||..+..+..+......       +        ....+.+++++| +|+++++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            5778999873  488888899999999655434444211000       0        012478999998 776665544


Q ss_pred             CCcEEEEEecCCCcceeecCceecC--CCCcEeEEEEec-CCCeEEEeec-----------------CCcEEEEeeee
Q psy12788         71 YDNIKLFAWSPSKSVWEEQPNKTIP--NLYTISALSWKR-DGSRIACGGL-----------------CGSVELFESVL  128 (254)
Q Consensus        71 ~d~i~l~d~~~~~~~~~~~~~~~~~--~~~~i~~l~~sp-dG~~la~g~~-----------------dg~v~iwd~~~  128 (254)
                      ..++..+|..  .+..... .....  .......+++.| +|++.++-..                 +|.|..+|...
T Consensus       100 ~~~i~~~d~~--~g~~~~~-~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A          100 YYHLSVVGSE--GGHATQL-ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             TTEEEEECTT--CEECEEE-ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             CCCEEEEeCC--CCEEEEe-cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            4456666632  2211110 00011  123578899999 9987766432                 36677787643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.66  E-value=0.0033  Score=52.57  Aligned_cols=153  Identities=9%  Similarity=-0.042  Sum_probs=88.5

Q ss_pred             EEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCccee
Q psy12788         11 YALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWE   87 (254)
Q Consensus        11 ~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~   87 (254)
                      ..|.|+.+ +.++.+.++.|++.| .+|+.++.+ .  . +. .---.+++..+ ++......++ +.++|..+.+.   
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~-~~-~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~---  128 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R--L-GN-IFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQR---  128 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E--C-TT-CCEEEEEECSS-CEEEEESSSCEEEEEETTTTEE---
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C--C-CC-cceeEEEEeCC-EEEEEEccCCEEEEEECCcCcE---
Confidence            67888775 567888888999999 889887766 2  2 21 11234555433 3333333343 67888443221   


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecC
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQY  167 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  167 (254)
                         ...++....  ....++||+.|..+..++.|.++|..+.+....            +.+.+  .+   ..       
T Consensus       129 ---~~ti~~~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~------------I~V~~--~g---~~-------  179 (268)
T 3nok_A          129 ---ERTTRYSGE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGA------------VQVKL--RG---QP-------  179 (268)
T ss_dssp             ---EEEEECSSC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEE------------EECEE--TT---EE-------
T ss_pred             ---EEEEeCCCc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEE------------EEeCC--CC---cc-------
Confidence               112222221  234457899988888889999999765443311            00000  00   00       


Q ss_pred             CCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788        168 GYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       168 ~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~  202 (254)
                      -..++.+.+. ++++.++. .++.|.+-|.++|++.
T Consensus       180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE
T ss_pred             cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE
Confidence            0134556666 46655555 4779999999999874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.63  E-value=0.017  Score=48.28  Aligned_cols=164  Identities=14%  Similarity=0.044  Sum_probs=93.6

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecC
Q psy12788         17 AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      .+.|..++.++.+..+|..|+....+.     .....+.++...++|.+++ |+.+ ++..+|.. ....|..    . .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~-----~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~-g~~~~~~----~-~  174 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFK-----TKKAIYATPIVSEDGTIYV-GSNDNYLYAINPD-GTEKWRF----K-T  174 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEE-----CSSCCCSCCEECTTSCEEE-ECTTSEEEEECTT-SCEEEEE----E-C
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEc-----CCCceeeeeEEcCCCEEEE-EcCCCEEEEECCC-CCEeEEE----e-c
Confidence            457888888999999995587765543     2233466778888888654 5655 57777754 3434432    1 1


Q ss_pred             CCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeece------eEE---------EEecCCeEEEEeCCCCCceee
Q psy12788         96 NLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGK------FEM---------IYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        96 ~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~---------~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      ....+.++...++|.+++..   +.+..+| ..++..+...      ..+         ....++.+..++. ++   ..
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~  246 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TE  246 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CE
T ss_pred             CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CE
Confidence            23356777888888866544   8888888 4443332110      001         1112334444442 22   11


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      +......+..+..+.+..++.+++++.++.+..+|. +++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE
T ss_pred             eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcE
Confidence            111112222234455665677888888888888885 4543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.62  E-value=0.004  Score=59.56  Aligned_cols=103  Identities=10%  Similarity=-0.059  Sum_probs=57.6

Q ss_pred             CCEEEEec-CC--eEEEE-eC----CCcEEEEe-CCC-CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---c-E
Q psy12788          9 PPYALSWP-AG--YILAA-GS----DRIVTIYE-SDG-RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---N-I   74 (254)
Q Consensus         9 ~v~~l~w~-~~--~l~s~-s~----D~~i~vWd-~~g-~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~-i   74 (254)
                      .+...+|+ |+  .||-+ ..    ..+|+++| .+| +.+..       .-+.....++|+|||+.|+....+   . .
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            56788999 85  45422 22    23599999 556 42200       001123468999999988877654   1 3


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      +||-+......-+...............+.|||||++|+..+.+
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~  291 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS  291 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC
Confidence            45555443321100001111222346788999999999877643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.53  E-value=0.0037  Score=56.21  Aligned_cols=165  Identities=11%  Similarity=-0.001  Sum_probs=93.0

Q ss_pred             EEEecCC-eEEEEeCC------CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-------------
Q psy12788         12 ALSWPAG-YILAAGSD------RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-------------   70 (254)
Q Consensus        12 ~l~w~~~-~l~s~s~D------~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-------------   70 (254)
                      .+...|+ .++++..+      +.+.+.| .+++.+.++.....  ...--+.+.|+|+++.+.+..             
T Consensus       142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT--TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC--CccccceEEECCCCCEEEEccCcCccccccccch
Confidence            3444554 44454444      6799999 77888877752211  112234688899999888875             


Q ss_pred             -------CCcEEEEEecCCCcceeecCceecCCC-CcEeEEEE--ecCCCeEEEeec------CCcEEEEeeeeeeeEee
Q psy12788         71 -------YDNIKLFAWSPSKSVWEEQPNKTIPNL-YTISALSW--KRDGSRIACGGL------CGSVELFESVLKRTIWK  134 (254)
Q Consensus        71 -------~d~i~l~d~~~~~~~~~~~~~~~~~~~-~~i~~l~~--spdG~~la~g~~------dg~v~iwd~~~~~~~~~  134 (254)
                             .|++.+||+...+. ..   ....... .....|.|  +|||+++.+++.      +++|.+|....++    
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~-~~---tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~----  291 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKR-IH---SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK----  291 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEE-EE---EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE----
T ss_pred             hhhhhccCCEEEEEECCCCcE-ee---EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc----
Confidence                   35699999875321 11   1122111 12344555  999999988885      5688777653221    


Q ss_pred             ceeEEEEecCCeEEEEeCCCCCceeeEEEEec------CCCceeEEEEecCcEEEE-EEC-CCcEEEEecc
Q psy12788        135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ------YGYEITDVAIMGNDRYLV-ART-PDTLLLGDLH  197 (254)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~------~~~~i~~i~~~~~~~~~v-~~~-d~~i~i~dl~  197 (254)
                        +..       ..+.++.+... .. .+-..      .+.....|.++++++||- +.. .++|.++|+.
T Consensus       292 --~~~-------~~vIdi~~~~v-~~-~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          292 --WNA-------EKVIEIPAEPL-EG-NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             --EEE-------EEEEEECCEEC-CS-SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             --eeE-------EEEEeCCCccc-cc-cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence              111       11122221100 00 00000      023577899999997653 333 6799999985

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.53  E-value=0.0084  Score=49.46  Aligned_cols=155  Identities=10%  Similarity=0.051  Sum_probs=88.4

Q ss_pred             CEEEEecCCe-EEEEeCC--CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEEEecCCC
Q psy12788         10 PYALSWPAGY-ILAAGSD--RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPSK   83 (254)
Q Consensus        10 v~~l~w~~~~-l~s~s~D--~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~d~~~~~   83 (254)
                      ...|.|+++. ..+.+.+  ..|+..| .+|+.++.+...   .   ........++++.|-... .++ +.++|..+.+
T Consensus        23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---~---~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP---P---PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC---T---TCCEEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC---C---CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc
Confidence            5588898764 5566665  4899999 889998877522   1   222233333455544444 333 6788843322


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      .      ...++...  ....+.+||+.|.++..++.|.++|..+.+....            +.+.+  .+   ..   
T Consensus        97 ~------~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~------------I~V~~--~g---~~---  148 (243)
T 3mbr_X           97 P------RARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS------------IKVTA--GG---RP---  148 (243)
T ss_dssp             E------EEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEE------------EECEE--TT---EE---
T ss_pred             E------EEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE------------EEEcc--CC---cc---
Confidence            1      11222222  2244557899888888889999999765433211            00000  00   00   


Q ss_pred             EecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCceee
Q psy12788        164 KSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~  203 (254)
                          =..++.+.+. +++..+.. .++.|.+-|..+|++..
T Consensus       149 ----~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          149 ----LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             ----CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             ----cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence                0124455555 45655554 57799999999999753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.53  E-value=0.03  Score=47.00  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-CcEEEEEecCCCc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-DNIKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d~i~l~d~~~~~~   84 (254)
                      ..+..++|+++  .+++-..++.|..||.+|+....+.      ....+..++++|+|+++++... ++.+++.+.....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            45788999874  4445456788999997776654432      1245889999999997665543 3434444332232


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ....  ............++..+++..+++-..+|.|..+|..
T Consensus       106 ~~~~--~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~  146 (306)
T 2p4o_A          106 TVET--LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  146 (306)
T ss_dssp             CEEE--EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             eEEE--EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence            2221  1112222234455656666555555568888888864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.50  E-value=0.0062  Score=51.03  Aligned_cols=168  Identities=11%  Similarity=0.067  Sum_probs=94.2

Q ss_pred             EEEEecC-CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeec
Q psy12788         11 YALSWPA-GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQ   89 (254)
Q Consensus        11 ~~l~w~~-~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~   89 (254)
                      .++..++ ..|..++.++.+..+|..|+.+..+.     .....+.++.+.++|.+++..  .++..+| ......|...
T Consensus       140 ~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-----~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          140 ATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-----TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             SCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-----CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEEC
T ss_pred             eeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-----cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEc
Confidence            3344443 46788888899999995588776554     223456778888899876544  6677887 4444445431


Q ss_pred             CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeec----e-----------eEEEEecCCeEEEEeCCC
Q psy12788         90 PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKG----K-----------FEMIYVSPSQVLVKPLSG  154 (254)
Q Consensus        90 ~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~----~-----------~~~~~~~~~~~~v~~~~~  154 (254)
                           .....+.++...++|.+. +++.++.+..+|. .++..+..    .           .......++.+..+|. +
T Consensus       212 -----~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~  283 (330)
T 3hxj_A          212 -----AGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-D  283 (330)
T ss_dssp             -----CSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-T
T ss_pred             -----cCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-C
Confidence                 122457888888888654 5667788888874 22222110    0           0011111224555553 3


Q ss_pred             CCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      +   .........+..+.++.+..++++++++.++.+.+...+
T Consensus       284 g---~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          284 G---TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             S---CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred             C---cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence            3   111111222334556666556677777777777665543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.49  E-value=0.0083  Score=56.88  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCCC--------------------------CCCEEEEEECCCCCEEEEEeCCc-----
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHYK--------------------------EREFTVACSSPSGQAVVVGSYDN-----   73 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~~--------------------------~~~v~~~a~sPdg~~la~gs~d~-----   73 (254)
                      |+.|+.|| .+|+++..+......+.                          ......++++|++.+|.+++.+.     
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            78999999 89998877642100000                          01113678999989888887652     


Q ss_pred             ---------------EEEEEecCCCcceeecCcee----cCCCCcEeEEEEecCCC---eEEEeecCCcEEEEeeeeeee
Q psy12788         74 ---------------IKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRDGS---RIACGGLCGSVELFESVLKRT  131 (254)
Q Consensus        74 ---------------i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spdG~---~la~g~~dg~v~iwd~~~~~~  131 (254)
                                     +..+|..+.+..|.......    .....++.......+|+   .++.++.+|.+.++|..+++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           77888777777886421100    00111222233445786   899999999999999887776


Q ss_pred             E
Q psy12788        132 I  132 (254)
Q Consensus       132 ~  132 (254)
                      +
T Consensus       342 l  342 (689)
T 1yiq_A          342 L  342 (689)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.41  E-value=0.0038  Score=57.95  Aligned_cols=162  Identities=10%  Similarity=0.088  Sum_probs=98.6

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEE-C-CCCCEEEEEeC------------------C-cEEEE
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACS-S-PSGQAVVVGSY------------------D-NIKLF   77 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~-s-Pdg~~la~gs~------------------d-~i~l~   77 (254)
                      .++...+..|.+-| .+.++.+.+..    +....+..+++ + |+++++.+++.                  + .+-+.
T Consensus       105 fVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          105 FMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            45555666799999 66677765532    22235778898 5 99999888742                  1 24566


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC---------------cEEEEeeeee-eeEeeceeEEEE
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG---------------SVELFESVLK-RTIWKGKFEMIY  141 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg---------------~v~iwd~~~~-~~~~~~~~~~~~  141 (254)
                      |..+.+-.|+.    ....  ...-++.+|||+++.+.+.+.               .|.+.|.... .....+++..  
T Consensus       181 D~~t~~v~~qI----~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~--  252 (595)
T 1fwx_A          181 DADKWEVAWQV----LVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE--  252 (595)
T ss_dssp             ETTTTEEEEEE----EESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE--
T ss_pred             ECCCCeEEEEE----EeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE--
Confidence            64433333322    1111  234588999999999999764               3555553211 1111233321  


Q ss_pred             ecCCeEEEEeCCC--CCcee-eEEEEecCCCceeEEEEecCcEEEEEEC--CCcEEEEeccCC
Q psy12788        142 VSPSQVLVKPLSG--ESKGR-GVILKSQYGYEITDVAIMGNDRYLVART--PDTLLLGDLHRN  199 (254)
Q Consensus       142 ~~~~~~~v~~~~~--~~~~~-~~~l~s~~~~~i~~i~~~~~~~~~v~~~--d~~i~i~dl~~~  199 (254)
                      .  +.+.|.|.++  +.  . ...+  ..+.....+.++|+++|+.+..  ++++.+.|+.+.
T Consensus       253 i--~~V~VID~~~~~~~--~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          253 L--NGVKVVDGRKEASS--LFTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             E--TTEEEEECSGGGCC--SSEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             E--CcEEEEeCcccCCc--eeEEEE--ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            2  4588889887  42  1 1112  1244677899999998766544  779999999965

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.38  E-value=0.055  Score=46.45  Aligned_cols=171  Identities=13%  Similarity=0.155  Sum_probs=97.2

Q ss_pred             CCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCC-----CCCEEE-EEECCCCCEEEEEeCCc-EEEEEecCCCcceee
Q psy12788         17 AGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYK-----EREFTV-ACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEE   88 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~-----~~~v~~-~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~   88 (254)
                      .+.|+.++.++.|..+| .+|+.+..+..... ..     ...+.+ .+.  ++..+.+++.++ +..+|....+..|..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEK-DGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccc-cccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            35688888899999999 68998866543110 00     122322 222  345666677774 888887766777754


Q ss_pred             cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeecee-------------E----EEEe--cCCeEEE
Q psy12788         89 QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKF-------------E----MIYV--SPSQVLV  149 (254)
Q Consensus        89 ~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------~----~~~~--~~~~~~v  149 (254)
                      .    .... .......  ++..+.+++.++.+..+|..+++.++....             .    ..+.  .++.+..
T Consensus       130 ~----~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          130 K----VAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSA  202 (376)
T ss_dssp             E----CSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEE
T ss_pred             e----CCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEE
Confidence            1    1111 0111112  244777888899999999887766543211             0    0112  2446777


Q ss_pred             EeCCCCCceeeEEEEecCCCc-----------e-eEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        150 KPLSGESKGRGVILKSQYGYE-----------I-TDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~-----------i-~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +|..++.    ...+...+..           + ....+. ++.+++++.++.+..+|+.+|+..
T Consensus       203 ~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~  262 (376)
T 3q7m_A          203 VLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIM  262 (376)
T ss_dssp             EETTTCC----EEEEEECCC-----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEE
T ss_pred             EECCCCc----EEEEEecccCCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEE
Confidence            7777763    1111111100           1 111222 466777777889999999999854

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.33  E-value=0.0018  Score=55.70  Aligned_cols=119  Identities=5%  Similarity=0.013  Sum_probs=73.8

Q ss_pred             CCCEEEEecC--Ce-EEEEe---CCCcEEEEe-CCCCEEEEeee--cCCC--------C--------------CCCCEEE
Q psy12788          8 VPPYALSWPA--GY-ILAAG---SDRIVTIYE-SDGRVHRIFDY--TAPH--------Y--------------KEREFTV   56 (254)
Q Consensus         8 ~~v~~l~w~~--~~-l~s~s---~D~~i~vWd-~~g~~~~~~~~--~~~~--------~--------------~~~~v~~   56 (254)
                      ..+..+++++  .. .++-+   .++.|.+|| .+|+..+.+..  ....        +              -...+..
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            4568889985  24 35544   678999999 66776654421  0000        0              0123688


Q ss_pred             EEECCCCCEEEEEeCCcEEEEEecCC---Ccceee----cCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         57 ACSSPSGQAVVVGSYDNIKLFAWSPS---KSVWEE----QPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        57 ~a~sPdg~~la~gs~d~i~l~d~~~~---~~~~~~----~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      ++|+|||+.|.++...+-++|.+...   ......    .......+......+++++||+++++...++.|.+||.
T Consensus       200 ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          200 IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            99999999888887765457765421   000000    00011112234567999999999999888999999986

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.29  E-value=0.0062  Score=58.25  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             CEEEEEEC-CCCCEEEEEeC----Cc--EEEEEecCC-CcceeecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         53 EFTVACSS-PSGQAVVVGSY----DN--IKLFAWSPS-KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        53 ~v~~~a~s-Pdg~~la~gs~----d~--i~l~d~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      .+...+|| |||++||-+..    +.  ++++|+... .. ..    ..++  .....++|||||+.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~----~~~~--~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IA----DKVS--GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CC----CCEE--EECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CC----cccc--CceeeEEEecCCCEEEEEEEC
Confidence            67889999 99999986532    22  667775543 21 00    0111  123578999999999888765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.27  E-value=0.0023  Score=60.72  Aligned_cols=110  Identities=10%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCC-----------------------CCC-----------CCCEEEEEECCCC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-----------------------HYK-----------EREFTVACSSPSG   63 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~-----------------------~~~-----------~~~v~~~a~sPdg   63 (254)
                      .++.++.++.++++| .+|+++....+...                       ...           ......++|+|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            578888999999999 89998754432100                       000           0011237899998


Q ss_pred             CEEEEEeC---------------------------------------------Cc-EEEEEecCCCcceeecCceecCCC
Q psy12788         64 QAVVVGSY---------------------------------------------DN-IKLFAWSPSKSVWEEQPNKTIPNL   97 (254)
Q Consensus        64 ~~la~gs~---------------------------------------------d~-i~l~d~~~~~~~~~~~~~~~~~~~   97 (254)
                      .++.++..                                             ++ ++.||..+.+..|+..      ..
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------~~  474 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP------YV  474 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE------ES
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc------CC
Confidence            88776532                                             22 6778877666667531      11


Q ss_pred             CcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         98 YTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        98 ~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                      .++..-.++..|.+++.|+.||.++.||..+++.++.
T Consensus       475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence            2233346777888999999999999999988877654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.19  E-value=6.4e-05  Score=65.85  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP   95 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~   95 (254)
                      +.|++++.|++++.|| .+|+.+..+.     .+.    ...++|++..+++++.|+ ++.||....+..|...    ..
T Consensus        93 ~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~~  159 (369)
T 2hz6_A           93 GILYMGKKQDIWYVIDLLTGEKQQTLS-----SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT----YF  159 (369)
T ss_dssp             --CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSCCCEEE----EE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEec-----CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe----cc
Confidence            3577788899999999 7898875553     221    245678888998988875 8888877666667531    10


Q ss_pred             CCCcEeEEEEecCC---CeEEEeecCCcEEEEeeeeeeeEee
Q psy12788         96 NLYTISALSWKRDG---SRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus        96 ~~~~i~~l~~spdG---~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                         .....++++++   ..+++++.+|.+..||..+++.++.
T Consensus       160 ---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          160 ---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             ---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred             ---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence               12233444443   5677789999999999988877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.17  E-value=0.12  Score=46.07  Aligned_cols=113  Identities=10%  Similarity=0.059  Sum_probs=66.2

Q ss_pred             CCCEEEEecC----CeEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---cEEEEEe
Q psy12788          8 VPPYALSWPA----GYILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---NIKLFAW   79 (254)
Q Consensus         8 ~~v~~l~w~~----~~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~i~l~d~   79 (254)
                      ..|..|+|++    ..|..+-..+.|+.+|. +|. +..+.     ........++|+|+|+++++...+   ...++.+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v~~~~-----~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-VDIKT-----TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-EEEEC-----CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-EEEee-----cCCCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence            3578999996    45666544478999995 554 43332     223458899999999966654321   2112222


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~  129 (254)
                      .. ...+..  ............+++.| +|.++++-..++.|+.+|...+
T Consensus       213 ~~-~~~~~~--~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          213 TR-ASGFTE--RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             CG-GGTTCC--EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             EC-CCCeec--cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            11 111110  01111223456789999 6776666666788888887533

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.15  E-value=0.075  Score=43.35  Aligned_cols=108  Identities=6%  Similarity=-0.074  Sum_probs=62.0

Q ss_pred             CCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCC
Q psy12788          9 PPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSK   83 (254)
Q Consensus         9 ~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~   83 (254)
                      .+..++|++  +.|. +-..++.|.+++.+|.....+. .   ........++++|++..|..+...  ++.+++.+...
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~---~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-R---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-C---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-E---CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence            356888986  3444 4445678999996665333331 1   122467899999986655554433  47777754221


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeecC---CcEEEEe
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC---GSVELFE  125 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d---g~v~iwd  125 (254)
                      ..     ............++++|++.+|..+...   +.|..++
T Consensus       113 ~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A          113 RR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            11     0011122457899999976666555532   4555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.13  E-value=0.078  Score=43.24  Aligned_cols=155  Identities=10%  Similarity=-0.004  Sum_probs=86.5

Q ss_pred             CCCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeC---CcEEEEEec
Q psy12788          8 VPPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSY---DNIKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~---d~i~l~d~~   80 (254)
                      ..+..+++++  ..|. +-...+.|.+++.+|...+.+. .   ........++++|++.. +++...   ..+..++.+
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-D---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-E---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            4678888875  3444 4445678999987665433332 1   11245789999996554 444332   235555643


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCcee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      ....  .   ............++++|++.+|..+. ..+.|..+|.......                           
T Consensus       155 g~~~--~---~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~---------------------------  202 (267)
T 1npe_A          155 GTNR--R---ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---------------------------  202 (267)
T ss_dssp             SCCC--E---EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---------------------------
T ss_pred             CCCc--E---EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---------------------------
Confidence            2111  1   00111234578899999987766555 4567888876322110                           


Q ss_pred             eEEEEecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCcee
Q psy12788        160 GVILKSQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLS  202 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~  202 (254)
                       ..+ .. ......+++. ++.++++. ..+.|.+.|..++++.
T Consensus       203 -~~~-~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          203 -KVL-EG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             -EEE-EC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -EEe-cC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence             000 01 1123455665 35555555 4578999999888754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.91  E-value=0.11  Score=43.38  Aligned_cols=158  Identities=9%  Similarity=-0.021  Sum_probs=84.5

Q ss_pred             CEEEEEECCCCCEEEEEeC---CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeee
Q psy12788         53 EFTVACSSPSGQAVVVGSY---DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVL  128 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~---d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~  128 (254)
                      ....++|+|||.++++.+.   +.++++|..+.+-.-    ....+.......++  ++|+.|..++ .++.+.++|..+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~----~i~l~~~~fgeGi~--~~g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN----IHKMDDSYFGEGLT--LLNEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE----EEECCTTCCEEEEE--EETTEEEEEETTCSEEEEEETTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE----EEecCCCcceEEEE--EeCCEEEEEEecCCEEEEEECCC
Confidence            3679999999876666543   248888865433211    11122222222344  4565555554 567888888655


Q ss_pred             eeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee-eEeC
Q psy12788        129 KRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS-EVLW  206 (254)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~-~~~~  206 (254)
                      .+.+..-                              ..+ .-....+++++ +++++..++++.+.|..+.++. .+.-
T Consensus        96 ~~v~~~i------------------------------~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           96 LSNIKNF------------------------------THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             TEEEEEE------------------------------ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CcEEEEE------------------------------ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            4433110                              001 00012233333 4555556779999999987643 2221


Q ss_pred             CCCCCc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788        207 PDSGRN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       207 ~~~~g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      . ..++      +.-..++....-.|..+++.+|+....++++++.++
T Consensus       145 g-~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          145 K-YNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             E-ETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             C-CCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence            1 1111      111123333334444578888988888888888874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.90  E-value=0.21  Score=44.33  Aligned_cols=113  Identities=7%  Similarity=0.054  Sum_probs=67.5

Q ss_pred             CCEEEEecC---CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C---cEEEEEecC
Q psy12788          9 PPYALSWPA---GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D---NIKLFAWSP   81 (254)
Q Consensus         9 ~v~~l~w~~---~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d---~i~l~d~~~   81 (254)
                      .|..|+++|   ..|..+...+.|+.+|.++..+..+.     ........++|+|+|++|.++.. +   ...++-+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-----~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-----SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-----CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-----cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            578899996   35666555478999997666555543     22345789999999995555443 1   112222211


Q ss_pred             CCcceeecCceecCCCCcEeEEEEec-CCCeEEEeecCCcEEEEeeeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKR-DGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~sp-dG~~la~g~~dg~v~iwd~~~~  129 (254)
                       ...+..  ...+........++++| +|.++++-..++.|..+|...+
T Consensus       213 -~g~~~~--~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~  258 (430)
T 3tc9_A          213 -ESGFKV--ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ  258 (430)
T ss_dssp             -GGTSCS--EEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred             -CCceee--eeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence             111110  01111223457799999 6777766667788999987533

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.82  E-value=0.13  Score=48.50  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=67.6

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCCC--------------------------CCCEEEEEECCCCCEEEEEeCCc-----
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHYK--------------------------EREFTVACSSPSGQAVVVGSYDN-----   73 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~~--------------------------~~~v~~~a~sPdg~~la~gs~d~-----   73 (254)
                      ++.|+.+| .+|+++..+........                          ......++++|++.++.+++.+.     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            58899999 79999877752110000                          00112478999888887776542     


Q ss_pred             ---------------EEEEEecCCCcceeecCceecCC-------CCcEeEEEEecCCC---eEEEeecCCcEEEEeeee
Q psy12788         74 ---------------IKLFAWSPSKSVWEEQPNKTIPN-------LYTISALSWKRDGS---RIACGGLCGSVELFESVL  128 (254)
Q Consensus        74 ---------------i~l~d~~~~~~~~~~~~~~~~~~-------~~~i~~l~~spdG~---~la~g~~dg~v~iwd~~~  128 (254)
                                     +..+|..+.+..|....   .++       ..++.......||+   .++.++.+|.+.++|..+
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~---~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV---TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeec---CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence                           66777667777786421   111       12333334456887   789999999999999887


Q ss_pred             eeeE
Q psy12788        129 KRTI  132 (254)
Q Consensus       129 ~~~~  132 (254)
                      ++.+
T Consensus       334 G~~l  337 (668)
T 1kv9_A          334 GKLI  337 (668)
T ss_dssp             CCEE
T ss_pred             CCEe
Confidence            7765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.67  E-value=0.21  Score=46.99  Aligned_cols=114  Identities=14%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             cCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECC---CCCEEEEEeC------C-cEEEEEecCCCc
Q psy12788         16 PAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSP---SGQAVVVGSY------D-NIKLFAWSPSKS   84 (254)
Q Consensus        16 ~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sP---dg~~la~gs~------d-~i~l~d~~~~~~   84 (254)
                      ..+.|+.++.|+.+..+| .+|+.+..+..... .....+   .-+|   ++ .+.++..      + .+..+|..+.+.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~~~~~~---~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP-AKPYSI---TGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCT-TSSCBC---CSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC-CCccee---cCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            345788888999999999 89998877653110 001111   1122   34 4444432      3 377888777777


