Psyllid ID: psy12791
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | 2.2.26 [Sep-21-2011] | |||||||
| Q19QT7 | 405 | Cystathionine gamma-lyase | yes | N/A | 0.984 | 0.955 | 0.577 | 1e-132 | |
| Q60HG7 | 405 | Cystathionine gamma-lyase | N/A | N/A | 0.984 | 0.955 | 0.567 | 1e-129 | |
| Q8VCN5 | 398 | Cystathionine gamma-lyase | yes | N/A | 0.984 | 0.972 | 0.561 | 1e-129 | |
| P18757 | 398 | Cystathionine gamma-lyase | yes | N/A | 0.984 | 0.972 | 0.559 | 1e-129 | |
| Q58DW2 | 405 | Cystathionine gamma-lyase | yes | N/A | 0.938 | 0.911 | 0.575 | 1e-126 | |
| P32929 | 405 | Cystathionine gamma-lyase | yes | N/A | 0.984 | 0.955 | 0.572 | 1e-125 | |
| P55216 | 392 | Putative cystathionine ga | yes | N/A | 0.966 | 0.969 | 0.550 | 1e-121 | |
| Q55DV9 | 387 | Cystathionine gamma-lyase | yes | N/A | 0.974 | 0.989 | 0.514 | 1e-115 | |
| P31373 | 394 | Cystathionine gamma-lyase | yes | N/A | 0.977 | 0.974 | 0.486 | 1e-102 | |
| A2RM21 | 380 | Cystathionine beta-lyase | yes | N/A | 0.961 | 0.994 | 0.492 | 1e-101 |
| >sp|Q19QT7|CGL_PIG Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/388 (57%), Positives = 283/388 (72%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H G EP+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPT
Sbjct: 11 FLPRFQHFATQAIHAGQEPEQWASKAVVPPISLSTTFKQEAPGQH-SGFEYSRSGNPTXN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A L+ AK+ L ++SGL A +THLL AG IIS DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAVLDGAKYSLAFASGLAATVTITHLLKAGXQIISMDDVYGGTNRYFRQVAAEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP++ + D++A + +V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKSKLLEAAITPETKLVWIETPTNPILKMIDIEACAQIVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNGHSDVVMG N ++L +RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLALGADICMYSATKYMNGHSDVVMGLVSLNSETLHSRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLESHP V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM+SFY+ G FL+SL +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 RDTLIRLSVGLEDKQDLMDDLDQALKAA 397
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Sus scrofa (taxid: 9823) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1 |
| >sp|Q60HG7|CGL_MACFA Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 284/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+P I LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPHFQHFATQAIHVGQEPEQWTSRAVVPLISLSTTFKQAAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP++ + D++A + +V + DI+LV+DNT
Sbjct: 130 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPVLKMIDIEACAHIVHKRGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI + S TKYMNGHSDVVMG N + L RL+FLQNS+G VPSP
Sbjct: 190 FMSPYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNCERLHNRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 LDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPGVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESL +LPA MTH S+PK RD LGI
Sbjct: 310 CTGMITFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLVELPAIMTHASVPKNDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDEKDLLEDLDQALKAA 397
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Macaca fascicularis (taxid: 9541) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8VCN5|CGL_MOUSE Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/388 (56%), Positives = 284/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+ PI L+TTFKQ+ PGQ GFEYSRS NPTR
Sbjct: 10 FLPSFQHFATQAIHVGQEPEQWNSRAVVLPISLATTFKQDFPGQS-SGFEYSRSGNPTRN 68
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AKH L ++SGL A +THLL AGD II D+VYGGT RYF +VA + G
Sbjct: 69 CLEKAVAALDGAKHSLAFASGLAATITITHLLKAGDEIICMDEVYGGTNRYFRRVASEFG 128
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D+ A + +V + DI+LV+DNT
Sbjct: 129 LKISFVDCSKTKLLEAAITPQTKLVWIETPTNPTLKLADIGACAQIVHKRGDIILVVDNT 188
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI + S TKYMNGHSDVVMG N D L +RL+FLQNS+G VPSP
Sbjct: 189 FMSAYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNSDDLNSRLRFLQNSLGAVPSP 248
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+L RGLKTL R+++H + + VA+FLE++P V+ V++PGLPSHP HELAK Q SG
Sbjct: 249 FDCYLCCRGLKTLQVRMEKHFKNGMAVARFLETNPRVEKVVYPGLPSHPQHELAKRQCSG 308
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM+SFY+ G + + FL++L +F AESLGG ESLA+LPA MTH S+P++ R LGI
Sbjct: 309 CPGMVSFYIKGALQHAKAFLKNLKLFTLAESLGGYESLAELPAIMTHASVPEKDRATLGI 368
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
D L+RLSVG+E DL+ DLD+AL+ A
Sbjct: 369 NDTLIRLSVGLEDEQDLLEDLDRALKAA 396
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P18757|CGL_RAT Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/388 (55%), Positives = 285/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+ PI L+TTFKQ++PGQ GF YSRS NPTR
Sbjct: 10 FLPSFQHFATQAIHVGPEPEQWSSRAVVLPISLATTFKQDSPGQS-SGFVYSRSGNPTRN 68
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AKH L ++ GL A T +THLL AGD +I D+VYGGT RYF +VA + G
Sbjct: 69 CLEKAVAALDGAKHCLTFARGLAATTTITHLLKAGDEVICMDEVYGGTNRYFRRVASEFG 128
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D+KA + +V +H DI+LV+DNT
Sbjct: 129 LKISFVDCSKTKLLEAAITPQTKLVWIETPTNPTLKLADIKACAQIVHKHKDIILVVDNT 188
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI + S TKYMNGHSDVVMG D L RL+FLQNS+G VPSP
Sbjct: 189 FMSAYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVTSDDLNERLRFLQNSLGAVPSP 248
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+L RGLKTL R+++H R + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 249 FDCYLCCRGLKTLQIRMEKHFRNGMAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCTG 308
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM+SFY+ G + ++FL+++ +F AESLGG ESLA+LPA MTH S+P++ R LGI
Sbjct: 309 CPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLGI 368
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DL QAL+ A
Sbjct: 369 SDTLIRLSVGLEDEKDLLEDLGQALKAA 396
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q58DW2|CGL_BOVIN Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 272/370 (73%), Gaps = 1/370 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H+G EP+QW SQ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYSLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVATEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D++A + V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKPKLLEAAITPETKLVWIETPTNPSLKMIDIEACAHTVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNG+SDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLSLGADICMYSATKYMNGYSDVVMGLVSLNSESLHDRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM++FY+ G + FL++L +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGI 369
Query: 363 TDNLVRLSVG 372
+D L+RLSVG
Sbjct: 370 SDTLIRLSVG 379
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P32929|CGL_HUMAN Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/388 (57%), Positives = 284/388 (73%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +G
Sbjct: 250 IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LGI
Sbjct: 310 CTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDEEDLLEDLDQALKAA 397
|
Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P55216|CGL2_CAEEL Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 289/383 (75%), Gaps = 3/383 (0%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
F T A+H+G EP+QW V+PPI LS+T+KQ+ PG+P +G +YSR+ NPTR L++ +A
Sbjct: 7 FGTAAIHVGQEPEQWDMNQVVPPISLSSTYKQDNPGEP-KGHDYSRAGNPTRDVLQKNLA 65
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVA-PKIGLEVDFV 128
+LE+AKH +SSGL A +A+ +LL GDHI+ DDVYGGT RY +VA P GLEVD V
Sbjct: 66 ALEDAKHCQVFSSGLAATSAIINLLKYGDHIVCSDDVYGGTQRYIRRVAVPNHGLEVDSV 125
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAY 187
DL ++NL K IKPNTKMVW E+P+NPL+ V D+ A+ K+ +P+I++V+DNTF++ Y
Sbjct: 126 DLTDVQNLEKAIKPNTKMVWFESPSNPLLKVVDIAAVVQTAKKANPEIVVVVDNTFMSPY 185
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
+Q+ + G D+V++S+TKY+NGHSDVVMGA +T++D Q L F+Q ++G VPSPFDC+L
Sbjct: 186 FQRPISLGADVVVHSITKYINGHSDVVMGAVITDNDEFQQHLFFMQLAVGAVPSPFDCFL 245
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
V RGLKTL R++ H ++ VAK+LE++ ++ VL+P LPSHP HE+ + Q G SGM+
Sbjct: 246 VNRGLKTLHIRMRAHYENALAVAKYLEANDRIESVLYPALPSHPQHEVHEKQTKGMSGMI 305
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
SFY+ G +E+R FL +L +F AESLGG ESLA+LP+ MTH S+P ETR LGITDNL+
Sbjct: 306 SFYLKGELQESRAFLSALKVFTLAESLGGYESLAELPSIMTHASVPAETRIVLGITDNLI 365
Query: 368 RLSVGVEGYTDLIADLDQALRKA 390
R+SVG+E DL+ADLDQAL+ A
Sbjct: 366 RISVGIEDLDDLVADLDQALKIA 388
|
Caenorhabditis elegans (taxid: 6239) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/385 (51%), Positives = 264/385 (68%), Gaps = 2/385 (0%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNL 64
P + T +H G D+ + VI PI LSTTF Q +PG ++YSRS NPTR+
Sbjct: 4 PNNYKIGTNVIHAGQSADK-NTGAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAF 62
Query: 65 ERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124
E CIA+ E AK+ L ++SGL +T +THLL +GD +IS DDVYGGT RYF +VA L+
Sbjct: 63 EECIAACENAKYALSFASGLATLTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLK 122
Query: 125 VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL 184
FVDL +++L T++VWIE PTNPL+ V D+KA++ V LV+DNTF+
Sbjct: 123 FSFVDLSTLDDLKNAFTDKTRLVWIETPTNPLLKVADIKAVADYVHSR-GATLVVDNTFM 181
Query: 185 TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244
+ Y+Q L G DIV++S+TKY+NGHSD VMG TN+D L A+LKFLQNS+G VPSPFD
Sbjct: 182 SPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFD 241
Query: 245 CWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304
C+L RGLKTL R++ H++ + + FLE HP V+ V++PGLPSHP HE+ K Q G
Sbjct: 242 CFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYG 301
Query: 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITD 364
GM+ F+V G +++R FLE++ +F AESLGG+ESL +LP+ MTH S+P E R LGI+D
Sbjct: 302 GMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISD 361
Query: 365 NLVRLSVGVEGYTDLIADLDQALRK 389
L+RLSVG+E DL+AD+ QAL K
Sbjct: 362 TLIRLSVGIEDINDLLADISQALDK 386
|
Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|P31373|CYS3_YEAST Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 260/395 (65%), Gaps = 11/395 (2%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
L + FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R N
Sbjct: 3 LQESDKFATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNREN 60
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LER +A+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+
Sbjct: 61 LERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 120
Query: 124 EVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP---DILLVL 179
E F DL + +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+
Sbjct: 121 ETSFTNDL--LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVV 178
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNTFL+ Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +
Sbjct: 179 DNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAI 238
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKS 298
PSPFD WL RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++
Sbjct: 239 PSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLK 298
Query: 299 QWSGT--SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
Q GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE
Sbjct: 299 QHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEA 358
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391
R+A G+ D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 359 REASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 393
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 |
| >sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/382 (49%), Positives = 244/382 (63%), Gaps = 4/382 (1%)
Query: 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERC 67
T+ TK +H G D+ + V PI ++T+KQN GQP + +EYSRS NPTR LE
Sbjct: 2 TSIKTKVIHGGISTDK-TTGAVSVPIYQTSTYKQNGLGQPKE-YEYSRSGNPTRHALEEL 59
Query: 68 IASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127
IA LE G +SSGL + AV L SAGDHII DDVYGGT+R +V K G+ D
Sbjct: 60 IADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDL 119
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
VDL +++L K TK ++ E P+NPL+ V D+K ISA+ K H D L ++DNTF T Y
Sbjct: 120 VDLSNLDDLKAAFKEETKAIYFETPSNPLLKVLDIKEISAIAKAH-DALTLVDNTFATPY 178
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
Q+ + G DIVL+S TKY+ GHSDVV G TN L + + FLQNS+G V P D WL
Sbjct: 179 LQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWL 238
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
V RG+KTL R++ H + ++A+FLE+ V V +PGL SHP HE+AK Q S GM+
Sbjct: 239 VQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMI 298
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
SF + + F+E+L F AESLGG+ESL ++PA MTH SIPKE R+ +GI D L+
Sbjct: 299 SFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLI 357
Query: 368 RLSVGVEGYTDLIADLDQALRK 389
RLSVGVE DL+ D+ +AL K
Sbjct: 358 RLSVGVEAIEDLLTDIKEALEK 379
|
The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| 119113241 | 395 | AGAP011172-PA [Anopheles gambiae str. PE | 0.984 | 0.979 | 0.595 | 1e-139 | |
| 157104405 | 403 | cystathionine beta-lyase [Aedes aegypti] | 0.984 | 0.960 | 0.590 | 1e-136 | |
| 170033744 | 405 | cystathionine beta-lyase [Culex quinquef | 0.982 | 0.953 | 0.581 | 1e-135 | |
| 322799180 | 439 | hypothetical protein SINV_00662 [Solenop | 0.972 | 0.870 | 0.559 | 1e-133 | |
| 289740621 | 394 | cystathionine beta-lyase [Glossina morsi | 0.992 | 0.989 | 0.585 | 1e-133 | |
| 405964445 | 425 | Cystathionine gamma-lyase [Crassostrea g | 0.977 | 0.903 | 0.582 | 1e-133 | |
| 321452138 | 394 | hypothetical protein DAPPUDRAFT_306997 [ | 0.987 | 0.984 | 0.570 | 1e-132 | |
| 340722222 | 385 | PREDICTED: cystathionine gamma-lyase-lik | 0.969 | 0.989 | 0.593 | 1e-132 | |
| 260811616 | 408 | hypothetical protein BRAFLDRAFT_119287 [ | 0.982 | 0.946 | 0.590 | 1e-132 | |
| 296208247 | 405 | PREDICTED: cystathionine gamma-lyase-lik | 0.984 | 0.955 | 0.579 | 1e-131 |
| >gi|119113241|ref|XP_309478.3| AGAP011172-PA [Anopheles gambiae str. PEST] gi|116131695|gb|EAA05138.3| AGAP011172-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/388 (59%), Positives = 298/388 (76%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FL Q F+TKA+H+G +P+QW S V+PPI +STTFKQ+ PGQ GFEY RS NPTR
Sbjct: 9 FLSQPKGFSTKAIHVGQDPEQWNSMAVVPPISMSTTFKQHGPGQHA-GFEYGRSGNPTRD 67
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LERC+ASL+ + GL +SSGLGA T + +L GDHI++GDD+YGGT R VA K+G
Sbjct: 68 VLERCLASLDNGRFGLTFSSGLGATTTIITMLQNGDHIVAGDDLYGGTNRLLRNVALKMG 127
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDFVDL ++ + + IKPNT++ W+E PTNPL+ V D++A+S + +HP I++V+DNT
Sbjct: 128 IEVDFVDLTNMQLVEQAIKPNTRLFWMETPTNPLLKVVDIRAVSEIAHKHPGIVVVVDNT 187
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FL++Y Q+ L G D+V+YSLTKYMNGHSDV+MGA VTND+++ RLKFLQN+ G+VPSP
Sbjct: 188 FLSSYLQRPLDLGADVVMYSLTKYMNGHSDVIMGAMVTNDEAVYERLKFLQNAAGIVPSP 247
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+LV R LKTL R++ H+ S+ +A+FLE+HP V+ VLHPGLPSHP HELAK Q G
Sbjct: 248 FDCYLVNRSLKTLALRMERHKSNSLAIARFLETHPKVERVLHPGLPSHPQHELAKRQTYG 307
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SG++SFY+ GG EE+ FL++L +F AESLGG ESLA+LP+ MTH S+P + R LGI
Sbjct: 308 HSGIMSFYIRGGLEESSNFLKALHVFTLAESLGGYESLAELPSVMTHASVPLQQRQELGI 367
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
TD LVRLSVG+E DLIADL QAL KA
Sbjct: 368 TDGLVRLSVGLEDVDDLIADLQQALDKA 395
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157104405|ref|XP_001648394.1| cystathionine beta-lyase [Aedes aegypti] gi|108880378|gb|EAT44603.1| AAEL004059-PB [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/388 (59%), Positives = 292/388 (75%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
F Q FATKA+H+G + +QW+S+ V+PPI +STTFKQ P Q G+EY RS NPTR
Sbjct: 17 FRAQPKGFATKAIHVGQDAEQWKSRAVVPPISMSTTFKQFGPAQHA-GYEYGRSGNPTRD 75
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LERC+ASL+ K+GL +SSGLG T V +LSAGDHI++GDD+YGGT R +VA K+
Sbjct: 76 VLERCLASLDNGKYGLTFSSGLGVTTTVITMLSAGDHIVAGDDLYGGTNRLLRKVAMKMN 135
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDFVD + + +KPNTK+ WIE PTNPL+ V D++A+S V + P +++V+DNT
Sbjct: 136 IEVDFVDCTDLAKVEAAVKPNTKLFWIETPTNPLLKVIDIEAVSEVAHKFPGVVVVVDNT 195
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FL+AY Q+ L G DIV+YSLTKYMNGHSDV+MGA + ND++L +LKFLQN+ G+VPSP
Sbjct: 196 FLSAYLQRPLDLGADIVMYSLTKYMNGHSDVIMGAAIMNDEALYEQLKFLQNAAGIVPSP 255
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+LV R LKTL R++ H+ S+ +AKFLE HP V+ VLHPGLPSHP HELAK Q G
Sbjct: 256 FDCYLVNRSLKTLALRMERHKSNSLAIAKFLEKHPKVERVLHPGLPSHPQHELAKKQTYG 315
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SG++SFY+ GG EE+ FL+SL +F AESLGG ESLA++P+ MTH S+P E R LGI
Sbjct: 316 HSGIMSFYIKGGMEESTKFLQSLEVFTLAESLGGYESLAEVPSVMTHASVPPEHRALLGI 375
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
TDNL+R+SVG+E DLI DL QAL KA
Sbjct: 376 TDNLIRISVGLEDADDLIVDLKQALEKA 403
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170033744|ref|XP_001844736.1| cystathionine beta-lyase [Culex quinquefasciatus] gi|167874813|gb|EDS38196.1| cystathionine beta-lyase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/387 (58%), Positives = 288/387 (74%), Gaps = 1/387 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
F Q FATKA+H+ +P+QW+S V+PPI +STTFKQ+ P Q GFEY RS NPTR
Sbjct: 19 FRAQPKGFATKAIHVAQDPEQWKSMAVVPPISMSTTFKQHGPAQHA-GFEYGRSGNPTRD 77
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LERC+ASL+ K+GL +SSGLG T + +LSAGDH+++GDD+YGGT R QVA K+
Sbjct: 78 VLERCLASLDNGKYGLTFSSGLGVTTTIITMLSAGDHVVAGDDLYGGTNRLLRQVAMKMN 137
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ VDFVD + + IKPNTK+ W+E PTNPL+ V D++A+ + + P +++V+DNT
Sbjct: 138 IAVDFVDTTDLAKVEAAIKPNTKLFWLETPTNPLLKVADIEAVCKIAHKFPGVMVVVDNT 197
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FL+AY Q+ L G D+V+YSLTKYMNGHSDV+MGA V ND++L RLKFLQN+ G+VPSP
Sbjct: 198 FLSAYLQRPLDLGADVVMYSLTKYMNGHSDVIMGAAVMNDEALYERLKFLQNAAGIVPSP 257
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+LV R LKTL R++ H+ S+ VAKFLE+H V+ VLHPGLPSHP HELAK Q G
Sbjct: 258 FDCYLVNRSLKTLALRMERHKSNSLAVAKFLEAHSKVERVLHPGLPSHPQHELAKKQTYG 317
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SG++SFY+ GG +E+ FL++L +F AESLGG ESLA+LP+ MTH S+P E R LGI
Sbjct: 318 HSGIMSFYIKGGLDESSAFLKALQVFTLAESLGGYESLAELPSVMTHASVPAEQRAQLGI 377
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRK 389
TD LVR+SVG+E DLI DL QAL K
Sbjct: 378 TDGLVRISVGLEDVDDLIVDLKQALEK 404
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322799180|gb|EFZ20610.1| hypothetical protein SINV_00662 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/386 (55%), Positives = 294/386 (76%), Gaps = 4/386 (1%)
Query: 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLER 66
+ FAT A+H G +P QW + ++PP+++STTF+Q+ P Q GFEY RS NP+R LE
Sbjct: 58 EKGFATTAIHAGQDPHQWTHRALVPPLVMSTTFQQDAPAQH-SGFEYGRSGNPSRNVLES 116
Query: 67 CIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126
C+A+L++ K+G+C++SGLGA + + L+ AGDH+ISGDD+YGGT RY +V + G++
Sbjct: 117 CLAALDKGKYGVCFASGLGATSVIMSLMEAGDHLISGDDLYGGTNRYIQKVLSRQGVKYT 176
Query: 127 FVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA 186
FVD+ ++N+I I+PNTKMVW+E PTNPL+ + D++A++ +K PDI+LV+DNTFLT
Sbjct: 177 FVDMTNVQNVIDAIQPNTKMVWLETPTNPLLKIVDIQAVADTLKSRPDIILVVDNTFLTC 236
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
Y+QK L G DIV+YSLTKYMNGHSDV+MGA +T D L RL+FLQN+ G+VPSPFDC
Sbjct: 237 YFQKPLDLGADIVMYSLTKYMNGHSDVIMGAAITRRDDLAERLRFLQNATGIVPSPFDCT 296
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306
+V RGLKTL R+++H + S+ VAKFLESHPCV+ V HP LPSH H+LA +Q SG SG+
Sbjct: 297 MVNRGLKTLELRMQQHMKNSLAVAKFLESHPCVEKVFHPYLPSHKQHKLAINQSSGHSGI 356
Query: 307 LSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366
SFY+ G ++R FL++L +F AESLGG ESLA+LP+ MTH S+P++ R+ LGI D L
Sbjct: 357 FSFYLKG---DSRRFLKALKVFTLAESLGGYESLAELPSVMTHASVPEDMREQLGINDQL 413
Query: 367 VRLSVGVEGYTDLIADLDQALRKACK 392
+RLSVG+E DLIAD+ QAL +AC+
Sbjct: 414 IRLSVGLETEQDLIADVKQALEQACQ 439
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289740621|gb|ADD19058.1| cystathionine beta-lyase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/391 (58%), Positives = 292/391 (74%), Gaps = 1/391 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
F Q FATKA+H+G EP+QW+S CV+P I LSTTFKQ+ PG+ +GFEYSRS NPTR
Sbjct: 5 FKEQPRGFATKAIHVGQEPEQWKSLCVVPQISLSTTFKQDGPGEH-RGFEYSRSGNPTRN 63
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+C+ASL+ AK+GL ++SGLGA T V +LS+GDHI+ GDDVYGGT R QV ++G
Sbjct: 64 VLEKCLASLDNAKYGLTFASGLGATTTVLTMLSSGDHIVVGDDVYGGTNRLIRQVGTRLG 123
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
++V F D + IKPNTK+VW+E PTNPL V D+ A+SA+V + +I+L +DNT
Sbjct: 124 IDVTFADPCNLGEFGSAIKPNTKLVWVETPTNPLTKVADINALSAIVHRKGNIILAIDNT 183
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FLT+Y+Q+ L G D+V YSLTKYMNGHSDVVMGA N D+L RLKFLQN++G+VPSP
Sbjct: 184 FLTSYFQRPLELGADLVCYSLTKYMNGHSDVVMGAVTMNSDNLYDRLKFLQNAVGIVPSP 243
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+ V R LKTL R+++H++ +I VAKFLESH V+ VLHPGLPSHP+H+LA Q G
Sbjct: 244 FDCYQVNRSLKTLALRMEQHQKNAIAVAKFLESHDFVEKVLHPGLPSHPHHQLALKQTYG 303
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SG+ SFY+ GG + FL+++ +F AESLGG ESLA+LPA MTH S+P E R L I
Sbjct: 304 YSGVFSFYLKGGLNHAKAFLKAVHVFTLAESLGGYESLAELPAVMTHASVPAEDRKKLAI 363
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKACKV 393
TD+L+RLSVG+E DLIADL+QAL A +
Sbjct: 364 TDSLIRLSVGLEDIEDLIADLEQALHVAKNI 394
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405964445|gb|EKC29931.1| Cystathionine gamma-lyase [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/386 (58%), Positives = 290/386 (75%), Gaps = 2/386 (0%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
F T A H G +P++W S+ V+PPI +STTFKQ PG+ GFEYSRS NPTR LE CI
Sbjct: 9 GFGTLATHEGQDPEKWTSRAVVPPISMSTTFKQKAPGEH-YGFEYSRSGNPTRNCLEECI 67
Query: 69 ASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
A+LE KH L ++SGL TAVT+LL +GDHI+S DD+YGGT R+F QVA ++G+E FV
Sbjct: 68 AALEGGKHALVFASGLATTTAVTYLLKSGDHIVSMDDLYGGTNRFFKQVATRMGVETSFV 127
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAY 187
D I+N+ K +KPNTK+VW+E PTNP + + D+ V+KQ + DI++V+DNTF+++Y
Sbjct: 128 DCTVIDNVKKAMKPNTKLVWLETPTNPTLRIVDIAEAVKVIKQKNKDIIVVVDNTFMSSY 187
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
+Q+ L +G D+V++SLTKYMNGHSDVVMGA DD L RL+FLQN+ G VPSPFD +L
Sbjct: 188 FQRPLDFGADMVMHSLTKYMNGHSDVVMGAVALKDDGLCERLRFLQNAFGAVPSPFDSFL 247
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
V RGLKTL R+KEH + + VAKFLESHPCV+ V+HPGLPSHP HELAK Q G SGM+
Sbjct: 248 VNRGLKTLHVRMKEHMKNGLAVAKFLESHPCVEKVIHPGLPSHPQHELAKKQMRGFSGMV 307
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
+FY+ GG +E FL+++ +F AESLGG ESL +LP+ MTH S+P RD LGI+DNL+
Sbjct: 308 TFYIKGGLKEASEFLKNVKVFTLAESLGGFESLCELPSVMTHASVPANERDKLGISDNLI 367
Query: 368 RLSVGVEGYTDLIADLDQALRKACKV 393
RLSVG+E DL+ DLDQAL+ A +V
Sbjct: 368 RLSVGIEEEEDLLQDLDQALKAAFEV 393
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|321452138|gb|EFX63600.1| hypothetical protein DAPPUDRAFT_306997 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/389 (57%), Positives = 291/389 (74%), Gaps = 1/389 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
F QD FAT+A+H +P+QW + V+ PI L+TTFKQ+ P + + +EY RS NPTR
Sbjct: 6 FKEQDPTFATRAIHDAQDPEQWDAMPVVLPISLATTFKQDAPAEF-RSYEYGRSGNPTRT 64
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
E+ +ASLE AKHGL ++SGL A T + HLLSAGDHI+S DD+YGGT RY +VA ++
Sbjct: 65 TFEKVLASLEGAKHGLTFASGLAASTTIVHLLSAGDHIVSMDDLYGGTNRYLRKVADRMN 124
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
++ FVD EN+ K I+ NTK+VW+E PTNP + + D+ A++ +V + +ILLV+DNT
Sbjct: 125 IKTTFVDATNPENVEKAIQENTKLVWVETPTNPTLKLVDIAAVAEIVHKRENILLVVDNT 184
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FL++Y+Q+ L G DIV++SLTKYMNGHSDV+MGA +TNDD + RL+FLQN++G VPSP
Sbjct: 185 FLSSYFQRPLELGADIVMHSLTKYMNGHSDVIMGAAMTNDDDVHTRLRFLQNAIGPVPSP 244
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+LV R LKTL R++EH + + VA++LE+HPCV+ V+HPGLPSHP HELAK Q G
Sbjct: 245 FDCFLVNRSLKTLHLRMREHMKNGLAVARYLENHPCVERVIHPGLPSHPQHELAKRQCYG 304
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SGM++ Y+ GG E+R F ++L +F AESLGG ESLA+LPA MTH S+ E R LGI
Sbjct: 305 HSGMITIYIKGGLSESRAFFKALKVFTLAESLGGYESLAELPALMTHASVCAEERAILGI 364
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKAC 391
TDNL+RLSVG+E DLIADLDQALR A
Sbjct: 365 TDNLIRLSVGLEDVGDLIADLDQALRAAV 393
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722222|ref|XP_003399507.1| PREDICTED: cystathionine gamma-lyase-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/386 (59%), Positives = 292/386 (75%), Gaps = 5/386 (1%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
+ +T FATKA+H G +P QW V+PPII+STTF+Q+ PG+ +G+EY RSNNPTR
Sbjct: 1 MSTETGFATKAIHAGQDPLQWNHWEVVPPIIMSTTFRQDGPGKT-KGYEYGRSNNPTRNV 59
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
L+ C+A+LE K+ L ++SGLGA T VT LL+AGDHIIS DD+YGGT R+F + +
Sbjct: 60 LQTCLAALENGKYALTFASGLGATTVVTSLLNAGDHIISTDDIYGGTNRFFQKCLCRQNN 119
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNT 182
V FVD+ I N+I IKPNTKMVW+E PTNPL+ + D++A+ VKQ + +I++V+DNT
Sbjct: 120 TVTFVDMLDINNVITNIKPNTKMVWLETPTNPLLKLVDIQAVVQAVKQKNAEIIVVVDNT 179
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FLT Y+QK L +G DIV+YSLTKYMNGHSDV+MGAT+TN D L RL FLQN+MGVVPSP
Sbjct: 180 FLTCYFQKPLNFGADIVIYSLTKYMNGHSDVIMGATITNRDDLAQRLAFLQNAMGVVPSP 239
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC LV R LKTL R+++H + + VA+FLESHPCV+ V+HP LPSHP HELA Q SG
Sbjct: 240 VDCSLVNRSLKTLEIRMQQHMKNGLAVAQFLESHPCVEKVIHPYLPSHPQHELALKQTSG 299
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SGM+SFY+ G A + FL++L +F AESLGG ESLA+LP MTH S+P+E R LGI
Sbjct: 300 HSGMVSFYLKGDASK---FLKALKVFTLAESLGGYESLAELPCVMTHASVPEEARATLGI 356
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALR 388
TD L+RLS+G+E DL+ADLDQAL+
Sbjct: 357 TDKLIRLSIGLETELDLLADLDQALK 382
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260811616|ref|XP_002600518.1| hypothetical protein BRAFLDRAFT_119287 [Branchiostoma floridae] gi|229285805|gb|EEN56530.1| hypothetical protein BRAFLDRAFT_119287 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/388 (59%), Positives = 282/388 (72%), Gaps = 2/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP F T A+H G +P+QW S+ VIPPI L+TTFKQ PGQ GFEYSR+ NPTR
Sbjct: 16 FLPAFPHFGTDAIHAGQDPEQWNSKAVIPPISLATTFKQKAPGQH-SGFEYSRAGNPTRN 74
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE C A+LE KHGL +SSGL A +T LL AGDHI+S DDVYGGT RYF VA + G
Sbjct: 75 CLEECFAALENGKHGLTFSSGLAATDTITKLLQAGDHIVSMDDVYGGTNRYFRNVASRNG 134
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+E FVD N+ +KPNTKMVWIE PTNP + V D++A++ V+K DI LV DNT
Sbjct: 135 IETSFVDCTDAANVAAALKPNTKMVWIETPTNPTLRVVDIQAVADVIKGR-DIFLVSDNT 193
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +S+TKYMNGHSDVVMGA VT D L RL+FLQ ++G VPSP
Sbjct: 194 FMSAYFQRPLDHGADIAFHSVTKYMNGHSDVVMGAVVTKRDDLHERLRFLQYAVGAVPSP 253
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
FDC+LV RGLKTL R+K+H + + VAKFLE+HPCV +PGLPSHP++E+ + Q +G
Sbjct: 254 FDCFLVNRGLKTLAVRMKQHYQNGLAVAKFLENHPCVIKCSYPGLPSHPSYEVMQKQSTG 313
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
SGM++F + GG E FL+ L IF AESLGGIESLA++P MTH S+PK+ RD LGI
Sbjct: 314 CSGMVTFRIKGGVESASKFLQYLKIFTLAESLGGIESLAEIPGLMTHLSVPKKDRDTLGI 373
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
D+LVRLS G+E +DLIADLDQ L+KA
Sbjct: 374 HDDLVRLSCGIEETSDLIADLDQGLKKA 401
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|296208247|ref|XP_002751000.1| PREDICTED: cystathionine gamma-lyase-like isoform 1 [Callithrix jacchus] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/388 (57%), Positives = 290/388 (74%), Gaps = 1/388 (0%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPHFQHFATQAIHVGQEPEQWTSRAVVPPISLSTTFKQEAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LER +A+L+ AK+ L ++SGL A +THLL AGDHII DDVYGG+ RYF QVA + G
Sbjct: 70 CLERAVAALDGAKYCLAFASGLAATVTITHLLKAGDHIICMDDVYGGSNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP++ + D++A + +V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPILKMTDIEACAHIVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI + S TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSPYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNSESLHNRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLHIRMEKHFKNGMAVAQFLESNPRVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+PK+ RD LGI
Sbjct: 310 CTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGYESLAELPAIMTHSSVPKKDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDEKDLLEDLDQALKAA 397
|
Source: Callithrix jacchus Species: Callithrix jacchus Genus: Callithrix Family: Cebidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 393 | ||||||
| UNIPROTKB|Q19QT7 | 405 | CTH "Cystathionine gamma-lyase | 0.984 | 0.955 | 0.577 | 6.7e-120 | |
| UNIPROTKB|B0JYP8 | 417 | CTH "CTH protein" [Bos taurus | 0.984 | 0.928 | 0.577 | 8.5e-120 | |
| UNIPROTKB|E1BNH2 | 405 | CTH "Cystathionine gamma-lyase | 0.984 | 0.955 | 0.577 | 8.5e-120 | |
| UNIPROTKB|Q58DW2 | 405 | CTH "Cystathionine gamma-lyase | 0.984 | 0.955 | 0.574 | 3.7e-119 | |
| UNIPROTKB|P32929 | 405 | CTH "Cystathionine gamma-lyase | 0.984 | 0.955 | 0.572 | 2e-118 | |
| UNIPROTKB|E2RDY8 | 405 | CTH "Uncharacterized protein" | 0.984 | 0.955 | 0.577 | 2.6e-118 | |
| FB|FBgn0000566 | 393 | Eip55E "Eip55E" [Drosophila me | 0.994 | 0.994 | 0.569 | 4.2e-118 | |
| UNIPROTKB|E1BYF1 | 399 | CTH "Uncharacterized protein" | 0.966 | 0.952 | 0.572 | 1.1e-117 | |
| UNIPROTKB|Q60HG7 | 405 | CTH "Cystathionine gamma-lyase | 0.984 | 0.955 | 0.567 | 7.9e-117 | |
| RGD|2443 | 398 | Cth "cystathionase (cystathion | 0.982 | 0.969 | 0.565 | 1.3e-116 |
| UNIPROTKB|Q19QT7 CTH "Cystathionine gamma-lyase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 224/388 (57%), Positives = 283/388 (72%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H G EP+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPT
Sbjct: 11 FLPRFQHFATQAIHAGQEPEQWASKAVVPPISLSTTFKQEAPGQH-SGFEYSRSGNPTXN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A L+ AK+ L ++SGL A +THLL AG IIS DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAVLDGAKYSLAFASGLAATVTITHLLKAGXQIISMDDVYGGTNRYFRQVAAEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP++ + D++A + +V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKSKLLEAAITPETKLVWIETPTNPILKMIDIEACAQIVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNGHSDVVMG N ++L +RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLALGADICMYSATKYMNGHSDVVMGLVSLNSETLHSRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLESHP V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM+SFY+ G FL+SL +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 RDTLIRLSVGLEDKQDLMDDLDQALKAA 397
|
|
| UNIPROTKB|B0JYP8 CTH "CTH protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 224/388 (57%), Positives = 285/388 (73%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H+G EP+QW SQ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYSLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVATEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D++A + V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKPKLLEAAITPETKLVWIETPTNPSLKMIDIEACAHTVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLSLGADICMYSATKYMNGHSDVVMGLVSLNSESLHDRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM++FY+ G + FL++L +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDKQDLLDDLDQALKAA 397
|
|
| UNIPROTKB|E1BNH2 CTH "Cystathionine gamma-lyase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 224/388 (57%), Positives = 285/388 (73%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H+G EP+QW SQ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYSLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVATEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D++A + V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKPKLLEAAITPETKLVWIETPTNPSLKMIDIEACAHTVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLSLGADICMYSATKYMNGHSDVVMGLVSLNSESLHDRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM++FY+ G + FL++L +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDKQDLLDDLDQALKAA 397
|
|
| UNIPROTKB|Q58DW2 CTH "Cystathionine gamma-lyase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
Identities = 223/388 (57%), Positives = 285/388 (73%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP+ FAT+A+H+G EP+QW SQ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPRFQHFATQAIHVGQEPEQWTSQAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYSLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVATEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D++A + V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKPKLLEAAITPETKLVWIETPTNPSLKMIDIEACAHTVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNG+SDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLSLGADICMYSATKYMNGYSDVVMGLVSLNSESLHDRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 IDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM++FY+ G + FL++L +F AESLGG ESLA+LPA MTH S+PK R+ LGI
Sbjct: 310 CPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDKQDLLDDLDQALKAA 397
|
|
| UNIPROTKB|P32929 CTH "Cystathionine gamma-lyase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 222/388 (57%), Positives = 284/388 (73%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DNT
Sbjct: 130 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +G
Sbjct: 250 IDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LGI
Sbjct: 310 CTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDEEDLLEDLDQALKAA 397
|
|
| UNIPROTKB|E2RDY8 CTH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 224/388 (57%), Positives = 282/388 (72%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
F P+ FAT+A+H+G EP+QW SQ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FQPRFPHFATQAIHVGQEPEQWSSQAVVPPISLSTTFKQGAPGQHA-GFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYSLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP + + D++A + V + DI+LV+DNT
Sbjct: 130 LKITFVDCSKIKLLEAAITPETKLVWIETPTNPSLKMIDIEACAHTVHKRGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++AY+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPSP
Sbjct: 190 FMSAYFQRPLALGADICMYSATKYMNGHSDVVMGLVSVNSESLHNRLRFLQNSIGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 VDCYLCNRGLKTLHVRMEKHFENGMAVAQFLESNPRVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
GM++FY+ G FL+ L +F AESLGG ESLA+LPA MTH S+PK RD LGI
Sbjct: 310 CPGMITFYIKGTLVHAEAFLKHLKLFTLAESLGGYESLAELPAIMTHASVPKSDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDKKDLLEDLDQALKAA 397
|
|
| FB|FBgn0000566 Eip55E "Eip55E" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 224/393 (56%), Positives = 290/393 (73%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPT 60
MS+ Q + FATK++H G PDQW+S VIPPI LSTTFKQ+ PG+ +G+EYSRS NPT
Sbjct: 1 MSYRVQPSGFATKSIHSGQSPDQWKSAAVIPPISLSTTFKQDAPGEH-RGYEYSRSGNPT 59
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
R LE C A+L+ AK+GL +SSGLGA TAV +LS+GDHII GDDVYGGT R QVA +
Sbjct: 60 RNVLETCFAALDNAKYGLTFSSGLGATTAVLTMLSSGDHIIMGDDVYGGTNRLIRQVATR 119
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVL 179
+G+ FVD K++ + IKP TK+VWIE+PTNPL+ V D++AI+ +V DI+L +
Sbjct: 120 LGISATFVDPTKLDLIKSSIKPETKLVWIESPTNPLVKVADIEAIAQLVHGVREDIVLAV 179
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNTFLT+Y+Q+ L G D+V YSLTKYMNGH+DVVMG N + L LKFLQN++ +V
Sbjct: 180 DNTFLTSYFQRPLELGADLVCYSLTKYMNGHTDVVMGGITMNSEKLYKSLKFLQNAVDIV 239
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
PSPFDC+ V R LKTL R+++H++ +++VAK+LE++P V+ VLHP LPSHP H++A Q
Sbjct: 240 PSPFDCYQVNRSLKTLSLRMEQHQKNALKVAKYLETNPFVEKVLHPSLPSHPQHKIALKQ 299
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
G SG+ SFY+ G + + FL++L +F AESLGG ESLA+LP+ MTH S+P E R
Sbjct: 300 AYGYSGVFSFYIKGELKHSSAFLKALKVFTLAESLGGYESLAELPSIMTHASVPAEDRKT 359
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
LGITD LVRLSVG+E DLI DL+QAL A K
Sbjct: 360 LGITDGLVRLSVGLEDADDLIKDLEQALEIASK 392
|
|
| UNIPROTKB|E1BYF1 CTH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 218/381 (57%), Positives = 280/381 (73%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
F T+A+H G EP+QWRS ++PP+ LSTTFKQ PG+ G++YSR NPTR LE+ +A
Sbjct: 12 FGTQAIHAGQEPEQWRSGALVPPVSLSTTFKQQAPGEHA-GYDYSRCGNPTRTCLEKAVA 70
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
L+ AK+ L Y+SGL A +THLL AGD II DDVYGGT RYF Q+A K+GL++ FVD
Sbjct: 71 VLDGAKYCLAYASGLAATVNITHLLKAGDTIICMDDVYGGTNRYFQQIAKKMGLKIIFVD 130
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
K++ L I P TK+VWIE PTNP + V D++ + V+ +H DILL +DN+F++AY+Q
Sbjct: 131 CTKLKCLEAAITPETKLVWIETPTNPTLKVIDIQGCADVIHKHKDILLAVDNSFMSAYFQ 190
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
+ L G DI +YS TKYMNGHSDVVMG N D + RLKFLQ S+G +PSPFDC+L
Sbjct: 191 RPLSLGADICMYSATKYMNGHSDVVMGLVSVNRDDVYERLKFLQGSLGAIPSPFDCYLCN 250
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGLKTL R+ +H R ++ V +FLES+P V+ V++PGLPSHP HELAK Q +G GMLSF
Sbjct: 251 RGLKTLQLRMNQHFRNALAVGRFLESNPRVEKVIYPGLPSHPQHELAKRQCTGCPGMLSF 310
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
Y+ G + IFL+S+ +F AESLGG ESLA+LPA MTH S+PKE R+ALGI+D L+RL
Sbjct: 311 YIKGNLKHATIFLKSIKVFTLAESLGGYESLAELPAVMTHASVPKEEREALGISDTLIRL 370
Query: 370 SVGVEGYTDLIADLDQALRKA 390
SVG+E DL+ DLDQAL+ A
Sbjct: 371 SVGLEDEEDLLEDLDQALKAA 391
|
|
| UNIPROTKB|Q60HG7 CTH "Cystathionine gamma-lyase" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 220/388 (56%), Positives = 284/388 (73%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+P I LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 FLPHFQHFATQAIHVGQEPEQWTSRAVVPLISLSTTFKQAAPGQH-SGFEYSRSGNPTRN 69
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA + G
Sbjct: 70 CLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG 129
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD KI+ L I P TK+VWIE PTNP++ + D++A + +V + DI+LV+DNT
Sbjct: 130 LKISFVDCSKIKLLEAAITPETKLVWIETPTNPVLKMIDIEACAHIVHKRGDIILVVDNT 189
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
F++ Y+Q+ L G DI + S TKYMNGHSDVVMG N + L RL+FLQNS+G VPSP
Sbjct: 190 FMSPYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVNCERLHNRLRFLQNSLGAVPSP 249
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HELAK Q +G
Sbjct: 250 LDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPGVEKVIYPGLPSHPQHELAKRQCTG 309
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+GM++FY+ G + IFL++L +F AESLGG ESL +LPA MTH S+PK RD LGI
Sbjct: 310 CTGMITFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLVELPAIMTHASVPKNDRDVLGI 369
Query: 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390
+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 SDTLIRLSVGLEDEKDLLEDLDQALKAA 397
|
|
| RGD|2443 Cth "cystathionase (cystathionine gamma-lyase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 220/389 (56%), Positives = 290/389 (74%)
Query: 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRR 62
FLP FAT+A+H+G EP+QW S+ V+ PI L+TTFKQ++PGQ GF YSRS NPTR
Sbjct: 10 FLPSFQHFATQAIHVGPEPEQWSSRAVVLPISLATTFKQDSPGQS-SGFVYSRSGNPTRN 68
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE+ +A+L+ AKH L ++ GL A T +THLL AGD +I D+VYGGT RYF +VA + G
Sbjct: 69 CLEKAVAALDGAKHCLTFARGLAATTTITHLLKAGDEVICMDEVYGGTNRYFRRVASEFG 128
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
L++ FVD K + L I P TK+VWIE PTNP + + D+KA + +V +H DI+LV+DNT
Sbjct: 129 LKISFVDCSKTKLLEAAITPQTKLVWIETPTNPTLKLADIKACAQIVHKHKDIILVVDNT 188
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMG-ATVTNDDSLQARLKFLQNSMGVVPS 241
F++AY+Q+ L G DI + S TKYMNGHSDVVMG +VT+DD L RL+FLQNS+G VPS
Sbjct: 189 FMSAYFQRPLALGADICMCSATKYMNGHSDVVMGLVSVTSDD-LNERLRFLQNSLGAVPS 247
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
PFDC+L RGLKTL R+++H R + VA+FLES+P V+ V++PGLPSHP HELAK Q +
Sbjct: 248 PFDCYLCCRGLKTLQIRMEKHFRNGMAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCT 307
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
G GM+SFY+ G + ++FL+++ +F AESLGG ESLA+LPA MTH S+P++ R LG
Sbjct: 308 GCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLG 367
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRKA 390
I+D L+RLSVG+E DL+ DL QAL+ A
Sbjct: 368 ISDTLIRLSVGLEDEKDLLEDLGQALKAA 396
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P32929 | CGL_HUMAN | 4, ., 4, ., 1, ., 1 | 0.5721 | 0.9847 | 0.9555 | yes | N/A |
| Q8VCN5 | CGL_MOUSE | 4, ., 4, ., 1, ., 1 | 0.5618 | 0.9847 | 0.9723 | yes | N/A |
| Q9ZMW7 | METB_HELPJ | 2, ., 5, ., 1, ., 4, 8 | 0.4761 | 0.9516 | 0.9842 | yes | N/A |
| Q1M0P5 | METB_HELPX | 2, ., 5, ., 1, ., 4, 8 | 0.4867 | 0.9516 | 0.9842 | yes | N/A |
| Q58DW2 | CGL_BOVIN | 4, ., 4, ., 1, ., 1 | 0.5756 | 0.9389 | 0.9111 | yes | N/A |
| O05394 | MCCB_BACSU | 4, ., 4, ., 1, ., 2 | 0.4694 | 0.9491 | 0.9841 | yes | N/A |
| Q07703 | METC_BORAV | 4, ., 4, ., 1, ., 8 | 0.3401 | 0.9338 | 0.9267 | yes | N/A |
| P53780 | METC_ARATH | 4, ., 4, ., 1, ., 8 | 0.3886 | 0.9643 | 0.8168 | yes | N/A |
| P46807 | METB_MYCLE | 2, ., 5, ., 1, ., 4, 8 | 0.4461 | 0.9541 | 0.9664 | yes | N/A |
| Q55DV9 | CGL_DICDI | 4, ., 4, ., 1, ., 1 | 0.5142 | 0.9745 | 0.9896 | yes | N/A |
| Q60HG7 | CGL_MACFA | 4, ., 4, ., 1, ., 1 | 0.5670 | 0.9847 | 0.9555 | N/A | N/A |
| Q19QT7 | CGL_PIG | 4, ., 4, ., 1, ., 1 | 0.5773 | 0.9847 | 0.9555 | yes | N/A |
| P18757 | CGL_RAT | 4, ., 4, ., 1, ., 1 | 0.5592 | 0.9847 | 0.9723 | yes | N/A |
| P31373 | CYS3_YEAST | 4, ., 4, ., 1, ., 1 | 0.4860 | 0.9770 | 0.9746 | yes | N/A |
| P56069 | METB_HELPY | 2, ., 5, ., 1, ., 4, 8 | 0.4894 | 0.9516 | 0.9842 | yes | N/A |
| P66876 | METB_MYCBO | 2, ., 5, ., 1, ., 4, 8 | 0.4391 | 0.9465 | 0.9587 | yes | N/A |
| P66875 | METB_MYCTU | 2, ., 5, ., 1, ., 4, 8 | 0.4391 | 0.9465 | 0.9587 | yes | N/A |
| P55216 | CGL2_CAEEL | 4, ., 4, ., 1, ., 1 | 0.5509 | 0.9669 | 0.9693 | yes | N/A |
| Q83A83 | METC_COXBU | 4, ., 4, ., 1, ., 8 | 0.4550 | 0.9491 | 0.9638 | yes | N/A |
| O94350 | CBL_SCHPO | 4, ., 4, ., 1, ., 8 | 0.3629 | 0.9618 | 0.9692 | yes | N/A |
| P44502 | METB_HAEIN | 2, ., 5, ., 1, ., 4, 8 | 0.3896 | 0.9262 | 0.9864 | yes | N/A |
| P0A4K2 | METC_LACLA | 4, ., 4, ., 1, ., 8 | 0.4921 | 0.9618 | 0.9947 | yes | N/A |
| A2RM21 | METC_LACLM | 4, ., 4, ., 1, ., 8 | 0.4921 | 0.9618 | 0.9947 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 393 | |||
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 0.0 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 1e-177 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 1e-173 | |
| PRK07811 | 388 | PRK07811, PRK07811, cystathionine gamma-synthase; | 1e-158 | |
| PRK07671 | 377 | PRK07671, PRK07671, cystathionine beta-lyase; Prov | 1e-154 | |
| PRK06176 | 380 | PRK06176, PRK06176, cystathionine gamma-synthase/c | 1e-142 | |
| PRK08064 | 390 | PRK08064, PRK08064, cystathionine beta-lyase; Prov | 1e-124 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 1e-120 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 1e-116 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 1e-115 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 1e-115 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 1e-112 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 1e-107 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 1e-107 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 1e-107 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 1e-105 | |
| PLN02509 | 464 | PLN02509, PLN02509, cystathionine beta-lyase | 1e-103 | |
| PRK08776 | 405 | PRK08776, PRK08776, cystathionine gamma-synthase; | 1e-101 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 1e-101 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 1e-100 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 4e-98 | |
| PRK07269 | 364 | PRK07269, PRK07269, cystathionine gamma-synthase; | 1e-96 | |
| PRK08249 | 398 | PRK08249, PRK08249, cystathionine gamma-synthase; | 7e-96 | |
| PRK06434 | 384 | PRK06434, PRK06434, cystathionine gamma-lyase; Val | 5e-94 | |
| PRK08133 | 390 | PRK08133, PRK08133, O-succinylhomoserine sulfhydry | 9e-93 | |
| TIGR01325 | 381 | TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul | 3e-88 | |
| PRK06460 | 376 | PRK06460, PRK06460, hypothetical protein; Provisio | 2e-85 | |
| PRK05968 | 389 | PRK05968, PRK05968, hypothetical protein; Provisio | 1e-84 | |
| PRK08248 | 431 | PRK08248, PRK08248, O-acetylhomoserine aminocarbox | 5e-82 | |
| PRK07049 | 427 | PRK07049, PRK07049, methionine gamma-lyase; Valida | 5e-79 | |
| PRK07504 | 398 | PRK07504, PRK07504, O-succinylhomoserine sulfhydry | 9e-78 | |
| PRK07812 | 436 | PRK07812, PRK07812, O-acetylhomoserine aminocarbox | 4e-76 | |
| PRK08134 | 433 | PRK08134, PRK08134, O-acetylhomoserine aminocarbox | 1e-75 | |
| PRK07050 | 394 | PRK07050, PRK07050, cystathionine beta-lyase; Prov | 4e-75 | |
| PRK07810 | 403 | PRK07810, PRK07810, O-succinylhomoserine sulfhydry | 9e-75 | |
| PRK06084 | 425 | PRK06084, PRK06084, O-acetylhomoserine aminocarbox | 8e-73 | |
| TIGR01324 | 377 | TIGR01324, cysta_beta_ly_B, cystathionine beta-lya | 7e-72 | |
| PRK05967 | 395 | PRK05967, PRK05967, cystathionine beta-lyase; Prov | 2e-71 | |
| PRK07582 | 366 | PRK07582, PRK07582, cystathionine gamma-lyase; Val | 6e-71 | |
| PRK05939 | 397 | PRK05939, PRK05939, hypothetical protein; Provisio | 4e-69 | |
| PRK05994 | 427 | PRK05994, PRK05994, O-acetylhomoserine aminocarbox | 4e-68 | |
| PRK05613 | 437 | PRK05613, PRK05613, O-acetylhomoserine aminocarbox | 9e-65 | |
| PRK09028 | 394 | PRK09028, PRK09028, cystathionine beta-lyase; Prov | 6e-60 | |
| PRK08114 | 395 | PRK08114, PRK08114, cystathionine beta-lyase; Prov | 1e-59 | |
| PRK06702 | 432 | PRK06702, PRK06702, O-acetylhomoserine aminocarbox | 1e-54 | |
| PLN02242 | 418 | PLN02242, PLN02242, methionine gamma-lyase | 3e-45 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-09 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-09 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 7e-09 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 1e-07 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 9e-07 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-06 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-06 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 1e-05 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-05 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 2e-04 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 3e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 4e-04 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 4e-04 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 6e-04 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 0.001 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 0.001 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 0.003 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 518 bits (1336), Expect = 0.0
Identities = 203/384 (52%), Positives = 266/384 (69%), Gaps = 10/384 (2%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT-----PGQPPQGFEYSRSNNPTRRNLE 65
AT AVH G PD+ ++ V+ PI L++T+ +T G+ G++YSRS NPTR LE
Sbjct: 1 ATLAVHAGQRPDR-QTGAVVVPIYLTSTYVFDTVEALFAGEHG-GYDYSRSGNPTRDALE 58
Query: 66 RCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124
IA+LE + L +SSG+ A+ A+ LL AGDH+++ DD+YGGTYR F +V P+ G+E
Sbjct: 59 ERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIE 118
Query: 125 VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL 184
V FVD ++ L IKPNTK V++E PTNPL+ V D++AI+ + K+H L+V+DNTF
Sbjct: 119 VTFVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKH-GALVVVDNTFA 177
Query: 185 TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND-DSLQARLKFLQNSMGVVPSPF 243
+ Y Q+ L G DIV++S TKY+ GHSDVV G V N + L RL+FLQN+ G V SPF
Sbjct: 178 SPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPF 237
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D WL+ RGLKTL R++ H+ ++++A+FLE HP V+ V +PGLPSHP HELAK Q SG
Sbjct: 238 DAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMSGF 297
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GMLSF + GG E FL++L +F AESLGG+ESL PA MTH SIP E R+A GIT
Sbjct: 298 GGMLSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAGIT 357
Query: 364 DNLVRLSVGVEGYTDLIADLDQAL 387
D L+RLSVG+E DLIADL QAL
Sbjct: 358 DGLIRLSVGIEDVDDLIADLKQAL 381
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 497 bits (1282), Expect = e-177
Identities = 184/369 (49%), Positives = 249/369 (67%), Gaps = 9/369 (2%)
Query: 28 CVIPPIILSTTFKQNTPGQPPQ-------GFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80
V PPI ++TF +P + G+ YSR NPT LE+ +A+LE + L +
Sbjct: 2 AVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAF 61
Query: 81 SSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKY 139
SSG+ A++ V LL AGDH+++ DD+YGGTYR F ++ PK+G+EV FVD E L
Sbjct: 62 SSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAA 121
Query: 140 IKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIV 199
IKP TK+V++E+PTNP + V D++AI+ + +H LLV+DNTF T Y Q+ L G DIV
Sbjct: 122 IKPETKLVYVESPTNPTLKVVDIEAIAELAHEH-GALLVVDNTFATPYLQRPLELGADIV 180
Query: 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRL 259
++S TKY+ GHSDV+ G V + ++L RL+FL+ ++G + SPFD WL+ RGLKTLP R+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240
Query: 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319
+ H +++VA+FLE HP V+ V +PGLPSHP HELAK Q SG G+ SF + GG E +
Sbjct: 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAK 300
Query: 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379
FL +L +F A SLGG+ESL + PA MTH +P E R A GIT LVRLSVG+E DL
Sbjct: 301 KFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDL 360
Query: 380 IADLDQALR 388
IADL+QAL+
Sbjct: 361 IADLEQALK 369
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-173
Identities = 190/397 (47%), Positives = 253/397 (63%), Gaps = 13/397 (3%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPP-------QGFEYSRS 56
+ T+ VH G PD + V PPI L++TF ++ G+ G++YSR+
Sbjct: 2 SKAKLSLTTRLVHAGRRPDD-LTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRT 60
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFA 115
NPTR LE +A LE + +SSG+ A+ TA+ LL AGDH++ DD+YGGTYR F
Sbjct: 61 GNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFE 120
Query: 116 QVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPD 174
++ K G+EV FVD E L IK PNTK+V++E P+NPL+ V D+ AI+ + K +
Sbjct: 121 KILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAY-G 179
Query: 175 ILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234
L+V+DNTF T Q+ L G DIV++S TKY+ GHSDV+ G +T ++ L L F Q
Sbjct: 180 ALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR 239
Query: 235 S-MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNH 293
+ G V SPFD WL+ RGL+TL R++ H ++++A+FL HP VK V +PGLPSHP H
Sbjct: 240 ANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGH 299
Query: 294 ELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
ELAK Q +G G+ SF + E + FL+SL +F+ AESLGG+ESL PA MTH SIP
Sbjct: 300 ELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIP 358
Query: 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
E R GITD LVRLSVG+E DLIADL+QAL KA
Sbjct: 359 LEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA 395
|
Length = 396 |
| >gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 450 bits (1159), Expect = e-158
Identities = 177/390 (45%), Positives = 239/390 (61%), Gaps = 6/390 (1%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPT 60
MS + FAT+A+H G EPD + V PPI S+TF Q+ G G+EY+R+ NPT
Sbjct: 4 MSDHHANQGFATRAIHAGYEPDP-ATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPT 62
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119
R LE +A+LE +G +SSG+ A + +L GDHI+ +D YGGT+R +V
Sbjct: 63 RTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFT 122
Query: 120 KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179
+ G+E VDL ++ + I P TK++W+E PTNPL+++ D+ A++ + +V+
Sbjct: 123 RWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDA-GAKVVV 181
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNTF + Y Q+ L G D+V++S TKY+ GHSDVV GA VTND+ L FLQN G V
Sbjct: 182 DNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAV 241
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
P PFD +L RGLKTL R+ H + VA+FL HP V VL+PGLPSHP HE+A Q
Sbjct: 242 PGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQ 301
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
G GM+S + GG E R F +F AESLGG+ESL + P+ MTH S
Sbjct: 302 MRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHAST---AGSQ 358
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRK 389
L + D+LVRLSVG+E DL+ADL+QAL +
Sbjct: 359 LEVPDDLVRLSVGIEDVADLLADLEQALGQ 388
|
Length = 388 |
| >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 438 bits (1128), Expect = e-154
Identities = 189/376 (50%), Positives = 243/376 (64%), Gaps = 4/376 (1%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASL 71
TK +H G D + V PI +T+KQ G+ QG+EYSR+ NPTR LE IA L
Sbjct: 5 TKLIHGGIIGDP-STGAVSVPIYQVSTYKQEAVGKH-QGYEYSRTGNPTRAALEELIAVL 62
Query: 72 EEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131
E G + SG+ A+TAV L S+GDH+I DDVYGGTYR +V + G+E FVD
Sbjct: 63 EGGHAGFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS 122
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS 191
+E + + I+PNTK +++E PTNPL+ + D+K IS + K+ +L ++DNTF+T Y+Q
Sbjct: 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK-GLLTIVDNTFMTPYWQSP 181
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
+ G DIVL+S TKY+ GHSDVV G V N L L F+QNS G + P D WL+ RG
Sbjct: 182 ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRG 241
Query: 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311
LKTL R++EHE S +A+FL +HP V V +PGLPSHPNHELAK Q +G GM+SF V
Sbjct: 242 LKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301
Query: 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV 371
G E LE L F AESLG +ESL +P++MTH SIP + R LGITD L+R+SV
Sbjct: 302 -GSEETANKVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISV 360
Query: 372 GVEGYTDLIADLDQAL 387
G+E DLI DL QAL
Sbjct: 361 GIEDGEDLIEDLAQAL 376
|
Length = 377 |
| >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Score = 409 bits (1053), Expect = e-142
Identities = 185/382 (48%), Positives = 248/382 (64%), Gaps = 4/382 (1%)
Query: 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERC 67
TK +H G D + V PI ++T++Q+ G+P +G+EYSRS NPTR LE
Sbjct: 1 MRMQTKLIHGGISEDT-TTGAVSVPIYQTSTYRQDAIGRP-KGYEYSRSGNPTRFALEEL 58
Query: 68 IASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127
IA LE G ++SGL + AV L +GDH++ GDDVYGGT+R F +V K GL
Sbjct: 59 IADLEGGVKGFAFASGLAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTI 118
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
+D + + K IKPNTK +++E P+NPL+ + D+ ++V K H +L ++DNTF T Y
Sbjct: 119 IDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDH-GLLTIVDNTFATPY 177
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
YQ L G DIV++S TKY+ GHSDVV G TN+++L + F QN++G V P D WL
Sbjct: 178 YQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWL 237
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ RG+KTL R++ H++ ++ VA+FLE HP V+ V +PGLP+HPNHELAK Q G SGML
Sbjct: 238 LQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGML 297
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
SF + E F+ESL +F ESLGG+ESL +PA MTH IPKE R+A GI D LV
Sbjct: 298 SFTLK-NDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLV 356
Query: 368 RLSVGVEGYTDLIADLDQALRK 389
RLSVG+E DL+ DL+QA K
Sbjct: 357 RLSVGIEHEQDLLEDLEQAFAK 378
|
Length = 380 |
| >gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-124
Identities = 163/385 (42%), Positives = 234/385 (60%), Gaps = 10/385 (2%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQ---NTPGQPPQGFEYSRSNNPTRR 62
+ T +H + D+ ++ V PI ++TF Q +T G+ ++YSRS NPTR
Sbjct: 3 MSYSIDTLLLHNQYKHDK-QTGAVNVPIYHASTFHQFDFDTFGK----YDYSRSGNPTRE 57
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE G ++SG+ A++ LLS GDH++ +DVYGGTYR +V + G
Sbjct: 58 ALEDIIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFG 117
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+E FVD+ +E + + IKPNTK+ ++E P+NPL+ V D++ + + K L +DNT
Sbjct: 118 IEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAI-GCLTFVDNT 176
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242
FLT QK L G D+VL+S TK++ GHSDV+ G V D+ L +L FLQNS G V
Sbjct: 177 FLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGV 236
Query: 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302
DCWLV RGLKTL RL+ + ++A +L+ HP V+ V +PGL +H ++ +SQ +
Sbjct: 237 QDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATS 296
Query: 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362
+LSF + E R F+ + + A SLG +ES+ PA+M+H ++PKE RD GI
Sbjct: 297 AGAVLSFTL-QSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGI 355
Query: 363 TDNLVRLSVGVEGYTDLIADLDQAL 387
TD L+RLSVG+E DLIAD +QAL
Sbjct: 356 TDGLLRLSVGLENVDDLIADFEQAL 380
|
Length = 390 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-120
Identities = 162/381 (42%), Positives = 224/381 (58%), Gaps = 4/381 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G D + CV+PPI LSTT+ +P ++YSRS NPTR L++ +A
Sbjct: 5 ATIAVRSGLNSDT-QYGCVVPPIYLSTTYNFTGFNEPRA-YDYSRSGNPTRDLLQQALAE 62
Query: 71 LEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE + ++G+ A+ V T LL D +++ D YGGTYR +A K V FVD
Sbjct: 63 LEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
+ L + K+V IE P+NPL+ V D+ I + K ++V+DNTFL+ Q
Sbjct: 123 QGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV-GAVVVVDNTFLSPALQ 181
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
L G D+VL+S TKY+NGHSDV+ GA + D + L + N++GV FD +L
Sbjct: 182 NPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTL 241
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGL+TL R++ +R + + ++L++ P VK + +PGLP HP HE+A Q G MLSF
Sbjct: 242 RGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSF 301
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
+ GG + R FL L +F AESLGG+ESL PA MTH ++ E R GI+D L+RL
Sbjct: 302 ELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRL 361
Query: 370 SVGVEGYTDLIADLDQALRKA 390
SVG+E DLIADL+Q LR A
Sbjct: 362 SVGLEDADDLIADLEQGLRAA 382
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-116
Identities = 160/381 (41%), Positives = 221/381 (58%), Gaps = 24/381 (6%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASL 71
TK IG+ D+ R+ V PP+ ST ++ G+ GF+YSR+ NPTR LE+ IA L
Sbjct: 7 TKLAQIGNRSDE-RTGTVNPPVYFSTAYRHEGIGES-TGFDYSRTGNPTRGVLEQAIADL 64
Query: 72 EEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131
E G SSG+ A+ V L +GD +I D+YGGTYR F + K + +V+
Sbjct: 65 EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS 191
++ + + I PNTK ++IE PTNPLM D+ AI+ + K+H +LL++DNTF T Q+
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKH-GLLLIVDNTFYTPVLQRP 183
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
L G DIV++S TKY+ GH+DV+ G V L RL + QN+ G V SPFD WL+ RG
Sbjct: 184 LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRG 243
Query: 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311
+KTL R+++HE + +A FL P V VL+P G GMLSF +
Sbjct: 244 MKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP----------------GRGGMLSFRL 287
Query: 312 NGGAEETRI--FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
+E + FL+SL + AESLGG+ES PA TH IP+E R A G+ + L+R
Sbjct: 288 ---QDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRF 344
Query: 370 SVGVEGYTDLIADLDQALRKA 390
SVG+E DLIADL QA ++
Sbjct: 345 SVGIENVEDLIADLKQAFKQV 365
|
Length = 366 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (878), Expect = e-115
Identities = 157/393 (39%), Positives = 236/393 (60%), Gaps = 11/393 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
FATKA+H G D+ + + PI ++TF ++ Q G+ YSR NPT
Sbjct: 9 FATKAIHGGHIGDK-QFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTST 67
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+E +A LE + + +SG+GA++ ++ L AGDH+++ D +YG T+ +
Sbjct: 68 EVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY 127
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV-KQHPDILLVLD 180
G+EV FVD +E + +K NTK+V++E P NP + V D+KAIS + + + + L+ +D
Sbjct: 128 GVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVD 187
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVV 239
NTF T Y Q+ L G D+V++S TKY+NGH DV+ G V ++ + Q +L +++ G V
Sbjct: 188 NTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSV 247
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
PF+ +L+ RG+KTL R+++H + +++VAKFLESHP V+ V +PGL S +ELAK Q
Sbjct: 248 IGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQ 307
Query: 300 WSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
S M+SF + GG EE ++ + ++ + A SLG E+L PA MTH E R
Sbjct: 308 MSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKE 367
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GI+D LVRLSVG+E D+IADL QAL K
Sbjct: 368 AGISDGLVRLSVGLEDVDDIIADLKQALDLIVK 400
|
Length = 400 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 340 bits (873), Expect = e-115
Identities = 150/380 (39%), Positives = 223/380 (58%), Gaps = 5/380 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
+T V+ ++ D + + PI + TFKQ + ++Y+RS NPTR LE +A
Sbjct: 2 STLLVNTDNKNDPYDAS--SMPIYQTATFKQPLAIENGP-YDYTRSGNPTRTALESLLAK 58
Query: 71 LEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130
L++A +SSG+ A+ +T LL+ GD II+GDD+YGGT R QV P+ G+ V VD
Sbjct: 59 LDKADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT 118
Query: 131 RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK 190
++ + + P TK+V +E+PTNPL + D++ IS + + L+V+DNT ++
Sbjct: 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ-NALVVVDNTMMSPLLCN 177
Query: 191 SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250
L G DIV +S TK++ GHSDV+ G + + ++ FLQNS G +PFDCWL+ R
Sbjct: 178 PLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLR 237
Query: 251 GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310
G+KTL R+++ + + +A FL +HP VK V + GLPSHP L SQ G +LSF
Sbjct: 238 GIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSF- 296
Query: 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLS 370
G ++ +E+ +F S G + SL +P M+H SIP E R+ G+ ++LVRLS
Sbjct: 297 ETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLS 356
Query: 371 VGVEGYTDLIADLDQALRKA 390
VG+E DLI+DLD A A
Sbjct: 357 VGIEDVDDLISDLDIAFVTA 376
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-112
Identities = 160/391 (40%), Positives = 231/391 (59%), Gaps = 13/391 (3%)
Query: 7 DTAFATKAVHIGSEP-DQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNN 58
FAT+A+H G P DQ+ + + PPI ++TF ++ Q G+ YSR N
Sbjct: 1 RMTFATRAIHAGYPPKDQFGA--LTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGN 58
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQV 117
PT NLE IA LE + + SSG+GA+ A + +L AGDH+IS + +YG T+
Sbjct: 59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHA 118
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
K G++VDF+++ E + +IK NTK+V+ E P NP M + D++ + + +
Sbjct: 119 LTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQ-GVKV 177
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSM 236
++DNTF T + GVD+V++S TKY+ GH DVV G + LQ R+ +++
Sbjct: 178 IVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G V SPFD WL+ RGLKTL R+K H +++VA++L+SHP V+ V +PG HP H++A
Sbjct: 238 GSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIA 297
Query: 297 KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
Q GM++F + GG + L +L + R A SLG E+L PA MTH +PKE
Sbjct: 298 AKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEE 357
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R+A GITD ++RLSVG+E DLIADL QAL
Sbjct: 358 REAAGITDGMIRLSVGLEDADDLIADLKQAL 388
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-107
Identities = 154/428 (35%), Positives = 226/428 (52%), Gaps = 48/428 (11%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP--------GQPPQGFEYSRSN 57
+ F T AVH G E ++ V PI +T++ + + P G Y+R
Sbjct: 4 ANWGFETLAVHAGQEDPTTGARAV--PIYQTTSYVFDDTDHAAALFGLKEP-GNIYTRIM 60
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE IA+LE L +SG A+T L AGD+I+S +YGGTY F+
Sbjct: 61 NPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSH 120
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
++G+EV FVD EN I NTK V+ E NP + V D++AI+ + +H +
Sbjct: 121 TLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRH-GVP 179
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------- 219
L++DNTF T Y + + G DIV++S TKY+ GH + G V
Sbjct: 180 LIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFT 239
Query: 220 TNDDSLQ----------------ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
T D S AR++ L++ +G SPF+ +L+ +GL+TL R++ H
Sbjct: 240 TPDPSYHGLVYTETFGNAAFIIKARVQLLRD-LGATLSPFNAFLLLQGLETLSLRMERHC 298
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA-KSQWSGTSGMLSFYVNGGAEETRIFL 322
+++VA+FLE+HP V V +PGL SHP H LA K G +L+F V GG E + F+
Sbjct: 299 ENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFI 358
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
++L +F ++G SL PA TH+ + +E + A G+T +L+RLSVG+E D+IAD
Sbjct: 359 DALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDIDDIIAD 418
Query: 383 LDQALRKA 390
L+QAL A
Sbjct: 419 LEQALEAA 426
|
Length = 426 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-107
Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 16/392 (4%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNN 58
+ T +H G ++ + + PP+ ++TF T Q + YSR N
Sbjct: 2 KKKHMETALIHHGYTSEEHKGS-LTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGN 60
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQV 117
PT + E +A LE + L + SG+ A++A L AGDHII + +YG TY + +
Sbjct: 61 PTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVL 120
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
K + F D+ ++ I+PNTK++++E P NP M + D+K + V K++ +L+
Sbjct: 121 EEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRN-GLLV 179
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
++DNTF + Y Q+ L G D V++S TKY+ GH DVV G T+ +L +++ ++ +G
Sbjct: 180 IVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIG 239
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
+ +PFD WL+ RGLKTL R+ H + ++ FL++H V+GV +P ELA
Sbjct: 240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVW------YPEGELAS 293
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
Q G++SF + GG EET+ F+ L A SLG E+L PA MTH +IP E R
Sbjct: 294 RQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELR 353
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+GI DNL+RLSVG+E + D+++DL+QAL+K
Sbjct: 354 QEMGIYDNLIRLSVGLESWEDIVSDLEQALKK 385
|
Length = 386 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = e-107
Identities = 157/403 (38%), Positives = 222/403 (55%), Gaps = 14/403 (3%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNT--------PGQPPQGFE 52
M +T F+T+A+H G +P ++PP+ L+ TF T G+ G
Sbjct: 1 MRDSHNNTGFSTRAIHHGYDPLD-HGGALVPPVYLTATFAFPTAEYGAECFAGEEE-GHF 58
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTY 111
YSR +NPT LE+ +ASLE + + +SG+GA+TA LL GD +I +YG T+
Sbjct: 59 YSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTF 118
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ + G+ V VDL L I T+MV+ E P NP M + D+ A++ +
Sbjct: 119 AFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHG 178
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLK 230
+V+DNT+ T Y Q+ L G D+V++S TKY+ GH D+ G V RL+
Sbjct: 179 A-GAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLE 237
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L++ G V SPFD +L+ RGLKTL R+ H + VA++L HP V+ V +PGLPS
Sbjct: 238 GLKDMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSF 297
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
H LA+ Q + GM++F + GG R F+ +L +F A SLG ESLA PA MTH
Sbjct: 298 AQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHS 357
Query: 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACKV 393
+ E R GI++ LVRLSVG+E D++ADL QAL AC V
Sbjct: 358 TYTPEERAEHGISEGLVRLSVGLEDVADILADLAQAL-DACAV 399
|
Length = 403 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (806), Expect = e-105
Identities = 154/384 (40%), Positives = 221/384 (57%), Gaps = 4/384 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G E D + V+PPI LST + G+ P+ ++Y+RS NP R LE+ ++
Sbjct: 7 ATIAVRTGIESDS-QYHAVVPPIYLSTNYGFPAFGEVPK-YDYTRSGNPNRGLLEQTLSE 64
Query: 71 LEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE K + + G A+ V+ LL D I++ D YGGTYR F A K +V FVD
Sbjct: 65 LESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVD 124
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
L + K++ +E P+NPL+ V D+ + K L+ +DNTFLT Q
Sbjct: 125 QSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA-VGALVAVDNTFLTPVLQ 183
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
K L G D V++S TKY+NGHSDV+ G +T L + N +G +PFD ++
Sbjct: 184 KPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTL 243
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RG++TL R++ HE + ++ +L++ V + HP LP HP HE+AK Q SG MLSF
Sbjct: 244 RGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSF 303
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
G E+ ++F+++L +F AESLGG+ESL PA MTH+++ +E G++ L+RL
Sbjct: 304 EFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRL 363
Query: 370 SVGVEGYTDLIADLDQALRKACKV 393
SVG+E DLIADLDQA KA +
Sbjct: 364 SVGLEDAQDLIADLDQAFAKAAEA 387
|
Length = 388 |
| >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-103
Identities = 146/359 (40%), Positives = 221/359 (61%), Gaps = 5/359 (1%)
Query: 31 PPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA 89
P+ + TFKQ P G ++Y+RS NPTR LE +A L++A C++SG+ A++A
Sbjct: 106 TPLYQTATFKQ--PSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA 163
Query: 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWI 149
VTHL+ G+ I++GDDVYGG+ R +QV P+ G+ V V+ ++ + I P TK+VW+
Sbjct: 164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL 223
Query: 150 ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNG 209
E+PTNP + D++ I+ + ++LV DN+ ++ + L G DIV++S TK++ G
Sbjct: 224 ESPTNPRQQISDIRKIAEMAHAQGALVLV-DNSIMSPVLSRPLELGADIVMHSATKFIAG 282
Query: 210 HSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
HSDV+ G + L + FLQNS G +PFDCWL RG+KT+ R+++ + + ++
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKI 342
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329
A +L SHP VK V + GLP HP H L SQ G + SF + G ++ +E+ F
Sbjct: 343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFS 401
Query: 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
A S G ++SL +P M+H SIP E R+A G+T++LVR+S G+E DLI+DLD A R
Sbjct: 402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFR 460
|
Length = 464 |
| >gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = e-101
Identities = 163/382 (42%), Positives = 222/382 (58%), Gaps = 6/382 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G + D V PPI+LS+ F + G Q ++Y+RS NPTR L +A
Sbjct: 14 ATAAVRAGIDRDTAYG-AVTPPIVLSSNFSFDGFGNKRQ-YDYTRSGNPTRDLLGEALAE 71
Query: 71 LEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE G+ ++G+GA+ V + LL GD ++ D YGG++R F +A K + D
Sbjct: 72 LEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITAD 131
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKA-ISAVVKQHPDILLVLDNTFLTAYY 188
L +L + + K+V IE P+NPL+ + D++ I A K L V+DNTFL+
Sbjct: 132 LTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV--GALTVVDNTFLSPAL 189
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
QK L +G D+VL+S TKY+NGHSDVV GA V D L +L + N++G+ SPFD +L
Sbjct: 190 QKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLT 249
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL RL+ H+ + +A L+ H V V +PGL SHP H LA Q G MLS
Sbjct: 250 LRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLS 309
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F + GG R F++ L F AESLGG+ESL PA MTH ++ E R A GI+D L+R
Sbjct: 310 FELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLR 369
Query: 369 LSVGVEGYTDLIADLDQALRKA 390
LSVG+E DL+ DL L +A
Sbjct: 370 LSVGIESAEDLLIDLRAGLARA 391
|
Length = 405 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (779), Expect = e-101
Identities = 151/383 (39%), Positives = 221/383 (57%), Gaps = 4/383 (1%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIAS 70
AT AV G D+ + CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 6 ATIAVRSGLNDDE-QYGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALAE 63
Query: 71 LEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
LE + ++G+ A+ V T L GD +++ D YGG+YR F +A + V FVD
Sbjct: 64 LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189
+ L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+ Q
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLARE-AGAVSVVDNTFLSPALQ 182
Query: 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249
L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 183 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 242
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLSF
Sbjct: 243 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF 302
Query: 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369
++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R+
Sbjct: 303 ELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRI 362
Query: 370 SVGVEGYTDLIADLDQALRKACK 392
S G+E DLIADL+ R A K
Sbjct: 363 STGIEDGEDLIADLENGFRAANK 385
|
Length = 386 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = e-100
Identities = 156/389 (40%), Positives = 215/389 (55%), Gaps = 20/389 (5%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-PQGFE--YSRSNNPTRRNLERC 67
T AV D + S + PPI L+ F+Q P +GF+ YSR NPT R LE
Sbjct: 4 GTDAVRGYRGSDPYGS--LQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEA 61
Query: 68 IASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126
+A LE L ++SG+ A++ + LL AGD ++ + YG T R + K G
Sbjct: 62 LAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLR-LLKSLEKFG---- 116
Query: 127 FVDLRKI----ENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
V + E++I+ IK TK+V+IE TNP + V DV ++ K+ +LV+DN
Sbjct: 117 -VKVVLAYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKEL-GAILVVDN 174
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF T + L G D V++SLTKY+ GH+DVV G V L + +G +
Sbjct: 175 TFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQ 234
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
PF+ +LV RGLKTL R + R ++ +A+FL HP V V +PGLPS P H +AK +
Sbjct: 235 PFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFG 294
Query: 302 GT--SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359
G++SF V GG + FL SL + + + SLGG+ESLA P + IP+E R A
Sbjct: 295 KDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKA 354
Query: 360 LGITDNLVRLSVGVEGYTDLIADLDQALR 388
LGIT++LVRLSVG+E DLI DLDQAL
Sbjct: 355 LGITEDLVRLSVGLEDVEDLIEDLDQALG 383
|
Length = 385 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 4e-98
Identities = 154/420 (36%), Positives = 227/420 (54%), Gaps = 46/420 (10%)
Query: 10 FATKAVHIGSEPD-QWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTR 61
F T +H G EPD S+ V PI +T++ ++ F YSR NPT
Sbjct: 2 FETLQLHAGQEPDPTTGSRAV--PIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTT 59
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
LE+ IA+LE L +SG A+T A+ +L AGD+I+S +YGGTY F +
Sbjct: 60 DVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR 119
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
+G+EV FVD E K I NTK V+ E NP + V D++AI+ V H + L++D
Sbjct: 120 LGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAH-GVPLIVD 178
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TNDDS 224
NTF T Y + + G DIV++S TKY+ GH + G V T D S
Sbjct: 179 NTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS 238
Query: 225 ----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
++AR++ L++ +G SPF+ +L+ +GL+TL R++ H +++
Sbjct: 239 YHGLVFTETFGNPAFIVKARVQLLRD-LGAALSPFNAFLLLQGLETLSLRMERHVENALK 297
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLLI 327
VA+FLE+HP V V +PGL SHP+H LAK G +LSF + GG E + F+++L +
Sbjct: 298 VAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKL 357
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
++G +SL PA TH+ + +E + G+T L+RLSVG+E D+IADL+QAL
Sbjct: 358 ASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQAL 417
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 1e-96
Identities = 155/386 (40%), Positives = 221/386 (57%), Gaps = 26/386 (6%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
+ +D T G + D+ + ++ P+ STT++ GQ GF+Y+R+ NPTR
Sbjct: 1 MSKDLHINTILAQAGIKSDE-ATGALVTPLHFSTTYQHPEFGQS-TGFDYTRTKNPTRAK 58
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LE +A++E A + L SSG+ A+ + G +++ D+YGG++R+F Q K G
Sbjct: 59 LEETLAAIESADYALATSSGMSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQ-QEKEG- 116
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
F E LI I+ +T +V+IE PTNPLM FD++ ++ + ++V DNTF
Sbjct: 117 RFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIV-DNTF 175
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
+ YQ+ + G DIVL+S TKY++GH+DV+ G VTND L +L + N+ G V SPF
Sbjct: 176 YSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPF 235
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D +L+ RGLKTL R++ + EV FL+ P VK VL+ G
Sbjct: 236 DSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK---------------- 279
Query: 304 SGMLSFYVNGGAEETRI--FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
GM+SF V A+ETRI L SL +F AESLGG+ESL P TH IP E R + G
Sbjct: 280 GGMISFKV---ADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYG 336
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
+TD+L+RLS+G+E DLIADL QAL
Sbjct: 337 LTDDLLRLSIGIEDARDLIADLKQAL 362
|
Length = 364 |
| >gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 7e-96
Identities = 131/390 (33%), Positives = 213/390 (54%), Gaps = 13/390 (3%)
Query: 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQN--------TPGQPPQGFEYSRSNN 58
+ TKAV G E + P++LS + + G+ P G YSR+ N
Sbjct: 6 NAGVGTKAVWAG-EKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKP-GHIYSRNTN 63
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQV 117
PT + E + LE A+ +S+G+ A++ + L GD ++S D YGGT + F +
Sbjct: 64 PTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEF 123
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
P++G++V + E + I ++++E PTNP + + D++ ++A K+ L+
Sbjct: 124 LPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKV-GALV 182
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
V+DNTF T Q L G D+V++S TK+++GH+D +G V L ++ + G
Sbjct: 183 VVDNTFATPINQNPLALGADLVIHSATKFLSGHADA-LGGVVCGSKELMEQVYHYREING 241
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
P +L+ RG+KTL R+++ + ++ +AK+L++HP V+ V +PGL +HPNHE+AK
Sbjct: 242 ATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAK 301
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
+Q G G+LSF + GG + + L L A +LG +E++ +H E R
Sbjct: 302 AQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEER 361
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQAL 387
ALGI + LVR+SVG+E DLIADL+QA
Sbjct: 362 AALGIPEGLVRISVGIEDTEDLIADLEQAF 391
|
Length = 398 |
| >gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 5e-94
Identities = 146/391 (37%), Positives = 220/391 (56%), Gaps = 26/391 (6%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTF----------KQNTPGQPPQGFEYSRSNNP 59
F T+AV G D R V PI ++TF +T G P + Y+R NP
Sbjct: 9 FNTRAVQSGELRDP-RFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMP---YIYTRWGNP 64
Query: 60 TRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVA 118
T + E A LE A+H L +SSG+GA+T A+ L+ G I+S D+YG T+ +F +V
Sbjct: 65 TVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVL 124
Query: 119 PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
+G+ VD++D ++ +L + N +++ E+ TNP + V D+K +S+ ++ ++
Sbjct: 125 KTLGIHVDYIDTDRLNSL-DFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEN---DVI 180
Query: 179 LDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238
+D TF + Y Q L G D+V++S TKY++GHSDVVMG TN+ S+ L + ++G
Sbjct: 181 VDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGS 240
Query: 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298
P P +L RGLKTL R+++H + +E+A+FL + V +P E+ K
Sbjct: 241 NPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDT------EIGKK 294
Query: 299 QWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358
G GMLSF + E+ F+ +L I A SLGG+ESL LP E +H S+ E R+
Sbjct: 295 VLRGFGGMLSFELR-SMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERE 353
Query: 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
LGI+DNLVR S+G+E DLI D++ AL K
Sbjct: 354 RLGISDNLVRFSIGIEDIDDLIKDIENALSK 384
|
Length = 384 |
| >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 9e-93
Identities = 133/392 (33%), Positives = 214/392 (54%), Gaps = 12/392 (3%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPP-------QGFEYSRSN 57
F T AV G + + L+++F + + G YSR
Sbjct: 2 DDSLGFDTLAVRAGQLRSPFGEHS--EALFLTSSFVFESAAEAAARFAGEEPGNIYSRFT 59
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVT-HLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT + +A+LE A+ + +SG+ A+ AV LL AGDH++S ++G T F +
Sbjct: 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEK 119
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
+ + G+E FVDL ++ ++PNTK+ ++E P+NPL + D+ A++ + L
Sbjct: 120 IFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAA-GAL 178
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236
LV+DN F T Q+ L G D+V++S TKY++G V+ GA V + + ++ FL+ +
Sbjct: 179 LVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR-TA 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G SPF+ W+ +GL+TL R++ H ++ +A++LE+HP V+ V +PGLPSHP HELA
Sbjct: 238 GPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELA 297
Query: 297 KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356
K Q G ++SF V GG E +++ + +LG ++ PA TH + E
Sbjct: 298 KRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEA 357
Query: 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
R A GIT+ L+R++VG+E D+ ADL + L
Sbjct: 358 RAAAGITEGLIRVAVGLEDVADIKADLARGLA 389
|
Length = 390 |
| >gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 3e-88
Identities = 123/339 (36%), Positives = 200/339 (58%), Gaps = 3/339 (0%)
Query: 50 GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYG 108
GF YSR NPT E +A LE A+ + +SG+ A+ A+ LL AGDH+++ ++G
Sbjct: 45 GFVYSRYGNPTVSVFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFG 104
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168
+ +++ P+ G++ FVD + +KPNTK V++E P+NPL + D+ A++ +
Sbjct: 105 SCFVVCSEILPRFGVQTVFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAEL 164
Query: 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR 228
+V+DN F T Q+ L G D+V+YS TK+++G V+ GA + +++ +
Sbjct: 165 A-HAAGAKVVVDNVFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEP 223
Query: 229 LKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLP 288
++ L G SPF+ W++ +GL+TL R++ ++ +A++L HP V+ V +PGLP
Sbjct: 224 VQKLLRHTGPAMSPFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLP 283
Query: 289 SHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT 348
SHP HELAK Q SG +++F ++ + L+++ + + +LG +S PA T
Sbjct: 284 SHPQHELAKRQMSGGGTVVTFDLDCRQAAFK-VLDAMRLVDISNNLGDAKSTITHPATTT 342
Query: 349 HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
H+ + E R A GI D LVRLSVG+E DLIAD+D+AL
Sbjct: 343 HRRMGPEERAAAGIGDGLVRLSVGLEDVDDLIADIDRAL 381
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381 |
| >gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (675), Expect = 2e-85
Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 7/359 (1%)
Query: 35 LSTTFKQNTPGQPPQG--FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVT 91
++T Q T P+G + YSR NPT L + I LE A+ G+ +SSG+GA+ T
Sbjct: 19 ITTPIYQTTAYHYPEGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTAL 78
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIE 150
LL G+ ++ D++G +YR+F G+ VD +N+I+ K +V++E
Sbjct: 79 ALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD-ASNPGSDNIIEKAKSKRYDVVFVE 137
Query: 151 NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGH 210
N TNPL+ V D+ +S V K++ IL+V D TF T QK L G DIV++S +K++ GH
Sbjct: 138 NITNPLLRVVDITELSKVCKENGSILIV-DATFSTPINQKPLELGADIVVHSASKFLAGH 196
Query: 211 SDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270
+DV+ G L + ++ ++G P +L RG+KTL R+ R + ++A
Sbjct: 197 NDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIA 255
Query: 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRC 330
+FLE HP V V +PGL SH ++E+A+ G G+LSF VNGG E ++SL +
Sbjct: 256 EFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIP 315
Query: 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
A++LGG+ S+ PA M+H+++ E R +GITD+L+RLSVG+E DLI DLD+AL
Sbjct: 316 AQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALST 374
|
Length = 376 |
| >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 1e-84
Identities = 128/341 (37%), Positives = 203/341 (59%), Gaps = 13/341 (3%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTY 111
YSR +NPT R E +A LE A+ ++SG+ A+++ V + GD I++ VY +
Sbjct: 57 YSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAF 116
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
R F + ++G+EVD+VD R E + K + P K++++E+PT+ + + DV A++A+ K+
Sbjct: 117 RLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKR 175
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231
H ++ ++DN++ + +Q+ + GVD+V++S +KY+ GHSD V G V AR+
Sbjct: 176 H-GVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAG-VVAGSKEHIARINA 233
Query: 232 LQNS-MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
+G SPF+ WL+ RGL+TLP R+K HE ++E+A+ L++HP V+ V HP L +H
Sbjct: 234 EAYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANH 293
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
P + SGTSG+ SF G + R F ++L +FR S GG ESL +PAE+ +
Sbjct: 294 P-----PAGLSGTSGLFSFIFREGI-DVRAFADALKLFRLGVSWGGHESLV-VPAEVVLQ 346
Query: 351 SIPKETR-DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+ G++ VRL VG+EG L ADL+QAL A
Sbjct: 347 QKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA 387
|
Length = 389 |
| >gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 5e-82
Identities = 150/425 (35%), Positives = 225/425 (52%), Gaps = 47/425 (11%)
Query: 12 TKAVHIGSEPDQWR-SQCVIPPIILSTTF-------KQNTPGQPPQGFEYSRSNNPTRRN 63
T A+H G E D S+ V PI +T++ N G Y+R NPT
Sbjct: 11 TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
E+ IA+LE L SSG A+T ++ ++ SAGD I+S +YGGTY FA PK+G
Sbjct: 69 FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ V FVD EN I TK ++ E NP V D++A++A+ +H I L++DNT
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEH-GIPLIVDNT 187
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV-----------------TNDDS- 224
F + Y + + G DIV++S TK++ GH + G V D S
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247
Query: 225 ---------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+AR++ L++ +G SPF+ +L+ +GL+TL R++ H ++ V
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRD-LGAALSPFNSFLLLQGLETLHLRMERHSENALAV 306
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIF 328
AKFLE H V+ V +PGLPSHP++ELAK G +L+F + GG E + ++S+ +F
Sbjct: 307 AKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLF 366
Query: 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
++G +SL PA TH+ + +E + A G+T LVRLSVG E D++ DL QA+R
Sbjct: 367 SHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEAIDDILDDLRQAIR 426
Query: 389 KACKV 393
++ V
Sbjct: 427 QSQTV 431
|
Length = 431 |
| >gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 5e-79
Identities = 134/393 (34%), Positives = 197/393 (50%), Gaps = 32/393 (8%)
Query: 29 VIPPIILSTTFKQNT-----------------PGQPPQGFEYSRSNNPTRRNLERCIASL 71
V PP+ L++TF + P G YSR N+P +E +A
Sbjct: 36 VKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY 95
Query: 72 EEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE-VDFVD 129
E A+ +SSG+ A+ T + + GD I+ +YGGT A+ G+ V F D
Sbjct: 96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD 155
Query: 130 LRKIENLIKYI-----KPNTKMVWIENPTNPLMTVFDVKAISAVV-----KQHPDILLVL 179
+ K ++ IE P NP ++ DV A+ V +Q ++
Sbjct: 156 GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIAC 215
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNT L +QK L G D+ +YSLTKY+ GHSD+V GA V +L +++ L++++G
Sbjct: 216 DNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGA-VLGRKALIRQVRALRSAIGTQ 274
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV-LHPGL-PSHPNHELAK 297
P CW++ R L+TL R++ R + VA+FL HP V+ + P L P + K
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYK 334
Query: 298 SQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
Q +G SF + GG FL +L IF+ A SLGG ESLA PA MTH +P + R
Sbjct: 335 RQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVR 394
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+ +G+ ++ +RLS+G+E DLIADL QAL A
Sbjct: 395 ERIGVLESTIRLSIGIEHPDDLIADLAQALDAA 427
|
Length = 427 |
| >gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 9e-78
Identities = 128/354 (36%), Positives = 202/354 (57%), Gaps = 9/354 (2%)
Query: 39 FKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAG 97
FK PG F YSR +NPT E+ + +LE A+ +SG+ AVT A+ + AG
Sbjct: 50 FKGEDPG-----FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAG 104
Query: 98 DHIISGDDVYGGTYRYFAQ-VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPL 156
DH+++ ++G + RY + + P+ G+E VD ++N K ++PNTK+ ++E+PTNP
Sbjct: 105 DHVVAARALFG-SCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPT 163
Query: 157 MTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMG 216
+ V D+ A++ + Q LV+DN F T +QK L G IV+YS TK+++G + G
Sbjct: 164 LEVIDIAAVAKIANQA-GAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGG 222
Query: 217 ATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH 276
+++ ++ L+ G SPF+ W + +GL+TLP R+++ + +A FL H
Sbjct: 223 VVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGH 282
Query: 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGG 336
P V V++PG HP ++ Q +G S +++F + GG E FL +L I R + +LG
Sbjct: 283 PKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGD 342
Query: 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+SL PA THK++ E R LGI++ +RLS G+E DLI DL AL+K
Sbjct: 343 AKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV 396
|
Length = 398 |
| >gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 4e-76
Identities = 146/424 (34%), Positives = 216/424 (50%), Gaps = 46/424 (10%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTT---FKQNTPGQPPQGFE-----YSRSNNPT 60
+F TK +H G PD + +P I TT F G Y+R NPT
Sbjct: 13 SFETKQIHAGQTPDPATNARALP--IYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPT 70
Query: 61 RRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119
+ +E+ IA+LE L +SG A T A+ +L AGDHI+S +YGGTY F P
Sbjct: 71 QDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLP 130
Query: 120 KIGLEVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178
K+G+EV FV D ++ ++PNTK + E +NP + V D+ ++ V + + L+
Sbjct: 131 KLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEA-GVPLI 189
Query: 179 LDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TND 222
+DNT T Y + L G DIV++S TKY+ GH + G V T D
Sbjct: 190 VDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPD 249
Query: 223 DS---------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
S L+AR++ L++ +G SPF+ +L+ +GL+TL R++ H +
Sbjct: 250 PSYHGVVFAELGPPAYALKARVQLLRD-LGSAISPFNAFLIAQGLETLSLRIERHVANAQ 308
Query: 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLL 326
VA+FLE+ V V + GLPS P +E AK GT +LSF + GG E + F+ +L
Sbjct: 309 RVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALT 368
Query: 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386
+ ++G + SL PA TH + E + A G+T LVRL+VG+EG D++ADL+
Sbjct: 369 LHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIEGIDDILADLEAG 428
Query: 387 LRKA 390
A
Sbjct: 429 FAAA 432
|
Length = 436 |
| >gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-75
Identities = 137/431 (31%), Positives = 205/431 (47%), Gaps = 45/431 (10%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSN 57
F T A+H G+ PD +P I L+T+F F YSR +
Sbjct: 4 MSPPGFDTLALHAGAAPDPATGARAVP-IHLTTSFVFRDSDHAAALFNLERAGHVYSRIS 62
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE +A+LE + +SG A+ A+ L+ AG HI++ +YGG++
Sbjct: 63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHY 122
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
+ G+E FV I+ I+PNT++++ E NP + V D+ ++A+ + L
Sbjct: 123 TLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPL 182
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVT---------------- 220
LV D+TF T Y + G D+V +S TK++ GH + G V
Sbjct: 183 LV-DSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELT 241
Query: 221 -----------NDDS------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
++S L+AR + L++ G SP + W + +G++TLP R++ H
Sbjct: 242 EPYAGFHGMVFAEESTVAAFLLRARREGLRD-FGACLSPMNAWQLLQGIETLPLRMERHV 300
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFL 322
+ +V FL SHP V V HP L SHP+H LAK G + SF + GG R F+
Sbjct: 301 ANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFI 360
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
ESL +F ++G SL PA TH + A GI + +RLS+G+E DLI D
Sbjct: 361 ESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLIDD 420
Query: 383 LDQALRKACKV 393
L +AL+ A K
Sbjct: 421 LKRALKAAEKA 431
|
Length = 433 |
| >gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 4e-75
Identities = 122/335 (36%), Positives = 180/335 (53%), Gaps = 16/335 (4%)
Query: 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQV 117
PT L + +A +E +H L SGL A++ V L+ AGD ++ D+ YG + +
Sbjct: 65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWL 124
Query: 118 APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177
A G+ V F D + I+PNT+++W+E P + M V DV AI+A + ++
Sbjct: 125 ARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARAR-GVVT 183
Query: 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237
+DNT+ K GVDI + +LTKY +G SDV+MGAT+T D L A+LK + +G
Sbjct: 184 AIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLG 243
Query: 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAK 297
+ S DC LV RGL +L RL H+R ++EVA++L++ P + VLHP LP P H
Sbjct: 244 IGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWM 303
Query: 298 SQWSGTSGMLSFYVNGGAEETRI--FLESLLIFRCAESLGGIESLA---DLPAEMTHKSI 352
++G G+ S + ++ F+E+L +F S GG SLA D+ + T K
Sbjct: 304 RDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAK-- 361
Query: 353 PKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
LVRL +G+E DLIADL+QAL
Sbjct: 362 -------WPHRGTLVRLYIGLEDEADLIADLEQAL 389
|
Length = 394 |
| >gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 9e-75
Identities = 121/350 (34%), Positives = 196/350 (56%), Gaps = 20/350 (5%)
Query: 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGG 109
F YSR NPT E + +E A+ +SG+ AV TA+ LL AGD +++ ++G
Sbjct: 62 FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS--- 166
+ ++ P+ G+E FVD + + + T+ V+ E P+NP+ ++ D+ A+S
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELA 181
Query: 167 ----AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222
A V VLDN F T Q+ LP G D+V+YS TK+++G V+ GA + +
Sbjct: 182 HAAGAKV--------VLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDR 233
Query: 223 DSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV 282
+ + ++ L G S F+ W++ +GL+TL R++ ++ +A+FLE HP V+ V
Sbjct: 234 EYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWV 293
Query: 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR----IFLESLLIFRCAESLGGIE 338
+P LPSHP ++LAK Q SG +++F ++ + + L+ L + + +LG +
Sbjct: 294 RYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAK 353
Query: 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388
SL PA TH+++ E R A+G+ D +VRLSVG+E DLIADLD+AL
Sbjct: 354 SLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRALG 403
|
Length = 403 |
| >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 233 bits (595), Expect = 8e-73
Identities = 141/423 (33%), Positives = 218/423 (51%), Gaps = 48/423 (11%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRRNL 64
T A+H G PD ++ V PI +T++ + F+ Y+R NPT L
Sbjct: 5 TLAIHAGYSPDP-TTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVL 63
Query: 65 ERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
E+ +A+LE L +SG+ A+T A+ + AGD+I+S +YGGTY A P+IG+
Sbjct: 64 EQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI 123
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
E F I L I TK V+ E+ NP + D++A++ +H + L++DNT
Sbjct: 124 ETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRH-GVPLIVDNTV 182
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV------------------TNDDSL 225
T + G DIV++SLTKY+ GH + G V T D S
Sbjct: 183 ATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSY 242
Query: 226 ----------------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+ R+ L+N MG SPF+ +L+ +GL+TL R++ H +++V
Sbjct: 243 HGVTYTEAFGPAAFIGRCRVVPLRN-MGAALSPFNAFLILQGLETLALRMERHTENALKV 301
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT-SGMLSFYVNGGAEETRIFLESL-LI 327
A++L+ HP V V + GLP HP HELA+ G + +LSF + GG F+++L L+
Sbjct: 302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLV 361
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R ++G +SLA PA TH+ + E + G++ ++VRLS+G+E D+IADL QAL
Sbjct: 362 VRLV-NIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQAL 420
Query: 388 RKA 390
+
Sbjct: 421 DAS 423
|
Length = 425 |
| >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 7e-72
Identities = 123/385 (31%), Positives = 194/385 (50%), Gaps = 14/385 (3%)
Query: 12 TKAVHIGSEP-DQWRSQCVIPPIILSTTF---KQNTPGQPPQGFEYSRSNNPTRRNLERC 67
T+ +H G +P S V PP+ ++T + Y R T L+
Sbjct: 1 TRLIHSGRQPRFSQGS--VNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDA 58
Query: 68 IASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126
+ LE Y SGL AVT ++ + AGDH++ D Y T + V ++G+++
Sbjct: 59 MCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDIT 118
Query: 127 FVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA 186
+ D E++ I+PNTK++++E P++ + D+ AI+ + P I++++DNT+
Sbjct: 119 YYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARN-PGIVIMIDNTWAAG 177
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
K L GVDI + + TKY+ GHSD+++G V N + +L+ MG + D +
Sbjct: 178 LLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTW-DQLREHSYLMGQMVDADDAY 236
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306
RGL+TL RLK+H+ S+ +AK+L P V VLHP LPS P HE K +SG+SG+
Sbjct: 237 TTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGL 296
Query: 307 LSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365
SF + ++ FL+ L +F S GG ESLA L + P R+ +
Sbjct: 297 FSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLA-LCNQPELGHRPNIKRN---LEGP 352
Query: 366 LVRLSVGVEGYTDLIADLDQALRKA 390
L+R+ +G+E DL ADL
Sbjct: 353 LIRVHIGLENVDDLKADLKAGFEAI 377
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377 |
| >gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 2e-71
Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%)
Query: 12 TKAVHIGSEPDQWRSQCVIPPIILSTTF---KQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
T+ H G++P + V PP++ ++T T Q + Y PT L + I
Sbjct: 15 TRLAHDGNDPGDYHG-FVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAI 73
Query: 69 ASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127
+LE + + SGL AVT LS GDH + D VY T + + ++G+EV++
Sbjct: 74 DALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEY 133
Query: 128 VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
D + K ++PNTK+V E P + + D+ AI+ +H ++++DNT+ T
Sbjct: 134 YDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH-GAIVMMDNTWATPL 192
Query: 188 YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247
Y + L +GVDI +++ TKY +GHSD+++G TV+ ++ +L ++G+ P D +
Sbjct: 193 YFRPLDFGVDISIHAATKYPSGHSDILLG-TVSANEKCWPQLLEAHGTLGLCAGPDDTYQ 251
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ RGL+T+ RL+ H + ++E+A++LE P V VLHP LPS P HE+ K +SG SG+
Sbjct: 252 ILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIF 311
Query: 308 SFYVNGGAE----ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
SF + G E + FL++L IF S GG ESLA L ++ +++ K
Sbjct: 312 SFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLA-LHVKLGDRTVAKAPYAG---- 366
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRKACKV 393
++RL +G+E DL ADL++ A V
Sbjct: 367 -PVIRLQIGLEDVPDLKADLERGFAAASAV 395
|
Length = 395 |
| >gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 6e-71
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 22/382 (5%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIA 69
T++VH G P+ + V+P + + + + P G Y R++NPT R LE +
Sbjct: 5 GTRSVHAGG-PEAVPGEPVLPGPVFAAPY--HLSPGEPTGPDTYGRASNPTWRALEAALG 61
Query: 70 SLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE A L + SG+ A+TAV LL GD ++ D Y + +G+ V
Sbjct: 62 ELEGA-EALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREA 120
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+ + +V E P+NP + V D+ A++A LLV+DNT T
Sbjct: 121 ---PTAGMAEAALAGADLVLAETPSNPGLDVCDLAALAAAAHAA-GALLVVDNTTATPLG 176
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q+ L G D+V+ S TK + GHSD+++G D L A ++ + G +P PF+ WL
Sbjct: 177 QRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLA 236
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
R L TL R ++ VA+ L HP V+GV +PGLP P HE+A Q G++S
Sbjct: 237 HRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVS 296
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F + A F+ + + A S GG+ + AD A DA + + VR
Sbjct: 297 FEL-ADAAAAERFVAASRLVVAATSFGGVHTSADRRARWG---------DA--VPEGFVR 344
Query: 369 LSVGVEGYTDLIADLDQALRKA 390
LS G+E DL+ADL++AL
Sbjct: 345 LSCGIEDTDDLVADLERALDAL 366
|
Length = 366 |
| >gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 4e-69
Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 41/369 (11%)
Query: 50 GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYG 108
GF Y+R PT LE I +E +C+++G+ A+ AV LL AGDH++S ++G
Sbjct: 38 GFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFG 97
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168
T F + +G+EV VD ++N+ I+PNT+MV++E NP V D+ I A+
Sbjct: 98 NTNSLFGTLR-GLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGAL 156
Query: 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN----DDS 224
++ +L V+DNT + + + G +V+ SL+KY+ GH + + GA VT+ D S
Sbjct: 157 CRER-GLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGA-VTDTGLFDWS 214
Query: 225 -------------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERG 265
Q R K L++ MG S + G +TL R+
Sbjct: 215 AYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MGATLSSEAAHRIAIGAETLALRVDRSCSN 273
Query: 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325
++ +A+FLE+HP V V +PGL SHP H A + G+LSF + G + FL L
Sbjct: 274 ALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-IDCFDFLNRL 332
Query: 326 LIFRCAESLGGIESLADLPA------EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379
+ A LG +L +P EM E R ++GI D+L+R+SVG+E DL
Sbjct: 333 KLVIKATHLGDTRTLV-IPVAPTIYYEMG-----AERRASMGIADSLIRVSVGIEDEADL 386
Query: 380 IADLDQALR 388
IAD +QAL
Sbjct: 387 IADFEQALD 395
|
Length = 397 |
| >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 4e-68
Identities = 138/423 (32%), Positives = 206/423 (48%), Gaps = 45/423 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRR 62
FAT AVH G++PD + PI +T+F N F Y+R NPT
Sbjct: 8 FATLAVHAGAQPDP-TTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNA 66
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE +A+LE L +SG A V H LL GD I+ +YGG+ F
Sbjct: 67 VLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF 126
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G +V + D + + I P TK ++IE+ NP TV D+ AI+ V + + L++DN
Sbjct: 127 GWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRA-GLPLIVDN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV---TNDDSLQARLKFLQN---- 234
T + Y + + G DIV++SLTK++ GH + + G V T D S + L
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245
Query: 235 -------------------------SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269
+G SPF+ +L+ G++TLP R++ H ++ V
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305
Query: 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWS--GTSGMLSFYVNGGAEETRIFLESLLI 327
A++L+ HP V V + GLP P H LA+ ++S G + +F + GG E + SL +
Sbjct: 306 AEWLKGHPKVSWVNYAGLPDDPYHALAQ-KYSPKGAGAVFTFGLKGGYEAGVKLVSSLKL 364
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
F ++G SL PA TH+ + E + A G ++VRLS+G+E D+IADL+QAL
Sbjct: 365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLEQAL 424
Query: 388 RKA 390
KA
Sbjct: 425 AKA 427
|
Length = 427 |
| >gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 9e-65
Identities = 136/423 (32%), Positives = 202/423 (47%), Gaps = 49/423 (11%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE-------YSRSNNPTRR 62
F T+++H G D S +P I +T++ ++ Q F YSR NPT
Sbjct: 14 FETRSIHAGQSVDSDTSARNLP-IYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVE 72
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE IASLE H + ++SG A T A+ +L AGDHI++ +YGGT F ++
Sbjct: 73 ALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL 132
Query: 122 GLEVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV FV + E+ ++PNTK + E NP V D+ A++ V ++ + L++D
Sbjct: 133 GIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRN-QVPLIVD 191
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGA---------TVTNDD-------- 223
NT TA + L G D+V+ SLTK+ G+ + G TV D
Sbjct: 192 NTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFV 251
Query: 224 -------------------SLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHER 264
L+AR L+++ G SPF+ W+ +GL TL RL+ H
Sbjct: 252 TPDPAYHGLKYADLGAPAFGLKARAGLLRDT-GATLSPFNAWVTAQGLDTLSLRLERHNE 310
Query: 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELA-KSQWSGTSGMLSFYVNGGAEETRIFLE 323
+I+VA+FL +H V V GL P + K T +LSF + GG +E F++
Sbjct: 311 NAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFID 370
Query: 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383
+L + ++G + SL PA TH + GIT VRLSVG+E D+IADL
Sbjct: 371 ALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGIEDIDDIIADL 430
Query: 384 DQA 386
+
Sbjct: 431 EGG 433
|
Length = 437 |
| >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 6e-60
Identities = 125/393 (31%), Positives = 196/393 (49%), Gaps = 29/393 (7%)
Query: 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFE--------YSRSNNPTRR 62
ATK V G + +W + PP+ ++T +T + + Y R PT
Sbjct: 6 ATKIVSAGRD-KKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHF 64
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+ I LE Y SG A++ A+ L AGDH++ D Y T ++
Sbjct: 65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGF 124
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+E + D E + + I+PNTK++++E+P + M V DV +S + +H DI+++LDN
Sbjct: 125 GIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEH-DIVVMLDN 183
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND---DSLQARLKFLQNS--M 236
T+ + + GVDI + + TKY+ GHSDV++G N+ D L+ ++S M
Sbjct: 184 TWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLR------EHSYLM 237
Query: 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
G SP D +L RGL+TL RL +HE+ +++VA +L + P V V HP + P HE
Sbjct: 238 GQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFF 297
Query: 297 KSQWSGTSGMLSFYVN-GGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK- 354
K +SG++G+ SF + G + +E + F+ S GG ESL + I K
Sbjct: 298 KRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI-----LGVFGINKL 352
Query: 355 ETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
T + L+RL +G+E DLIADL+
Sbjct: 353 RTATNWDFSKPLIRLHIGLEDVDDLIADLEAGF 385
|
Length = 394 |
| >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 1e-59
Identities = 120/360 (33%), Positives = 187/360 (51%), Gaps = 19/360 (5%)
Query: 40 KQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGD 98
K T + Y R T +L+ + LE Y G AV A+ + GD
Sbjct: 43 KHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGD 102
Query: 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158
H++ Y T + +++ K+G+ + D ++ K I+PNTK+V++E+P + M
Sbjct: 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITME 162
Query: 159 VFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGA 217
V DV AI A V+ +PD ++++DNT+ K+L +G+DI + + TKY+ GHSD ++G
Sbjct: 163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT 222
Query: 218 TVTNDDSLQARL--KFLQNS--MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFL 273
V N AR + +NS MG + ++ +RGL+TL RL++HE S++VA++L
Sbjct: 223 AVAN-----ARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWL 277
Query: 274 ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCA 331
HP V V HP LP HE K ++G+SG+ SF + E+ +L++ +F A
Sbjct: 278 AEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMA 337
Query: 332 ESLGGIESL--ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
S GG ESL A+ P E+ P D T L+RL +G+E DLIADL +
Sbjct: 338 YSWGGFESLILANQPEEIAAIR-PAGEVD---FTGTLIRLHIGLEDVDDLIADLAAGFAR 393
|
Length = 395 |
| >gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (472), Expect = 1e-54
Identities = 120/398 (30%), Positives = 205/398 (51%), Gaps = 44/398 (11%)
Query: 32 PIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL 84
P+ STT+K +T +G+ Y+R NPT E+ +A LE + +SG
Sbjct: 27 PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86
Query: 85 GAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-KIENLIKYIKP 142
A+ AV ++ S+GDH++ VYGGT+ F K+G++V F + + ++
Sbjct: 87 AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146
Query: 143 NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYS 202
TK+V+ E+ NP M V + K S K+ ++ ++DNT T Y ++ G +I+++S
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKEL-EVPFIVDNTLATPYLCQAFEHGANIIVHS 205
Query: 203 LTKYMNGHSDVVMGATV-------TN---------DDS----------------LQARLK 230
TKY++GH+ + G + TN D S ++AR++
Sbjct: 206 TTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ 265
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L++ G SPF+ ++ GL+TL R++ H ++ VAK+L H ++ V +PGL S+
Sbjct: 266 LLRD-YGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSN 324
Query: 291 PNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTH 349
N+ LA+ G SG+L+F + GG E + F+ ++ + + + PA TH
Sbjct: 325 ENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTH 384
Query: 350 KSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
+ + E + G+T +L+RLSVG+E +D+IADL+ AL
Sbjct: 385 RQLSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAAL 422
|
Length = 432 |
| >gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-45
Identities = 103/345 (29%), Positives = 181/345 (52%), Gaps = 17/345 (4%)
Query: 47 PPQGFE-YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGD 104
P + F YSR NPT NL R +A+LE + C +SG+ A+++V L S+G H+++ +
Sbjct: 63 PDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASN 122
Query: 105 DVYGGTYRYFAQVAPKI-GLEVDFVDLRKIENLIKYIKPN-TKMVWIENPTNPLMTVFDV 162
+YGGT+ A P+ + FVD+ +E + K + P TK+++ E+ +NP +TV D+
Sbjct: 123 TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADI 182
Query: 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222
++ + + + +V+DNTF G D+V++S++K+++G +D++ GA
Sbjct: 183 PELARIAHEK-GVTVVVDNTF-APMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 240
Query: 223 DSLQARLKFLQNS---MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCV 279
+ + + + + +G +P + ++ L L R+KEH R ++E AK ++
Sbjct: 241 ELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGL- 299
Query: 280 KGVLHPGLPSHPNHELAKSQWS---GTSGMLSFYVNGGAEETRI--FLESLLIFR-CAES 333
V++PGL HP H L KS + G G+L ++ R+ +L++ F A S
Sbjct: 300 -KVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVS 358
Query: 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378
LG E+L T + E + A GI+ LVR+SVG G +
Sbjct: 359 LGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLE 403
|
Length = 418 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 17/161 (10%)
Query: 63 NLERCIASLEE--AKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVA- 118
LE +A L + + SG GA A LL GD +I + +G Y A++A
Sbjct: 4 ELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAG 63
Query: 119 ------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
P +D+ +E L KPN ++ I T + +K I + K++
Sbjct: 64 AKPVPVPVDDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPLKEIRKIAKEY 121
Query: 173 PDILLVLDNTFLTAYYQKSLPW----GVDIVLYSLTKYMNG 209
ILL++D G D+V +SL K + G
Sbjct: 122 -GILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 33/225 (14%)
Query: 64 LERCIASLEEAKHGLCYSS-----GLGAVTAVTHLLSA----GDHIISGDDVYGGTYRYF 114
L IA + G+ GA A++ LL A GD ++ D Y G Y
Sbjct: 41 LREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPG-YEAA 99
Query: 115 AQVAPKIGLEVDFVDLRK-------IENLIKYIKPNTKMVWIENPTNPLMTVFD---VKA 164
A++A G EV V L + +E L P TK++++ NP NP V ++
Sbjct: 100 ARLA---GAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE 156
Query: 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLP--------WGVDIVLYSLTKYMNGHSDVVMG 216
++ + K+H IL++ D + Y P + IVL S +K G + +G
Sbjct: 157 LAELAKKH-GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTF-GLPGLRIG 214
Query: 217 ATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKE 261
+ + L RLK L PS L L+E
Sbjct: 215 YLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE 259
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 51/244 (20%), Positives = 84/244 (34%), Gaps = 46/244 (18%)
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYR 112
Y R + E I AK L A LL+ GD ++ D Y +Y
Sbjct: 78 YKRRYG-LDVDPEEEIIVTAGAKEAL--------FLAFLALLNPGDEVLIPDPGYP-SYE 127
Query: 113 YFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161
++A G + V L +E+L I P TK + + +P NP V+
Sbjct: 128 AAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEE 184
Query: 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSLP---------WGVDIVLYSLTKYMNGHSD 212
+KAI + ++H DI+++ D + Y + I + S +K
Sbjct: 185 LKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG---- 239
Query: 213 VVM-----GATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
M G V + L A L+ L++ + + L P + E
Sbjct: 240 --MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMRE 296
Query: 268 EVAK 271
E +
Sbjct: 297 EYRE 300
|
Length = 393 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-07
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 29/118 (24%)
Query: 94 LSAGDHIISGDDVYG-GTYRYFAQ-------VAPKIGLEVDFVDLRKIENLIKYIKPNTK 145
L GD +I + +G Y AQ P D ++ ++ + P T+
Sbjct: 105 LGPGDEVIYSE--HGFAVYPIAAQAVGAKPVEVPAKDYGHD------LDAMLAAVTPRTR 156
Query: 146 MVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAY--------YQKSLPW 194
+V+I NP NP T + + + PD+L+VLD AY Y+ L
Sbjct: 157 LVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDE----AYAEYVRRKDYEDGLEL 210
|
Length = 367 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTK 145
L+ GDH+IS VY TY+ + +G EVD+ L+ ++ L + ++PNTK
Sbjct: 100 LVEPGDHVIS---VYP-TYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTK 155
Query: 146 MVWIENPTNPLMTVFDVKAISAVVK 170
++ I N NP + D + +V+
Sbjct: 156 LICINNANNPTGALMDRAYLEEIVE 180
|
Length = 373 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
L GD I+ D + + ++A + G +V + L ++ L K I P TK+
Sbjct: 106 RSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKL 165
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP--------WGVDI 198
V + + +N TV VK I+ + +H L+++D Q + G D
Sbjct: 166 VALSHVSNVTGTVNPVKEIAELAHEH-GALVLVD------AAQ-AAGHLPIDVQELGCDF 217
Query: 199 VLYSLTKYMNG 209
+ +S K++ G
Sbjct: 218 LAFSGHKWLLG 228
|
Length = 405 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 38/178 (21%)
Query: 64 LERCIASL--------EEAKHGLCYSSGLGAVTAVTHLLS---AGDHIISGDDVY----- 107
L +A + + + + SG GA L GD I+ Y
Sbjct: 46 LREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIR 105
Query: 108 -----GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF-- 160
GG + + +DF L E +K K+V +P NP TV
Sbjct: 106 IFRLAGGEVVRYPLYSSN-DFHLDFDAL---EAALKEATEGNKVVLHTSPHNPTGTVATL 161
Query: 161 -DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGV---------DIVLYSLTKYMN 208
+++ + + K+H +ILL++D + + +V+ S +K
Sbjct: 162 EELEKLLDLAKEH-NILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFG 218
|
Length = 357 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 109 GTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
Y AQ+A G EV V L++ ++ ++ I+ TK+V++ NP NP T+ +
Sbjct: 110 SMYEIAAQLA---GAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREE 166
Query: 165 ISAVVKQHP-DILLVLDNTFLTAYY----QKSLPWGVD----IVLYSLTK 205
+ A+++ P L+V+D AY + SL IVL + +K
Sbjct: 167 LRALLEALPEGGLVVIDE----AYIEFSPESSLELLKYPPNLIVLRTFSK 212
|
Length = 356 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVW 148
LL+ G + + + + YR+ A + G EV V L+ +E ++K I TK+VW
Sbjct: 101 LLNPGTNTVMAEPTFS-QYRHNAIIE---GAEVREVPLKDGGHDLEAMLKAIDEQTKIVW 156
Query: 149 IENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQ 189
I NP NP T + + + + ++ +L+VLD AYY+
Sbjct: 157 ICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDE----AYYE 194
|
Length = 359 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 81 SSGLGAVTAVTHLLSAGDH---IISGDDVYGGTYRYFAQVAPKIGLEVDF--------VD 129
S L AV L+ GD +++G +G FA++A + G EV VD
Sbjct: 64 SGTLAMEAAVASLVEPGDKVLVVVNG--KFG---ERFAEIAERYGAEVVVLEVEWGEAVD 118
Query: 130 LRKIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLT 185
++E + P+ K V + E T L +K I+ K+H LL++D + L
Sbjct: 119 PEEVEEALDK-DPDIKAVAVVHNETSTGVLN---PLKEIAKAAKEH-GALLIVDAVSSLG 173
Query: 186 AYYQKSLPWGVDIVL 200
K WG+D+ +
Sbjct: 174 GEPLKVDEWGIDVAI 188
|
Length = 383 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 78 LCYSSGLGAVTAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK--- 132
LC SGL V + +L AGD+I++ G T+ + A G EV V L
Sbjct: 85 LC-GSGLDEVIQIISRAVLKAGDNIVTA----GATFPQYRHHAIIEGCEVKEVALNNGVY 139
Query: 133 -IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQK 190
++ + + +TK+VWI NP NP T + + ++ ++ + L+V+D + K
Sbjct: 140 DLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAK 199
Query: 191 SLP 193
P
Sbjct: 200 DFP 202
|
Length = 366 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPN 143
++ L GD I+ + + + ++A + G V + + ++ L K + P
Sbjct: 80 SLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLDALEKLLTPR 139
Query: 144 TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
TK+V I + +N TV V+ I + ++ L+V+D
Sbjct: 140 TKLVAITHVSNVTGTVNPVEEIGKLAHEY-GALVVVD 175
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV--------DLR 131
SG GA+ A+++LL GD ++ G V G +A +A + G +VD V
Sbjct: 57 GSGTGAMEAALSNLLEPGDKVLVG--VNGVFGDRWADMAERYGADVDVVEKPWGEAVSPE 114
Query: 132 KIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+I ++ + + K V + E T L ++ I A+ K+H +L+V + L
Sbjct: 115 EIAEALE--QHDIKAVTLTHNETSTGVLN---PLEGIGALAKKHDALLIVDAVSSLGGEP 169
Query: 189 QKSLPWGVDIVL 200
+ WGVD+
Sbjct: 170 FRMDEWGVDVAY 181
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVA-PKI-----GLEVDFVDLRKIENLIKYIKP 142
A+ + GD I+ + Y Y FA A KI +E F L E + K I P
Sbjct: 104 AMMAICDPGDEILVPEPFYA-NYNGFATSAGVKIVPVTTKIEEGFH-LPSKEEIEKLITP 161
Query: 143 NTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
TK + I NP NP V+ +++ ++ + K+H D+ L+ D
Sbjct: 162 KTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISD 201
|
Length = 397 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
T+ Y+ A G + + + +++++ I TK++++ P NP + +
Sbjct: 120 TFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEED 179
Query: 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGAT 218
I +++ D L+ +D AY V+ Y T + ++++G T
Sbjct: 180 IRKILES-TDALVFVDE----AY--------VEFAEYDYTPLALEYDNLIIGRT 220
|
Length = 361 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 107 YGGTYRYFAQVAPKIGLEV-------DF-VDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158
+G TY +A A + V D+ + L IE L K+V+I NP NP T
Sbjct: 108 FGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQL-----DGAKLVFICNPNNPTGT 162
Query: 159 VFDVKAISAVVKQHPDILLVLD 180
V D I +++ PD ++V+D
Sbjct: 163 VIDRADIEQLIEMTPDAIVVVD 184
|
Length = 354 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 38/207 (18%), Positives = 67/207 (32%), Gaps = 59/207 (28%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVY-------- 107
+ LE +A A+ L +SSG A + ++ LL GD I S D++
Sbjct: 82 TSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFS-DELNHASIIDGI 140
Query: 108 ---GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161
R F DL +E L++ EN + V +
Sbjct: 141 RLSRAEVRRFKH-----------NDLDHLEALLE--------EARENGARRKLIVTEGVF 181
Query: 162 --------VKAISAVVKQHPDILLVLDNTFLT----------AYYQKSLPWGVDIVLYSL 203
+ + + +++ LL +D A + P VDI++ +L
Sbjct: 182 SMDGDIAPLPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTL 240
Query: 204 TKYMNGHSDVVMGATVTNDDSLQARLK 230
K + G + +L L+
Sbjct: 241 GKALGS-----SGGYIAGSAALIDYLR 262
|
Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 100.0 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 100.0 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 100.0 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 100.0 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 100.0 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 100.0 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 100.0 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 100.0 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 100.0 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| KOG0053|consensus | 409 | 100.0 | ||
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 100.0 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 100.0 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PLN02509 | 464 | cystathionine beta-lyase | 100.0 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 100.0 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 100.0 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 100.0 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 100.0 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 100.0 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 100.0 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 100.0 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 100.0 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 100.0 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 100.0 | |
| PLN02242 | 418 | methionine gamma-lyase | 100.0 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.98 | |
| PLN02656 | 409 | tyrosine transaminase | 99.98 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.98 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.98 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.98 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.98 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.98 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.98 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.98 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.98 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.97 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.97 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.97 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.97 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.97 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.97 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.97 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.97 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.97 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.97 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.97 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.97 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.97 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.97 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.97 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.97 | |
| PLN02231 | 534 | alanine transaminase | 99.96 | |
| KOG0257|consensus | 420 | 99.96 | ||
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| PLN02368 | 407 | alanine transaminase | 99.96 | |
| PLN02721 | 353 | threonine aldolase | 99.96 | |
| KOG0259|consensus | 447 | 99.96 | ||
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.96 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.95 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.95 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.95 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.95 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.95 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.95 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| KOG0633|consensus | 375 | 99.95 | ||
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.95 | |
| PLN02397 | 423 | aspartate transaminase | 99.95 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.95 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.94 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.94 | |
| PLN02651 | 364 | cysteine desulfurase | 99.94 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.94 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.94 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.94 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.93 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.93 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.93 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.93 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.93 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.93 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.93 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.93 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| KOG0256|consensus | 471 | 99.92 | ||
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.92 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.92 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.92 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.92 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.91 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.91 | |
| KOG1549|consensus | 428 | 99.91 | ||
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.91 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.91 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.91 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.9 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.9 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.9 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.9 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.89 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.89 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.89 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.89 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.89 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.89 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.88 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.88 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.88 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.88 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| KOG0634|consensus | 472 | 99.87 | ||
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.87 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.87 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.86 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.86 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.86 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.85 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.84 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.83 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.83 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.82 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.81 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.81 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.81 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.81 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.8 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.8 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.79 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.79 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.78 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.78 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.78 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.78 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.78 | |
| KOG1368|consensus | 384 | 99.77 | ||
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.77 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.77 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.76 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.75 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.75 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.73 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.72 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.72 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.71 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.71 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.7 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.7 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.69 | |
| KOG1360|consensus | 570 | 99.69 | ||
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.68 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.68 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.67 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.65 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.65 | |
| KOG1359|consensus | 417 | 99.65 | ||
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.64 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.64 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.63 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.63 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.63 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.63 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.63 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| KOG2862|consensus | 385 | 99.62 | ||
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.61 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.61 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.61 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.61 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.61 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.6 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.6 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.6 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.6 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.59 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.59 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.58 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.58 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.57 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.56 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.56 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.54 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.54 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.53 | |
| KOG1357|consensus | 519 | 99.52 | ||
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.52 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.52 | |
| KOG0258|consensus | 475 | 99.52 | ||
| KOG1358|consensus | 467 | 99.51 | ||
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.5 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.5 | |
| PLN02263 | 470 | serine decarboxylase | 99.49 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.49 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.49 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.48 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.47 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.47 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.47 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.47 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.47 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.47 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.45 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.44 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.44 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.43 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.43 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.43 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.43 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.43 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.42 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.42 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.41 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.41 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.4 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.39 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.39 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.39 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.39 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.37 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.37 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.36 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.36 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.35 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.35 | |
| KOG1404|consensus | 442 | 99.33 | ||
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.33 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.33 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.32 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.32 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.32 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.31 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.3 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.3 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.29 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.28 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.27 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.27 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.25 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.2 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.19 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.19 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.18 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.17 | |
| KOG1402|consensus | 427 | 99.13 | ||
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.1 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.1 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.08 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.02 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.01 | |
| KOG1401|consensus | 433 | 98.88 | ||
| KOG1411|consensus | 427 | 98.86 | ||
| KOG2467|consensus | 477 | 98.67 | ||
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.66 | |
| KOG1383|consensus | 491 | 98.65 | ||
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.64 | |
| KOG1412|consensus | 410 | 98.55 | ||
| KOG0628|consensus | 511 | 98.54 | ||
| KOG0629|consensus | 510 | 98.38 | ||
| KOG3846|consensus | 465 | 98.32 | ||
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.25 | |
| KOG1403|consensus | 452 | 98.19 | ||
| KOG1405|consensus | 484 | 97.99 | ||
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.9 | |
| KOG2040|consensus | 1001 | 97.79 | ||
| KOG2040|consensus | 1001 | 97.75 | ||
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.46 | |
| KOG2790|consensus | 370 | 94.77 | ||
| KOG3843|consensus | 432 | 91.71 | ||
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 82.52 |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-60 Score=443.34 Aligned_cols=382 Identities=40% Similarity=0.644 Sum_probs=348.9
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
++++|.++|+|..+++.. ++..+|++.+++|....... ...+.|+|+++|....|+++||++.|.+..+++++|++++
T Consensus 4 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~-~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai 81 (388)
T PRK08861 4 RKPATIAVRTGIESDSQY-HAVVPPIYLSTNYGFPAFGE-VPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSAL 81 (388)
T ss_pred CCcccceeECCCCCCCCC-CCccCCcccCcceEeCCcCc-cCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHH
Confidence 368899999997665433 57888999999997665433 2358899999999999999999999987777777777788
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++.+++++||+|+++.|+|++++..+.......|++++.++..|++++++++.+++++|++++|+||||.++|+++|.