Q ss_pred             ceeecCceecCC--------------------------CCcEeEEEEecCCCeEEEeecCCc------------------
Q psy12788         85 VWEEQPNKTIPN--------------------------LYTISALSWKRDGSRIACGGLCGS------------------  120 (254)
Q Consensus        85 ~~~~~~~~~~~~--------------------------~~~i~~l~~spdG~~la~g~~dg~------------------  120 (254)
                      .|........+.                          ......+++.|++.++..++.++.                  
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            775421000000                          011235789999899988887763                  


Q ss_pred             -EEEEeeeeeeeEee
Q psy12788        121 -VELFESVLKRTIWK  134 (254)
Q Consensus       121 -v~iwd~~~~~~~~~  134 (254)
                       |.-+|..+++.++.
T Consensus       271 ~v~AlD~~tG~~~W~  285 (668)
T 1kv9_A          271 SILAIRPDTGKLAWH  285 (668)
T ss_dssp             EEEEECTTTCCEEEE
T ss_pred             eEEEEcCCCCceeeE
Confidence             88888888776653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.59  E-value=0.25  Score=41.89  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee
Q psy12788          8 VPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE   87 (254)
Q Consensus         8 ~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~   87 (254)
                      ..+.+++++++.+..++.++.|..-+-.|+.-+.+.. .. .++..+..+++.+++..++++....+  |.-......|+
T Consensus        80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~-~~-~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~  155 (327)
T 2xbg_A           80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL-DP-KLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQ  155 (327)
T ss_dssp             CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCC-CT-TCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEE
T ss_pred             ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECcc-cc-CCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCE
Confidence            3577888887666666777755443223443332211 11 23456788888888888877653333  33223455686


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeEEEeecC
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRIACGGLC  118 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~~d  118 (254)
                      ..   ..+....+.++++.|+|++++++...
T Consensus       156 ~~---~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          156 AL---VQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             EE---ECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             Ee---ecCCCcceEEEEEcCCCcEEEEECCC
Confidence            42   22334578999999999988876543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.53  E-value=0.27  Score=40.66  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             ccCCCCCEEEEecC--CeEEE-EeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEe
Q psy12788          4 VQHPVPPYALSWPA--GYILA-AGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~--~~l~s-~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~   79 (254)
                      .+-...+..++|+|  +.|.+ .-.++.|...|.+|+.++.+...   +. ...-.+++.++|.++++.-.+ ++.++++
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~---g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD---FV-KDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS---SC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC---CC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            34445789999987  34554 55577788889779988887532   22 357789999999865553233 4667777


Q ss_pred             cCCCcceeecCce----ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         80 SPSKSVWEEQPNK----TIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        80 ~~~~~~~~~~~~~----~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ......+......    ..+.......|+|+|+++.|.++.......+|...
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            6544322110010    11223457899999999988888887777777653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.51  E-value=0.18  Score=46.60  Aligned_cols=113  Identities=13%  Similarity=0.031  Sum_probs=66.0

Q ss_pred             CeEEEEeC------CCcEEEEe-CCCCEEEEeeecCCCCC------C-----------------------------CCEE
Q psy12788         18 GYILAAGS------DRIVTIYE-SDGRVHRIFDYTAPHYK------E-----------------------------REFT   55 (254)
Q Consensus        18 ~~l~s~s~------D~~i~vWd-~~g~~~~~~~~~~~~~~------~-----------------------------~~v~   55 (254)
                      +.++.++.      |+.|+.+| .+|+.+..+....  ..      +                             ....
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~--~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~  238 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG--SDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG  238 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS--CHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCS
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCC--CccccccCcccccccccccccccccccCcccceecCCCCeee
Confidence            45666554      78999999 7899887765211  00      0                             0012


Q ss_pred             EEEECCCCCEEEEEeC------------C-----cEEEEEecCCCcceeecCcee-c----CCCCcEeEEEEecCCC---
Q psy12788         56 VACSSPSGQAVVVGSY------------D-----NIKLFAWSPSKSVWEEQPNKT-I----PNLYTISALSWKRDGS---  110 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~------------d-----~i~l~d~~~~~~~~~~~~~~~-~----~~~~~i~~l~~spdG~---  110 (254)
                      .++++|+..++..+..            |     .+..+|..+.+..|....... .    ....++ -+.-.+||+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEE
Confidence            3567776666655542            1     266777666667776421100 0    011222 233446885   


Q ss_pred             eEEEeecCCcEEEEeeeeeeeEe
Q psy12788        111 RIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus       111 ~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      .++.++.+|.+.++|..+++.++
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEe
Confidence            67788999999999987776554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.40  E-value=0.49  Score=45.08  Aligned_cols=167  Identities=7%  Similarity=-0.003  Sum_probs=99.4

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecC--CCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCC
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTA--PHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSK   83 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~--~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~   83 (254)
                      ..|.++..+++ .|-.|+.++-|..|+........+....  ..-....|.++..+++|.+.+ |+.+ ++..++..  .
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~--~  386 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPI--T  386 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTT--T
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCC--C
Confidence            45778877764 6777888778999984332222222110  000234699999999998775 5655 68777743  2


Q ss_pred             cceeecCcee-----cCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         84 SVWEEQPNKT-----IPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        84 ~~~~~~~~~~-----~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ..+.......     .-....|.++...++|+.|.+|+.++.+..+|..+++...                +....+   
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~----------------~~~~~~---  447 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN----------------FNQRNS---  447 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE----------------ECTTTS---
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE----------------eecCCC---
Confidence            2222110000     0013469999999999856678887888888865443221                000000   


Q ss_pred             eeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceee
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~  203 (254)
                       .     .....|.++...+++.+.+++. +.+.++|..+++...
T Consensus       448 -~-----l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          448 -Q-----LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             -C-----CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             -C-----cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence             0     1234577777776777777776 678888887776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.37  E-value=0.054  Score=50.28  Aligned_cols=149  Identities=13%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             CCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc----------------EEEEEecCC------
Q psy12788         26 DRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN----------------IKLFAWSPS------   82 (254)
Q Consensus        26 D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~----------------i~l~d~~~~------   82 (254)
                      ++.+-+.| .+.+...++...   +   ....++++|||+++.+.+.+.                +.+.|+...      
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             CceEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence            45688889 666666665421   2   234578999999998887553                444443210      


Q ss_pred             -Ccce-------eecC------ceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeE
Q psy12788         83 -KSVW-------EEQP------NKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQV  147 (254)
Q Consensus        83 -~~~~-------~~~~------~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  147 (254)
                       +..+       ....      ...++-......+.+||||+++.+++ .+.+|.++|+...+...+++.     .+.  
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-----~~~--  320 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-----DPR--  320 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----CGG--
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-----Ccc--
Confidence             0000       0000      00111112456799999999877766 678899999864321111110     000  


Q ss_pred             EEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                                 ..+......|....-++|++++. |++..-|+++.+||+..
T Consensus       321 -----------~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          321 -----------SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -----------GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             -----------cceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                       11122223456678889999885 33455588999999987

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.26  E-value=0.13  Score=47.82  Aligned_cols=110  Identities=13%  Similarity=0.082  Sum_probs=66.3

Q ss_pred             CeEEEEe------CCCcEEEEe-CCCCEEEEeeecCCCCCC-----------------------------------CCEE
Q psy12788         18 GYILAAG------SDRIVTIYE-SDGRVHRIFDYTAPHYKE-----------------------------------REFT   55 (254)
Q Consensus        18 ~~l~s~s------~D~~i~vWd-~~g~~~~~~~~~~~~~~~-----------------------------------~~v~   55 (254)
                      +.++.++      .++.|+.+| .+|+++-.+....  ...                                   ....
T Consensus       167 g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~--~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~  244 (599)
T 1w6s_A          167 DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG--PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWG  244 (599)
T ss_dssp             TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS--CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCS
T ss_pred             CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC--CccccccccccccccccccccccccccCCCcceecCCCcccc
Confidence            4555554      378999999 8899987765221  000                                   0011


Q ss_pred             EEEECCCCCEEEEEeCC-----------------cEEEEEecCCCcceeecCceecCCC--------CcEeEEEEe-cCC
Q psy12788         56 VACSSPSGQAVVVGSYD-----------------NIKLFAWSPSKSVWEEQPNKTIPNL--------YTISALSWK-RDG  109 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~d-----------------~i~l~d~~~~~~~~~~~~~~~~~~~--------~~i~~l~~s-pdG  109 (254)
                      ..+++|+..+|..+..+                 .+..+|..+.+..|....   .++.        .++. +... .||
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~---~~~d~wd~d~~~~p~l-~d~~~~~G  320 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK---TPHDEWDYAGVNVMML-SEQKDKDG  320 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES---STTCSSCCCCCCCCEE-EEEECTTS
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec---CCCccccccCCCccEE-EeccccCC
Confidence            45677777776665433                 466777666667775421   1111        1221 3333 678


Q ss_pred             ---CeEEEeecCCcEEEEeeeeeeeEe
Q psy12788        110 ---SRIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus       110 ---~~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                         +.++.++.+|.+.++|..+++.++
T Consensus       321 ~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          321 KARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             CEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cEEEEEEEECCCcEEEEEECCCCCEee
Confidence               567888899999999987776654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.23  E-value=0.63  Score=44.32  Aligned_cols=163  Identities=9%  Similarity=-0.026  Sum_probs=93.3

Q ss_pred             CCCEEEEecC-Ce-EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCc
Q psy12788          8 VPPYALSWPA-GY-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~-~~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~   84 (254)
                      ..|.++..++ .. |..|+.++-+..+| .+++ ...+...........|.++..+++|.+.+.. .+++.+++..  ..
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~--~~  481 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSALVRFNPE--QR  481 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSCEEEEETT--TT
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCceeEEeCC--CC
Confidence            4577887765 45 88888877899999 4454 3333211000123579999999999876544 4777788743  33


Q ss_pred             ceeecCce---ecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeE
Q psy12788         85 VWEEQPNK---TIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGV  161 (254)
Q Consensus        85 ~~~~~~~~---~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  161 (254)
                      .+......   .......|.++...++|++.+.. . +.+..||...++..        +...       ....      
T Consensus       482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~~--------~~~~-------~~~~------  538 (795)
T 4a2l_A          482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDIQ--------KASI-------LPVS------  538 (795)
T ss_dssp             EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEEE--------ECCC-------SCSC------
T ss_pred             eEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeEE--------EecC-------CCCC------
Confidence            33321110   00112579999999999876644 4 56778886433320        0000       0000      


Q ss_pred             EEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCce
Q psy12788        162 ILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       162 ~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~  201 (254)
                         ......|.+|....++.+.+++.. .+..+|..+++.
T Consensus       539 ---~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          539 ---NVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI  574 (795)
T ss_dssp             ---GGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE
T ss_pred             ---CCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE
Confidence               011234666666666666666554 677777666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.21  E-value=0.38  Score=41.39  Aligned_cols=164  Identities=11%  Similarity=0.124  Sum_probs=96.2

Q ss_pred             CCCEEEEecC--CeEEEEe-CCCcEEEEeCC-CCEEEEeeecCC---CCCCCCEEEEEE---CCCCCEEEEEeC------
Q psy12788          8 VPPYALSWPA--GYILAAG-SDRIVTIYESD-GRVHRIFDYTAP---HYKEREFTVACS---SPSGQAVVVGSY------   71 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~s~s-~D~~i~vWd~~-g~~~~~~~~~~~---~~~~~~v~~~a~---sPdg~~la~gs~------   71 (254)
                      .-+.+.+|++  ..|..++ ..++|..||.. +.... +....-   ......+..+.|   .|+|+++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-EecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3467889986  4555555 68999999965 43332 221100   000124689999   799988886331      


Q ss_pred             -------C-cEEEEEec---CCCcceeecCceec-C--------CCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeeee
Q psy12788         72 -------D-NIKLFAWS---PSKSVWEEQPNKTI-P--------NLYTISALSWKRDGSRIACGGLC-GSVELFESVLKR  130 (254)
Q Consensus        72 -------d-~i~l~d~~---~~~~~~~~~~~~~~-~--------~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~  130 (254)
                             + .+..+|..   +.+..|... .... .        .......++.-++|+..++++.. +.|...+.    
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d-L~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p----  166 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVN-FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA----  166 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEE-SHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT----
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEec-CccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC----
Confidence                   3 37778876   445544321 0000 0        11247899999999999999877 77644442    


Q ss_pred             eEeeceeEEEEecCC-eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccC
Q psy12788        131 TIWKGKFEMIYVSPS-QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHR  198 (254)
Q Consensus       131 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~  198 (254)
                                   ++ .+.+|.+..+.        .....-.+.|++.|++. +++..+.+.+.-.|+.+
T Consensus       167 -------------dG~~~~~~~~~~~~--------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          167 -------------DGKTVSTFAWESGN--------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -------------TSCCEEEEEECCCC--------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             -------------CCCEEeeeeecCCC--------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence                         11 12333332211        00112367899998885 45555677888889884

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.18  E-value=0.46  Score=39.74  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             CCEEEEecC--CeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCC-CCCEEEEEECC-CCCEEEEEeCC------------
Q psy12788          9 PPYALSWPA--GYILAAGSDRIVTIYESDGRVHRIFDYTAPHYK-EREFTVACSSP-SGQAVVVGSYD------------   72 (254)
Q Consensus         9 ~v~~l~w~~--~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~-~~~v~~~a~sP-dg~~la~gs~d------------   72 (254)
                      .|..+++++  ..|..+...+.+..+|.++..+..+..... +. ......++++| +|++.++-...            
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD-GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEET-TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCC-CCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            578899985  467777555668888855433333321111 11 13478899999 99987764321            


Q ss_pred             ----cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788         73 ----NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV  127 (254)
Q Consensus        73 ----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~  127 (254)
                          .-+|+.++........    ..........|+|+|||++|.++ +..+.|..|+..
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~----~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTL----LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEE----EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             ccCCCceEEEEeCCCCEEEE----eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence                1234433332222111    01111235679999999976655 556889999865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.12  E-value=0.25  Score=40.98  Aligned_cols=155  Identities=10%  Similarity=-0.013  Sum_probs=83.5

Q ss_pred             EEEEEECCCCCEEEEEeCC---cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeee
Q psy12788         54 FTVACSSPSGQAVVVGSYD---NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLK  129 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~  129 (254)
                      ...+.|+ ++.++.+.+.+   .++.+|..+.+-.-      ...-..........++|..|...+ .++.+.+||..+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~------~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ------QIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE------EEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE------EEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence            4789999 67766666543   48888865433211      111122344444555666666555 4677777776554


Q ss_pred             eeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc-EEEEEECCCcEEEEeccCCcee-eEeCC
Q psy12788        130 RTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLLS-EVLWP  207 (254)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~~-~~~~~  207 (254)
                      +.+..-++                              +.+=..++  +++ ++++...+++|.+.|..+.++. .+.-.
T Consensus       118 ~~~~ti~~------------------------------~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A          118 RQVRSFNY------------------------------DGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             CEEEEEEC------------------------------SSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             cEEEEEEC------------------------------CCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            43321100                              01101222  233 3444444667888898887643 22211


Q ss_pred             CCCCc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788        208 DSGRN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       208 ~~~g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                       ..|+      +.-..++...+-.|...++.+|+....++++++.++
T Consensus       166 -~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          166 -AHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             -ETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred             -cCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence             1111      222234445555566677888888888888888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.07  E-value=1  Score=42.73  Aligned_cols=190  Identities=11%  Similarity=0.076  Sum_probs=108.2

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeec-----CCCCCCCCEEEEEECCCCCEEEEEe-CCcEEEEEec
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYT-----APHYKEREFTVACSSPSGQAVVVGS-YDNIKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~-----~~~~~~~~v~~~a~sPdg~~la~gs-~d~i~l~d~~   80 (254)
                      ..|.++..+++ .|-.|+.++-|..++........+.+.     ...-....|.+++.+++|.+.+ |+ .+++..++..
T Consensus       313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  391 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-GTDGGGINVFENG  391 (781)
T ss_dssp             SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE-EEBSSCEEEEETT
T ss_pred             CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE-EeCCCcEEEEECC
Confidence            45777777763 577777777788898443333333211     0001235699999999998764 55 4467777732


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------ceeEEEEecC--------
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------GKFEMIYVSP--------  144 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------~~~~~~~~~~--------  144 (254)
                        ...+.............|.++...++|.+.+ |+.++.+..+|..+++...-        ..+.+..-.+        
T Consensus       392 --~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~  468 (781)
T 3v9f_A          392 --KRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH  468 (781)
T ss_dssp             --EEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET
T ss_pred             --CCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC
Confidence              2222110000011235799999988887665 67767788888755443211        0111111111        


Q ss_pred             CeEEEEeCCCCCceeeEEEEecC-----CCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQY-----GYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~-----~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      ..+..++..++.   ...+....     ...|.+|....++.+.+++..+.+..+|..++++..+
T Consensus       469 ~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  530 (781)
T 3v9f_A          469 AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF  530 (781)
T ss_dssp             TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred             CceEEEeCCCCe---EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence            344555555542   11111111     3468888888888899988877888899887765443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.02  E-value=0.47  Score=38.91  Aligned_cols=159  Identities=6%  Similarity=-0.048  Sum_probs=85.8

Q ss_pred             CCEEEEEECCCCCEEEEEeCC---cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee
Q psy12788         52 REFTVACSSPSGQAVVVGSYD---NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV  127 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~  127 (254)
                      .-...+.|++ +.++.+.+.+   .++.+|..+.+-.      ....-..........++|..|...+ .++.+.+||..
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~------~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL------QRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE------EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE------EEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence            3467899997 6666665553   4888886543321      1111122233344444555555443 56778788865


Q ss_pred             eeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee-eEeC
Q psy12788        128 LKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS-EVLW  206 (254)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~-~~~~  206 (254)
                      +.+.+..-+                              ++.+=..++.. .++++++..+++|.+.|..+.++. .+.-
T Consensus        94 tl~~~~ti~------------------------------~~~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           94 TLTPRARFR------------------------------YPGEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             TTEEEEEEE------------------------------CSSCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             cCcEEEEEe------------------------------CCCCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            544332110                              01110122212 234555555778889999887642 2221


Q ss_pred             CCCCC------ceeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecCC
Q psy12788        207 PDSGR------NEKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIPT  249 (254)
Q Consensus       207 ~~~~g------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  249 (254)
                      . ..|      ++.-..++...+-+|...++.+|+....++++++.+.-
T Consensus       143 ~-~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~  190 (243)
T 3mbr_X          143 T-AGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQA  190 (243)
T ss_dssp             E-ETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred             c-cCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence            1 111      12222345555566666778888888888888888763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.93  E-value=0.65  Score=39.28  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             CCCCEEEEec-CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcE-EEEEecCCCc
Q psy12788          7 PVPPYALSWP-AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNI-KLFAWSPSKS   84 (254)
Q Consensus         7 ~~~v~~l~w~-~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i-~l~d~~~~~~   84 (254)
                      +..++.+.+. ++.++.++.++.|..-+-.|+.-+.+.   . +....+..++++|++.+++++....+ +-.|  ....
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~---~-~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d--~gG~  194 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV---Q-EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE--PGQT  194 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE---C-SCCCCEEEEEECTTSCEEEEETTSSEEEEEC--TTCS
T ss_pred             CCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee---c-CCCcceEEEEEcCCCcEEEEECCCcEEEEeC--CCCC
Confidence            3456777764 445555556665533222354443332   1 34457899999999999988765554 2222  2245


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF  124 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iw  124 (254)
                      .|+..   .......+..+.++|+|+.+++ +.+|.+...
T Consensus       195 tW~~~---~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s  230 (327)
T 2xbg_A          195 AWEPH---NRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFS  230 (327)
T ss_dssp             SCEEE---ECCSSSCEEEEEECTTSCEEEE-ETTTEEEEE
T ss_pred             ceeEC---CCCCCCccceeEECCCCCEEEE-eCCceEEEe
Confidence            67541   2233457889999999987755 457777665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.86  E-value=0.59  Score=43.23  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             EEEECCCCCEEEEEeC--------------------C-----cEEEEEecCCCcceeecCceecCCC--------CcEeE
Q psy12788         56 VACSSPSGQAVVVGSY--------------------D-----NIKLFAWSPSKSVWEEQPNKTIPNL--------YTISA  102 (254)
Q Consensus        56 ~~a~sPdg~~la~gs~--------------------d-----~i~l~d~~~~~~~~~~~~~~~~~~~--------~~i~~  102 (254)
                      ..+++|+..+|.++..                    |     .+..+|..+.+..|....   .++.        .++. 
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~---~~~d~wd~~~~~~p~l-  325 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQH---TPNDAWDFSGNNELVL-  325 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEES---STTCCSCCCCCCCCEE-
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeC---CCCCcccccCCCCcEE-
Confidence            4677787777665542                    2     366777667777786421   1111        1221 


Q ss_pred             EEEe-cCCC---eEEEeecCCcEEEEeeeeeeeEe
Q psy12788        103 LSWK-RDGS---RIACGGLCGSVELFESVLKRTIW  133 (254)
Q Consensus       103 l~~s-pdG~---~la~g~~dg~v~iwd~~~~~~~~  133 (254)
                      +... .||+   .++.++.+|.+.++|..+++.++
T Consensus       326 ~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          326 FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence            2222 5785   78889999999999987766553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.83  E-value=0.35  Score=40.27  Aligned_cols=155  Identities=11%  Similarity=0.080  Sum_probs=82.8

Q ss_pred             EEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeee
Q psy12788         54 FTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRT  131 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~  131 (254)
                      ...+.|+. +.++.+.+.+ .++.+|..+.+-.-    .. ++.  ........++|..|...+ .++.+.+||..+.+.
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~----~~-l~~--~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVW----ME-RLG--NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSE----EE-ECT--TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEe----EE-CCC--CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence            57889984 5566666655 48888865433211    11 222  233333445655555444 467777787655443


Q ss_pred             EeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee-eEeCCCCC
Q psy12788        132 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS-EVLWPDSG  210 (254)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~-~~~~~~~~  210 (254)
                      +..-.                              ++.+=..++..+ .+++++..+++|.+.|.++.++. .+.-. ..
T Consensus       129 ~~ti~------------------------------~~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~  176 (268)
T 3nok_A          129 ERTTR------------------------------YSGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVK-LR  176 (268)
T ss_dssp             EEEEE------------------------------CSSCCCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECE-ET
T ss_pred             EEEEe------------------------------CCCceeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeC-CC
Confidence            32110                              011112233222 34555555778999999987653 22221 11


Q ss_pred             Cc------eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeeecC
Q psy12788        211 RN------EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVRIP  248 (254)
Q Consensus       211 g~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (254)
                      +.      +.-..++...+-.|...++.+|+....++++++.++
T Consensus       177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred             CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence            11      222224444445555577888888778888888775

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.55  E-value=0.18  Score=46.74  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=21.4

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeee
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDY   44 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~   44 (254)
                      .++.++.++.++++| .+|+.+..+..
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEECCCceEEEEECCCCCEeccccc
Confidence            577888999999999 88998876653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.45  E-value=1.8  Score=40.99  Aligned_cols=165  Identities=7%  Similarity=0.023  Sum_probs=89.0

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeee-------cC---CCCCCCCEEEEEECCCCCEEEEEe-CCcEE
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDY-------TA---PHYKEREFTVACSSPSGQAVVVGS-YDNIK   75 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~-------~~---~~~~~~~v~~~a~sPdg~~la~gs-~d~i~   75 (254)
                      ..|.++.-+++ .|..|+..+-+.++|........+..       ..   ..-....|.++..+++|.+.+ |+ .+++.
T Consensus       258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~  336 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWGGGIN  336 (781)
T ss_dssp             CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBSSCEE
T ss_pred             ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecCCeEE
Confidence            45777777653 56677765668888844333322211       00   001235799999999998765 55 44687


Q ss_pred             EEEecCCCcceeecCc------eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEE
Q psy12788         76 LFAWSPSKSVWEEQPN------KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLV  149 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~------~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v  149 (254)
                      .++...  ..+.....      ...-....|.++...++|++. .|+.++.+..||...++...   |    ..+     
T Consensus       337 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~---~----~~~-----  401 (781)
T 3v9f_A          337 FISNAP--PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY---N----KEN-----  401 (781)
T ss_dssp             EECSSC--CSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC---C------------
T ss_pred             EeCCCC--CcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE---c----cCC-----
Confidence            777432  22211000      000012469999998888755 56767778888865433211   0    000     


Q ss_pred             EeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        150 KPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       150 ~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                           .         +.....|.++....++.+.++..++.+..+|..++++.
T Consensus       402 -----~---------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          402 -----R---------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             ----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred             -----C---------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence                 0         01123456666655566666666566666666665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.29  E-value=0.17  Score=43.56  Aligned_cols=116  Identities=8%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             CCEEEEe---cCC-eEEEEeC--------------CCcEEEEe-C---CCCEEEEeeecC--CCC-------CCCCEEEE
Q psy12788          9 PPYALSW---PAG-YILAAGS--------------DRIVTIYE-S---DGRVHRIFDYTA--PHY-------KEREFTVA   57 (254)
Q Consensus         9 ~v~~l~w---~~~-~l~s~s~--------------D~~i~vWd-~---~g~~~~~~~~~~--~~~-------~~~~v~~~   57 (254)
                      .+..|.|   +++ .|+.+..              +..+..+| .   +|+.+...+...  + +       .......+
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~-~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD-EFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH-HHHHHHSSCCEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccc-cccccccccccCCcee
Confidence            3589999   563 4444332              57788899 5   477665443210  0 0       11248899


Q ss_pred             EECCCCCEEEEEeCC-cEEEEEecCCCcc---eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         58 CSSPSGQAVVVGSYD-NIKLFAWSPSKSV---WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        58 a~sPdg~~la~gs~d-~i~l~d~~~~~~~---~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      +..|+|+..+++++. .. ||.++.....   |... ..........+.|+++|||+.|++....|.+.-+|+.
T Consensus       143 avD~~GnaYVt~s~~~~~-I~rV~pdG~~~~~~~~~-~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          143 AQDRDGNSYVAFALGMPA-IARVSADGKTVSTFAWE-SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EECTTSCEEEEEEESSCE-EEEECTTSCCEEEEEEC-CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EECCCCCEEEeCCCCCCe-EEEEeCCCCEEeeeeec-CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            999999999998877 53 6666554331   2110 0001112347789999999998888779999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.27  E-value=0.1  Score=48.15  Aligned_cols=25  Identities=8%  Similarity=0.097  Sum_probs=20.1

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFD   43 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~   43 (254)
                      .++.++.++.+.+.| .+|+.+..+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeec
Confidence            366788899999999 7899887664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.09  E-value=0.25  Score=42.64  Aligned_cols=107  Identities=17%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCC-EEEEeeecCCCCCCCCEEEEEECCC----CCEEEEEeC--------Cc
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGR-VHRIFDYTAPHYKEREFTVACSSPS----GQAVVVGSY--------DN   73 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~-~~~~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs~--------d~   73 (254)
                      ..+..++|.|+ .|+.+-.++.|++++.+|+ .+..+. ... ........++|+|+    |.+.++-+.        ++
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~-v~~-~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFD-VAN-VGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECC-CCC-STTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccc-eee-cCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45788999875 5666777799999987775 222221 111 12346889999997    555554432        23


Q ss_pred             EEEEEecCCCcceee-cCc-eecC--CCCcEeEEEEecCCCeEEEee
Q psy12788         74 IKLFAWSPSKSVWEE-QPN-KTIP--NLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        74 i~l~d~~~~~~~~~~-~~~-~~~~--~~~~i~~l~~spdG~~la~g~  116 (254)
                      |..++.......... ... ..++  .......|+|.|||+++++-+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            444554322111110 000 0111  112356799999998777643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.09  E-value=0.082  Score=49.51  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=64.6