T Consensus 82 ~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~ 161 (388)
T PRK08861 82 NLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELC 161 (388)
T ss_pred HHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHH
Confidence 7777889999999999999998776666666778899999988899999999988999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++|+++ |+++|+|++|..+..+.|++.++|+++.|+||+++|+.++++|+++++++++.++++..+...|...+|++++
T Consensus 162 ~la~~~-gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~ 240 (388)
T PRK08861 162 QKAKAV-GALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSY 240 (388)
T ss_pred HHHHHc-CCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHH
Confidence 999999 9999999999988878888889999999999999989999999999876788888888888889999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
+++++++++..|++++.+++..+++||+.+|.|.+|.||+++++++|.++.+++.++|++++|.++++.+...+|+++|+
T Consensus 241 l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~ 320 (388)
T PRK08861 241 MTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA 320 (388)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999766888999999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.+..+.++|+.+|+..+|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||+++++
T Consensus 321 l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 321 LFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred cceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999899989999999999999999999999999999998875
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=429.94 Aligned_cols=383 Identities=50% Similarity=0.801 Sum_probs=356.1
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC-------CCCccccCCCCchHHHHHHHHHHHhCCCcE
Q psy12791 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRRNLERCIASLEEAKHG 77 (393)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~~~lr~~la~~~~~~~~ 77 (393)
.+..++.|.++|+|..+++.. ++..+|++.+++|...-.+.. ...+.|+|+.+|....|++++|++.|.+++
T Consensus 3 ~~~~~~~T~~v~~g~~~~~~~-gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~ 81 (396)
T COG0626 3 KAKLSLTTRLVHAGRRPDDLT-GAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDA 81 (396)
T ss_pred ccccccceeeEEcccccccCC-CcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcE
Confidence 345678999999999886665 589999999999888654421 346889999999999999999999999999
Q ss_pred EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcC-CCCcEEEEecCCCC
Q psy12791 78 LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIENPTNP 155 (393)
Q Consensus 78 i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~-~~~~~v~l~~p~np 155 (393)
+.++||+.|| .+++.++++||+|++++..|++++..+....+++|+++.+++..+.+++.+++. ++|++||+++|.||
T Consensus 82 ~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP 161 (396)
T COG0626 82 FAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNP 161 (396)
T ss_pred EEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCc
Confidence 9999999999 778999999999999999999999999999999999999999888777777777 58999999999999
Q ss_pred cccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-
Q psy12791 156 LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN- 234 (393)
Q Consensus 156 tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~- 234 (393)
+..+.|+++|.++|+++ |+++|+|++++.++++.|+..|+||++.|.+|+++|...+.+|.++++++++.+.+.....
T Consensus 162 ~l~v~DI~~i~~~A~~~-g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~ 240 (396)
T COG0626 162 LLEVPDIPAIARLAKAY-GALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA 240 (396)
T ss_pred ccccccHHHHHHHHHhc-CCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999999999999999999999999999999999888777788888765555
Q ss_pred hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
.+|..++|+++++++++++++..|++++.+|++++++||+.+|.+++|.||+++++++|+++.|++.++|++++|.+++.
T Consensus 241 ~~G~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~ 320 (396)
T COG0626 241 NTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE 320 (396)
T ss_pred hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999988999999999655
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+.+|++.|+.+..+.|+|+++|++.+|+.++|..++.+.....|+.++.||||+|.|++++++++|.+||+++
T Consensus 321 -~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 321 -EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA 395 (396)
T ss_pred -HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=432.56 Aligned_cols=382 Identities=39% Similarity=0.645 Sum_probs=346.6
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
+++.|.++|.|..++... ++..+|+..+++|.....+. ...+.|+||++|....|+++||+++|.++.+++++|++++
T Consensus 3 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~s~~~~~~~~~-~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai 80 (386)
T PRK08045 3 RKQATIAVRSGLNDDEQY-GCVVPPIHLSSTYNFTGFNE-PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAI 80 (386)
T ss_pred CCcccceeEcCCCCCCCC-CCccCCccCCcceecCCccc-cCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHH
Confidence 468899999996554333 57889999999998765443 2358899999999999999999999988888888888888
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++..++++||+|++++|+|++++..+...+...|+++..++..|++++++.+.+++++|++++|+||||.++|+++|.
T Consensus 81 ~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~ 160 (386)
T PRK08045 81 HLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC 160 (386)
T ss_pred HHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHH
Confidence 7777889999999999999998777777766677778888887789999999988999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++|+++ |+++|+|++|..+....++..++|+++.|++|+++|++++++|+++++++++.++++......+...++.+++
T Consensus 161 ~ia~~~-g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~ 239 (386)
T PRK08045 161 HLAREA-GAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSY 239 (386)
T ss_pred HHHHHc-CCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999 9999999999988777788889999999999999999999999999876889888887888889999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
++.++++++..|++++.+|+..+++||+.+|.+.+|.+|+++++++|.++.+.+.++|++++|.++++.+...+|+++|+
T Consensus 240 l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~ 319 (386)
T PRK08045 240 LLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLS 319 (386)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999767788899999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.+..+.|+|+++|+..+|..++|..+..+.....|++++.||||+|.|+.|+++++|.+||+++.+
T Consensus 320 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANK 385 (386)
T ss_pred ceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999888888999999999999999999999999999998754
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-57 Score=424.69 Aligned_cols=379 Identities=42% Similarity=0.686 Sum_probs=340.4
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
..++|.++|.|..++... .+..+|+..++.+....... ...+.|+||++|...+|++++|++.|.++.+++++|++++
T Consensus 2 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~ss~~~~~~~~~-~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai 79 (382)
T TIGR02080 2 RKQATIAVRSGLNSDTQY-GCVVPPIYLSTTYNFTGFNE-PRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAI 79 (382)
T ss_pred CCcccceeecCCCCCCCC-CCccCCeeCCceeEeCCcCc-cCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHH
Confidence 467899999996654322 47788999988886543222 2346799999999999999999999977777777777788
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++.+++++||+|+++.|+|++++..+...+...|+++..++..|++++++++++++++|++++|+||||.++|+++|.
T Consensus 80 ~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~ 159 (382)
T TIGR02080 80 HLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKIC 159 (382)
T ss_pred HHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHH
Confidence 7777889999999999999998877776666777889998887789999999988999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++|+++ |+++|+|++|..+....++..+.|++++|+||+++|++++++|+++++++++.++++..+...|...++++++
T Consensus 160 ~la~~~-g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~ 238 (382)
T TIGR02080 160 HLAKAV-GAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSY 238 (382)
T ss_pred HHHHHc-CCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHH
Confidence 999999 9999999999987766677778999999999999889999999998877889999988888889999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
+++++++++..|++++.+|+..+.+||+.+|.|.+|.+|+++++++|.++.+.+.|+|++++|.++++.+...+|+++|+
T Consensus 239 l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~ 318 (382)
T TIGR02080 239 LTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLS 318 (382)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999766788899999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.+..+.|+|+++|++++|..++|..++.+.+...|++++.||||+|.|+.|++++++.+||++
T Consensus 319 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 319 LFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRA 381 (382)
T ss_pred cceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999888889999999999999999999999999999975
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=424.08 Aligned_cols=376 Identities=49% Similarity=0.816 Sum_probs=328.2
Q ss_pred cceeeccCCCCCCCCCCCCCCCCccCCeeeeC-------CCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQN-------TPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~-------~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
+|+++|+|..+++...++..+|++.+++|..+ .... ...+.|+|+++|....|+++||++.|.+++++++||
T Consensus 1 ~T~~vh~g~~~~~~~~~~v~~pi~~sstf~~~~~~~~~~~~~~-~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SG 79 (386)
T PF01053_consen 1 ETLLVHAGRDPDEDQTGAVNPPIYQSSTFVFDSAEELDAFAGE-EKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSG 79 (386)
T ss_dssp HHHHHHTTTTGGTSTTTBSS--B---SBBBBSSHHHHHHHTTS-SSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred CcceEeCCCCCCCCCCCCeeCCccccccCcccchHHHHhhcCC-CCCcceeccccccHHHHHHHHHHhhcccceeeccch
Confidence 47889999998752226899999999999987 2222 446999999999999999999999999999999999
Q ss_pred HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCH
Q psy12791 84 LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV 162 (393)
Q Consensus 84 ~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~ 162 (393)
+.|+ .++.+++++||+|+++...|++++..+...+...|+++.+++..|++++++++++++++||++.|.||+..+.|+
T Consensus 80 maAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl 159 (386)
T PF01053_consen 80 MAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDL 159 (386)
T ss_dssp HHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---H
T ss_pred HHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccH
Confidence 9999 888899999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC-cEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecC-hHHHHHHHHHHHhcCCCC
Q psy12791 163 KAISAVVKQHPD-ILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND-DSLQARLKFLQNSMGVVP 240 (393)
Q Consensus 163 ~~l~~l~~~~~~-~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (393)
++|.++|+++ | +++++|++++.++.+.|+..|+|+++.|.+|+++|...+.+|.+++++ +++.++++......|...
T Consensus 160 ~~i~~~a~~~-g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~ 238 (386)
T PF01053_consen 160 EAIAKLAKEH-GDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATL 238 (386)
T ss_dssp HHHHHHHHHT-TT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B-
T ss_pred HHHHHHHHHh-CCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccc
Confidence 9999999999 9 999999999999888999999999999999999999999999999886 688888988888999999
Q ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
++.+++++.++++++..|++++.+|++++++||+.+|.+++|.+|+++++++|.++.+.+.++|++++|.+++..+.+.+
T Consensus 239 ~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~ 318 (386)
T PF01053_consen 239 SPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARR 318 (386)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHH
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999654469999
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
|+++|+.+..+.|+|+.+|++++|..++|..++.+.....|++++.||||+|.|+.++++++|.+||+
T Consensus 319 f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 319 FLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE 386 (386)
T ss_dssp HHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred HHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=421.81 Aligned_cols=382 Identities=41% Similarity=0.665 Sum_probs=344.4
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHH
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA 86 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a 86 (393)
+-++.|.++|+|..++... ++..+|+..++.+....... ...+.|+|+++|...+|++++|+++|.++++++++|+++
T Consensus 10 ~~~~~t~~~~~~~~~~~~~-~~~~~pi~~ss~~~~~~~~~-~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~A 87 (405)
T PRK08776 10 PCSAATAAVRAGIDRDTAY-GAVTPPIVLSSNFSFDGFGN-KRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGA 87 (405)
T ss_pred CcCccchheeCCCCCCCCC-CCccCCEeccceEEeCCCCc-ccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHH
Confidence 3458888999996654332 57788999998876544322 235789999999999999999999999999999999988
Q ss_pred H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHH
Q psy12791 87 V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 87 l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 165 (393)
+ .++.+++++||+|+++.|+|++++..+...++..|++++.++..|++++++.+++++++|++++|+||||.+.++++|
T Consensus 88 i~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I 167 (405)
T PRK08776 88 INLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFV 167 (405)
T ss_pred HHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHH
Confidence 8 777788999999999999999887777777788899999999889999999998889999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
.++|+++ |+++|+|++|..+....++..++|+++.|++|+++|+.++.+|+++++++++.+++.......+...+++++
T Consensus 168 ~~la~~~-gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a 246 (405)
T PRK08776 168 IEAAHKV-GALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDA 246 (405)
T ss_pred HHHHHHc-CCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999 999999999998766677778899999999999987888899999987788888887777777777899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 246 WLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
++..++++++..+++++.+|+..+.++|+.+|.+.+|.+|+++++++|.++.+++.++|++++|.++++.+.+.+|+++|
T Consensus 247 ~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l 326 (405)
T PRK08776 247 FLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGL 326 (405)
T ss_pred HHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999976788889999999
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+..+.++|+.+|++++|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||+++.
T Consensus 327 ~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~~ 392 (405)
T PRK08776 327 RYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLARAE 392 (405)
T ss_pred CcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999988888899999999999999999999999999998764
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=419.37 Aligned_cols=380 Identities=33% Similarity=0.580 Sum_probs=340.7
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|+|..+++.. .+..+|++.+++|.....+. -...+.|+|+++|...+|++++|+++|.+++++++
T Consensus 8 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s 86 (398)
T PRK08249 8 GVGTKAVWAGEKEYLPY-GATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAFS 86 (398)
T ss_pred CcccceeeCCCCCCCCC-CCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence 57899999996554322 57789999999997654321 12357899999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
+|++++ .++.+++++||+|+++.++|+++...+...++..|+++++++..|+++++++++++|++|++++|+||||.++
T Consensus 87 sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~ 166 (398)
T PRK08249 87 TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIV 166 (398)
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccC
Confidence 999998 7777889999999999999998877777777889999999998899999999998999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
|+++|.++|+++ |+++|+|++|+.+....+...++|++++|+||+++|+.+..+|+++++ ++++++++..+...+...
T Consensus 167 dl~~I~~la~~~-gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~~~ 244 (398)
T PRK08249 167 DIERLAAAAKKV-GALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGATM 244 (398)
T ss_pred CHHHHHHHHHHc-CCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCCCC
Confidence 999999999999 999999999998776666667899999999999964443345777765 889999888887788899
Q ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
++..++++.++++++..+++++.+++..+.++|+.+|.+.+|.||++++.++|.++.+.+.++|++++|.++++.+.+.+
T Consensus 245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~ 324 (398)
T PRK08249 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKR 324 (398)
T ss_pred CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999767788999
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
|+++|+.+..+.|+|+.+|++++|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||+.+.
T Consensus 325 f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~ 395 (398)
T PRK08249 325 LLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAHLE 395 (398)
T ss_pred HHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=414.68 Aligned_cols=376 Identities=50% Similarity=0.800 Sum_probs=341.8
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHH
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT 88 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~ 88 (393)
++.|.++|+|..++... +++.+|++++++|....... ...+.|+|+++|...+|++++|+++|.+.+++++||+.++.
T Consensus 2 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~ 79 (377)
T PRK07671 2 RAKTKLIHGGIIGDPST-GAVSVPIYQVSTYKQEAVGK-HQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAIT 79 (377)
T ss_pred CcccceeeCCCCCCCCC-CCccCCccCCcceecCCCCC-cCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHH
Confidence 45788999996654333 47788999999997655433 34578999999999999999999999999999999998874
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
++..++++||+|++++|+|++++..+...++..|++++.++..|+++++++++++|++|++++|+||||.+.|+++|.++
T Consensus 80 ~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~l 159 (377)
T PRK07671 80 AVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTI 159 (377)
T ss_pred HHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHH
Confidence 45567899999999999999887777777788999999999889999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
|+++ |+++|+|++|..+....+...+.|+++.|+||+++|+.+...|+++++++++.++++..+...+...++.+++++
T Consensus 160 a~~~-g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~ 238 (377)
T PRK07671 160 AKEK-GLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLL 238 (377)
T ss_pred HHHc-CCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 9999 999999999988766677778899999999999987877778988887788999998888888999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
+++++++..|++++.+|+..+.+||+.+|.+.++.+|++++.+.+.++.+++.++|++++|.+ ++.+.+.+|+++++.+
T Consensus 239 ~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~-~~~~~~~~f~~~l~l~ 317 (377)
T PRK07671 239 LRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV-GSEETANKVLERLQYF 317 (377)
T ss_pred HcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe-CCHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 6888999999999999
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
..+.|+|+.+|++++|..++|..++.+....+|++++.||||+|.|+.++++++|.+||+
T Consensus 318 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~ 377 (377)
T PRK07671 318 TLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA 377 (377)
T ss_pred eEccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 999999999999999999999999988888999999999999999999999999999984
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=420.98 Aligned_cols=379 Identities=34% Similarity=0.558 Sum_probs=334.1
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-----------------CCCCccccCCCCchHHHHHHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-----------------PPQGFEYSRSNNPTRRNLERCIAS 70 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------~~~~~~y~~~~~~~~~~lr~~la~ 70 (393)
.++.|.++|.|..+.... ++..+|++.+++|.....+. ....+.|+||++|....|+++||+
T Consensus 16 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~ 94 (427)
T PRK07049 16 LHPETQMLNYGYDPELSE-GAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV 94 (427)
T ss_pred CCcccceeeCCCCCCCCC-CCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHH
Confidence 457889999996543322 47789999999997644221 022477999999999999999999
Q ss_pred HhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-CCHHHHHhhcC-----CC
Q psy12791 71 LEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-RKIENLIKYIK-----PN 143 (393)
Q Consensus 71 ~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-~d~~~l~~~l~-----~~ 143 (393)
++|.++++++++|++|+ .++.+++++||+|+++.|.|+.+.......++..|++++.++. .|++++++.+. ++
T Consensus 95 leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~ 174 (427)
T PRK07049 95 YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGR 174 (427)
T ss_pred HhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCC
Confidence 99999999999999998 7788899999999999999998655555556778998666653 46777776553 46
Q ss_pred CcEEEEecCCCCcccccCHHHHHHHHHh------CCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEE
Q psy12791 144 TKMVWIENPTNPLMTVFDVKAISAVVKQ------HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGA 217 (393)
Q Consensus 144 ~~~v~l~~p~nptG~~~~~~~l~~l~~~------~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~ 217 (393)
+++|++++|+||||.++|+++|.++++. + ++++|+||+|..+....++..++|+++.|+||+++|++|+|+||
T Consensus 175 tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~ 253 (427)
T PRK07049 175 VSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGA 253 (427)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEE
Confidence 9999999999999999999999999988 7 89999999998877667777789999999999997799999999
Q ss_pred EEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCC--CCCcchHH
Q psy12791 218 TVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGL--PSHPNHEL 295 (393)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l--~~~~~~~~ 295 (393)
++++ +++.+.++..+..++...++..++++.+.++++..|++++.+++..+.++|+.+|.+.+|.+|++ ++.+.+.+
T Consensus 254 vv~~-~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~ 332 (427)
T PRK07049 254 VLGR-KALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAV 332 (427)
T ss_pred EECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHH
Confidence 9987 88999998888888999999999999999999999999999999999999999999999999985 89999999
Q ss_pred HhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC
Q psy12791 296 AKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG 375 (393)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~ 375 (393)
+.+.+.++|++++|.++++.+.+.+|+++++.+..+.|+|+++|++++|..++|..++.+.....|+.++.||||+|.|+
T Consensus 333 ~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~ 412 (427)
T PRK07049 333 YKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEH 412 (427)
T ss_pred HHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCC
Confidence 99999999999999997677889999999999999999999999999999999999999888899999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy12791 376 YTDLIADLDQALRK 389 (393)
Q Consensus 376 ~~~~i~~l~~al~~ 389 (393)
.|+++++|.+||++
T Consensus 413 ~~dl~~dl~~al~~ 426 (427)
T PRK07049 413 PDDLIADLAQALDA 426 (427)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999974
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=415.40 Aligned_cols=382 Identities=46% Similarity=0.751 Sum_probs=342.5
Q ss_pred CCCCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 2 SFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
+---++.++.|.++|+|..++... ++..+|+.++++|..+..+.....+.|+|+++|...+|++++|+++|.+.+++++
T Consensus 5 ~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~ 83 (388)
T PRK07811 5 SDHHANQGFATRAIHAGYEPDPAT-GAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFS 83 (388)
T ss_pred hcccCCCCcccceeeCCCCCCCCC-CCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeC
Confidence 333455668899999997654433 4778899999999877655433457899999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
+|+.++ .++.+++++||+|++++|+|++++..+...++..|++++.++..|++++++.+.+++++|++++|+||||.+.
T Consensus 84 sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~ 163 (388)
T PRK07811 84 SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSIT 163 (388)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceec
Confidence 999888 7777889999999999999998877777777788999999998899999999998999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
++++|.++|+++ |+++|+|++|+.+....++..+.|+++.|++|+++|+.+.++||++++++++.++++..+...+...
T Consensus 164 dl~~I~~la~~~-gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~ 242 (388)
T PRK07811 164 DIAALAELAHDA-GAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVP 242 (388)
T ss_pred CHHHHHHHHHHc-CCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 999999999999 9999999999987766777778999999999999877778899999877888888887777778888
Q ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
++.+++++.++++++..|+++..+|+..+.++|+.+|.+..|.+|++++++.|.++.+.+.|+|++++|.++++.+.+.+
T Consensus 243 s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~ 322 (388)
T PRK07811 243 GPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARD 322 (388)
T ss_pred CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999767888999
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
|+++++.+..+.++|+++|++++|..+.|..++.+ ..|++++.||||+|.|+.++++++|.+||+
T Consensus 323 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~ 387 (388)
T PRK07811 323 FCARTKVFTLAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALG 387 (388)
T ss_pred HHHhCCcceeeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999998887744 358889999999999999999999999986
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=412.65 Aligned_cols=378 Identities=49% Similarity=0.801 Sum_probs=344.0
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHH
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT 88 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~ 88 (393)
+++|.++|+|..++... ++..+|++++++|....... ...+.|+|+++|....|++++|++.|.+.+++++||++++.
T Consensus 2 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~ 79 (380)
T PRK06176 2 RMQTKLIHGGISEDTTT-GAVSVPIYQTSTYRQDAIGR-PKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIH 79 (380)
T ss_pred CccceeeECCCCCCCCC-CCccCCcccCCceecCCCCC-cCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHH
Confidence 46788899996654433 57889999999997665433 34588999999999999999999999999999999999985
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
+++.++++||+|+++++.|++++..+...++..|+++++++..|++++++++++++++|++++|+||||.+.|+++|.++
T Consensus 80 ~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~l 159 (380)
T PRK06176 80 AVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASV 159 (380)
T ss_pred HHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHH
Confidence 55567899999999999999988888888889999999999989999999999899999999999999999999999999
Q ss_pred HHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
|+++ |+++|+|++|+.++...+...+.|+++.|++|+++|+.+..+|+++++++++.++++..+...|...++.+++++
T Consensus 160 a~~~-gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~ 238 (380)
T PRK06176 160 AKDH-GLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLL 238 (380)
T ss_pred HHHc-CCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999 999999999998777778888999999999999987777789999987678888888888877888899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
.++++++..|++++.+++.++.+||+.+|.+.++.+|++++.+.|.++.+.+.++|++++|.++ +.+.+.+|+++|+.+
T Consensus 239 ~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~~~~~~f~~~l~~~ 317 (380)
T PRK06176 239 QRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLK-NDSEAVAFVESLKLF 317 (380)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999995 578899999999999
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+.++|+++|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 318 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 318 ILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379 (380)
T ss_pred eEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999989899999999999999999999999999999865
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=411.63 Aligned_cols=374 Identities=36% Similarity=0.587 Sum_probs=336.8
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
+|++|.++|.|.+ +.. ++..+|++++++|..... ..+.|+|..+|...+|++++|+++|.+.++++++|++++
T Consensus 1 ~~~~t~~~~~~~~--~~~-~~~~~pi~~~~~~~~~~~----~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai 73 (376)
T PRK06460 1 MKDATRTVREDID--EAT-GAITTPIYQTTAYHYPEG----EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAI 73 (376)
T ss_pred CCcceeeeecCCC--CCC-CCccCCccCCcceeeCCC----CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence 4678999999852 212 467899999999976553 258899999999999999999999999899999999888
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++.+++++||+|+++.+.|++++..+...++..|++++.++.++.+.+++.+.+++++|++++|+||||.++|+++|.
T Consensus 74 ~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~ 153 (376)
T PRK06460 74 STTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELS 153 (376)
T ss_pred HHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHH
Confidence 6777889999999999999998888888888999999999988776666666677899999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++|+++ |+++|+|++|+.+....++..++|++++|+||+++|+.|+|+||++++ +++++.++..+..++...++..++
T Consensus 154 ~la~~~-g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~~~~a~ 231 (376)
T PRK06460 154 KVCKEN-GSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLDPHAAY 231 (376)
T ss_pred HHHHHc-CCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999 999999999987655455556789999999999987778899999987 889999988887788888888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
.++++++.+..+++++.+++..+.++|+++|.+.++.+|++++.++|.++.+.+.++|++++|.++++.+.+.+|+++++
T Consensus 232 ~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~ 311 (376)
T PRK06460 232 LTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLK 311 (376)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999767788999999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+..+.|+|+++|+..+|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 312 ~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 312 LIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL 375 (376)
T ss_pred cceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998999999999999999999999999999999999875
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=411.15 Aligned_cols=377 Identities=32% Similarity=0.514 Sum_probs=331.9
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC--------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG--------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
.++.|.++|.|..++... ++..+|++.+++|..+..+ .....+.|+|+.+|....||+++|++.+.++.++
T Consensus 3 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~ 81 (394)
T PRK09028 3 EKKATKIVSAGRDKKWTK-GVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81 (394)
T ss_pred CCccceeEEcCCCCCCCC-CCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 347789999995443322 4678899999998665432 1112477999999999999999999999888999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+++|+.|+ .++.+++++||+|+++++.|++++..+...++..|+++..++..+.+++++.+.++||+|++++|+||||.
T Consensus 82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~ 161 (394)
T PRK09028 82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITME 161 (394)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCc
Confidence 99999998 77788899999999999999988766666677899999999877888899999989999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
+.|+++|.++|+++ |+++++|++|+.+..+.|+..|+|+++.|.+||++|+.++.+|+++.+ +++.+.++......|.
T Consensus 162 v~dl~~I~~la~~~-g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~ 239 (394)
T PRK09028 162 VQDVPTLSRIAHEH-DIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQ 239 (394)
T ss_pred HHHHHHHHHHHHHc-CCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCC
Confidence 99999999999999 999999999999888889999999999999999999999999987765 7787888777777899
Q ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc-CCHHH
Q psy12791 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN-GGAEE 317 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 317 (393)
..+|.+++++.++++++..|++++.+|+..+++||+++|.|.+|.||++++.++|.++.++++++|++++|.++ ++.+.
T Consensus 240 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~ 319 (394)
T PRK09028 240 CTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKA 319 (394)
T ss_pred CCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 36788
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+|+++++.+..+.|+|+++|++.+|..+.+... ....|..++.||||+|.|+.|+++++|.+||++..
T Consensus 320 ~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~~~ 389 (394)
T PRK09028 320 VTALVEGMQHFKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFERYN 389 (394)
T ss_pred HHHHHHhCCcceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988876654432 22256667899999999999999999999998654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-55 Score=411.90 Aligned_cols=383 Identities=43% Similarity=0.684 Sum_probs=346.7
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
|.+..++.|.++|.|..++... ++..+|+..+.++.....+. ...+.|+|..+|...+|++++|+++|.+++++++||
T Consensus 1 ~~~~~~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG 78 (390)
T PRK08064 1 MAMSYSIDTLLLHNQYKHDKQT-GAVNVPIYHASTFHQFDFDT-FGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASG 78 (390)
T ss_pred CCCCCCcccceeeCCCCCCCCC-CCccCCcccCcceecCcccc-cCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCH
Confidence 3456678899999996654333 57788999999987665444 235779999999999999999999999999999999
Q ss_pred HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCH
Q psy12791 84 LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV 162 (393)
Q Consensus 84 ~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~ 162 (393)
+.++ .++ .++++||+|+++++.|++++..+...++..|++++.++..|++++++.+++++++|++++|+||||.+.|+
T Consensus 79 ~~ai~~~l-~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl 157 (390)
T PRK08064 79 MAAISTAF-LLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDI 157 (390)
T ss_pred HHHHHHHH-HHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccH
Confidence 9998 445 47899999999999999988888788888999999999989999999999899999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCH
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393)
++|.++|+++ |+++|+|++|+.+....+...++|+++.|+||+++|+.|+..|+++++++++.++++..+..++...++
T Consensus 158 ~~I~~la~~~-g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~ 236 (390)
T PRK08064 158 RGVVKLAKAI-GCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGV 236 (390)
T ss_pred HHHHHHHHHc-CCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999 999999999998776667777899999999999988998889998887788999999888888999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
.+++++.++++++..|++++.+++..+.++|+.+|.+.++.+|++++.+.+.++.+++.++|++++|.+. +.+...+|+
T Consensus 237 ~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~-~~~~~~~f~ 315 (390)
T PRK08064 237 QDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ-SEEAVRQFV 315 (390)
T ss_pred HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC-CHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 678899999
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++++.+..+.++|+.+|++++|..+.|...+.+.....|.+++.||+|+|.|++++++++|.+||+++.
T Consensus 316 ~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~~ 384 (390)
T PRK08064 316 SHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYVE 384 (390)
T ss_pred HhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence 999998899999999999999999999999888888889999999999999999999999999999764
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-55 Score=412.05 Aligned_cols=378 Identities=40% Similarity=0.666 Sum_probs=337.4
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|+|..+++.. .+..+|++++++|.....+. -...+.|+||++|...+|++++|+++|.+.+++++
T Consensus 3 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~ 81 (391)
T TIGR01328 3 TFATRAIHAGYPPKDQF-GALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATS 81 (391)
T ss_pred CcccceeeCCccCCCCC-CCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence 46789999996654433 47788999999997654321 12357899999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
||++++ .++.+++++||+|+++.+.|++++..+...+...|+++++++.+|++++++.+++++++|++++|+||+|.+.
T Consensus 82 sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~ 161 (391)
T TIGR01328 82 SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLI 161 (391)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCccc
Confidence 999998 7777888999999999999998888888888899999999999999999999998999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHH--HhcC
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQ--NSMG 237 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~--~~~~ 237 (393)
|+++|.++|+++ |+++|+|++|+.+....+...++|+++.|++|+++ .+|. ++|+++++ ++++++++... ...|
T Consensus 162 dl~~I~~la~~~-gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lg-g~g~~~gG~v~~~-~~li~~l~~~~~~~~~g 238 (391)
T TIGR01328 162 DMERVCRDAHSQ-GVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIG-GHGDVVAGLICGK-AELLQQIRMVGIKDMTG 238 (391)
T ss_pred CHHHHHHHHHHc-CCEEEEECCCchhccCCchhcCCCEEEcccccccc-CCCCceEEEEEcC-HHHHHHHHHHHHHhCCC
Confidence 999999999999 99999999999877667777889999999999995 4554 46887775 88888887543 2346
Q ss_pred CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE 317 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
...++..+++++++++++..+++++.++++.+.++|+.+|.+..+.+|+++++++|.++.+.++++|++++|.++++.+.
T Consensus 239 ~~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 318 (391)
T TIGR01328 239 SVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAG 318 (391)
T ss_pred CCCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999767788
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+|+++++.+..+.++|+++|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 319 ~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 319 AKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDAL 391 (391)
T ss_pred HHHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999998888899999999999999999999999999999864
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-55 Score=412.68 Aligned_cols=388 Identities=39% Similarity=0.625 Sum_probs=346.5
Q ss_pred CCCCCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhC
Q psy12791 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEE 73 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~ 73 (393)
|.-+-|..+++|.++|+|..+++.. ++..+|+..+++|.....+. -...+.|+|+++|...+|++++|+++|
T Consensus 1 ~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g 79 (403)
T PRK07503 1 MRDSHNNTGFSTRAIHHGYDPLDHG-GALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEG 79 (403)
T ss_pred CCcccCCCCccchheeCCCCCCCCC-CCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhC
Confidence 5667788889999999997655433 57889999999997654321 123578999999999999999999999
Q ss_pred CCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecC
Q psy12791 74 AKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENP 152 (393)
Q Consensus 74 ~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p 152 (393)
.+++++++||++++ .++..++++||+|+++.+.|+.++..+...++..|++++.++.+|++++++.++++|++|++++|
T Consensus 80 ~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p 159 (403)
T PRK07503 80 GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETP 159 (403)
T ss_pred CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCC
Confidence 99999999999998 67777899999999999999888777777788899999999999999999999889999999999
Q ss_pred CCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 153 TNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 153 ~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+||||.+.|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||+++|+.++|+|+++.+ ++++++++..
T Consensus 160 ~NPtG~~~di~~I~~la~~~-gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~ 237 (403)
T PRK07503 160 ANPNMRLVDIAAVAEIAHGA-GAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLE 237 (403)
T ss_pred CCCCCeeeCHHHHHHHHHHc-CCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhh
Confidence 99999999999999999999 999999999998776667777899999999999975556889999965 8888888733
Q ss_pred --HHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 233 --QNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
....+..+++.++++++++++++..+++++.+++..+.++|+.+|.+.++.+|+++.++.|.++.+++.++|++++|.
T Consensus 238 ~~~~~~g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~ 317 (403)
T PRK07503 238 GLKDMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFE 317 (403)
T ss_pred hHHhCcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 445678889999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++++.+...+|++.++.+..+.++|+.+|+.++|..+.|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 318 ~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~~ 397 (403)
T PRK07503 318 LKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDAC 397 (403)
T ss_pred ECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 97677888999999999889999999999999999999999998889999999999999999999999999999999876
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 398 ~ 398 (403)
T PRK07503 398 A 398 (403)
T ss_pred H
Confidence 4
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=411.36 Aligned_cols=382 Identities=40% Similarity=0.631 Sum_probs=339.9
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC------C-CCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ------P-PQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~-~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
+.++.|.++|.|..+++.. ++..+|.++++++..+.... . ...+.|+||++|...+|++++|+++|.+++++
T Consensus 6 ~~~~~t~~~~~~~~~~~~~-~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~ 84 (400)
T PRK06234 6 KMGFATKAIHGGHIGDKQF-GSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVV 84 (400)
T ss_pred cCCccchheECCCCCCCCC-CCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEE
Confidence 3457899999996544333 46788999999987654321 1 23467999999999999999999999989999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+++|+.++ .++.+++++||+|+++.|.|+.++..+...++..|+++++++..|++++++++++++++|++++|+||||.
T Consensus 85 ~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~ 164 (400)
T PRK06234 85 AASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLK 164 (400)
T ss_pred EcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCC
Confidence 99999998 77778899999999999999988887877788899999999999999999999989999999999999999
Q ss_pred ccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHH--HH
Q psy12791 159 VFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFL--QN 234 (393)
Q Consensus 159 ~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~--~~ 234 (393)
+.|+++|.++|+++ +++++|+|++|+.+....++..++|+++.|+||+++ .+|. ++||++++ ++++++++.. ..
T Consensus 165 v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~-g~g~~~gG~v~~~-~~~~~~l~~~~~~~ 242 (400)
T PRK06234 165 VTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLN-GHGDVIAGFVVGK-EEFINQVKLFGIKD 242 (400)
T ss_pred cCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeecccccc-CCCCceeEEEEec-HHHHHHHHHHHHHH
Confidence 99999999999996 489999999999887777777789999999999995 5564 46999987 7788877643 34
Q ss_pred hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
..+...++..++++.++++++..+++++.++++++.++|+.+|.+.++.+|++++.+.+.++.+.+.++|++++|.++++
T Consensus 243 ~~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~ 322 (400)
T PRK06234 243 MTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG 322 (400)
T ss_pred hcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...+|+++|+.+.++.++|+++|++.+|..++|..++.+.....|++++.||||+|.|+.+++++++.+||+++.
T Consensus 323 ~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~~ 399 (400)
T PRK06234 323 VEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLIV 399 (400)
T ss_pred HHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999888999999999999999999999999999999763
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-55 Score=406.61 Aligned_cols=378 Identities=33% Similarity=0.556 Sum_probs=334.0
Q ss_pred CCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC---CCCccccCCCCchHHHHHHHHHHHhCCCcEEEecc
Q psy12791 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP---PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS 82 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~ 82 (393)
|+.++.|.++|+|..+++.. ++..+|++++++|.....+.. ...+.|+|..+|..+.|++.++.+.+.+++++++|
T Consensus 9 ~~~~~~t~~~~~~~~~~~~~-~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sS 87 (395)
T PRK05967 9 EKAGINTRLAHDGNDPGDYH-GFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPS 87 (395)
T ss_pred ccCCcccceeeCCCCCCCCC-CCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECc
Confidence 45568899999996654433 578899999999976553321 23578999999999999999999998889999999
Q ss_pred HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|+.|+ .++.+++++||+|+++++.|++++..+...++..|+++.+++..+.+.++++++++||+|++++|+||++.+.|
T Consensus 88 G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~d 167 (395)
T PRK05967 88 GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQD 167 (395)
T ss_pred HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence 99998 77788999999999999999988766667788999999999887778899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
+++|.++|+++ |+++++|++|+.+..+.|+..|+|+++.|.+|+++|..++.+|+++.+ +++.+++.......|...+
T Consensus 168 l~~I~~la~~~-g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~ 245 (395)
T PRK05967 168 IPAIAEAAHRH-GAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAG 245 (395)
T ss_pred HHHHHHHHHHh-CCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCC
Confidence 99999999999 999999999999888899999999999999999999999999988776 7777777766777899999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC----CHHH
Q psy12791 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG----GAEE 317 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 317 (393)
|.++++++++++++..|++++.+|+..+++||+.+|.|.+|.||+++++++|.++.+++.++|++++|.+++ +.+.
T Consensus 246 p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~ 325 (395)
T PRK05967 246 PDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK 325 (395)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999963 3788
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
+.+|+++++.+..+.++|+.+|+.+++ .+.+ +.....|..++.||||+|.|+.|+++++|.+||+++..
T Consensus 326 ~~~f~~~l~l~~~~~slG~~~sLi~~~-~~~~-----~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~~~ 394 (395)
T PRK05967 326 AHAFLDALEIFGLGYSWGGYESLALHV-KLGD-----RTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAASA 394 (395)
T ss_pred HHHHHHhCCcceEccCCCCcceeeeeC-CCCh-----hHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999763 2222 22222466678999999999999999999999997653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=414.65 Aligned_cols=380 Identities=36% Similarity=0.574 Sum_probs=335.5
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|.|..+++.. .+..+|++++++|..+..+. ....+.|+|+++|....|++.+|++.|.+++++++
T Consensus 8 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~al~~~ 86 (431)
T PRK08248 8 RLETLAIHAGQEIDPTT-GSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIGALAVS 86 (431)
T ss_pred CcchhheeCCcCCCCCC-CCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence 46799999996654433 46788999999997644321 12346799999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
||++|+ .++..++++||+|+++.+.|++++..+...++..|+++++++..|++++++++++++++|++++|+||||.++
T Consensus 87 sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~ 166 (431)
T PRK08248 87 SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVL 166 (431)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence 999998 7788889999999999999999888888888999999999999999999999998999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChH-H--------------
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-L-------------- 225 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~-------------- 225 (393)
|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|++|+++ .+|.++|+++..+.+ .
T Consensus 167 di~~I~~la~~~-gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lg-g~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~ 244 (431)
T PRK08248 167 DIEAVAAIAHEH-GIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIG-GHGTSIGGVIVDSGKFDWKGSGKFPGLTEPD 244 (431)
T ss_pred CHHHHHHHHHHc-CCEEEEeCCCCccccCChhHcCCCEEEEcCccccC-CCCCceEEEEEeCCccccccccccccccCCc
Confidence 999999999999 99999999998766667777899999999999994 677777776653221 1
Q ss_pred ------------------HHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCC
Q psy12791 226 ------------------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGL 287 (393)
Q Consensus 226 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l 287 (393)
...........|...+|++++++.++++++..|++++.+++.+++++|+++|.+.++.+|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl 324 (431)
T PRK08248 245 PSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGL 324 (431)
T ss_pred cccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCC
Confidence 11122344567899999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCe
Q psy12791 288 PSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366 (393)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~ 366 (393)
++++.|.++.+.+ .++|++++|.++++.+...+|+++++.+..+.|+|+++|++++|..++|..++.++...+|++++.
T Consensus 325 ~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~l 404 (431)
T PRK08248 325 PSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGL 404 (431)
T ss_pred CCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCe
Confidence 9999999999988 678999999997677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 367 VRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 367 iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
||||+|.|+.|+++++|.+||+++.
T Consensus 405 iRlsvGlEd~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 405 VRLSVGTEAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred EEEEeccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998764
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=395.09 Aligned_cols=389 Identities=49% Similarity=0.772 Sum_probs=358.5
Q ss_pred CCCCCCCC---CccceeeccCCCCCCCCCCCCCCCCc--cCCeeeeC-CCCCCCC---CccccCCCCchHHHHHHHHHHH
Q psy12791 1 MSFLPQDT---AFATKAVHIGSEPDQWRSQCVIPPII--LSTTFKQN-TPGQPPQ---GFEYSRSNNPTRRNLERCIASL 71 (393)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~~~~~-~~~~~~~---~~~y~~~~~~~~~~lr~~la~~ 71 (393)
|+.+..+. +++|.++|.|..++++..++..+|+. .+.+|.+. ....... .+.|+|+++|....+++.++++
T Consensus 10 ~~~~~~~~~~~~~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal 89 (409)
T KOG0053|consen 10 MKSMESESRLSHLDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAAL 89 (409)
T ss_pred ccccccchhccccchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHH
Confidence 34444444 59999999999988873378999998 77777775 2222111 3889999999999999999999
Q ss_pred hCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEe
Q psy12791 72 EEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIE 150 (393)
Q Consensus 72 ~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~ 150 (393)
.|++.+++++||+.|+ .++..++.+|++++.....|++|...+......+|++..+++.++++++++++++++++||++
T Consensus 90 ~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~E 169 (409)
T KOG0053|consen 90 EGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLE 169 (409)
T ss_pred hCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEE
Confidence 9999999999999998 888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 151 NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 151 ~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+|.||++.+.|+++|.++|+++ |+++|||++++.++.+.|+.+|+|||+.|.+|+++|...+.+|.++.+.+++.++++
T Consensus 170 SPsNPll~v~DI~~l~~la~~~-g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~ 248 (409)
T KOG0053|consen 170 SPSNPLLKVPDIEKLARLAHKY-GFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLK 248 (409)
T ss_pred CCCCCccccccHHHHHHHHhhC-CCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHH
Confidence 9999999999999999999999 999999999999988999999999999999999999999999999998799999999
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
..+...|+..+|.++++..++++++..|++++.+++..++++|+.+|.++++.+|+++++++|..+.+...+..|.+.+.
T Consensus 249 ~~~~~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~ 328 (409)
T KOG0053|consen 249 FLQEDLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSV 328 (409)
T ss_pred HHHHHhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888766666666
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.++.+...+|.++++.+..+.|+|+++|+.++|..++|.. +.++....|+.++.||+|+|.|+.|+++.+|.+||+++
T Consensus 329 ~~~~~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 329 IFGNEEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKA 407 (409)
T ss_pred EcCCHHHHHHHHHhhhhhhcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence 65799999999999999999999999999999999999999 99999999999999999999999999999999999876
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 408 ~ 408 (409)
T KOG0053|consen 408 K 408 (409)
T ss_pred c
Confidence 3
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-55 Score=406.39 Aligned_cols=378 Identities=31% Similarity=0.513 Sum_probs=332.1
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC--------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG--------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
++++.|.++|.|..++... .+..+|++.+++|..+..+ .....+.|+|..+|....|+++||++.|.+.++
T Consensus 3 ~~~~~t~~~~~~~~~~~~~-~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~ 81 (395)
T PRK08114 3 DKKLDTQLVNAGRSKKYTQ-GSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCA 81 (395)
T ss_pred CCCcchheEeCCCCCCCCC-CCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Confidence 3558899999996432222 4788999999988654422 101247899999999999999999999999999
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
+++||+.|+ .++.+++++||+|++++..|++++..+...++.+|+++.+++..|.++++++++++|++|++++|.||+|
T Consensus 82 ~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~ 161 (395)
T PRK08114 82 LYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITM 161 (395)
T ss_pred EEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCC
Confidence 999999998 7788889999999999999999988887778889999999998899999999999999999999999999
Q ss_pred cccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 158 TVFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 158 ~~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
.+.|+++|.++|+++ +|+++++|++++.+..+.|+.+|+|+++.|.+||++|+.++.+|.++.+ +++.+.++......
T Consensus 162 ~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~ 240 (395)
T PRK08114 162 EVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCWEQLRENSYLM 240 (395)
T ss_pred EeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHHHHHHHHHHhc
Confidence 999999999999998 2599999999999888889999999999999999999998989987766 77777777777788
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--C
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--G 314 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 314 (393)
|...+|++++++.++++++..|++++.+++..+++||+.+|.|.+|.+|+++++++|.++.+++.++|++++|.+++ +
T Consensus 241 G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~ 320 (395)
T PRK08114 241 GQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLT 320 (395)
T ss_pred cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 4
Q ss_pred HHHHHHHHHhcCccccccccCCccccccC--cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADL--PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~--~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++..+|+++++.+..+.|+|+++|++++ +....+.. +.+ ..+..++.||||+|.|+.|+++++|.+||+++
T Consensus 321 ~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 321 DEQLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIGLEDVDDLIADLAAGFARI 394 (395)
T ss_pred HHHHHHHHHhCCcceeecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999974 33333322 222 23455699999999999999999999999865
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=409.02 Aligned_cols=381 Identities=31% Similarity=0.536 Sum_probs=338.3
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcE
Q psy12791 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHG 77 (393)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~ 77 (393)
-+..+++|.++|.|..++. . .+..+|++.+++|.....+. ....+.|+|..+|....|++.+|++.|.+.+
T Consensus 2 ~~~~~~~t~~~~~g~~~~~-~-~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~a 79 (432)
T PRK06702 2 GESWGKGTICVQGGYTPKN-G-EPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGA 79 (432)
T ss_pred CCCCCcchHheeCCCCCCC-C-CCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcE
Confidence 3556789999999975433 2 47789999999997654321 1335679999899999999999999999999
Q ss_pred EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-CHHHHHhhcCCCCcEEEEecCCCC
Q psy12791 78 LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-KIENLIKYIKPNTKMVWIENPTNP 155 (393)
Q Consensus 78 i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-d~~~l~~~l~~~~~~v~l~~p~np 155 (393)
++++||++|+ .++.+++++||+|+++.++|.+|+..+...+...|+++++++.. |+++++++++++||+|++++|+||
T Consensus 80 v~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP 159 (432)
T PRK06702 80 VATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNP 159 (432)
T ss_pred EEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCc
Confidence 9999999998 77788899999999999999999888777778899999999985 899999999999999999999999
Q ss_pred cccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecC---------hHHH
Q psy12791 156 LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND---------DSLQ 226 (393)
Q Consensus 156 tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~---------~~~~ 226 (393)
++.+.|+++|.++|+++ |+++|+|++++.+..+.|+..|+||++.|+|||++|..+.-+|.++... +++.
T Consensus 160 ~~~v~Di~~I~~iA~~~-gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~ 238 (432)
T PRK06702 160 AMNVLNFKEFSDAAKEL-EVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELV 238 (432)
T ss_pred cccccCHHHHHHHHHHc-CCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccc
Confidence 99999999999999999 9999999999988888999999999999999999988888787776321 1111
Q ss_pred ---------------------HHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeC
Q psy12791 227 ---------------------ARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLH 284 (393)
Q Consensus 227 ---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~ 284 (393)
.+.+ .....+|..+++++++++.++++++..|++++.+|+.++++||+++|.+.++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~y 318 (432)
T PRK06702 239 EPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNY 318 (432)
T ss_pred cccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence 1111 234456889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCC
Q psy12791 285 PGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~ 363 (393)
|++++.+.|.++.+++ .|+|++++|.++++.+.+.+|+++|+.+..+.++|+++|++.+|..++|..++.+.+...|++
T Consensus 319 Pgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~ 398 (432)
T PRK06702 319 PGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVT 398 (432)
T ss_pred CCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCC
Confidence 9999999999999999 679999999997678889999999999999999999999999999999999999999899999
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 364 DNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 364 ~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
++.||||+|.|+.|+++++|.+||+
T Consensus 399 ~~liRlSvGlEd~eDLi~Dl~~Al~ 423 (432)
T PRK06702 399 SDLIRLSVGIEDVSDIIADLEAALV 423 (432)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999997
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=408.16 Aligned_cols=384 Identities=34% Similarity=0.575 Sum_probs=337.6
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCc
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKH 76 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~ 76 (393)
|-...++.|.++|.|..+... .+..+|++.+.++.....+ .-...+.|+||++|...+|++++|+++|.+.
T Consensus 5 ~~~~~~~~t~~~~~~~~~~~~--~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~ 82 (398)
T PRK07504 5 MARKWRPATRLVHSGTLRSQF--GETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAED 82 (398)
T ss_pred ccccCCcccceeeCCCCCCCC--CCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCe
Confidence 556677889999999644222 3567889888887654321 1123578999999999999999999999998
Q ss_pred EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCC
Q psy12791 77 GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP 155 (393)
Q Consensus 77 ~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 155 (393)
.+++++|++++ .++..++++||+|+++++.|+++...+...++..|++++.++..|+++++++++++|++|++++|+||
T Consensus 83 ~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~Np 162 (398)
T PRK07504 83 ARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNP 162 (398)
T ss_pred eeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCC
Confidence 88999999998 66777889999999999999987776777777889999999877999999999999999999999999
Q ss_pred cccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHHHHHHHHH
Q psy12791 156 LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 156 tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~~~~~~~~ 234 (393)
||.+.|+++|.++|+++ |+++|+|++|+.+....+...++|+++.|+||+++ .+|.++ |+++++++.+.+.++....
T Consensus 163 tG~v~dl~~I~~la~~~-gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~-g~g~~~GG~vv~~~~~i~~~~~~~~~ 240 (398)
T PRK07504 163 TLEVIDIAAVAKIANQA-GAKLVVDNVFATPLFQKPLELGAHIVVYSATKHID-GQGRCLGGVVLSDKAWIEEHLQDYFR 240 (398)
T ss_pred CcEecCHHHHHHHHHHc-CCEEEEECCccccccCCchhhCCCEEEeecccccc-CCccceEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999 99999999999877777777889999999999995 567676 5666663334445655555
Q ss_pred hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
..|..+++..+++++++++++..|++++.++++.+.++|+.+|.+.+|.||+++++++|.++.+.++++|++++|.++++
T Consensus 241 ~~g~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~ 320 (398)
T PRK07504 241 HTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGG 320 (398)
T ss_pred HhCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCC
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999767
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...+|++.++.+..+.|+|+.+|++.+|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++.