Q ss_pred             CeEEEEeCCC-----------cEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecC
Q psy12788         18 GYILAAGSDR-----------IVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSP   81 (254)
Q Consensus        18 ~~l~s~s~D~-----------~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~   81 (254)
                      ..++.||.+.           .+.+|| .+++  .+..+..    .+.....++++.++|+++++|+.+  .+++||.. 
T Consensus       199 ~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-  273 (656)
T 1k3i_A          199 RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-  273 (656)
T ss_dssp             EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-
T ss_pred             EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----CCCCccccccCCCCCCEEEeCCCCCCceEEecCc-
Confidence            3566776543           578888 4443  2222211    222334567889999999999865  37788854 


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cC-----CcEEEEeeeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LC-----GSVELFESVLK  129 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~d-----g~v~iwd~~~~  129 (254)
                       ...|....  ..+....-.+++..|||++++.|+ .+     ..+.+||..++
T Consensus       274 -t~~W~~~~--~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          274 -SDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             -GTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             -CCceeECC--CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence             56786532  122111223566678999999999 34     56899997543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.23  E-value=3.1  Score=37.71  Aligned_cols=118  Identities=6%  Similarity=0.006  Sum_probs=64.1

Q ss_pred             CCEEEEecC---CeEEEEeC-CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEE-------CCCCCEEEEEeCC-----
Q psy12788          9 PPYALSWPA---GYILAAGS-DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACS-------SPSGQAVVVGSYD-----   72 (254)
Q Consensus         9 ~v~~l~w~~---~~l~s~s~-D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~-------sPdg~~la~gs~d-----   72 (254)
                      .+..|+++|   +.|..+-. .+.|++.|..++.+.++- ............++|       +++|++|.++...     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            477899997   24554443 356888896665565552 111012235889999       9999955554432     


Q ss_pred             -cEEEEEecCCC-cceeecC-ceecCCCCcEeEEEEecCC-CeEEEeecCCcEEEEeee
Q psy12788         73 -NIKLFAWSPSK-SVWEEQP-NKTIPNLYTISALSWKRDG-SRIACGGLCGSVELFESV  127 (254)
Q Consensus        73 -~i~l~d~~~~~-~~~~~~~-~~~~~~~~~i~~l~~spdG-~~la~g~~dg~v~iwd~~  127 (254)
                       ...++-+.... ..+.... ...+..-.....++.+|++ .++++--.++.|..+|..
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence             12233322111 1221000 0111111234678999954 545555567789999976

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.20  E-value=0.57  Score=43.71  Aligned_cols=74  Identities=22%  Similarity=0.379  Sum_probs=47.8

Q ss_pred             EEEECC-CCCEEEEEeCCc----------EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEE
Q psy12788         56 VACSSP-SGQAVVVGSYDN----------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVEL  123 (254)
Q Consensus        56 ~~a~sP-dg~~la~gs~d~----------i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~i  123 (254)
                      .+++.| +|++++.|+.+.          ..++-++.....|........+......++++.+||++++.|+. ++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567778 899999987431          13455556677776421111122223446788999999999994 457888


Q ss_pred             Eeeeee
Q psy12788        124 FESVLK  129 (254)
Q Consensus       124 wd~~~~  129 (254)
                      ||..++
T Consensus       270 yd~~t~  275 (656)
T 1k3i_A          270 YDSSSD  275 (656)
T ss_dssp             EEGGGT
T ss_pred             ecCcCC
Confidence            887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.16  E-value=2.1  Score=35.46  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=40.9

Q ss_pred             CCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCc--EEEEee
Q psy12788         52 REFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGS--VELFES  126 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~--v~iwd~  126 (254)
                      .....++|+|+|+++++...+ +|..+|  ..... .    ........+..+++.|||+++++......  |..+|.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d--~~g~~-~----~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSIT--PDGNQ-Q----IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEC--TTCCE-E----EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEEC--CCCce-E----EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            457789999999977765444 355555  32221 1    11122346889999999997665443333  444553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.08  E-value=2.4  Score=35.80  Aligned_cols=109  Identities=9%  Similarity=0.039  Sum_probs=59.8

Q ss_pred             CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC--C-cEEEEEecCC
Q psy12788          9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY--D-NIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~--d-~i~l~d~~~~   82 (254)
                      .+..+++++  . ..++-...+.|.+.+.+|.....+. .   ........++++|.+..|.....  . +|...+.+  
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--  153 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-W---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--  153 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE-e---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--
Confidence            345565553  3 3445455678888887775444432 1   22345789999997555444442  2 35454432  


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      .....   ..........+.|+|+|++..|..+.. .+.|..+|.
T Consensus       154 G~~~~---~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          154 GSSRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             SCSCE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCeE---EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            11100   000112345689999998777766654 455666654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.88  E-value=0.39  Score=44.64  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=20.4

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFD   43 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~   43 (254)
                      .++.++.++.+.+.| .+|+.+....
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCcEEEEEECCCCCEeeccc
Confidence            466788999999999 7899886654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.88  E-value=3.2  Score=36.64  Aligned_cols=114  Identities=8%  Similarity=-0.017  Sum_probs=61.6

Q ss_pred             CCEEEEecC-C-eEEEE-eCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEEecCC
Q psy12788          9 PPYALSWPA-G-YILAA-GSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~-~-~l~s~-s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d~~~~   82 (254)
                      .+..+++++ + .|..+ ..++.|+.+|. +|.....+. ..  +....-..++|+|+|+.|-++.. . .|+.++++..
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~--~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM--DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC--SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc--CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            355667766 2 44444 35667888885 476533331 11  12223457999999995545443 3 4777776532


Q ss_pred             Ccceeec-Ccee-------------cCCCCcEeEEEE---------ecCCCeEEEeecCCcEEEEe
Q psy12788         83 KSVWEEQ-PNKT-------------IPNLYTISALSW---------KRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        83 ~~~~~~~-~~~~-------------~~~~~~i~~l~~---------spdG~~la~g~~dg~v~iwd  125 (254)
                      ....... ....             .........+++         .++|.++++-...+.|+.++
T Consensus       306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            2211000 0000             001124567888         67777776666667777776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.80  E-value=0.4  Score=45.41  Aligned_cols=156  Identities=9%  Similarity=-0.011  Sum_probs=79.5

Q ss_pred             CEEEEec--CC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeC--CcEEEEEecCCC
Q psy12788         10 PYALSWP--AG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSY--DNIKLFAWSPSK   83 (254)
Q Consensus        10 v~~l~w~--~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~--d~i~l~d~~~~~   83 (254)
                      +..|+++  .. ++++-...+.|.+.+.+|.....+. .   ........++++|.+.. +.+-..  .+|..++.+...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-R---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-C---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-e---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            4556655  33 3444455678999997776554442 1   11234568899996544 443322  235444432111


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                      ..     ..........+.|+|+|++.+|..+. ..+.|..+|+....                            .+.+
T Consensus       531 ~~-----~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~----------------------------~~~~  577 (699)
T 1n7d_A          531 IY-----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----------------------------RKTI  577 (699)
T ss_dssp             CC-----EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC----------------------------CEEE
T ss_pred             ee-----EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc----------------------------eEEE
Confidence            10     00011223457899999877666555 44567666642100                            0111


Q ss_pred             EEe-cCCCceeEEEEecCcEEEEEECCCcEEEEeccCCcee
Q psy12788        163 LKS-QYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       163 l~s-~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      +.. ........|++..+..|++....+.|..+|..+|+..
T Consensus       578 ~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          578 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred             EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence            100 0011234556665444555555678888888777643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.69  E-value=3.4  Score=36.36  Aligned_cols=111  Identities=7%  Similarity=-0.016  Sum_probs=60.5

Q ss_pred             CCCCEEEEecCC--eEEEEeC-CC----cEEEEeCCCCEE--EEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCC-cEE
Q psy12788          7 PVPPYALSWPAG--YILAAGS-DR----IVTIYESDGRVH--RIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYD-NIK   75 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~-D~----~i~vWd~~g~~~--~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d-~i~   75 (254)
                      ...+..++|+++  .|+.+.. ++    .+.+.+.+|...  +.+. ..  .   ....++++| +|.++++-..+ ++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~--~---~p~giavdp~~g~lyv~d~~~~~V~  251 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KG--Q---NCNGAETHPINGELYFNSWNAGQVF  251 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-EC--S---SCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cC--C---CceEEEEeCCCCEEEEEECCCCEEE
Confidence            345788999873  3555443 11    233344555322  2332 11  2   345788999 77766654333 466


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESV  127 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~  127 (254)
                      .++..  ......  ............|+|+|+|++|..+ ...+.|..++..
T Consensus       252 ~~~~~--~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          252 RYDFT--TQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEETT--TTEEEE--EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEECC--CCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            66643  221111  1112222346789999999955554 456788887753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.38  E-value=2  Score=36.77  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=57.5

Q ss_pred             CCCEEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeec-CCCCCCCCEEEEEECCC----CCEEEEEeC------CcEE
Q psy12788          8 VPPYALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYT-APHYKEREFTVACSSPS----GQAVVVGSY------DNIK   75 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~-~~~~~~~~v~~~a~sPd----g~~la~gs~------d~i~   75 (254)
                      ..|..++|.|+ .|+.+..++.|++++ +|+........ .. ........++|+|+    +.+.++-..      ++|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~-~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYH-RGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCC-STTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEee-cCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            45789999885 466666778999998 55422111111 11 12346889999998    444444332      3455


Q ss_pred             EEEecCCCcceee-cC-ceecC----CCCcEeEEEEecCCCeEEEe
Q psy12788         76 LFAWSPSKSVWEE-QP-NKTIP----NLYTISALSWKRDGSRIACG  115 (254)
Q Consensus        76 l~d~~~~~~~~~~-~~-~~~~~----~~~~i~~l~~spdG~~la~g  115 (254)
                      .++....  .... .. ...++    .......|+|.|||.+.++-
T Consensus       109 r~~~~~~--~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGE--RGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSS--CEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCC--CcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            5554421  1110 00 01122    11234689999999776654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.35  E-value=3.1  Score=34.79  Aligned_cols=109  Identities=10%  Similarity=0.000  Sum_probs=61.9

Q ss_pred             CCEEEEecC--CeE-EEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---cEEEEEecCC
Q psy12788          9 PPYALSWPA--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---NIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~   82 (254)
                      .|..+++++  +.| ++-...+.|.+.+.+|+....+-.    ........++++|.+..|-.....   +|...+.+  
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--  151 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--  151 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence            456666653  344 454567789999977765544421    122457899999965544333332   35445432  


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~  126 (254)
                      .....   ..........+.|+|+|++..|..+. ..+.|..+|.
T Consensus       152 G~~~~---~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          152 GVDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             SCCEE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCeE---EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            21111   00011234578999999887776665 3456766664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.29  E-value=3.2  Score=35.55  Aligned_cols=58  Identities=12%  Similarity=-0.006  Sum_probs=34.2

Q ss_pred             CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCcee----cCCCCcEeEEEEecC---CCeEEEe
Q psy12788         52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKT----IPNLYTISALSWKRD---GSRIACG  115 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~----~~~~~~i~~l~~spd---G~~la~g  115 (254)
                      .....++|.|||+++++-...+|++++  ... . +.  ...    .........|+|+||   +.+|.++
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d--~~G-~-~~--~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS--PSG-K-KL--VASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC--SSC-E-EE--EEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe--CCC-c-eE--eeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            357899999999977664443566665  212 1 11  111    122356889999998   4444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.22  E-value=3.8  Score=35.42  Aligned_cols=110  Identities=8%  Similarity=-0.102  Sum_probs=61.3

Q ss_pred             CCCEEEEecC--CeE-EEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCC-cEEEEEecCC
Q psy12788          8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d-~i~l~d~~~~   82 (254)
                      ..+..++|++  +.| .+-...+.|..++.+|.....+. .   ........++++|.+..| .+-... +|.+.+.+..
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~---~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-S---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-C---SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-e---CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            3577899985  344 44455678888886665443332 1   111245678999865544 443333 4666554321


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-C-CcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-C-GSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-d-g~v~iwd~  126 (254)
                      ...     ............|++.|++.+|..... . +.|..++.
T Consensus       192 ~~~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          192 HRK-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             SCE-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ceE-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            111     111122346789999997776665553 3 56666664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.11  E-value=0.92  Score=40.44  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             CEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceee----c----CceecC-----CCCcEeEEEEecC---CCeEEEee
Q psy12788         53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEE----Q----PNKTIP-----NLYTISALSWKRD---GSRIACGG  116 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~----~----~~~~~~-----~~~~i~~l~~spd---G~~la~g~  116 (254)
                      .|..+..||+|++||.-+...+.|..+-.....-..    .    ....+.     ...+|..+-|+|-   |..|++=.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            678899999999999988778888776421110000    0    001111     2357999999996   55799999


Q ss_pred             cCCcEEEEeee
Q psy12788        117 LCGSVELFESV  127 (254)
Q Consensus       117 ~dg~v~iwd~~  127 (254)
                      .|+.|++||+.
T Consensus       147 sD~~Ir~yDl~  157 (452)
T 3pbp_A          147 EDDTITMFDIL  157 (452)
T ss_dssp             TTSCEEEEETT
T ss_pred             cCCEEEEEEcc
Confidence            99999999975

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.95  E-value=3.3  Score=33.99  Aligned_cols=74  Identities=3%  Similarity=-0.021  Sum_probs=45.5

Q ss_pred             CCCCCEEEEEECCCCCEE-EEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         49 YKEREFTVACSSPSGQAV-VVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        49 ~~~~~v~~~a~sPdg~~l-a~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      +-...+..++|+|+++.| |+...+. +|+-++.....+..   ..+........|++.++|.++++.-.++.+.++++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~-~I~~ld~~g~v~~~---i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPA-AIVEMTTNGDLIRT---IPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTE-EEEEEETTCCEEEE---EECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCC-eEEEEeCCCCEEEE---EecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            555689999999987654 4455443 24444343333221   12233345778899999987666556677777765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.90  E-value=4  Score=34.81  Aligned_cols=60  Identities=10%  Similarity=0.005  Sum_probs=34.7

Q ss_pred             CEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeec-C-ceecCCCCcEeEEEEecC---CCeEEEee
Q psy12788         53 EFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQ-P-NKTIPNLYTISALSWKRD---GSRIACGG  116 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~-~-~~~~~~~~~i~~l~~spd---G~~la~g~  116 (254)
                      ....++|.|||+++++-...+|++++ .   ...+.. . ............|+|+||   +.+|.++.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            46799999999977664333476666 2   111110 0 001122456889999999   54444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.88  E-value=4.2  Score=35.07  Aligned_cols=104  Identities=9%  Similarity=0.034  Sum_probs=60.2

Q ss_pred             CCEEEEecCC-eEEEEe-------------CCCcEEEEeCC---CCEEEEeeecC---CCCCCCCEEEEEECC--CCC--
Q psy12788          9 PPYALSWPAG-YILAAG-------------SDRIVTIYESD---GRVHRIFDYTA---PHYKEREFTVACSSP--SGQ--   64 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s-------------~D~~i~vWd~~---g~~~~~~~~~~---~~~~~~~v~~~a~sP--dg~--   64 (254)
                      .+..++..++ .+.+++             .++.|.++|.+   ++ .+.+...-   + ........+.+.+  +|.  
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-~~~l~~~g~~~~-~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLD-ISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC-EEECEEECSSCC-GGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-eEEEEccCCCCC-cCceeeeeeEEEECCCCcEE
Confidence            4566777664 444554             68889999943   33 33343221   1 1223566777765  464  


Q ss_pred             EEEEEeC--C-cEEEEEecCCCcceeecCceecCC--CCcEeEEEEecCCCeEEEee
Q psy12788         65 AVVVGSY--D-NIKLFAWSPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        65 ~la~gs~--d-~i~l~d~~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~g~  116 (254)
                      ++++...  + .+.+|+++........  .....+  ....+++...|+|++.++..
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~--~~~~~g~~~~~pND~~v~~~G~fyvt~~  183 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLH--LKTIRHKLLPSVNDIVAVGPEHFYATND  183 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEE--EEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEE--EeccccCCCCCCceEEEeCCCCEEecCC
Confidence            4555333  3 4789988765544332  222332  34789999999999887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.69  E-value=4.7  Score=35.08  Aligned_cols=109  Identities=9%  Similarity=-0.024  Sum_probs=61.8

Q ss_pred             CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-C--CcEEEEEecCC
Q psy12788          9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-Y--DNIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~--d~i~l~d~~~~   82 (254)
                      .+..++.+.  + +.++-...+.|.+.+.+|.....+-.    ........++++|.+..|.... .  .+|...+.+..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            455566553  3 34454556788888877765544421    1224578999999655544433 2  24655554321


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      ...     ..........+.|+++|++..|..+.. .+.|..+|+
T Consensus       236 ~~~-----~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          236 DIY-----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             SCE-----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccE-----EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence            110     011122346789999998888777654 455666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.53  E-value=4.4  Score=34.44  Aligned_cols=110  Identities=8%  Similarity=-0.105  Sum_probs=61.3

Q ss_pred             CCCEEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCC-cEEEEEecCC
Q psy12788          8 VPPYALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYD-NIKLFAWSPS   82 (254)
Q Consensus         8 ~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d-~i~l~d~~~~   82 (254)
                      ..+.+++|++  +.|. +-...+.|..++.+|.....+. .   ........++++|.+..| .+-... +|.+.+.+..
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~---~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-S---TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-e---CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            3468889985  3444 4445677888886654333321 1   112345689999865544 443333 4777775422


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cC-CcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LC-GSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~d-g~v~iwd~  126 (254)
                      ...     ............|++.|++.+|.... .. +.|..+++
T Consensus       149 ~~~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          149 HRK-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             SCE-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ceE-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            111     11112234678999999766555544 33 56766664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.53  E-value=4.9  Score=34.94  Aligned_cols=110  Identities=9%  Similarity=-0.159  Sum_probs=57.4

Q ss_pred             CCCCEEEEecC--CeEE-EEeCCCcEEEEeCCCC----EEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEE
Q psy12788          7 PVPPYALSWPA--GYIL-AAGSDRIVTIYESDGR----VHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLF   77 (254)
Q Consensus         7 ~~~v~~l~w~~--~~l~-s~s~D~~i~vWd~~g~----~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~   77 (254)
                      -..+.+++|++  +.|. +-...+.|+.++.+|.    ....+. .   ........+|+++.+. +..+-... +|.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~---~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-C---SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-e---CCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            34678889985  3444 4345677888875541    111221 1   1234578999998544 44443333 46666


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec--CCcEEEEe
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFE  125 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~--dg~v~iwd  125 (254)
                      +.+...  ..   ............|++.|.+.+|.....  .+.|...+
T Consensus       187 ~~~g~~--~~---~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~  231 (400)
T 3p5b_L          187 DTKGVK--RK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  231 (400)
T ss_dssp             CTTTCS--EE---EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred             eCCCCc--eE---EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence            643211  11   111123345789999997666665542  24454444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.36  E-value=1.1  Score=36.43  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             eEEEEeCCCcEEEEe-CCCC------EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCC---cceee
Q psy12788         19 YILAAGSDRIVTIYE-SDGR------VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSK---SVWEE   88 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~------~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~---~~~~~   88 (254)
                      +|++...| +++.=. +++.      ...++.  .  +-=..++.++|+|+|.+.|+ +...  ||......   ..|-.
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG--~--~gw~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~   77 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIG--K--GGWSNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMG   77 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEE--S--SSCTTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHH
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccC--c--cccccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccc
Confidence            57777777 655544 3433      112221  0  00136779999999999998 4443  55544322   22211


Q ss_pred             cCceecCC--CCcEeEEEEecCCCeEEEeecCCcEEEEe
Q psy12788         89 QPNKTIPN--LYTISALSWKRDGSRIACGGLCGSVELFE  125 (254)
Q Consensus        89 ~~~~~~~~--~~~i~~l~~spdG~~la~g~~dg~v~iwd  125 (254)
                      . ...+..  -....++.|.|+|.+.|+  .||.|.-++
T Consensus        78 s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           78 R-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             H-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             c-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence            0 111111  112478999999999998  568775554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=92.10  E-value=5.4  Score=34.43  Aligned_cols=105  Identities=9%  Similarity=-0.089  Sum_probs=54.7

Q ss_pred             EEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeec
Q psy12788         12 ALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQ   89 (254)
Q Consensus        12 ~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~   89 (254)
                      +.+..+...+..+....|+..+.++.....+.     .....+..++|+|.+..|-.....  +|+.++.+  ....+. 
T Consensus        81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~-----~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~--g~~~~~-  152 (386)
T 3v65_B           81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLL-----NNLENAIALDFHHRRELVFWSDVTLDRILRANLN--GSNVEE-  152 (386)
T ss_dssp             EEECSSCCEEEEECBSCEEEECTTSCCCEEEE-----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCEEE-
T ss_pred             ECCccccceeEeecCccceeeccCCCcEEEEe-----cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC--CCCcEE-
Confidence            33334332233334467888885554333321     122458899999876655554433  35555543  221111 


Q ss_pred             CceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEee
Q psy12788         90 PNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFES  126 (254)
Q Consensus        90 ~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~  126 (254)
                        ...........+++.|.+..| .+-...+.|.+.+.
T Consensus       153 --~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~  188 (386)
T 3v65_B          153 --VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL  188 (386)
T ss_dssp             --EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred             --EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence              011122345678999865554 44445667777765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.99  E-value=9  Score=36.76  Aligned_cols=100  Identities=9%  Similarity=-0.132  Sum_probs=52.9

Q ss_pred             CCCEEEEecC--CeE-EEEeCCCcEEEEeCCCC----EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEE
Q psy12788          8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDGR----VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFA   78 (254)
Q Consensus         8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g~----~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d   78 (254)
                      ..+.+|+|++  +.| ++-...+.|+.++.+|.    ....+ ..   ........||+++.+..|-.... . +|++.+
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-i~---~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-IS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-EC---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE-Ee---cCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            4567788875  333 34445567777775542    11111 11   12234678999988765544443 3 477777


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~  116 (254)
                      .+....  .   ............|++.|.+.+|....
T Consensus       500 ldG~~~--~---~l~~~~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          500 TKGVKR--K---TLFRENGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             TTSSSE--E---EEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             CCCCeE--E---EEEeCCCCCcceEEEecCCCCEEEec
Confidence            542211  1   11112334578999999866665554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.83  E-value=2.6  Score=36.42  Aligned_cols=94  Identities=10%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             CCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------------CcEEEEEecCCCccee
Q psy12788         26 DRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------------DNIKLFAWSPSKSVWE   87 (254)
Q Consensus        26 D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------------d~i~l~d~~~~~~~~~   87 (254)
                      +.+|.+|+  ..+....-+. ......-...+.+++.|+|.+.++...                ..-+||-++...  ..
T Consensus       138 ~s~ielf~~d~~~~~~~~~~-~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLK-TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEE-EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CE
T ss_pred             CCeEEEEEEECCCCEEEEEe-ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EE
Confidence            45677776  4444332221 111012246889999999998877541                113466655421  11


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES  126 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~  126 (254)
                          .........+.|+|||||+.|.++. ..+.|..||+
T Consensus       215 ----~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          215 ----VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             ----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ----EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence                1112234578899999998877765 4677777775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.66  E-value=5.2  Score=33.35  Aligned_cols=109  Identities=9%  Similarity=-0.155  Sum_probs=57.1

Q ss_pred             CCCEEEEecC--CeE-EEEeCCCcEEEEeCCC----CEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEEE
Q psy12788          8 VPPYALSWPA--GYI-LAAGSDRIVTIYESDG----RVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLFA   78 (254)
Q Consensus         8 ~~v~~l~w~~--~~l-~s~s~D~~i~vWd~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d   78 (254)
                      ..+.+++|++  +.| .+-...+.|..++.+|    .....+- .   ..-.....+++++.+. +..+-..+ +|.+++
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~---~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~  105 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-e---CCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence            3567889985  344 4445567888888554    2222221 1   1113457899997554 44443333 477777


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC--CcEEEEe
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC--GSVELFE  125 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d--g~v~iwd  125 (254)
                      .+.....     ............++..|++.+|..+...  +.|...+
T Consensus       106 ~~g~~~~-----~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A          106 TKGVKRK-----TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             TTSSSEE-----EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCCceE-----EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            5421111     0111123467899999977666555432  3444443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.64  E-value=5.7  Score=35.35  Aligned_cols=109  Identities=16%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CCCEEEEecCC-eEEEEeCCC-cEEEEe-CCCCEEEEeeecCC--C-CCCCCEEEEEECC----CCCEEEEEeC------
Q psy12788          8 VPPYALSWPAG-YILAAGSDR-IVTIYE-SDGRVHRIFDYTAP--H-YKEREFTVACSSP----SGQAVVVGSY------   71 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~D~-~i~vWd-~~g~~~~~~~~~~~--~-~~~~~v~~~a~sP----dg~~la~gs~------   71 (254)
                      ..+..++|.|+ .|+.+...+ .|++++ .+|+..........  . ..+.....++|+|    ++.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45789999885 455555654 688887 45654322211100  0 0245678999999    4555554432      


Q ss_pred             -------CcEEEEEecCCCcceee-cCce-ecC--CCCcEeEEEEecCCCeEEEee
Q psy12788         72 -------DNIKLFAWSPSKSVWEE-QPNK-TIP--NLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        72 -------d~i~l~d~~~~~~~~~~-~~~~-~~~--~~~~i~~l~~spdG~~la~g~  116 (254)
                             .+|.-++++........ .... .++  .......|+|.|||++.++-+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   12333443322211110 0011 111  123578999999998776644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.61  E-value=3.8  Score=35.24  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             CCCEEEEecCC-eEEEEeC-CCcEEEEe-CCCCEEE--EeeecCCCCCCCCEEEEEECCC----CCEEEEEe---CCcEE
Q psy12788          8 VPPYALSWPAG-YILAAGS-DRIVTIYE-SDGRVHR--IFDYTAPHYKEREFTVACSSPS----GQAVVVGS---YDNIK   75 (254)
Q Consensus         8 ~~v~~l~w~~~-~l~s~s~-D~~i~vWd-~~g~~~~--~~~~~~~~~~~~~v~~~a~sPd----g~~la~gs---~d~i~   75 (254)
                      ..+..++|.|+ .|+.+.. .++|++++ .+|+...  .+..... ........++|+|+    +.+.++-+   .++|.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~-~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSP-SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceee-cCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            46789999885 4555555 88999998 4455321  1110011 22456899999995    55555422   22333


Q ss_pred             EEEecCCC---cceeecC--ceecC--CCCcEeEEEEecCCCeEEEee
Q psy12788         76 LFAWSPSK---SVWEEQP--NKTIP--NLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        76 l~d~~~~~---~~~~~~~--~~~~~--~~~~i~~l~~spdG~~la~g~  116 (254)
                      -+.+....   .......  ...++  ....-..|.|.|||.+.++-+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            33333211   0110000  00111  122456799999998777643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.12  E-value=2.7  Score=35.89  Aligned_cols=107  Identities=10%  Similarity=0.018  Sum_probs=57.2

Q ss_pred             CCCEEEEecCC-e-EEEEeCCCcEEEEeCCCCEEEEee-e--cCCCCCCCCEEEEEECCC----CCEEEEEeC-------
Q psy12788          8 VPPYALSWPAG-Y-ILAAGSDRIVTIYESDGRVHRIFD-Y--TAPHYKEREFTVACSSPS----GQAVVVGSY-------   71 (254)
Q Consensus         8 ~~v~~l~w~~~-~-l~s~s~D~~i~vWd~~g~~~~~~~-~--~~~~~~~~~v~~~a~sPd----g~~la~gs~-------   71 (254)
                      ..+..++|.|+ . |+.+...+.|++++.+|.....+. .  ... ........++|+|+    +.+.++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~-~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWA-HGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCC-STTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCccccc-CCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            35788999884 4 777777899999986664321111 0  000 12345789999995    555554332       


Q ss_pred             -CcEEEEEecCCCcceeecC-c-eecC----CCCcEeEEEEecCCCeEEEe
Q psy12788         72 -DNIKLFAWSPSKSVWEEQP-N-KTIP----NLYTISALSWKRDGSRIACG  115 (254)
Q Consensus        72 -d~i~l~d~~~~~~~~~~~~-~-~~~~----~~~~i~~l~~spdG~~la~g  115 (254)
                       ++|..++++.......... . ...+    ....-..|+|.|||.++++-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence             1344444433221111100 0 0111    11234679999999765554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=89.68  E-value=8.6  Score=32.58  Aligned_cols=106  Identities=8%  Similarity=-0.087  Sum_probs=57.0

Q ss_pred             EEEEecCC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCccee
Q psy12788         11 YALSWPAG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWE   87 (254)
Q Consensus        11 ~~l~w~~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~   87 (254)
                      .+.+..++ .|+- +....|+..+.+|.....+.     .....+..++|+|..+.|-.....  +|+.++.+...  .+
T Consensus        37 ~C~~~~~~~~ll~-~~~~~I~~i~~~g~~~~~~~-----~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~  108 (349)
T 3v64_C           37 SCKALGPEPVLLF-ANRIDIRQVLPHRSEYTLLL-----NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VE  108 (349)
T ss_dssp             CEEESSSCCEEEE-ECBSCEEEECTTSCCEEEEE-----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CE
T ss_pred             cccccccCceeEe-ecccceEEEeCCCCeeEEee-----cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ce
Confidence            44444443 3333 34456888886665443332     122457899999876665554433  36555543211  11


Q ss_pred             ecCceecCCCCcEeEEEEecCCCeE-EEeecCCcEEEEeee
Q psy12788         88 EQPNKTIPNLYTISALSWKRDGSRI-ACGGLCGSVELFESV  127 (254)
Q Consensus        88 ~~~~~~~~~~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~  127 (254)
                      .   ...........+++.+.+..| .+-...+.|.+.+..
T Consensus       109 ~---~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  146 (349)
T 3v64_C          109 E---VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  146 (349)
T ss_dssp             E---EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             E---EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence            1   011122345789999865544 454556778888753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.68  E-value=3.6  Score=36.66  Aligned_cols=156  Identities=13%  Similarity=0.078  Sum_probs=84.1

Q ss_pred             CCCEEEEEeCCcEEEEEecCCCcceeecCceecCC---CCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeE
Q psy12788         62 SGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPN---LYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFE  138 (254)
Q Consensus        62 dg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~---~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~  138 (254)
                      +|.-+.++-.+.+|..++.... .+.   ....++   ...|..+..||+|++||..+ +..|.|-.+-.+........ 
T Consensus        31 n~t~i~~a~~n~iR~~~i~~~~-~Yk---~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~-  104 (452)
T 3pbp_A           31 NGTRIVFIQDNIIRWYNVLTDS-LYH---SLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS-  104 (452)
T ss_dssp             TTTEEEEEETTEEEEEETTTCS-SCE---EEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH-
T ss_pred             CCCEEEEEECCEEEEEECCCCC-cce---EEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc-
Confidence            4444444444456666654322 111   112222   22578899999999999886 55777776542211111000 


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCc----EEEEEECCCcEEEEeccCCc--eeeEeCCCCCCc
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGND----RYLVARTPDTLLLGDLHRNL--LSEVLWPDSGRN  212 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~----~~~v~~~d~~i~i~dl~~~~--~~~~~~~~~~g~  212 (254)
                        ..+.-+++-+.+..-+        .....+|.++-|+|-+    .+++-.+|++|++||+....  ...+. . .  .
T Consensus       105 --~~~~~q~~ty~l~~~~--------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~-k-~--~  170 (452)
T 3pbp_A          105 --IQDAFQIFHYSIDEEE--------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN-K-P--N  170 (452)
T ss_dssp             --HHHTTEEEEEEGGGCC----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES-C-C--C
T ss_pred             --cccccceeEEEcCCcc--------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh-c-c--c
Confidence              0011123333333110        0123579999998733    57778889999999998632  11111 0 1  1


Q ss_pred             eeEEe---eCceEEEEEeCCeeEEEEee
Q psy12788        213 EKFYF---DNVTVCLVFNAGELSIIEYG  237 (254)
Q Consensus       213 ~~~~~---~~~~~~~~~~~g~~~~~~~~  237 (254)
                      ..|-+   ..+..++.|..|-+.|+-..
T Consensus       171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          171 NSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             SEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             cccCCCcccceEEEEEEcCCCcEEEEEe
Confidence            22322   14678888888777776644

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.66  E-value=2.1  Score=40.47  Aligned_cols=108  Identities=8%  Similarity=-0.163  Sum_probs=51.8

Q ss_pred             CCEEEEecC--CeEEEE-eCCCcEEEEeCCC----CEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCC-cEEEEEe
Q psy12788          9 PPYALSWPA--GYILAA-GSDRIVTIYESDG----RVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYD-NIKLFAW   79 (254)
Q Consensus         9 ~v~~l~w~~--~~l~s~-s~D~~i~vWd~~g----~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d-~i~l~d~   79 (254)
                      .+.+++|++  +.|..+ ...+.|+.++.++    .....+   .. ........+++++.+ +++++-... +|.+++.
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~---i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---IS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB---CC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE---Ee-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            456778875  344433 3456777777443    111111   00 111234578888654 444432223 4777775


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC--CcEEEEe
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC--GSVELFE  125 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d--g~v~iwd  125 (254)
                      ......  .   ...........|++.|++.+|......  +.|..++
T Consensus       483 dg~~~~--~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          483 KGVKRK--T---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             SSCCEE--E---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred             CCCceE--E---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence            422111  0   001122345778999976666555432  4454443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=89.45  E-value=8.6  Score=32.24  Aligned_cols=106  Identities=10%  Similarity=-0.050  Sum_probs=56.0

Q ss_pred             CEEEEecC--Ce-EEEEeCCCcEEEEeCCCCE--EEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC-cEEEEEecCC
Q psy12788         10 PYALSWPA--GY-ILAAGSDRIVTIYESDGRV--HRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD-NIKLFAWSPS   82 (254)
Q Consensus        10 v~~l~w~~--~~-l~s~s~D~~i~vWd~~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d-~i~l~d~~~~   82 (254)
                      +.+++|++  +. ..+-...+.|..++.+|..  ...+..     .......+++++.+. ++.+-... +|.+++.+..
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-----~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-----CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-----CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            56788875  33 3444556778888855431  111111     112456889998554 44443333 4777775422


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec--CCcEEEEe
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFE  125 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~--dg~v~iwd  125 (254)
                      ...     ............+++.|.+.+|.....  .+.|...+
T Consensus       112 ~~~-----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A          112 LRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             SCE-----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             cEE-----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            111     111123346789999998666665552  34444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.80  E-value=11  Score=32.54  Aligned_cols=199  Identities=12%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC----CCE--EEEEe--C---CcEEEEEecCCCccee
Q psy12788         19 YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS----GQA--VVVGS--Y---DNIKLFAWSPSKSVWE   87 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd----g~~--la~gs--~---d~i~l~d~~~~~~~~~   87 (254)
                      .++....++-+.+||.+|+.++.+.     .  ..++.+..-|+    |+.  +|.++  .   +++++|+++.....+.
T Consensus        42 ~ii~t~k~~gL~Vydl~G~~l~~~~-----~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           42 KLITTNKKSGLVVYSLDGKMLHSYN-----T--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEEC-----C--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             EEEEEcCCCCEEEEcCCCcEEEEcc-----C--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            4555556678999999999997763     1  34666666663    332  33332  3   3589998865454444


Q ss_pred             ecCce--ec-CCCCcEeEEEE--ecC-CC-eEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         88 EQPNK--TI-PNLYTISALSW--KRD-GS-RIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        88 ~~~~~--~~-~~~~~i~~l~~--spd-G~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      .....  .. .....+..+++  +|+ |+ ++.+...+|.+..|++...                       ..+....+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~-----------------------~~g~~~~~  171 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKAD-----------------------KNGYISGK  171 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC-----------------------TTSCEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeC-----------------------CCCcccce
Confidence            32110  00 11145677787  775 54 6778888898888876321                       00000000


Q ss_pred             EEEEecCCCceeEEEEec-CcEEEEEECCCcEEEEecc-----CCceeeEeCCCC---CCceeEEe----eCceEEEEEe
Q psy12788        161 VILKSQYGYEITDVAIMG-NDRYLVARTPDTLLLGDLH-----RNLLSEVLWPDS---GRNEKFYF----DNVTVCLVFN  227 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~-~~~~~v~~~d~~i~i~dl~-----~~~~~~~~~~~~---~g~~~~~~----~~~~~~~~~~  227 (254)
                      .+-+=..+..+..+++.+ .++++++-.+..|..+|.+     ++++... +...   ...|-..+    ++....++-+
T Consensus       172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~-~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          172 KVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR-ADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE-BSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             EEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE-ecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            010001234566666664 3577788777666656654     2344322 2101   11122222    1123556666


Q ss_pred             CCe--eEEEEee-cCeeeeeeecC
Q psy12788        228 AGE--LSIIEYG-NNEILTCVRIP  248 (254)
Q Consensus       228 ~g~--~~~~~~~-~~~~~~~~~~~  248 (254)
                      .|.  +.+++.. .++.+|+.++-
T Consensus       251 QG~~s~~Vydr~~~~~~vg~f~Ig  274 (355)
T 3amr_A          251 QGNSSYAIYDRQGKNKYVADFRIT  274 (355)
T ss_dssp             GGGTEEEEEESSTTCCEEEEEEEC
T ss_pred             CCCCEEEEEECCCCCcEEEEEEec
Confidence            554  6666664 56788888743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=88.04  E-value=16  Score=33.73  Aligned_cols=109  Identities=9%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             CCEEEEecC--Ce-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCC-EEEEEeCC--cEEEEEecCC
Q psy12788          9 PPYALSWPA--GY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ-AVVVGSYD--NIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~~--~~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~-~la~gs~d--~i~l~d~~~~   82 (254)
                      .|..+|.+.  +. .++-...+.|.+.+.+|...+.+..    ..-.....++++|.+. ++.+-...  +|...+.+  
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d--  158 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--  158 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC--
Confidence            466777654  43 4455567789999988865544421    1223466899999744 44443222  24333432  


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~  126 (254)
                      .....   ..........+.|++.|+++.|..+. ..+.|...|.
T Consensus       159 G~~~~---~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~  200 (619)
T 3s94_A          159 GSSRF---IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  200 (619)
T ss_dssp             SCSCE---EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred             CCceE---EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence            11110   00111234578999999877766665 4566777665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=86.31  E-value=24  Score=33.79  Aligned_cols=109  Identities=9%  Similarity=0.004  Sum_probs=62.0

Q ss_pred             CCEEEEec--CC-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC---CcEEEEEecCC
Q psy12788          9 PPYALSWP--AG-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY---DNIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~--~~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~---d~i~l~d~~~~   82 (254)
                      .+..||.+  .+ +.++-...+.|.+.+.+|...+++..    ........|+++|.+..|-....   .+|...+.+..
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            35556554  33 44455567788888888876655531    12245789999997544444332   23555554321


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      ..  .   ..........+.|++.|++.+|..+.. .+.|...|+
T Consensus       548 ~~--~---~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          548 DI--Y---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             CE--E---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ce--E---EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            11  0   111122346789999988777776654 345655554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=86.30  E-value=21  Score=33.10  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=66.5

Q ss_pred             CCEEEEecC--C-eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECC-CCCEEEEEeCCc-EEEEEecCCC
Q psy12788          9 PPYALSWPA--G-YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSP-SGQAVVVGSYDN-IKLFAWSPSK   83 (254)
Q Consensus         9 ~v~~l~w~~--~-~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sP-dg~~la~gs~d~-i~l~d~~~~~   83 (254)
                      .|..+|++.  + +..+-+..++|.+.+.+|+..+.+..    .......+++++| .|.++.+-.... -+|+......
T Consensus       390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~----~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG  465 (628)
T 4a0p_A          390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLK----GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG  465 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEE----CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred             CcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEe----CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence            466777654  4 44566667889998988887666532    2234688999999 677766643332 2455443322


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      ....   ..........+.|++.++++.|..+.. .+.|...|.
T Consensus       466 ~~~~---~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~  506 (628)
T 4a0p_A          466 TERE---VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL  506 (628)
T ss_dssp             CSCE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCcE---EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            1111   011112345789999999887777654 455665554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.98  E-value=12  Score=33.43  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             CCEEEEecCC---eEEEEeCCCcEEEEeCCCCE----EEEeeecCCCC----CCCCEEEEEECCC----CCEEEEEeC--
Q psy12788          9 PPYALSWPAG---YILAAGSDRIVTIYESDGRV----HRIFDYTAPHY----KEREFTVACSSPS----GQAVVVGSY--   71 (254)
Q Consensus         9 ~v~~l~w~~~---~l~s~s~D~~i~vWd~~g~~----~~~~~~~~~~~----~~~~v~~~a~sPd----g~~la~gs~--   71 (254)
                      .+..++|.|+   .|+.+-..+.|++++.+|..    +..+......+    .+.....++|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            5688999875   37777888999999855532    22221001001    1356789999997    555554331  


Q ss_pred             --------C-cEEE--EEecCCC-cc--e-eecCceec---CCCCcEeEEEEecCCCeEEEeec
Q psy12788         72 --------D-NIKL--FAWSPSK-SV--W-EEQPNKTI---PNLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        72 --------d-~i~l--~d~~~~~-~~--~-~~~~~~~~---~~~~~i~~l~~spdG~~la~g~~  117 (254)
                              + ..+|  |.+.... ..  . ........   .....-..|+|.|||++.++-+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence                    1 1244  3332210 10  0 00001111   12235688999999987665553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=84.77  E-value=21  Score=31.65  Aligned_cols=52  Identities=12%  Similarity=0.114  Sum_probs=30.4

Q ss_pred             CEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecC-------CCCcEeEEEEecC
Q psy12788         53 EFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIP-------NLYTISALSWKRD  108 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~-------~~~~i~~l~~spd  108 (254)
                      ....++|.|+|+++++-...+ |++++  ........  ...+.       .......|+|+||
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~--~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVN--PESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEEC--TTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEE--CCCCcEeE--EecCCccccccCCCCceeEEEECCC
Confidence            467999999999887654333 54444  22222111  11111       2456789999995

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.90  E-value=20  Score=30.73  Aligned_cols=55  Identities=13%  Similarity=0.052  Sum_probs=32.2

Q ss_pred             CCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcceeec---CceecCCCCcEeEEEEecC
Q psy12788         52 REFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSVWEEQ---PNKTIPNLYTISALSWKRD  108 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~~~~~---~~~~~~~~~~i~~l~~spd  108 (254)
                      .....++|.|||.++++--.. +|++++-.  .......   .............|+++||
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~--~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAK--TGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECC--CCcEeeecccCceeecCCCCceeeEeccc
Confidence            357899999999988765423 46555522  2211110   0011123457889999996

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=80.13  E-value=37  Score=31.39  Aligned_cols=108  Identities=14%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             CCEEEEec--CCe-EEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCC-CCEEEEEeC--CcEEEEEecCC
Q psy12788          9 PPYALSWP--AGY-ILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPS-GQAVVVGSY--DNIKLFAWSPS   82 (254)
Q Consensus         9 ~v~~l~w~--~~~-l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPd-g~~la~gs~--d~i~l~d~~~~   82 (254)
                      .|..+|.+  .+. ..+-...+.|.+.+.+|.....+. .   ..-.....++++|. |.++.+-..  .+|...+.+  
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--  154 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-W---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--  154 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-C---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-e---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--
Confidence            35555554  343 445455677888887775444432 1   12245789999995 555544322  234444432  


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      .....    .........+.|++.+++++|..+.. .+.|...|+
T Consensus       155 G~~~~----~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          155 GSERT----TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             SCSCE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceE----EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            21111    11223456789999998877776664 456766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 6   HPVPPYALSW-PAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQ 64
           H     A+ + P G   A GSD   T    D R  +     +        T    S SG+
Sbjct: 225 HESDINAICFFPNGNAFATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 65  AVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVEL 123
            ++ G  D    ++    +        +        +S L    DG  +A G     +++
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDN-----RVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 124 F 124
           +
Sbjct: 339 W 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/114 (10%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 14  SWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD 72
             P  ++L+   D+ + +++ S G           H  +           G+ ++  + D
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GH--DNWVRGVLFHSGGKFILSCADD 268

Query: 73  N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFE 125
             ++++ +   + +     ++       +++L + +    +  G +  +V+++E
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 6   HPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQA 65
           H      +      +++  +D  V I++                 + +  V C   +   
Sbjct: 216 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ---GPNKHQSAVTCLQFNKNF 272

Query: 66  VVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVE 122
           V+  S D  +KL+     + +      ++  +   +  +         A G   G+ E
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.83
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.79
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.72
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.57
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.29
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.06
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.01
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.91
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.67
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.3
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.01
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.98
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.68
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.62
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.43
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.76
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.31
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.05
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.1
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	84.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.16
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.48

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=8.9e-25  Score=186.70  Aligned_cols=189  Identities=8%  Similarity=0.032  Sum_probs=142.3

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCE--EEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--c-E
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRV--HRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--N-I   74 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~--~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~-i   74 (254)
                      +.+|...|.+++|+|  ++|++|+.|++|+||| .+++.  ...+.     .|..+|.+++|+|+|++|++++.+  + +
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~d~~~l~~~~~~~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-----cccCccccccccccccccccccccccccc
Confidence            468999999999998  4899999999999999 55543  23333     688899999999999999998865  3 7


Q ss_pred             EEEEecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEe----------------ecee
Q psy12788         75 KLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIW----------------KGKF  137 (254)
Q Consensus        75 ~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~----------------~~~~  137 (254)
                      ++|+++..+...     ....|...|++++|+|+|++ |++|+.||.|++||...++...                .+.+
T Consensus       129 ~v~~~~~~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~  203 (311)
T d1nr0a1         129 HVFLFDTGTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  203 (311)
T ss_dssp             EEEETTTCCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccc-----cccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc
Confidence            899987544321     12345678999999999996 8889999999999987554332                1223


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEe------cCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCceee
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKS------QYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s------~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~~  203 (254)
                      .++...++.+++|++.++.  ....+..      .+...|++++|+|++++ ++++.|++++|||++++++..
T Consensus       204 l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         204 FASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             EEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4445567889999998874  2112211      13457999999998765 456779999999999998653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.8e-25  Score=187.48  Aligned_cols=186  Identities=13%  Similarity=0.202  Sum_probs=142.1

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .|.+|..+|.+|+|+|+  +|+|||.|++|+||| .+++.+..+.     .|..+|++++|+|+|+++++|+.|+ +++|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-----LRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-----CSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-----cccccEEeeEeeccceeeeeecccceeecc
Confidence            37799999999999984  799999999999999 7888887775     6888999999999999999999996 8888


Q ss_pred             EecCCCcc------------------------------------------------------------------------
Q psy12788         78 AWSPSKSV------------------------------------------------------------------------   85 (254)
Q Consensus        78 d~~~~~~~------------------------------------------------------------------------   85 (254)
                      +.......                                                                        
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            75332100                                                                        


Q ss_pred             ------eeecCc----eecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------------ecee
Q psy12788         86 ------WEEQPN----KTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------------KGKF  137 (254)
Q Consensus        86 ------~~~~~~----~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------------~~~~  137 (254)
                            |.....    ....|...|++++|+|+|++||+|+.||.|++||....+...                  .+.+
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence                  000000    001245679999999999999999999999999975433221                  1234


Q ss_pred             EEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        138 EMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       138 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                      .++...++.+++||+.++.   .+.....+..+|++++|++++. +++++.|++|+|||
T Consensus       285 l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            5555667899999999884   3333344567899999999876 45678899999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-24  Score=179.47  Aligned_cols=217  Identities=14%  Similarity=0.146  Sum_probs=150.6

Q ss_pred             ccccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-----
Q psy12788          2 RVVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-----   73 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-----   73 (254)
                      .|.+|..+|.+|+|+|  ++|+|||.|++|+||| .+++++.++.     +|...|++++|+|++.++++++.+.     
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-----CCCCcEEEEeeecccccccccccccccccc
Confidence            4789999999999998  4799999999999999 7888876664     5666777777777666665555442     


Q ss_pred             --------------------------------------EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe
Q psy12788         74 --------------------------------------IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG  115 (254)
Q Consensus        74 --------------------------------------i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g  115 (254)
                                                            +++||+......     .....+...+.+++|+|||++|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----KTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceee-----eEEccCCCcceeeecccCCCEEEEE
Confidence                                                  334443221110     0112345679999999999999999


Q ss_pred             ecCCcEEEEeeeeeeeEee------------------------------------ceeEEEEecCCeEEEEeCCCCCcee
Q psy12788        116 GLCGSVELFESVLKRTIWK------------------------------------GKFEMIYVSPSQVLVKPLSGESKGR  159 (254)
Q Consensus       116 ~~dg~v~iwd~~~~~~~~~------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~  159 (254)
                      +.||.|++|+...++....                                    +.+..+...++.+++|++.++   .
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~  238 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---M  238 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---E
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---c
Confidence            9999999999765433211                                    112344456788999999988   3


Q ss_pred             eEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEee
Q psy12788        160 GVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYG  237 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~  237 (254)
                      .+.....+...|.++++++++++ ++++.|++|+|||+.++++...- .   ++     .+++.++.|++ +.+.+....
T Consensus       239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~h-----~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-N---AH-----EHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-E---CC-----SSCEEEEEECSSSSCEEEEET
T ss_pred             EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-c---CC-----CCCEEEEEEcCCCCEEEEEeC
Confidence            33333345678999999998865 55778999999999988754321 1   11     23577888887 556555544


Q ss_pred             cCe
Q psy12788        238 NNE  240 (254)
Q Consensus       238 ~~~  240 (254)
                      +..
T Consensus       310 Dg~  312 (317)
T d1vyhc1         310 DQT  312 (317)
T ss_dssp             TSE
T ss_pred             CCe
Confidence            443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1e-24  Score=182.81  Aligned_cols=193  Identities=15%  Similarity=0.138  Sum_probs=139.0

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEe
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~   79 (254)
                      +.||..+|.+|+|+|+  +|+|||.|++|++|| .+|++++.+.   . .|...|++++|+|+|++++++..+.+++|+.
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~-~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---D-VHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---C-SCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---C-CCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            6799999999999984  799999999999999 7888886552   2 6888999999999999877666556999986


Q ss_pred             cCCCcc-----eeec------------------------------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEE
Q psy12788         80 SPSKSV-----WEEQ------------------------------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELF  124 (254)
Q Consensus        80 ~~~~~~-----~~~~------------------------------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iw  124 (254)
                      ......     ....                              ..........+++++|+||+++|++|+.||.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            421100     0000                              00011122468889999999999999999999999


Q ss_pred             eeeeeeeEe-----------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEe--cCCCceeEEEEecCcEE-EE
Q psy12788        125 ESVLKRTIW-----------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKS--QYGYEITDVAIMGNDRY-LV  184 (254)
Q Consensus       125 d~~~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~~~i~~i~~~~~~~~-~v  184 (254)
                      |+..++...                 .+.+.++...++.+++|++.++.  ....+..  .+...|++++|+|++.+ ++
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccceEE
Confidence            986443211                 12234445556789999987763  1111222  23468999999998865 45


Q ss_pred             EECCCcEEEEeccCCce
Q psy12788        185 ARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       185 ~~~d~~i~i~dl~~~~~  201 (254)
                      ++.|++++|||+.++..
T Consensus       242 gs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         242 GSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EETTSCEEEEETTCTTS
T ss_pred             EcCCCEEEEEECCCCCc
Confidence            77899999999998754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.9e-24  Score=184.98  Aligned_cols=188  Identities=12%  Similarity=0.108  Sum_probs=137.5

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      ..||.+++|+|+  +||+|+.|+.|+||| ..++  ++..+.     +|..+|++++|+|+|++||+|+.|+ +++||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-----gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-----CCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            468999999984  799999999999999 4454  344443     8999999999999999999999995 9999986


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----e----------------eceeEEE
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----W----------------KGKFEMI  140 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----~----------------~~~~~~~  140 (254)
                      ..  .+... .....+...|++++|+|||++|++|+.|+.+++|+....+..    .                ++.+.++
T Consensus        82 ~~--~~~~~-~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          82 GR--TWKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             TT--EEEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             cc--ccccc-cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            43  23221 122345678999999999999999999999999986532110    0                1223344


Q ss_pred             EecCCeEEEEeCCCCCc---------------eeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCcee
Q psy12788        141 YVSPSQVLVKPLSGESK---------------GRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~---------------~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~  202 (254)
                      ...++.+++|++.....               +........+...|.+++|+|+++ +++++.|+++++||+.+++..
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            45677888998754321               011222233455799999999875 456788999999999987653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-23  Score=178.63  Aligned_cols=213  Identities=9%  Similarity=0.073  Sum_probs=153.6

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC---EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGR---VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKL   76 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~---~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l   76 (254)
                      .+|...|.+++|+|+  +|++|+ |++|+||| .+++   .+..+.  .. +|...|.+++|+|||++|++|+.|+ +++
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~--~~-~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD--CL-NRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--CS-CTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee--ec-CCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            379999999999984  788887 89999999 4432   222222  23 6888999999999999999999996 999


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee----------------ceeEEE
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK----------------GKFEMI  140 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~----------------~~~~~~  140 (254)
                      ||+........   .....+...|..++|+|++.++++++.|+.|++||...++....                +.+.+.
T Consensus       124 wd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         124 WDLAAPTPRIK---AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EECCCC--EEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99764333221   12234566899999999999999999999999999865543221                122333


Q ss_pred             EecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc----------eeeEeCCCC
Q psy12788        141 YVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL----------LSEVLWPDS  209 (254)
Q Consensus       141 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~----------~~~~~~~~~  209 (254)
                      ...++.+.+||+.++   ..+... .+...|.+++|++++.+ ++++.++.+++||+.+++          +..+.|+ +
T Consensus       201 ~~~d~~v~i~d~~~~---~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s-~  275 (337)
T d1gxra_         201 GGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-Y  275 (337)
T ss_dssp             EETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC-T
T ss_pred             ccccccccccccccc---eeeccc-ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEEC-C
Confidence            445678999999887   333222 35678999999988755 567889999999998765          3466676 6


Q ss_pred             CCceeEEeeCceEEEEEeC
Q psy12788        210 GRNEKFYFDNVTVCLVFNA  228 (254)
Q Consensus       210 ~g~~~~~~~~~~~~~~~~~  228 (254)
                      +|+..+....+....+|+.
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             TSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEEC
Confidence            6655544455555666665

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.1e-24  Score=186.01  Aligned_cols=189  Identities=15%  Similarity=0.195  Sum_probs=143.1

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      |.+|..+|.+|+|+|  ++|++||.|++|+||| .+++....+.  .. +|...|++++|+|++++|++|+.|+ +++|+
T Consensus        47 l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~-~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          47 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--IL-RINRAARCVRWAPNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE--CC-CCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc--cc-cccccccccccccccccceeecccCcceeee
Confidence            568999999999997  4799999999999999 5554443332  23 6778999999999999999999996 89999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee------------------eEe-------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR------------------TIW-------  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~------------------~~~-------  133 (254)
                      +......+... .....+...|++++|+|||++||+|+.||.|++||...+.                  ...       
T Consensus       124 ~~~~~~~~~~~-~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (371)
T d1k8kc_         124 FEQENDWWVCK-HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  202 (371)
T ss_dssp             EETTTTEEEEE-EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             eeccccccccc-ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC
Confidence            87655443221 2223456789999999999999999999999999964321                  111       


Q ss_pred             ---------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        134 ---------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       134 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                               ++.+.++...++.+.+||+.++.   .+.....+..+|.+++|++++++++++.|+.+.+|+...
T Consensus       203 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             cEEEEEeecccccccccccCCcceEEeeeccc---ceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence                     12233444567889999998873   333334456689999999999999999898877765443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.5e-23  Score=178.10  Aligned_cols=188  Identities=15%  Similarity=0.197  Sum_probs=137.8