T Consensus 321 ~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 321 KEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKVR 397 (398)
T ss_pred HHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence 88899999999999999999999999999999999999999988999999999999999999999999999998764
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=403.85 Aligned_cols=376 Identities=40% Similarity=0.673 Sum_probs=339.3
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHHH
Q psy12791 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA 89 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~~ 89 (393)
+.|.++|.|..+.. . .+..+|++.+++|....... ...+.|+|+++|..++|++.+|+++|.++.+++++|++++.+
T Consensus 1 ~~t~~~~~~~~~~~-~-~~~~~pi~~~~~~~~~~~~~-~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~ 77 (378)
T TIGR01329 1 LSTLLVNTDNKNDP-Y-DASSMPIYQTATFKQPLAIE-NGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDV 77 (378)
T ss_pred CCceeEeCCCCCCC-C-CCcCCCeecCcceecCCccc-cCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence 35778899865433 3 46778999999997765433 345889999999999999999999999999999999988844
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
++.++++||+|+++++.|+++...+...++..|+++++++..|++++++++++++++|++++|+||+|.+.|+++|.++|
T Consensus 78 ~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la 157 (378)
T TIGR01329 78 ITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMA 157 (378)
T ss_pred HHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHH
Confidence 44578999999999999998776677777889999999999999999999998999999999999999999999999999
Q ss_pred HhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12791 170 KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
+++ |+++|+|++++.+....++..++|+++.|++|+++|+.++++|+++++++++.++++..+...|...++.+++++.
T Consensus 158 ~~~-g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~ 236 (378)
T TIGR01329 158 HAQ-NALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLL 236 (378)
T ss_pred HHc-CCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 999 9999999999877766777789999999999999888889999999976778788877777678888999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccc
Q psy12791 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (393)
++++++..|+++..+++..++++|+.+|.+.++.+|++++.+.+.++.+.+.+++++++|.+ ++.+...+|++.|+.++
T Consensus 237 ~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~~~~~~~~~~~L~~~~ 315 (378)
T TIGR01329 237 RGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GSVALSKRLVEATKLFS 315 (378)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CCHHHHHHHHHhCcCcc
Confidence 99999999999999999999999999999999999999999999999998888999999999 67787999999999999
Q ss_pred cccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 330 ~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+++++|+++|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 316 i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 316 ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTA 376 (378)
T ss_pred cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998888899999999999999999999999999999865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=403.73 Aligned_cols=376 Identities=41% Similarity=0.629 Sum_probs=333.8
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC---CCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHH
Q psy12791 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP---PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA 86 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a 86 (393)
-+|.++|+|..++. . .+..+|++.+++|.....+.. ...+.|+|+++|...+|++++|+++|.++++++++|++|
T Consensus 3 ~~t~~~~~~~~~~~-~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~A 80 (385)
T PRK08574 3 RGTDAVRGYRGSDP-Y-GSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAA 80 (385)
T ss_pred ccceeeecCCCCCC-C-CCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHH
Confidence 45778898855433 2 477899999999976543111 224779999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccccCHHH
Q psy12791 87 V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKA 164 (393)
Q Consensus 87 l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~ 164 (393)
+ .++.+++++||+|+++.+.|+++...+.. ++..|++++.++. |++++++++.+ ++++|++++|+||||.++|+++
T Consensus 81 i~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~ 158 (385)
T PRK08574 81 ISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPE 158 (385)
T ss_pred HHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecCHHH
Confidence 8 77778899999999999999987665554 3778999988765 68899999987 8999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 165 l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
|.++|+++ |+++|+|++|+.+....++..++|+++.|+||+++|+.+..+|+++++++++.++++..+...|...++.+
T Consensus 159 I~~la~~~-gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~ 237 (385)
T PRK08574 159 VAKAAKEL-GAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFE 237 (385)
T ss_pred HHHHHHHc-CCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999 99999999998877666777889999999999997666556787777668898988877777888899999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC--CCcceEEEEEcCCHHHHHHHH
Q psy12791 245 CWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS--GTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 322 (393)
+++++++++++..|++++.+++..+.++|+.+|.+.+|.+|++++.+.|.++.+++. ++|++++|+++++.+.+.+|+
T Consensus 238 a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~ 317 (385)
T PRK08574 238 AYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFL 317 (385)
T ss_pred HHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999885 689999999976788999999
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++|+.+..+.++|+.+|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 318 ~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~ 385 (385)
T PRK08574 318 RSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGSI 385 (385)
T ss_pred HcCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-54 Score=409.47 Aligned_cols=381 Identities=38% Similarity=0.698 Sum_probs=341.8
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
.++.+.++|.++|+|..++. . ++..+|++.+++|....... ...+.|+|+++|..+.+++.+|++.+.+.++++++|
T Consensus 81 ~~~~~~~~t~~~~~~~~~~~-~-~~~~~Pi~~sst~~~~~~~~-~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG 157 (464)
T PLN02509 81 IKEEASVSTLLVNLDNKFDP-F-DAMSTPLYQTATFKQPSAIE-NGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSG 157 (464)
T ss_pred cccCCCcchHheeCCCCCCC-C-CCccCCccccceecCccccc-cCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcH
Confidence 34567789999999965532 2 47788999999986644322 235789999999999999999999998889999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHH
Q psy12791 84 LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVK 163 (393)
Q Consensus 84 ~~al~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~ 163 (393)
++++.++..++++||+|+++++.|+++...+...+...|++++.++..|++++++++.+++++|++++|+||+|.+.|++
T Consensus 158 ~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~ 237 (464)
T PLN02509 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIR 237 (464)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHH
Confidence 98885555678999999999999998766666667788999999998899999999998999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHH
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
+|.++|+++ |+++|+|++|+.+....+...++|+++.|++|+++|+.++.+|+++++++.+.++++..+...+...++.
T Consensus 238 ~I~~lAk~~-g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~ 316 (464)
T PLN02509 238 KIAEMAHAQ-GALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPF 316 (464)
T ss_pred HHHHHHHHc-CCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHH
Confidence 999999999 9999999999988777777789999999999999888888899999876777777776666667778999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
++++.+++++++..|++++.++++.++++|+++|.|++|.||+++++++|.++.+++.++|++++|.+ ++.+.+.+|++
T Consensus 317 ~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~-~~~~~~~~f~~ 395 (464)
T PLN02509 317 DCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVE 395 (464)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 67888999999
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+++.+..+.++|+++|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+.
T Consensus 396 ~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 396 TTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRT 461 (464)
T ss_pred cCCcceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999974
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=381.89 Aligned_cols=382 Identities=38% Similarity=0.615 Sum_probs=344.0
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC------C-CCCccccCCCCchHHHHHHHHHHHhCCCcE
Q psy12791 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ------P-PQGFEYSRSNNPTRRNLERCIASLEEAKHG 77 (393)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~-~~~~~y~~~~~~~~~~lr~~la~~~~~~~~ 77 (393)
.+..+|+|.++|+|.. +... ++...|++.+++|..+..+. + ..++.|+|..+|....|++++|.+.|.-..
T Consensus 3 ~~~~~f~T~~vHag~~-d~~t-~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa 80 (426)
T COG2873 3 SANWGFETLAVHAGQE-DPTT-GARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAA 80 (426)
T ss_pred ccccCcchhhhcCCCC-CCCC-CceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhh
Confidence 4567899999999999 4443 68999999999998765432 2 237889999999999999999999998899
Q ss_pred EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 78 LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 78 i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
+.+.||+.|+ .++..++++||+|+.++.-|++++..+...++++|+++++++.+|++.++++++++||+||++...||.
T Consensus 81 ~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~ 160 (426)
T COG2873 81 LAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPG 160 (426)
T ss_pred hhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCC
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecC--------------
Q psy12791 157 MTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND-------------- 222 (393)
Q Consensus 157 G~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~-------------- 222 (393)
+.+.|++.|.++|+++ |+++|||++++.+++..|++.|+|||+.|.+||.+|..--.+|.++-..
T Consensus 161 ~~v~Die~ia~iAh~~-gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~ 239 (426)
T COG2873 161 LDVLDIEAIAEIAHRH-GVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFT 239 (426)
T ss_pred ccccCHHHHHHHHHHc-CCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccC
Confidence 9999999999999999 9999999999999999999999999999999999765554555555210
Q ss_pred -----------------hHHHHHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeC
Q psy12791 223 -----------------DSLQARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLH 284 (393)
Q Consensus 223 -----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~ 284 (393)
..++-+.+ ......|...+|+.+++.+.+++++..|++++.+|+.++++||+.+|.|.+|+|
T Consensus 240 ~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~Y 319 (426)
T COG2873 240 TPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNY 319 (426)
T ss_pred CCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeec
Confidence 01111111 222357899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCC
Q psy12791 285 PGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~ 363 (393)
|+|++++.|....+.. +++|++++|.+++..+...+|++.|+.+......|.+.|+..+|++++|..+..++..++|+.
T Consensus 320 pgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~ 399 (426)
T COG2873 320 PGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVT 399 (426)
T ss_pred CCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCC
Confidence 9999999999998765 578999999998888999999999999988999999999999999999999999999999999
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 364 DNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 364 ~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
++.||+|+|.|+.++++++|.+||++
T Consensus 400 ~~~IRlSVGIEd~~DiiaDl~qAl~~ 425 (426)
T COG2873 400 PDLIRLSVGIEDIDDIIADLEQALEA 425 (426)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999975
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-54 Score=404.92 Aligned_cols=381 Identities=33% Similarity=0.544 Sum_probs=337.7
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCc
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKH 76 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~ 76 (393)
+..+.++.|.++|+|..++. . .+..+|+.++++|.....+. -...+.|+||++|...+|++++|++.|.++
T Consensus 10 ~~~~~~~~t~~~~~~~~~~~-~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~ 87 (403)
T PRK07810 10 LPDGVSQATIGVRGGLLRSG-F-EETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEA 87 (403)
T ss_pred ccccCCcchhheeCCCCCCC-C-CCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCc
Confidence 44556789999999965433 2 46678999999886543221 123467999999999999999999999999
Q ss_pred EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCC
Q psy12791 77 GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP 155 (393)
Q Consensus 77 ~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 155 (393)
+++++||++|+ .++.+++++||+|+++...|++++..+...++..|+++++++..|++++++++++++++|++++|+||
T Consensus 88 al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Np 167 (403)
T PRK07810 88 CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNP 167 (403)
T ss_pred EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCC
Confidence 99999999998 77778899999999999999988888888888899999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 156 LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 156 tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
+|.+.|+++|.++|+++ |+++|+|++|+.+..+.++..++|+++.|++|+++|..+..+|+++++++.+.++++.....
T Consensus 168 tg~v~dl~~I~~la~~~-g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~ 246 (403)
T PRK07810 168 MQSLVDIAAVSELAHAA-GAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH 246 (403)
T ss_pred CCeecCHHHHHHHHHHc-CCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999887777877899999999999996543344588888744444566666566
Q ss_pred cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--
Q psy12791 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-- 313 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 313 (393)
.|..+++.+++++.++++++..|++++.+++.++.++|+.+|.+.+|.+|+++++++|.++.+.+.++|++++|.+++
T Consensus 247 ~g~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~ 326 (403)
T PRK07810 247 TGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPE 326 (403)
T ss_pred hCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCC
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred --CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 314 --GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 314 --~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.+.+.+|+++++.+..+.++|+.+|+..+|..++|..++.+.....|++++.+|||+|.|+.++++++|.+||
T Consensus 327 ~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al 402 (403)
T PRK07810 327 DAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL 402 (403)
T ss_pred CcCHHHHHHHHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 46888999999999999999999999999999999999998888899999999999999999999999999987
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=404.58 Aligned_cols=378 Identities=34% Similarity=0.585 Sum_probs=336.5
Q ss_pred CCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
+.+++.|.++|+|..++. . .+..+|+++++++....... -...+.|+|+++|...++++.+|+++|.++.+
T Consensus 3 ~~~~~~t~~~~~~~~~~~-~-~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v 80 (390)
T PRK08133 3 DSLGFDTLAVRAGQLRSP-F-GEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACV 80 (390)
T ss_pred ccCCcchhheeCCCCCCC-C-CCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEE
Confidence 345678999999965433 2 46778899998886543211 01246799999999999999999999999999
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
++++|++|+ .++.+++++||+|+++++.|++++..+...++..|+++++++.+|++++++.+.++|++|++++|+||||
T Consensus 81 ~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG 160 (390)
T PRK08133 81 ATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLT 160 (390)
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCC
Confidence 999999998 7777889999999999999999888787778889999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHHHHHHHHHhc
Q psy12791 158 TVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 158 ~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~~~~~~~~~~ 236 (393)
.+.|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||+++ .+|.++ |+++++ +++++++.......
T Consensus 161 ~v~dl~~I~~la~~~-gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~-g~g~~~GG~vv~~-~~~~~~~~~~~~~~ 237 (390)
T PRK08133 161 ELADIAALAEIAHAA-GALLVVDNCFCTPALQQPLKLGADVVIHSATKYLD-GQGRVLGGAVVGS-KELMEEVFGFLRTA 237 (390)
T ss_pred CcCCHHHHHHHHHHc-CCEEEEECCCcccccCCchhhCCcEEEeecceeec-CCcceEeEEEEcC-HHHHHHHHHHHHHh
Confidence 999999999999999 99999999998877777777789999999999994 677665 667666 67777777666677
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
+...++..+++++++++++..|++++.+++..+.++|+++|.+.++.+|++++.++|.++.+.+.++|++++|.++++.+
T Consensus 238 g~~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~ 317 (390)
T PRK08133 238 GPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGRE 317 (390)
T ss_pred CCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999976788
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
...+|+++++.+..+.++|+.+|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||+
T Consensus 318 ~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~ 389 (390)
T PRK08133 318 AAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLA 389 (390)
T ss_pred HHHHHHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999898999999999999999999999999999986
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=400.97 Aligned_cols=374 Identities=37% Similarity=0.661 Sum_probs=328.6
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
.+++.|.++|.|..+++.. ++..+|++.+++|.....+. -...+.|+||++|...+|++.+|+++|.+++++
T Consensus 3 ~~~~~t~~~~~~~~~~~~~-~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~ 81 (386)
T PRK06767 3 KKHMETALIHHGYTSEEHK-GSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALA 81 (386)
T ss_pred CCCcccceeeCCCCCCCCC-CCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEE
Confidence 3458899999996544322 47789999999997655321 123478999999999999999999999999999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
++||++++ .++.+++++||+|+++.+.|++++..+.......|+++..++..|++++++++.+++++|++++|+||||.
T Consensus 82 ~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~ 161 (386)
T PRK06767 82 FGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMK 161 (386)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCce
Confidence 99999998 77778899999999999999988887877777889999988888999999999889999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCce-EEEEEecChHHHHHH-HHHHHhc
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVV-MGATVTNDDSLQARL-KFLQNSM 236 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r-~G~~~~~~~~~~~~~-~~~~~~~ 236 (393)
+.|+++|.++|+++ |+++|+|++|+.+..+.++..++|+++.|+||+++| +|.+ +|+++++ +++++.+ +......
T Consensus 162 v~dl~~I~~la~~~-g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g-~g~~~gG~v~~~-~~~i~~~~~~~~~~~ 238 (386)
T PRK06767 162 LIDLKQVIRVAKRN-GLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGG-HGDVVAGVTICK-TRALAEKIRPMRKDI 238 (386)
T ss_pred ecCHHHHHHHHHHc-CCEEEEECCCcccccCCchhcCCcEEEecCcceecC-CCCceeEEEEeC-hHHHHHHHHHHHHHh
Confidence 99999999999999 999999999988777777778899999999999964 4545 6999987 5555554 4555667
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
|...+++.++++.++++++..+++++.+++..++++|+++|.+..+.+| ++.++.+.+++.|++++|.++++.+
T Consensus 239 g~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~ 312 (386)
T PRK06767 239 GGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKE 312 (386)
T ss_pred CCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHH
Confidence 7778899999999999999999999999999999999999999999988 5678888888899999999976678
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+|+++++.++++.++|+++|++.+|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||+++
T Consensus 313 ~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~ 386 (386)
T PRK06767 313 ETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKKI 386 (386)
T ss_pred HHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 89999999999999999999999999999999999998999899999999999999999999999999999854
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=398.42 Aligned_cols=383 Identities=36% Similarity=0.575 Sum_probs=334.3
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
.+++|.++|+|..++... .+..+|++.+++|.....+ .....+.|+|+.+|....|++.+|+++|.+.++++
T Consensus 12 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~ 90 (436)
T PRK07812 12 WSFETKQIHAGQTPDPAT-NARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLL 90 (436)
T ss_pred CCcchhheeCCCCCCCCC-CCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence 457899999996544433 4788999999999765422 11234679999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC-CCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD-LRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~-~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+||+.|+ .++.+++++||+|+++...|++++..+...+...|++++.++ ..|++++++++++++++|++++|+||+|.
T Consensus 91 sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~ 170 (436)
T PRK07812 91 ASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQID 170 (436)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCe
Confidence 9999998 788888999999999999999988777676778899999996 56899999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh---------------
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD--------------- 223 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~--------------- 223 (393)
+.|+++|.++|+++ |+++|+|++++.+....++..++|+++.|+||+++|+.+..+|.++.+..
T Consensus 171 v~Dl~~I~~la~~~-gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~ 249 (436)
T PRK07812 171 VLDIPGVAEVAHEA-GVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPD 249 (436)
T ss_pred ecCHHHHHHHHHHc-CCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCC
Confidence 99999999999999 99999999999877777888899999999999997766666666664311
Q ss_pred --------------HHHHHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCC
Q psy12791 224 --------------SLQARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLP 288 (393)
Q Consensus 224 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~ 288 (393)
.+..+++ ......|..+++.++++++++++++..|++++.+++.+++++|+.+|.++++.+|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~ 329 (436)
T PRK07812 250 PSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLP 329 (436)
T ss_pred cccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 1111122 3344578999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeE
Q psy12791 289 SHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367 (393)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~i 367 (393)
+.+.|.++.+.+ .++|++++|.++++.+.+.+|+++++.+..+.++|+.+|++++|..++|..++.+....+|++++.|
T Consensus 330 s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~li 409 (436)
T PRK07812 330 SSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLV 409 (436)
T ss_pred CCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeE
Confidence 999999999987 7799999999976778899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 368 RLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 368 Rls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
|||+|.|+.|+++++|.+||+++.+
T Consensus 410 RlSvGlEd~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 410 RLAVGIEGIDDILADLEAGFAAAKA 434 (436)
T ss_pred EEEeccCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999997754
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=399.49 Aligned_cols=380 Identities=35% Similarity=0.570 Sum_probs=329.2
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|.|..+++.. .+..+|++++++|.....+. -...+.|+|+++|...+|+++||++.|.+.+++++
T Consensus 2 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~s 80 (425)
T PRK06084 2 KLETLAIHAGYSPDPTT-KAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVA 80 (425)
T ss_pred CcchhheeCCcCCCCCC-CCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEeh
Confidence 36688899986544332 47788999999997654321 02247899999999999999999999988999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
||+.++ .++.+++++||+|+++.+.|++++..+...+...|+++.+++..|++++++++.+++++|++++|+||||.++
T Consensus 81 sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~ 160 (425)
T PRK06084 81 SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNII 160 (425)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeec
Confidence 999998 7778889999999999999998877776666778999999998899999999998999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh----HH-----------
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD----SL----------- 225 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~----~~----------- 225 (393)
|+++|.++|+++ ++++|+|++|+.+....++..++|+++.|++|+++|+.+..+|+++.++. ..
T Consensus 161 dl~~I~~la~~~-~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~ 239 (425)
T PRK06084 161 DIQALADAAHRH-GVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPD 239 (425)
T ss_pred CHHHHHHHHHHc-CCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCC
Confidence 999999999999 99999999999887777777899999999999997554444454554321 00
Q ss_pred -----------------H-HHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCC
Q psy12791 226 -----------------Q-ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGL 287 (393)
Q Consensus 226 -----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l 287 (393)
. +........+|..+++.++++++++++++..|++++.+++..++++|+.+|.+.+|.+|++
T Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l 319 (425)
T PRK06084 240 PSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL 319 (425)
T ss_pred cccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 0 0011223457889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhcCC-CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCe
Q psy12791 288 PSHPNHELAKSQWSG-TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366 (393)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~ 366 (393)
++++.|.++.+.+.+ +|++++|.++++.+.+.+|+++|+.+..+.++|+++|++++|..++|..++.+.....|++++.
T Consensus 320 ~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~l 399 (425)
T PRK06084 320 PDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDM 399 (425)
T ss_pred CCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCe
Confidence 999999999999887 8999999997677788999999999999999999999999999999999998888899999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHh
Q psy12791 367 VRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 367 iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
||||+|.|+.|+++++|.+||++.
T Consensus 400 iR~svGlEd~~dLi~dl~~Al~~~ 423 (425)
T PRK06084 400 VRLSIGIEHIDDIIADLAQALDAS 423 (425)
T ss_pred EEEEeccCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999865
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=400.60 Aligned_cols=376 Identities=38% Similarity=0.604 Sum_probs=330.3
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEecc
Q psy12791 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS 82 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~ 82 (393)
+.|.++|+|..+++.. .+..+|+.++.+|.....+. ....+.|+|+++|...+|++++|+++|.++++++++
T Consensus 2 ~~t~~~~~~~~~~~~~-~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~s 80 (418)
T TIGR01326 2 FETLQLHAGQEPDPTT-GSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVAS 80 (418)
T ss_pred ccceeEECCCCCCCCC-CCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEcc
Confidence 5688999986554332 46788999998887654321 122367999999999999999999999999999999
Q ss_pred HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|+.|+ .++.+++++||+|+++++.|++++..+...++..|++++.++.+|++++++.+.+++++|++++|+||||.+.|
T Consensus 81 G~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~d 160 (418)
T TIGR01326 81 GQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPD 160 (418)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC
Confidence 99998 77778899999999999999988888888888999999999988999999999989999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHH---------------
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ--------------- 226 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~--------------- 226 (393)
+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||++ |.+|.|+|+++.+++.+.
T Consensus 161 l~~I~~la~~~-~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l-~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T TIGR01326 161 IEAIAEVAHAH-GVPLIVDNTFATPYLCRPIDHGADIVVHSATKYI-GGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS 238 (418)
T ss_pred HHHHHHHHHHc-CCEEEEECCCchhhcCCchhcCCeEEEECccccc-cCCccceEEEEEecccccccccccccccCCCCc
Confidence 99999999999 9999999999877666677778999999999999 578999999888632211
Q ss_pred -----------------HHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCC
Q psy12791 227 -----------------ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPS 289 (393)
Q Consensus 227 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~ 289 (393)
+.........|...+|.+++++.++++++..|++++.+++..++++|..+|.|..+.+|++++
T Consensus 239 q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~ 318 (418)
T TIGR01326 239 YHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS 318 (418)
T ss_pred cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 111122334577889999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEE
Q psy12791 290 HPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368 (393)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iR 368 (393)
++.|.++.+.+ .++|++++|.++++.+.+.+|+++++.+..+.|+|+++|++++|..++|..++.+.....|++++.||
T Consensus 319 ~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR 398 (418)
T TIGR01326 319 HPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIR 398 (418)
T ss_pred CccHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEE
Confidence 99999999988 68999999999767788899999999999999999999999999999999999888889999999999
Q ss_pred EEecCCChHHHHHHHHHHHH
Q psy12791 369 LSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 369 ls~~~~~~~~~i~~l~~al~ 388 (393)
||+|.|+.++++++|.+||+
T Consensus 399 ~svGlE~~~dl~~dl~~Al~ 418 (418)
T TIGR01326 399 LSVGIENIDDIIADLEQALE 418 (418)
T ss_pred EEecCCCHHHHHHHHHHhhC
Confidence 99999999999999999984
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=396.83 Aligned_cols=384 Identities=34% Similarity=0.562 Sum_probs=332.5
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
.+++.|.++|.|..+++.. ++..+|++++++|.....+. -...+.|+|+.+|...++++.+|+++|.+.+++
T Consensus 6 ~~~~~t~~~~~~~~~~~~~-~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av~ 84 (433)
T PRK08134 6 PPGFDTLALHAGAAPDPAT-GARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAIA 84 (433)
T ss_pred CCCcchhheeCCCCCCCCC-CCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEEE
Confidence 3458899999996554433 47788999999997654321 123578999999999999999999999999999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
++||++|+ .++.+++++||+|+++..+|+++...+...++..|+++++++.+|++++++.++++|++|++++|+||+|.
T Consensus 85 ~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~ 164 (433)
T PRK08134 85 TASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLE 164 (433)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccCc
Confidence 99999998 67777899999999999999988777766667899999999998999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh---------------
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD--------------- 223 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~--------------- 223 (393)
+.|+++|.++|+++ |+++|+|++++.++.+.++..++|+++.|.+|+++|+.+..+|.++....
T Consensus 165 v~Di~~I~~la~~~-gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~ 243 (433)
T PRK08134 165 VLDIPTVAAIAHEA-GVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEP 243 (433)
T ss_pred ccCHHHHHHHHHHc-CCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCC
Confidence 99999999999999 99999999999888878888899999999999996544444454442210
Q ss_pred ----------------HHHHHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCC
Q psy12791 224 ----------------SLQARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPG 286 (393)
Q Consensus 224 ----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~ 286 (393)
.+..+.+ ......|...++.+++++.++++++..|++++.+++.+++++|+.+|.+.++.+|+
T Consensus 244 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~ 323 (433)
T PRK08134 244 YAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPE 323 (433)
T ss_pred cccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 0001111 12235678899999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCC
Q psy12791 287 LPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365 (393)
Q Consensus 287 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 365 (393)
+++++.|.++.+.+ .++|++++|.++++.+.+.+|+++++.+..+.++|+++|++++|..++|..++.+.....|++++
T Consensus 324 l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~ 403 (433)
T PRK08134 324 LESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEG 403 (433)
T ss_pred CCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCC
Confidence 99999999999888 68999999999766788999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 366 LVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 366 ~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.||||+|.|+.|+++++|.+||+++.+
T Consensus 404 liRlsvGlE~~~dli~dl~~Al~~~~~ 430 (433)
T PRK08134 404 TIRLSIGLEDADDLIDDLKRALKAAEK 430 (433)
T ss_pred eEEEEeccCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999997653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=393.26 Aligned_cols=371 Identities=36% Similarity=0.599 Sum_probs=330.8
Q ss_pred cceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 11 ATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
.|.++|.|..++. . .+..+|++++.++...... .-...+.|+||++|...+|++.+|+++|.++++++++|
T Consensus 1 ~t~~~~~~~~~~~-~-~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG 78 (380)
T TIGR01325 1 ATLAIRGGKERTE-F-REHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATG 78 (380)
T ss_pred CceeEECCCCCCC-C-CCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCH
Confidence 3667898864433 2 4567889999988654321 00234779999999999999999999999999999999
Q ss_pred HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCH
Q psy12791 84 LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV 162 (393)
Q Consensus 84 ~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~ 162 (393)
++++ .++.+++++||+|+++.+.|++++..+...++..|++++.++.+|++++++.+++++++|++++|+||+|.+.|+
T Consensus 79 ~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl 158 (380)
T TIGR01325 79 MSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDI 158 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCH
Confidence 9998 777788899999999999999988778878888999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCce-EEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVV-MGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||+++ .+|.+ +|+++++ +++++.++......|...+
T Consensus 159 ~~I~~la~~~-gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~-g~g~~~gG~vv~~-~~~~~~l~~~~~~~g~~~~ 235 (380)
T TIGR01325 159 AALAELAHAI-GALLVVDNVFATPVLQQPLKLGADVVVYSATKHID-GQGRVMGGVIAGS-EELMAEVAVYLRHTGPAMS 235 (380)
T ss_pred HHHHHHHHHc-CCEEEEECCCcccccCCchhhCCCEEEeeccceec-CCCCeEEEEEEeC-HHHHHHHHHHHHhhCCCCC
Confidence 9999999999 99999999999877777777889999999999995 45655 5788876 7788888777667788889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
+..+++++++++.+..+++++.+++..+.++|+++|.+.+|.+|++++.++|.++.+.+.++|++++|.++ +.+.+.+|
T Consensus 236 p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~~~~~~f 314 (380)
T TIGR01325 236 PFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DRAAAWKV 314 (380)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 78889999
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+++|+.+..+.++|+++|+..+|..++|..++.+.....|+.++.||||+|.|+.+++++++.+||
T Consensus 315 ~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al 380 (380)
T TIGR01325 315 LDAVELVSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL 380 (380)
T ss_pred HHcCCcceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999998888899999999999999999999999999885
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=390.32 Aligned_cols=371 Identities=32% Similarity=0.530 Sum_probs=323.0
Q ss_pred ceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC---CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-
Q psy12791 12 TKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ---PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV- 87 (393)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al- 87 (393)
|.++|+|..+++.. ++..+|++++++|....... -...+.|+|.++|....|++++|+++|.+++++++||+.|+
T Consensus 1 t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~ 79 (377)
T TIGR01324 1 TRLIHSGRQPRFSQ-GSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVT 79 (377)
T ss_pred CeeEECCCCCCCCC-CCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHH
Confidence 45788886554332 47789999999997654221 02357899999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
.++.+++++||+|+++++.|+++.......++..|+++..++..+.+++++.+.++||+|++++|+||+|.+.|+++|.+
T Consensus 80 ~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~ 159 (377)
T TIGR01324 80 NSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAK 159 (377)
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHH
Confidence 77888899999999999999887655555567789999998776668899999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
+|+++ |+++|+|++|+.+....++..++|+++.|++|+++|++++.+|+++++ ++.+++++......|...++.+++.
T Consensus 160 la~~~-g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~-~~~~~~l~~~~~~~G~~l~p~~a~~ 237 (377)
T TIGR01324 160 AARNP-GIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVAN-ARTWDQLREHSYLMGQMVDADDAYT 237 (377)
T ss_pred HHHHc-CCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeC-HHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999 999999999999887788889999999999999999999999999887 6777777766667899999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcC
Q psy12791 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLL 326 (393)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 326 (393)
+.++++++..|++++.+++.++++||+.+|.+.++.+|++++.+.+.++.+++.+++++++|.+++ +.+...+|+++|+
T Consensus 238 ~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~ 317 (377)
T TIGR01324 238 TLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQ 317 (377)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999975 6788999999999
Q ss_pred ccccccccCCccccccCcc-cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 327 IFRCAESLGGIESLADLPA-EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~-~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++++.|+|+++|+..++. .++|.. ....|..++.||||+|.|+.|+++++|.+||+++
T Consensus 318 ~~~~~~slG~~~sl~~~~~~~~~~~~-----~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~~ 377 (377)
T TIGR01324 318 LFGLGYSWGGYESLALCNQPELGHRP-----NIKRNLEGPLIRVHIGLENVDDLKADLKAGFEAI 377 (377)
T ss_pred cceEeccCCCccceeecCCCCCCHHH-----HHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999986321 333332 2245666789999999999999999999999864
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=392.76 Aligned_cols=375 Identities=34% Similarity=0.521 Sum_probs=330.1
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
+++.|.++|+|..+++.. ++..+|++++++|.....+. -...+.|+||++|..++|++++|+++|.++.+++
T Consensus 8 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~ 86 (394)
T PRK07050 8 RALQTRIVQPDDQIPPGF-RSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ 86 (394)
T ss_pred CCccchheECCCCCCCCC-CCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 678899999997654433 47789999999997654321 1235789999999999999999999998888888
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
++|+.++ .++.+++++||+|++++++|++++..+...++..|++++.++..+.+++++.+.++|++|++++|+||+|.+
T Consensus 87 ~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~ 166 (394)
T PRK07050 87 PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEV 166 (394)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccH
Confidence 8889998 777788999999999999999887666667788999999998777788999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
.++++|.++|+++ |+++|+|++|..+....++..|+|+++.|++|+++|..++++|+++++++++.++++..+...|..
T Consensus 167 ~di~~I~~ia~~~-gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~ 245 (394)
T PRK07050 167 PDVPAITAAARAR-GVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG 245 (394)
T ss_pred hhHHHHHHHHHHc-CCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 9999999999999 999999999998887788888999999999999988889999999987789999998888878999
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--CHHH
Q psy12791 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAEE 317 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 317 (393)
.++.++++++++++++..|++++.+++.++++||+++|.+.++.+|++++.+.+..+.+.+.+++++++|.+++ +.+.
T Consensus 246 ~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~ 325 (394)
T PRK07050 246 VSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQ 325 (394)
T ss_pred CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899999999965 4688
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+|++.++.+.++.|+|+++|+.. |..+++.... ..+..++.||||+|.|+.|+++++|.+||.+.
T Consensus 326 ~~~~~~~l~~~~~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svGlE~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 326 VDAFVEALELFAIGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIGLEDEADLIADLEQALEAA 392 (394)
T ss_pred HHHHHHcCCCCeeccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987 5554444332 12245699999999999999999999999865
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=388.88 Aligned_cols=363 Identities=31% Similarity=0.489 Sum_probs=314.2
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV- 87 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al- 87 (393)
++.|.++|+|...++.. ++..+|+..+++|....... ...+.|+||++|...+|++++|+++ .++++++++|++++
T Consensus 3 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~ 79 (366)
T PRK07582 3 GDGTRSVHAGGPEAVPG-EPVLPGPVFAAPYHLSPGEP-TGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAIT 79 (366)
T ss_pred CcccceeeCCCCCCCCC-CCccCCccccceEEccCccc-cCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHH
Confidence 57788999985543322 47788999999997664322 2357799999999999999999999 57899999999998
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
.++.+++++||+|++++|+|+++.......++..|++++.++.++... .+.+++++|++++|+||||.+.|+++|.+
T Consensus 80 ~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~~I~~ 156 (366)
T PRK07582 80 AVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLAALAA 156 (366)
T ss_pred HHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHHHHHH
Confidence 777788999999999999998765555455677899999999865432 33467999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
+|+++ |+++|+|++|..+....+++.++|++++|+||+++|++|+|+||++++++++.++++..+...+..++++++++
T Consensus 157 ~a~~~-g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l 235 (366)
T PRK07582 157 AAHAA-GALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWL 235 (366)
T ss_pred HHHHc-CCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999 99999999998666667777789999999999999999999999998768899989888888888899999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
+.++++++..|++++.+++..++++|+.+|.+..+.+|++++.+.|.++.+.+.++|++++|.++ +.++..+|+++++.
T Consensus 236 ~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~~~~l~~ 314 (366)
T PRK07582 236 AHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAERFVAASRL 314 (366)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999995 78999999999999
Q ss_pred cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 328 ~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+..+.++|+++|+...+... ..+.+++.||+|+|.|++++++++|.+||+++
T Consensus 315 ~~~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svGlE~~~dli~dl~~al~~~ 366 (366)
T PRK07582 315 VVAATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCGIEDTDDLVADLERALDAL 366 (366)
T ss_pred ceecccCCCccchhhhHHHc-----------CCCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 99999999999887543211 12255799999999999999999999999863
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=393.51 Aligned_cols=381 Identities=33% Similarity=0.507 Sum_probs=331.2
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
.++.|+++|+|..+++.. ++..+|++.+++|..+..+. -...+.|+|..+|....+++.+|+++|.++++++
T Consensus 12 ~~~~t~~~~~~~~~~~~~-~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~f 90 (437)
T PRK05613 12 WGFETRSIHAGQSVDSDT-SARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAF 90 (437)
T ss_pred CCcchHheeCCCCCCCCC-CCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEe
Confidence 347899999996654433 57889999999997654211 0234779999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC-CCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD-LRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~-~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+||++|+ .++..++++||+|++++.+|+++...+...++..|+++++++ ..|+++++++++++|++|+++++.||+|.
T Consensus 91 sSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~ 170 (437)
T PRK05613 91 ASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQAD 170 (437)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCc
Confidence 9999998 777788899999999999999987666677788999999997 45899999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh---------------
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD--------------- 223 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~--------------- 223 (393)
+.|+++|.++|+++ |+++|+|++++.+....+...|+|+++.|++|+++|.....+|.++.+.+
T Consensus 171 v~di~~I~~la~~~-gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~ 249 (437)
T PRK05613 171 VLDIPAVAEVAHRN-QVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPY 249 (437)
T ss_pred ccCHHHHHHHHHHc-CCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCC
Confidence 99999999999999 99999999998877677777899999999999996554445676664311
Q ss_pred -------------------HHH-HHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEe
Q psy12791 224 -------------------SLQ-ARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVL 283 (393)
Q Consensus 224 -------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~ 283 (393)
.+. +........+|...+|++++++.++++++..|++++.+|+.++++||+++|.|.+|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~ 329 (437)
T PRK05613 250 FVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVN 329 (437)
T ss_pred CCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 001 111234456799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 284 HPGLPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 284 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
+|++++.+.|.++.+++ .++|++++|.++++.+.+.+|+++|+.+..+.++|+++|++++|..++|..++.+....+|+
T Consensus 330 yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi 409 (437)
T PRK05613 330 FAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGI 409 (437)
T ss_pred CCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCC
Confidence 99999999999999885 67899999999767888999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 363 ~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+++.||||+|.|+.|+++++|.+||+++
T Consensus 410 ~~~liRlsvGlE~~~dLi~Dl~~Al~~~ 437 (437)
T PRK05613 410 TQATVRLSVGIEDIDDIIADLEGGFAAI 437 (437)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999853
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-52 Score=389.40 Aligned_cols=360 Identities=51% Similarity=0.860 Sum_probs=327.7
Q ss_pred CCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCe
Q psy12791 28 CVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDH 99 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~ 99 (393)
+..+|++.+++|.....+. -...+.|+|+++|...+|++++|+++|.+++++++||++|+ .++.+++++||+
T Consensus 2 ~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~ 81 (369)
T cd00614 2 AVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDH 81 (369)
T ss_pred CcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCE
Confidence 4567888998887654321 12357899999999999999999999999999999999998 777788999999
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEE
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~liv 179 (393)
|+++.+.|++++..+...++..|+++..++.+|++++++.+++++++|++++|+||+|.+.|+++|.++|+++ |+++|+
T Consensus 82 Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~-g~~liv 160 (369)
T cd00614 82 VVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEH-GALLVV 160 (369)
T ss_pred EEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc-CCEEEE
Confidence 9999999999887777777889999999999999999999988899999999999999999999999999999 999999
Q ss_pred eCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHH
Q psy12791 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRL 259 (393)
Q Consensus 180 Dea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
|++|+.+....++..++|+++.|++|+++|+.++++|++++++++++++++.....+|...++..++++.++++++..++
T Consensus 161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~ 240 (369)
T cd00614 161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240 (369)
T ss_pred ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence 99999887767777889999999999997666689999999855888988887777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
+++.++++.+.++|+.+|.+.++.+|++++.+.+.++.+.+.++++++.|.++++.+.+.+|+++++.+..+.|+|+.+|
T Consensus 241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~s 320 (369)
T cd00614 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVES 320 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCce
Confidence 99999999999999999999999999999999999999999999999999996578899999999999999999999999
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
++++|..+.|..++.+.....|++++.||||+|.|+.++++++|.+||+
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~ 369 (369)
T cd00614 321 LVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK 369 (369)
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence 9999999999999888888899999999999999999999999999873
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=391.10 Aligned_cols=380 Identities=34% Similarity=0.554 Sum_probs=332.1
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
+++.|.++|.|..++... ++..+|+..+++|..+..+. -...+.|+|.++|....|++.+|++.|.+.++++
T Consensus 6 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~ 84 (427)
T PRK05994 6 PGFATLAVHAGAQPDPTT-GARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV 84 (427)
T ss_pred CCcchhheECCcCCCCCC-CCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence 458899999996554433 46778999999987554321 0123679999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+||++|+ .++.+++++||+|+++.++|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+
T Consensus 85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v 164 (427)
T PRK05994 85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTV 164 (427)
T ss_pred cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCee
Confidence 9999998 777788999999999999999988777777788999999999989999999999899999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh----------------
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD---------------- 223 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~---------------- 223 (393)
+|+++|.++|+++ |+++|+|++++.+....++..++|+++.|++|+++|+.|.-+|+++....
T Consensus 165 ~dl~~I~~la~~~-gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~ 243 (427)
T PRK05994 165 TDIAAIAEVAHRA-GLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPR 243 (427)
T ss_pred cCHHHHHHHHHHc-CCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCc
Confidence 9999999999999 99999999999887778888899999999999998777766676663211
Q ss_pred -H-----HHHHH----------HHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCC
Q psy12791 224 -S-----LQARL----------KFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGL 287 (393)
Q Consensus 224 -~-----~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l 287 (393)
. +.+.+ .......|..+++++++++.++++++..|++++.+++..+.++|+.+|.+..+.+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l 323 (427)
T PRK05994 244 PEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGL 323 (427)
T ss_pred chhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 0 11111 1123356888999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCe
Q psy12791 288 PSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366 (393)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~ 366 (393)
+..+.|.++.+.+ .++|++++|.++++.+...+|++.++.+..+.|+|+++|++++|..++|..++.+.....|++++.
T Consensus 324 ~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~l 403 (427)
T PRK05994 324 PDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDV 403 (427)
T ss_pred CCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCc
Confidence 9999999999985 789999999997678889999999999999999999999999999999999999988899999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHH
Q psy12791 367 VRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 367 iRls~~~~~~~~~i~~l~~al~~ 389 (393)
||||+|.|+.++++++|.+||++
T Consensus 404 iRlsvGlE~~~dli~dl~~Al~~ 426 (427)
T PRK05994 404 VRLSIGIEDVDDIIADLEQALAK 426 (427)
T ss_pred EEEEeccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999975
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=379.38 Aligned_cols=362 Identities=40% Similarity=0.678 Sum_probs=317.5
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHH
Q psy12791 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL 84 (393)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~ 84 (393)
++..++.|.++|+|..++... ++..+|++.+++|....... ...+.|+|+++|...+|++++|+++|.++.+++++|+
T Consensus 2 ~~~~~~~t~~~~~~~~~~~~~-~~~~~pi~~~st~~~~~~~~-~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~ 79 (364)
T PRK07269 2 SKDLHINTILAQAGIKSDEAT-GALVTPLHFSTTYQHPEFGQ-STGFDYTRTKNPTRAKLEETLAAIESADYALATSSGM 79 (364)
T ss_pred CccCCcccceeeCCCCCCCCC-CCccCCccCCcceecCCCCC-cCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHH
Confidence 445568899999997654433 46788999999997655332 3458899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHH
Q psy12791 85 GAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164 (393)
Q Consensus 85 ~al~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 164 (393)
+|+.++..++++||+|+++.+.|+++...+.......+.++.+. .|+++++++++++|++|++++|+||||.+.|+++
T Consensus 80 aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~ 157 (364)
T PRK07269 80 SAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEK 157 (364)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHH
Confidence 99833335679999999999999988765555444445555543 3889999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 165 l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
|.++|+++ |+++|+|++|..+..+.++..++|+++.|++|+++|+.++-+|+++++++++.++++..+...|...++.+
T Consensus 158 I~~la~~~-gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~ 236 (364)
T PRK07269 158 VAKLAHAK-GAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFD 236 (364)
T ss_pred HHHHHHHc-CCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHH
Confidence 99999999 99999999998877778888899999999999998877777999998778898988877777788899999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHh
Q psy12791 245 CWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLES 324 (393)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
++++.++++++..+++++.+++..+.+||+.+|.+.++.+|+ .|++++|.+. +.+...+|++.
T Consensus 237 a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~-~~~~~~~f~~~ 299 (364)
T PRK07269 237 SYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVA-DETRIPHILNS 299 (364)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEEC-CHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987 4799999995 67888999999
Q ss_pred cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
++.+..+.++|+.+|+..+|..++|..++.+.+...|+.++.||||+|.|+.++++++|.+||+
T Consensus 300 l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~ 363 (364)
T PRK07269 300 LKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE 363 (364)
T ss_pred CCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888888899999999999999999999999999985
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=383.72 Aligned_cols=359 Identities=32% Similarity=0.521 Sum_probs=314.9
Q ss_pred CCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC
Q psy12791 27 QCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD 98 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd 98 (393)
++..+|++++++|..+..+. -...+.|+|+++|...+|++++|++.|.+.++++++|+.|+ .++.+++++||
T Consensus 8 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd 87 (397)
T PRK05939 8 GAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGD 87 (397)
T ss_pred CCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCC
Confidence 46778999999987654321 12247799999999999999999999999999999999998 77778899999
Q ss_pred eEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
+|+++++.|+++...+. .++..|++++.++..|++++++.+.++|++|++++|+||||.+.|+++|.++|+++ |+++|
T Consensus 88 ~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~-gi~li 165 (397)
T PRK05939 88 HLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRER-GLLYV 165 (397)
T ss_pred EEEECCCccccHHHHHH-HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHc-CCEEE
Confidence 99999999988765554 36778999999999999999999999999999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChH--------H-------------HHHHH-HHHHhc
Q psy12791 179 LDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS--------L-------------QARLK-FLQNSM 236 (393)
Q Consensus 179 vDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~--------~-------------~~~~~-~~~~~~ 236 (393)
+|++|+.+....+...++|+++.|+||+++| .|-++|+++..+.. + +..++ ......
T Consensus 166 vD~t~a~~~~~~~~~~gaDivv~S~sK~~~g-~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (397)
T PRK05939 166 VDNTMTSPWLFRPKDVGASLVINSLSKYIAG-HGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDM 244 (397)
T ss_pred EECCcccccccCccccCCEEEEecCeecccC-CCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhc
Confidence 9999987765567777999999999999965 56677776664221 1 11121 223457
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
|...++.+++++.++++++..|++++.+|+..+++||+.+|.|.+|.+|++++.++|.++.+.+.++|++++|.++ +.+
T Consensus 245 G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~-~~~ 323 (397)
T PRK05939 245 GATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELA-DGI 323 (397)
T ss_pred CCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeC-CHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999996 456
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
...+|++.++.+..+.++|+++|+.++|..++|..++.+.....|++++.||||+|.|+.++++++|.+||++
T Consensus 324 ~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl~~Al~~ 396 (397)
T PRK05939 324 DCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA 396 (397)
T ss_pred HHHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999999988888888999999999999999999999999999974
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=377.66 Aligned_cols=361 Identities=44% Similarity=0.740 Sum_probs=321.3
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHH
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT 88 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~ 88 (393)
+++|.++|.|..++... ++..+|++.+++|....... ...+.|+||++|...+|++++|+++|.+.++++++|++++.
T Consensus 4 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~ 81 (366)
T PRK08247 4 TIETKLAQIGNRSDERT-GTVNPPVYFSTAYRHEGIGE-STGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQ 81 (366)
T ss_pred CcchhheeCCCCCCCCC-CCccCCcccCcccccCCCCC-cCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHH
Confidence 56788899986554332 57789999999997654332 23588999999999999999999999998999999999884
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
++..++++||+|++++|.|++++..+...++..|+++++++..|++++++++.+++++|++++|+||+|...++++|.++
T Consensus 82 ~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~l 161 (366)
T PRK08247 82 LVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKI 161 (366)
T ss_pred HHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHH
Confidence 45567899999999999999988888888888999999999999999999998899999999999999999999999999
Q ss_pred HHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
|+++ |+++|+|++|..+....+...++|+++.|+||+++|++++++|+++++++++.++++..+...+...++..++++
T Consensus 162 a~~~-g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~ 240 (366)
T PRK08247 162 AKKH-GLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLL 240 (366)
T ss_pred HHHc-CCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 9999 999999999987776677777899999999999988889999999987678888888777777778889999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
.++++++..+++++.+++..+.++|+.+|.+..+.+|+ .|+++.|.+. ..+...+|++.++.+
T Consensus 241 ~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~-~~~~~~~~~~~l~~~ 303 (366)
T PRK08247 241 IRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQ-DEEWVNPFLKSLKLI 303 (366)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEEC-CHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999998888885 3789999995 577788999999999
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..+.++|+.+++...|..+.|..++.+.+...|++++.+|||+|.|+.++++++|.+||++
T Consensus 304 ~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~ 364 (366)
T PRK08247 304 TFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQ 364 (366)
T ss_pred eEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 9999999999999999988888888888888999999999999999999999999999986
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=374.88 Aligned_cols=368 Identities=39% Similarity=0.650 Sum_probs=326.2
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|+|..++... .+..+|++.+++|.....+. ....+.|+|..+|...+|++.+|++.|.+.+++++
T Consensus 8 ~~~t~~~~~~~~~~~~~-~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~s 86 (384)
T PRK06434 8 GFNTRAVQSGELRDPRF-GNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFS 86 (384)
T ss_pred CcccceeECCCCCCCCC-CCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeC
Confidence 47788999996554333 46778999999987655321 02247899999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTV 159 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~ 159 (393)
||+.|+ .++.+++++||+|+++...|++++..+...+..+|+++++++.++.+.+. +++ ++++|++++|.|||+.+
T Consensus 87 SG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v 164 (384)
T PRK06434 87 SGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKV 164 (384)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCcee
Confidence 999998 77888899999999999999999888878888999999999987655554 444 68999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
.|+++|.++|+++ + +++|++++.++.+.|+..++|+++.|.+|+++|+.+..+|.++++++++.++++..+...|..
T Consensus 165 ~Di~~I~~la~~~-~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~ 241 (384)
T PRK06434 165 PDIKNVSSFCHEN-D--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSN 241 (384)
T ss_pred ecHHHHHHHHHHc-C--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCC
Confidence 9999999999999 7 567999988877788888999999999999987777789999887788888887776677888
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
.++.++++..++++++..|++++.++++.++++|+.+|.|++|.||+++ ++.+.+.++|++++|.++ +.+++.
T Consensus 242 ~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~-~~~~~~ 314 (384)
T PRK06434 242 PDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELR-SMEDVH 314 (384)
T ss_pred CCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEEC-CHHHHH
Confidence 8999999999999999999999999999999999999999999999985 677778899999999996 588899
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+|+++|+.+..+.|+|+++|++++|..++|..++.+.....|++++.||||+|.|+.++++++|.+||++
T Consensus 315 ~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~ 384 (384)
T PRK06434 315 KFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK 384 (384)
T ss_pred HHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999863
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=377.14 Aligned_cols=372 Identities=29% Similarity=0.432 Sum_probs=319.7
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC------CC-----CCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ------PP-----QGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~~-----~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
-.+.++|+|..++.. . ...+|++.+.+|..+..+. .. ..+.|+|+++|..++|++.+|+++|.+.++
T Consensus 18 ~~~~~~~~~~~~~~~-~-~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l 95 (418)
T PLN02242 18 PAAALASARHEFGEH-G-GVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAY 95 (418)
T ss_pred hHHHHhcCCCCCCCC-C-CccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Confidence 456788999887643 2 4488999999997654321 01 236799999999999999999999999999
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHh-cccCCcEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCC
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQV-APKIGLEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNP 155 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~-~~~~g~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~np 155 (393)
++++|++++ .++.+++++||+|+++.|.|+++...+... .+..|++++.++..|++++++++++ ++++|++++|+||
T Consensus 96 ~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NP 175 (418)
T PLN02242 96 CTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNP 175 (418)
T ss_pred EEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCC
Confidence 999999998 778888999999999999998765444333 3458999999998899999999988 4999999999999
Q ss_pred cccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCce-EEEEEecChHHHHHHHHHHH
Q psy12791 156 LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVV-MGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 156 tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r-~G~~~~~~~~~~~~~~~~~~ 234 (393)
||.+.++++|.++|+++ |+++|+|++|..+. ..+...++|+++.|+||+++ .+|.+ +||++++ +++++.++....
T Consensus 176 tG~v~dl~~I~~la~~~-gi~livDea~~~~~-~~~~~~g~divv~S~SK~l~-g~g~~~gG~iv~~-~~li~~l~~~~~ 251 (418)
T PLN02242 176 TLTVADIPELARIAHEK-GVTVVVDNTFAPMV-LSPARLGADVVVHSISKFIS-GGADIIAGAVCGP-AELVNSMMDLHH 251 (418)
T ss_pred CCcccCHHHHHHHHHHh-CCEEEEECCCCccC-CCHHHcCCcEEEEeCccccC-CCCCceEEEEEcC-HHHHHHHHHHhh
Confidence 99999999999999999 99999999997543 34555689999999999995 45544 7999987 788888875533
Q ss_pred ----hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc---CCCcceE
Q psy12791 235 ----SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW---SGTSGML 307 (393)
Q Consensus 235 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~---~~~~~~~ 307 (393)
..|...++..++++.+.++++..+++++.+++..+.++|++++ ..+.+|++++++.+.++.+++ .++|+++
T Consensus 252 ~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~ 329 (418)
T PLN02242 252 GALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMANKGYGFGGLL 329 (418)
T ss_pred hhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcccCCCceeEE
Confidence 3566778899999999999999999999999999999999985 368999999999999999988 5899999
Q ss_pred EEEEcCCHHHHHHHHHhcCcc----ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC-hHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESLLIF----RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG-YTDLIAD 382 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~-~~~~i~~ 382 (393)
+|.+. +.+.+.+|+++++.+ ..+.++|+++|+..+|..++|..++.+.....|++++.||||+|.|+ .|++|++
T Consensus 330 sf~l~-~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~d 408 (418)
T PLN02242 330 CLDMD-TEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQ 408 (418)
T ss_pred EEEEC-CHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHH
Confidence 99994 788999999999976 67899999999999999999999999888889999999999999995 9999999
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
|.+||+++
T Consensus 409 l~~al~~~ 416 (418)
T PLN02242 409 FEKALSAM 416 (418)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=362.87 Aligned_cols=366 Identities=36% Similarity=0.635 Sum_probs=317.9
Q ss_pred eeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC-------CCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHH
Q psy12791 14 AVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA 86 (393)
Q Consensus 14 ~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a 86 (393)
.+|++.+.+.. .+..+|++.+++|.....+.. ...+.|+|+++|...+|++++|+++|.+++++++||+.+
T Consensus 13 ~~~~~~~~~~~--~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~A 90 (389)
T PRK05968 13 LITAHDEGNAF--DAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAA 90 (389)
T ss_pred eeecCCCccCC--CCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence 45776665433 467789999999976543211 234779999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHH
Q psy12791 87 V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 87 l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 165 (393)
+ .++.+++++||+|+++.++|++++..+...++..|+++++++..|++++++++ +++++|++++|+|+++.+.|+++|
T Consensus 91 i~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i 169 (389)
T PRK05968 91 ISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAAL 169 (389)
T ss_pred HHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHH
Confidence 8 77777899999999999999998888888888899999999998999999988 579999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-hcCCCCCHHH
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-SMGVVPSPFD 244 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 244 (393)
.++|+++ |+++|+|++|+.+....+...+.|+++.|+||+++|+.++++|+++++ ++++++++.... ..+...++.+
T Consensus 170 ~~la~~~-gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~-~~~~~~l~~~~~~~~g~~~~~~~ 247 (389)
T PRK05968 170 AALAKRH-GVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGS-KEHIARINAEAYPYLGAKLSPFE 247 (389)
T ss_pred HHHHHHc-CCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEEC-HHHHHHHHHHHHHhCCCCCChHH
Confidence 9999999 999999999998776667778899999999999987777889999976 788888775443 4677788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHh
Q psy12791 245 CWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLES 324 (393)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
++++.++++++..+++++.++++.+.++|+.+|.+..+.+|++++++. +.+.+++++++|.++ +.....+|+++
T Consensus 248 A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~-----~~~~g~g~~~sf~~~-~~~~~~~f~~~ 321 (389)
T PRK05968 248 AWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP-----AGLSGTSGLFSFIFR-EGIDVRAFADA 321 (389)
T ss_pred HHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH-----HhCCCCceEEEEEEC-CHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887763 345678899999995 35578999999
Q ss_pred cCccccccccCCccccccCcccccCCC-CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKS-IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~-~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
|+.++++.++|+.+|+++ |..++|.. .+.+.....|++++.||+|+|.|++++++++|.+||+++.
T Consensus 322 L~~~~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~~ 388 (389)
T PRK05968 322 LKLFRLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAAS 388 (389)
T ss_pred CCccEEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998 77777776 4466777789999999999999999999999999998764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=301.15 Aligned_cols=312 Identities=20% Similarity=0.240 Sum_probs=239.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC-CC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE-AK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~-~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
+++| ++|+||++||+.+...+... ...+.+||++...++++++|++++ .+ +.|++++|+++ | ..+..++.+|
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~---~~~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~g 99 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAA---LDKLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPG 99 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCC
Confidence 5778 99999999998887766554 235788899999999999999999 66 79999999999 5 6667889999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH- 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~- 172 (393)
|.|+++.|+|+ +|...++..|++++.++.. |++.+.+.+.+++++|++||||||||..++.++|.+++...
T Consensus 100 d~vl~~~Ptf~----~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~ 175 (356)
T COG0079 100 DTVLIPEPTFS----MYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALP 175 (356)
T ss_pred CEEEEcCCChH----HHHHHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence 99999999998 6888999999999999983 78888888888899999999999999999999999999975
Q ss_pred CCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
.+.+||+||||.++...... ...+.++++||||.| |++|+|+||++++ +++++.+++.+..|..+ ...+.++
T Consensus 176 ~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~-~~~i~~l~~vr~p~~v~--~~a~~aa 251 (356)
T COG0079 176 EGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIAN-PELIAALNKVRPPFNVS--SPALAAA 251 (356)
T ss_pred CCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCC-HHHHHHHHHhcCCCCCC--HHHHHHH
Confidence 26799999999997763222 235589999999999 7999999999987 99999999988876543 3333333
Q ss_pred Hhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 249 TRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 249 ~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
...+ +.+...+++..+.++++.+.|+.++ +..+ +|+ ..+++.+.++ +.+ ...+.+.|
T Consensus 252 ~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v-~pS----------------~aNFvlv~~~-~~~-~~~l~~~L 311 (356)
T COG0079 252 IAALRDADYLEESVERIREERERLYAALKALG-LFGV-FPS----------------QANFVLVRVP-DAE-AAALAEAL 311 (356)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCee-cCC----------------CCcEEEEECC-Ccc-HHHHHHHH
Confidence 3333 3355567777788899999998776 4322 333 2578888884 323 44555555
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...++.+...+. .+..++++|+|++..... +++.++|+++
T Consensus 312 ~~~giivR~~~~----------------------~~~~~~~lRitvgt~een---~~ll~AL~~~ 351 (356)
T COG0079 312 LKKGILVRDCSS----------------------VGLLPGYLRITVGTPEEN---DRLLAALREV 351 (356)
T ss_pred HHCCEEEEeCCC----------------------CCCCCCeEEEEeCCHHHH---HHHHHHHHHH
Confidence 444444433211 012368999999755332 5666666554
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=280.95 Aligned_cols=301 Identities=17% Similarity=0.220 Sum_probs=218.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC-
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG- 97 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g- 97 (393)
..++ ++|+||+++++... ....++||++...+|++++|+++|.+ ++|++|+|+++ + .++.+++++|
T Consensus 29 ~~~~l~~Nenp~~~~~~~~---------~~~~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~ 99 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT---------QQTLNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGK 99 (351)
T ss_pred CceEecCCCCCCCCChhhc---------ccccccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCC
Confidence 3466 89999999987531 12366788888899999999999987 79999999987 6 6666778887
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|.|+++.|+|+ .|...++..|++++.++.+ |++++++.+ +++++|+++|||||||.+++.+++.++++..
T Consensus 100 ~~vli~~P~y~----~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~ 174 (351)
T PRK01688 100 DAILYCPPTYG----MYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELT 174 (351)
T ss_pred CEEEEcCCCHH----HHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 89999999998 5788888999999998874 678888887 5899999999999999999999888888754
Q ss_pred -CCcEEEEeCccCcccccCCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 173 -PDILLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 173 -~~~~livDea~~~~~~~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++++||+||+|.++...... ..++.++++||||++ |++|+|+||++++ +++++.++.....+. .+...+.
T Consensus 175 ~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~-glaGlRiGy~i~~-~~~i~~l~~~~~~~~--v~~~~~~ 250 (351)
T PRK01688 175 RGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAF-ALAGLRCGFTLAN-EEVINLLLKVIAPYP--LSTPVAD 250 (351)
T ss_pred CCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhh-cCHHHHHhHHhCC-HHHHHHHHhccCCCC--CCHHHHH
Confidence 26799999999987532111 135779999999999 7999999999987 888888876554433 2333333
Q ss_pred HHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 247 LVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 247 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
.+...++ .+...++...++++.+.+.|+.++++..+ .|. .+.++++.+. +. +.+
T Consensus 251 ~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~ps----------------~~nfi~~~~~-~~---~~l 309 (351)
T PRK01688 251 IAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQV-FDS----------------ETNYILARFT-AS---SAV 309 (351)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCC----------------CCcEEEEEcC-CH---HHH
Confidence 3333333 23344555667778888888877654322 232 2567888884 32 334
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.+.|...++.+..++.+ + |. ++++|+|++ +.++.+.+.++|
T Consensus 310 ~~~L~~~gi~vr~~~~~-----~----------------~~-~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 310 FKSLWDQGIILRDQNKQ-----P----------------GL-SNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred HHHHHHCCeEEEECCCc-----C----------------CC-CCeEEEeCC---CHHHHHHHHHhh
Confidence 44444345544433211 0 11 579999999 456677877776
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=280.88 Aligned_cols=314 Identities=17% Similarity=0.201 Sum_probs=226.9
Q ss_pred CCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh
Q psy12791 18 GSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL 93 (393)
Q Consensus 18 g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~ 93 (393)
|....++++ +.|+||+++++.+.+++... ....+|+++...+||+++|++++.+ ++|++|+|+++ + .++..+
T Consensus 48 ~~~~~~~i~l~~n~~p~~~~~~v~~a~~~~----~~~~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~ 123 (380)
T PLN03026 48 GRKPEDIVKLDANENPYGPPPEVLEALGNM----KFPYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV 123 (380)
T ss_pred CCCccceEEccCCCCCCCCCHHHHHHHHhh----HhhccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh
Confidence 444567788 89999999998876655321 2234567788899999999999977 78999999887 6 556677
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhc-CCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
+++||+|++++|+|+ .|...++..|++++.++.+ |++++++.+ .+++++|++++||||||.+++.+++.+
T Consensus 124 ~~~gd~Vlv~~P~y~----~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~ 199 (380)
T PLN03026 124 LDPGDKIIDCPPTFG----MYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLK 199 (380)
T ss_pred cCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 899999999999997 4777778899999998774 688998888 678999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccC-CC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQK-SL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~-~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393)
+++. .+++|+||+|..+.... .. ..++.++++||||.+ |++|+|+||++++ +++++.+......+ ..+.
T Consensus 200 l~~~--~~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~-glaGlRiGy~~~~-~~~i~~l~~~~~~~--~~~~ 273 (380)
T PLN03026 200 ILEL--PILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRA-GLAGLRVGYGAFP-LSIIEYLWRAKQPY--NVSV 273 (380)
T ss_pred HHhc--CCEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhh-cCccccceeeecC-HHHHHHHHHhcCCC--CCCH
Confidence 9975 48999999998765421 11 135679999999999 7999999999997 88888887665433 2344
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 243 FDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
..+..+...++. +...++...+++..+.+.|+.++.+. + .|. .+.++++.+++. ....
T Consensus 274 ~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~p~----------------~~~f~~~~~~~~-~~~~ 334 (380)
T PLN03026 274 AAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLE-P-YPS----------------DANFILCRVTSG-RDAK 334 (380)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCe-E-CCC----------------CCeEEEEECCCC-CCHH
Confidence 444444444433 33345555667777888888764432 2 232 256788888421 1233
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.+.+...++.+..+.. + ..++++|||++ +.++.+.+.++|+++
T Consensus 335 ~~~~~l~~~gI~v~~~~~------~-----------------~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 335 KLKEDLAKMGVMVRHYNS------K-----------------ELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred HHHHHHHHCCeEEEECCC------C-----------------CCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 455544444555543311 0 01579999998 344567777777654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=273.68 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=188.6
Q ss_pred CCCCCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEE
Q psy12791 3 FLPQDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLC 79 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~ 79 (393)
.+.|+......+...|..+++++| |+|+||+++++.... ...+.+||++. .+|++++|+++|.+ ++|+
T Consensus 5 ~~~hg~~~~~~~~~~~~~~~~~i~ls~Nenp~~~~~~~~~--------~~~~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~ 75 (339)
T PRK06959 5 PIAHGGNLHEAARRYGIPYDAWLDLSTGINPHGYPVPPVP--------ADAWRRLPEDD-DGLAACAARYYGAPDAAHVL 75 (339)
T ss_pred CcCCCchHHHHHHHcCCChhhhceeccCCCCCCCCCCCCC--------HHHHHhCCCch-HHHHHHHHHHhCCCCcccEE
Confidence 456777766666667777788899 999999998832211 13466788887 99999999999985 6999
Q ss_pred eccHHHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+|+|+++ +.++..++++|| |++++|+|+ .|...++..|++++.++.++ + .+.+.+++++++|||||||.
T Consensus 76 i~~Gs~e~i~~l~~~~~~g~-v~v~~P~y~----~y~~~~~~~g~~~~~v~~~~-~----~~~~~~~~v~l~nPnNPTG~ 145 (339)
T PRK06959 76 PVAGSQAAIRALPALLPRGR-VGIAPLAYS----EYAPAFARHGHRVVPLDEAA-D----TLPAALTHLIVVNPNNPTAE 145 (339)
T ss_pred ECcCHHHHHHHHHHhcCCCe-EEEcCCCcH----HHHHHHHHCCCEEEeecccc-h----hccccCCEEEEeCCCCCCCC
Confidence 9999998 555556678876 888999998 58888899999999998754 2 23345689999999999999
Q ss_pred ccCHHHHHHHH---HhCCCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 159 VFDVKAISAVV---KQHPDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 159 ~~~~~~l~~l~---~~~~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++.+++.+++ +++ +.++|+||+|.++....++ ...+.++++||||.+ |+||+|+||++++ +++++.++.
T Consensus 146 ~~s~~~l~~l~~~~~~~-~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~-~~li~~l~~ 222 (339)
T PRK06959 146 RLPAARLLRWHAQLAAR-GGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAA-PALLAALRD 222 (339)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcchheEEEecC-HHHHHHHHH
Confidence 99977777664 467 8999999999986532221 224569999999999 7999999999997 889998887
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
....+. .+...+..+...++. ....++...+++..+.+.|+.+
T Consensus 223 ~~~~~~--vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 268 (339)
T PRK06959 223 ALGAWT--VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH 268 (339)
T ss_pred hcCCCC--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 665433 344455555555543 2334555666777888888764
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=277.18 Aligned_cols=309 Identities=19% Similarity=0.198 Sum_probs=224.2
Q ss_pred CCCCCCCCCCCCcc-CCeeeeCCCCCCCCCc-cccCCCCchHHHHHHHHHHHhC----C---C-cEEEeccHHHH-H-HH
Q psy12791 22 DQWRSQCVIPPIIL-STTFKQNTPGQPPQGF-EYSRSNNPTRRNLERCIASLEE----A---K-HGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-~y~~~~~~~~~~lr~~la~~~~----~---~-~~i~~~~G~~a-l-~~ 89 (393)
.++++-+..+|-.+ |..+.++....+.... .|+ +..+..+||+++|+++. . + +.|++|+|+++ + .+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~--~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~ 105 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYT--PSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLA 105 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHH
Confidence 45666445555444 4445555444333332 343 67889999999998753 1 1 45999999876 7 78
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-----C---CHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-----R---KIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-----~---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
+.+++++||+|++++|.|+. |....+..|++++.+++ + |++++++++.++||+|++++||||||.+++
T Consensus 106 ~~a~~~pGDeVlip~P~Y~~----y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~ 181 (393)
T COG0436 106 FLALLNPGDEVLIPDPGYPS----YEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYS 181 (393)
T ss_pred HHHhcCCCCEEEEeCCCCcC----HHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCC
Confidence 88999999999999999995 78888999999999985 2 699999999999999999999999999998
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcccccC--CCC---C----cCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQK--SLP---W----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~---~----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+++|+++|++| +++||.||+|..+.++. +.. . ...|++.||||.+ +++|+|+||++++++++++.+
T Consensus 182 ~~~l~~i~~~a~~~-~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~~~~ 259 (393)
T COG0436 182 KEELKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELIAAL 259 (393)
T ss_pred HHHHHHHHHHHHHc-CeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHHHHH
Confidence 77889999999 99999999999977653 111 1 2469999999999 699999999999877888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccC------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCC
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLK------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 303 (393)
...+.....+.+...+..+...++ .....++.+.+++..+.+.|.+.+++.....|. .
T Consensus 260 ~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~----------------G 323 (393)
T COG0436 260 RKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE----------------G 323 (393)
T ss_pred HHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC----------------e
Confidence 866666665555555554444443 233334567788889999999888776444343 1
Q ss_pred cceEEEEEcCCHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC
Q psy12791 304 SGMLSFYVNGGAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG 375 (393)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~ 375 (393)
+.++++.++.. .....|... |+..++++.+|..|... ..+++||+|+....
T Consensus 324 a~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v~PG~~Fg~~--------------------~g~~~vRis~~~~~ 375 (393)
T COG0436 324 AFYLFPKIPEL-LDSEEFAKKLLEEAGVAVVPGSGFGEP--------------------PGEGYVRLSLATSE 375 (393)
T ss_pred eEEEEeecCCC-CCHHHHHHHHHHhCCEEEecccccCCC--------------------CCCCeEEEEEecCH
Confidence 34577777532 222223222 33446777777665321 12689999998776
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=270.73 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=210.0
Q ss_pred CCCCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEec
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYS 81 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~ 81 (393)
+.|+.+....+...| +++| ++|+||+.+ ...+.+||++.+.+||+++|+++|.+ ++|++|
T Consensus 2 ~~~~~~~~~~~~~~~----~~i~l~~Nenp~~~--------------~~~~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it 63 (332)
T PRK06425 2 RGHGGDVYEASSKYG----RIIDFSANINDFMD--------------IGDISIYPEISYTDIEDQIKIYTQGLKIKVLIG 63 (332)
T ss_pred CCCCCCHHHHHHhcC----CEEEeccccCCCcC--------------hhhcccCcCcCHHHHHHHHHHHhCCCcceEEEC
Confidence 345555444333322 5678 999999941 12356788999999999999999987 789999
Q ss_pred cHHHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 82 SGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 82 ~G~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
+|+++ +..+..++++|+ |++++|+|+ .|...++..|++++.+|.+ |.+.++ ..++++|++++|||||
T Consensus 64 ~Gs~~~l~~~~~~~~~~~-vv~~~P~y~----~y~~~~~~~G~~v~~vp~~~~~~~~~~l~---~~~~k~v~l~nP~NPT 135 (332)
T PRK06425 64 PGLTHFIYRLLSYINVGN-IIIVEPNFN----EYKGYAFTHGIRISALPFNLINNNPEILN---NYNFDLIFIVSPDNPL 135 (332)
T ss_pred CCHHHHHHHHHHHhCCCc-EEEeCCChH----HHHHHHHHcCCeEEEEeCCcccCcHHHHh---hcCCCEEEEeCCCCCc
Confidence 99987 544444677764 777799998 5888899999999999875 333332 2378999999999999
Q ss_pred ccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC--CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHH
Q psy12791 157 MTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK--SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226 (393)
Q Consensus 157 G~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~--~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~ 226 (393)
|.+++ +++|.++|+++ +++||+||+|.++.+.. +. ..++.++++||||.+ |+||+|+||++++ ++++
T Consensus 136 G~~~s~~~~~~l~~~a~~~-~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiGy~v~~-~~li 212 (332)
T PRK06425 136 GNLISRDSLLTISEICRKK-GALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKIL-GIPSLRIGYIATD-DYNM 212 (332)
T ss_pred CCccCHHHHHHHHHHHHHc-CCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhc-CCchhhheeeecC-HHHH
Confidence 99999 56677778889 99999999999876432 11 124679999999999 7999999999997 8888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHh-ccCC-HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 227 ARLKFLQNSMGVVPSPFDCWLVTR-GLKT-LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
+.+......+. .+.....++.. ..+. ....++...+++..+.+.|+.+ ++. +..+. .+
T Consensus 213 ~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~----------------~g 272 (332)
T PRK06425 213 KISRKITEPWS--VCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFR-AAGDP----------------SA 272 (332)
T ss_pred HHHHHcCCCCc--cCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCCC----------------Cc
Confidence 88876443322 22222222221 1112 2234555667777788888765 222 21111 25
Q ss_pred ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
+++|+.++ + ...+.+.+...++.+..|..+.. ..++++|||++.. ++.+.|.
T Consensus 273 ~f~~~~~~-~---~~~~~~~l~~~gi~v~~~~~f~~---------------------~~~~~iRis~~~~---~~~~~l~ 324 (332)
T PRK06425 273 NFITFMIP-D---AHDFYSYLLKNGILVRLLDDYEC---------------------LGEQYIRIAIRRR---SFNIKLV 324 (332)
T ss_pred eEEEEEcC-C---HHHHHHHHHHCCeEEEECCCCCC---------------------CCCCEEEEEeCCH---HHHHHHH
Confidence 78899884 2 23444444434666655543310 1157999999854 3345677
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
++|+++
T Consensus 325 ~al~~~ 330 (332)
T PRK06425 325 NALRNF 330 (332)
T ss_pred HHHHHH
Confidence 776654
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=274.38 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=187.9
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh----C---CC-c-EEEeccHHHH-H-H
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE----E---AK-H-GLCYSSGLGA-V-T 88 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~----~---~~-~-~i~~~~G~~a-l-~ 88 (393)
+.+.+| +.++||+.+++.+...+.+.+.. ....+|++.+..+||+++|+++ | .+ + +|++|+|+++ + .
T Consensus 43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~-~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~ 121 (410)
T PRK06290 43 DMELIDMGVGEPDEMADESVVEVLCEEAKK-PENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAM 121 (410)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-CCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHH
Confidence 445678 88999998887766554332111 1133455678899999999985 3 32 4 7999999886 6 6
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
++..++++||.|+++.|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 122 ~~~~~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s 197 (410)
T PRK06290 122 LPSCFINPGDVTLMTVPGYPV----TGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVAT 197 (410)
T ss_pred HHHHhCCCCCEEEEeCCCCcc----HHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCC
Confidence 667788999999999999984 677788899999999874 678888888778999999999999999999
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcccccC---CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQK---SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~~---~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ +++||+||+|..+.+.. +. ..+.+++++||||.+ |+||+|+||++++ +++++.+.
T Consensus 198 ~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~-~~l~~~l~ 274 (410)
T PRK06290 198 KEFYEEVVDFAKEN-NIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGN-ELIVKAFA 274 (410)
T ss_pred HHHHHHHHHHHHHc-CeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeC-HHHHHHHH
Confidence 57778889999 99999999999865431 11 124569999999999 6999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.....+....+...+..+...++. +...++++.+++..+.+.|+..
T Consensus 275 ~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 323 (410)
T PRK06290 275 TVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV 323 (410)
T ss_pred HHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 776655544444444444444433 3344556667777888888765
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=273.18 Aligned_cols=278 Identities=18% Similarity=0.216 Sum_probs=204.2
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.+.++ +.|+||+++++.+.+++.+.... ..+|++.+..+||++||++++.+ ++|++|+|+++ + .++.+++++|
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~---~~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~g 105 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWLD---HALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAG 105 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHHh---cCcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCC
Confidence 45677 89999999998887766543221 23567788899999999999987 79999999887 6 6667788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH- 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~- 172 (393)
|.|+++.|+|+ .|...++..|++++.++.+ |++++++.+.++++++++++||||||.+++.+++.++++..
T Consensus 106 d~vlv~~P~y~----~~~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~ 181 (366)
T PRK01533 106 DNIVTAGATFP----QYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGIS 181 (366)
T ss_pred CEEEEcCCcHH----HHHHHHHHcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCC
Confidence 99999999998 4778888999999999875 78999998888899999999999999999977777776642
Q ss_pred CCcEEEEeCccCcccccC----CC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 173 PDILLVLDNTFLTAYYQK----SL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~----~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
++.++|+||+|.++.... .+ ..++.++++||||.+ |+||+|+||++++ +++++.++.... ....+...
T Consensus 182 ~~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~i~~-~~~~~~l~~~~~--~~~~~~~~ 257 (366)
T PRK01533 182 ENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAY-GLASFRVGYAVGH-EELIEKLNVVRL--PFNVSSLA 257 (366)
T ss_pred CCCEEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHh-cChHHHHhHHhCC-HHHHHHHHHhcC--CCCcCHHH
Confidence 245788899998754321 11 124679999999999 7999999999997 889998876653 23456666
Q ss_pred HHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 245 CWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 245 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
+.++...++.. ...++...++...+.++++.+ ++. +..+ .++++++.++ +. ..+
T Consensus 258 q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~-~~~~-----------------~~nf~~~~~~-~~---~~~ 314 (366)
T PRK01533 258 QKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIP-FYQS-----------------QTNFIFLPVE-NG---GEI 314 (366)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-cCCC-----------------cCcEEEEeCC-CH---HHH
Confidence 66666666542 223334445566666777654 221 1111 2678999884 32 344
Q ss_pred HHhcCccccccc
Q psy12791 322 LESLLIFRCAES 333 (393)
Q Consensus 322 ~~~l~~~~~~~~ 333 (393)
.+++...++.+.
T Consensus 315 ~~~l~~~GI~Vr 326 (366)
T PRK01533 315 YEACAHAGFIIR 326 (366)
T ss_pred HHHHHHCCcEEc
Confidence 555544454443
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=271.01 Aligned_cols=328 Identities=19% Similarity=0.222 Sum_probs=227.1
Q ss_pred CCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH
Q psy12791 6 QDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG 83 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G 83 (393)
|+.+....+...|....++++ +.|+||+++++.+.+++.+.+.. ..+|+++...+||+++|++++.+ ++|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~---~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G 80 (356)
T PRK08056 4 HGGNIREAATVLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDC---AERYPDVEYRHLHQALARHHQVPASWILAGNG 80 (356)
T ss_pred CCccHHHHHHHhCCChhhEEEeccccCCCCCCHHHHHHHHHHHHh---cccCcCccHHHHHHHHHHHhCcChhhEEECCC
Confidence 455555555666777777888 89999999998887766543222 33566677899999999999986 78999999
Q ss_pred HHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CH-HHHHhhcCCCCcEEEEecCCCCc
Q psy12791 84 LGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KI-ENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 84 ~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~-~~l~~~l~~~~~~v~l~~p~npt 156 (393)
+++ +..+...+.+|+ ++++.|+|. .|...++..|++++.++.+ ++ +++.+.+.+++++|++++|||||
T Consensus 81 a~~~l~~~~~~l~~g~-viv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NPT 155 (356)
T PRK08056 81 ETESIFAVVSGLKPRR-AMIVTPGFA----EYRRALQQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNPT 155 (356)
T ss_pred HHHHHHHHHHHhCCCC-EEEeCCCcH----HHHHHHHHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCCC
Confidence 887 544433447776 677889987 4777788999999999864 22 35556667789999999999999
Q ss_pred ccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----C-C-CCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 157 MTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S-L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 157 G~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~-~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
|.+++ +++|.++|+++ ++++|+||+|.++..+. + + ..+++++++||||++ |++|+|+||++++++++.+
T Consensus 156 G~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~~~~~ 233 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSL-NIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY-AIPGLRLGYLVNSDDAAVA 233 (356)
T ss_pred CCCCCHHHHHHHHHHHHhc-CCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc-cCcchhheeeecCCHHHHH
Confidence 99999 77788899999 99999999998765322 1 1 134679999999999 6999999999986567777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 228 RLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
.++.... ....+...+..+...++. ....++...++++.+.+.|+.++++. +. +. .+
T Consensus 234 ~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~-~~----------------~~ 293 (356)
T PRK08056 234 RMRRQQM--PWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLT-VW-PG----------------RA 293 (356)
T ss_pred HHHHhCC--CCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-Ec-CC----------------CC
Confidence 7764332 223344444444444432 22334556677778888887765543 22 21 25
Q ss_pred ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
.++|+.++.+ ...+.+.+...++.+..|..+. +..+++||+|++. .++-+.|.
T Consensus 294 ~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~~iRis~~~---~~~~~~l~ 346 (356)
T PRK08056 294 NYLFLRCERP---DIDLQRALLTQRILIRSCANYP---------------------GLDSRYYRVAIRS---AAENERLL 346 (356)
T ss_pred cEEEEEcCCC---hHHHHHHHHHCCeEEEECCCCC---------------------CCCCCEEEEEEcC---HHHHHHHH
Confidence 6788888422 2344455444466665554321 1125799999985 23345666
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
++|+++
T Consensus 347 ~~l~~~ 352 (356)
T PRK08056 347 AALRNV 352 (356)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=273.63 Aligned_cols=318 Identities=14% Similarity=0.132 Sum_probs=219.3
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC------C-C-cEEEeccHHHH-H-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE------A-K-HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~------~-~-~~i~~~~G~~a-l-~~~ 90 (393)
.+.+| +.+.+++.+++.+.+.+.........|+ |+..+..+||+++|++++ . + ++|++|+|+++ + .++
T Consensus 32 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~-y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~ 110 (399)
T PRK07681 32 HKMIDLSIGNPDMPPADFVREEMVHTANQKESYG-YTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLP 110 (399)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCC-CCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHH
Confidence 35667 7778887777666555433222122232 234678899999999874 2 2 68999999886 6 666
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
.+++++||.|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 111 ~~~~~~Gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~ 186 (399)
T PRK07681 111 MVYANPGDIILVPDPGYTA----YETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHED 186 (399)
T ss_pred HHhCCCCCEEEECCCCccc----hHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHH
Confidence 7788999999999999984 777788999999999874 578888888778999999999999999999
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|.++|+++ +++||+||+|.++.+.. ++ .....++++||||.+ |++|+|+||++++ +++++.+..
T Consensus 187 ~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~-~~l~~~~~~ 263 (399)
T PRK07681 187 FFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGN-EEIVRALTQ 263 (399)
T ss_pred HHHHHHHHHHHc-CeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc-CCccceeEEEecC-HHHHHHHHH
Confidence 77788889999 99999999999865432 11 113569999999999 6999999999987 889888877
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.........+...+..+...++. +.+.++.+.++...+.+.|+.+ ++. +..|. .+.++
T Consensus 264 ~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~----------------~g~f~ 325 (399)
T PRK07681 264 FKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWN-VDKPA----------------GSMFV 325 (399)
T ss_pred HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC----------------eeeEE
Confidence 66544444555555544444433 3334455566677778888765 332 22222 25678
Q ss_pred EEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
|+.+++. .....+.+.+ +..++.+.+|..+.. ..++++|+|++. +++.++...+.
T Consensus 326 ~~~l~~~-~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~--~~~~~~~~l~~ 381 (399)
T PRK07681 326 WAEIPKG-WTSLSFAYALMDRANVVVTPGHAFGP---------------------HGEGFVRIALVQ--DEEVLQQAVEN 381 (399)
T ss_pred EEECCCC-CCHHHHHHHHHHhCCEEEeCChhhCc---------------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence 8888531 1223344443 224566666544310 014799999983 34444444455
Q ss_pred HHH
Q psy12791 387 LRK 389 (393)
Q Consensus 387 l~~ 389 (393)
|++
T Consensus 382 l~~ 384 (399)
T PRK07681 382 IRN 384 (399)
T ss_pred HHH
Confidence 544
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=269.09 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=214.8
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC-
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG- 97 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g- 97 (393)
+.++ +.|+||+++++.+ . ...+.+||++...+||+++|+++|++ ++|++|+|+++ + .++..++++|
T Consensus 32 ~~~~l~~ne~~~~~~~~~------~---~~~~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~ 102 (354)
T PRK04635 32 GDIWINANESPFNNEYKL------D---LARLNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQ 102 (354)
T ss_pred CcEEeeCCCCCCCCChhh------h---hHHhccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCC
Confidence 4466 8999999998543 1 12466778888899999999999987 79999999987 6 6666778888
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|+|+++.|+|. .|...++..|++++.+|.+ |++.++ .+ +++++|+++|||||||.+++.+++.++++..
T Consensus 103 d~vlv~~P~y~----~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~ 176 (354)
T PRK04635 103 DSIACFGPTYG----MYAISAETFNVGVKALPLTADYQLPLDYIE-QL-DGAKLVFICNPNNPTGTVIDRADIEQLIEMT 176 (354)
T ss_pred CeEEEcCCChH----HHHHHHHHcCCEEEEEecCCCCCCCHHHHH-hc-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhC
Confidence 89999999998 4777788899999999875 566665 33 5799999999999999999999999999885
Q ss_pred CCcEEEEeCccCcccccCCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
++++||+||+|.++...... ...+.++++||||++ |++|+|+||++++ +++++.+......++ .+...+..
T Consensus 177 ~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~-~l~GlRlG~~i~~-~~~~~~l~~~~~~~~--~~~~~~~~ 252 (354)
T PRK04635 177 PDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAF-ALAGARCGFTLAN-EELIEILMRVIAPYP--VPLPVSEI 252 (354)
T ss_pred CCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHh-hhhHHHHhhhhCC-HHHHHHHHhhcCCCC--CCHHHHHH
Confidence 47999999999876532111 124568999999999 7999999999997 888888765443322 23333333
Q ss_pred HHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 248 VTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 248 ~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
+...+. .+...++...++++.+.+.|+.++.+. + .+. .+.++++.++ +.++ +.
T Consensus 253 a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~----------------~g~f~~~~~~-~~~~---~~ 310 (354)
T PRK04635 253 ATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAK-V-LEG----------------NGNYVLAKFD-DVDA---VF 310 (354)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-E-CCC----------------CCcEEEEECC-CHHH---HH
Confidence 333332 233344556667778888888765432 2 222 1567888884 3333 33
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+...++.+..++. + ..++++|+|++ +.++++++.++|++.
T Consensus 311 ~~l~~~gv~v~~~~~------~-----------------~~~~~lRis~~---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 311 KALWDAGIVARAYKD------P-----------------RLANCIRFSFS---NRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHCCEEEEECCC------C-----------------CCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 333333444432110 0 01579999986 567788999888764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=265.59 Aligned_cols=313 Identities=21% Similarity=0.187 Sum_probs=213.4
Q ss_pred CCCCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEecc
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS 82 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~ 82 (393)
|.|++.+...+...|..+.++++ ++|+||+++++.. +.. ....+||++. .+||++||++++. ++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~l~~ne~p~~~~~~~---~~~-----~~~~~yp~~~-~~Lr~~ia~~~~~-~~I~it~ 71 (330)
T PRK05664 2 LEHGGRLRRAAQRYGIPLADWLDLSTGIAPWPWPVPA---IPA-----DAWARLPETD-DGLEAAARAYYGA-PQLLPVA 71 (330)
T ss_pred CCCCchHHHHHHHcCCCHHHheeecCCcCCCCCCCcc---cCH-----HHHHhCCCCh-HHHHHHHHHHhCC-CCEEECc
Confidence 34566665555556776667788 9999999887431 111 2245566655 8999999999996 5799999
Q ss_pred HHHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|+++ |..+. .+.+||+|++++|+|+ .+...++..|++++.++.++ +++.+ ++++++++++||||||.+++
T Consensus 72 Gs~~al~~~~-~~~~gd~v~v~~P~y~----~~~~~~~~~g~~~~~v~~~~---~~~~~-~~~~~v~l~nP~NPTG~~~s 142 (330)
T PRK05664 72 GSQAAIQALP-RLRAPGRVGVLSPCYA----EHAHAWRRAGHQVRELDEAE---VEAAL-DSLDVLVVVNPNNPTGRRFD 142 (330)
T ss_pred CHHHHHHHHH-HccCCCEEEEcCCChH----HHHHHHHHcCCeEEEechhh---Hhhhh-cCCCEEEEeCCcCCCCCccC
Confidence 9887 54333 4689999999999998 57888899999999998754 44444 36889999999999999999
Q ss_pred HH---HHHHHHHhCCCcEEEEeCccCcccccCC---CC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 162 VK---AISAVVKQHPDILLVLDNTFLTAYYQKS---LP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 ~~---~l~~l~~~~~~~~livDea~~~~~~~~~---~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
.+ +|.++|+++ +++||+||+|.++....+ +. .++.++++||||.+ |+||+|+||++++ +++++.+.....
T Consensus 143 ~~~l~~l~~~~~~~-~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRiG~~v~~-~~l~~~~~~~~~ 219 (330)
T PRK05664 143 PARLLAWHARLAAR-GGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGARLGFVLAE-PALLRALAELLG 219 (330)
T ss_pred HHHHHHHHHHHHhc-CCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcceEEEEeC-HHHHHHHHHhcC
Confidence 55 455556788 999999999986542111 11 23569999999999 7999999999997 888888876544
Q ss_pred hcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
.+ ..+...+..+...++. ....++...++++.+.+.|+.+. + .+. .+...++|+.+
T Consensus 220 ~~--~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~----~~~--------------~~~~~f~~~~~ 278 (330)
T PRK05664 220 PW--TVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG-L----TPA--------------GGCALFQWVRT 278 (330)
T ss_pred CC--CCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC-C----ccc--------------CCcceEEEEec
Confidence 32 2334444444444433 23345555667777888887642 1 011 12235677777
Q ss_pred cCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+ +. +.+.+.+...++.+... . .++++|||++. +.+..+++.++|+++.
T Consensus 279 ~-~~---~~~~~~l~~~gi~v~~f---~-----------------------~~~~iRis~~~--~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 279 E-DA---AALHEFLARRGILTRLF---E-----------------------QPASLRFGLPA--DEADWARLDQALLAYR 326 (330)
T ss_pred C-CH---HHHHHHHHHCCeEEEEC---C-----------------------CCCeEEEECCC--CHHHHHHHHHHHHHHH
Confidence 3 33 34444444434444210 0 14689999995 3445677777777664
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=271.78 Aligned_cols=313 Identities=16% Similarity=0.195 Sum_probs=228.3
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHHhcC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTHLLS 95 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~~~~ 95 (393)
..++++ +.++||+++++.+.+.+.+.+.. ..+..|++++..+||+++|++++.+ ++|++++|+++ + .++..+++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~ 103 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAE-VALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAK 103 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcC
Confidence 456777 89999999999988877654321 2244556677899999999999975 48999999987 5 55566789
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
+||+|++++|+|. .+...++..|++++.++.+ |++++++.+. .++++|++++||||||.+++.+++.+++
T Consensus 104 ~gd~vlv~~P~y~----~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~ 179 (356)
T PRK04870 104 PGATVLAPEPGFV----MYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERII 179 (356)
T ss_pred CCCEEEECCCCHH----HHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 9999999999998 4777888999999999875 6889998885 4799999999999999999999999999
Q ss_pred HhCCCcEEEEeCccCcccccCC---C-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 170 KQHPDILLVLDNTFLTAYYQKS---L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~~~---~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+.. ++++|+||+|..+..... + ..++.++++|||| + |++|+|+||++++ +++++.++.....+ ..+...+
T Consensus 180 ~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~-~~~i~~~~~~~~~~--~~~~~~q 253 (356)
T PRK04870 180 EAA-PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGH-PAWIAELDKVRPPY--NVNVLTQ 253 (356)
T ss_pred HHC-CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCC-HHHHHHHHHccCCC--cCCHHHH
Confidence 988 889999999987543211 1 1245799999999 7 7999999999997 88888877654322 3444444
Q ss_pred HHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 246 WLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 246 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
..+...++. +...+++..+++..+.+.|+.++++. + .|. .++++|+.++ +. ..+.
T Consensus 254 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~----------------~~~~~~~~~~-~~---~~~~ 311 (356)
T PRK04870 254 ATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVT-V-FPS----------------AANFILVRVP-DA---AAVF 311 (356)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC----------------CCeEEEEECC-CH---HHHH
Confidence 433333332 34445566677777888888766542 2 222 2568899884 33 3444
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+...++.+..|..+. +..++++|+|++ +.++.+.|.++|+++
T Consensus 312 ~~l~~~gI~v~~~~~f~---------------------~~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 312 DGLKTRGVLVKNLSGMH---------------------PLLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred HHHHHCCEEEEECCCCC---------------------CCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 55555566655543321 012579999998 456677888888764
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=265.74 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=216.3
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC-C
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG-D 98 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g-d 98 (393)
.++ ++|+||+++++.. .....+|+++...+||+++|++++.+ ++|++++|+++ + .++..++.+| |
T Consensus 33 ~~~~~~ne~~~~~~~~~----------~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~ 102 (364)
T PRK04781 33 DVWLNANESAWANPADP----------DASTRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRD 102 (364)
T ss_pred CEEeeCCCCCCCCChhh----------cchhccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCC
Confidence 345 7999999887531 11245677777899999999999987 78999999886 6 6666777888 7
Q ss_pred eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhh-cCCCCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKY-IKPNTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~-l~~~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
.|++++|+|+ .+...++..|++++.++.+ |++++.+. ..+++++|++++||||||.+++.+++.+++
T Consensus 103 ~vlv~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~ 178 (364)
T PRK04781 103 AVLVTPPVFG----MYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERAL 178 (364)
T ss_pred eEEEcCCChH----HHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHH
Confidence 9999999987 4666778889999999862 45666544 356799999999999999999998888888
Q ss_pred HhC-CCcEEEEeCccCcccccCC-C----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHH
Q psy12791 170 KQH-PDILLVLDNTFLTAYYQKS-L----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243 (393)
Q Consensus 170 ~~~-~~~~livDea~~~~~~~~~-~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
+.. ++++||+||+|.++..... . ..++.++++||||.+ |+||+|+||++++ +++++.++.....++ .+..
T Consensus 179 ~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~-gl~GlRvGy~v~~-~~l~~~l~~~~~~~~--~~~~ 254 (364)
T PRK04781 179 QALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAH-ALAAARIGSLIAN-AELIAVLRRCQAPYP--VPTP 254 (364)
T ss_pred HhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhc-ccccceeeeeeCC-HHHHHHHHhccCCCC--CCHH
Confidence 763 2789999999998754221 1 124679999999999 7999999999997 899998887665443 2333
Q ss_pred HHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 244 DCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 244 ~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
.+..+...++. ..+.+++..++++.+.+.|+.++++..+ .|. .+.++|+.++ +.
T Consensus 255 ~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~----------------~g~f~~~~~~-~~--- 313 (364)
T PRK04781 255 CAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRV-YPS----------------QGNFLLVRFD-DA--- 313 (364)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCC----------------CCcEEEEEcC-CH---
Confidence 33333333322 3344555667778888888877654323 232 2678899884 33
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+.+.+...++.+..|..+. + .++++||+++. .++-+++.++|+++.
T Consensus 314 ~~~~~~l~~~gI~v~~~~~~~---------------------~-~~~~~Ris~~~---~~~~~~l~~al~~~~ 361 (364)
T PRK04781 314 EAAFQALLAAGVVVRDQRAAP---------------------R-LSDALRITLGT---PEQNDRVLAALQRTQ 361 (364)
T ss_pred HHHHHHHHHCCeEEeeCCCCC---------------------C-CCCeEEEeCCC---HHHHHHHHHHHHHHH
Confidence 344555555566665543210 1 15799999985 344467777776553
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=270.59 Aligned_cols=307 Identities=16% Similarity=0.140 Sum_probs=212.8
Q ss_pred CCCCCC-C-CCCCCCccCCeeeeCCCCCCCCCccccCCC-CchHHHHHHHHHHHh----CC---C-cEEEeccHHHH-H-
Q psy12791 21 PDQWRS-Q-CVIPPIILSTTFKQNTPGQPPQGFEYSRSN-NPTRRNLERCIASLE----EA---K-HGLCYSSGLGA-V- 87 (393)
Q Consensus 21 ~~~~~~-~-~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~lr~~la~~~----~~---~-~~i~~~~G~~a-l- 87 (393)
+.+.++ + .+.+|+.+++.+.+.+.+.+... ....|+ ..+..+||+++|+++ |. + ++|++|+|+++ +
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERG-GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcC-CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 445555 3 45556666666665544332211 112333 346778888887765 64 2 67999999776 7
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----------CHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----------KIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----------d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
.++..++++||+|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||
T Consensus 117 ~~~~~l~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG 192 (405)
T PRK06207 117 LAVAATVARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAG 192 (405)
T ss_pred HHHHHhcCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCC
Confidence 6777789999999999999984 667788899999888753 68899998888899999999999999
Q ss_pred cccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHH
Q psy12791 158 TVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL 225 (393)
Q Consensus 158 ~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~ 225 (393)
.+++ +++|.++|+++ +++||+||+|..+.+.. ++ ..++.++++||||.+ |+||+|+||++++ +++
T Consensus 193 ~~~s~e~l~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~-~~l 269 (405)
T PRK06207 193 VVYSAEEIAQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGS-PAI 269 (405)
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcC-HHH
Confidence 9998 67788889999 99999999999865421 11 123559999999999 6999999999987 889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 226 QARLKFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
++++......+....+...+..+...++. +..+++...+++..+.+.|+.++++. +..|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~--------------- 333 (405)
T PRK06207 270 IDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVF-VRAPQ--------------- 333 (405)
T ss_pred HHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCC---------------
Confidence 99888776655555554444444444432 44456666666777778887654432 22222
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
.+.++|+.++........+.+.+. ..++.+.+|..|.. ..++++|||++.
T Consensus 334 -gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~---------------------~~~~~~Ris~~~ 384 (405)
T PRK06207 334 -AGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSP---------------------HTADSIRLNFSQ 384 (405)
T ss_pred -eeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCC---------------------CCCCeEEEEecC
Confidence 245789988521112344555553 34666666654320 115799999996
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=267.20 Aligned_cols=309 Identities=18% Similarity=0.244 Sum_probs=223.3
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCC
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGD 98 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd 98 (393)
++++ ++|+||+++++.+.+++.+.+. .+..|++.+..++|+++|++++.+ ++|++|+|+++ + .++.+++++||
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~---~~~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd 106 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLD---ELALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGT 106 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHH---HhhcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCC
Confidence 5677 8999999888877766544322 234456778999999999999976 78999999887 6 55667789999
Q ss_pred eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-C
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-P 173 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~ 173 (393)
.|++++|+|+. +...+...|++++.++.+ |++++++.+.++++++++++||||||.+++.++|.++++.. .
T Consensus 107 ~v~~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~ 182 (359)
T PRK03158 107 NTVMAEPTFSQ----YRHNAIIEGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPS 182 (359)
T ss_pred EEEEcCCCHHH----HHHHHHHcCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 99999999984 666777889999999875 78899888888899999999999999999999999998873 2
Q ss_pred CcEEEEeCccCcccccCC--C------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 174 DILLVLDNTFLTAYYQKS--L------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 174 ~~~livDea~~~~~~~~~--~------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
++++|+||+|.++.+... . ..++.++++||||.+ |++|+|+||++++ +++++.++.....+ ..+...+
T Consensus 183 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~-~~~~~~~~~~~~~~--~~~~~~q 258 (359)
T PRK03158 183 HVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAY-GLAALRVGYGIAS-EELIEKLNIARPPF--NTTRIAQ 258 (359)
T ss_pred CcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhh-cCcchhhehhcCC-HHHHHHHHHhcCCC--CCCHHHH
Confidence 899999999987654321 1 124679999999999 7999999999997 88888887655432 3456666
Q ss_pred HHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 246 WLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 246 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
..+...++.. ....+...++...+.+.|+.. ++. + .|. .+.++++.+..+ ...+.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~-~~~----------------~g~~i~~~~~~~---~~~~~ 316 (359)
T PRK03158 259 YAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLF-Y-YPS----------------QTNFIFVDTGRD---ANELF 316 (359)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-e-CCC----------------cCcEEEEECCCC---HHHHH
Confidence 6665555542 222333344555666666654 222 1 222 246788877322 23344
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+...++.+..|..+. .++++||+++ +.++.+.+.++|+++
T Consensus 317 ~~l~~~gv~v~~g~~f~-----------------------~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 317 EALLKKGYIVRSGAALG-----------------------FPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHCCeEEeeCCCCC-----------------------CCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 44443466666554321 1479999988 555667777777764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=268.68 Aligned_cols=280 Identities=16% Similarity=0.208 Sum_probs=199.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CC-cEEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE--------AK-HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~--------~~-~~i~~~~G~~a-l-~~~ 90 (393)
..++ ++|+||+.+++.+.+.+.+.+.......+|++++..+||+++|++++ ++ ++|++|+|+++ + .++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~ 108 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLL 108 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHH
Confidence 3556 89999999998888776543222212345667788999999999987 44 68999999887 6 556
Q ss_pred HHhcCCCC-eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcC----CCCcEEEEecCCCCcccc
Q psy12791 91 THLLSAGD-HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIK----PNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 91 ~~~~~~gd-~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~----~~~~~v~l~~p~nptG~~ 159 (393)
.+++.+|| .|++++|+|. .|...++..|++++.++.+ |++++++++. .++++|++++||||||.+
T Consensus 109 ~~~~~~g~~~Vlv~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~ 184 (374)
T PRK02610 109 IATCLGGEGSILVAEPTFS----MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNP 184 (374)
T ss_pred HHHcCCCCCeEEEcCCChH----HHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCC
Confidence 66777786 8999999998 4788889999999998864 6788888775 479999999999999999
Q ss_pred cCHHHHHHHHHh-CCCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 160 FDVKAISAVVKQ-HPDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 160 ~~~~~l~~l~~~-~~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
++.+++.++++. + +++||+||+|.++...... ...+.++++||||.+ |+||+|+||++++ +++++.+.....
T Consensus 185 ~s~~~l~~l~~~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~-~~l~~~l~~~~~ 261 (374)
T PRK02610 185 LTAAELEWLRSLPE-DILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGH-PELIAVLEKVRL 261 (374)
T ss_pred CCHHHHHHHHhccC-CcEEEEeccccccCccchHHHHhcCCCEEEEEecchhc-cCcccceeeeecC-HHHHHHHHHhcC
Confidence 998888777653 4 8999999999876432211 123568999999999 7999999999987 888888876653
Q ss_pred hcCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
.+ ..+...+.++...++.. ...+++..+++..+.+.|+.++++. + .|. .+.++|+.+
T Consensus 262 ~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~p~----------------~g~f~~~~l 321 (374)
T PRK02610 262 PY--NLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLR-V-WPS----------------AANFLYLRL 321 (374)
T ss_pred CC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-e-CCC----------------cceEEEEeC
Confidence 33 23445555555555443 2233444455566777777665542 2 232 256789988
Q ss_pred cCCHHHHHHHHHhcCcccc
Q psy12791 312 NGGAEETRIFLESLLIFRC 330 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~ 330 (393)
+. ......+.+.+...++
T Consensus 322 ~~-~~~~~~~~~~l~~~gi 339 (374)
T PRK02610 322 SQ-DAALAALHQALKAQGT 339 (374)
T ss_pred CC-CCCHHHHHHHHHHCCE
Confidence 52 2233445555443333
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=266.03 Aligned_cols=325 Identities=17% Similarity=0.228 Sum_probs=224.2
Q ss_pred CCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHH
Q psy12791 7 DTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGL 84 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~ 84 (393)
++.+...+...|....+.+| +.++||+++++.+.+.+.+... ...+|+++...+||+++|++++.+ ++|++|+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~a~~~~~~---~~~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga 80 (354)
T PRK06358 4 GGNINEIAREKGLTKNMILDFSANINPLGVPESLKQAITENLD---KLVEYPDPDYLELRKRIASFEQLDLENVILGNGA 80 (354)
T ss_pred CccHHHHHHHhCCCccceEEecCCCCCCCCCHHHHHHHHHHHH---hhhcCCCccHHHHHHHHHHHhCCChhhEEECCCH
Confidence 33333333334544445678 8899999888777776654422 244566777889999999999987 799999999
Q ss_pred HH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 85 GA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 85 ~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
++ +..+...+.+ +.|++++|+|+ .|...++..|++++.++.+ | +++.+.+.++++++++++|||||
T Consensus 81 ~~~l~~~~~~~~~-~~v~i~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPt 154 (354)
T PRK06358 81 TELIFNIVKVTKP-KKVLILAPTFA----EYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPT 154 (354)
T ss_pred HHHHHHHHHHhCC-CcEEEecCChH----HHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCC
Confidence 87 5444333444 68999999998 4777788899999998764 3 34555566679999999999999
Q ss_pred ccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC---C----C-CCcCcEEEEcccccccCCCCceEEEEEecChHH
Q psy12791 157 MTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---S----L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL 225 (393)
Q Consensus 157 G~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---~----~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~ 225 (393)
|.+++ +++|.++|+++ ++++|+||+|..+.+.. + . ..++.++++||||.+ |+||+|+||++++++.+
T Consensus 155 G~~~~~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~ 232 (354)
T PRK06358 155 GQLISKEEMKKILDKCEKR-NIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNL 232 (354)
T ss_pred CCccCHHHHHHHHHHHHhc-CCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhc-cCcchhheeeecCCHHH
Confidence 99998 77778888899 99999999998766432 1 1 124569999999999 79999999999865778
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 226 QARLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
.+.+...... ...+...+.++...++. +...++...++++.+.+.|+.++++. +..|.
T Consensus 233 ~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~---------------- 293 (354)
T PRK06358 233 AEKLLQMREP--WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIK-VYKPS---------------- 293 (354)
T ss_pred HHHHHHhCCC--CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EcCCc----------------
Confidence 8877665442 33345555555555543 24445566677778888887665532 22222
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
++++|+.++. . ..+.+.+...++.+..|..+. +..+++|||+++.... -+.
T Consensus 294 -g~f~~~~~~~-~---~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~~iRls~~~~~~---~~~ 344 (354)
T PRK06358 294 -VNFIFFKLEK-P---IDLRKELLKKGILIRSCSNYR---------------------GLDENYYRVAVKSRED---NKK 344 (354)
T ss_pred -ceEEEEEcCc-h---HHHHHHHHHCCeEEEECCCCC---------------------CCCCCEEEEEeCCHHH---HHH
Confidence 5688998852 2 345555444566666654431 1125899999976432 234
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
|.++|+++
T Consensus 345 l~~~l~~~ 352 (354)
T PRK06358 345 LLKALEVI 352 (354)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=268.14 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=207.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC--CccccCCCCchHHHHHHHHHHHh----C--CC-c-EEEeccHHHH-H-HH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ--GFEYSRSNNPTRRNLERCIASLE----E--AK-H-GLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~lr~~la~~~----~--~~-~-~i~~~~G~~a-l-~~ 89 (393)
+.++ +.+++|+.+++.+.+.+.+.+.. ...|. +..+..+||+++|+++ | ++ + +|++|+|+++ + .+
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~ 108 (388)
T PRK07366 31 ELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYL--LFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHL 108 (388)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCC--CCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHH
Confidence 4567 78889988777666655433211 22232 3467889999999987 4 33 5 6999999886 6 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
+..++++||.|++++|+|+. +...++..|++++.++.+ |++++.+.+.++++++++++||||||.+++
T Consensus 109 ~~~l~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~ 184 (388)
T PRK07366 109 PLAVLNPGDFALLLDPGYPS----HAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPL 184 (388)
T ss_pred HHHhCCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCH
Confidence 67788999999999999984 777788899999998874 466777777677999999999999999998
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccCC-----C-CC----cCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQKS-----L-PW----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~~-----~-~~----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+++|.++|+++ +++||+||+|.++.+... + .. .+.++++||||.+ |+||+|+||++++ +++++.+
T Consensus 185 ~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~-~~li~~l 261 (388)
T PRK07366 185 SFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGN-AQLIQAL 261 (388)
T ss_pred HHHHHHHHHHHHc-CeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCC-HHHHHHH
Confidence 55677788999 999999999998764321 1 11 2358899999999 7999999999987 8899988
Q ss_pred HHHHHhcCCCC-CHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc
Q psy12791 230 KFLQNSMGVVP-SPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG 305 (393)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 305 (393)
......+..+. +...+.....-. +.+...++.+.+++..+.+.|+.+ ++. +..|. .+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~----------------~g~ 323 (388)
T PRK07366 262 RQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-GWP-VPLPE----------------ATM 323 (388)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC----------------eeE
Confidence 77666544333 222222211111 223444556667777788888765 221 22232 256
Q ss_pred eEEEEEcCCH-HHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 306 MLSFYVNGGA-EETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 306 ~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
++|+.+++.. .....+.+.+ +..++.+.+|..+.. ..++++||+++.
T Consensus 324 f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~ 372 (388)
T PRK07366 324 YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGK---------------------SGEGYVRFALVH 372 (388)
T ss_pred EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCc---------------------CCCCeEEEEecC
Confidence 7899885310 1123344333 344566666544310 114799999984
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=268.26 Aligned_cols=319 Identities=15% Similarity=0.228 Sum_probs=220.1
Q ss_pred ccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEe-ccHHHH-H-HHH
Q psy12791 16 HIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCY-SSGLGA-V-TAV 90 (393)
Q Consensus 16 ~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~-~~G~~a-l-~~~ 90 (393)
..|..+.++++ +.|.||+++++.+.+++.+... .+.+|+++...++|+++|++++.+ +.+++ ++|+++ + .++
T Consensus 28 ~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~ 104 (361)
T PRK00950 28 EYGIDPESIIKLGSNENPLGPSPKAVEAIEKELS---KIHRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLM 104 (361)
T ss_pred HhCCCccceEEccCCCCCCCCCHHHHHHHHHHHH---hhcCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHH
Confidence 33555557888 8899999988887666544322 234566677799999999999986 67777 899887 5 555
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHH
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 165 (393)
..++++||+|++++|+|+ .+...++..|++++.++.+ |++++++.+.++++++++++|+||||.++|.+++
T Consensus 105 ~~~~~~gd~vlv~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l 180 (361)
T PRK00950 105 RTFIDPGDEVIIPTPTFS----YYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDI 180 (361)
T ss_pred HHhcCCCCEEEEcCCChH----HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHH
Confidence 667789999999999997 4666678889999988753 6888998888789999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccC--CC--CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQK--SL--PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~--~~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
.++|+++ ++++|+||+|..+.... ++ ..++.++++||||.+ |++|+|+||++++ +++++.++.....++ .+
T Consensus 181 ~~l~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~~--~~ 255 (361)
T PRK00950 181 RKILEST-DALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVP-EWLIDYYMRAKTPFS--LT 255 (361)
T ss_pred HHHHHHC-CcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCC-HHHHHHHHHhcCCCC--CC
Confidence 9999999 99999999998754211 11 124568999999999 6999999999997 888887776554433 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
...+..+...++... .+++..+..+...+.+.+.-.+. + .+. .+.++|+.+.+ .....+
T Consensus 256 ~~~~~~a~~~l~~~~-~~~~~~~~~~~~r~~l~~~l~~~-~-~~~----------------~~~~i~~~~~~--~~~~~~ 314 (361)
T PRK00950 256 RLSQAAAIAALSDKE-YIEKSIEHGIKSREYLYNELPFK-V-YPS----------------EANFVLVDVTP--MTAKEF 314 (361)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHhhcCee-E-CCC----------------cceEEEEECCC--CCHHHH
Confidence 445444444444321 23333333333333332211111 1 121 24678888832 223444
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+.+...++.+.+|..+. +..+++||+|++ +.++++.+.++|+++.
T Consensus 315 ~~~l~~~gv~v~~~~~f~---------------------~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 315 CEELLKRGVIVRDCTSFR---------------------GLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred HHHHHHCCEEEeeCCccC---------------------CCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 444443455555443210 112579999998 4556788888887653
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=263.32 Aligned_cols=313 Identities=17% Similarity=0.200 Sum_probs=220.4
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSA 96 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~ 96 (393)
+++++| +.|+||+++++.+.+++.+... ...+|+++...+||+++|++++.+ ++|++|+|+++ + .++.+++++
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~~---~~~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~ 111 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIAE---LLRLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRP 111 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHHH---HhhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCC
Confidence 446778 8999999988877766543211 234566655568999999999976 78999999887 6 556677899
Q ss_pred CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHh
Q psy12791 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171 (393)
Q Consensus 97 gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 171 (393)
||.|+++.|+|+. +...++..|++++.++.+ |++++++.+.+++++|+++|||||||.+++.+++.++++.
T Consensus 112 gd~vli~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~ 187 (371)
T PRK05166 112 GDRVVTLYPSFPL----HEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDA 187 (371)
T ss_pred CCEEEEcCCChHH----HHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999983 666778899999999874 6889999888889999999999999999998888888775
Q ss_pred C-CCcEEEEeCccCcccccCC-------CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 172 H-PDILLVLDNTFLTAYYQKS-------LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 172 ~-~~~~livDea~~~~~~~~~-------~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
. +++++|+||+|.++..... .. ..+.++++||||.+ |++|+|+||++++++++.+.++.....+ ..+
T Consensus 188 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~~~~~~~--~~~ 264 (371)
T PRK05166 188 TPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLDRVRTPF--NVN 264 (371)
T ss_pred CCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHHHhccCC--CCC
Confidence 3 3789999999997663211 11 12469999999999 6999999998876588888886655433 234
Q ss_pred HHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 242 PFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
...+..+...+.. ++..++...++++.+.+.|+.+ ++. + .|. .+.++|+.++.+ .
T Consensus 265 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~p~----------------~g~fl~~~~~~~---~ 322 (371)
T PRK05166 265 GAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYR-I-APS----------------RANFLFFDARRP---A 322 (371)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCe-e-CCC----------------cCCEEEEeCCCC---H
Confidence 4444444443332 3334555666777788888765 222 2 222 256788887422 2
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+.+.+...++.+..|.. + + .+++|||+++.. +..+.+.++|+.+.
T Consensus 323 ~~l~~~l~~~gi~v~p~~~------~----------------~-~~~~iRi~~~~~---~~~~~l~~~l~~i~ 369 (371)
T PRK05166 323 SAVAEALLRQGVIVKPWKQ------P----------------G-FETFIRVSIGSP---EENDHFVAALDKVL 369 (371)
T ss_pred HHHHHHHHHCCeEEecCCC------C----------------C-CCCeEEEEcCCH---HHHHHHHHHHHHHh
Confidence 3344444333555554421 0 0 158999999953 33456666666554
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=261.73 Aligned_cols=309 Identities=18% Similarity=0.226 Sum_probs=219.2
Q ss_pred CC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCCeE
Q psy12791 25 RS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGDHI 100 (393)
Q Consensus 25 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd~v 100 (393)
++ +.++||+.+++.+.+++.+.+.. ..+.+|+++...+||+++|++++.+ ++|++++|+++ + .++..++++||+|
T Consensus 25 ~~l~~~~~~~~~p~~~~~a~~~~~~~-~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~V 103 (351)
T PRK14807 25 YKMDANETPFELPEEVIKNIQEIVKS-SQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVV 103 (351)
T ss_pred eEccCCCCCCCCCHHHHHHHHHHhhc-CcccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEE
Confidence 45 78899998888887776443221 2345566677889999999999986 78999999887 6 6666778999999
Q ss_pred EEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCC
Q psy12791 101 ISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPD 174 (393)
Q Consensus 101 l~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 174 (393)
++++|+|.. +...++..|++++.++.+ |++++++.+.+ ++++|++++|+||||.+++.+++.++++++ +
T Consensus 104 lv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~-~ 178 (351)
T PRK14807 104 IYPHPSFAM----YSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKS-R 178 (351)
T ss_pred EEeCCChHH----HHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-C
Confidence 999999983 666778899999998874 67889888865 799999999999999999999999999998 8
Q ss_pred cEEEEeCccCcccccCC---C-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 175 ILLVLDNTFLTAYYQKS---L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 175 ~~livDea~~~~~~~~~---~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
.++|+||+|..+..... . ...+.++++||||.+ |+||+|+||++++ +++++.++..... ...+...+..+..
T Consensus 179 ~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~v~~-~~~~~~~~~~~~~--~~~~~~~q~~~~~ 254 (351)
T PRK14807 179 GIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF-GLAGLRVGYAVAN-ENILKYLNLVKSP--YNINSLSQVIALK 254 (351)
T ss_pred CEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc-ccchhceeeeecC-HHHHHHHHHccCC--CCcCHHHHHHHHH
Confidence 88999999987542211 1 135679999999999 6999999999997 8888888754432 2234455554444
Q ss_pred ccCC--HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 251 GLKT--LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 251 ~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
.++. +.+.++...+++..+.+.|+..+++. + .|. .++++|+.++ +.+ .+.+.+...
T Consensus 255 ~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~-~-~~~----------------~~~~~~i~~~-~~~---~~~~~l~~~ 312 (351)
T PRK14807 255 VLRTGVLKERVNYILNERERLIKELSKIPGIK-V-YPS----------------KTNFILVKFK-DAD---YVYQGLLER 312 (351)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CcC----------------CccEEEEEcC-CHH---HHHHHHHHC
Confidence 4432 33444555666677777777655543 2 222 2567888884 433 333333333
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++.+..++.. . ..++++|||++.. +..++|.++|+++
T Consensus 313 gV~v~~~~~~-----~-----------------~~~~~iRis~~~~---~~~~~l~~~l~~~ 349 (351)
T PRK14807 313 GILVRDFSKV-----E-----------------GLEGALRITVSSC---EANDYLINGLKEL 349 (351)
T ss_pred CEEEEECCCC-----C-----------------CCCCeEEEEcCCH---HHHHHHHHHHHHh
Confidence 4444321110 0 0157999999853 3345667776654
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=263.35 Aligned_cols=321 Identities=17% Similarity=0.156 Sum_probs=217.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCC--CCccccCCCCchHHHHHHH----HHHHhCC----CcEEEeccHHHH-H-HH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPP--QGFEYSRSNNPTRRNLERC----IASLEEA----KHGLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~lr~~----la~~~~~----~~~i~~~~G~~a-l-~~ 89 (393)
+.++ +.+.+|+.+++.+.+++.+.+. ....|.. ..+..++|++ +++++|. +++|++++|++. + .+
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~--~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQA--VQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 4456 7777887777666555433211 1122332 2334445444 4555575 357899999875 6 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+..++++||+|++++|+|.. +...++..|++++.++.+ |++++++.+++++++|++++||||||.+++
T Consensus 106 ~~~~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~ 181 (389)
T PRK05957 106 ILAITDPGDEIILNTPYYFN----HEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEAL 181 (389)
T ss_pred HHHhcCCCCEEEEeCCCCcC----HHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHH
Confidence 66778999999999999985 445567889999998775 689999999888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ |+++|+||+|.++.+.. +. .....++++||||.+ |++|+|+||++++ +++++++...
T Consensus 182 ~~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~ 258 (389)
T PRK05957 182 LRAVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIP-IHLLEAIKKI 258 (389)
T ss_pred HHHHHHHHHHc-CcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhc-cCccceeEEEecC-HHHHHHHHHH
Confidence 88899999999 99999999999765432 11 123569999999999 7999999999997 8899988877
Q ss_pred HHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
........+...+..+...++. +.+..+++.++++.+.+.|+.++.+..+..|. .+.++|
T Consensus 259 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~----------------gg~~~~ 322 (389)
T PRK05957 259 QDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPAN----------------GAFYCF 322 (389)
T ss_pred HhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC----------------eeEEEE
Confidence 7655555555555554444432 34455566677777888887655432222121 134578
Q ss_pred EEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH---HHHHHH
Q psy12791 309 FYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD---LIADLD 384 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~---~i~~l~ 384 (393)
+.++. ......+.+.+ +..++.+.+|..+.. ..++++|||++..+.++ .++++.