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeec--------------CCCCCCCCEEEEEECCCCCEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYT--------------APHYKEREFTVACSSPSGQAV   66 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~--------------~~~~~~~~v~~~a~sPdg~~l   66 (254)
                      .+|+..|.+|+|+|+  +|++|+ |++|+||| .+|+++..+...              .. .|...|++++|+|+|++|
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP-SSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccccccc-CCCCCEEEEEECCCCCcc
Confidence            369999999999984  688876 89999999 788877665311              11 356679999999999999


Q ss_pred             EEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe------------
Q psy12788         67 VVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW------------  133 (254)
Q Consensus        67 a~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~------------  133 (254)
                      ++|+.|+ +++|++......     .....|...|.+++|+|++..+++|+.++.+++||........            
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIV-----MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             eecccccccccccccccccc-----cccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            9999996 999996543322     1223467789999999999999999999999999976443221            


Q ss_pred             ----eceeEEEEecCCeEEEEeCCCCCceeeEEEE------ecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCc
Q psy12788        134 ----KGKFEMIYVSPSQVLVKPLSGESKGRGVILK------SQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~------s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~  200 (254)
                          ++.+.++...++.+.+|+..++.  ....+.      ..+...|.+++|++++++ ++++.|+.+++||+.+++
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCc--cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence                12344455567789999998774  211211      123457999999998765 567789999999998654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-22  Score=174.49  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=142.5

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CC--CCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SD--GRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~--g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      .+|...|.+++|+|+  .|++|+.|++|++|| ..  ++....+.     .|...+.+++|+|++.++++++.|+ +++|
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence            478899999999984  799999999999999 32  23443333     6778899999999999999999985 9999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee---------------ceeEEEEe
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK---------------GKFEMIYV  142 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~  142 (254)
                      ++......     .....+...|++++|+|+|+++++|+.||.+++||+..++....               +.+.++..
T Consensus       169 ~~~~~~~~-----~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         169 DLHNQTLV-----RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             ETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccc-----ccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceec
Confidence            96543221     22344667899999999999999999999999999876554321               12334455


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                      .++.+.+|++.++.   .. ....+...|++++|+|++++ ++++.|++|+|||+.+++..
T Consensus       244 ~d~~i~i~d~~~~~---~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         244 ESSNVEVLHVNKPD---KY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TTSCEEEEETTSSC---EE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cccccccccccccc---cc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            67789999998873   32 33345678999999998765 56778999999999988753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.1e-22  Score=167.36  Aligned_cols=189  Identities=11%  Similarity=0.112  Sum_probs=141.2

Q ss_pred             ccccCCCCC-EEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPP-YALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v-~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .|.+|...| .++++++++|+|||.|++|+||| .++++++++.     +|..+|++++|+|+ .+|++|+.|+ +++|+
T Consensus         7 tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-----~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-----GHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE-----CCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             EECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE-----CCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            378998876 67899999999999999999999 7899988776     89999999999996 5889999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-------------------------
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-------------------------  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-------------------------  133 (254)
                      +.........   ...........+.++|+++++++++.|+.|++||+...+...                         
T Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          81 IKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             TTTTEEEEEE---CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccc---ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            7643322211   111122356678899999999999999999999975432210                         


Q ss_pred             ------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCc
Q psy12788        134 ------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       134 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~  200 (254)
                                  .+.+.+....+..+++||+.++   ............+..+.+++++. +++++.|+++++||+.+++
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eeccccccccccccceeeeecccceeeeeecccc---cceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence                        1122334445678889999887   44444444556788999998765 5667889999999999886


Q ss_pred             ee
Q psy12788        201 LS  202 (254)
Q Consensus       201 ~~  202 (254)
                      ..
T Consensus       235 ~~  236 (355)
T d1nexb2         235 LM  236 (355)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=6.9e-22  Score=168.54  Aligned_cols=183  Identities=13%  Similarity=0.039  Sum_probs=136.2

Q ss_pred             CCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          6 HPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         6 h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      +...+..++++|  +.|+.++ ++.|.+|| .+++..+.+.     +|...|++++|+|+|++||+|+.|+ +++||+..
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~-----~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-----EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc-----CCCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence            344666788887  4677664 66799999 6777665553     7999999999999999999999996 99999765


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEe----------------ecee-EEEEe
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIW----------------KGKF-EMIYV  142 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~----------------~~~~-~~~~~  142 (254)
                      ......   .....+..+|.+++|+|||++|++++.  +..+++|+..+++...                .+.+ .++..
T Consensus        90 ~~~~~~---~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          90 TTHILK---TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             TTCCEE---EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             cccccc---cccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            443321   112345678999999999999999986  4568999975543221                1222 23344


Q ss_pred             cCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCc
Q psy12788        143 SPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNL  200 (254)
Q Consensus       143 ~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~  200 (254)
                      .++.+++||+.++   ........+..+|+++.++|+++++ +++.|+.+++||+.+++
T Consensus       167 ~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         167 DDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             TTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccccccccc---ccccccccccccccccccCcccccccccccccccccccccccc
Confidence            5778999999987   4555555667789999999987654 57789999999998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.2e-20  Score=153.15  Aligned_cols=233  Identities=11%  Similarity=0.137  Sum_probs=154.3

Q ss_pred             cccCCCCCE-EEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          3 VVQHPVPPY-ALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         3 l~~h~~~v~-~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      |.+|...|. +++|++++|||||.|++|+||| .++++++++.     +|...|.+++|+|+  +|++|+.|+ +++|+.
T Consensus        12 l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-----~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-----GHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-----CCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             ECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-----CCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            779999875 6788889999999999999999 7899987664     89999999999985  899999996 899986


Q ss_pred             cCCCcceeecCc----e---------------------ecC--------CCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         80 SPSKSVWEEQPN----K---------------------TIP--------NLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        80 ~~~~~~~~~~~~----~---------------------~~~--------~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      ............    .                     ...        .........+.+...++++++.|+.|++||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            542221110000    0                     000        0001122355667788999999999999997


Q ss_pred             eeeeeEe--------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEE
Q psy12788        127 VLKRTIW--------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLL  192 (254)
Q Consensus       127 ~~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~  192 (254)
                      ...+...              .+.+.++...++.+++||+..+   ..+.....+...+..+++++ +.+++++.|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~  240 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD-NILVSGNADSTVK  240 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET-TEEEEEETTSCEE
T ss_pred             ccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC-CEEEEEcCCCEEE
Confidence            6543322              2334556677889999999887   34444444556788888885 5778889999999


Q ss_pred             EEeccCCceeeEeC-CCCCCc--eeEEeeCceEEEEEeCCeeEEEEeecCeeeeeee
Q psy12788        193 LGDLHRNLLSEVLW-PDSGRN--EKFYFDNVTVCLVFNAGELSIIEYGNNEILTCVR  246 (254)
Q Consensus       193 i~dl~~~~~~~~~~-~~~~g~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  246 (254)
                      +||+...+.....- ......  ..+.+++.....+-.+|.+.+++....+.+....
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            99998876433221 101111  1122334444444444666666665555544443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-20  Score=161.56  Aligned_cols=188  Identities=17%  Similarity=0.219  Sum_probs=134.7

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      ..|...|.+++|+|+  +|++|+.|++|++|| ..++.+..+.     +|...|.+++|+|++..+++|+.++ +++||.
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccccccccc-----cccccccccccccccccccccccceeeeeeec
Confidence            357788999999984  799999999999999 6777775543     7889999999999999999999886 899996


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEe-cCCCeEEEeecCCcEEEEeeeeeeeEe-----------------------ec
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWK-RDGSRIACGGLCGSVELFESVLKRTIW-----------------------KG  135 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdG~~la~g~~dg~v~iwd~~~~~~~~-----------------------~~  135 (254)
                      .....      .....+......+.|+ +||++|++|+.||.|++||...+....                       ++
T Consensus       193 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         193 RTGQC------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             TTTEE------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             ccccc------ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence            43221      1122233444555554 589999999999999999976443221                       12


Q ss_pred             eeEEEEecCCeEEEEeCCCCCc---------eeeEEEEecCCCceeEEEEecCcEEE-EEECCCcEEEEeccCCcee
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESK---------GRGVILKSQYGYEITDVAIMGNDRYL-VARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~---------~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~d~~i~i~dl~~~~~~  202 (254)
                      .+.++...++.+++||+.++..         .........+...|.+++|+++++++ +++.|++|+|||+.+++..
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            2344555677899999876531         01122223455689999999988765 5778999999999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.7e-22  Score=166.22  Aligned_cols=181  Identities=10%  Similarity=0.066  Sum_probs=126.3

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      .|.+|..+|.+|+|++  |+|||.|++|++||.....        . +|...|.+++|+|++. +++++.|+ +++|+..
T Consensus         8 ~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~--------~-~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~   75 (287)
T d1pgua2           8 TISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH--------Q-DHSNLIVSLDNSKAQE-YSSISWDDTLKVNGIT   75 (287)
T ss_dssp             EECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE--------C-CCCSCEEEEECCSTTC-CEEEETTTEEEETTEE
T ss_pred             EECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC--------C-CCCCCEEEEEecCCCe-EEEEeecccccccccc
Confidence            4789999999999987  9999999999999832111        1 5666777777776543 45566553 6666532


Q ss_pred             CCC--------------------------------c---------------------------------ceeec-----C
Q psy12788         81 PSK--------------------------------S---------------------------------VWEEQ-----P   90 (254)
Q Consensus        81 ~~~--------------------------------~---------------------------------~~~~~-----~   90 (254)
                      ...                                .                                 .|...     .
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~  155 (287)
T d1pgua2          76 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF  155 (287)
T ss_dssp             EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred             ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceee
Confidence            100                                0                                 00000     0


Q ss_pred             ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe---------------------------eceeEEEEec
Q psy12788         91 NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW---------------------------KGKFEMIYVS  143 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~  143 (254)
                      .....+...+++++|+|||++||+|+.||.|++||+..++...                           +..+.++...
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence            0001234579999999999999999999999999975443221                           1123445566


Q ss_pred             CCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEec
Q psy12788        144 PSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDL  196 (254)
Q Consensus       144 ~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl  196 (254)
                      ++.+++|++..+.  ..+.....+...|+++.|++++++++++.|++++|||+
T Consensus       236 D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         236 DTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            8899999997753  33444344567899999999889999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-19  Score=148.03  Aligned_cols=183  Identities=12%  Similarity=0.095  Sum_probs=135.2

Q ss_pred             ccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          4 VQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      .+|...|++++|++++|||||.|++|+||| .++++++++.     +|..+|++++|  ++++|++|+.|+ +++|++..
T Consensus        12 ~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-----~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          12 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-----GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-----CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCCCEeeeec--ccceeeccccccccccccccc
Confidence            357788999999999999999999999999 7899997775     89999999887  678999999996 99999764


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe-----------------eceeEEEEecC
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW-----------------KGKFEMIYVSP  144 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~-----------------~~~~~~~~~~~  144 (254)
                      ......      . .........+.+....++++..++.+.+||........                 ...+..+...+
T Consensus        85 ~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          85 GEMLNT------L-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             CCEEEE------E-CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccc------c-cccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            432211      1 11223345677788899999999999999975432110                 12234456678


Q ss_pred             CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCceeeE
Q psy12788        145 SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       145 ~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~  204 (254)
                      +.+++|++.++.   .+.....+...|..+.+++ ..+++++.|++++|||+.+.+....
T Consensus       158 ~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~  213 (293)
T d1p22a2         158 RTIKVWNTSTCE---FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRV  213 (293)
T ss_dssp             SEEEEEETTTCC---EEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceeeecCCCCc---EEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeee
Confidence            899999998874   2222223345677777774 5677888999999999998876543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.5e-20  Score=157.58  Aligned_cols=191  Identities=11%  Similarity=0.053  Sum_probs=132.9

Q ss_pred             cccC-CCCCEEEEecC----CeEEEEeCCCcEEEEe-CCCCEE----EEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC
Q psy12788          3 VVQH-PVPPYALSWPA----GYILAAGSDRIVTIYE-SDGRVH----RIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD   72 (254)
Q Consensus         3 l~~h-~~~v~~l~w~~----~~l~s~s~D~~i~vWd-~~g~~~----~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d   72 (254)
                      +.+| ...|.+++|+|    .+|++|+.|++|+||| ..++..    ........ .|..+|.+++|+|+|+++++++.+
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeecc
Confidence            3466 56899999986    3799999999999998 433211    11111122 577899999999999999887643


Q ss_pred             --c-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCe-EEEeecCCcEEEEeeeeeeeEe---------------
Q psy12788         73 --N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR-IACGGLCGSVELFESVLKRTIW---------------  133 (254)
Q Consensus        73 --~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~-la~g~~dg~v~iwd~~~~~~~~---------------  133 (254)
                        . +++|+|+.......     ...|...|++++|+|++.+ +++++.||.+++||....+...               
T Consensus       137 ~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v  211 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGE-----VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  211 (325)
T ss_dssp             SSCSEEEEETTTCCEEEE-----CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             ccceEEEEeeccccccee-----eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEe
Confidence              3 78999875443221     2346778999999999986 6778999999999964322111               


Q ss_pred             -----eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEe---cCc-EEEEEECCCcEEEEeccCCcee
Q psy12788        134 -----KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIM---GND-RYLVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       134 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~---~~~-~~~v~~~d~~i~i~dl~~~~~~  202 (254)
                           .+.+.++...++.+++||+.++.  ....+ ..+...+..+.|+   +++ .+++++.|++++|||++++++.
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l-~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCC--EEEEC-CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeccccceeccccccccceeeeeecccc--ccccc-cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence                 12344556678899999998884  22222 2233455554444   344 5677889999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.6e-20  Score=158.19  Aligned_cols=183  Identities=13%  Similarity=0.085  Sum_probs=131.4

Q ss_pred             ccCCCCCEEEEecCC--eEEEEe--CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCE-EEEEeCCc-EEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAG--SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQA-VVVGSYDN-IKL   76 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s--~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~-la~gs~d~-i~l   76 (254)
                      ..|..+|.+++|+++  .|++++  .|+.+++|+ .+++++..+.     +|...|++++|+|++++ +++++.|+ +++
T Consensus       112 ~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~  186 (325)
T d1pgua1         112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-----GHSQRINACHLKQSRPMRSMTVGDDGSVVF  186 (325)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-----SCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-----ecccccccccccccccceEEEeeccccccc
Confidence            458889999999874  566655  467899999 7788886654     78899999999999876 66788886 899


Q ss_pred             EEecCCCcceeecCceecCCCCcEeEEEEecC-CCeEEEeecCCcEEEEeeeeeeeEe-------------------ece
Q psy12788         77 FAWSPSKSVWEEQPNKTIPNLYTISALSWKRD-GSRIACGGLCGSVELFESVLKRTIW-------------------KGK  136 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-G~~la~g~~dg~v~iwd~~~~~~~~-------------------~~~  136 (254)
                      |+....+.....  .....+...|++++|+|| +++|++|+.||.|++||..+++...                   ++.
T Consensus       187 ~d~~~~~~~~~~--~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         187 YQGPPFKFSASD--RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             EETTTBEEEEEE--CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred             ccccccccceec--ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCC
Confidence            995432211111  112234567999999997 6899999999999999986554332                   123


Q ss_pred             eEEEEecCCeEEEEeCCCCCceeeEEEEecCCC--ceeEEEE--ecCcEEEEEECCCcEEEEec
Q psy12788        137 FEMIYVSPSQVLVKPLSGESKGRGVILKSQYGY--EITDVAI--MGNDRYLVARTPDTLLLGDL  196 (254)
Q Consensus       137 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~--~i~~i~~--~~~~~~~v~~~d~~i~i~dl  196 (254)
                      +.++...|+.+++||+.++   +.+.....+++  .+..+++  .+++.+++++.|++|+||||
T Consensus       265 ~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         265 KFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCC---CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4556677889999999988   33322222333  3444444  45557888899999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.6e-20  Score=151.97  Aligned_cols=180  Identities=12%  Similarity=0.167  Sum_probs=140.1

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      +.+|...+.++.|++  +.|++++.|+.+++|| .+++.+..+.     +|...+.+++|+|++++|++|+.|+ +++|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-----cCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence            457888999999987  4799999999999999 7888887775     6788999999999999999999996 99999


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCC--------------------CeEEEeecCCcEEEEeeeeeeeEe-----
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDG--------------------SRIACGGLCGSVELFESVLKRTIW-----  133 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG--------------------~~la~g~~dg~v~iwd~~~~~~~~-----  133 (254)
                      ........     ....+...+.+++|+|++                    .++++|+.||.|++||..+++.+.     
T Consensus       172 ~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         172 VATKECKA-----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             TTTCCEEE-----EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eccceeeE-----EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            76543321     122345678888887764                    479999999999999987655432     


Q ss_pred             -----------eceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEe
Q psy12788        134 -----------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGD  195 (254)
Q Consensus       134 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~d  195 (254)
                                 .+.+.++...++.+++||+.++.  ....+ ..+..+|++++|+++++ +++++.|++|+|||
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc--EEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                       12345556678899999998874  23333 34567899999999875 56688899999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=6.5e-21  Score=159.29  Aligned_cols=158  Identities=16%  Similarity=0.219  Sum_probs=113.8

Q ss_pred             CCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCC
Q psy12788          7 PVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPS   82 (254)
Q Consensus         7 ~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~   82 (254)
                      ...+.+++|+|+  +|++|+.|+.|++|| .+++......   . .|..+|++++|+|++++|++++.|+ +++||....
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT---I-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE---E-ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---c-ccccccccccccccccccccccccccccccccccc
Confidence            345678889874  799999999999999 4554332221   1 5778999999999999999999985 999997543


Q ss_pred             CcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEE
Q psy12788         83 KSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVI  162 (254)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  162 (254)
                      ......  .....|...|++++|+|+|++||+|+.||.|++||+..+...                           ...
T Consensus       212 ~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~---------------------------~~~  262 (299)
T d1nr0a2         212 FELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH---------------------------PII  262 (299)
T ss_dssp             TEESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC---------------------------CEE
T ss_pred             cccccc--ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc---------------------------eEE
Confidence            321111  122335678999999999999999999999999997533211                           011


Q ss_pred             EE-ecCCCceeEEEEecCcEEEEEECCCcEEEEecc
Q psy12788        163 LK-SQYGYEITDVAIMGNDRYLVARTPDTLLLGDLH  197 (254)
Q Consensus       163 l~-s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~  197 (254)
                      .. .+....|..+.+.++..+++++.|++|+|||+.
T Consensus       263 ~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            11 122345667766655567788899999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.8e-19  Score=151.41  Aligned_cols=214  Identities=13%  Similarity=0.179  Sum_probs=146.6

Q ss_pred             ccccCCCCCEEEEecC-CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          2 RVVQHPVPPYALSWPA-GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~-~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+.+|..+|.+++|++ +.|++|+.|++|++|+ ..+++......  . .+........++|+++++++++.|+ +++|+
T Consensus        48 ~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG--H-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECC--C-SSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccc--c-cccccccccccccccceeeeecCCCcEEEEE
Confidence            4678999999999987 5899999999999999 55555544321  1 2334566788899999999999996 89999


Q ss_pred             ecCCCcce------------------------------------------------------eecCc----eecCCCCcE
Q psy12788         79 WSPSKSVW------------------------------------------------------EEQPN----KTIPNLYTI  100 (254)
Q Consensus        79 ~~~~~~~~------------------------------------------------------~~~~~----~~~~~~~~i  100 (254)
                      +.......                                                      .....    ....+...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  204 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  204 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence            75422100                                                      00000    001123467


Q ss_pred             eEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCCeEEEEeCCCCCceeeEEEEec
Q psy12788        101 SALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQ  166 (254)
Q Consensus       101 ~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  166 (254)
                      .++.|+|+++++++++.||.|++||..++....              .+.+.++...++.+++||+.+..    ..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~  280 (355)
T d1nexb2         205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS----RKFSYH  280 (355)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC----EEEEEE
T ss_pred             ccccccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccccc----eecccc
Confidence            889999999999999999999999987654432              23345566678899999998773    223233


Q ss_pred             CCCceeEE-EEecCcEEEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeCCee
Q psy12788        167 YGYEITDV-AIMGNDRYLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNAGEL  231 (254)
Q Consensus       167 ~~~~i~~i-~~~~~~~~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  231 (254)
                      . ..+..+ .++++++++++++|++|+|||++++++......   ++     .+++.++.|++..+
T Consensus       281 ~-~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~---~~-----~~~V~~v~~~~~~~  337 (355)
T d1nexb2         281 H-TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL---KD-----ADQIWSVNFKGKTL  337 (355)
T ss_dssp             C-TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT---TT-----CSEEEEEEEETTEE
T ss_pred             c-CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec---CC-----CCCEEEEEEcCCeE
Confidence            3 344444 456677899999999999999999987533222   11     12355667776543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.6e-20  Score=162.78  Aligned_cols=127  Identities=16%  Similarity=0.166  Sum_probs=99.5

Q ss_pred             cCCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeee--cCCCCCCCCEEEEEECCCCCEEEEEeCCc----EEE
Q psy12788          5 QHPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDY--TAPHYKEREFTVACSSPSGQAVVVGSYDN----IKL   76 (254)
Q Consensus         5 ~h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~--~~~~~~~~~v~~~a~sPdg~~la~gs~d~----i~l   76 (254)
                      .|...+.+++|+|+ +|++|+.|++|+||| .+++++..+..  .+. +|..+|++++|+|||++||+|+.|+    +++
T Consensus       182 ~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI-NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccc-cccceEEEcccccccceeeeecCCCCcceeee
Confidence            45667899999986 799999999999999 77887766642  234 6889999999999999999999874    789


Q ss_pred             EEecCCCcceeec--------CceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE
Q psy12788         77 FAWSPSKSVWEEQ--------PNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI  132 (254)
Q Consensus        77 ~d~~~~~~~~~~~--------~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~  132 (254)
                      ||...........        ......|...|++|+|||||++||+|+.|++|++||+.+++++
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            9976544322110        0111246678999999999999999999999999998776654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.6e-18  Score=144.30  Aligned_cols=222  Identities=10%  Similarity=-0.000  Sum_probs=143.2

Q ss_pred             cccCCCCCEEEEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCC-CEEEEEeCCc-EEEE
Q psy12788          3 VVQHPVPPYALSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSG-QAVVVGSYDN-IKLF   77 (254)
Q Consensus         3 l~~h~~~v~~l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg-~~la~gs~d~-i~l~   77 (254)
                      +.+|...|.+|+|+|  ++||+||.|++|+||| ..+.....+... . +|..+|++++|+|++ .+|++|+.|+ +++|
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-~-~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-L-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-E-ECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-c-CCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            357899999999998  4899999999999999 444332222111 1 578899999999874 5799999996 8999


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE----------------------eec
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI----------------------WKG  135 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~----------------------~~~  135 (254)
                      ++........    ....+........+.+++..+++++.++.+++||.+.+...                      ...
T Consensus        85 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          85 DLIGSPSFQA----LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             CSSSSSSEEE----CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eccccccccc----ccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9765433221    11122334556778889999999999999999997432110                      012


Q ss_pred             eeEEEEecCCeEEEEeCCCCCc-----------------------ee---------eEEEEe------------------
Q psy12788        136 KFEMIYVSPSQVLVKPLSGESK-----------------------GR---------GVILKS------------------  165 (254)
Q Consensus       136 ~~~~~~~~~~~~~v~~~~~~~~-----------------------~~---------~~~l~s------------------  165 (254)
                      ...++...++.+++|++.....                       ..         .+.+..                  
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            2344556678888888764421                       00         011110                  


Q ss_pred             --------cCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEE
Q psy12788        166 --------QYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIE  235 (254)
Q Consensus       166 --------~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~  235 (254)
                              .+...|++|+|+|++. +++|+.|++|+|||+.+++.... .  +..+       ...++.++. |++.++.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~-~--~~~~-------~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN-F--AKFN-------EDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE-C--CCCS-------SSEEEEEEECSSEEEEE
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEE-e--cCCC-------CCEEEEEEeCCCEEEEE
Confidence                    0112467899999876 56688899999999999875432 1  1111       122333443 5666666


Q ss_pred             eecCe
Q psy12788        236 YGNNE  240 (254)
Q Consensus       236 ~~~~~  240 (254)
                      .+++.
T Consensus       311 ~sdd~  315 (342)
T d1yfqa_         311 TSDDT  315 (342)
T ss_dssp             EECTH
T ss_pred             EcCCc
Confidence            66654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1e-19  Score=158.96  Aligned_cols=179  Identities=14%  Similarity=0.117  Sum_probs=117.2

Q ss_pred             CCCCCEEEEecC-------CeEEEEeCCCcEEEEe-C-CCC-------------EEEEeeecCCCCCCCCEEEEEECCCC
Q psy12788          6 HPVPPYALSWPA-------GYILAAGSDRIVTIYE-S-DGR-------------VHRIFDYTAPHYKEREFTVACSSPSG   63 (254)
Q Consensus         6 h~~~v~~l~w~~-------~~l~s~s~D~~i~vWd-~-~g~-------------~~~~~~~~~~~~~~~~v~~~a~sPdg   63 (254)
                      +...+..++|.+       +++++++.|+++++|+ . .+.             .+........ .+...+++++|+|+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM-TPSQFATSVDISERG  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS-SSCCCCCEEEECTTS
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceeccc-CCCCcEEEEEECCCC
Confidence            344566777754       3689999999999998 2 111             0111111122 345678999999998


Q ss_pred             CEEEEEeCCc-EEEEEecCCCcceeec-CceecCCCCcEeEEEEecCCCeEEEeecCCc---EEEEeeeeeeeEeeceeE
Q psy12788         64 QAVVVGSYDN-IKLFAWSPSKSVWEEQ-PNKTIPNLYTISALSWKRDGSRIACGGLCGS---VELFESVLKRTIWKGKFE  138 (254)
Q Consensus        64 ~~la~gs~d~-i~l~d~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdG~~la~g~~dg~---v~iwd~~~~~~~~~~~~~  138 (254)
                       +||+|+.|+ +++||....+...... ......|..+|++|+|||||++||+|+.|++   |++||+.+++......  
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~--  273 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS--  273 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec--
Confidence             889999996 9999976544322211 1122346779999999999999999999975   8999987665442210  


Q ss_pred             EEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee
Q psy12788        139 MIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS  202 (254)
Q Consensus       139 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~  202 (254)
                          ...       ...   ........|...|++++|+|++++ ++++.|++|+|||++++++.
T Consensus       274 ----~~~-------~~~---~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         274 ----VPT-------HSS---QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             ----BC------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ----ccc-------ccc---cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence                000       000   000011124457999999998865 45778999999999999764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3.3e-18  Score=143.45  Aligned_cols=152  Identities=12%  Similarity=0.107  Sum_probs=110.9

Q ss_pred             CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe
Q psy12788         37 RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG  115 (254)
Q Consensus        37 ~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g  115 (254)
                      +..++|.     +|...|++++|+|++++||+|+.|+ +++||+.......     ....|...|++++|+|+|+++++|
T Consensus        46 ~~~~tL~-----GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~  115 (340)
T d1tbga_          46 RTRRTLR-----GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-----AIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-----EEECSCSCEEEEEECTTSSEEEEE
T ss_pred             eeeEEEC-----CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE-----EEecccccEEeeEeeccceeeeee
Confidence            4555554     8999999999999999999999996 9999975433211     123456789999999999999999


Q ss_pred             ecCCcEEEEeeeeee----eEe---------------e------------------------------------------
Q psy12788        116 GLCGSVELFESVLKR----TIW---------------K------------------------------------------  134 (254)
Q Consensus       116 ~~dg~v~iwd~~~~~----~~~---------------~------------------------------------------  134 (254)
                      +.|+.+++|+.....    ...               .                                          
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             cccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc
Confidence            999999999843110    000               0                                          