T Consensus 323 ~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~~~~l~~~~~~l~ 380 (389)
T PRK05957 323 LKVNT-DLNDFELVKQLIREYRVAVIPGTTFGM---------------------KNGCYLRIAYGALQKATAKEGIERLV 380 (389)
T ss_pred EeCCC-CCChHHHHHHHHHHCCEEEccchhhCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHH
Confidence 88752 22234454554 234666666654321 01469999998766543 344455
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
+.++++
T Consensus 381 ~~~~~~ 386 (389)
T PRK05957 381 QGLKTI 386 (389)
T ss_pred HHHHhh
Confidence 555444
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=264.99 Aligned_cols=314 Identities=16% Similarity=0.216 Sum_probs=225.6
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSA 96 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~ 96 (393)
..+++| ++|.||+++++.+.+++.+... .+.+|+++...+||+++|++++.+ ++|++|+|+++ + .++..++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~---~~~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~ 107 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAAD---ELHRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGP 107 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHH---hhcCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCC
Confidence 346778 8899999988776665544322 245666666789999999999986 78999999887 6 555677889
Q ss_pred CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 97 gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
||.|++++|+|. .+...++..|++++.++.+ |++++++.+++++++|++++||||||.+++.+++.++++.+
T Consensus 108 gd~vl~~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 183 (367)
T PRK02731 108 GDEVIYSEHGFA----VYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGV 183 (367)
T ss_pred CCEEEEecCCHH----HHHHHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhC
Confidence 999999999996 3566677889999999874 78999999888899999999999999999999999998874
Q ss_pred -CCcEEEEeCccCcccccC----CCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHH
Q psy12791 173 -PDILLVLDNTFLTAYYQK----SLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243 (393)
Q Consensus 173 -~~~~livDea~~~~~~~~----~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
.++++|+||+|..+.... ++. ....++++|+||.+ |++|+|+||++++ +++.+.++.....+. .+..
T Consensus 184 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~-~~~~~~l~~~~~~~~--~~~~ 259 (367)
T PRK02731 184 PPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAP-PEIIDALNRVRQPFN--VNSL 259 (367)
T ss_pred CCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCC-HHHHHHHHHccCCCC--CCHH
Confidence 289999999998755321 111 23569999999999 7999999999997 888888876544332 3445
Q ss_pred HHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 244 DCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 244 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
.+..+...++. +....+...++...+.+.|+.. ++. + .+. .+.++|+.++ +......
T Consensus 260 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~g~~~~i~~~-~~~~~~~ 319 (367)
T PRK02731 260 ALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLE-Y-IPS----------------VGNFILVDFD-DGKDAAE 319 (367)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCC----------------CceEEEEECC-CCCCHHH
Confidence 55555555543 2223334445556677777654 222 1 121 2578899883 2233445
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+.+...++.+..+..+ + .+++||+|++ +.++++.+.++|+++.
T Consensus 320 ~~~~L~~~gI~v~~~~~~----------------------~-~~~~iRis~~---~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 320 AYQALLKRGVIVRPVAGY----------------------G-LPNALRITIG---TEEENRRFLAALKEFL 364 (367)
T ss_pred HHHHHHHCCEEEEeCCCC----------------------C-CCCeEEEecC---CHHHHHHHHHHHHHHH
Confidence 555555445555544321 1 1478999997 4566788888887664
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=262.82 Aligned_cols=326 Identities=17% Similarity=0.170 Sum_probs=223.7
Q ss_pred CCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH
Q psy12791 6 QDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG 83 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G 83 (393)
|+......+..-|+.+.+++| +.|+||+++++.+.+++.+.... +..|+++...+||+++|++++++ ++|++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~a~~~~~~~---~~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G 82 (360)
T PRK07392 6 HGGNLAWAAAIAGCPPDAILDFSASINPLGPPESVIAAIQSALSA---LRHYPDPDYRELRLALAQHHQLPPEWILPGNG 82 (360)
T ss_pred CCccHHHHHHHcCCCcccEEEeCCcCCCCCCCHHHHHHHHHHHHH---hhcCCCcCHHHHHHHHHHHhCcChhhEEECCC
Confidence 344444334445677777888 89999999998887776544222 44556667789999999999876 78999999
Q ss_pred HHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----------CHHHHHhhcCCCCcEEEEecC
Q psy12791 84 LGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----------KIENLIKYIKPNTKMVWIENP 152 (393)
Q Consensus 84 ~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----------d~~~l~~~l~~~~~~v~l~~p 152 (393)
+++ +..+...+.+||.|++++|+|. .+...++..|++++.++.+ +++++++.. .++++++++||
T Consensus 83 ~~~~i~~~~~~l~~g~~vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP 157 (360)
T PRK07392 83 AAELLTWAGRELAQLRAVYLITPAFG----DYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNP 157 (360)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCcH----HHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCC
Confidence 987 6434333457899999999998 4788888999999998874 244444433 46899999999
Q ss_pred CCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---C-C---C-CcCcEEEEcccccccCCCCceEEEEEecChH
Q psy12791 153 TNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---S-L---P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDS 224 (393)
Q Consensus 153 ~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---~-~---~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~ 224 (393)
|||||.+++.++|.++++++ ++ +|+||+|.++.+.. + . . ..+.++++||||.+ |+||+|+||++++ ++
T Consensus 158 ~NPTG~~~~~~~l~~l~~~~-~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~-~~ 233 (360)
T PRK07392 158 HNPTGKLWSREAILPLLEQF-AL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAH-PD 233 (360)
T ss_pred CCCCCCCcCHHHHHHHHHHC-CE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCC-HH
Confidence 99999999999999999999 85 66799999875422 1 1 1 23569999999999 6999999999997 77
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 225 LQARLKFLQNSMGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
+++.+..... ....+...+.++...++.. ....+...+++..+.+.|+.++++. + .++
T Consensus 234 ~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~--------------- 294 (360)
T PRK07392 234 RLQRWQQWRD--PWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLT-P-LPS--------------- 294 (360)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC---------------
Confidence 8777765442 2345666666665555542 1223445566777888887665543 1 222
Q ss_pred CCcceEEEEEcCCHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHH
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLI 380 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i 380 (393)
.+.++++.++. ....+... ++..++.+..|..+.. ..++++||+++.....
T Consensus 295 -~~~fl~~~~~~---~~~~l~~~ll~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~--- 346 (360)
T PRK07392 295 -AANFLLVQSQG---SALQLQEKLLQQHRILIRDCLSFPE---------------------LGDRYFRVAVRTEAEN--- 346 (360)
T ss_pred -CCCEEEEEcCC---CHHHHHHHHHhhCCEEEEeCCCCCC---------------------CCCCEEEEEeCCHHHH---
Confidence 25678887742 22334433 3444566656544310 1257999999875432
Q ss_pred HHHHHHHHHh
Q psy12791 381 ADLDQALRKA 390 (393)
Q Consensus 381 ~~l~~al~~~ 390 (393)
+.|.++|+++
T Consensus 347 ~~l~~al~~~ 356 (360)
T PRK07392 347 QRLLEALAAI 356 (360)
T ss_pred HHHHHHHHHH
Confidence 3445555443
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=262.16 Aligned_cols=311 Identities=13% Similarity=0.170 Sum_probs=219.0
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.++++ +.+.||+.+++.+.+++.+.... ...+|++++..+||+++|++++.+ ++|++|+|+++ + .++.+++++|
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~--~~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~g 101 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGD--DLRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHD 101 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhh--hhhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCC
Confidence 46678 89999998887777666543221 234566777899999999999986 78999999887 6 6667788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|+|++++|+|+ .+...++..|++++.++.+ |++++++ .+++|++++||||||.+++.+++.++++.+
T Consensus 102 d~vlv~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~ 173 (353)
T PRK05387 102 RPLLFPDITYS----FYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAAN 173 (353)
T ss_pred CEEEEeCCCHH----HHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 99999999996 4666678889999998875 5666642 468899999999999999999999999875
Q ss_pred CCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc-CCCCCHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSPFDCWL 247 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 247 (393)
+++++|+||+|..+...... ...++++++||||.+ |++|+|+||++++ +++++.++...... ....+...+..
T Consensus 174 ~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~ 251 (353)
T PRK05387 174 PDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSR-SLAGLRVGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAG 251 (353)
T ss_pred CCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhh-cchhhhceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHH
Confidence 48999999999764322111 135679999999999 6999999999987 88888887665433 22344555554
Q ss_pred HHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHh
Q psy12791 248 VTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLES 324 (393)
Q Consensus 248 ~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
+...++. +.+.+++..++++.+.+.|+.+ ++. + .|. .+.++++.+++ ...+.+.+.
T Consensus 252 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~~~~~~~~~~~--~~~~~~~~~ 310 (353)
T PRK05387 252 AIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFE-V-LPS----------------KANFVFARHPS--HDAAELAAK 310 (353)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCC----------------cCcEEEEECCC--CCHHHHHHH
Confidence 4444433 3345556667777788888765 332 2 222 24678888742 123344444
Q ss_pred cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+...++.+...+ .+ ..++++|+|++ +++.++.+.++|+++.
T Consensus 311 l~~~gi~v~~~~------~~-----------------~~~~~iRis~~---~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 311 LRERGIIVRHFN------KP-----------------RIDQFLRITIG---TDEEMEALVDALKEIL 351 (353)
T ss_pred HHHCCEEEEECC------CC-----------------CCCCeEEEEeC---CHHHHHHHHHHHHHHh
Confidence 443344432110 00 01579999998 3466777777777653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=262.04 Aligned_cols=308 Identities=19% Similarity=0.193 Sum_probs=213.6
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.+.++ +.|+||+++++.+.+++.+... ...+|+++...+||+++|+++|.+ ++|++|+|+++ + .++..++++|
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~---~~~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~g 119 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAA---LSGRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPT 119 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHH---HhcCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCC
Confidence 35556 8899999999888776654321 234566677889999999999976 78999999886 6 6667788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|+|++++|+|+ .+...++..|++++.++.+ |++++++. .+++++++++|||||||.+++.+++.++++.+
T Consensus 120 d~Vli~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~ 194 (370)
T PRK09105 120 AGLVTADPTYE----AGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANK 194 (370)
T ss_pred CEEEEeCCChH----HHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhC
Confidence 99999999998 4677788999999999874 67788766 45789999999999999999999988887653
Q ss_pred -CCcEEEEeCccCcccccCC-CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 173 -PDILLVLDNTFLTAYYQKS-LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 173 -~~~~livDea~~~~~~~~~-~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
.++++|+||+|..+..... .. ..+.++++||||.+ |++|+|+||++++ +++++.+... . ....+...+.
T Consensus 195 ~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~-~~~i~~l~~~-~--~~~~~~~~~~ 269 (370)
T PRK09105 195 PAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAAR-PDLLAKLARF-G--HNPLPVPAAA 269 (370)
T ss_pred CCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhh-cCCccceeeeecC-HHHHHHHHhc-C--CCCcCHHHHH
Confidence 2899999999976432211 11 23569999999999 7999999999997 8888877655 2 2223343433
Q ss_pred HHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 247 LVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
.+...+.. +...++...++++.+.+.|+.+ ++. +..+ .++++.+.++.+. ..+.+
T Consensus 270 aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-----------------~~~f~~~~~~~~~---~~l~~ 327 (370)
T PRK09105 270 AGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYK-CTPS-----------------QANCFMVDVKRPA---KAVAD 327 (370)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-cCCC-----------------CCcEEEEeCCCCH---HHHHH
Confidence 34433332 2333455566677777888764 222 1111 2456666663222 33444
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...++.+ |..+ + ..++++|+|++. ++..+.+.++|+++.
T Consensus 328 ~L~~~gI~v--~~~~-----~-----------------~~~~~~Ris~~~---~~~~~~l~~al~~~~ 368 (370)
T PRK09105 328 AMAKQGVFI--GRSW-----P-----------------IWPNWVRVTVGS---EEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHCCcEE--ecCC-----C-----------------CCCCeEEEEcCC---HHHHHHHHHHHHHHh
Confidence 433324333 2111 0 015799999983 455778888887654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.34 Aligned_cols=317 Identities=16% Similarity=0.114 Sum_probs=216.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhC----C--C-c-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEE----A--K-H-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~----~--~-~-~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.+++.+.+.+.+.+.. ..+.+|++ .+..+||+++|++++ . + + .|++|+|+++ + .++
T Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~ 108 (383)
T TIGR03540 30 DVISLGIGDPDLPTPKHIVEALCKAAEN-PENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIP 108 (383)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHH
Confidence 4566 77888877766555544332111 12334544 357889999999863 3 2 3 6888888775 7 666
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
..++++||.|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 109 ~~~~~~gd~vlv~~P~y~~----~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~ 184 (383)
T TIGR03540 109 LAFVNPGDIVLVPDPGYPV----YRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLK 184 (383)
T ss_pred HHhCCCCCEEEEeCCCCcc----hHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHH
Confidence 7788999999999999985 666778899999988873 578888888888999999999999999999
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC--CC-----C--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK--SL-----P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~--~~-----~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|.++|+++ ++++|+||+|.++.+.. +. + ....++++||||.+ |++|+|+||++++ +++++.+..
T Consensus 185 ~~~~i~~~a~~~-~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~-~~l~~~~~~ 261 (383)
T TIGR03540 185 FFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGN-ADLIAGLGK 261 (383)
T ss_pred HHHHHHHHHHHc-CEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCC-HHHHHHHHH
Confidence 68888899999 99999999998754421 11 1 13458899999999 7999999999987 888888876
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.........+...+..+...++. ++..++.+.+++..+.+.|+++ ++. +..|. .+.++
T Consensus 262 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~~----------------~~~~~ 323 (383)
T TIGR03540 262 VKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GID-VEKPK----------------ATFYV 323 (383)
T ss_pred HHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE-ecCCC----------------cceEE
Confidence 65544444444444444443432 3334555667777888888865 332 22222 13458
Q ss_pred EEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
|+.+++ ......+.+.+ +..++.+..|..+.. ..++++|+|++.. . +.+.++
T Consensus 324 ~~~l~~-~~~~~~~~~~ll~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~~-~----~~l~~~ 376 (383)
T TIGR03540 324 WVPVPE-GYTSAEFAARLLEETGVVVTPGVGFGE---------------------YGEGYIRISLTVP-D----ERLEEA 376 (383)
T ss_pred EEECCC-CCCHHHHHHHHHHHCCEEEecchhhCc---------------------cCCCeEEEEecCC-H----HHHHHH
Confidence 888852 22234444443 334566655544311 0147999999843 2 366666
Q ss_pred HHHhhc
Q psy12791 387 LRKACK 392 (393)
Q Consensus 387 l~~~~~ 392 (393)
++.+.+
T Consensus 377 l~~l~~ 382 (383)
T TIGR03540 377 VARIKK 382 (383)
T ss_pred HHHHhh
Confidence 665543
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=260.41 Aligned_cols=310 Identities=16% Similarity=0.194 Sum_probs=219.3
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCCe
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGDH 99 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd~ 99 (393)
.++ +.|+||+++++.+.+++.+... ....|+++...+||+++|++++.+ ++|++++|+++ + .++..++++||.
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~---~~~~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~ 110 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAA---EIWKYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDP 110 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHH---HhhcCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCE
Confidence 346 7899999999888777654422 223455666889999999999986 79999999987 6 555667899999
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhc-CCCCcEEEEecCCCCcccccCHHHHHHHHHhC-C
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-P 173 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~ 173 (393)
|++++|+|+. +...++..|.+++.+|.+ |++++.+.+ .++++++++++||||||.+++.+++.++++.+ .
T Consensus 111 vlv~~p~y~~----~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~ 186 (369)
T PRK08153 111 VVTSLGAYPT----FNYHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPE 186 (369)
T ss_pred EEECCCcchH----HHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 9999999984 555667789999988874 677776665 35789999999999999999988888887754 3
Q ss_pred CcEEEEeCccCcccccC---CCC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 174 DILLVLDNTFLTAYYQK---SLP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 174 ~~~livDea~~~~~~~~---~~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
+++||+||+|..+.... ++. ..+.++++||||.+ |++|+|+||++++ +++++.+......+ ..++..+.++
T Consensus 187 ~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~v~~-~~~~~~l~~~~~~~--~~s~~~q~~~ 262 (369)
T PRK08153 187 TTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAY-GLAGARVGYAIGA-PGTIKAFDKVRNHF--GMNRIAQAAA 262 (369)
T ss_pred CcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhc-cCcchheeeeecC-HHHHHHHHHhhcCC--CCCHHHHHHH
Confidence 78999999999765421 111 23569999999999 7999999999997 88888887666543 3456666655
Q ss_pred HhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 249 TRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 249 ~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
...++. +...++...++++.+.+.|+..+ +. ..|. .+.++++.+..+.+....+++.+
T Consensus 263 ~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g-~~--~~p~----------------~~~f~~~~~~~~~~~a~~l~~~l 323 (369)
T PRK08153 263 LAALKDQAYLAEVVGKIAAARDRIAAIARANG-LT--PLPS----------------ATNFVAIDCGRDGAFARAVLDGL 323 (369)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-Cc--cCCC----------------cCcEEEEECCCCcccHHHHHHHH
Confidence 555543 22234444556666677776542 21 1122 24677777732334566777766
Q ss_pred Cccccccc-cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 326 LIFRCAES-LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 326 ~~~~~~~~-~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...++.+. +|.. ..++++|+|++ ++++.+.+.++|+++
T Consensus 324 ~~~Gi~v~~p~~~------------------------~~~~~iRis~~---~~~~~~~~~~al~~~ 362 (369)
T PRK08153 324 IARDIFVRMPGVA------------------------PLDRCIRVSCG---PDEELDLFAEALPEA 362 (369)
T ss_pred HHCCeEEeeCCCC------------------------CCCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 55555542 2110 01479999998 456667777777654
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=261.81 Aligned_cols=245 Identities=11% Similarity=0.100 Sum_probs=186.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~~~ 91 (393)
..++ +.|+||+.+++.+.+++.+.+.. ...+.+|++++..+||+++|+++ | .+ ++|++|+|+++ + .++.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~ 106 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQ 106 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHH
Confidence 4467 89999999998888776544221 12345667778899999999998 3 33 78999999887 6 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHH
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l 165 (393)
+++++||.|+++.|+|+ .|...++..|.+++.++.+ |++++++++. .++++|++++||||||.+++.+++
T Consensus 107 ~~~~~gd~v~v~~P~y~----~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l 182 (368)
T PRK03317 107 AFGGPGRTALGFVPSYS----MHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDV 182 (368)
T ss_pred HhcCCCCEEEEeCCChH----HHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHH
Confidence 78899999999999998 4777788899999888753 6888988886 468999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccC-C--CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQK-S--LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~-~--~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
.++++.+ ++++|+||+|..+.... + .. .+..++++||||.+ |.+|+|+||++++ +++++.++..... .
T Consensus 183 ~~l~~~~-~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~-~~~~~~l~~~~~~--~ 257 (368)
T PRK03317 183 EAILDAA-PGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAF-AFAGGRLGYLAAA-PAVVDALRLVRLP--Y 257 (368)
T ss_pred HHHHHHC-CceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhh-ccchhhhhhhhCC-HHHHHHHHhcCCC--C
Confidence 9999999 99999999999764321 1 11 23468999999999 6999999999997 8888888755432 3
Q ss_pred CCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhC
Q psy12791 239 VPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 276 (393)
..++..+..+...++.. ...+++..++...+.+.|+.+
T Consensus 258 ~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 298 (368)
T PRK03317 258 HLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL 298 (368)
T ss_pred CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34556665555555443 223444455666677777654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=259.71 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=209.4
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CCC----c-EEEeccHHHH-H-HH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EAK----H-GLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~~----~-~i~~~~G~~a-l-~~ 89 (393)
+.++ +.+.+|+.+++.+.+.+.+.+.. ...|++ .+..+||+++|+++ |.+ + +|++|+|+++ + .+
T Consensus 30 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~ 106 (396)
T PRK09147 30 PPISLSIGEPKHPTPAFIKDALAANLDG---LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF 106 (396)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHhhh---hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH
Confidence 4566 77888887776666665443222 334444 45788999999875 532 4 8999999876 7 66
Q ss_pred HHHhcCC---CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 90 VTHLLSA---GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 90 ~~~~~~~---gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+..++++ ||.|++++|+|+. +...++..|++++.+|.+ |++++++.+.++++++++++||||||.+
T Consensus 107 ~~~l~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~ 182 (396)
T PRK09147 107 AQTVIDRDGPGPLVVCPNPFYQI----YEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAV 182 (396)
T ss_pred HHHHcCCCCCCCEEEEcCCCccc----hHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCcc
Confidence 7778899 8999999999984 777788899999999874 5788877776789999999999999999
Q ss_pred cC---HHHHHHHHHhCCCcEEEEeCccCcccccC---C---C---------CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 160 FD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---S---L---------PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 160 ~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---~---~---------~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
++ +++|.++|+++ +++||+||+|..+.+.. + . ..++.++++||||.+ |++|+|+||++++
T Consensus 183 ~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~~ 260 (396)
T PRK09147 183 LPLDDWKKLFALSDRY-GFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGFVAGD 260 (396)
T ss_pred CCHHHHHHHHHHHHHc-CeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeeeecCC
Confidence 98 66778888899 99999999999865432 1 0 123569999999999 6999999999997
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhh
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~ 298 (393)
+++++.+.......+...+...+..+...+. .+...++.+.++++.+.+.|+.+ +. +..|.
T Consensus 261 -~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~------------ 324 (396)
T PRK09147 261 -AALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--LD-VQLPD------------ 324 (396)
T ss_pred -HHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--cC-CCCCC------------
Confidence 8888888766654444555544444333332 23344555666666777777643 11 11222
Q ss_pred hcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 299 QWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
.+.++|+.++.+ ...+.+.+ +..++.+.+|..++...... ....+++||+++..
T Consensus 325 ----~g~f~~~~~~~~---~~~~~~~ll~~~gv~v~pg~~f~~~~~~~---------------~~~~~~iRi~~~~~ 379 (396)
T PRK09147 325 ----AGFYLWAKVPGD---DTEFARRLYADYNVTVLPGSYLAREAHGV---------------NPGAGRVRIALVAP 379 (396)
T ss_pred ----eeEEEEEECCCC---HHHHHHHHHHhCCEEEeCCccccccccCC---------------CCCCCeEEEEecCC
Confidence 256789988412 23343433 33456666665543210000 01257999999864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=257.36 Aligned_cols=274 Identities=19% Similarity=0.262 Sum_probs=196.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhC-CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEE
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEE-AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVD 126 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~-~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~ 126 (393)
..|+. ..+..+||+++|++++ .+ ++|++|+|+++ + .++.+++++||+|+++.|+|.. +...++..|++++
T Consensus 56 ~~Y~~--~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~----~~~~~~~~g~~v~ 129 (373)
T PRK07324 56 LTYGW--IEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQ----LYDIPESLGAEVD 129 (373)
T ss_pred ccCCC--CCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchh----HHHHHHHcCCEEE
Confidence 34543 3567899999999875 33 78888888765 7 7777889999999999999984 6677888999999
Q ss_pred eeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCCC----
Q psy12791 127 FVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKSL---- 192 (393)
Q Consensus 127 ~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~~---- 192 (393)
.++.+ |++++++.+.+++|+|++++||||||.+++ +++|.++|+++ |+++|+||+|....+....
T Consensus 130 ~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~-~~~ii~De~y~~l~~~~~~~s~~ 208 (373)
T PRK07324 130 YWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSV-DAYVLSDEVYRPLDEDGSTPSIA 208 (373)
T ss_pred EEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCCCCChh
Confidence 98863 678898888889999999999999999999 88889999999 9999999999875543211
Q ss_pred C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH----HHHHHHHHHHH
Q psy12791 193 P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP----CRLKEHERGSI 267 (393)
Q Consensus 193 ~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 267 (393)
. .+..++++||||.+ |++|+|+||++++ +++++.++........+.+...+.++...++... ..++...++..
T Consensus 209 ~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~ 286 (373)
T PRK07324 209 DLYEKGISTNSMSKTY-SLPGIRVGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLA 286 (373)
T ss_pred hccCCEEEEecchhhc-CCccceeEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 1 23569999999999 6999999999996 8999988877765444455555555555554432 23344455666
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~ 346 (393)
.+.++|+.++.+. +..|. .+..+++.++.. .....|.+++ +..++.+.+|..+.
T Consensus 287 ~l~~~l~~~~~~~-~~~p~----------------gg~~~~i~~~~~-~~~~~~~~~ll~~~gv~v~pg~~F~------- 341 (373)
T PRK07324 287 ILDEWVAKEPRVS-YVKPK----------------AVSTSFVKLDVD-MPSEDFCLKLLKETGVLLVPGNRFD------- 341 (373)
T ss_pred HHHHHHhcCCCce-EECCC----------------ceEEEEEEeCCC-CCHHHHHHHHHHhcCEEEECccccC-------
Confidence 7778887665543 23333 133455555311 2233444443 34456666665431
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
.++++|||++..
T Consensus 342 ----------------~~~~iRis~~~~ 353 (373)
T PRK07324 342 ----------------LEGHVRIGYCCD 353 (373)
T ss_pred ----------------CCCeEEEEecCC
Confidence 147999999863
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=261.68 Aligned_cols=315 Identities=16% Similarity=0.115 Sum_probs=208.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHh----CC--C-c-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLE----EA--K-H-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~----~~--~-~-~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.+++.+.+.+...+.. ..+.+| +.++..+||+++|+++ |. + + +|++|+|+++ + .++
T Consensus 33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~ 111 (389)
T PRK08068 33 DVINLGQGNPDQPTPEHIVEALQEAAEN-PANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELP 111 (389)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHH
Confidence 4456 55544433333444433222111 123345 3567889999999987 42 2 4 7888888765 6 667
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccCH-
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFDV- 162 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~- 162 (393)
..++++||.|++++|+|+. |...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++.
T Consensus 112 ~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~ 187 (389)
T PRK08068 112 QCLMNPGDTILVPDPGYPD----YLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKA 187 (389)
T ss_pred HHhCCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHH
Confidence 7788999999999999984 677788899999999874 5678888887789999999999999999995
Q ss_pred --HHHHHHHHhCCCcEEEEeCccCcccccC--C---CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 163 --KAISAVVKQHPDILLVLDNTFLTAYYQK--S---LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 163 --~~l~~l~~~~~~~~livDea~~~~~~~~--~---~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
++|.++|+++ ++++|+||+|.++.+.. + .. ....++++||||.+ |++|+|+||++++ +++++.+..
T Consensus 188 ~~~~l~~la~~~-~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~l~~~l~~ 264 (389)
T PRK08068 188 FFEETVAFAKKH-NIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGN-ESVIEAINL 264 (389)
T ss_pred HHHHHHHHHHHc-CeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecC-HHHHHHHHH
Confidence 5777789999 99999999998754321 1 11 13569999999999 7999999999987 889998877
Q ss_pred HHHhcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc-e
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-M 306 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~ 306 (393)
....+..+.++..+..+...+ +.+...++.+.++++.+.+.|+++ ++. +..|. ++ +
T Consensus 265 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~~~~~-----------------g~~~ 325 (389)
T PRK08068 265 LQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI-GWE-VDAPK-----------------GSFF 325 (389)
T ss_pred HHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC-----------------eeEE
Confidence 666554444433333333322 223445666667777788888765 222 22122 44 4
Q ss_pred EEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 307 LSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+|+.+++. ...+.+.+.+. ..++.+..|..+.. ..++++|++++.. . +.+.+
T Consensus 326 ~~v~~~~~-~~~~~~~~~l~~~~gi~v~pg~~f~~---------------------~~~~~iRi~~~~~-~----~~l~~ 378 (389)
T PRK08068 326 AWMPVPKG-YTSEQFADLLLEKAHVAVAPGNGFGE---------------------HGEGYVRVGLLTD-E----ERLRE 378 (389)
T ss_pred EEEECCCC-CCHHHHHHHHHHhCCEEEecchHhCc---------------------cCCCeEEEEEcCC-H----HHHHH
Confidence 79988531 12344444443 23555555543310 1157999999853 2 34555
Q ss_pred HHHHhh
Q psy12791 386 ALRKAC 391 (393)
Q Consensus 386 al~~~~ 391 (393)
+++++.
T Consensus 379 al~~l~ 384 (389)
T PRK08068 379 AVERIG 384 (389)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=257.06 Aligned_cols=315 Identities=13% Similarity=0.160 Sum_probs=213.9
Q ss_pred ceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-
Q psy12791 12 TKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V- 87 (393)
Q Consensus 12 ~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l- 87 (393)
..+...|..+.++++ +.|+||+++++...+++.+.... ...|++++..+||+++|++++.+ ++|++|+|+++ +
T Consensus 20 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~ 96 (357)
T PRK14809 20 EVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAER---VHSYPKASHADLTAALADRWDVSPEQVWLANGGDGALD 96 (357)
T ss_pred HHHHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHhh---hhcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHH
Confidence 334444556667888 89999999998776665443222 23455677889999999999976 79999999886 6
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
.++.+++++||.|++++|+|. .+...++..|.+++.++++ +.+++.+.. +++++|++++||||||.++
T Consensus 97 ~~~~~~~~~gd~V~v~~P~y~----~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~ 171 (357)
T PRK14809 97 YLARAMLDPGDTVLVPDPGFA----YYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEI 171 (357)
T ss_pred HHHHHhcCCCCEEEEeCCChH----HHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCC
Confidence 666778899999999999997 3556667788888877663 355555554 3689999999999999999
Q ss_pred CHHHHHHHHHhC-CCcEEEEeCccCcccccCC-C----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 161 DVKAISAVVKQH-PDILLVLDNTFLTAYYQKS-L----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 161 ~~~~l~~l~~~~-~~~~livDea~~~~~~~~~-~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+.+++.++++.. .+++||+||+|..+..... . ..++.++++||||.+ |++|+|+||++++ +++++.+.....
T Consensus 172 s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~-~~~~~~~~~~~~ 249 (357)
T PRK14809 172 PLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVP-EEWADAYARVNT 249 (357)
T ss_pred CHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecC-HHHHHHHHHhCC
Confidence 988888887764 2689999999998654221 1 124569999999999 6999999999997 788888876543
Q ss_pred hcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
. ...+...+..+...++. +...++...++...+.+.|... ..|. .+.++++.+
T Consensus 250 ~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~----------------~g~f~~~~~ 305 (357)
T PRK14809 250 P--FAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP------TWES----------------AGNFVLAEV 305 (357)
T ss_pred C--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc------cCCC----------------CCCEEEEEC
Confidence 2 23445555555555543 2222333333344444444321 1111 256788888
Q ss_pred cCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
. +. +.+.+.+...++.+..|..+. .+++|||+++. ++.++...++|+++
T Consensus 306 ~-~~---~~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRls~~~---~~~~~~~l~~L~~~ 354 (357)
T PRK14809 306 G-DA---SAVAEAAQERGVIVRDCTSFG-----------------------LPECIRITCGT---REETERAVEVLNEV 354 (357)
T ss_pred C-CH---HHHHHHHHHCCEEEEECccCC-----------------------CCCeEEEecCC---HHHHHHHHHHHHHH
Confidence 3 32 344455544466666554321 14799999873 34555555555544
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=260.95 Aligned_cols=312 Identities=19% Similarity=0.252 Sum_probs=227.1
Q ss_pred CCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhc
Q psy12791 19 SEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLL 94 (393)
Q Consensus 19 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~ 94 (393)
+.+++++| +.+.||+.+++.+.+++.+... ...+|+++...++|+.+|++++.+ ++|++++|+++ + .++..++
T Consensus 16 ~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~---~~~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~ 92 (346)
T TIGR01141 16 LGGKEVIKLNSNENPFGPPPKAKEALRAEAD---KLHRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL 92 (346)
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHhHH---HhhcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc
Confidence 44567888 8899999999888877665422 234566677799999999999975 77888888875 6 6666778
Q ss_pred CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
++||+|++++|+|+ .+...++..|++++.++.+ |++++++.+.+++++|++++|+||||.++|.+++.+++
T Consensus 93 ~~gd~v~~~~p~y~----~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~ 168 (346)
T TIGR01141 93 EPGDAVLVPPPTYS----MYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVL 168 (346)
T ss_pred CCCCEEEEcCCCHH----HHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999997 4666678899999999874 78999988888899999999999999999998888888
Q ss_pred HhC-CCcEEEEeCccCccccc-CCCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHH
Q psy12791 170 KQH-PDILLVLDNTFLTAYYQ-KSLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243 (393)
Q Consensus 170 ~~~-~~~~livDea~~~~~~~-~~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
+.+ .++++|+|++|..+... .+.. .+.+++++|+||++ |.+|+|+||++++ +++.+.++.....+ ..++.
T Consensus 169 ~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~~~--~~~~~ 244 (346)
T TIGR01141 169 ERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIAN-AEIIDALNKVRAPF--NLSRL 244 (346)
T ss_pred HhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecC-HHHHHHHHhccCCC--CCCHH
Confidence 764 38999999999864432 1111 23468899999999 6899999999997 88888887654433 23444
Q ss_pred HHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 244 DCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 244 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
.+..+...++. ....+++..+++..+.+.|+.++++. + .|. .+.++++.+++ ..+.
T Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-~~~----------------~g~~~~~~~~~---~~~~ 303 (346)
T TIGR01141 245 AQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLE-V-YPS----------------DANFVLIRFPR---DADA 303 (346)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-E-CCC----------------cCCEEEEecCC---CHHH
Confidence 44444444444 33445666677788888888766543 2 221 25688998853 3445
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.+.|...++.+.+|..+. +. ++++|+|++ ++++++.+.++|
T Consensus 304 ~~~~L~~~gI~v~~g~~f~---------------------~~-~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 304 LFEALLEKGIIVRDLNSYP---------------------GL-PNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred HHHHHHHCCeEEEeCCCcC---------------------CC-CCeEEEecC---CHHHHHHHHHHh
Confidence 5555555566665553321 11 589999987 566777777765
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=259.14 Aligned_cols=314 Identities=16% Similarity=0.112 Sum_probs=212.4
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC------CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE------AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~------~~-~~i~~~~G~~a-l-~~~~ 91 (393)
+.++ +.+.+++.+++.+.+.+.+.+.. ...|. +..+..++|+++|++++ .+ ++|++|+|+++ + .++.
T Consensus 33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 110 (387)
T PRK08960 33 DVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYT--AARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASS 110 (387)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccC--CCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHH
Confidence 4455 67777777776666655443221 12332 35678899999999873 33 78889998776 7 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||+|++++|+|+. +...++..|.+++.++.+ |++++++.+.++++++++++||||||.+++
T Consensus 111 ~~~~~gd~vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~ 186 (387)
T PRK08960 111 LLVDPGKHWLLADPGYPC----NRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDE 186 (387)
T ss_pred HhcCCCCEEEEcCCCCcc----hHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHH
Confidence 788999999999999985 455667778888888763 578899888888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCC----CC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKS----LP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~----~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
+++|.++|+++ ++++|+||+|..+.+... .. ....++++||||.+ |++|+|+||++++ +++++.+.......
T Consensus 187 ~~~l~~~~~~~-~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~ 263 (387)
T PRK08960 187 LAALSQALRAR-GGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAP-PAAVPELEKLAQNL 263 (387)
T ss_pred HHHHHHHHHHc-CCEEEEEccccccccCCCCCChhhccCCEEEEeeccccc-CCcccEEEEEEcC-HHHHHHHHHHHhhh
Confidence 55677778999 999999999987654321 11 13568999999999 6999999999998 78888887766555
Q ss_pred CCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 237 GVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
....+...+.++...+. .+...++.+.++++.+.+.|+.++ +..+..|. .+.++|+.+
T Consensus 264 ~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~p~----------------g~~f~~~~~ 326 (387)
T PRK08960 264 YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELG-FGIAVEPQ----------------GAFYLYADI 326 (387)
T ss_pred ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCcCCC----------------eeEEEEEec
Confidence 44455555444433332 133345555666777888887653 21111222 245678888
Q ss_pred cCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHH
Q psy12791 312 NGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383 (393)
Q Consensus 312 ~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l 383 (393)
++.......+.+.+ +..++.+.+|..++.. ..++++|++++. +.+.+.+.+
T Consensus 327 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~--------------------~~~~~iRi~~~~-~~~~l~~al 378 (387)
T PRK08960 327 SAFGGDAFAFCRHFLETEHVAFTPGLDFGRH--------------------QAGQHVRFAYTQ-SLPRLQEAV 378 (387)
T ss_pred cccCCCHHHHHHHHHHhCCEEEcCchHhCCC--------------------CCCCeEEEEecC-CHHHHHHHH
Confidence 42111234455443 3446666666544210 114799999996 444333333
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=257.96 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=217.8
Q ss_pred ccceeeccCCCC-CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhCCC-cEEEeccHHH
Q psy12791 10 FATKAVHIGSEP-DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEEAK-HGLCYSSGLG 85 (393)
Q Consensus 10 ~~~~~~~~g~~~-~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~~~-~~i~~~~G~~ 85 (393)
+.....|||++. .+.+| +.|.||+.+++.+.+.+.+.+.. +..|++ .+..++|+++|++++.+ ++|++|+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~ 85 (349)
T PRK07908 9 LAALRHHGDQDAGPGLLDFAVNVRHDTPPEWLRERLAARLGD---LAAYPSTEDERRARAAVAARHGRTPDEVLLLAGAA 85 (349)
T ss_pred HHHHHhcccccCCCCeEEecCCCCCCCCCHHHHHHHHHHhhH---hhcCCCccchHHHHHHHHHHhCcChhhEEECCCHH
Confidence 455567999994 46778 89999999998877766554322 334544 47889999999999976 7999999988
Q ss_pred H-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 86 A-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 86 a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+ +..+.. ++++ .+++..|+|.. +...++..|++++.++.+ |++ .+.+++++++++|||||||.+
T Consensus 86 ~al~~~~~-l~~~-~viv~~P~y~~----~~~~~~~~G~~i~~v~~~~~~~~d~~----~l~~~~~~i~l~np~NPTG~~ 155 (349)
T PRK07908 86 EGFALLAR-LRPR-RAAVVHPSFTE----PEAALRAAGIPVHRVVLDPPFRLDPA----AVPDDADLVVIGNPTNPTSVL 155 (349)
T ss_pred HHHHHHHh-cCCC-eEEEeCCCChH----HHHHHHHcCCEEEeeccCcccCcChh----HhccCCCEEEEcCCCCCCCCC
Confidence 7 644444 5675 56778999984 566778899999999875 233 345578999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCC--C---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--L---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
++.++|.++++ + +.++|+||+|.++....+ + ..++.++++||||.+ |++|+|+||++++ +++++.+.....
T Consensus 156 ~~~~~l~~l~~-~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~-~l~GlRiG~~~~~-~~~~~~~~~~~~ 231 (349)
T PRK07908 156 HPAEQLLALRR-P-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTW-SLAGLRVGYALGA-PDVLARLTRGRA 231 (349)
T ss_pred cCHHHHHHHHh-c-CCEEEEECcchhhccCCccccccccCCCEEEEeeccccc-CCccceeeeeecC-HHHHHHHHhcCC
Confidence 99999999996 4 678889999987543211 1 224568999999999 6999999999987 888888765443
Q ss_pred hcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
.+ ..+...+..+...++ .+...++...++++.+.+.|+.+ ++. +..|. .+.++|+
T Consensus 232 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~----------------~g~~~~~ 291 (349)
T PRK07908 232 HW--PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDPA----------------AAPFVLV 291 (349)
T ss_pred CC--CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccCC----------------CceEEEE
Confidence 32 233333333332222 23344555666777778888765 332 22222 2678999
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.++ +. +.+.+.++..++.+..|..+. +..+++||+|++. +++++++.++|++
T Consensus 292 ~~~-~~---~~~~~~l~~~gI~v~~g~~f~---------------------~~~~~~vRis~~~---~~~~~~l~~al~~ 343 (349)
T PRK07908 292 RVP-DA---ELLRKRLRERGIAVRRGDTFP---------------------GLDPDYLRLAVRP---RAEVPVLVQALAE 343 (349)
T ss_pred ECC-cH---HHHHHHHHhCCEEEEECCCCC---------------------CCCCCeEEEEeCC---CccHHHHHHHHHH
Confidence 985 32 344445544466666554431 1125899999963 4445566666665
Q ss_pred h
Q psy12791 390 A 390 (393)
Q Consensus 390 ~ 390 (393)
+
T Consensus 344 ~ 344 (349)
T PRK07908 344 I 344 (349)
T ss_pred H
Confidence 4
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=259.67 Aligned_cols=317 Identities=16% Similarity=0.119 Sum_probs=212.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC--C-c-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA--K-H-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~--~-~-~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.+++.+.+.+.+.+.. ....+|++ .+..+||+++|+++ |. + + .|++|+|+++ + .++
T Consensus 32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~ 110 (385)
T PRK09276 32 DVISLGIGDPDLPTPDHIIEAMCKAVED-PENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIP 110 (385)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhC-CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHH
Confidence 4566 77788887766655544332211 11234444 35788999999987 33 2 3 5888899876 7 666
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
..++++||.|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 111 ~~~~~~gd~Vl~~~P~y~~----~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~ 186 (385)
T PRK09276 111 LAFVNPGDVVLVPDPGYPV----YKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLE 186 (385)
T ss_pred HHhCCCCCEEEEcCCCCcC----hHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHH
Confidence 6788999999999999984 677788899999988763 577888888778999999999999999999
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC----CC---C--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL---P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~----~~---~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|.++|+++ +++||+||+|..+.+.. ++ + .+..++++||||.+ |++|+|+||++++ +++++.+..
T Consensus 187 ~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~-~~l~~~~~~ 263 (385)
T PRK09276 187 FFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGN-ADLIAGLGK 263 (385)
T ss_pred HHHHHHHHHHHC-CcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCC-HHHHHHHHH
Confidence 57888888999 99999999999765421 11 1 23468999999999 7999999999987 888888877
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.........+...+..+...++. ++..++.+.+++..+.+.|++. ++. +..|. .+.++
T Consensus 264 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~----------------~~~~~ 325 (385)
T PRK09276 264 VKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLE-VEPPK----------------ATFYV 325 (385)
T ss_pred HHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEE
Confidence 66544444444444444444432 2334455566677778888764 222 21121 13347
Q ss_pred EEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
|+.+++. .....+.+.+ +..++.+..|..+.. ..++++|||++. +. +.+.++
T Consensus 326 ~v~~~~~-~~~~~l~~~ll~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~-~~----~~l~~~ 378 (385)
T PRK09276 326 WAPVPKG-YTSAEFATLLLDKAGVVVTPGNGFGE---------------------YGEGYFRIALTV-PD----ERIEEA 378 (385)
T ss_pred EEECCCC-CCHHHHHHHHHHhCCEEECCchhhCC---------------------CCCCeEEEEeCC-CH----HHHHHH
Confidence 8888531 1223333333 223555555443210 114799999984 33 255666
Q ss_pred HHHhhc
Q psy12791 387 LRKACK 392 (393)
Q Consensus 387 l~~~~~ 392 (393)
++.+.+
T Consensus 379 l~~l~~ 384 (385)
T PRK09276 379 VERIKK 384 (385)
T ss_pred HHHHhh
Confidence 665543
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=258.02 Aligned_cols=304 Identities=12% Similarity=0.089 Sum_probs=212.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh--------CCC--cEEEeccHHHH-H-H
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE--------EAK--HGLCYSSGLGA-V-T 88 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~--------~~~--~~i~~~~G~~a-l-~ 88 (393)
+.++ +.+++|+.+++.+.+++.+...... .|++ .+..+||+++|+++ +.+ ++|++|+|+++ + .
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~---~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~ 105 (393)
T TIGR03538 29 PPIALSIGEPKHPTPAFVLEALRENLHGLS---TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA 105 (393)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhccC---CCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH
Confidence 4556 7889999888777776654432223 3443 45789999999987 233 37999999886 6 6
Q ss_pred HHHHhcCCCCe--EEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 89 AVTHLLSAGDH--IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 89 ~~~~~~~~gd~--vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
++..++++||. |++++|+|.. |...++..|++++.++.+ |++++++.+.+++++|++++||||||.+
T Consensus 106 ~~~~l~~~gd~~~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~ 181 (393)
T TIGR03538 106 FAQAVINPGQAPLVVMPNPFYQI----YEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAV 181 (393)
T ss_pred HHHHHcCCCCcceEEecCCCCcc----hHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcc
Confidence 66778899986 9999999984 677788899999999873 5788888877789999999999999999
Q ss_pred cC---HHHHHHHHHhCCCcEEEEeCccCcccccC---CC------------CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 160 FD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---SL------------PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 160 ~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---~~------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
++ +++|.++|+++ +++||+||+|..+.+.. +. ...+.++++||||.+ |.+|+|+||++++
T Consensus 182 ~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~~i~~ 259 (393)
T TIGR03538 182 LSLDTLKKLIELADQY-GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGFVAGD 259 (393)
T ss_pred cCHHHHHHHHHHHHHC-CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEEEecC
Confidence 99 77888888999 99999999999765431 11 123469999999998 6999999999997
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhh
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~ 298 (393)
+++++++.......+...+...+..+...+.. +...++.+.++...+.+.|+.+ +. +..|.
T Consensus 260 -~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p~------------ 323 (393)
T TIGR03538 260 -AEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--LD-LELPD------------ 323 (393)
T ss_pred -HHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--Cc-ccCCC------------
Confidence 88888887666544444455444443333322 3344555666777777777653 11 11222
Q ss_pred hcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 299 QWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
.|.++|+.++.+ ...+.+.+ +..++.+.+|..+...... .....+++|||++.
T Consensus 324 ----gg~f~~~~~~~~---~~~~~~~l~~~~gV~v~pg~~f~~~~~~---------------~~~~~~~~Ris~~~ 377 (393)
T TIGR03538 324 ----AGFYLWPKVPGD---DEAFARALYEEENVTVLPGRFLAREAEG---------------VNPGEGRVRIALVA 377 (393)
T ss_pred ----eeEEEEEECCCC---HHHHHHHHHHHCCEEEeCCccccccccC---------------CCCCCCEEEEEecC
Confidence 256789998512 23455444 3456777777654321000 00125799999986
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=257.78 Aligned_cols=304 Identities=16% Similarity=0.185 Sum_probs=208.1
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHhC------CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLEE------AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~~------~~-~~i~~~~G~~a-l-~~~~ 91 (393)
+.+| +.+.+++.+++.+.++..+.... ....|+++ +..+||+++|++++ .+ ++|++|+|+++ + .++.
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 107 (384)
T PRK06348 30 DIIDLSLGDPDLITDESIINAAFEDAKK--GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQ 107 (384)
T ss_pred CcEEcCCCCCCCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHH
Confidence 4567 67777776655544432221111 12334443 56789999999872 33 78999999876 7 6677
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+++++||+|++++|+|.. +...++..|.+++.++.. |++++++.+.+++++|++++||||||.+++
T Consensus 108 ~~~~~gd~vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~ 183 (384)
T PRK06348 108 SILDPGDEVIIHEPYFTP----YKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKET 183 (384)
T ss_pred HhcCCCCEEEEeCCCCcc----hHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHH
Confidence 789999999999999985 677778889998888752 678999988888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC---C---CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK---S---LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~---~---~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ +++||+||+|.++.+.. + +. .++.++++||||.+ |+||+|+||++++ +++.+.+....
T Consensus 184 ~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~-~~~~~~~~~~~ 260 (384)
T PRK06348 184 LEEIAKIAIEY-DLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAP-DYIIETAKIIN 260 (384)
T ss_pred HHHHHHHHHHC-CeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhcc-CCccccceeeecC-HHHHHHHHHHH
Confidence 67788889999 99999999999875432 1 11 24579999999999 6999999999997 88888887766
Q ss_pred HhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
.......+...+..+...++. +...++.+.++++.+.+.|+.++++. +..|. .+.++|+
T Consensus 261 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~~p~----------------gg~~~~~ 323 (384)
T PRK06348 261 EGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLS-LHPPK----------------GSIYAFI 323 (384)
T ss_pred HhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCce-eccCC----------------eeEEEEE
Confidence 654445555555554444433 22334455566677788887655432 22222 1335788
Q ss_pred EEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 310 YVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
.++........+.+.+ +..++.+.+|..+.. ..+++||+|++.
T Consensus 324 ~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~ 367 (384)
T PRK06348 324 NIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE---------------------SGEGYIRLACTV 367 (384)
T ss_pred ecccCCCCHHHHHHHHHHhCCEEEcCchhhcc---------------------CCCCeEEEEecC
Confidence 8852111223344333 334566666654321 115799999974
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=252.86 Aligned_cols=315 Identities=19% Similarity=0.220 Sum_probs=228.2
Q ss_pred CCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH
Q psy12791 6 QDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG 83 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G 83 (393)
||+.+..++...|.+..+.++ +.+.||+.++ . ... ....+.+|+++...++|+.+|++++.+ +.|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~---~~~~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G 72 (330)
T TIGR01140 1 HGGNLRRAAARYGIPPEDWLDFSTGINPLGPP--V---PPI---PASAWARYPDPEYDELRAAAAAYYGLPAASVLPVNG 72 (330)
T ss_pred CCccHHHHHHHcCCChhheeEccccCCCCCCC--h---hhc---chHHHhhCCCccHHHHHHHHHHHhCCChhhEEECCC
Confidence 577788888889988888888 8888998775 1 111 234577787777899999999999986 89999999
Q ss_pred HHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 84 LGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 84 ~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
+++ +.++..++.+| .|++++|+|.. +...++..|++++.++ |++++++.+ .++++|++++|+||||.+++
T Consensus 73 ~~~~i~~~~~~l~~g-~vl~~~p~y~~----~~~~~~~~g~~~~~~~--d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~ 144 (330)
T TIGR01140 73 AQEAIYLLPRLLAPG-RVLVLAPTYSE----YARAWRAAGHEVVELP--DLDRLPAAL-EELDVLVLCNPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHHHHHHhCCC-eEEEeCCCcHH----HHHHHHHcCCEEEEeC--CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCH
Confidence 887 55555667778 69999999984 6777888999999998 899999888 46889999999999999999
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccCCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+++|.++|+++ |+++|+||+|..+....+. ..+++++++|+||++ |++|+|+||++++ +++++.+.....
T Consensus 145 ~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~-~~~~~~l~~~~~ 221 (330)
T TIGR01140 145 ETLLALAARLRAR-GGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFF-GLAGLRLGFVVAH-PALLARLREALG 221 (330)
T ss_pred HHHHHHHHHhHhc-CCEEEEECcccccCCccchhhHhccCCCEEEEEecchhh-cCchhhhhheeCC-HHHHHHHHhcCC
Confidence 66677888899 9999999999876543221 125679999999999 6999999999997 778888775543
Q ss_pred hcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
.+ ..+...+..+...++. ....+++..++.+.+.+.|+.++.+. + .+. .+.++|+.+
T Consensus 222 ~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~----------------~~~f~~~~~ 281 (330)
T TIGR01140 222 PW--TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLE-V-VGG----------------TALFLLVRT 281 (330)
T ss_pred CC--CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCce-E-CCC----------------CCeEEEEEc
Confidence 32 3344455554444443 23345566677778888888765432 1 122 256788888
Q ss_pred cCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+ +. ..+.+.+...++.+..|..+. +...++||++++..+ +. +.+..+|
T Consensus 282 ~-~~---~~l~~~l~~~gi~v~pg~~f~---------------------~~~~~~iRi~~~~~~--~~-~~~~~~l 329 (330)
T TIGR01140 282 P-DA---AALHEALARRGILIRDFDNFP---------------------GLDPRYLRFALPTDE--EN-DRLEEAL 329 (330)
T ss_pred C-CH---HHHHHHHHHCCEEEEECCCCC---------------------CCCCCEEEEEecCHH--HH-HHHHHhh
Confidence 4 32 234444444456555554431 112579999997544 33 6666655
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=255.46 Aligned_cols=296 Identities=19% Similarity=0.203 Sum_probs=206.2
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC--C-c-EEEeccHHHH-H-HHHHHhcC
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA--K-H-GLCYSSGLGA-V-TAVTHLLS 95 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~--~-~-~i~~~~G~~a-l-~~~~~~~~ 95 (393)
+...+++.+++.+.+.+.+.... ...|++ .+..+||+++++++ |. + + +|++|+|+++ + .++..+++
T Consensus 6 ~~g~p~~~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~ 82 (350)
T TIGR03537 6 GTGDPKEPTPPFIRKALIDAVPE---VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFID 82 (350)
T ss_pred cCCCCCCCCCHHHHHHHHHHHhc---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcC
Confidence 34445555566566555433222 334544 45789999999986 53 2 4 8999999886 6 66667788
Q ss_pred CC---CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---H
Q psy12791 96 AG---DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---V 162 (393)
Q Consensus 96 ~g---d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~ 162 (393)
+| |.|++++|+|.. +...++..|++++.++.+ |++++++++.++++++++++||||||.+++ +
T Consensus 83 ~g~~~d~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~ 158 (350)
T TIGR03537 83 PEEDRRRVIFGTPGYPV----YERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYL 158 (350)
T ss_pred CCCCCceEEEcCCCCcc----hHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHH
Confidence 77 699999999984 777788999999999873 678899888888999999999999999999 7
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccCCC------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSL------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~~~------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
++|.++|+++ ++++|+||+|..+.+..+. ..++.++++|+||.+ |++|+|+||++++ +++.+.++.....+
T Consensus 159 ~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~-~~~~~~~~~~~~~~ 235 (350)
T TIGR03537 159 KETIAMCREH-GIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGD-EKLISFLRKLRANF 235 (350)
T ss_pred HHHHHHHHHc-CcEEEEeccccccccCCCCCchhhcCcCCEEEEeeccccc-CCccccceeeecC-HHHHHHHHHHHHhh
Confidence 8888889999 9999999999875433211 234569999999999 7999999999986 88888888766655
Q ss_pred CCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 237 GVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
+...+...+..+...+. .+...++.+.++...+.+.|+.. ++. +..|. .+.++|+.+++
T Consensus 236 ~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~----------------g~~~~~~~~~~ 297 (350)
T TIGR03537 236 GVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPD----------------ATFYLWVKVPS 297 (350)
T ss_pred ccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC----------------eEEEEEEECCC
Confidence 55555444333333332 23445556666777777777754 221 22222 13457888853
Q ss_pred CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 314 GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
......+.+.|...++.+..|..+... .++++|++++
T Consensus 298 -~~~~~~l~~~L~~~gv~v~~g~~f~~~---------------------~~~~~Ri~~~ 334 (350)
T TIGR03537 298 -GIDAKDYALRLLENGIVVAPGENFGSG---------------------EEGYVRVALV 334 (350)
T ss_pred -CCCHHHHHHHHHHCCEEEcCchhhCCC---------------------CCCEEEEEec
Confidence 223345555554456666665443110 1579999996
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=261.66 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=204.1
Q ss_pred CCC-chHHHHHHHHHHHhCC----CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 56 SNN-PTRRNLERCIASLEEA----KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 56 ~~~-~~~~~lr~~la~~~~~----~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
|++ .+..+||++++++++. +++|++|+|+++ + .++.+++++||.|++++|+|+ .+...++..|++++.+
T Consensus 117 Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~----~~~~~~~~~g~~~~~v 192 (431)
T PRK15481 117 YGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFL----SSINMLRYAGFSASPV 192 (431)
T ss_pred cCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcH----HHHHHHHHcCCeEEee
Confidence 444 3467899999999762 358999999886 6 677788999999999999998 4788889999999999
Q ss_pred CCC----CHHHHHhhcCCCCcEEEEe-cCCCCcccccCHH---HHHHHHHhCCCcEEEEeCccCcccccC---CC--CCc
Q psy12791 129 DLR----KIENLIKYIKPNTKMVWIE-NPTNPLMTVFDVK---AISAVVKQHPDILLVLDNTFLTAYYQK---SL--PWG 195 (393)
Q Consensus 129 ~~~----d~~~l~~~l~~~~~~v~l~-~p~nptG~~~~~~---~l~~l~~~~~~~~livDea~~~~~~~~---~~--~~~ 195 (393)
+.+ |++++++++++++++++++ +||||||.+++.+ +|.++|+++++++||+||+|.++.+.. .+ ...
T Consensus 193 ~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 272 (431)
T PRK15481 193 SVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQ 272 (431)
T ss_pred ccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCC
Confidence 885 6889998887789999986 9999999999965 889999887689999999999765321 11 224
Q ss_pred CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHH
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEV 269 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l 269 (393)
+.++++||||.+ | ||+|+||++++ +++.+.+...........+...+.++...++. +...++.+.++++.+
T Consensus 273 ~vi~~~SfSK~~-~-~GlRiG~~i~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~ 349 (431)
T PRK15481 273 RWALIRSVSKAL-G-PDLRLAFVASD-SATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKL 349 (431)
T ss_pred CEEEEeeecccc-C-CCceeEEEeCC-HHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 679999999999 7 89999999997 88888886555443334555555555444432 233455666777788
Q ss_pred HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccC
Q psy12791 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTH 349 (393)
Q Consensus 270 ~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~ 349 (393)
.+.|+.. ++. +..|. .|.++|+.++.+ ...+.+.+...++.+.+|..|...
T Consensus 350 ~~~L~~~-~~~-~~~p~----------------gg~f~~~~l~~~---~~~~~~~l~~~gV~v~pg~~f~~~-------- 400 (431)
T PRK15481 350 ARALQQY-GIA-IPSPG----------------DGLNLWLPLDTD---SQATALTLAKSGWLVREGEAFGVS-------- 400 (431)
T ss_pred HHHHHHc-CCc-cccCC----------------CeEEEEEECCCC---HHHHHHHHHHCCcEEecCCccccC--------
Confidence 8888764 221 21232 256789998532 234444444456777666554211
Q ss_pred CCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 350 KSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 350 ~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+++|||++..+. ++++...+.|.++
T Consensus 401 ------------~~~~~iRis~~~~~~-~~i~~~~~~l~~~ 428 (431)
T PRK15481 401 ------------APSHGLRITLSTLND-AEINRLAADLHQA 428 (431)
T ss_pred ------------CCCCeEEEEcCCCCh-HHHHHHHHHHHHH
Confidence 014689999998664 3344444444443
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=257.87 Aligned_cols=318 Identities=17% Similarity=0.192 Sum_probs=215.6
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~~~ 91 (393)
++++ +.+.+|+.+++.+.+.+.+.+... ..|. +..+..+||+++|+++ | .+ +.|++++|+++ + .++.
T Consensus 25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~ 102 (382)
T PRK06108 25 GVLPLWFGESDLPTPDFIRDAAAAALADGETFYT--HNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQ 102 (382)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHH
Confidence 5566 788888877777666554432221 2233 2357788999999875 5 33 67888888765 7 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
.++++||.|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 103 ~l~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~ 178 (382)
T PRK06108 103 ALVGPGDEVVAVTPLWPN----LVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRD 178 (382)
T ss_pred HhcCCCCEEEEeCCCccc----hHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHH
Confidence 788999999999999984 566778889999988773 578899888888999999999999999997
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCccccc-C-C----CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQ-K-S----LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~-~-~----~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ ++++|+||+|..+.+. . . .. ..+.++++||||.+ |++|+|+||++++ +++++.+.