Q ss_pred             ceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcE-EEEEECCCcEEEEeccCCce
Q psy12788        135 GKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDR-YLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d~~i~i~dl~~~~~  201 (254)
                      ..+.++...++.+++||+.++   ..+.....+...|++++|+|++. +++++.|+++++||+...+.
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEeecCceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            001122334667889999887   33333344567899999999875 45678899999999987653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4e-18  Score=142.32  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=114.9

Q ss_pred             cccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEec
Q psy12788          3 VVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWS   80 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~   80 (254)
                      +.+|...+..+.+++..|++|+.|++|++|| ..+++++.+.     +|...+.+++++|  ++|++|+.|+ +++||..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKD--NILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             ECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCCSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred             EcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----ccccceeEEecCC--CEEEEEcCCCEEEEEecc
Confidence            4578888888889889999999999999999 7788886654     6778888887764  6999999996 9999975


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRG  160 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  160 (254)
                      ........  .....+...+.+++|  +++++++|+.||.|++||+.+++.+..-              .....+     
T Consensus       246 ~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~--------------~~~~~~-----  302 (342)
T d2ovrb2         246 TGQCLQTL--QGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL--------------VTLESG-----  302 (342)
T ss_dssp             TCCEEEEE--CSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEE--------------EECTTG-----
T ss_pred             cccccccc--cccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEE--------------ecccCC-----
Confidence            43332211  111223445665555  5679999999999999998766544221              001111     


Q ss_pred             EEEEecCCCceeEEEEecCcEEEEE-ECCCc----EEEEecc
Q psy12788        161 VILKSQYGYEITDVAIMGNDRYLVA-RTPDT----LLLGDLH  197 (254)
Q Consensus       161 ~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~~----i~i~dl~  197 (254)
                           .+...|.+++|++++.++++ +.|++    +++||+.
T Consensus       303 -----~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         303 -----GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -----GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             -----CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence                 23457999999998877654 44654    8999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=3.2e-16  Score=132.57  Aligned_cols=116  Identities=14%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             ccCCCCCEEEEecCC--eEEEEeCCC--cEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEE
Q psy12788          4 VQHPVPPYALSWPAG--YILAAGSDR--IVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLF   77 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~s~D~--~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~   77 (254)
                      ..|...|.+++|+|+  .|++++.|.  .|++|| ..|+.. .+.     .|...+.+++|+|||++|++++.+. +++|
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~-----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE-----ENLGNVFAMGVDRNGKFAVVANDRFEIMTV  112 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC-----CCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee-----CCCceEEeeeecccccccceeccccccccc
Confidence            369999999999995  577766553  799999 555543 332     6788999999999999999999885 8899


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee----------cCCcEEEEeeeeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG----------LCGSVELFESVLKR  130 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~----------~dg~v~iwd~~~~~  130 (254)
                      +.......     .....+...+.+++|||||++||.+.          .++.+++||...++
T Consensus       113 ~~~~~~~~-----~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3         113 DLETGKPT-----VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             ETTTCCEE-----EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ccccccee-----eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence            86543321     11223445677888888888888654          34457888876543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.8e-17  Score=136.38  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             EEEecC-C--eEEEEeCCCcEEEEeC-CCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c--EEEEEecCCCc
Q psy12788         12 ALSWPA-G--YILAAGSDRIVTIYES-DGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N--IKLFAWSPSKS   84 (254)
Q Consensus        12 ~l~w~~-~--~l~s~s~D~~i~vWd~-~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~--i~l~d~~~~~~   84 (254)
                      .-.|+| +  ++|+++ ++.|++||. .|... .+      +|...|++++|+|||++|++++.+ +  +++||+.... 
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~-~~------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-   77 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KV------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-   77 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-EC------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEE-Ec------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-
Confidence            345776 3  677765 568999994 44444 22      577889999999999999887654 2  6788864322 


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeee
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKR  130 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~  130 (254)
                       .    .....+...|.+++|||||++|++++.++.+++|+...++
T Consensus        78 -~----~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          78 -A----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             -E----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             -E----EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence             1    2234567789999999999999999999999999975443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.1e-16  Score=142.28  Aligned_cols=178  Identities=10%  Similarity=0.047  Sum_probs=121.0

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      ++++.+.|++|+||| .++++++.+.     .+ ..+..++|||||+++++++.|+ +++||+.+........-.....+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~-----~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD-----TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE-----CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-----CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            368999999999999 8899998886     33 3689999999999999999885 89999765443211000000112


Q ss_pred             CCcEeEEEEecCCCeE-EEeecCCcEEEEeeeeeeeEee---------------------------ce-eEEEEecCCeE
Q psy12788         97 LYTISALSWKRDGSRI-ACGGLCGSVELFESVLKRTIWK---------------------------GK-FEMIYVSPSQV  147 (254)
Q Consensus        97 ~~~i~~l~~spdG~~l-a~g~~dg~v~iwd~~~~~~~~~---------------------------~~-~~~~~~~~~~~  147 (254)
                      ...+.+.+|||||++| +++..++.|++||..+++....                           +. +.++....+++
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            3456677889999986 6788899999999876543311                           00 11222334567


Q ss_pred             EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEEC-CCcEEEEeccCCceeeE
Q psy12788        148 LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VART-PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       148 ~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~-d~~i~i~dl~~~~~~~~  204 (254)
                      .+++..+.+  ...+..-..+..+..++|+|+++++ +++. ++.+.++|+.++++...
T Consensus       188 ~~~d~~~~~--~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         188 LLVDYTDLN--NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EEEETTCSS--EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEEEccCCC--cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            777776653  2222222456678899999998754 4554 55888899998876433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.4e-16  Score=129.93  Aligned_cols=121  Identities=9%  Similarity=0.031  Sum_probs=84.8

Q ss_pred             ccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEE
Q psy12788          4 VQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d   78 (254)
                      .+|..+|.+++|+++   .|++|+.|++|++|+ ..+.......   . .+........+.+++..+++++.++ +++||
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  128 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT---N-NEANLGICRICKYGDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB---S-CCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc---c-cccccccccccccccccccccccccccceee
Confidence            369999999999763   699999999999999 5555443332   1 2334456667778888999999885 89999


Q ss_pred             ecCCCcceeecC-ceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeee
Q psy12788         79 WSPSKSVWEEQP-NKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVL  128 (254)
Q Consensus        79 ~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~  128 (254)
                      ............ ..............+.+++..+++++.||.|++||+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  179 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             ccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEeccc
Confidence            753222211100 00011123456678899999999999999999999754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.5e-15  Score=120.17  Aligned_cols=184  Identities=10%  Similarity=0.107  Sum_probs=125.6

Q ss_pred             ccccCCCCCEEEEecCCeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEe
Q psy12788          2 RVVQHPVPPYALSWPAGYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAW   79 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~   79 (254)
                      .|.+|..+|.+++|++++|++|+.|++|++|+ ..+.......     .+...  ...+.+....++++..++ +++|+.
T Consensus        50 ~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          50 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-----HHCEA--VLHLRFNNGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             EECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC-----CCCSC--EEEEECCTTEEEEEETTSCEEEEEC
T ss_pred             EEecCCCCEeeeecccceeeccccccccccccccccccccccc-----ccccc--cccccccccceeecccccceeEeec
Confidence            36689999999999999999999999999999 6666654432     22222  334455566777777775 899997


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEe--------------eceeEEEEecCC
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIW--------------KGKFEMIYVSPS  145 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~  145 (254)
                      .........  .....+...|..+.+.  ...+++++.|+.|++||...++...              .+.+.++...++
T Consensus       123 ~~~~~~~~~--~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg  198 (293)
T d1p22a2         123 ASPTDITLR--RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN  198 (293)
T ss_dssp             SSSSCCEEE--EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTS
T ss_pred             ccccccccc--ccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCC
Confidence            654432221  2223455677776665  4578899999999999987654432              123445566788


Q ss_pred             eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEECCCcEEEEeccCCc
Q psy12788        146 QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHRNL  200 (254)
Q Consensus       146 ~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~~~  200 (254)
                      .+++||+.+.   ..+.....+...+..+... ...+++++.|++++|||+.+..
T Consensus       199 ~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         199 TIRLWDIECG---ACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             CEEEEETTTC---CEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEEEecccc---eeeeeecccceeeeecccc-ceEEEEEcCCCEEEEEECCCCc
Confidence            9999999987   3444434444455554433 2356778899999999987643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=3.7e-16  Score=137.83  Aligned_cols=176  Identities=10%  Similarity=0.063  Sum_probs=115.2

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCC
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      ++++++.|++|+||| .+++++.++.     .+ ..+..++|||||++|++++.|+ +++||+.+.+......-.....+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~-----~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID-----TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE-----CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-----CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence            468889999999999 8899998886     33 3589999999999999999885 89999876543221100001123


Q ss_pred             CCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee----------------ce-eEEEEecCCeEEEE--------
Q psy12788         97 LYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK----------------GK-FEMIYVSPSQVLVK--------  150 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~----------------~~-~~~~~~~~~~~~v~--------  150 (254)
                      ...+.+++|||||+++++++ .++.+++||..+++....                +. ..+....++...++        
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            34567888999999976555 789999999765443211                11 12233333333222        


Q ss_pred             ---eCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEEC-CCcEEEEeccCCcee
Q psy12788        151 ---PLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VART-PDTLLLGDLHRNLLS  202 (254)
Q Consensus       151 ---~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~~-d~~i~i~dl~~~~~~  202 (254)
                         +.....  .........+..+..++++++++++ ++.. +..+.++|+.++++.
T Consensus       188 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~  242 (426)
T d1hzua2         188 LLVNYKDID--NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  242 (426)
T ss_dssp             EEEECSSSS--SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred             EEEEecccc--ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence               222221  1112223456678899999988754 4443 557889999988764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=7e-16  Score=127.59  Aligned_cols=113  Identities=14%  Similarity=0.257  Sum_probs=89.3

Q ss_pred             cCCCCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCC----------CCEEEEEeC
Q psy12788          5 QHPVPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPS----------GQAVVVGSY   71 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPd----------g~~la~gs~   71 (254)
                      .|..++.+++|+|+  +|++|+.|+.|++|| .+++....   ... +|...|++++|+|+          +++||+|+.
T Consensus       160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSC-CCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             ccCCceeEEEeccCccccccccccccccceeecccccccc---ccc-ccccccceeeecccccccccccCCCCeeEeecC
Confidence            47788999999984  799999999999999 66655422   223 78889999999985          468999999


Q ss_pred             Cc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEee
Q psy12788         72 DN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFES  126 (254)
Q Consensus        72 d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~  126 (254)
                      |+ +++|++.......    .....|...|++++|+||+ .|++++.||.|++||+
T Consensus       236 D~~i~iw~~~~~~~~~----~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         236 DTNIFIYSVKRPMKII----KALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSCEEEEESSCTTCCE----EETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCeEE----EEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            95 9999975433221    1223577899999999997 5788999999999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=6e-15  Score=129.89  Aligned_cols=226  Identities=9%  Similarity=0.054  Sum_probs=136.8

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CCc-EEEEEecCC
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YDN-IKLFAWSPS   82 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d~-i~l~d~~~~   82 (254)
                      ..|..++|+|+  +|++++.|++|++|| .++++..........+|...+.+++|+|||+++++++ .++ +++||....
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            46899999985  799999999999999 6676544333221114556677888999999986665 554 889985532


Q ss_pred             Ccceee--------------cC------------------------------------ceecCCCCcEeEEEEecCCCeE
Q psy12788         83 KSVWEE--------------QP------------------------------------NKTIPNLYTISALSWKRDGSRI  112 (254)
Q Consensus        83 ~~~~~~--------------~~------------------------------------~~~~~~~~~i~~l~~spdG~~l  112 (254)
                      ......              ..                                    ...+.+...+..++|+|+|+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE
Confidence            211000              00                                    0001122346689999999998


Q ss_pred             EEeec-CCcEEEEeeeeeeeEeec---------------------eeEEEEecCCeEEEEeCCCCCc----eeeEEEEec
Q psy12788        113 ACGGL-CGSVELFESVLKRTIWKG---------------------KFEMIYVSPSQVLVKPLSGESK----GRGVILKSQ  166 (254)
Q Consensus       113 a~g~~-dg~v~iwd~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~s~  166 (254)
                      +++.. +..+.++|...++.....                     .+.....+++.+.+++......    .........
T Consensus       222 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g  301 (426)
T d1hzua2         222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  301 (426)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             EeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec
Confidence            88875 455778886544432110                     0112233456676776654321    011222234


Q ss_pred             CCCceeEEEEecCcEEEEEE--------CCCcEEEEeccCCce--------------------eeEeCCCCCCceeEEe-
Q psy12788        167 YGYEITDVAIMGNDRYLVAR--------TPDTLLLGDLHRNLL--------------------SEVLWPDSGRNEKFYF-  217 (254)
Q Consensus       167 ~~~~i~~i~~~~~~~~~v~~--------~d~~i~i~dl~~~~~--------------------~~~~~~~~~g~~~~~~-  217 (254)
                      ++..+..++|+|++++++..        .+++++|||+.+++.                    ..+.|+ |+|+..+.- 
T Consensus       302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS-pDGk~i~vs~  380 (426)
T d1hzua2         302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN-KRGDEVWFSV  380 (426)
T ss_dssp             SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC-SSSSEEEEEE
T ss_pred             CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC-CCCCEEEEEE
Confidence            56789999999999887742        368999999988753                    234566 667655431 


Q ss_pred             ----eCceEEEEEeCCeeEEE
Q psy12788        218 ----DNVTVCLVFNAGELSII  234 (254)
Q Consensus       218 ----~~~~~~~~~~~g~~~~~  234 (254)
                          +.+....+|+...+.+.
T Consensus       381 ~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         381 WNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             CCCTTSCCEEEEEETTTTEEE
T ss_pred             ecCCCCCCeEEEEECCCCeEE
Confidence                12344555666544443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=2.9e-14  Score=118.96  Aligned_cols=63  Identities=13%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCCc-EEEEEecCCC
Q psy12788         18 GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYDN-IKLFAWSPSK   83 (254)
Q Consensus        18 ~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d~-i~l~d~~~~~   83 (254)
                      ++|++++.|++|+||| .++++++++...   .+...+.+++|+|||++++ +++.++ +++||+.+.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~---~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC---CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            4799999999999999 888888877532   2334578899999999874 556664 9999976544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=2.3e-14  Score=119.99  Aligned_cols=113  Identities=11%  Similarity=0.071  Sum_probs=77.8

Q ss_pred             EEecC--CeEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEE-EeCCc-EEEEEecCCCccee
Q psy12788         13 LSWPA--GYILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVV-GSYDN-IKLFAWSPSKSVWE   87 (254)
Q Consensus        13 l~w~~--~~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~-gs~d~-i~l~d~~~~~~~~~   87 (254)
                      +++++  ++|++++.|++|.+|| .++++++++..    ++...+.+++|+|||+++.+ ++.++ +++||+...+....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~----~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc----CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            45665  4899999999999999 88888877752    34456789999999998754 55554 89999765433221


Q ss_pred             ecCcee-cCCCCcEeEEEEecCCCeEEEee------------cCCcEEEEeeeee
Q psy12788         88 EQPNKT-IPNLYTISALSWKRDGSRIACGG------------LCGSVELFESVLK  129 (254)
Q Consensus        88 ~~~~~~-~~~~~~i~~l~~spdG~~la~g~------------~dg~v~iwd~~~~  129 (254)
                      ...... ......+..++|||||+++++++            .++.+.+||..++
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            100000 00112467899999999998876            3677888876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=6.2e-14  Score=116.88  Aligned_cols=188  Identities=14%  Similarity=0.170  Sum_probs=121.0

Q ss_pred             CCCCCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---------
Q psy12788          6 HPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---------   72 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---------   72 (254)
                      +...|.+++|+|+  +| ++++.|+.|++|| .+|+++..+.......+...+..++|+|||++++++..+         
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            4556889999985  44 5777899999999 889988777532110112345579999999999887542         


Q ss_pred             ----cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEee--------------
Q psy12788         73 ----NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWK--------------  134 (254)
Q Consensus        73 ----~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~--------------  134 (254)
                          .+.+||......      ...+.....+..++|+|||+++++++.  .+.+||..+++....              
T Consensus       112 ~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  183 (337)
T d1pbyb_         112 VQPTRVALYDAETLSR------RKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQP  183 (337)
T ss_dssp             ECCCEEEEEETTTTEE------EEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred             ccccceeeccccCCeE------EEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecC
Confidence                244566432211      122334456888999999999999864  466787543221100              


Q ss_pred             ---------------------------------------------ce-------------eEE--------EEecCCeEE
Q psy12788        135 ---------------------------------------------GK-------------FEM--------IYVSPSQVL  148 (254)
Q Consensus       135 ---------------------------------------------~~-------------~~~--------~~~~~~~~~  148 (254)
                                                                   +.             +..        .+..++.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  263 (337)
T d1pbyb_         184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE  263 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEE
T ss_pred             CcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEE
Confidence                                                         00             000        012234577


Q ss_pred             EEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEECCCcEEEEeccCCcee-eEe
Q psy12788        149 VKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVARTPDTLLLGDLHRNLLS-EVL  205 (254)
Q Consensus       149 v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~d~~i~i~dl~~~~~~-~~~  205 (254)
                      +||+.++.    ...+-..+..+.+++|+|++++ ++++.+++|.|||+++++.. .+.
T Consensus       264 v~d~~~~~----~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         264 SFDLEKNA----SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEETTTTE----EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCc----EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            88888773    2222345678899999998865 56777889999999988643 443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=4.4e-13  Score=111.90  Aligned_cols=99  Identities=12%  Similarity=0.229  Sum_probs=70.1

Q ss_pred             EEEEeCCCcEEEEe--CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC-C-cEEEEEecCCCcceeecCcee
Q psy12788         20 ILAAGSDRIVTIYE--SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY-D-NIKLFAWSPSKSVWEEQPNKT   93 (254)
Q Consensus        20 l~s~s~D~~i~vWd--~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~-d-~i~l~d~~~~~~~~~~~~~~~   93 (254)
                      +++++.|++|++|+  .+|.  .++.+      .|...+..++|||||++|++++. | .+++|++.........  ...
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~------~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~--~~~   78 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAE   78 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE------cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--eee
Confidence            57888999999999  3333  23333      35678999999999999866554 5 4899998765443222  112


Q ss_pred             cCCCCcEeEEEEecCCCeEEEeec-CCcEEEEee
Q psy12788         94 IPNLYTISALSWKRDGSRIACGGL-CGSVELFES  126 (254)
Q Consensus        94 ~~~~~~i~~l~~spdG~~la~g~~-dg~v~iwd~  126 (254)
                      ......+..++|||||++|++++. ++.|.+|+.
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            223345778999999999999885 667888864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.57  E-value=2.1e-12  Score=105.93  Aligned_cols=181  Identities=15%  Similarity=0.112  Sum_probs=116.3

Q ss_pred             CCCCCEEEEecCC--eE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEEEEe
Q psy12788          6 HPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAW   79 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l~d~   79 (254)
                      +...|..++|+|+  +| ++++.+++|++|| .++++++++.     .+ ..+..++|+|+|+++++.+.+ . +++|+.
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----CS-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----cc-ccccccccccccccccccccccceeeeccc
Confidence            3456789999985  45 6777899999999 7888887775     33 357899999999987766544 4 778885


Q ss_pred             cCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeeeeEee-----ceeEEEEecC---------
Q psy12788         80 SPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKRTIWK-----GKFEMIYVSP---------  144 (254)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~---------  144 (254)
                      .....      ...+.+...+..+.|+|||++++.++ .++.+.+|+..+++....     ....+.+..+         
T Consensus       104 ~~~~~------~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         104 TSNTV------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             TTTEE------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             cccee------eeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecc
Confidence            43221      22334556788999999999876554 577889999765443321     1122233322         


Q ss_pred             --CeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEE-EEEEC---CCcEEEEeccCCcee
Q psy12788        145 --SQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRY-LVART---PDTLLLGDLHRNLLS  202 (254)
Q Consensus       145 --~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~-~v~~~---d~~i~i~dl~~~~~~  202 (254)
                        ....+++.....    ..-....+..+..+++++++.+ +++..   ++++.+||+.++++.
T Consensus       178 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         178 DSMSISVIDTVTNS----VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             TTTEEEEEETTTTE----EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             ccccccccccccee----eeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence              234444444431    1111223456778889887653 34432   458999999988753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.46  E-value=6.5e-11  Score=96.80  Aligned_cols=166  Identities=11%  Similarity=0.127  Sum_probs=107.3

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEE-EEeCC-cEEEEEecCCCcceeecCceecCC
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVV-VGSYD-NIKLFAWSPSKSVWEEQPNKTIPN   96 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la-~gs~d-~i~l~d~~~~~~~~~~~~~~~~~~   96 (254)
                      .++.+.|++|.+|| .+++.++++..      ...+..++|+|||++|+ +++.+ .+++||+.....      ...++.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~------~~~~~~   72 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------IATVPA   72 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------EEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce------eeeeec
Confidence            45778899999999 88888877752      24578999999999875 45555 499999654322      222334


Q ss_pred             CCcEeEEEEecCCCeEEEe-ecCCcEEEEeeeeeeeEee-----ceeEEEEe-----------cCCeEEEEeCCCCCcee
Q psy12788         97 LYTISALSWKRDGSRIACG-GLCGSVELFESVLKRTIWK-----GKFEMIYV-----------SPSQVLVKPLSGESKGR  159 (254)
Q Consensus        97 ~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~~~~~~~~-----~~~~~~~~-----------~~~~~~v~~~~~~~~~~  159 (254)
                      ...+..++|++||+++++. ..++.+.+||...++....     ....+.+.           .+..+.+++..+..   
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---  149 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---  149 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---
T ss_pred             cccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc---
Confidence            4567899999999976654 4667889999765443321     11222222           23456677777662   


Q ss_pred             eEEEEecCCCceeEEEEecCcE-EEEEECC-CcEEEEeccCCce
Q psy12788        160 GVILKSQYGYEITDVAIMGNDR-YLVARTP-DTLLLGDLHRNLL  201 (254)
Q Consensus       160 ~~~l~s~~~~~i~~i~~~~~~~-~~v~~~d-~~i~i~dl~~~~~  201 (254)
                      ..... .....+..+.+++++. ++++..+ ..+.+++....++
T Consensus       150 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (301)
T d1l0qa2         150 VINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (301)
T ss_dssp             EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             eeeec-ccCCCceEEEeeccccceeeecccccccccccccceee
Confidence            22222 2234578889998765 4455554 4666777776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=2.7e-13  Score=120.01  Aligned_cols=224  Identities=8%  Similarity=-0.004  Sum_probs=126.8

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEe-CCCC--EEEEeeecCCCCCCCCEEEEEECCCCCEE-EEEeCCc-EEEEEec
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYE-SDGR--VHRIFDYTAPHYKEREFTVACSSPSGQAV-VVGSYDN-IKLFAWS   80 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~--~~~~~~~~~~~~~~~~v~~~a~sPdg~~l-a~gs~d~-i~l~d~~   80 (254)
                      ..|..++|+|+  +|++++.|+++++|| .+++  ....+.. .. +|...+.+.+|+|||++| ++++.++ +++||..
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-~~-~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec-CC-CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            46899999985  799999999999999 5555  3333321 11 344566777889999986 5666664 8999965


Q ss_pred             CCCccee--------------------------------e--c----------------CceecCCCCcEeEEEEecCCC
Q psy12788         81 PSKSVWE--------------------------------E--Q----------------PNKTIPNLYTISALSWKRDGS  110 (254)
Q Consensus        81 ~~~~~~~--------------------------------~--~----------------~~~~~~~~~~i~~l~~spdG~  110 (254)
                      .....-.                                .  .                ....+++...+..++|+|||+
T Consensus       140 t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence            4321000                                0  0                000111223467899999999


Q ss_pred             eEEEeecC-CcEEEEeeeeeeeEee---c------------------eeEEE-EecCCeEEEEeCCCCCc----------
Q psy12788        111 RIACGGLC-GSVELFESVLKRTIWK---G------------------KFEMI-YVSPSQVLVKPLSGESK----------  157 (254)
Q Consensus       111 ~la~g~~d-g~v~iwd~~~~~~~~~---~------------------~~~~~-~~~~~~~~v~~~~~~~~----------  157 (254)
                      ++++++.+ +.+.++|...++....   +                  ....+ ..++..+.+++..+...          
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~  299 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS  299 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEE
Confidence            88877764 4677778654433211   0                  00111 12244555554432210          


Q ss_pred             -----eeeEEEEecCCC--------------ceeEEEEecCc-EEEEEECCCcEEEEeccC--------CceeeEeCCCC
Q psy12788        158 -----GRGVILKSQYGY--------------EITDVAIMGND-RYLVARTPDTLLLGDLHR--------NLLSEVLWPDS  209 (254)
Q Consensus       158 -----~~~~~l~s~~~~--------------~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~--------~~~~~~~~~~~  209 (254)
                           +..+.+.++...              ...++++ +++ .+++++.|+++++||+.+        +.+..+.|+ +
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS-~  377 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN-K  377 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC-T
T ss_pred             EEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccccCCCCCcEEEeEEC-C
Confidence                 000111110000              1223443 444 355577788999998753        346778898 8


Q ss_pred             CCceeEEe-----eCceEEEEEeCCeeEEEE
Q psy12788        210 GRNEKFYF-----DNVTVCLVFNAGELSIIE  235 (254)
Q Consensus       210 ~g~~~~~~-----~~~~~~~~~~~g~~~~~~  235 (254)
                      +|+..+.-     +.+...++|++..+.+.+
T Consensus       378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         378 DGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             TSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             CCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            88766422     234556677776666544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=1.4e-10  Score=96.42  Aligned_cols=66  Identities=9%  Similarity=-0.024  Sum_probs=47.3

Q ss_pred             cCCCCCEEEEecCC--e-EEEEeCCCcEEEEe-CCCCEEEEeeecCCC-CCCCCEEEEEECCCCCEEEEEe
Q psy12788          5 QHPVPPYALSWPAG--Y-ILAAGSDRIVTIYE-SDGRVHRIFDYTAPH-YKEREFTVACSSPSGQAVVVGS   70 (254)
Q Consensus         5 ~h~~~v~~l~w~~~--~-l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~-~~~~~v~~~a~sPdg~~la~gs   70 (254)
                      .|...|.+++|+|+  + +++++.|++|++|| .+++.+..+...... .+...+..++|+|||+++.+++
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence            35667899999985  3 46777899999999 788888776532110 1112456899999999987765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.29  E-value=3.8e-09  Score=89.28  Aligned_cols=184  Identities=9%  Similarity=-0.047  Sum_probs=114.1

Q ss_pred             ccCCCCCEEEEecCC--eEEEE-----eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----
Q psy12788          4 VQHPVPPYALSWPAG--YILAA-----GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----   71 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~--~l~s~-----s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----   71 (254)
                      ..|..++..++++|+  .++..     +.+..+.+|| .+|+.+.++.     .+.  ...++|+|||++|++++.    
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-----~~~--~~~~a~SpDG~~l~va~~~~~~   89 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-----GGF--LPNPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-----CCC--CccEEEcCCCCEEEEEeecCCc
Confidence            357788899999985  45443     2345689999 8899887765     222  236899999999998753    


Q ss_pred             ------C-cEEEEEecCCCcceeecCceecCC------CCcEeEEEEecCCCeEEEeec--CCcEEEEeeeeeeeEee--
Q psy12788         72 ------D-NIKLFAWSPSKSVWEEQPNKTIPN------LYTISALSWKRDGSRIACGGL--CGSVELFESVLKRTIWK--  134 (254)
Q Consensus        72 ------d-~i~l~d~~~~~~~~~~~~~~~~~~------~~~i~~l~~spdG~~la~g~~--dg~v~iwd~~~~~~~~~--  134 (254)
                            + .+++||....+.....    ..+.      ......+.|+|||+++++...  ++.+.+|+....+....  
T Consensus        90 ~~~~~~~~~v~v~D~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVTFLPIADI----ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS  165 (373)
T ss_pred             ccccccceEEEEEECCCCcEEEEE----ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec
Confidence                  2 3789997654432211    1111      112356899999998877654  56788888754433211  


Q ss_pred             ----------cee-EEEEecCCeEEEEeCCCCCceeeEEEEec---CCC--ceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        135 ----------GKF-EMIYVSPSQVLVKPLSGESKGRGVILKSQ---YGY--EITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       135 ----------~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~~--~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                                +.. .++...++.+.+++...+..  .......   .+.  ....+.++++..++..+.++++++++..+
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA--GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee--eEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence                      111 23555677888888877631  1111110   111  23345556656677777788888888876


Q ss_pred             Cc
Q psy12788        199 NL  200 (254)
Q Consensus       199 ~~  200 (254)
                      +.
T Consensus       244 ~~  245 (373)
T d2madh_         244 AG  245 (373)
T ss_pred             Ce
Confidence            64

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=1.4e-09  Score=91.13  Aligned_cols=189  Identities=10%  Similarity=0.096  Sum_probs=114.4

Q ss_pred             EEEEecCC--eEEEE----------eCCCcEEEEe-CCCCEEEEeeecCCC--CCCCCEEEEEECCCCCEEEEEeCC--c
Q psy12788         11 YALSWPAG--YILAA----------GSDRIVTIYE-SDGRVHRIFDYTAPH--YKEREFTVACSSPSGQAVVVGSYD--N   73 (254)
Q Consensus        11 ~~l~w~~~--~l~s~----------s~D~~i~vWd-~~g~~~~~~~~~~~~--~~~~~v~~~a~sPdg~~la~gs~d--~   73 (254)
                      ..++|+|+  .|+++          +.|+.|++|| .+++.+..+......  ........++|+|+|+++++++..  .
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            37899985  46543          3478999999 788888776532210  111234568999999998887643  2


Q ss_pred             -EEEEEecCCCcceeec----------------------Cc------------------eecCCCCcEeEEEEecCCCeE
Q psy12788         74 -IKLFAWSPSKSVWEEQ----------------------PN------------------KTIPNLYTISALSWKRDGSRI  112 (254)
Q Consensus        74 -i~l~d~~~~~~~~~~~----------------------~~------------------~~~~~~~~i~~l~~spdG~~l  112 (254)
                       +.+|+...........                      ..                  ....+...+....+++++..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  209 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence             6677754322110000                      00                  000011134557888888889


Q ss_pred             EEeecCCcEEEEeeeeeeeEe------------------eceeEEEEecC--------------------CeEEEEeCCC
Q psy12788        113 ACGGLCGSVELFESVLKRTIW------------------KGKFEMIYVSP--------------------SQVLVKPLSG  154 (254)
Q Consensus       113 a~g~~dg~v~iwd~~~~~~~~------------------~~~~~~~~~~~--------------------~~~~v~~~~~  154 (254)
                      +.++.++.+.+|+...++...                  .+...+.+..+                    ..+.+||..+
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence            999999999999875443211                  01111222222                    2577888888


Q ss_pred             CCceeeEEEEecCCCceeEEEEecCcE--EEEE-ECCCcEEEEeccCCceee
Q psy12788        155 ESKGRGVILKSQYGYEITDVAIMGNDR--YLVA-RTPDTLLLGDLHRNLLSE  203 (254)
Q Consensus       155 ~~~~~~~~l~s~~~~~i~~i~~~~~~~--~~v~-~~d~~i~i~dl~~~~~~~  203 (254)
                      +.   .+. .-..+..+..++|+|+++  ++++ ..+++|.|||++++++..
T Consensus       290 ~~---~~~-~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         290 GE---RLA-KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             CC---EEE-EEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             Cc---EEE-EecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence            74   221 112355788999999885  3444 448899999999998653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.06  E-value=3.2e-08  Score=83.38  Aligned_cols=188  Identities=9%  Similarity=-0.057  Sum_probs=104.5

Q ss_pred             ccCCCCCEEEEecCC---eEEEEeCCCcEEEEe-CCCCEEEEeeecCC-CCCCCCEEEEEECCCCCEEEEEeCCcEEEEE
Q psy12788          4 VQHPVPPYALSWPAG---YILAAGSDRIVTIYE-SDGRVHRIFDYTAP-HYKEREFTVACSSPSGQAVVVGSYDNIKLFA   78 (254)
Q Consensus         4 ~~h~~~v~~l~w~~~---~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~-~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d   78 (254)
                      ..|...+.+++++++   .+++.+.|+++.+|+ ..+........... .+.......+.+++++.+++.+...++.+|+
T Consensus       161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  240 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD  240 (373)
T ss_pred             EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEE
Confidence            345556777888763   578899999999999 55655544421111 0122234567788888777665444577887


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCce
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKG  158 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  158 (254)
                      ..........  . ..........+.++|.+...++.+.|+....+-.      ..+...........+.++|..++.  
T Consensus       241 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~v~~~d~~t~~--  309 (373)
T d2madh_         241 ISAAGATNKA--P-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT------SEQSAWKLHAAAKEVTSVTGLVGQ--  309 (373)
T ss_pred             cCCCeEEEEE--e-eccccCcEEeeeeccCcceeeEEecCCCeEEEec------CCCceEEeecCCCeEEEEECCCCc--
Confidence            5432211000  0 0011122333344444444444443433322211      011112233445667788888773  


Q ss_pred             eeEEEEecCCCceeEEEEecCcE--EE-EEECCCcEEEEeccCCceeeE
Q psy12788        159 RGVILKSQYGYEITDVAIMGNDR--YL-VARTPDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       159 ~~~~l~s~~~~~i~~i~~~~~~~--~~-v~~~d~~i~i~dl~~~~~~~~  204 (254)
                       .+ ..-..+..+..++|+|+++  ++ +++.|++++|||+.+++....
T Consensus       310 -~~-~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         310 -TS-SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             -EE-EEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence             22 2224567899999999885  33 456788999999999987544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=8.1e-09  Score=86.33  Aligned_cols=168  Identities=11%  Similarity=-0.010  Sum_probs=100.2

Q ss_pred             CCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe----------CC-cEEEEEecCCCcceeec--C
Q psy12788         25 SDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS----------YD-NIKLFAWSPSKSVWEEQ--P   90 (254)
Q Consensus        25 ~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs----------~d-~i~l~d~~~~~~~~~~~--~   90 (254)
                      .+.+|.+|| .+|+.+.++.     .+  ....++|||||++|++.+          .| .+++||....+......  .
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~-----~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMID-----GG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEE-----EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CcCeEEEEECCCCcEEEEEE-----CC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            466799999 7888887775     22  223689999999887643          24 48899976544322110  0


Q ss_pred             ceecCCCCcEeEEEEecCCCeEEEee--cCCcEEEEeeeeeeeEeec-------------eeEEEEecCCeEEEEeCCCC
Q psy12788         91 NKTIPNLYTISALSWKRDGSRIACGG--LCGSVELFESVLKRTIWKG-------------KFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        91 ~~~~~~~~~i~~l~~spdG~~la~g~--~dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~  155 (254)
                      ............++|+|||+++++++  .+..+.+||..+++....-             ...+.+..+++...+.....
T Consensus        99 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~  178 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE  178 (355)
T ss_dssp             CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC
Confidence            00001112346689999999988875  4567889998665543210             11234556666555554433


Q ss_pred             CceeeEEEEecC-----CCceeEEEEecCc-EEEEEECCCcEEEEeccCCce
Q psy12788        156 SKGRGVILKSQY-----GYEITDVAIMGND-RYLVARTPDTLLLGDLHRNLL  201 (254)
Q Consensus       156 ~~~~~~~l~s~~-----~~~i~~i~~~~~~-~~~v~~~d~~i~i~dl~~~~~  201 (254)
                      .  ....+....     ...+....+.+++ .++.++.++.+++||+..+++
T Consensus       179 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         179 G--TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             S--CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             C--eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence            2  222222211     1234556666655 456666788999999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=2.8e-09  Score=90.80  Aligned_cols=101  Identities=8%  Similarity=-0.133  Sum_probs=62.7

Q ss_pred             EeCCCc--EEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC----------C-cEEEEEecCCCcceee
Q psy12788         23 AGSDRI--VTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY----------D-NIKLFAWSPSKSVWEE   88 (254)
Q Consensus        23 ~s~D~~--i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~----------d-~i~l~d~~~~~~~~~~   88 (254)
                      +..+++  +.+|| .+++.+.++.     .+..+  .++|+|||++|++.+.          | .+++||....+.....
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~-----~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i  112 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSL-----GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEE-----ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEe-----CCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence            344555  55568 6778777664     22222  5899999999887642          3 4889986544432221


Q ss_pred             c-C-ceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeeeeee
Q psy12788         89 Q-P-NKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESVLKR  130 (254)
Q Consensus        89 ~-~-~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~~~~  130 (254)
                      . . ............++|||||++|++++ .++.+.+||+.+++
T Consensus       113 ~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_         113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             cCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            0 0 00000011234699999999999887 46999999975443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=4.6e-09  Score=86.81  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             cccCCCCCEEEEecCC--eE-EEEeCCCcEEEEe-CCC-CEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EE
Q psy12788          3 VVQHPVPPYALSWPAG--YI-LAAGSDRIVTIYE-SDG-RVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l-~s~s~D~~i~vWd-~~g-~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~   75 (254)
                      ...|+..|..|+|+|+  +| +++..|++|++|+ ..+ ..+......   .+...+..++|+|||++|++++.+ . ++
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~---~~~~~p~~l~~spDg~~l~v~~~~~~~v~  108 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSYNAGNVS  108 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec---ccCCCceEEEEcCCCCEEeecccCCCcee
Confidence            3468899999999995  56 4555689999998 333 222111111   233456789999999999998865 3 77


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-CcEEEEeee
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-GSVELFESV  127 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~  127 (254)
                      +|++........   .....+...+.++.++|||+++++++.+ ..+.+|+..
T Consensus       109 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_         109 VTRLEDGLPVGV---VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             EEEEETTEEEEE---EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eeccccccceec---ccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence            887654332211   1122344568889999999998888754 568888864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.75  E-value=2e-08  Score=88.12  Aligned_cols=118  Identities=17%  Similarity=0.104  Sum_probs=78.5

Q ss_pred             ccccCCCCCEEEEecCC--eEEEEeC---------CCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe
Q psy12788          2 RVVQHPVPPYALSWPAG--YILAAGS---------DRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS   70 (254)
Q Consensus         2 ~l~~h~~~v~~l~w~~~--~l~s~s~---------D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs   70 (254)
                      ++.+|...|.++.|+|+  .|+.++.         ++.+.+||..+..+..    +. .++..+..++|||||+.+|...
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~----l~-~~~~~~~~~~~SPDG~~ia~~~  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EE-RIPNNTQWVTWSPVGHKLAYVW  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SS-CCCTTEEEEEECSSTTCEEEEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc----cc-cCCccccccccccCcceeeEee
Confidence            35567788999999995  6777643         4578899944444433    33 6778899999999999999987


Q ss_pred             CCcEEEEEecCCCcceeecCc-----ee---------cCCCCcEeEEEEecCCCeEEEeecCCc-EEEEe
Q psy12788         71 YDNIKLFAWSPSKSVWEEQPN-----KT---------IPNLYTISALSWKRDGSRIACGGLCGS-VELFE  125 (254)
Q Consensus        71 ~d~i~l~d~~~~~~~~~~~~~-----~~---------~~~~~~i~~l~~spdG~~la~g~~dg~-v~iwd  125 (254)
                      .+.+.+++...... ......     ..         .........+.|||||++||....|.+ |..|+
T Consensus       131 ~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         131 NNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cccceEEECCCCce-eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            66777887543321 111000     00         001123566889999999999987654 55554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=5e-08  Score=85.58  Aligned_cols=110  Identities=12%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             EEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeee-cCCCCCCCCEEEEEECCCCCEEEEEeC---------Cc-EEEE
Q psy12788         11 YALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDY-TAPHYKEREFTVACSSPSGQAVVVGSY---------DN-IKLF   77 (254)
Q Consensus        11 ~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~-~~~~~~~~~v~~~a~sPdg~~la~gs~---------d~-i~l~   77 (254)
                      ..+.|.++ .++. ..|+.+.+|| .+|+....++. .+. .|...|.+++|||||++||.++.         ++ +.||
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhh-hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45778764 3443 3578899999 77776655542 233 56678999999999999998753         22 4577


Q ss_pred             EecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeee
Q psy12788         78 AWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLK  129 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~  129 (254)
                      |+..  +..    .....+...+..+.|||||++||.. .++.+.+|+...+
T Consensus        98 d~~~--~~~----~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g  142 (470)
T d2bgra1          98 DLNK--RQL----ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (470)
T ss_dssp             ETTT--TEE----CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             ECCC--Ccc----cccccCCccccccccccCcceeeEe-ecccceEEECCCC
Confidence            7543  221    1122345678999999999999985 5788999987644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.67  E-value=2.4e-06  Score=70.60  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCcc
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKSV   85 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~~   85 (254)
                      .+..++++++  ++++...+++|..|+.+|+.....      .....+.+++|+|||+++++...+ .+..++.......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE------cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            3667899884  677777899999999888754322      234678999999999998887655 4667776543332


Q ss_pred             eeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         86 WEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        86 ~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ...  ..........+.+++.|+|+++++-+.++.+..+|..
T Consensus       103 ~~~--~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1         103 VET--LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             EEE--EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             eee--ccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence            211  1222334568899999999999988888888777754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=4.9e-05  Score=61.06  Aligned_cols=219  Identities=9%  Similarity=0.034  Sum_probs=111.9

Q ss_pred             CCCCCEEEEecCC--eEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecC
Q psy12788          6 HPVPPYALSWPAG--YIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSP   81 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~   81 (254)
                      |...|..|+++++  ..+ ..+..+.+..++..+.....+.  .  +-......++++|+|+++++...+. +++++  .
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~--~--~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~--~   85 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--F--NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA--G   85 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC--C--CSCCSCCCEEECTTCCEEEEETTTEEEEECT--T
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec--c--CCccCceEEEEcCCCCEEEeeeeeceeeeee--e
Confidence            4467899999874  333 4455677777764333222221  1  1123457889999999887766554 44433  2


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeeeE------eeceeEEEEecCCe---------
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRTI------WKGKFEMIYVSPSQ---------  146 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~~---------  146 (254)
                      .....    ............|++.++|+++++-.....+..++.......      ...+.-+++.+++.         
T Consensus        86 ~~~~~----~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          86 SNNQT----VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             CSCCE----ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             cccee----eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence            12211    111223356789999999998887766777777764321111      01122233333333         


Q ss_pred             -EEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCceeeEeCCCCCCceeEEeeCceEEE
Q psy12788        147 -VLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLLSEVLWPDSGRNEKFYFDNVTVCL  224 (254)
Q Consensus       147 -~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~  224 (254)
                       +..++....   ....+..........|++.+++.++++.. .+.+...+........+...    .    +.. -..|
T Consensus       162 ~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~----~----~~~-P~~i  229 (260)
T d1rwia_         162 RVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT----G----LNT-PLAV  229 (260)
T ss_dssp             EEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC----S----CCC-EEEE
T ss_pred             cccccccccc---eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC----C----CCC-eEEE
Confidence             334443332   11221111112345677776666555544 34555555443322111110    0    111 2467


Q ss_pred             EEeC-CeeEEEEeecCeeeeeeec
Q psy12788        225 VFNA-GELSIIEYGNNEILTCVRI  247 (254)
Q Consensus       225 ~~~~-g~~~~~~~~~~~~~~~~~~  247 (254)
                      +++. |.+-+.+.+.+.|+ .+.|
T Consensus       230 ~~d~~g~l~vad~~~~rI~-~i~~  252 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVV-KLTS  252 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEE-EECC
T ss_pred             EEeCCCCEEEEECCCCEEE-EEeC
Confidence            7776 78877888877766 4433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.32  E-value=9.4e-05  Score=62.56  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=91.3

Q ss_pred             CCEEEEecCC--eEEEEeC-CCcEEEEe--CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe-CC-cEEEEEecC
Q psy12788          9 PPYALSWPAG--YILAAGS-DRIVTIYE--SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS-YD-NIKLFAWSP   81 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~-D~~i~vWd--~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs-~d-~i~l~d~~~   81 (254)
                      .+.+++|+|+  +|+++.. ..+|.+|+  .+|.....-..... ........++|+|+|+++-+.. .+ .+.+|+++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-CCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            4678999984  5666653 44688876  55654322111111 2235688999999999876655 34 488999875


Q ss_pred             CCcceeec-Cce-------------ecCCCCcEeEEEEecCCCeEEEeec-CC-----cEEEEeeeeeeeEeeceeEEEE
Q psy12788         82 SKSVWEEQ-PNK-------------TIPNLYTISALSWKRDGSRIACGGL-CG-----SVELFESVLKRTIWKGKFEMIY  141 (254)
Q Consensus        82 ~~~~~~~~-~~~-------------~~~~~~~i~~l~~spdG~~la~g~~-dg-----~v~iwd~~~~~~~~~~~~~~~~  141 (254)
                      ........ ...             ..........+.++|||++|+++.. +.     .|..|+...             
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-------------  291 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-------------  291 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-------------
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC-------------
Confidence            44321100 000             0011123567999999999988753 11     244443210             


Q ss_pred             ecCCeEEEEeCCCCCceeeEEE-E-ecCCCceeEEEEec-CcEEE-EEE-CCCcEEEEeccCCc
Q psy12788        142 VSPSQVLVKPLSGESKGRGVIL-K-SQYGYEITDVAIMG-NDRYL-VAR-TPDTLLLGDLHRNL  200 (254)
Q Consensus       142 ~~~~~~~v~~~~~~~~~~~~~l-~-s~~~~~i~~i~~~~-~~~~~-v~~-~d~~i~i~dl~~~~  200 (254)
                                  .+.......+ . ...|.....|+|+| +++|+ ++. .+++|.+|++....
T Consensus       292 ------------~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         292 ------------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ------------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ------------CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence                        0000000011 1 11244567899987 56755 443 46799999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.30  E-value=1.6e-06  Score=76.00  Aligned_cols=165  Identities=9%  Similarity=0.057  Sum_probs=95.5

Q ss_pred             CeE-EEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCC--EEEEEeCCcEE------------------
Q psy12788         18 GYI-LAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQ--AVVVGSYDNIK------------------   75 (254)
Q Consensus        18 ~~l-~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~--~la~gs~d~i~------------------   75 (254)
                      ++| ++...+.+|.++| .++++.+.+..    ++...+..++|+|+|+  |++.++.+.+.                  
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~~ii~i----P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTDKITHI----PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEEC----TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEeeEEec----CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            344 5656788999999 77777766542    3446789999999998  66655555442                  


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCC-cEEEEeeeeeeeEe---------------eceeEE
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCG-SVELFESVLKRTIW---------------KGKFEM  139 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg-~v~iwd~~~~~~~~---------------~~~~~~  139 (254)
                      .+|-......|+      +.-......++|+|||+++++++.+. .+..+|..+++...               +++|. 
T Consensus       160 ~iD~~t~~v~~q------I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-  232 (441)
T d1qnia2         160 AIDAETMDVAWQ------VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-  232 (441)
T ss_dssp             EEETTTCSEEEE------EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-
T ss_pred             eecCccceeeEE------EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE-
Confidence            233222121111      11223567899999999999988764 33333332221110               12221 


Q ss_pred             EEecCCeE-EEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEE--CCCcEEEEeccC
Q psy12788        140 IYVSPSQV-LVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVAR--TPDTLLLGDLHR  198 (254)
Q Consensus       140 ~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~--~d~~i~i~dl~~  198 (254)
                       +.+.+.+ .+.+.....  ....+  ..+.....++++|+++|+.++  -+.++.+||+++
T Consensus       233 -~v~~~~v~vvd~~~~~~--v~~~I--PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         233 -TIGDSKVPVVDGRGESE--FTRYI--PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             -CCTTCCCCEEECSSSCS--SEEEE--CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             -EeCCCCcEEEEcccCCc--eEEEE--eCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence             2222333 333333321  11122  224456789999999987554  378999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=2.3e-06  Score=72.16  Aligned_cols=163  Identities=9%  Similarity=-0.060  Sum_probs=88.3

Q ss_pred             CCCEEEEEECCCCCEE--EE-EeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee----------
Q psy12788         51 EREFTVACSSPSGQAV--VV-GSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG----------  116 (254)
Q Consensus        51 ~~~v~~~a~sPdg~~l--a~-gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~----------  116 (254)
                      ..+...++..|+|+..  +. ...++ .++|-++........  ....   .....++|||||++|++.+          
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~--~~~~---~~~~~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG--HSLG---AFLSLAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE--EEEE---CTTCEEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEE--EEeC---CCCCcceECCCCCEEEEEcccCccccccc
Confidence            3445556778888853  32 33443 455544443332211  1111   1223589999999999875          


Q ss_pred             cCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEE-EEE-CCCcEEEE
Q psy12788        117 LCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYL-VAR-TPDTLLLG  194 (254)
Q Consensus       117 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~-v~~-~d~~i~i~  194 (254)
                      .|+.|++||..+++....-               .+..+   ..    ...+.....++|+++++++ ++. .++++.+|
T Consensus        94 ~d~~v~v~D~~t~~~~~~i---------------~~p~~---~~----~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~  151 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADI---------------ELPDA---PR----FSVGPRVHIIGNCASSACLLFFLFGSSAAAGL  151 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEE---------------EETTS---CS----CCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred             cCCeEEEEECCCCcEeeee---------------cCCcc---ce----ecccCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence            3667888887655433210               00000   00    0112334578999998754 454 57899999


Q ss_pred             eccCCceeeEeCCCCCCceeEEeeCceEEEEEeC-CeeEEEEeecCeee
Q psy12788        195 DLHRNLLSEVLWPDSGRNEKFYFDNVTVCLVFNA-GELSIIEYGNNEIL  242 (254)
Q Consensus       195 dl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~  242 (254)
                      |+.++++....-- +.....+... ....+.++. |.+.++.+......
T Consensus       152 d~~~~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~  198 (368)
T d1mdah_         152 SVPGASDDQLTKS-ASCFHIHPGA-AATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             EETTTEEEEEEEC-SSCCCCEEEE-TTEEECCCCTTSCEEEECCSSCCC
T ss_pred             ECCCCcEeEEeec-cCcceEccCC-CceEEEEcCCCCEEEEEecCCcee
Confidence            9999986543211 2222222222 233444444 77888777755433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=0.00018  Score=58.16  Aligned_cols=156  Identities=12%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             CCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCc
Q psy12788          8 VPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKS   84 (254)
Q Consensus         8 ~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~   84 (254)
                      ..+..++.+++  .+++......+.+++.+|+.+.++..  . .+......+++.++|+++++.... .+++|+.+  ..
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~--~-~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~  188 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC--S-KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQ  188 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--T-TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CC
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccCCceeecccc--c-ccccccceeeeccceeEEeeeccccceeeeecC--Cc
Confidence            44567777653  45555555678888888988877642  2 345678899999999888776655 47788742  22


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCceeeEEE
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-GSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESKGRGVIL  163 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  163 (254)
                      ....  ............|++.|+|+++++-..+ +.|.+|+. .      +.+..++..                    
T Consensus       189 ~~~~--~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~------G~~~~~~~~--------------------  239 (279)
T d1q7fa_         189 YLRQ--IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D------GQLISALES--------------------  239 (279)
T ss_dssp             EEEE--ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T------SCEEEEEEE--------------------
T ss_pred             eeee--ecccccccCCcccccccCCeEEEEECCCCcEEEEECC-C------CCEEEEEeC--------------------
Confidence            1111  0011123457889999999977765443 45777763 1      221111100                    


Q ss_pred             EecCCCceeEEEEecCcEEEEEECCCcEEEEeccC
Q psy12788        164 KSQYGYEITDVAIMGNDRYLVARTPDTLLLGDLHR  198 (254)
Q Consensus       164 ~s~~~~~i~~i~~~~~~~~~v~~~d~~i~i~dl~~  198 (254)
                       .........|++.+++.++++..+++|+++.-..
T Consensus       240 -~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         240 -KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             -SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             -CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence             0112356788999988888888888999887543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=0.0002  Score=56.69  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EEEEEecCCCcceeecCceecCCCCcEeEEEE
Q psy12788         28 IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IKLFAWSPSKSVWEEQPNKTIPNLYTISALSW  105 (254)
Q Consensus        28 ~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~  105 (254)
                      .|.|-|.+|...+.+.     .+...+.+.+|||||+.||..... . ..+|........-    .....+........|
T Consensus        20 ~l~i~d~dG~~~~~l~-----~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH-----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCSCEEEE-----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----EEEECCSSCEEEEEE
T ss_pred             EEEEEcCCCCCcEEEe-----cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce----eEEeeeeccccccee
Confidence            4666687775444442     234568899999999999976644 2 3344433322211    122334567888999


Q ss_pred             ecCCCeEEEeec
Q psy12788        106 KRDGSRIACGGL  117 (254)
Q Consensus       106 spdG~~la~g~~  117 (254)
                      ||||+.++....
T Consensus        91 spdg~~i~~~~~  102 (269)
T d2hqsa1          91 SPDGSKLAFALS  102 (269)
T ss_dssp             CTTSSEEEEEEC
T ss_pred             cCCCCeeeEeee
Confidence            999999987664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.08  E-value=0.00029  Score=57.55  Aligned_cols=118  Identities=15%  Similarity=0.169  Sum_probs=76.4

Q ss_pred             CCEEEEEECCCCCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee
Q psy12788         52 REFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT  131 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~  131 (254)
                      ..+..+|++|||+++++...++ +||.++......     ........+..++|+|||+++++...++.+..++......
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~-~I~~i~p~g~~~-----~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVG-EIVSITPDGNQQ-----IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTT-EEEEECTTCCEE-----EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcCCEEECCCCCEEEEeCCCC-EEEEEeCCCCEE-----EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            4688999999999998877665 255555543321     1223345789999999999999988888887776531110


Q ss_pred             EeeceeEEEEecCCeEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEEEC-CCcEEEEeccCCce
Q psy12788        132 IWKGKFEMIYVSPSQVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVART-PDTLLLGDLHRNLL  201 (254)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~~~-d~~i~i~dl~~~~~  201 (254)
                                   ....+.+.             ..+...+.+++.++++++++.. ...+...|..++..
T Consensus       102 -------------~~~~~~~~-------------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1         102 -------------TVETLLTL-------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             -------------CEEEEEEC-------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             -------------ceeecccc-------------CCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence                         00011111             1234567888888888776654 55777778777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.01  E-value=0.0011  Score=54.59  Aligned_cols=113  Identities=6%  Similarity=0.050  Sum_probs=67.1

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCC-CCEEEEEECCCCCEEEEEeCCc------------
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKE-REFTVACSSPSGQAVVVGSYDN------------   73 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~-~~v~~~a~sPdg~~la~gs~d~------------   73 (254)
                      .+..++++++  .|+++...+.|...+.+|.....+..... +.. ...+.++|+|+|.+.++-....            
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~-g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecccc-ccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence            3677899874  57777666778888877765533322111 111 1357899999999988743211            


Q ss_pred             --EEEEEecCCCcceeecCceecCCCCcEeEEEEecCCC-----eEEEeecCCcEEEEeee
Q psy12788         74 --IKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGS-----RIACGGLCGSVELFESV  127 (254)
Q Consensus        74 --i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~-----~la~g~~dg~v~iwd~~  127 (254)
                        -++|.+........     ........+.++|+||+.     ++++-+..+.|..||+.
T Consensus       151 ~~G~v~~~~~dg~~~~-----~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~  206 (314)
T d1pjxa_         151 KFGSIYCFTTDGQMIQ-----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             SCEEEEEECTTSCEEE-----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCceEEEEeecCceeE-----eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence              14555443222111     111122356799999975     44555677888888864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.01  E-value=0.002  Score=54.00  Aligned_cols=75  Identities=5%  Similarity=-0.154  Sum_probs=50.5