T Consensus 179 ~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~-~~~~~~~~ 255 (382)
T PRK06108 179 DLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAP-PALGQVLE 255 (382)
T ss_pred HHHHHHHHHHHC-CcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCC-HHHHHHHH
Confidence 67788889999 9999999999987543 1 1 11 13569999999999 6999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
..........+...+.++...++. +...+++..++.+.+.+.|+.++++. +..|. .+.+
T Consensus 256 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~----------------~g~~ 318 (382)
T PRK06108 256 KLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVE-VAKPD----------------GAMY 318 (382)
T ss_pred HHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCC----------------eeEE
Confidence 655443344455554444444332 33445556666777788887665433 11121 1345
Q ss_pred EEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 307 LSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+++.+++ ......+.+.+ +..++.+.+|..+. . ..++++|+|++. + ++.++...+
T Consensus 319 ~~~~l~~-~~~~~~~~~~ll~~~gV~v~pg~~f~---~------------------~~~~~~Ris~~~-~-~~~l~~~l~ 374 (382)
T PRK06108 319 AFFRIPG-VTDSLALAKRLVDEAGLGLAPGTAFG---P------------------GGEGFLRWCFAR-D-PARLDEAVE 374 (382)
T ss_pred EEEeCCC-CCCHHHHHHHHHHhCCEEEeCchhhC---C------------------CCCCEEEEEecC-C-HHHHHHHHH
Confidence 7888842 11233444443 33355555554331 0 125899999998 4 443444444
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
.|+++
T Consensus 375 ~l~~~ 379 (382)
T PRK06108 375 RLRRF 379 (382)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=256.65 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=188.8
Q ss_pred cCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHH
Q psy12791 17 IGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTH 92 (393)
Q Consensus 17 ~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~ 92 (393)
.+..++++++ +.|.+++++++.+.+++.+... .+..|++++..++|+++|++++.+ ++|++++|+++ + .++..
T Consensus 17 ~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~---~~~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~ 93 (352)
T PRK03321 17 PGKTVPGAIKLSSNETPFGPLPSVRAAIARAAA---GVNRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQA 93 (352)
T ss_pred CCCCcccceeccCCCCCCCCCHHHHHHHHHHHH---hcCcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHH
Confidence 3333456778 8899999888877776654322 234566788999999999999976 68999999998 5 55566
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
++++||+|+++.|+|. .+...++..|.+++.++.+ |++++++.+.+++++|++++|+||||.++|.+++.+
T Consensus 94 ~~~~gd~Vli~~p~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~ 169 (352)
T PRK03321 94 TAGPGDEVIFAWRSFE----AYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELAR 169 (352)
T ss_pred hcCCCCEEEeCCCCHH----HHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 7899999999999997 3566678889999999875 688999988888999999999999999999999999
Q ss_pred HHHhC-CCcEEEEeCccCcccccCC----C----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC
Q psy12791 168 VVKQH-PDILLVLDNTFLTAYYQKS----L----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 168 l~~~~-~~~~livDea~~~~~~~~~----~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
+++.+ .++++|+||+|.++.+... + ..+..++++||||.+ |++|+|+||++++ +++++.+..... ..
T Consensus 170 l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~-~~~~~~~~~~~~--~~ 245 (352)
T PRK03321 170 FLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAY-GLAGLRVGYAVGH-PEVIAALRKVAV--PF 245 (352)
T ss_pred HHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHh-hhHHHhhhhhcCC-HHHHHHHHHhcC--CC
Confidence 99873 2899999999987654321 1 124569999999999 6999999999997 889888876532 33
Q ss_pred CCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 239 VPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
..+...+..+...+.. +.+++++..+++..+.+.|+..
T Consensus 246 ~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~ 286 (352)
T PRK03321 246 SVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA 286 (352)
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4455555544444433 3334444455556667777653
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=255.93 Aligned_cols=319 Identities=16% Similarity=0.179 Sum_probs=212.6
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHH----hCCC----cEEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASL----EEAK----HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~----~~~~----~~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.+++.+.+.+.+..... ..+| +..+..+||++++++ +|.+ +.+++|+|+++ + .++
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 30 DALNLSQGAPNFAPDPALVEGVARAMRDG--HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHHhC--CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 4566 677778776666655543322111 2234 345677888888875 4653 46777777665 7 777
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.+++.+||+|++++|+|.. +...++..|.+++.++.+ |++.+++.+.+++++|++++||||||.+++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~ 183 (384)
T PRK12414 108 SALVHPGDEVIYFEPSFDS----YAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAAD 183 (384)
T ss_pred HHhcCCCCEEEEeCCCccc----hHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHH
Confidence 7889999999999999985 566677789999888764 678899988888999999999999999997
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----CCC-----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----SLP-----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~~~-----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ ++++|+||+|..+.+.. ++. .++.++++||||.+ |+||+|+||++++ +++++.+...
T Consensus 184 ~~~i~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~-~~l~~~l~~~ 260 (384)
T PRK12414 184 LARLAQLTRNT-DIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAP-AELMDEIRKV 260 (384)
T ss_pred HHHHHHHHHHC-CeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccc-cCccceEEEEecC-HHHHHHHHHH
Confidence 77788888999 99999999999765431 111 13569999999999 7999999999997 7888888776
Q ss_pred HHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
........+...+.++...++. ....++.+.++++.+.+.|+.+. +. +..+. .+.++|+
T Consensus 261 ~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~-~~~~~----------------gg~~~~~ 322 (384)
T PRK12414 261 HQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR-FE-LLPSE----------------GSFFMLA 322 (384)
T ss_pred HhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC-Ce-ecCCC----------------cceEEEE
Confidence 6544444444444444444432 22344556677777888887652 22 22221 1345676
Q ss_pred EEcC--CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 310 YVNG--GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 310 ~~~~--~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.+++ .....+.+...+...++.+.+|..+... +...+++|||++. .. +.+.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~-------------------~~~~~~iRis~~~-~~----~~~~~~~ 378 (384)
T PRK12414 323 RFRHFSDESDSDFVLRLIRDARVATIPLSAFYTD-------------------GTDTGLIRLSFSK-DD----ATLVEGA 378 (384)
T ss_pred cccccCCCCHHHHHHHHHHhCCEEEecchhhcCC-------------------CCCCCEEEEEecC-CH----HHHHHHH
Confidence 7632 1112233334444456666666544211 1125799999996 32 3555555
Q ss_pred HHhhc
Q psy12791 388 RKACK 392 (393)
Q Consensus 388 ~~~~~ 392 (393)
+.+.+
T Consensus 379 ~rl~~ 383 (384)
T PRK12414 379 RRLCS 383 (384)
T ss_pred HHHhh
Confidence 55543
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=259.81 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=205.2
Q ss_pred CCCCCCC-CCCCCCCccCCeeeeCCCCCC-C----------CCccccCCCCc-hHHHHHHHHHHHhC--------CC-cE
Q psy12791 20 EPDQWRS-QCVIPPIILSTTFKQNTPGQP-P----------QGFEYSRSNNP-TRRNLERCIASLEE--------AK-HG 77 (393)
Q Consensus 20 ~~~~~~~-~~~~~p~~~~~~~~~~~~~~~-~----------~~~~y~~~~~~-~~~~lr~~la~~~~--------~~-~~ 77 (393)
.|..+|+ +.++||+.. ....+..... . ......+|+++ +..+||+++|++++ .+ ++
T Consensus 36 ~p~g~i~L~~~En~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~ 113 (468)
T PLN02450 36 NPSGIIQMGLAENQLSF--DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNK 113 (468)
T ss_pred CCCeeEEeehhHhHhhH--HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHH
Confidence 3556777 888888765 2222221110 0 01223445544 67789999999874 23 68
Q ss_pred EEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCCcEEEeeCCC-------CHHHHHhhcCC-----
Q psy12791 78 LCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIGLEVDFVDLR-------KIENLIKYIKP----- 142 (393)
Q Consensus 78 i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~v~~~~~~-------d~~~l~~~l~~----- 142 (393)
|++|+|+++ + .++.+++++||.|++++|+|+. +...+. ..|++++.++.+ |++++++.+.+
T Consensus 114 Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~----~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~ 189 (468)
T PLN02450 114 LVLTAGATSANETLMFCLAEPGDAFLLPTPYYPG----FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLN 189 (468)
T ss_pred eEEccChHHHHHHHHHHhCCCCCEEEECCCCCCc----hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcC
Confidence 999999887 6 6677788999999999999985 555555 589999998863 56777777643
Q ss_pred -CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-C----C------------CCcCcEEEE
Q psy12791 143 -NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-S----L------------PWGVDIVLY 201 (393)
Q Consensus 143 -~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~----~------------~~~~di~~~ 201 (393)
++++|+++|||||||.+++ +++|.++|+++ +++||+||+|+.+.+.. + + .....++++
T Consensus 190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~ 268 (468)
T PLN02450 190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVY 268 (468)
T ss_pred CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEE
Confidence 6899999999999999998 66778888899 99999999999754321 1 0 124569999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHh
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT-------LPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~ 274 (393)
||||.+ |++|+|+||++++++.+.+.+..... .+ ..+...+.++...++. +...++++.++++.+.+.|+
T Consensus 269 S~SK~~-~l~GlRiG~li~~~~~l~~~~~~~~~-~~-~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~ 345 (468)
T PLN02450 269 SLSKDL-GLPGFRVGAIYSNDEMVVSAATKMSS-FG-LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLE 345 (468)
T ss_pred eccccC-CCCCccEEEEEECCHHHHHHHHHHhh-cC-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 69999999999985666666655433 22 2344455555444433 23345666677777888887
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---C--HHHHHHHHHhc-CccccccccCCccccccCccccc
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---G--AEETRIFLESL-LIFRCAESLGGIESLADLPAEMT 348 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~ 348 (393)
.+ ++. +..|. .|.++|+.++. + .+....+.+.+ ...++.+.+|..+..
T Consensus 346 ~~-gi~-~~~~~----------------~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~-------- 399 (468)
T PLN02450 346 AA-GIK-CLKSN----------------AGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC-------- 399 (468)
T ss_pred Hc-CCc-ccCCC----------------ceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC--------
Confidence 65 332 21121 13478888841 1 11222333333 345677777755421
Q ss_pred CCCCChhhHhhcCCCCCeEEEEecCCCh
Q psy12791 349 HKSIPKETRDALGITDNLVRLSVGVEGY 376 (393)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~iRls~~~~~~ 376 (393)
..++++||+++..+.
T Consensus 400 -------------~~~g~~Rl~f~~~~~ 414 (468)
T PLN02450 400 -------------TEPGWFRVCFANMSE 414 (468)
T ss_pred -------------CCCCEEEEEecCCCH
Confidence 125899999996443
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=258.62 Aligned_cols=303 Identities=14% Similarity=0.167 Sum_probs=208.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC----C---C-cEEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE----A---K-HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~----~---~-~~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.++..+.+.+.+.+.. .+..| +.++..++|+++|++++ . + +.|++|+|+++ + .++
T Consensus 21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 98 (378)
T PRK07682 21 GVISLGVGEPDFVTPWNVREASIRSLEQ--GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM 98 (378)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH
Confidence 4566 77888876554444433222211 12334 34788999999999874 2 2 37888898765 7 667
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
..++++||.|++++|+|+. +...++..|.+++.++.+ |++++++++.+++++|++++||||||.+++
T Consensus 99 ~~l~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~ 174 (378)
T PRK07682 99 RAIINPGDEVLIVEPSFVS----YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKS 174 (378)
T ss_pred HHhCCCCCEEEEeCCCchh----hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHH
Confidence 7788999999999999984 666777789998888752 689999998888999999999999999997
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccCC------CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQKS------LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~~------~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ ++++|+||+|..+.+..+ +. ....++++||||.+ |+||+|+||++++ +++++.+...
T Consensus 175 ~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~-~~~i~~l~~~ 251 (378)
T PRK07682 175 ELEEIAVIVEKH-DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAP-VYFSEAMLKI 251 (378)
T ss_pred HHHHHHHHHHHc-CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccc-cChhhhhhhhhcC-HHHHHHHHHH
Confidence 77888999999 999999999998764321 11 14579999999999 6999999999997 8898988766
Q ss_pred HHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
........+...+..+...++. +...++.+.+++..+.+.|+++ ++. +..|. .+.++|
T Consensus 252 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~----------------g~~~~~ 313 (378)
T PRK07682 252 HQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLT-CHVPG----------------GAFYAF 313 (378)
T ss_pred HHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cCCCC----------------eeEEEE
Confidence 5543344445554444444432 3444555667777888888765 222 22222 134567
Q ss_pred EEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 309 FYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
+.+.........+.+.+ +..++.+..|..+.. ..++++|||++.
T Consensus 314 ~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~ 358 (378)
T PRK07682 314 PSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGE---------------------SGEGFIRCSYAT 358 (378)
T ss_pred EeccCCCCCHHHHHHHHHHhCCEEEcCchhhCc---------------------CCCCeEEEEeCC
Confidence 77632111234455443 344666666654310 115899999996
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=259.51 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=197.1
Q ss_pred CCchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
+..+..+||+++|++++ . +++|++|+|+++ + .++..++++||.|++++|+|+. |...++..|++++.
T Consensus 106 ~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~----y~~~~~~~g~~~~~ 181 (462)
T PLN02187 106 PGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPH----YDARAAYSGLEVRK 181 (462)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcc----HHHHHHHcCCEEEE
Confidence 45678899999999874 2 378999999876 7 6777888999999999999984 66677889999998
Q ss_pred eCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-C---CC
Q psy12791 128 VDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-S---LP 193 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~---~~ 193 (393)
+++. |++++++++.+++++++++|||||||.+++ +++|.++|+++ +++||+||+|.++.+.. + +.
T Consensus 182 ~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~~~~s~~ 260 (462)
T PLN02187 182 FDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKL-GIMVISDEVYDRTIFGDNPFVSMG 260 (462)
T ss_pred EeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCceeHH
Confidence 8762 689999998888999999999999999998 77888889999 99999999999865431 1 11
Q ss_pred -C---cCcEEEEcccccccCCCCceEEEEEecChH-H---HHHHHHHHHhcCC--CCCHHHHHHHHhccC-----CHHHH
Q psy12791 194 -W---GVDIVLYSLTKYMNGHSDVVMGATVTNDDS-L---QARLKFLQNSMGV--VPSPFDCWLVTRGLK-----TLPCR 258 (393)
Q Consensus 194 -~---~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~ 258 (393)
. ...++++||||.| ++||+|+||+++++++ + ++.+......+.. .++...+.++...++ .+...
T Consensus 261 ~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~ 339 (462)
T PLN02187 261 KFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKK 339 (462)
T ss_pred HhccCCcEEEEecchhhc-CCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 2469999999999 6999999999985443 3 3455554444333 234444444444442 23445
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC----H-HHHHHHHHhcCccccccc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG----A-EETRIFLESLLIFRCAES 333 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~ 333 (393)
++.+.++++.+.+.|+.++.+..+..|. .+.++++.+... . ...+.+...+...++.+.
T Consensus 340 ~~~l~~~r~~l~~~L~~~~~~~~~~~P~----------------gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~ 403 (462)
T PLN02187 340 NKILKHNVDLVCDRLKDIPCVVCPKKPE----------------SCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFL 403 (462)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCCCCCC----------------EeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEE
Confidence 5666677788888888765432122232 245677776310 0 122222333344566666
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC--hHHHHHHHHHHHH
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG--YTDLIADLDQALR 388 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~--~~~~i~~l~~al~ 388 (393)
+|..+. .+++|||+++... .++-++++.+.++
T Consensus 404 pG~~fg-----------------------~~~~iRis~~~~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 404 PGDALG-----------------------LKNWMRITIGVEAHMLEDALERLKGFCT 437 (462)
T ss_pred CccccC-----------------------CCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 665431 1589999998641 2333344444443
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=255.27 Aligned_cols=321 Identities=17% Similarity=0.179 Sum_probs=214.6
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSA 96 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~ 96 (393)
.+.++ +.+.|++++++.+.+.+.+.+.. ..+..|+++ +..++|+++|+++|.+ +++++++|+++ + .++..++.+
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~ 106 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEE-GEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSP 106 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc-CCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCC
Confidence 45666 78899998888887765443221 123345443 5789999999999986 57777777665 7 666677889
Q ss_pred CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHH
Q psy12791 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAI 165 (393)
Q Consensus 97 gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l 165 (393)
||+|++++|+|.. +...++..|++++.++.+ |++++++.+.+++++|++++|+||||.+++ +++|
T Consensus 107 gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i 182 (380)
T PRK06225 107 GDNAVTPDPGYLI----IDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEF 182 (380)
T ss_pred CCEEEEcCCCCcc----hHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHH
Confidence 9999999999984 566678889999988752 678899988888999999999999999997 7788
Q ss_pred HHHHHhCCCcEEEEeCccCcccccCC----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQKS----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~~----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
.++|+++ |+++|+||+|..+....+ ......+++.||||++ |++|+|+||++++ +++++.++...... ...+
T Consensus 183 ~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~-~~l~~~~~~~~~~~-~~~~ 258 (380)
T PRK06225 183 AEIARDN-DAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVAT-PDLIEVVKSIVIND-LGTN 258 (380)
T ss_pred HHHHHHC-CcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecC-HHHHHHHHHHHhcc-cCCC
Confidence 8889999 999999999976433221 1224678999999999 7999999999997 78888877654322 2233
Q ss_pred HHHHHHHHhccCC---HHHH-HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH
Q psy12791 242 PFDCWLVTRGLKT---LPCR-LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE 317 (393)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
...+..+...++. +..+ .+...++...+.+.|++++++.....|. .++++++.+......
T Consensus 259 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~ 322 (380)
T PRK06225 259 VIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS----------------HGNMMVIDISEAGID 322 (380)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCC----------------CCeEEEEEcccccCC
Confidence 4444333333322 2222 2233344556677777655432111121 256788887421123
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
...+.+.+...++.+..|..++ . +..++++|+|++. ++++++.+.++|++
T Consensus 323 ~~~l~~~l~~~gi~v~~g~~~~---~-----------------~~~~~~iR~s~~~--~~e~l~~~~~~l~~ 372 (380)
T PRK06225 323 PEDLVEYLLERKIFVRQGTYTS---K-----------------RFGDRYIRVSFSI--PREQVEVFCEEFPD 372 (380)
T ss_pred HHHHHHHHHHCCEEEcCCcccC---c-----------------CCCCceEEEEeCC--CHHHHHHHHHHHHH
Confidence 3445555544456655543221 0 0125799999986 34445555544443
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=256.79 Aligned_cols=286 Identities=17% Similarity=0.219 Sum_probs=199.5
Q ss_pred chHHHHHHHHHHHhC----C--C-c-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASLEE----A--K-H-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~~----~--~-~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+..+||+++|++++ . + + +|++|+|+++ + .++..++++||+|++++|+|.. +...++..|++++.+
T Consensus 91 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v 166 (413)
T PLN00175 91 FGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS----YEATLSMAGAKIKTV 166 (413)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchh----HHHHHHHcCCEEEEE
Confidence 468899999998763 2 2 3 6888998765 7 6777888999999999999984 677788899999998
Q ss_pred CCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC---C---CC
Q psy12791 129 DLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---S---LP 193 (393)
Q Consensus 129 ~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---~---~~ 193 (393)
+.+ |++++++.+.+++++|++++||||||.+++ +++|.++|+++ ++++|+||+|..+.+.. + +.
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~s~~~~~ 245 (413)
T PLN00175 167 TLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEGDHISMASLP 245 (413)
T ss_pred ECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCCcccChhhCC
Confidence 764 578899998888999999999999999997 66788899999 99999999999865431 1 11
Q ss_pred --CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHH
Q psy12791 194 --WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSI 267 (393)
Q Consensus 194 --~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 267 (393)
.++.++++||||.+ |++|+|+||++++ +++++.+.........+.+...+..+...++. +...++.+.++++
T Consensus 246 ~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~ 323 (413)
T PLN00175 246 GMYERTVTMNSLGKTF-SLTGWKIGWAIAP-PHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKD 323 (413)
T ss_pred CCcCcEEEEecchhhc-cCcchheeeeEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 24579999999999 6999999999997 88888887766544445555555555555432 3445566677778
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhc-CccccccccCCccccccCcc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESL-LIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~ 345 (393)
.+.+.|+.+ ++. +..|. .+.++|+.+.+ .......|.+.+ +..++.+.+|..|....
T Consensus 324 ~l~~~L~~~-g~~-~~~p~----------------g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~--- 382 (413)
T PLN00175 324 ILVEGLKEV-GFK-VYPSS----------------GTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNP--- 382 (413)
T ss_pred HHHHHHHHC-CCe-ecCCC----------------eeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCC---
Confidence 888888765 232 22222 13457887631 111223444443 33355555554432110
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+..+++|||+++. + ++.++...+.|.+
T Consensus 383 ---------------~~~~~~iRls~~~-~-~e~l~~~~~rL~~ 409 (413)
T PLN00175 383 ---------------EDGKNLVRFAFCK-D-EETLRAAVERMKT 409 (413)
T ss_pred ---------------CCCCCEEEEEEcC-C-HHHHHHHHHHHHH
Confidence 0125799999985 3 4433333344443
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=256.19 Aligned_cols=304 Identities=19% Similarity=0.189 Sum_probs=209.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~~~ 91 (393)
+.++ +.+.+++.+++.+.+.+.+.... ...|. +.++..+||+++|+++ | .+ +.|++|+|+++ + .++.
T Consensus 34 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (391)
T PRK08361 34 NVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYT--PNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFE 111 (391)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCC--CCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHH
Confidence 4566 67777776655554443322111 12232 4577889999999986 3 32 67888888775 6 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||.|++++|+|.+ +...++..|++++.++.+ |++++++.+.+++++|++++||||||.++|
T Consensus 112 ~l~~~g~~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~ 187 (391)
T PRK08361 112 SLLEEGDEVIIPDPAFVC----YVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEV 187 (391)
T ss_pred HhcCCCCEEEEcCCCCcc----cHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHH
Confidence 788999999999999986 556677889999988763 688999999888999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----C---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+++|.++|+++ ++++|+||+|..+.+.. + ....++++++|+||.+ |++|+|+||++++ +++++.+.....
T Consensus 188 ~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~-~~~~~~~~~~~~ 264 (391)
T PRK08361 188 AKAIADIAEDY-NIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAP-EQVIKDMIKLHA 264 (391)
T ss_pred HHHHHHHHHHc-CeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccC-HHHHHHHHHHHh
Confidence 78889999999 99999999998765421 1 1124679999999999 6999999999997 788887766554
Q ss_pred hcCCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
......+...+..+...++. +...++...++...+.+.|+.++++. +..|. .+.++|
T Consensus 265 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~----------------g~~~~~ 327 (391)
T PRK08361 265 YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIK-VFEPK----------------GAFYVF 327 (391)
T ss_pred hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCe-ecCCC----------------EEEEEE
Confidence 43334444444444333322 34445556667777888888765543 32232 133578
Q ss_pred EEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 309 FYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
+.+++..-....+.+.+ +..++.+..|..+.. ..++++||+++.
T Consensus 328 ~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~ 372 (391)
T PRK08361 328 ANIDETGMSSEDFAEWLLEKARVVVIPGTAFGK---------------------AGEGYIRISYAT 372 (391)
T ss_pred EECCCCCCCHHHHHHHHHHhCCEEEcCchhhCC---------------------CCCCEEEEEecC
Confidence 88852111223344433 334555655544310 115899999995
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=252.78 Aligned_cols=299 Identities=14% Similarity=0.151 Sum_probs=207.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC---CC-cEEEeccHHHH-HHHHHHhcC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE---AK-HGLCYSSGLGA-VTAVTHLLS 95 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~---~~-~~i~~~~G~~a-l~~~~~~~~ 95 (393)
.+.++ +.|+||+++++...+++.+.+. ...+++|++++..+||+++|++++ .+ ++|++|+|+++ +..+...+
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~-~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~- 96 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLN-SDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF- 96 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhh-hhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh-
Confidence 46677 8999999999888776654422 123555677789999999999998 44 79999999887 64333333
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCC---HHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK---IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d---~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|.|++++|+|. .|...++..|++++.++.++ ++.. .+ .++++++++|||||||.+++.+++.+++ ++
T Consensus 97 --d~v~v~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~~~~--~~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~ 166 (335)
T PRK14808 97 --DRSVFFPPTYS----CYRIFAKAVGAKFLEVPLTKDLRIPEV--NV-GEGDVVFIPNPNNPTGHVFEREEIERIL-KT 166 (335)
T ss_pred --CcEEECCCCHH----HHHHHHHHcCCeEEEecCCCcCCCChh--Hc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hc
Confidence 67999999998 58888999999999998852 1111 12 3579999999999999999999999998 47
Q ss_pred CCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
+++||+||+|.++...... ...+.++++||||.+ |++|+|+||++++ +++++.+......++ .+...+.++
T Consensus 167 -~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~-~~~~~~l~~~~~~~~--~~~~~q~a~ 241 (335)
T PRK14808 167 -GAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSS-EKFIDAYNRVRLPFN--VSYVSQMFA 241 (335)
T ss_pred -CCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeC-HHHHHHHHHhcCCCC--CCHHHHHHH
Confidence 8999999999976422111 134679999999999 6999999999997 788888876553332 334444444
Q ss_pred HhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 249 TRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 249 ~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
...++. .....+...++++.+.+.|+... +. +..+ .++++|+.+++ . ....+.+.+
T Consensus 242 ~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~-~~~~-----------------~g~f~~~~l~~-~-~~~~~~~~l 300 (335)
T PRK14808 242 KVALDHREIFEERTKFIVEERERMKSALREMG-YR-ITDS-----------------RGNFVFIFMEK-E-EKERLLEHL 300 (335)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC-CE-ECCC-----------------CCeEEEEeCCC-c-cHHHHHHHH
Confidence 443333 23344455566677778887652 22 2112 26789998852 2 224455555
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
...++.+.. + .+++|+|++... +-+.+.++|+.
T Consensus 301 ~~~Gi~V~~---~-------------------------~~~~Risi~~~~---~~~~~~~~l~~ 333 (335)
T PRK14808 301 RAKNIAVRS---F-------------------------REGVRITIGKRE---ENDMILKELEV 333 (335)
T ss_pred HHCCeEEEE---C-------------------------CCCeEEecCCHH---HHHHHHHHHHh
Confidence 544544431 0 257999998753 33566666653
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=253.34 Aligned_cols=211 Identities=14% Similarity=0.153 Sum_probs=159.5
Q ss_pred chHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+..+||+++|+++ |. ++ .+++|+|+++ + .++..++++||+|++++|+|+. +...+...|++++.+
T Consensus 73 ~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v 148 (394)
T PRK05942 73 EGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPA----HFRGPLIAGAQIYPI 148 (394)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcc----hHHHHHHcCCEEEEe
Confidence 46789999999987 43 24 5888888776 7 6667788999999999999985 455566789999988
Q ss_pred CCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC--
Q psy12791 129 DLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-- 192 (393)
Q Consensus 129 ~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-- 192 (393)
+.+ |++++++.+.+++++|++++||||||.+++ +++|.++|+++ ++++|+||+|..+.+.. ++
T Consensus 149 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~ 227 (394)
T PRK05942 149 ILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDGYQPTSLLE 227 (394)
T ss_pred ecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCCChhh
Confidence 763 678898888888999999999999999998 77888899999 99999999998765421 11
Q ss_pred -C--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHH
Q psy12791 193 -P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERG 265 (393)
Q Consensus 193 -~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 265 (393)
. ....++++||||.+ |++|+|+||++++ +++++.++..........+...+..+...++. +...++.+.++
T Consensus 228 ~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 305 (394)
T PRK05942 228 IPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGN-RHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTR 305 (394)
T ss_pred CCCccccEEEEecchhcc-CChhhheeeeecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 12458899999999 7999999999987 88999888766543334444444444444432 23334455566
Q ss_pred HHHHHHHHhhC
Q psy12791 266 SIEVAKFLESH 276 (393)
Q Consensus 266 ~~~l~~~l~~~ 276 (393)
...+.+.|+..
T Consensus 306 ~~~~~~~L~~~ 316 (394)
T PRK05942 306 RDFLIQGLGEL 316 (394)
T ss_pred HHHHHHHHHHC
Confidence 66677777654
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=254.31 Aligned_cols=312 Identities=15% Similarity=0.146 Sum_probs=201.7
Q ss_pred CCCCCCCC-CCCCCCC--cc-CCeeeeCCCC---------CCCCCccccCCCCchHHHHHHHHHHHhC--------CC-c
Q psy12791 19 SEPDQWRS-QCVIPPI--IL-STTFKQNTPG---------QPPQGFEYSRSNNPTRRNLERCIASLEE--------AK-H 76 (393)
Q Consensus 19 ~~~~~~~~-~~~~~p~--~~-~~~~~~~~~~---------~~~~~~~y~~~~~~~~~~lr~~la~~~~--------~~-~ 76 (393)
..|..+|. +.++||+ .+ .+.+.+.... .......|.. ..+..+||+++|++++ .+ +
T Consensus 43 ~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~G~~~LR~aiA~~l~~~~g~~v~v~pe 120 (496)
T PLN02376 43 RNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQD--YHGLKKFRQAIAHFMGKARGGKVTFDPE 120 (496)
T ss_pred cCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCC--CCCcHHHHHHHHHHHHHHhCCCCcCChh
Confidence 34455666 7788887 44 3333332211 1111222332 3567889999999875 33 7
Q ss_pred EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCCcEEEeeCCC-------CHHHHHhhc------
Q psy12791 77 GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIGLEVDFVDLR-------KIENLIKYI------ 140 (393)
Q Consensus 77 ~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~v~~~~~~-------d~~~l~~~l------ 140 (393)
.|++|+|+++ + .++.++++|||.|++++|+|+. +...++ ..|++++.++++ |++.++.++
T Consensus 121 ~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~----~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~ 196 (496)
T PLN02376 121 RVVMSGGATGANETIMFCLADPGDVFLIPSPYYAA----FDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQES 196 (496)
T ss_pred hEEEccchHHHHHHHHHHhCCCCCEEEECCCCccc----hHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhc
Confidence 8999999886 7 7778889999999999999995 555555 589999999873 467665442
Q ss_pred CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC--CCC---C-----------cCcEEEE
Q psy12791 141 KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK--SLP---W-----------GVDIVLY 201 (393)
Q Consensus 141 ~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~---~-----------~~di~~~ 201 (393)
..++|+|+++|||||||.+++ +++|+++|+++ +++||+||+|....+.. ... . ...++++
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 246899999999999999999 66678888899 99999999999865421 100 0 1235689
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC--H-HH----HHHHHHHHHHHHHHHHh
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT--L-PC----RLKEHERGSIEVAKFLE 274 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~----~~~~~~~~~~~l~~~l~ 274 (393)
||||.+ |+||+|+||++++++.+.+.++..... + ..+...+.++...++. + .. .++++.++.+.+.+.|+
T Consensus 276 S~SK~~-glpGlRvG~li~~~~~l~~~~~~~~~~-~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~ 352 (496)
T PLN02376 276 SLSKDM-GLPGFRVGIVYSFNDSVVSCARKMSSF-G-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIK 352 (496)
T ss_pred eccccC-CCCcceEEEEEECCHHHHHHHHHHhhc-C-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 799999999999767777766544432 2 2445555555444433 1 22 23444555666677776
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC------HHHHHHHHHhc-CccccccccCCccccccCcccc
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG------AEETRIFLESL-LIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
+. ++..+ .+. .|.++|+.++.. .+....+.+.+ +..++.+.+|..|..
T Consensus 353 ~~-gi~~~-~~~----------------aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~------- 407 (496)
T PLN02376 353 KA-DIACL-TSN----------------AGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRC------- 407 (496)
T ss_pred HC-CCccc-CCC----------------ceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCC-------
Confidence 53 22211 111 246789988421 11223444443 334777777765421
Q ss_pred cCCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 348 THKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
..++++||+++..+.+.+
T Consensus 408 --------------~~~g~~Ri~fa~~~~~~l 425 (496)
T PLN02376 408 --------------TEPGWFRICFANMDDDTL 425 (496)
T ss_pred --------------CCCCEEEEEeeCCCHHHH
Confidence 015899999996444433
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=252.23 Aligned_cols=308 Identities=16% Similarity=0.093 Sum_probs=203.7
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+++++.+++.....+.+.+.. ..+.+|++ .+..+||+++|+++ |. ++ +|++|+|+++ + .++
T Consensus 31 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~ 109 (405)
T PRK09148 31 DIIDLGMGNPDLPTPQHIVDKLCETAQD-PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMA 109 (405)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHcC-cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 4566 66777776666555544332111 12344544 46789999999987 43 24 7999999886 7 666
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhh---cCCCCcEEEEecCCCCcccccCH-
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKY---IKPNTKMVWIENPTNPLMTVFDV- 162 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~---l~~~~~~v~l~~p~nptG~~~~~- 162 (393)
..++++||.|++++|+|+. +...++..|++++.++.+ .++++++. ..++++++++++||||||.+++.
T Consensus 110 ~~l~~~gd~Vl~~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~ 185 (405)
T PRK09148 110 QAITAPGDVILCPNPSYPI----HAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLD 185 (405)
T ss_pred HHhcCCCCEEEEcCCCCcc----cHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHH
Confidence 7788999999999999985 556667889999998874 22333333 34578999999999999999994
Q ss_pred --HHHHHHHHhCCCcEEEEeCccCcccccC-C---C-C----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 163 --KAISAVVKQHPDILLVLDNTFLTAYYQK-S---L-P----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 163 --~~l~~l~~~~~~~~livDea~~~~~~~~-~---~-~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
++|.++|+++ +++||+||+|..+.+.. + + . .+..++++||||.+ |+||+|+||++++ +++++.+..
T Consensus 186 ~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~-~~~i~~l~~ 262 (405)
T PRK09148 186 FYKDVVAFAKKH-DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGN-ERLIAALTR 262 (405)
T ss_pred HHHHHHHHHHHc-CeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc-CCcchheeeeeCC-HHHHHHHHH
Confidence 6788889999 99999999999865421 1 1 1 12347799999999 6999999999987 889998887
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.........+...+..+...++. +...++.+.+++..+.+.|+.+. +. +..|. .|.++
T Consensus 263 ~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~-~~~p~----------------~g~f~ 324 (405)
T PRK09148 263 VKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG-WD-IPPPA----------------ASMFA 324 (405)
T ss_pred HHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc-cCCCC----------------eeEEE
Confidence 76654444444444444444432 33345555667777778887542 21 11122 24568
Q ss_pred EEEEcCCH--HHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH
Q psy12791 308 SFYVNGGA--EETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378 (393)
Q Consensus 308 ~~~~~~~~--~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~ 378 (393)
|+.+++.. .....+.+. ++..++.+.+|..+.. ..++++||+++ .+.+.
T Consensus 325 ~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---------------------~~~~~~Ri~~~-~~~~~ 376 (405)
T PRK09148 325 WAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGE---------------------HGDGYVRIALV-ENEQR 376 (405)
T ss_pred EEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCeEEEEec-CCHHH
Confidence 88885311 112334333 3344666666654310 01579999998 44433
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=251.45 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=199.2
Q ss_pred CccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHhC------------CC-cEEEeccHHHH-H-HHHHHhcCC
Q psy12791 33 IILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLEE------------AK-HGLCYSSGLGA-V-TAVTHLLSA 96 (393)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~~------------~~-~~i~~~~G~~a-l-~~~~~~~~~ 96 (393)
+.+++.+.+.+.+.+.. .....|+++ +..+||+++|++++ .+ ++|++|+|+++ + .++..++++
T Consensus 49 ~~p~~~~~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~ 127 (412)
T PTZ00433 49 LLTPAIQTKALVEAVDS-QECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDE 127 (412)
T ss_pred CCCCHHHHHHHHHHhhc-CCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCC
Confidence 34555555554332221 123345554 68899999999875 22 68999999876 7 667778899
Q ss_pred CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHH
Q psy12791 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAIS 166 (393)
Q Consensus 97 gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~ 166 (393)
||+|+++.|+|.. +...++..|++++.++.+ |++++++.+.+++++|+++|||||||.+++ +++|.
T Consensus 128 gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~ 203 (412)
T PTZ00433 128 GDNILVPAPGFPH----YETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDII 203 (412)
T ss_pred CCEEEEccCCccc----HHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHH
Confidence 9999999999984 677788899999988763 578898888888999999999999999998 66778
Q ss_pred HHHHhCCCcEEEEeCccCcccccC-C---C-CC---cCcEEEEcccccccCCCCceEEEEEecC-----hHHHHHHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQK-S---L-PW---GVDIVLYSLTKYMNGHSDVVMGATVTND-----DSLQARLKFLQ 233 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~-~---~-~~---~~di~~~S~sK~~~G~~G~r~G~~~~~~-----~~~~~~~~~~~ 233 (393)
++|+++ |++||+||+|.++.+.. + + .. ...++++||||.+ |.||+|+||+++.+ +++++.++...
T Consensus 204 ~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~ 281 (412)
T PTZ00433 204 RLCEEL-RLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLG 281 (412)
T ss_pred HHHHHc-CCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHh
Confidence 889999 99999999999865431 1 1 11 2358999999999 69999999999721 35666665544
Q ss_pred HhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 234 NSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
... ...+...+.++...+. .+...++...++++.+.+.|+.+.++. +..|. .+.++|
T Consensus 282 ~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~----------------gg~f~~ 343 (412)
T PTZ00433 282 MLV-CGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPR----------------GSMFLM 343 (412)
T ss_pred hcc-CCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC----------------eeEEEE
Confidence 322 2344444443333332 133344556667777888887654332 22222 245688
Q ss_pred EEEcCC----HHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 309 FYVNGG----AEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 309 ~~~~~~----~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
+.++.. ......+.+.+. ..++.+..|..+. .++++|++++..
T Consensus 344 ~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------~~~~iRis~~~~ 391 (412)
T PTZ00433 344 SRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFH-----------------------MPGFTRLTISRP 391 (412)
T ss_pred EEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccC-----------------------CCCeEEEEecCC
Confidence 888421 012344555543 3466666654431 047999999864
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=246.20 Aligned_cols=189 Identities=19% Similarity=0.204 Sum_probs=150.7
Q ss_pred ccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHH-HHHHHHh
Q psy12791 16 HIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHL 93 (393)
Q Consensus 16 ~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l~~~~~~ 93 (393)
|||.++.+++| +.|+||+.| +.+.+++.+... ...+|| ....+|+++|++++ ++|++|+|+++ +..+..+
T Consensus 2 ~~~~~~~~~i~l~~~~np~~p-~~~~~a~~~~~~---~~~~yp--~~~~l~~~ia~~~~--~~I~vt~G~~~al~~~~~~ 73 (311)
T PRK08354 2 HGGIREEGLIDFSASVNPYPP-EWLDEMFERAKE---ISGRYT--YYEWLEEEFSKLFG--EPIVITAGITEALYLIGIL 73 (311)
T ss_pred CCCCCccceeEecCCCCCCCC-HHHHHHHHHHHH---HhhcCC--ChHHHHHHHHHHHC--CCEEECCCHHHHHHHHHHh
Confidence 88999999999 999999964 555555543322 233444 45789999999998 46999999887 6444455
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHH
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVK 170 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~ 170 (393)
+.+||.|++++|+|+ .|...++..|++++.++. |++.+++.+. +++++++++||||||.+++ +++|.++|+
T Consensus 74 ~~~gd~vlv~~P~y~----~~~~~~~~~g~~~~~~~~-d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~ 147 (311)
T PRK08354 74 ALRDRKVIIPRHTYG----EYERVARFFAARIIKGPN-DPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVE 147 (311)
T ss_pred hCCCCeEEEeCCCcH----HHHHHHHHcCCEEeecCC-CHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhh
Confidence 568999999999998 478888999999988865 6888888776 5789999999999999998 556666778
Q ss_pred hCCCcEEEEeCccCcccccC-CCCCcCcEEEEcccccccCCCCceEEEEEe
Q psy12791 171 QHPDILLVLDNTFLTAYYQK-SLPWGVDIVLYSLTKYMNGHSDVVMGATVT 220 (393)
Q Consensus 171 ~~~~~~livDea~~~~~~~~-~~~~~~di~~~S~sK~~~G~~G~r~G~~~~ 220 (393)
++ ++++|+||+|.++.+.. .......++++||||.+ |+||+|+||+++
T Consensus 148 ~~-~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRiG~~v~ 196 (311)
T PRK08354 148 DR-NALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRVGYVKG 196 (311)
T ss_pred hc-CcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCccceeeeeee
Confidence 88 99999999998876532 22345679999999999 699999999998
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=259.13 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=171.2
Q ss_pred CCCC-CC-CCCCCcc--CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh------CCC-cEEEeccHHHH-H-HH
Q psy12791 23 QWRS-QC-VIPPIIL--STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE------EAK-HGLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~-~~-~~~p~~~--~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~------~~~-~~i~~~~G~~a-l-~~ 89 (393)
++++ +. +.+|++. ++...+++.+.+.....|+ +..+..+||+++|+++ +.+ ++|++|+|+++ + .+
T Consensus 147 ~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~--~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~ 224 (517)
T PRK13355 147 HILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYS--DSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLS 224 (517)
T ss_pred CeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCC--CCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHH
Confidence 4555 33 6666654 5555554443322223343 2346899999999998 444 78999999887 6 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
+.+++++||+|++++|+|+. |...++..|++++.++++ |++++++++.+++++|+++|||||||.+++
T Consensus 225 ~~~l~~~Gd~Vli~~P~y~~----y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~ 300 (517)
T PRK13355 225 MSALLDDGDEVLIPSPDYPL----WTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPR 300 (517)
T ss_pred HHHhCCCCCEEEEcCCCCcC----HHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCH
Confidence 77889999999999999984 677788899999888763 689999999889999999999999999999
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccC-C-CC---C-c--CcEEEEcccccccCCCCceEEEEEec-ChHH----H
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQK-S-LP---W-G--VDIVLYSLTKYMNGHSDVVMGATVTN-DDSL----Q 226 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~-~-~~---~-~--~di~~~S~sK~~~G~~G~r~G~~~~~-~~~~----~ 226 (393)
+++|.++|+++ +++||+||+|..+.++. + .. . . ..++++||||.+ |++|+|+||++++ ++++ +
T Consensus 301 ~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~~~~~~~ 378 (517)
T PRK13355 301 EVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKRIAKDYI 378 (517)
T ss_pred HHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchhhHHHHH
Confidence 77888899999 99999999999866532 1 11 1 1 135569999999 6999999999953 2433 3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCC---HHHH---HHHHHHHHHHHHHHHhhCCCc
Q psy12791 227 ARLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCR---LKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~l~~~~~~ 279 (393)
+.+..... ...+.+...+.++...+.. .... ..+..+++..+.+.|+.++++
T Consensus 379 ~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~ 436 (517)
T PRK13355 379 EGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGI 436 (517)
T ss_pred HHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33332222 2222333333333333321 2222 223445567777888766554
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=248.45 Aligned_cols=294 Identities=13% Similarity=0.096 Sum_probs=191.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~ 91 (393)
+.++ +.+.||+.+++...+.+.+... ....|+++ +..+||+++|+++ |. +++|++|+|+++ + .++.
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~---~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~ 101 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAH---LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQ 101 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhh---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHH
Confidence 5667 7888888776555555433222 23445444 5678999998765 53 378999999886 6 4445
Q ss_pred Hhc--CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLL--SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++ ++||.|+++.|+|+. |...++..|++++.++.+ +++.....+ +++++|+++|||||||.+++
T Consensus 102 ~~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~~~s~~~ 176 (374)
T PRK05839 102 FVLFDKQNPTIAYPNPFYQI----YEGAAIASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGRTLSLEE 176 (374)
T ss_pred HHhcCCCCCEEEECCCCchh----hHHHHHhcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCcccCHHH
Confidence 443 579999999999984 777788999999999874 111111222 46899999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCCC-------------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSL-------------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR 228 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~~-------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~ 228 (393)
+++|+++|+++ |++||+||+|.++....+. ..++.++++||||.| |.||+|+||++++ +++.+.
T Consensus 177 l~~i~~~~~~~-~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~-~~~~~~ 253 (374)
T PRK05839 177 LIEWVKLALKH-DFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGD-ASILKK 253 (374)
T ss_pred HHHHHHHHHHc-CCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecC-HHHHHH
Confidence 66677778889 9999999999985432111 114669999999999 7999999999997 888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc
Q psy12791 229 LKFLQNSMGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG 305 (393)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 305 (393)
+.......+...+...+..+...+ +.+...++...++++.+.+.|. + ..|. .+.
T Consensus 254 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~---~~p~----------------gg~ 310 (374)
T PRK05839 254 YKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREILG----I---TIPP----------------ATF 310 (374)
T ss_pred HHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcC----C---CCCC----------------eeE
Confidence 876655444444444333333222 2233334444445444444331 1 1221 256
Q ss_pred eEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 306 MLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
++|+.++++ ..+.+++ +..++.+.+|..+... +..++++|||++.
T Consensus 311 fi~~~~~~~----~~~~~~l~~~~gi~v~pg~~f~~~-------------------~~~~~~iRis~~~ 356 (374)
T PRK05839 311 YVWLPVDND----EEFTKKLYQNEGIKVLPGSFLGRN-------------------GIGKGYVRIALVY 356 (374)
T ss_pred EEEEeCCCh----HHHHHHHHHHCCEEEeCchhhCCC-------------------CCCCCeEEEEecC
Confidence 789998532 2344443 2245565555433110 1125899999975
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=250.63 Aligned_cols=319 Identities=16% Similarity=0.135 Sum_probs=216.8
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~ 91 (393)
+.+| +.+.+|+.++..+.+.+.+.... ..+..| +..+..+||+++|++++ . +++|++|+|+++ + .++.
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~ 108 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAAD-PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMV 108 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhC-cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHH
Confidence 4567 77888876666655544332111 122334 34678899999998864 2 278999999765 7 6666
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||+|++++|+|.. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 109 ~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~ 184 (386)
T PRK07550 109 TLAGAGDEVILPLPWYFN----HKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPEL 184 (386)
T ss_pred HhcCCCCEEEEcCCCCcc----hHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHH
Confidence 778999999999999985 566678899999998874 578899988888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC--C--C-C----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK--S--L-P----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~--~--~-~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ ++++|+|++|..+.... + . . ....+++.||||.+ |++|+|+||++++ +++++.+...
T Consensus 185 ~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~-~~~~~~~~~~ 261 (386)
T PRK07550 185 LHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVAS-PARIAEIEKF 261 (386)
T ss_pred HHHHHHHHHHc-CeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhc-cCcccceEeeecC-HHHHHHHHHH
Confidence 78899999999 99999999998754321 1 1 1 12468899999999 6999999999997 7888888776
Q ss_pred HHhcCCCCCHHHHHHHHhccCCHHH----HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKTLPC----RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
....+...+...+..+...++.+.. .++.+.++.+.+.+.|..++.+. + .+. .+.++|
T Consensus 262 ~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~----------------g~~~~~ 323 (386)
T PRK07550 262 MDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWE-L-LAS----------------GAYFAY 323 (386)
T ss_pred HhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-e-CCC----------------ceEEEE
Confidence 6655555556565555555554332 23444556667777887653321 1 111 245678
Q ss_pred EEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.++........+.+.+ +..++.+..|..+.. ..++++||+++..+ +++++...+.|
T Consensus 324 ~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~-~~~~~~~~~~l 381 (386)
T PRK07550 324 VRHPFPDRPSREVARRLAKEAGILCLPGTMFGP---------------------GQEGYLRLAFANAD-VAGIGELVERL 381 (386)
T ss_pred ecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCC---------------------CCCCEEEEEeecCC-HHHHHHHHHHH
Confidence 88742112234444443 334566655544310 11579999998765 44344444444
Q ss_pred HH
Q psy12791 388 RK 389 (393)
Q Consensus 388 ~~ 389 (393)
.+
T Consensus 382 ~~ 383 (386)
T PRK07550 382 RA 383 (386)
T ss_pred Hh
Confidence 43
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=250.07 Aligned_cols=305 Identities=16% Similarity=0.133 Sum_probs=205.8
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHh----CC--C-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLE----EA--K-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~----~~--~-~~i~~~~G~~a-l-~~~~ 91 (393)
+.++ +.+.+++.+++.+.+.+.+.+. ....|. +..+..+||+++|+++ |. + ++|++|+|+++ + .++.
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 108 (388)
T PRK07337 31 DIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYT--SALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACL 108 (388)
T ss_pred CEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHH
Confidence 4456 6667776666555554433221 122233 2346789999999986 32 2 67888888775 7 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||+|++++|+|+. +...++..|++++.++.+ |++++++.+.+++++|++++||||||.+++
T Consensus 109 ~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 184 (388)
T PRK07337 109 ALVERGDEVLMPDPSYPC----NRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDE 184 (388)
T ss_pred HhcCCCCEEEEeCCCchh----hHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHH
Confidence 788999999999999985 455567779899888763 678999999888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC-CC---CC-cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK-SL---PW-GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~-~~---~~-~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
+++|.++|+++ ++++|+||+|..+.+.. +. .. ...++++||||.+ |++|+|+||++++ +++++.+......+
T Consensus 185 ~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~-~~l~~~l~~~~~~~ 261 (388)
T PRK07337 185 LRRIVEAVRAR-GGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYF-NMTGWRLGWLVVP-EALVGTFEKLAQNL 261 (388)
T ss_pred HHHHHHHHHHC-CCEEEEeccccccccCCCCcChhhccCCEEEEEechhhc-CCchhheeeeecC-HHHHHHHHHHHHHh
Confidence 67788888999 99999999998755422 11 11 2347899999999 6999999999997 78888887776555
Q ss_pred CCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 237 GVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
+...+...+.++...+. .+.+.++.+.++++.+.+.|+.+ ++.....|. .|.++|+.+
T Consensus 262 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~----------------~g~f~~~~~ 324 (388)
T PRK07337 262 FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPD----------------GAFYVYADC 324 (388)
T ss_pred ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCC----------------eeEEEEEec
Confidence 54455545444433332 23334455566677778888764 222111222 245789988
Q ss_pred cCC----HHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 312 NGG----AEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 312 ~~~----~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
+.. ......|... ++..++.+.+|..+... ..++++|++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~--------------------~~~~~~Ri~~~~ 371 (388)
T PRK07337 325 RGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPH--------------------APRDYIRLSYAT 371 (388)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC--------------------CCCCEEEEEecC
Confidence 420 0122334433 34446666666543210 015899999996
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=248.65 Aligned_cols=240 Identities=18% Similarity=0.215 Sum_probs=178.8
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-HHHHHHhcCCCCe
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-VTAVTHLLSAGDH 99 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l~~~~~~~~~gd~ 99 (393)
+.+| +.|.||+.+++.+.+++.+.+.. ..+.+|++++..+||+++|++++.+ ++|++|+|+++ +..+...+ +||+
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~ 96 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKR-VPFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKH 96 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhc-CccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCe
Confidence 4567 88999998877776665443221 2356677778899999999999976 79999999887 54444444 7999
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCC
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPD 174 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 174 (393)
|+++.|+|+ .+...++..|++++.++.+ |++++++.+ ++++++++++||||||.+++.++|.++++ + +
T Consensus 97 V~v~~P~y~----~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~-~ 169 (337)
T PRK03967 97 IVITPPTFG----MYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-T-G 169 (337)
T ss_pred EEEeCCChH----HHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-c-C
Confidence 999999997 4666778899999998874 567777765 57899999999999999999999999995 7 8
Q ss_pred cEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 175 ILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 175 ~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
+++|+||+|.++...... .....++++||||.+ |++|+|+||++++ +++++.+......+ ..+...+.++..
T Consensus 170 ~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~iv~~-~~~i~~~~~~~~~~--~~~~~~q~~~~~ 245 (337)
T PRK03967 170 KPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAF-GLAGIRAGYAIAN-EEIIDALYRIKPPF--SLNILTMKIVRL 245 (337)
T ss_pred CEEEEECchhhhcccchHHHHhhCCCEEEEecchHhh-cchhhhheeeecC-HHHHHHHHhhcCCC--CCCHHHHHHHHH
Confidence 999999999875432111 124569999999999 6999999999997 88888887665433 334555555554
Q ss_pred ccCCH---HHHHHHHHHHHHHHHHHHhh
Q psy12791 251 GLKTL---PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 251 ~~~~~---~~~~~~~~~~~~~l~~~l~~ 275 (393)
.++.. .+.++...+++..+.+.|..
T Consensus 246 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 273 (337)
T PRK03967 246 ALDHYDLIEERIDYIIKERERVRRELGE 273 (337)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44432 22334444555566666653
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=247.25 Aligned_cols=272 Identities=18% Similarity=0.129 Sum_probs=186.3
Q ss_pred CCchHHHHHHHHHHHhC------CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLEE------AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~------~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
+..+..+||+++|++++ .+ ++|++|+|+++ + .++.+++++||.|++++|+|+. |...++..|++++.
T Consensus 72 ~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~----~~~~~~~~g~~~~~ 147 (409)
T PLN00143 72 PTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPD----VETYAIFHHLEIRH 147 (409)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcC----HHHHHHHcCCEEEE
Confidence 45678889999999873 23 68999999886 6 6677888999999999999985 66778889999998
Q ss_pred eCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CCC
Q psy12791 128 VDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SLP 193 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~~ 193 (393)
++.+ |++++++++.+++++++++|||||||.+++ +++|.++|+++ +++||+||+|..+.+.. ++.
T Consensus 148 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~ 226 (409)
T PLN00143 148 FDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKL-GILVIADEVYGHIVFGSKPFVPMG 226 (409)
T ss_pred EeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHc-CCeEEEEccccccccCCCCCcchh
Confidence 8752 689999888888999999999999999999 67788889999 99999999999865431 111
Q ss_pred ----CcCcEEEEcccccccCCCCceEEEEEecC-hHHHH------HHHHHHHhcCCCCCHHHHHHHHhccC-----CHHH
Q psy12791 194 ----WGVDIVLYSLTKYMNGHSDVVMGATVTND-DSLQA------RLKFLQNSMGVVPSPFDCWLVTRGLK-----TLPC 257 (393)
Q Consensus 194 ----~~~di~~~S~sK~~~G~~G~r~G~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 257 (393)
..+.++++||||.| |+||+|+||+++++ +.+.+ .+........ ..+...+.++...++ .+..
T Consensus 227 ~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~ 304 (409)
T PLN00143 227 LFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAP-FPPTFIQAAIPEILEKTTEDFFSK 304 (409)
T ss_pred hhcccCcEEEEccchhhc-CCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccC-CCCchHHHHHHHHHhcChHHHHHH
Confidence 13569999999999 69999999999843 33432 2322222212 223334444443332 2344
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC----CHHHHHHHH-HhcCcccccc
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG----GAEETRIFL-ESLLIFRCAE 332 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~l~~~~~~~ 332 (393)
.++...++.+.+.+.|++++.......|. .+.++|+.++. +......++ ..+...++.+
T Consensus 305 ~~~~~~~~~~~~~~~L~~~~~~~~~~~p~----------------gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v 368 (409)
T PLN00143 305 TINILRAALAFCYDKLKEIPCIMCPQKAE----------------GAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLII 368 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCC----------------eeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEE
Confidence 55556666677777777654321111121 24578998841 001122333 3334456666
Q ss_pred ccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 333 SLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 333 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
.+|..+. .++++||+++..
T Consensus 369 ~pg~~f~-----------------------~~~~iRi~~~~~ 387 (409)
T PLN00143 369 LPGVTVG-----------------------LKNWLRITFAVE 387 (409)
T ss_pred eCccccC-----------------------CCCeEEEEEcCC
Confidence 6664431 157999999953
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=248.29 Aligned_cols=238 Identities=20% Similarity=0.218 Sum_probs=172.1
Q ss_pred CccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEE
Q psy12791 33 IILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~ 102 (393)
+.+++.+.+++.+.+... ....| +..+..++|+++|++++ . +++|++|+|+++ + .++.+++++||+|++
T Consensus 47 ~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv 125 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSN-KFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILL 125 (409)
T ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEE
Confidence 445555555443322221 12233 34678899999999874 2 268888888776 7 667777899999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhC
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQH 172 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~ 172 (393)
++|+|+. +...++..|++++.++.+ |++++++.++++++++++++||||||.+++ +++|.++|+++
T Consensus 126 ~~p~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~ 201 (409)
T PLN02656 126 PRPGFPI----YELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKL 201 (409)
T ss_pred eCCCCCc----HHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999984 556667789999888762 678898888888999999999999999996 77888899999
Q ss_pred CCcEEEEeCccCcccccC----CC----CCcCcEEEEcccccccCCCCceEEEEEecC-------hHHHHHHHHHHHhcC
Q psy12791 173 PDILLVLDNTFLTAYYQK----SL----PWGVDIVLYSLTKYMNGHSDVVMGATVTND-------DSLQARLKFLQNSMG 237 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~----~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~-------~~~~~~~~~~~~~~~ 237 (393)
+++||+||+|..+.+.. ++ ...+.++++||||.| ++||+|+||+++++ +++++++.......+
T Consensus 202 -~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (409)
T PLN02656 202 -KILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILG 279 (409)
T ss_pred -CCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhc
Confidence 99999999999765432 11 123569999999999 69999999999852 578887776554432
Q ss_pred CCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 238 VVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
..+...+.++...++ .+...++...+++..+.+.|+.++.
T Consensus 280 -~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~ 324 (409)
T PLN02656 280 -GPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPC 324 (409)
T ss_pred -CCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 334445544444443 2444455666777778888876543
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=246.07 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=174.3
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~~ 90 (393)
+.+| +.+.+.+.+++.+.+.+.+.... .+..| +..+..+||+++|+++ |. ++ +|++|+|++. + .++
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~ 106 (387)
T PRK07683 29 NLISLTIGQPDFPTPSHVKEAAKRAITE--NYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAF 106 (387)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH
Confidence 4456 44444444444444443332211 12334 3467889999999987 32 24 7888888665 7 666
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
..++++||.|+++.|+|+. +...++..|++++.++.+ |.+++++.+.++++++++++||||||.+++
T Consensus 107 ~~l~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~ 182 (387)
T PRK07683 107 RTILEPGTEVILPAPIYPG----YEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEE 182 (387)
T ss_pred HHhCCCCCEEEEcCCCccc----hHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHH
Confidence 6778999999999999985 566677889999999874 567898888888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC---CC-C----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK---SL-P----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~---~~-~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ ++++|+||+|.++.+.. ++ . .++.++++||||.+ |+||+|+||++++ +++++.+....
T Consensus 183 ~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~-~~l~~~~~~~~ 259 (387)
T PRK07683 183 LQDIADVLKDK-NIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAP-SYLAKHILKVH 259 (387)
T ss_pred HHHHHHHHHHc-CeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccc-cCccceeEEEEcC-HHHHHHHHHHH
Confidence 77888999999 99999999999865432 11 1 23579999999999 6999999999997 78888887654
Q ss_pred HhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 234 NSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.......+...+..+...++ .++..++.+.+++..+.+.|...
T Consensus 260 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (387)
T PRK07683 260 QYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM 306 (387)
T ss_pred HhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43333344444444433332 23334555566777777777754
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-31 Score=250.02 Aligned_cols=248 Identities=16% Similarity=0.150 Sum_probs=168.3
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCC---ccccCC-CCchHHHHHHHHHHHh---CCC-cEEEeccHHHH-HHHHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQG---FEYSRS-NNPTRRNLERCIASLE---EAK-HGLCYSSGLGA-VTAVT 91 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~---~~y~~~-~~~~~~~lr~~la~~~---~~~-~~i~~~~G~~a-l~~~~ 91 (393)
.+.++ +.+++++.+++.+.+.+...+... ..+..| +.++..+||+++|+++ +.+ ++|++|+|+++ +..+.
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~ 112 (402)
T TIGR03542 33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ 112 (402)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH
Confidence 35667 788888877765555433221111 112233 4678899999999975 444 79999999887 55556
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCc-----------EEEeeCCCCHHHHHhhc--CCCCcEEEEecCCCCccc
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL-----------EVDFVDLRKIENLIKYI--KPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-----------~v~~~~~~d~~~l~~~l--~~~~~~v~l~~p~nptG~ 158 (393)
.++.+||.|++++|+|.. +...++..|+ +++.++.+..+.+...+ .+++++|++++||||||.