Q ss_pred             CEEEEEECCCCCEEEEEeC--CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee
Q psy12788         53 EFTVACSSPSGQAVVVGSY--DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV  127 (254)
Q Consensus        53 ~v~~~a~sPdg~~la~gs~--d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~  127 (254)
                      .+.+++|+|||+++.+.+.  |.+.+|++.......................++|+|||+++.+.. .+++|.+|+..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            4789999999999888764  457788765433222110011112224678899999999886655 57889999864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.98  E-value=0.00024  Score=61.77  Aligned_cols=93  Identities=12%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             EEEEeCCCcEEEEe-CCCCEEEEeee-cCCC------------------------CCCCCEEEEEECCCCCEEEEEeCC-
Q psy12788         20 ILAAGSDRIVTIYE-SDGRVHRIFDY-TAPH------------------------YKEREFTVACSSPSGQAVVVGSYD-   72 (254)
Q Consensus        20 l~s~s~D~~i~vWd-~~g~~~~~~~~-~~~~------------------------~~~~~v~~~a~sPdg~~la~gs~d-   72 (254)
                      ++|++.+++|++|+ .+++.++++.. ..+.                        .|........++|||++|.+.... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            78999999999999 89998888631 1000                        022234555668999998776543 


Q ss_pred             -cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCe--EEEee
Q psy12788         73 -NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSR--IACGG  116 (254)
Q Consensus        73 -~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~--la~g~  116 (254)
                       ++.++|....+.  ..  ...+++...+..++|+|||++  ++.++
T Consensus        94 ~rVavIDl~t~k~--~~--ii~iP~g~gphgi~~spdg~t~YV~~~~  136 (441)
T d1qnia2          94 TRVARIRLDIMKT--DK--ITHIPNVQAIHGLRLQKVPKTNYVFCNA  136 (441)
T ss_dssp             TEEEEEETTTTEE--EE--EEECTTCCCEEEEEECCSSBCCEEEEEE
T ss_pred             CEEEEEECCCCcE--ee--EEecCCCCCccceEEeccCCEEEEEecc
Confidence             477888553321  11  334566678999999999994  44444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=0.00076  Score=53.16  Aligned_cols=94  Identities=12%  Similarity=0.055  Sum_probs=53.1

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEe----CCc-EEEEEecCCCcceeecCc
Q psy12788         17 AGYILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGS----YDN-IKLFAWSPSKSVWEEQPN   91 (254)
Q Consensus        17 ~~~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs----~d~-i~l~d~~~~~~~~~~~~~   91 (254)
                      .+.+|-.+. +.|.+.|..|...+.|.     .++..+...+|||||+.||-..    .+. ..+|.+....+.......
T Consensus        12 G~~v~f~~~-~dl~~~d~~~g~~~~Lt-----~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~   85 (281)
T d1k32a2          12 GDRIIFVCC-DDLWEHDLKSGSTRKIV-----SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY   85 (281)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEEEEE-----CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             CCEEEEEeC-CcEEEEECCCCCEEEEe-----cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence            445554443 45777784443344443     3556788999999999998643    222 346655443332211100


Q ss_pred             ---eecCCCCcEeEEEEecCCCeEEEee
Q psy12788         92 ---KTIPNLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        92 ---~~~~~~~~i~~l~~spdG~~la~g~  116 (254)
                         ............+|+|||+.|+...
T Consensus        86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          86 FSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             cCCCccCccccccccccCCCCCEEEEEE
Confidence               0011112456789999999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.83  E-value=0.0004  Score=56.03  Aligned_cols=114  Identities=11%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             CCCCCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC--cEEEEEecC
Q psy12788          6 HPVPPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD--NIKLFAWSP   81 (254)
Q Consensus         6 h~~~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~   81 (254)
                      +...+..++.+++  .+++....+.|+++|.+|+.+.++..  . +.......++++|+|+++++-+.+  ++.+++  .
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~--~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~--~  229 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG--E-GITNYPIGVGINSNGEILIADNHNNFNLTIFT--Q  229 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC--T-TTSCSEEEEEECTTCCEEEEECSSSCEEEEEC--T
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecCCceeeeecc--c-ccccCCcccccccCCeEEEEECCCCcEEEEEC--C
Confidence            4456677888763  56666777899999999998877641  2 344567899999999988775544  366766  2


Q ss_pred             CCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         82 SKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                       .+.+... ............|++.|||++++ ++.++.|++|...
T Consensus       230 -~G~~~~~-~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         230 -DGQLISA-LESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             -TSCEEEE-EEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             -CCCEEEE-EeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence             1221100 01111223578999999997655 5678999999753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00064  Score=59.31  Aligned_cols=190  Identities=18%  Similarity=0.187  Sum_probs=98.8

Q ss_pred             CCEEEEecCC--eEEEE---------eCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEE
Q psy12788          9 PPYALSWPAG--YILAA---------GSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKL   76 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~---------s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l   76 (254)
                      .+....|+|+  .|+..         +..+.+.++| .+++.. .+. ... .....+....|||||+.||-...+.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~-~~~-~~~~~l~~~~wSPDG~~iafv~~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLD-PPE-VSNAKLQYAGWGPKGQQLIFIFENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECC-CTT-CCSCCCSBCCBCSSTTCEEEEETTEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-ecc-Ccc-CCccccceeeeccCCceEEEEecceEEE
Confidence            4566778885  44443         3345688889 566533 332 111 2233456689999999999877666655


Q ss_pred             EEecCCCcceeecCcee---c-----------CCCCcEeEEEEecCCCeEEEeecC-CcEEEEeeeee-eeEeeceeEEE
Q psy12788         77 FAWSPSKSVWEEQPNKT---I-----------PNLYTISALSWKRDGSRIACGGLC-GSVELFESVLK-RTIWKGKFEMI  140 (254)
Q Consensus        77 ~d~~~~~~~~~~~~~~~---~-----------~~~~~i~~l~~spdG~~la~g~~d-g~v~iwd~~~~-~~~~~~~~~~~  140 (254)
                      .+...... ........   +           +-...-.++-|||||++||....| ..|..+.+... ...+.......
T Consensus       139 ~~~~~~~~-~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         139 CAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             ESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EecCCCce-EEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            55332111 11100000   0           000112468899999999998754 44555543210 00000111111


Q ss_pred             Eec------CCeEEEEeCCCCCceeeEEEEec-----CCCceeEEEEecCcEEEEEEC--CC---cEEEEeccCCceeeE
Q psy12788        141 YVS------PSQVLVKPLSGESKGRGVILKSQ-----YGYEITDVAIMGNDRYLVART--PD---TLLLGDLHRNLLSEV  204 (254)
Q Consensus       141 ~~~------~~~~~v~~~~~~~~~~~~~l~s~-----~~~~i~~i~~~~~~~~~v~~~--d~---~i~i~dl~~~~~~~~  204 (254)
                      |--      ..++.+.|+.++.  ........     ...-+..+.+++++++++...  ++   .+.++|..+|++..+
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCc--EEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence            211      1256678887663  22221111     111366788988888766433  22   567789999976533

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.0024  Score=50.69  Aligned_cols=136  Identities=11%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEEEecCCCc
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-NIKLFAWSPSKS   84 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~d~~~~~~   84 (254)
                      .|..++++++  .+++....+.+++++ .++..+  +  ..  .......+++++|+|+++++-..+ ++..++  ....
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--~--~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~--~~~~  129 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--L--PF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLA--AGSK  129 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE--C--CC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEEC--TTCS
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceee--e--ee--eeeeecccccccccceeEeeccccccccccc--cccc
Confidence            4667777763  444444444555554 333333  1  11  122467899999999988765433 243444  2222


Q ss_pred             ceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeeeeeee-E-----eeceeEEEEecCCeEEEEeCCCC
Q psy12788         85 VWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESVLKRT-I-----WKGKFEMIYVSPSQVLVKPLSGE  155 (254)
Q Consensus        85 ~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~~~~~-~-----~~~~~~~~~~~~~~~~v~~~~~~  155 (254)
                      ...   ............++++|+|+++++...++.|..+|...... .     ...+.-+++.+++.+.+.+...+
T Consensus       130 ~~~---~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         130 TQT---VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             SCE---ECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred             eee---eeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCC
Confidence            111   11112234567899999999988888888899998643211 1     12234455556667777776554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.0084  Score=46.72  Aligned_cols=188  Identities=12%  Similarity=0.149  Sum_probs=97.6

Q ss_pred             cccCCCCCEEEEecCC--eEEEEeC-CC--cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-c-EE
Q psy12788          3 VVQHPVPPYALSWPAG--YILAAGS-DR--IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-N-IK   75 (254)
Q Consensus         3 l~~h~~~v~~l~w~~~--~l~s~s~-D~--~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-~-i~   75 (254)
                      |..+...+...+|+|+  .||-... ++  .+.+.+..+.....+.     .+........|+|+|+.++..... + ..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-----SFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-----CCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-----eeecccccceecCCCCeeeEeeecCCccc
Confidence            3455667788999985  5664443 32  3555564443333332     345678899999999999887654 2 33


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee-cCCcEEEEeee--eeeeE---ee-c-eeEEEEecCC--
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG-LCGSVELFESV--LKRTI---WK-G-KFEMIYVSPS--  145 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~-~dg~v~iwd~~--~~~~~---~~-~-~~~~~~~~~~--  145 (254)
                      ++.+.......    ..............+++++..+...+ .+|...+|...  .+...   .. . .....++.++  
T Consensus       109 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  184 (269)
T d2hqsa1         109 LYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF  184 (269)
T ss_dssp             EEEEETTTCCE----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSE
T ss_pred             eeecccccccc----eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccce
Confidence            44332222111    11122233455667888887665554 45555555432  11110   00 0 0111222222  


Q ss_pred             -----------eEEEEeCCCCCceeeEEEEecCCCceeEEEEecCcEEEEE-EC---CCcEEEEeccCCceeeE
Q psy12788        146 -----------QVLVKPLSGESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RT---PDTLLLGDLHRNLLSEV  204 (254)
Q Consensus       146 -----------~~~v~~~~~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~---d~~i~i~dl~~~~~~~~  204 (254)
                                 .+.+.+...+.   ...+  ..........|+|++++++- +.   ...|.++|+..++...+
T Consensus       185 ~~~~~~~~~~~~i~~~~~~~~~---~~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         185 MVMVSSNGGQQHIAKQDLATGG---VQVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  253 (269)
T ss_dssp             EEEEEECSSCEEEEEEETTTCC---EEEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             eEEEeecCCceeeeEeeccccc---ceEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence                       23333444431   1111  12234567889999876542 22   23678889887765444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.43  E-value=0.021  Score=46.52  Aligned_cols=101  Identities=10%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             CCEEEEecCC--eEEEEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC---cEEEEEecCCC
Q psy12788          9 PPYALSWPAG--YILAAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD---NIKLFAWSPSK   83 (254)
Q Consensus         9 ~v~~l~w~~~--~l~s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d---~i~l~d~~~~~   83 (254)
                      ....++|+++  +.++-...++|..|+.+++.......    ........++|+|||+++++...+   ...++......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~----~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe----CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3468899873  45555678889999966543322211    234568899999999988775432   23455544333


Q ss_pred             cceeecCceecCCCCcEeEEEEecCCCeEEE
Q psy12788         84 SVWEEQPNKTIPNLYTISALSWKRDGSRIAC  114 (254)
Q Consensus        84 ~~~~~~~~~~~~~~~~i~~l~~spdG~~la~  114 (254)
                      ...... .........++.+++.|+|++.++
T Consensus       117 ~~~~~~-~~~~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1         117 DNLQDI-IEDLSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             CSCEEE-ECSSSSCCCEEEEEECTTSCEEEE
T ss_pred             ceeeee-ccCCCcccCCcceeEEeccceeec
Confidence            221110 001112346888999999987665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0014  Score=57.10  Aligned_cols=109  Identities=7%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             EEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeC---------Cc-EEEEEec
Q psy12788         13 LSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSY---------DN-IKLFAWS   80 (254)
Q Consensus        13 l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~---------d~-i~l~d~~   80 (254)
                      ..|.++ .++--..|+.|.+|| .+++....+. ... -....+....|||||++++....         .+ +.++|+.
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-GKK-IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-TTT-TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEc-Ccc-ccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            467653 233334578899999 5565432232 111 12346778889999999887642         22 4466754


Q ss_pred             CCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecCCcEEEEeee
Q psy12788         81 PSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLCGSVELFESV  127 (254)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~dg~v~iwd~~  127 (254)
                      ....  ... .........+....|||||+.||-.. ++.+.+.+..
T Consensus       100 ~~~~--~~l-~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~  142 (465)
T d1xfda1         100 HGDP--QSL-DPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV  142 (465)
T ss_dssp             SCCC--EEC-CCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred             CCce--eec-cCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence            3221  110 00011223566789999999999865 6667666654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.05  E-value=0.052  Score=43.56  Aligned_cols=170  Identities=11%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             CCCCCEEEEecCC-eEEEEeCCCcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----cEEEEE
Q psy12788          6 HPVPPYALSWPAG-YILAAGSDRIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----NIKLFA   78 (254)
Q Consensus         6 h~~~v~~l~w~~~-~l~s~s~D~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~i~l~d   78 (254)
                      .+..+.++++.++ .|+.++.+ .+.++| .+|+...-.+.... .....++.+.+.|+|.+.++...+     .-.+|.
T Consensus        57 ~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~-~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecC-CCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            3456778888653 56666665 588899 56654322211111 112358899999999987664321     124555


Q ss_pred             ecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeeeeeeeEeeceeEEEEecCCeEEEEeCCCCCc
Q psy12788         79 WSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESVLKRTIWKGKFEMIYVSPSQVLVKPLSGESK  157 (254)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  157 (254)
                      +...  ...    .........+.++|+||++.+..+ +..+.|..++.......                    ..+. 
T Consensus       135 ~~~g--~~~----~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~--------------------~~~~-  187 (295)
T d2ghsa1         135 VAKG--KVT----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL--------------------PTGK-  187 (295)
T ss_dssp             EETT--EEE----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC--------------------BSSC-
T ss_pred             ecCC--cEE----EEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccc--------------------cccc-
Confidence            4321  111    111223346789999999976554 45666766654211000                    0000 


Q ss_pred             eeeEEEE-ecCCCceeEEEEecCcEEEEEE-CCCcEEEEeccCCceeeEe
Q psy12788        158 GRGVILK-SQYGYEITDVAIMGNDRYLVAR-TPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       158 ~~~~~l~-s~~~~~i~~i~~~~~~~~~v~~-~d~~i~i~dl~~~~~~~~~  205 (254)
                       ....+. .........+++..++.+.+|. ..+.|..+|-....+..+.
T Consensus       188 -~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         188 -AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             -CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             -eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEec
Confidence             011111 0112345677777777766665 4567888885544444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.76  E-value=0.098  Score=42.26  Aligned_cols=103  Identities=4%  Similarity=-0.066  Sum_probs=56.6

Q ss_pred             CCEEEEecCC-eEEEEeC--------CCcEEEEeCCCCEEEEeeec-CCCCCCCCEEEEEECCCCCEEEEEeCC-cEEEE
Q psy12788          9 PPYALSWPAG-YILAAGS--------DRIVTIYESDGRVHRIFDYT-APHYKEREFTVACSSPSGQAVVVGSYD-NIKLF   77 (254)
Q Consensus         9 ~v~~l~w~~~-~l~s~s~--------D~~i~vWd~~g~~~~~~~~~-~~~~~~~~v~~~a~sPdg~~la~gs~d-~i~l~   77 (254)
                      .+...+|+++ .|...+.        +++|..||..+.....+... .. ........++|+|+|..+.++... ++..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~-~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-TEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc-cCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            4678899874 3333222        35688889443323222111 11 112346789999999877776654 57666


Q ss_pred             EecCCCcceeecCceecCC--CCcEeEEEEecCCCeEEEe
Q psy12788         78 AWSPSKSVWEEQPNKTIPN--LYTISALSWKRDGSRIACG  115 (254)
Q Consensus        78 d~~~~~~~~~~~~~~~~~~--~~~i~~l~~spdG~~la~g  115 (254)
                      +.+  ....... ......  ....+.+++.|+|++.++-
T Consensus        98 ~~~--g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          98 QTD--GTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             ETT--SCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             eCC--CcEEEEE-eccccccccCCCcEEEECCCCCEEEec
Confidence            643  2211110 011111  1246789999999988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.31  E-value=0.19  Score=40.40  Aligned_cols=171  Identities=11%  Similarity=-0.026  Sum_probs=86.4

Q ss_pred             CCCCEEEEecCC-eEEEEe-CC--C--cEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCC-----cEE
Q psy12788          7 PVPPYALSWPAG-YILAAG-SD--R--IVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYD-----NIK   75 (254)
Q Consensus         7 ~~~v~~l~w~~~-~l~s~s-~D--~--~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d-----~i~   75 (254)
                      ...+..++++++ .|+.+. .+  .  .+...+..+..+..+....  ......+.++++|+|.+.++....     .-.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCC--CcccCCcceeEEeccceeecccccccccCcce
Confidence            445778888874 333332 22  2  2344454443332221111  123457889999999987764321     123


Q ss_pred             EEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe-ecCCcEEEEeeee-eeeEeeceeEEEEecCCeEEEEeCC
Q psy12788         76 LFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG-GLCGSVELFESVL-KRTIWKGKFEMIYVSPSQVLVKPLS  153 (254)
Q Consensus        76 l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g-~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  153 (254)
                      +|-+.........    ........+.|+|+|||+.|.++ +..+.|..||+.. +.......                 
T Consensus       159 v~~~~~dg~~~~~----~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-----------------  217 (319)
T d2dg1a1         159 VYYVSPDFRTVTP----IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----------------  217 (319)
T ss_dssp             EEEECTTSCCEEE----EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----------------
T ss_pred             eEEEecccceeEE----EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc-----------------
Confidence            5555443322211    11122345789999999876444 5677888887531 11000000                 


Q ss_pred             CCCceeeEEEEecCCCceeEEEEecCcEEEEE-ECCCcEEEEeccCCceeeEe
Q psy12788        154 GESKGRGVILKSQYGYEITDVAIMGNDRYLVA-RTPDTLLLGDLHRNLLSEVL  205 (254)
Q Consensus       154 ~~~~~~~~~l~s~~~~~i~~i~~~~~~~~~v~-~~d~~i~i~dl~~~~~~~~~  205 (254)
                           ...............+++..++.+.++ ...+.|.++|-....+.++.
T Consensus       218 -----~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         218 -----ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             -----EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             -----ceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEe
Confidence                 000000000112456788777766555 45678889996433344444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.0051  Score=48.12  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             EECCC--CCEEEEEeCCcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEee
Q psy12788         58 CSSPS--GQAVVVGSYDNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        58 a~sPd--g~~la~gs~d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~  116 (254)
                      ..|||  |+.+|-.+.+.+.+.|.....  .    .....+...+...+|||||++||...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~--~----~~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGS--T----RKIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCC--E----EEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCC--E----EEEecCCCcccCEEECCCCCEEEEEE
Confidence            35799  999988776655555643222  1    11123445688899999999999654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.26  E-value=0.12  Score=42.12  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             CCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC------CcEEE
Q psy12788         52 REFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC------GSVEL  123 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d------g~v~i  123 (254)
                      ....+.++.++|++++.|+.+  .+.+||..  ...|....  .......-..++..+||++++.|+.+      ..+.+
T Consensus        76 ~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~--~~~w~~~~--~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~  151 (387)
T d1k3ia3          76 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSS--SDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV  151 (387)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGG--GTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             cceeEEEEecCCcEEEeecCCCcceeEecCc--cCcccccc--cccccccccceeeecCCceeeeccccccccccceeee
Confidence            334567899999999999766  48888854  56676532  11111222457778899999999853      46888


Q ss_pred             Eeeee
Q psy12788        124 FESVL  128 (254)
Q Consensus       124 wd~~~  128 (254)
                      ||..+
T Consensus       152 yd~~~  156 (387)
T d1k3ia3         152 YSPSS  156 (387)
T ss_dssp             EETTT
T ss_pred             ecCCC
Confidence            88654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.05  E-value=0.87  Score=36.55  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             EEEEEECCCCCEEEEEeCC------------cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeecC-Cc
Q psy12788         54 FTVACSSPSGQAVVVGSYD------------NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGLC-GS  120 (254)
Q Consensus        54 v~~~a~sPdg~~la~gs~d------------~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~d-g~  120 (254)
                      +...+...+|+.++.|+.+            .+.+||  .....|........++.....+.++.+||++++.|+.+ ..
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd--~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWD--PSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEEC--TTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEE--CCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            3445566788988887742            123555  55667754222223333334567899999999998765 57


Q ss_pred             EEEEeeeee
Q psy12788        121 VELFESVLK  129 (254)
Q Consensus       121 v~iwd~~~~  129 (254)
                      +.+||..+.
T Consensus       100 ~~~yd~~~~  108 (387)
T d1k3ia3         100 TSLYDSSSD  108 (387)
T ss_dssp             EEEEEGGGT
T ss_pred             eeEecCccC
Confidence            889987544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.32  E-value=1.7  Score=37.74  Aligned_cols=24  Identities=8%  Similarity=0.094  Sum_probs=19.1

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEe
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIF   42 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~   42 (254)
                      .++.++.++.+.+.| .+|+.+...
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeeccccceEEEEecCCCcEeeee
Confidence            467888899999999 789887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.79  E-value=3.6  Score=32.07  Aligned_cols=95  Identities=6%  Similarity=-0.085  Sum_probs=58.1

Q ss_pred             EEEEecC--CeEE-EEeCCCcEEEEeCCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCcEEEEEecCCCccee
Q psy12788         11 YALSWPA--GYIL-AAGSDRIVTIYESDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDNIKLFAWSPSKSVWE   87 (254)
Q Consensus        11 ~~l~w~~--~~l~-s~s~D~~i~vWd~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~i~l~d~~~~~~~~~   87 (254)
                      ....|++  +.|. +=-..++|..||..+.....+.      .+..+.++++.++|.++++ +.+++.++|....+  .+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~------~~~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~--~~   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA------LPFMGSALAKISDSKQLIA-SDDGLFLRDTATGV--LT   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE------CSSCEEEEEEEETTEEEEE-ETTEEEEEETTTCC--EE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE------CCCCcEEEEEecCCCEEEE-EeCccEEeecccce--ee
Confidence            4566765  2333 3334577888995444444443      2357889999999987764 56778788855332  22


Q ss_pred             ecCceecCC---CCcEeEEEEecCCCeEEEee
Q psy12788         88 EQPNKTIPN---LYTISALSWKRDGSRIACGG  116 (254)
Q Consensus        88 ~~~~~~~~~---~~~i~~l~~spdG~~la~g~  116 (254)
                      .  ....+.   ...++++...|+|++.++..
T Consensus        92 ~--l~~~~~~~~~~~~nd~~vd~~G~iw~~~~  121 (295)
T d2ghsa1          92 L--HAELESDLPGNRSNDGRMHPSGALWIGTM  121 (295)
T ss_dssp             E--EECSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             E--EeeeecCCCcccceeeEECCCCCEEEEec
Confidence            1  111111   23689999999998776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.18  E-value=2.2  Score=36.93  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEee
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIFD   43 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~~   43 (254)
                      .++.++.++.+.++| .+|+.+....
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~  354 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKN  354 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeeccccceeEEecccccccccccc
Confidence            477788899999999 7898875543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.10  E-value=2.3  Score=34.29  Aligned_cols=63  Identities=11%  Similarity=0.040  Sum_probs=36.3

Q ss_pred             CCEEEEEECCCCCEEEEEeCC--cEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEeec
Q psy12788         52 REFTVACSSPSGQAVVVGSYD--NIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACGGL  117 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs~d--~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g~~  117 (254)
                      ...+.++++||+++|.++...  +++.|++..... ...  .....-....-.+.+.+++..+.+++.
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~--~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTP--LRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEE--EEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cce--EEEecCCCCCCccEEecCCCEEEEEEC
Confidence            357899999999988777644  488888764332 211  111112234556777654333334443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.96  E-value=2.4  Score=36.67  Aligned_cols=24  Identities=8%  Similarity=0.267  Sum_probs=19.2

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEe
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIF   42 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~   42 (254)
                      .++.++.++.+.++| .+|+++...
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~  340 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAE  340 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeecCccceEEEEecCCCcccccc
Confidence            466788899999999 789887554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.71  E-value=6.8  Score=33.70  Aligned_cols=29  Identities=21%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             ecCCCeEEEeecCCcEEEEeeeeeeeEee
Q psy12788        106 KRDGSRIACGGLCGSVELFESVLKRTIWK  134 (254)
Q Consensus       106 spdG~~la~g~~dg~v~iwd~~~~~~~~~  134 (254)
                      +-.|.++.+|+.||.++-+|..+++.+++
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEE
Confidence            44666777777788888888777776644

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.34  E-value=7.6  Score=33.60  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             eEEEEeCCCcEEEEe-CCCCEEEEe
Q psy12788         19 YILAAGSDRIVTIYE-SDGRVHRIF   42 (254)
Q Consensus        19 ~l~s~s~D~~i~vWd-~~g~~~~~~   42 (254)
                      .++.+..++.+.++| .+|+++...
T Consensus       325 ~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         325 LLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeccccccceeeecCCCCceeeec
Confidence            477788889999999 789887544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.16  E-value=10  Score=30.11  Aligned_cols=69  Identities=9%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             CCEEEEEECCCCCEEEEEe--C--------------CcEEEEEecCCCcceeecCceecCCCCcEeEEEEecCCCeEEEe
Q psy12788         52 REFTVACSSPSGQAVVVGS--Y--------------DNIKLFAWSPSKSVWEEQPNKTIPNLYTISALSWKRDGSRIACG  115 (254)
Q Consensus        52 ~~v~~~a~sPdg~~la~gs--~--------------d~i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdG~~la~g  115 (254)
                      ...+.+++..+|..++|-.  .              ....+|.++....  ..    ...+....+.|++|||+++|.++
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~--~~----~~~~l~~pNGI~~s~d~~~lyVa  223 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RV----VAEGFDFANGINISPDGKYVYIA  223 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE--EE----EEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce--EE----EcCCCCccceeEECCCCCEEEEE
Confidence            4578999999999888831  1              1234555554221  11    11223467889999999987666


Q ss_pred             e-cCCcEEEEee
Q psy12788        116 G-LCGSVELFES  126 (254)
Q Consensus       116 ~-~dg~v~iwd~  126 (254)
                      . ..+.|+.|+.
T Consensus       224 ~t~~~~i~~y~~  235 (340)
T d1v04a_         224 ELLAHKIHVYEK  235 (340)
T ss_dssp             EGGGTEEEEEEE
T ss_pred             eCCCCeEEEEEe
Confidence            5 5667777775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.48  E-value=1.3  Score=38.57  Aligned_cols=80  Identities=16%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             CcEEEEe-CCCCEEEEeeecCCCCCCCCEEEEEECCCCCEEEEEeCCc-EEEEEecCCCcceeecCceecCCCCcEeEEE
Q psy12788         27 RIVTIYE-SDGRVHRIFDYTAPHYKEREFTVACSSPSGQAVVVGSYDN-IKLFAWSPSKSVWEEQPNKTIPNLYTISALS  104 (254)
Q Consensus        27 ~~i~vWd-~~g~~~~~~~~~~~~~~~~~v~~~a~sPdg~~la~gs~d~-i~l~d~~~~~~~~~~~~~~~~~~~~~i~~l~  104 (254)
                      +.+.-+| .+|+.+-.+...      .++.+-..+..|.++.+|+.|+ ++.+|-.+.+..|+.    ..+....-.-++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~------~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~----~~~~~~~~~P~t  535 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF----QTGSGIVSPPIT  535 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE----ECSSCCCSCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCC------CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE----ECCCCccccCEE
Confidence            4577778 788877665432      1222222334677777899896 899998888888865    222221112278


Q ss_pred             EecCCC-eEEEee
Q psy12788        105 WKRDGS-RIACGG  116 (254)
Q Consensus       105 ~spdG~-~la~g~  116 (254)
                      |..||+ |+|+..
T Consensus       536 y~~~G~qYv~i~a  548 (582)
T d1flga_         536 WEQDGEQYLGVTV  548 (582)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEECCEEEEEEEe
Confidence            889996 555443