T Consensus 113 ~l~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~ 188 (402)
T TIGR03542 113 SLFGSDNTVAVQDPVYPA----YVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGT 188 (402)
T ss_pred HhcCCCCEEEEeCCCCcc----hHHHHHHcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCc
Confidence 677899999999999984 7777888898 88888764211121111 146899999999999999
Q ss_pred ccC---HHHHHHHHHhCCCcEEEEeCccCcccccC--CCC-------CcCcEEEEcccccccCCCCceEEEEEecChHHH
Q psy12791 159 VFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK--SLP-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226 (393)
Q Consensus 159 ~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~ 226 (393)
+++ +++|.++|+++ +++||+||+|.++.... +.. .+..++++||||.+ |+||+|+||++++ ++++
T Consensus 189 ~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~-~~l~ 265 (402)
T TIGR03542 189 VLTKEQLKELVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVP-KELT 265 (402)
T ss_pred cCCHHHHHHHHHHHHHc-CeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEec-HHHh
Confidence 999 77888899999 99999999999865432 111 12458899999999 7999999999997 6665
Q ss_pred --------HHHHHHHHhcCCCCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 227 --------ARLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 227 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+.+...........+...+.++...+.. ....++...++.+.+.+.|+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 328 (402)
T TIGR03542 266 YADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA 328 (402)
T ss_pred hcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221112122223444444433333321 2233444556667778888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=246.91 Aligned_cols=277 Identities=18% Similarity=0.181 Sum_probs=192.9
Q ss_pred cCCCC-chHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 54 SRSNN-PTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 54 ~~~~~-~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
.+|++ .+..+||+++|+++ |. ++ +|++|+|+++ + .++..++++||+|++++|+|+. +...++..|
T Consensus 57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~g 132 (387)
T PRK08912 57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDA----YLPLIRRAG 132 (387)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh----hHHHHHHcC
Confidence 34544 46789999999875 32 24 7888888775 7 6677788999999999999984 677788899
Q ss_pred cEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC---
Q psy12791 123 LEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK--- 190 (393)
Q Consensus 123 ~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~--- 190 (393)
++++.++.+ |++++++.+.++++++++++||||||.+++ +++|.++|+++ ++++|+||+|..+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~ 211 (387)
T PRK08912 133 GVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVFDGRRH 211 (387)
T ss_pred CEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhhhcccCCCCC
Confidence 999888763 678999988888999999999999999998 66788899999 99999999998754421
Q ss_pred -CC----C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC----CHHHHHH
Q psy12791 191 -SL----P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK----TLPCRLK 260 (393)
Q Consensus 191 -~~----~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 260 (393)
++ . .+++++++|+||.+ |++|+|+||++++ +++++.+...........++..+..+...+. .+...++
T Consensus 212 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 289 (387)
T PRK08912 212 IPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAA-PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRA 289 (387)
T ss_pred cChhhCCCccCceEEEeechhhc-cCcCceeEEEecC-HHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHH
Confidence 11 1 24679999999999 7999999999997 8888888766554333333333333322221 2333455
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-C-HHHHHHHHHhc-CccccccccCCc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-G-AEETRIFLESL-LIFRCAESLGGI 337 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l-~~~~~~~~~g~~ 337 (393)
.+.++++.+.+.|+.+ ++. +..+. .+.++|+.++. . ......+.+.+ +..++.+.+|..
T Consensus 290 ~~~~~~~~l~~~L~~~-g~~-~~~~~----------------g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 351 (387)
T PRK08912 290 DLARSRDRLAAGLRRI-GFP-VLPSQ----------------GTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSA 351 (387)
T ss_pred HHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchh
Confidence 5667777788888765 222 21111 13467888742 1 12344455543 444666666544
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
+.... ...+++||+++..
T Consensus 352 f~~~~-------------------~~~~~iRl~~~~~ 369 (387)
T PRK08912 352 FYEED-------------------PVTSVVRFCFAKR 369 (387)
T ss_pred hCCCC-------------------CCCCEEEEEEeCC
Confidence 32110 1258999999963
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=247.11 Aligned_cols=297 Identities=15% Similarity=0.177 Sum_probs=193.0
Q ss_pred CCCCCc--cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh------CCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 29 VIPPII--LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE------EAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 29 ~~~p~~--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~------~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
+.+|+. +++.+.+++.+.......|+. ..+..+||+++|+++ +.+ ++|++++|+++ + .++.+++++|
T Consensus 42 ~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~g 119 (404)
T PRK09265 42 NPAPFGFEAPDEILRDVIRNLPTAQGYSD--SKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNG 119 (404)
T ss_pred CCCcCCCCCCHHHHHHHHHHhhcCCCCCC--CCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCC
Confidence 444433 444444444332222233432 245689999999997 444 68999999887 6 6667788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHH
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISA 167 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~ 167 (393)
|+|++++|+|.. +...++..|.+++.++.+ |++++++.+.+++++|++++||||||.+++ +++|.+
T Consensus 120 d~Vlv~~p~y~~----~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~ 195 (404)
T PRK09265 120 DEVLVPAPDYPL----WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVE 195 (404)
T ss_pred CEEEEeCCCCcC----hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHH
Confidence 999999999985 666677788888877542 578899888888999999999999999999 888899
Q ss_pred HHHhCCCcEEEEeCccCcccccC----CC---CC-cCcEEEEcccccccCCCCceEEEEEec-ChH----HHHHHHHHHH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQK----SL---PW-GVDIVLYSLTKYMNGHSDVVMGATVTN-DDS----LQARLKFLQN 234 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~----~~---~~-~~di~~~S~sK~~~G~~G~r~G~~~~~-~~~----~~~~~~~~~~ 234 (393)
+|+++ |+++|+||+|.++.+.. ++ .. ...++++||||.+ |+||+|+||++++ ++. +++.+.....
T Consensus 196 ~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~ 273 (404)
T PRK09265 196 IARQH-NLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS 273 (404)
T ss_pred HHHHC-CCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhc-cCcccceEEEEEeCchHHHHHHHHHHHHHhc
Confidence 99999 99999999998765421 11 11 1347899999999 6999999999963 343 3333322211
Q ss_pred hcCCCCCHHHHHHHHhccCC---HHHH---HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT---LPCR---LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
.....+...+.++...+.. .... .++..+++..+.+.|+.++++. +..|. .+.++|
T Consensus 274 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~-~~~p~----------------~g~~l~ 335 (404)
T PRK09265 274 -MRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVS-CVKPK----------------GALYAF 335 (404)
T ss_pred -cccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC----------------cceEEE
Confidence 2223333444444443332 2211 2344566667778887665532 22222 245688
Q ss_pred EEEcCCH----HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 309 FYVNGGA----EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 309 ~~~~~~~----~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
+.+++.. ...+.+.+.+...++.+..|..+.. ..++++|++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~---------------------~~~~~~Ri~~~ 382 (404)
T PRK09265 336 PKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW---------------------PEPDHFRIVTL 382 (404)
T ss_pred EEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC---------------------CCCCeEEEEeC
Confidence 8884211 2333444555555666666544311 11579999996
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=246.78 Aligned_cols=246 Identities=17% Similarity=0.202 Sum_probs=178.3
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC----C----CcEEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE----A----KHGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~----~----~~~i~~~~G~~a-l-~~ 89 (393)
.+.++ +.+.+|+.+++.+.+...+.... .+..| +..+..+||+++|++++ . +++|++++|+++ + .+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~ 107 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDA--NQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSAS 107 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 35677 78888887766555544332211 12234 34567899999999864 2 257888888765 7 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCC---CCcEEEEecCCCCccccc
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKP---NTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~---~~~~v~l~~p~nptG~~~ 160 (393)
+..++++||.|++++|+|.. +...++..|.+++.++.+ |++.+++++.. ++++|++++||||||.++
T Consensus 108 ~~~~~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~ 183 (391)
T PRK07309 108 LTAILEPGDKVLLPAPAYPG----YEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTY 183 (391)
T ss_pred HHHhcCCCCEEEEeCCCCcc----hHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCc
Confidence 77788999999999999995 566778889999988763 67888888753 589999999999999999
Q ss_pred C---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 161 D---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 161 ~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+ +++|.++|+++ ++++|+|++|.++.+.. ++ ...+.++++||||.+ |++|+|+||++++ +++++.+.
T Consensus 184 s~~~~~~l~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~-~~~~~~~~ 260 (391)
T PRK07309 184 SREQIKALADVLKKY-DIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAP-AEFTAQLI 260 (391)
T ss_pred CHHHHHHHHHHHHHc-CcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhc-cCccceeEEEEeC-HHHHHHHH
Confidence 8 78888899999 99999999999866521 11 124569999999999 7999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
..........+...+..+...++. ....++.+.+++..+.+.|+.+
T Consensus 261 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 261 KSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred HHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 655433334444444444444433 2223444556666777777754
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-30 Score=245.79 Aligned_cols=295 Identities=17% Similarity=0.185 Sum_probs=198.3
Q ss_pred CCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC-----CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEE
Q psy12791 32 PIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE-----AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~-----~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~ 102 (393)
++.+++.+.+.+.+.+... .+..| +..+..+||+++|++++ .+ ++|++++|+++ + .++..++++||+|++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i 124 (401)
T TIGR01264 46 NLPTDPEVMQAMKDSLDSG-KYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILV 124 (401)
T ss_pred CCCCCHHHHHHHHHHHhcc-CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEE
Confidence 4666666665543322221 22334 45778899999999987 33 67888888775 7 667778899999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhC
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQH 172 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~ 172 (393)
++|+|. .+...++..|++++.++.+ |++.+++.+.+++++|++++||||||.+++ +++|.++|+++
T Consensus 125 ~~P~y~----~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~ 200 (401)
T TIGR01264 125 PRPGFP----LYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQ 200 (401)
T ss_pred eCCCCh----hHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 999998 4677788899999888652 688898888878999999999999999997 77888888999
Q ss_pred CCcEEEEeCccCcccccC----CC-CC---cCcEEEEcccccccCCCCceEEEEEecCh-----HHHHHHHHHHHhcCCC
Q psy12791 173 PDILLVLDNTFLTAYYQK----SL-PW---GVDIVLYSLTKYMNGHSDVVMGATVTNDD-----SLQARLKFLQNSMGVV 239 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~----~~-~~---~~di~~~S~sK~~~G~~G~r~G~~~~~~~-----~~~~~~~~~~~~~~~~ 239 (393)
++++|+||+|.++.+.. ++ .. ...++++||||.| |+||+|+||++++++ ++++.++..... ...
T Consensus 201 -~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~-~~~ 277 (401)
T TIGR01264 201 -CLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR-ILG 277 (401)
T ss_pred -CCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHHHHHHHHHhhc-cCC
Confidence 99999999999865432 11 11 1358999999999 699999999998742 344444333221 122
Q ss_pred CCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-
Q psy12791 240 PSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG- 313 (393)
Q Consensus 240 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (393)
.+...+.++...++ .+...++.+.++++.+.+.|+.++++. +..|. .|.++|+.++.
T Consensus 278 ~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~----------------~g~f~~~~~~~~ 340 (401)
T TIGR01264 278 PCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR-PVMPS----------------GAMYMMVGIEME 340 (401)
T ss_pred CCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCC----------------eeeEEEEEeccc
Confidence 23333333333332 234445566677778888888765432 22232 25678888731
Q ss_pred ---CHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 314 ---GAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 314 ---~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
+......+.+.+ +..++.+..|+.+. .++++|+|++..
T Consensus 341 ~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~-----------------------~~~~iRis~~~~ 382 (401)
T TIGR01264 341 HFPEFKNDVEFTERLVAEQSVFCLPGSCFE-----------------------YPGFFRVVLTVP 382 (401)
T ss_pred ccCCCCCHHHHHHHHHHhCCEEEeCchhcC-----------------------CCCeEEEEEcCC
Confidence 001123344443 34456665554431 147999999864
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=242.70 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=218.4
Q ss_pred CchHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 58 NPTRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...+++.|+++|+++|++ +.|++|.|+++ + .....+ +++||+|++++.+|+++...|...++..|++++++|.
T Consensus 65 t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~ 144 (405)
T COG0520 65 TDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144 (405)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEec
Confidence 346788999999999987 68999999886 7 444555 6899999999999999999999999999999999997
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLT 204 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~s 204 (393)
+ +.++++..++++||+|.+++.+|.||.+.|+++|.++||++ |+++++|.+|+.++....+. .++|+++.|.|
T Consensus 145 ~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~-ga~v~VDaaq~~~h~~idv~~l~~Df~afsgH 223 (405)
T COG0520 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEH-GALVLVDAAQAAGHLPIDVQELGCDFLAFSGH 223 (405)
T ss_pred CCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHc-CCEEEEECccccCccCCCchhcCCCEEEEccc
Confidence 5 68999999999999999999999999999999999999999 99999999999887654443 68999999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHh----------------------cCCCCCHHHHHHHHhccCC-----HHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNS----------------------MGVVPSPFDCWLVTRGLKT-----LPC 257 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~-----~~~ 257 (393)
||+.||.| +|.++++ +++.+.+...... -.+.+.......+..+++. +..
T Consensus 224 Kwl~gP~G--iGvLy~r-~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~ 300 (405)
T COG0520 224 KWLLGPTG--IGVLYVR-KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEA 300 (405)
T ss_pred ccccCCCc--eEEEEEc-hHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHH
Confidence 98878889 9999998 7877776321110 0111111111111222221 122
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCC
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
..+...+...++.+.|+++|++.....+. ....++++|.+++ ...+...+++. .++++..|.
T Consensus 301 i~~~e~~L~~~~~~~L~~~~~v~i~g~~~--------------~~r~~~vsF~v~~~~~~dv~~~L~~---~gI~vr~g~ 363 (405)
T COG0520 301 IEAHERELTEYLLEGLSELPGVEIYGPPD--------------ADRGGIVSFNVKGIHPHDVATLLDE---KGIAVRAGH 363 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCc--------------ccCceEEEEEeCCCCHHHHHHHHHh---CCeEEEecc
Confidence 22333455667778888888866332221 1236899999965 34555555554 346666665
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.|... . +. ..++ .+.+|+|++++||+++|++|.++|+++.
T Consensus 364 ~ca~p---~-~~----------~~~~-~~~iR~S~~~YNt~edid~l~~aL~~~~ 403 (405)
T COG0520 364 HCAQP---L-HR----------LLGV-DATIRASLHLYNTEEDVDRLLEALKKAL 403 (405)
T ss_pred ccccH---H-HH----------hcCC-CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 44221 1 11 1122 4559999999999999999999999865
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=246.32 Aligned_cols=317 Identities=19% Similarity=0.181 Sum_probs=214.7
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHH-HH-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLG-AV-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~-al-~~~~ 91 (393)
+.++ +.+.+++.+++.+.+...+.+.. ...|. +..+..+||+++|+++ | .+ +++++++|++ ++ .++.
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~ 109 (393)
T PRK05764 32 DVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYT--PAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFM 109 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcC--CCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHH
Confidence 4556 56666665555554443322211 12233 2456789999999987 3 22 6788888866 57 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||.|++++|+|.. +..+++..|++++.++.+ |++++++.+.+++++|++++|+||||.+++
T Consensus 110 ~~~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~ 185 (393)
T PRK05764 110 ALLDPGDEVIIPAPYWVS----YPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEE 185 (393)
T ss_pred HhcCCCCEEEecCCCCcc----hHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHH
Confidence 788999999999999985 667778889999998874 578999998888999999999999999997
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----C---C---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---L---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|.++|+++ ++++++|++|..+.+.. + + ..+++++++||||.+ |++|+|+||++++ +++++.++.
T Consensus 186 ~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~-~~~~~~~~~ 262 (393)
T PRK05764 186 LEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGP-KELIKAMSK 262 (393)
T ss_pred HHHHHHHHHHC-CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecC-HHHHHHHHH
Confidence 77888999999 99999999998765421 1 1 124689999999999 6999999999987 889888877
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.........++..+..+...++. +...++...++...+.+.|++++++. +..|. .+.++
T Consensus 263 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------g~~~~ 325 (393)
T PRK05764 263 LQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLE-CPKPE----------------GAFYV 325 (393)
T ss_pred HHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccCCC----------------cceEE
Confidence 66655555566665555555431 23344455566677788887765543 21121 13457
Q ss_pred EEEEcCCHHH----HHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 308 SFYVNGGAEE----TRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 308 ~~~~~~~~~~----~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
|+.+++.... ...+.+.+ +..++.+..|..+. . ++++|+|++. ++++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~----------------------~-~~~vRis~~~--~~~~~~~ 380 (393)
T PRK05764 326 FPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG----------------------A-PGYVRLSYAT--SLEDLEE 380 (393)
T ss_pred EEecccccccccCCHHHHHHHHHHhCCEEEccccccC----------------------C-CCEEEEEecC--CHHHHHH
Confidence 7777421111 13343332 33455555554321 0 4899999985 4555555
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
..+.|.++
T Consensus 381 ~i~~l~~~ 388 (393)
T PRK05764 381 GLERIERF 388 (393)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=245.90 Aligned_cols=216 Identities=18% Similarity=0.214 Sum_probs=159.8
Q ss_pred CchHHHHHHHHHHHhCC------C-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 58 NPTRRNLERCIASLEEA------K-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~------~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
..+..++|+++|++++. + +.|++|+|+++ + .++..++++||+|++++|+|+. |...+...|++++.+
T Consensus 93 ~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~----y~~~~~~~g~~~~~~ 168 (430)
T PLN00145 93 CVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPL----YEARAVFSGLEVRHF 168 (430)
T ss_pred CccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEe
Confidence 35788999999999752 2 67888888775 7 6677788999999999999985 666677889999888
Q ss_pred CCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC--
Q psy12791 129 DLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-- 192 (393)
Q Consensus 129 ~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-- 192 (393)
++. |++++++.+++++++++++|||||||.+++ +++|.++|+++ |++||+||+|..+.+.. ++
T Consensus 169 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~~~~~~~~ 247 (430)
T PLN00145 169 DLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKL-GILVIADEVYDHLTFGSKPFVPMGV 247 (430)
T ss_pred eCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccchhhccCCCCccchhh
Confidence 752 789999988889999999999999999999 77788889999 99999999999865432 11
Q ss_pred -C-CcCcEEEEcccccccCCCCceEEEEEecC-hHHHH------HHHHHHHhcCCCCCHHHHHHHHhccCC-----HHHH
Q psy12791 193 -P-WGVDIVLYSLTKYMNGHSDVVMGATVTND-DSLQA------RLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPCR 258 (393)
Q Consensus 193 -~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 258 (393)
. ....++++||||.| ++||+|+||+++++ +.+++ .++.... .....+...+.++...++. +...
T Consensus 248 ~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~ 325 (430)
T PLN00145 248 FGEVAPVLTLGSISKRW-VVPGWRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFFTKT 325 (430)
T ss_pred hcccCcEEEEecccccc-CCCCeeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 1 23569999999999 69999999999742 33433 2322222 2223334444444333332 3445
Q ss_pred HHHHHHHHHHHHHHHhhCCCcc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
++.+.++++.+.+.|+.++++.
T Consensus 326 ~~~~~~~~~~~~~~L~~~~g~~ 347 (430)
T PLN00145 326 LGLLKETADICYEKIKEIKCIT 347 (430)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC
Confidence 5666677777888887766543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=247.93 Aligned_cols=246 Identities=15% Similarity=0.108 Sum_probs=168.1
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCC------CCccccCCCCchHHHHHHHHHHHh------CCC-cEEEeccHHHH-
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPP------QGFEYSRSNNPTRRNLERCIASLE------EAK-HGLCYSSGLGA- 86 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~------~~~~y~~~~~~~~~~lr~~la~~~------~~~-~~i~~~~G~~a- 86 (393)
.+.++ +.+++|+.+++.+.+.+.+.+. ....|+ +.++..+||+++|+++ +.+ ++|++|+|+++
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~a 111 (409)
T PRK07590 34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYG--PEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCD 111 (409)
T ss_pred CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCC--CCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHH
Confidence 35667 8888888777655443322211 122343 5678889999999985 344 79999999887
Q ss_pred HHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcE-----------EEeeCCCCHHHHHhhc-CCCCcEEEEecCCC
Q psy12791 87 VTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE-----------VDFVDLRKIENLIKYI-KPNTKMVWIENPTN 154 (393)
Q Consensus 87 l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~-----------v~~~~~~d~~~l~~~l-~~~~~~v~l~~p~n 154 (393)
+.++..++.+||+|++++|+|+. +...++..|.+ ++.++.+.-+.+...+ .+++++|++++|||
T Consensus 112 l~~l~~~~~~gd~V~v~~P~Y~~----~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~N 187 (409)
T PRK07590 112 TGNILDIFGPDNTIAVTDPVYPV----YVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNN 187 (409)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcc----hHHHHHHcCCcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCC
Confidence 65556677899999999999985 66777888876 8888774211222222 25789999999999
Q ss_pred CcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC----CC-C----cCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 155 PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS----LP-W----GVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 155 ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~----~~-~----~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
|||.+++ +++|.++|+++ +++||+||+|..+.+... +. . +..++++||||.+ |+||+|+||++++
T Consensus 188 PTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~- 264 (409)
T PRK07590 188 PTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVP- 264 (409)
T ss_pred CcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcC-
Confidence 9999998 66777888999 999999999998654321 11 1 2458899999999 7999999999997
Q ss_pred hHHHHHH------------HHHHHhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 223 DSLQARL------------KFLQNSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 223 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+++++.+ ...........+...+.++...+. .+...++...++++.+.+.|+.+
T Consensus 265 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 335 (409)
T PRK07590 265 KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA 335 (409)
T ss_pred HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777621 111111112334444444433332 23334555566777788888765
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=244.33 Aligned_cols=287 Identities=20% Similarity=0.189 Sum_probs=211.8
Q ss_pred CchHHHHHHHHHHHhC----C---CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 58 NPTRRNLERCIASLEE----A---KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~----~---~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
..+..+||+.+++++. . +++|++|+|++. + .++..+++|||.|++.+|+|.+ ..++++..|++++.+
T Consensus 131 ~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~----~~~~~~~~g~~~~~v 206 (459)
T COG1167 131 TAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPG----ALQALEALGARVIPV 206 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHH----HHHHHHHcCCcEEec
Confidence 3788899999999864 2 268999999886 7 6677788999999999999995 667788999999999
Q ss_pred CCC----CHHHHHhhcCC-CCcEEEE-ecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-CC------
Q psy12791 129 DLR----KIENLIKYIKP-NTKMVWI-ENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-SL------ 192 (393)
Q Consensus 129 ~~~----d~~~l~~~l~~-~~~~v~l-~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~~------ 192 (393)
|.+ |++.+++.+.. ++|++|+ .+.+||||.+++ +++|.++|++| +++||+|+.|+.+.+.. +.
T Consensus 207 p~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~~~p~~~l~~l 285 (459)
T COG1167 207 PVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKY-DVLIIEDDYYGELRYDGPPPPPLKAL 285 (459)
T ss_pred CCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHc-CCeEEeeCcchhhhcCCCCCCChHhh
Confidence 997 79999999875 5899888 588999999998 77999999999 99999999999977652 22
Q ss_pred C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc------CCHHHHHHHHHHH
Q psy12791 193 P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL------KTLPCRLKEHERG 265 (393)
Q Consensus 193 ~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 265 (393)
+ .+..++++||||.+ .||+|+||++++ +++++.+...........+...+..+..-+ +.+...+..+.++
T Consensus 286 d~~~rViy~gSFSK~l--~PglRlG~vv~p-~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~r 362 (459)
T COG1167 286 DAPGRVIYLGSFSKTL--APGLRLGYVVAP-PELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARR 362 (459)
T ss_pred CCCCCEEEEeeehhhc--ccccceeeeeCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 25779999999999 599999999998 899998887777666666666544333222 1233344555666
Q ss_pred HHHHHHHHhhCC-CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc-CCccccccC
Q psy12791 266 SIEVAKFLESHP-CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL-GGIESLADL 343 (393)
Q Consensus 266 ~~~l~~~l~~~~-~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~~s~~~~ 343 (393)
...+.+.|.++. ....+..|. .|.++|+++++ ..+...+.......++.+.+ |..+.....
T Consensus 363 r~~l~~~L~~~~~~~~~~~~p~----------------gG~flwl~l~~-~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~ 425 (459)
T COG1167 363 RDALLEALAEYLPELATWTRPE----------------GGLFLWLELPE-GIDARELLAAALEKGVVVTPLGSAFSADGD 425 (459)
T ss_pred HHHHHHHHHHhCCCCeeeecCC----------------ceEEEEEEcCC-CCCHHHHHHHHHHCCCEEEcCCccccCCCC
Confidence 777788887653 244444444 24568999963 33344455554444555555 544432211
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
..+++||+++..+.+++.+.+....+
T Consensus 426 -------------------~~~~~Rl~~s~~~~e~i~~gi~~l~~ 451 (459)
T COG1167 426 -------------------PRNGLRLSFSSPSEEEIEEGIKRLAA 451 (459)
T ss_pred -------------------CCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 25799999999997777666554433
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=236.28 Aligned_cols=317 Identities=21% Similarity=0.229 Sum_probs=232.9
Q ss_pred CCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHH--hc----CCCCeEEEcCCCccchHHHHHH
Q psy12791 46 QPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTH--LL----SAGDHIISGDDVYGGTYRYFAQ 116 (393)
Q Consensus 46 ~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~--~~----~~gd~vl~~~~~y~~~~~~~~~ 116 (393)
++...|.|++-.....++.|+.+|+++|++ +.|++|||.++ . .++.. .. +.|.+|+++..+|+++.+....
T Consensus 31 NPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~ 110 (386)
T COG1104 31 NPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRY 110 (386)
T ss_pred CccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHH
Confidence 334567777766677889999999999987 68999999776 5 56654 21 2578999999999998777766
Q ss_pred hcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC
Q psy12791 117 VAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS 191 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~ 191 (393)
. +..|.+|.+++++ |+++|+++++++|.+|.+.+.||.||+++|+++|.++|+++ ++++++|.+++.+.....
T Consensus 111 L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~-~i~fHvDAvQa~Gkipi~ 188 (386)
T COG1104 111 L-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKER-GILFHVDAVQAVGKIPID 188 (386)
T ss_pred H-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHc-CCeEEEehhhhcCceecc
Confidence 5 7789999999997 89999999999999999999999999999999999999999 999999999997765433
Q ss_pred CC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHH-HHHHHH----hcCCCCCHHHHHHH---HhccCCHHHHHHHH
Q psy12791 192 LP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR-LKFLQN----SMGVVPSPFDCWLV---TRGLKTLPCRLKEH 262 (393)
Q Consensus 192 ~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 262 (393)
+. .+.|+...|.||.+ ||.| +|+++.++..-.+. +..-.+ ..|....+....+. ....+.+.....+.
T Consensus 189 ~~~~~vD~ls~SaHK~~-GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~ 265 (386)
T COG1104 189 LEELGVDLLSFSAHKFG-GPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARL 265 (386)
T ss_pred ccccCcceEEeehhhcc-CCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 37899999999999 7999 99999863222221 110000 01222222222221 12223444455555
Q ss_pred HHHHHHHHHHHhhC-CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccc
Q psy12791 263 ERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLA 341 (393)
Q Consensus 263 ~~~~~~l~~~l~~~-~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~ 341 (393)
...+.++.+.|... |.+. ..+-. ....++.+.|.+++ -+.+.++-.|+..++++|.|+.|+..
T Consensus 266 ~~lr~~l~~~l~~~~p~~~---~~g~~-----------~~rlP~~~~~~f~g--v~gE~ll~~L~~~gI~vStGSACsS~ 329 (386)
T COG1104 266 RKLRDRLEDGLLEIIPDVY---LNGDD-----------EPRLPNILNFSFPG--VEGESLLLALDLAGIAVSTGSACSSG 329 (386)
T ss_pred HHHHHHHHHHHHhcCCcEE---EcCCc-----------ccCCCCeEEEEeCC--CcHHHHHHhccccCeEEeccccccCC
Confidence 56666777777654 5432 11100 02246789999965 67788888899889999999987655
Q ss_pred cCcccccCCCCChhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 342 DLPAEMTHKSIPKETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
... +.+...++|.+ .+.||||+|..+++++++.+.++++++.
T Consensus 330 ~~~--------pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i 375 (386)
T COG1104 330 SLE--------PSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEII 375 (386)
T ss_pred CCC--------ccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 332 44566666764 5899999999999999999999998765
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=246.25 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=161.2
Q ss_pred CchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhc-CCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLL-SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..+||+++|++++ . +++|++|+|+++ + .++..++ ++||.|+++.|+|+. |...++..|.+++.
T Consensus 114 ~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~----y~~~~~~~g~~~v~ 189 (481)
T PTZ00377 114 SAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPL----YSAAITLLGGKQVP 189 (481)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchh----HHHHHHHcCCEEEE
Confidence 3478899999999864 2 278999999886 7 6666777 799999999999984 77778889999998
Q ss_pred eCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-
Q psy12791 128 VDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK- 190 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~- 190 (393)
++++ |++++++.+.+ +++++++++||||||.+++ +++|+++|+++ +++||+||+|..+.+..
T Consensus 190 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~-~~~iI~De~Y~~l~~~~~ 268 (481)
T PTZ00377 190 YYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQENIYDGE 268 (481)
T ss_pred EEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhHhhccCCC
Confidence 8764 57888888764 7899999999999999999 78889999999 99999999999865421
Q ss_pred -CC--------CC-------cCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Q psy12791 191 -SL--------PW-------GVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL 252 (393)
Q Consensus 191 -~~--------~~-------~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
+. .. ...++++||||.+.|++|+|+||+++ .++++++.+....... .+.+...+.++...+
T Consensus 269 ~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~-~~~~~~~Q~a~~~~l 347 (481)
T PTZ00377 269 KPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASIN-LCSNVVGQLMTGLMC 347 (481)
T ss_pred CCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhee-cCCChHHHHHHHHHh
Confidence 11 01 13588999999744799999999997 2388888887765432 234444444444433
Q ss_pred CC----------HHHHHH----HHHHHHHHHHHHHhhCCCcc
Q psy12791 253 KT----------LPCRLK----EHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 253 ~~----------~~~~~~----~~~~~~~~l~~~l~~~~~~~ 280 (393)
+. +...++ .+.+++..+.+.|+.++++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~ 389 (481)
T PTZ00377 348 NPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS 389 (481)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 21 222222 23566677788888766544
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=242.85 Aligned_cols=248 Identities=20% Similarity=0.284 Sum_probs=176.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC-----CC-cEEEeccHHHH-H-HHHHHh
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE-----AK-HGLCYSSGLGA-V-TAVTHL 93 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~-----~~-~~i~~~~G~~a-l-~~~~~~ 93 (393)
+.++ +.+.+|+.+++.+.+.+.+.......|. +..+..++|+++|++++ .+ +.|++|+|+++ + .++..+
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 108 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYS--HSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI 108 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcC--CCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh
Confidence 3555 6667777666555554433212222233 23578899999999873 33 67888888775 7 666677
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC---H
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---V 162 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~ 162 (393)
+++||+|++++|+|.. +...++..|++++.++.+ +++++++.+++++++|++++|+||||.+++ +
T Consensus 109 ~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~ 184 (397)
T PRK07568 109 CDPGDEILVPEPFYAN----YNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEEL 184 (397)
T ss_pred cCCCCEEEEecCCCcc----HHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHH
Confidence 8999999999999984 555567889999888763 358888888888999999999999999997 7
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccC----C-CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQK----S-LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~----~-~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
++|.++|+++ ++++|+|++|..+.+.. + .. ....++++||||.+ |++|+|+||++++++++++.+....
T Consensus 185 ~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~~~~~~~ 262 (397)
T PRK07568 185 EMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIAAAMKLC 262 (397)
T ss_pred HHHHHHHHHC-CcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHHHHHHHh
Confidence 7889999999 99999999999765321 1 11 23569999999999 6999999999986577887765443
Q ss_pred HhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
.. ....+...+..+...++. +...++...+++..+.+.|+.++++
T Consensus 263 ~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 311 (397)
T PRK07568 263 QA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGV 311 (397)
T ss_pred hc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 32 223344444444443332 3334455667777888888766543
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=243.00 Aligned_cols=273 Identities=18% Similarity=0.143 Sum_probs=183.1
Q ss_pred CchHHHHHHHHHHHh----CCC---c-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLE----EAK---H-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~----~~~---~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..+||+++|+++ |.+ + +|++|+|+++ + .++.+++++||.|++++|+|+. +...++..|++++.
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~ 145 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPI----HSQAFILAGGNVHK 145 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcc----hHHHHHhcCCEEEE
Confidence 357788999999986 532 4 7999999876 7 6777889999999999999985 67778889999998
Q ss_pred eCCC-------CHH----HHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 128 VDLR-------KIE----NLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 128 ~~~~-------d~~----~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
++.+ |++ .+++++. ++++++++++||||||.+++ +++|.++|+++ +++||+||+|..+.+..
T Consensus 146 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~ 224 (403)
T PRK08636 146 MPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE-RFYIISDIAYADITFDG 224 (403)
T ss_pred EeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhhccCC
Confidence 8752 344 3455553 46899999999999999998 67788889999 99999999999865431
Q ss_pred ----C---CCC--cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---C-HHH
Q psy12791 191 ----S---LPW--GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK---T-LPC 257 (393)
Q Consensus 191 ----~---~~~--~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 257 (393)
+ ++. +..++++||||.+ |.||+|+||++++ +++++.+...........+...+..+...++ . +..
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~~-~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 302 (403)
T PRK08636 225 YKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVGN-KKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEE 302 (403)
T ss_pred CCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeCC-HHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHH
Confidence 1 111 2346689999999 7999999999987 8888888766553322222222222222222 1 223
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH--HHHHHHHHh-cCcccccccc
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA--EETRIFLES-LLIFRCAESL 334 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~~~~~~~~~ 334 (393)
.++.+.+++..+.+.|+.. ++. +..|. .|.++|+.+++.. .....+.+. ++..++.+.+
T Consensus 303 ~~~~~~~~~~~l~~~L~~~-~~~-~~~p~----------------~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~p 364 (403)
T PRK08636 303 IRETYRKRRDVLIESFANA-GWE-LQKPR----------------ASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSP 364 (403)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCc-ccCCC----------------cceEEEEECCCccCCCCHHHHHHHHHHhCCEEEec
Confidence 3444556667777888764 222 22222 2467899885311 112334433 3334555655
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChH
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYT 377 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~ 377 (393)
|..+.. ..++++||+++ .+.+
T Consensus 365 g~~f~~---------------------~~~~~iRi~~~-~~~~ 385 (403)
T PRK08636 365 GIGFGE---------------------YGDEYVRIALI-ENEN 385 (403)
T ss_pred chhhCc---------------------CCCCeEEEEec-CCHH
Confidence 544310 11479999998 3443
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=243.98 Aligned_cols=249 Identities=17% Similarity=0.186 Sum_probs=174.0
Q ss_pred CCCC-CCCCC---CCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-H
Q psy12791 23 QWRS-QCVIP---PIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-T 88 (393)
Q Consensus 23 ~~~~-~~~~~---p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~ 88 (393)
+.++ +...+ ++.+++.+.+.+.+.+... ...| +.++..+||+++|+++ | .+ ++|++|+|+++ + .
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 108 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG--HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL 108 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC--CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 4556 44444 4666666655544332111 1234 3577899999999987 3 22 67888888765 7 6
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee-CCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV-DLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~-~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
++.+++++||.|++++|+|.. +...++..|.+++.+ +.+ |++++++.+.+++++|++++||||||.+++
T Consensus 109 ~~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~ 184 (398)
T PRK08363 109 IFGALLDPGDEILIPGPSYPP----YTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYE 184 (398)
T ss_pred HHHHhCCCCCEEEEcCCCCcc----hHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcC
Confidence 667788999999999999985 566677888888777 332 678888888888999999999999999998
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcccccCC------CC-CcCcEEEEcccccccCCCCceEEEEEe-cChHHHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQKS------LP-WGVDIVLYSLTKYMNGHSDVVMGATVT-NDDSLQARLK 230 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~~~------~~-~~~di~~~S~sK~~~G~~G~r~G~~~~-~~~~~~~~~~ 230 (393)
+++|.++|+++ ++++|+||+|..+.+... +. ..+.++++||||.+ +.||+|+||+++ +++++++.+.
T Consensus 185 ~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~~~l~ 262 (398)
T PRK08363 185 KKTLKEILDIAGEH-DLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYFVDPEGKLAEVR 262 (398)
T ss_pred HHHHHHHHHHHHHc-CeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhcc-CCccceEEEEEEeCcHHHHHHHH
Confidence 88889999999 999999999987544321 11 13468899999999 699999999998 3366666665
Q ss_pred HHHHhc---CCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 231 FLQNSM---GVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
...... ....+...+..+...+ +.+...++++.++...+.+.|+.++++
T Consensus 263 ~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 318 (398)
T PRK08363 263 EAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGI 318 (398)
T ss_pred HHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 433211 1223444433333333 224445566677777788888776553
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=241.43 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=157.2
Q ss_pred CCCC-chHHHHHHHHHHHh----C---CC-cEEEeccHHHH-H-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 55 RSNN-PTRRNLERCIASLE----E---AK-HGLCYSSGLGA-V-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 55 ~~~~-~~~~~lr~~la~~~----~---~~-~~i~~~~G~~a-l-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
+|++ .+..++|+++|+++ | .+ ++|++|+|+++ + .++..+ +++||.|++++|+|+. +...++..|
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~----~~~~~~~~g 132 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPT----YEVGARLAG 132 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCccc----HHHHHHhcC
Confidence 4443 46678999999987 3 43 78999999887 6 444555 6899999999999984 667778889
Q ss_pred cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC-C------
Q psy12791 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS-L------ 192 (393)
Q Consensus 123 ~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~-~------ 192 (393)
++++.++ +++++.. +++++|++++||||||.+++ +++|.++|+++ +++||+||+|..+.+..+ .
T Consensus 133 ~~~~~~~--~~~~l~~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~ 206 (364)
T PRK07865 133 ATVVRAD--SLTELGP---QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARER-GAVVASDECYLELGWDAEPVSILDPR 206 (364)
T ss_pred CEEEecC--ChhhCCc---ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhhhccCCCCCcccccc
Confidence 9998875 4444432 57899999999999999998 56788888999 999999999997554321 1
Q ss_pred ----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHH
Q psy12791 193 ----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERG 265 (393)
Q Consensus 193 ----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 265 (393)
...+.++++||||.+ |.+|+|+||++++ +++++.++......+...+...+..+...++. +...++...++
T Consensus 207 ~~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 284 (364)
T PRK07865 207 VCGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARR 284 (364)
T ss_pred ccCCccceEEEEeechhcc-CCCceeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 113569999999999 6999999999987 88888887766555555556555555555543 33344455566
Q ss_pred HHHHHHHHhhC
Q psy12791 266 SIEVAKFLESH 276 (393)
Q Consensus 266 ~~~l~~~l~~~ 276 (393)
...+.+.|+..
T Consensus 285 ~~~l~~~L~~~ 295 (364)
T PRK07865 285 RAVLRPALEAA 295 (364)
T ss_pred HHHHHHHHHHc
Confidence 67777777754
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=241.16 Aligned_cols=294 Identities=16% Similarity=0.173 Sum_probs=205.4
Q ss_pred chHHHHHHHHHHHhCC-C-cEEEeccHHHH-H-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLEEA-K-HGLCYSSGLGA-V-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~-~-~~i~~~~G~~a-l-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...+++|+.+|+++|+ + ++|++++|+++ + .++..+ +++||+|++++++|++.+..+...++..|++++.++.
T Consensus 63 ~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 142 (401)
T PRK10874 63 ARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPL 142 (401)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEec
Confidence 3467899999999998 4 68888888776 6 555554 4789999999999998777788888889999999886
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLT 204 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~s 204 (393)
+ |++++++.+.++|++|++++|+||||.++|+++|.++|+++ |+++++|++|+.+.....+ ..+.|+++.|+|
T Consensus 143 ~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~-g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~ 221 (401)
T PRK10874 143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQA-GMVVMVDGAQGAVHFPADVQALDIDFYAFSGH 221 (401)
T ss_pred CCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHc-CCEEEEECCcccccccCCchhcCCCEEEEecc
Confidence 4 68999999998999999999999999999999999999999 9999999999865442222 246899999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhccCC-----HHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN---------------------SMGVVPSPFDCWLVTRGLKT-----LPCR 258 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~-----~~~~ 258 (393)
|++ |++| +||++.+ +++++.+..... ...++.+......+..+++. ....
T Consensus 222 K~~-gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~ 297 (401)
T PRK10874 222 KLY-GPTG--IGVLYGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQA 297 (401)
T ss_pred ccc-CCCc--cEEEEEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHH
Confidence 987 7998 7999987 777776532210 00011221222222222222 2223
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCcc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
.++..+....+.+.|+.++++..+..+ .++++.|.+++ . ..+.+.+.|...++.++.|..+
T Consensus 298 ~~~~~~l~~~l~~~l~~~~g~~~~~~~-----------------~~~i~~~~~~~-~-~~~~~~~~L~~~gI~v~~g~~~ 358 (401)
T PRK10874 298 ESWSRSLATLAEDALAKLPGFRSFRCQ-----------------DSSLLAFDFAG-V-HHSDLVTLLAEYGIALRAGQHC 358 (401)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCC-----------------CCcEEEEEECC-c-CHHHHHHHHHHCCcEEeccccc
Confidence 344445566677777766665422111 14678888743 1 1234444444456666665543
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.. ....+|. .++||+|++.++++++++.+.++|+++.
T Consensus 359 ~~~--------------~~~~~g~-~~~iRiS~~~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 359 AQP--------------LLAALGV-TGTLRASFAPYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred hHH--------------HHHHhCC-CCEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 210 0111222 4799999999999999999999998764
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=242.59 Aligned_cols=268 Identities=19% Similarity=0.159 Sum_probs=185.9
Q ss_pred chHHHHHHHHHHHh----CC--C-c-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASLE----EA--K-H-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~~--~-~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+..+||+++|+++ |. + + ++++|+|+++ + .++..++++||+|++++|+|+. +...++..|++++.+
T Consensus 67 ~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v 142 (395)
T PRK08175 67 RGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPI----HIYGAVIAGAQVRSV 142 (395)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcc----hHHHHHHcCCeEEEE
Confidence 46789999999975 33 2 4 7999999876 6 6666788999999999999985 455567789999988
Q ss_pred CCC----CHHHHHhhcC---CCCcEEEEecCCCCcccccCH---HHHHHHHHhCCCcEEEEeCccCcccccC----CC--
Q psy12791 129 DLR----KIENLIKYIK---PNTKMVWIENPTNPLMTVFDV---KAISAVVKQHPDILLVLDNTFLTAYYQK----SL-- 192 (393)
Q Consensus 129 ~~~----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~---~~l~~l~~~~~~~~livDea~~~~~~~~----~~-- 192 (393)
+.+ +.+++++.+. +++++|++++||||||.+++. ++|.++|+++ |+++|+||+|.++.+.. ++
T Consensus 143 ~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~~~~~ 221 (395)
T PRK08175 143 PLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQ 221 (395)
T ss_pred ecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhccCCCCCcchhc
Confidence 875 3677777665 368999999999999999996 7888899999 99999999998765421 11
Q ss_pred -C--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHH
Q psy12791 193 -P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERG 265 (393)
Q Consensus 193 -~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 265 (393)
. .+..++++||||.+ |.||+|+||++++ +++++.+...........+...+..+...++. +...++.+.++
T Consensus 222 ~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 299 (395)
T PRK08175 222 VPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRR 299 (395)
T ss_pred CCCcccCEEEEeeccccc-cCcchhheeeeCC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 13457899999999 7999999999987 88999887766543333333333333333322 33345556677
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH--HHHHHHHh-cCccccccccCCcccccc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE--ETRIFLES-LLIFRCAESLGGIESLAD 342 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~g~~~s~~~ 342 (393)
+..+.+.|+.. ++. +..|. .+.++|+.++.... ....+..+ ++..++.+..|..+..
T Consensus 300 ~~~~~~~L~~~-~~~-~~~p~----------------~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~-- 359 (395)
T PRK08175 300 RDVLVKGLHEA-GWM-VEMPK----------------ASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD-- 359 (395)
T ss_pred HHHHHHHHHHc-CCc-ccCCC----------------EEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc--
Confidence 77788888765 222 22221 25678999853211 23444443 3344666666544310
Q ss_pred CcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 343 LPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
..++++||+++
T Consensus 360 -------------------~~~~~lRis~~ 370 (395)
T PRK08175 360 -------------------YGDTHVRFALI 370 (395)
T ss_pred -------------------CCCCeEEEEeC
Confidence 11478999997
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=237.82 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=193.7
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----C---CC-cEEEeccHHHH-H-H
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----E---AK-HGLCYSSGLGA-V-T 88 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~---~~-~~i~~~~G~~a-l-~ 88 (393)
+.+.++ +.+.+...+++.+.+.+.+. . ....|++ .+..+||+++++++ | .+ ++|++|+|+++ + .
T Consensus 20 ~~~~i~l~~~~p~~~~~~~~~~~~~~~-~---~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~ 95 (357)
T TIGR03539 20 PDGIVDLSVGTPVDPVPPLIRAALAAA-A---DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW 95 (357)
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHH-H---hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence 345566 55433333344444443222 1 2334544 45778999999987 3 43 79999999876 6 4
Q ss_pred HHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC---HHH
Q psy12791 89 AVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKA 164 (393)
Q Consensus 89 ~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~ 164 (393)
++..+ +++||.|++++|+|+. +...++..|++++.++ +++.+. .+++++|++++|+||||.+++ +++
T Consensus 96 ~~~~l~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 166 (357)
T TIGR03539 96 LPTLLGLGPGDTVVIPELAYPT----YEVGALLAGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRA 166 (357)
T ss_pred HHHHHcCCCCCEEEECCCCcHH----HHHHHHhcCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHH
Confidence 44455 6899999999999974 5666778899988875 444332 357899999999999999998 667
Q ss_pred HHHHHHhCCCcEEEEeCccCcccccC-CC----------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 165 ISAVVKQHPDILLVLDNTFLTAYYQK-SL----------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 165 l~~l~~~~~~~~livDea~~~~~~~~-~~----------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
|.++|+++ |+++|+||+|.++.+.. +. .....++++||||.+ |++|+|+||++++ +++++.++...
T Consensus 167 i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~-~~~~~~~~~~~ 243 (357)
T TIGR03539 167 IVAWARER-GAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGD-PALVAELLTVR 243 (357)
T ss_pred HHHHHHHc-CeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc-CCCceeEEEEecC-HHHHHHHHHHH
Confidence 88889999 99999999998644321 11 123469999999999 6999999999987 88888887766
Q ss_pred HhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
...+...+...+..+...++. +...+..+.+++..+.+.|+.. ++. +..|. .+.++|+.
T Consensus 244 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~~p~----------------~~~~~~~~ 305 (357)
T TIGR03539 244 KHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFR-IDHSE----------------AGLYLWAT 305 (357)
T ss_pred hhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-CcCCC----------------ccEEEEEE
Confidence 554555555555555555544 2233444556666777777654 222 11121 13457777
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
++.+ ...+.+.+...++.+.+|..+. . ..++++|+|++.
T Consensus 306 ~~~~---~~~~~~~l~~~gV~v~pg~~f~---~------------------~~~~~iRis~~~ 344 (357)
T TIGR03539 306 RGED---AWDTVDRLAELGILVAPGDFYG---P------------------AGSQHVRVALTA 344 (357)
T ss_pred CCCC---HHHHHHHHHhCCEEECCccccC---C------------------CCCCeEEEEecC
Confidence 7322 2334444544466665554321 0 015799999986
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=241.19 Aligned_cols=216 Identities=19% Similarity=0.284 Sum_probs=151.3
Q ss_pred CCchHHHHHHHHHHHh----CC--C-cEEEeccHHHH-HHHHHHhcCCCCeEEEcCCCccchHHHHHHh-cccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLE----EA--K-HGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFAQV-APKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~----~~--~-~~i~~~~G~~a-l~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~-~~~~g~~v~~ 127 (393)
+..+..+||+++|+++ |. + ++|++|+|+++ +..+..++.+||.|++++|+|+. +... ....|++++.
T Consensus 71 ~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~----~~~~~~~~~g~~~v~ 146 (433)
T PRK06855 71 PTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYST----HSSAEAAHAGYPPVT 146 (433)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCch----HHHHHHHhcCCeEEE
Confidence 3567889999999987 33 2 68999999876 63334578999999999999985 3322 2345778777
Q ss_pred eCCC-------CHHHHHhhcC--CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-C-CC
Q psy12791 128 VDLR-------KIENLIKYIK--PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-S-LP 193 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~--~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~-~~ 193 (393)
++.+ |++++++.+. ++++++++++||||||.+++ +++|.++|+++ +++||+||+|..+.+.. + ..
T Consensus 147 v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~s 225 (433)
T PRK06855 147 YRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYNGKKTVP 225 (433)
T ss_pred EecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCC
Confidence 7643 6899998886 35799999999999999999 66778888999 99999999999875532 1 11
Q ss_pred -----C-cCcEEEEcccccccCCCCceEEEEEecC----hHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCC------H
Q psy12791 194 -----W-GVDIVLYSLTKYMNGHSDVVMGATVTND----DSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKT------L 255 (393)
Q Consensus 194 -----~-~~di~~~S~sK~~~G~~G~r~G~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~ 255 (393)
. ...++++||||.+ ++||+|+||+++++ +.+.+.++..... .....+...+.++...++. +
T Consensus 226 l~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~ 304 (433)
T PRK06855 226 LSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYL 304 (433)
T ss_pred HHHHcCcCCeEEEecCcccc-CCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHH
Confidence 1 2359999999999 69999999999832 3223333222211 1223344555555554432 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
...++.+.++++.+.+.|+.+++
T Consensus 305 ~~~~~~~~~r~~~~~~~L~~~~~ 327 (433)
T PRK06855 305 KERNKRYEKRSNIAYEKLKDVPG 327 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455556677777888876544
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=239.68 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=188.8
Q ss_pred CCchHHHHHHHHHHHhCC-------CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLEEA-------KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~-------~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
+..+..++|+++|++++. ++.+++|+|+++ + .++.++..+||+|++++|+|.. +...++..|++++.
T Consensus 71 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~ 146 (403)
T TIGR01265 71 PSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPL----YDTRAAFSGLEVRL 146 (403)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchh----HHHHHHHcCCEEEE
Confidence 456788899999999874 257778888665 7 6677778999999999999984 66677888999988
Q ss_pred eCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-C---C-
Q psy12791 128 VDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-S---L- 192 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~---~- 192 (393)
++.+ |++++++.+.++++++++++||||||.+++ +++|.++|+++ |+++|+|++|.++.+.. + +
T Consensus 147 ~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~ 225 (403)
T TIGR01265 147 YDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGDAPFIPMA 225 (403)
T ss_pred ecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCCCccchh
Confidence 8652 688999888888999999999999999997 78899999999 99999999999875432 1 1
Q ss_pred --C-CcCcEEEEcccccccCCCCceEEEEEecCh-H-----HHHHHHHHHHhcCCCCCHHHHHHHHhccC-----CHHHH
Q psy12791 193 --P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-S-----LQARLKFLQNSMGVVPSPFDCWLVTRGLK-----TLPCR 258 (393)
Q Consensus 193 --~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 258 (393)
. ....++++||||.+ +.||+|+||++++++ . +.+.+...... ....+...+..+...++ .+...
T Consensus 226 ~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~ 303 (403)
T TIGR01265 226 SFASIVPVLSLGGISKRW-VVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGK 303 (403)
T ss_pred hhccCCcEEEEeeccccc-CCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHH
Confidence 1 12468999999999 699999999998533 2 33333333221 22334444444433332 23445
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH----HHHHHHHHh-cCccccccc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA----EETRIFLES-LLIFRCAES 333 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-l~~~~~~~~ 333 (393)
++++.+++..+.+.|+.++++. +..|. .+.++|+.++... .....+.+. ++..++.+.
T Consensus 304 ~~~~~~~~~~l~~~L~~~~~~~-~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~ 366 (403)
T TIGR01265 304 ISVLKSNAELCYEELKDIPGLV-CPKPE----------------GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICL 366 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCce-ecCCC----------------ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEe
Confidence 5666677778888888765542 22332 2567888884210 123344444 344466666
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE 374 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 374 (393)
+|..+. .+++||+|++..
T Consensus 367 pg~~f~-----------------------~~~~iRis~~~~ 384 (403)
T TIGR01265 367 PGSAFG-----------------------LPNWVRITITVP 384 (403)
T ss_pred CccccC-----------------------CCCeEEEEecCC
Confidence 654431 157999999964
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=239.12 Aligned_cols=282 Identities=16% Similarity=0.180 Sum_probs=190.8
Q ss_pred chHHHHHHHHHHHhC--------CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCCcEEE
Q psy12791 59 PTRRNLERCIASLEE--------AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIGLEVD 126 (393)
Q Consensus 59 ~~~~~lr~~la~~~~--------~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~v~ 126 (393)
.+..+||+++|++++ .+ ++|++|+|+++ + .++..++.+||.|+++.|+|++ +...+. ..|++++
T Consensus 95 ~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~----f~~~~~~~~g~~vv 170 (447)
T PLN02607 95 HGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPG----FDRDLRWRTGVKIV 170 (447)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcc----hHHHHHhcCCcEEE
Confidence 477899999999874 22 68999999886 6 6666788999999999999985 444444 5789998
Q ss_pred eeCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 127 FVDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 127 ~~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
.++.+ |++.+++++.+ ++|+++++|||||||.+++ +++|.++|+++ ++++|+||+|+...+..
T Consensus 171 ~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 171 PIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEeccccccccCC
Confidence 88764 57788877753 6899999999999999998 67788889999 99999999999754421
Q ss_pred C-C-------------C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-
Q psy12791 191 S-L-------------P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 191 ~-~-------------~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (393)
+ . + ....+++.|+||.| |.+|+|+||+++.++.+.+.++..... . ..+...+.++...++.
T Consensus 250 ~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs~n~~l~~~~~~~~~~-~-~~s~~~q~~~~~~L~d~ 326 (447)
T PLN02607 250 SEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTARRMSSF-T-LVSSQTQHLLASMLSDE 326 (447)
T ss_pred CCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEEcCHHHHHHHHHHhhc-C-CCCHHHHHHHHHHhCCc
Confidence 1 0 1 23458899999999 799999999999657787776654432 2 2233344444444432
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----HHHHHHHHH
Q psy12791 255 ------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-----AEETRIFLE 323 (393)
Q Consensus 255 ------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 323 (393)
+...++++.++.+.+.++|+.. ++. +..+ ..|.++|+.++.. .+....+.+
T Consensus 327 ~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~-~~~~----------------~ag~fvw~~L~~~~~~~~~~~e~~l~~ 388 (447)
T PLN02607 327 EFTENYIRTNRERLRKRYEMIVQGLRRA-GIE-CLKG----------------NAGLFCWMNLSPLLETPTREGELALWD 388 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-cccC----------------CeeEEEEEEchHhhcCCCchhHHHHHH
Confidence 2233455566777788888764 222 1111 1256789988421 122234443
Q ss_pred hc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH---HHHHHHHHH
Q psy12791 324 SL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD---LIADLDQAL 387 (393)
Q Consensus 324 ~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~---~i~~l~~al 387 (393)
.+ +..++.+.+|..+.. ..++++|++++..+.+. -++++.+++
T Consensus 389 ~ll~~~gV~v~pG~~f~~---------------------~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 389 SILREVKLNISPGSSCHC---------------------SEPGWFRVCFANMSEDTLEVALKRIHRFM 435 (447)
T ss_pred HHHHhCCEEEcCccccCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 33 344666777654321 12699999999744433 334444444
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=237.89 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=176.8
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC---CcEEEeccHHH-HH-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA---KHGLCYSSGLG-AV-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~---~~~i~~~~G~~-al-~~~~ 91 (393)
+.++ +.+.+++.+++.+.+.+.+.+... ..+|++ .+..+||+++++++ |. +++|++|+|++ ++ .++.
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (402)
T PRK06107 34 SIVDLTVGEPDFDTPDHIKQAAVAAIERG--ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM 111 (402)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence 4556 566666666665555443322111 123433 46678888887764 54 26788999865 57 6667
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||.|++++|+|.. |.......+..++.++.+ |++++++.+.+++++|++++|+||||.+++
T Consensus 112 ~~~~~gd~vl~~~p~y~~----y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~ 187 (402)
T PRK06107 112 ATLEAGDEVIIPAPYWVS----YPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAE 187 (402)
T ss_pred HhcCCCCEEEEecCCCcC----HHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHH
Confidence 788999999999999985 445556667777777652 568899988888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC-CCC---------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK-SLP---------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~---------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|+++|++++++++|+||+|....+.. +.. .+..++++||||.+ |+||+|+||++++ +++.+.+..
T Consensus 188 ~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~-~~~~~~~~~ 265 (402)
T PRK06107 188 LRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGP-ADLIAAINK 265 (402)
T ss_pred HHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecC-HHHHHHHHH
Confidence 45667777885489999999998654321 111 13569999999999 6999999999997 889998887
Q ss_pred HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
.........+...+.++...++. +...++.+.+++..+.+.|++++++
T Consensus 266 ~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 317 (402)
T PRK06107 266 LQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGL 317 (402)
T ss_pred HHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 77665566666666666555432 3344555667777788888766543
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=237.06 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
..+++|+.+|+++|.+ ++|++++|+++ + .++.++ +++||+|++++++|++.+..+...++..|++++.++.+
T Consensus 61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~ 140 (398)
T TIGR03392 61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG 140 (398)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence 3567999999999984 68888888776 6 555555 47899999999999987666777788999999999874
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.++|++|++++|+||||.++|+++|.++|+++ |+++++|++|+.+...... ..+.|+++.|+||
T Consensus 141 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~-~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K 219 (398)
T TIGR03392 141 ADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQY-GAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHK 219 (398)
T ss_pred CCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHc-CCEEEEEhhhhcCCCCCChhhcCCCEEEEeccc
Confidence 68999999988999999999999999999999999999999 9999999999865543222 2468999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhccCC-----HHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS---------------------MGVVPSPFDCWLVTRGLKT-----LPCRL 259 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~-----~~~~~ 259 (393)
.+ |++| +||++.+ +++++.+...... -.++.+......+..+++. +....
T Consensus 220 ~~-gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~ 295 (398)
T TIGR03392 220 LY-GPTG--IGVLYGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAE 295 (398)
T ss_pred cc-CCCc--eEEEEEc-HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 88 7888 8999987 7777665321100 0011221122222222221 22233
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
++..+..+.+.+.|+.++++.....+ .+++++|.+++ . ..+.+.+.|...++.++.|..++
T Consensus 296 ~~~~~l~~~l~~~l~~l~g~~~~~~~-----------------~~~i~~~~~~~-~-~~~~l~~~L~~~gI~v~~g~~~~ 356 (398)
T TIGR03392 296 AWSVSLADLAEERLAQLPGFRSFRCP-----------------GSSLLAFDFAG-V-HHSDLAALLAESGIALRAGQHCA 356 (398)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCC-----------------CCcEEEEEeCC-c-CHHHHHHHHHhCCEEEecCccch
Confidence 44445566667777766665321111 14678888753 1 12345555555577777665443
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.. ....+|. +++||+|++.++|+++++.+.++|+++.
T Consensus 357 ~~--------------~~~~~g~-~~~iRvS~~~~~t~~ei~~l~~~l~~~~ 393 (398)
T TIGR03392 357 QP--------------LMAALGV-SGTLRASFAPYNTQQDVDALVDAVGAAL 393 (398)
T ss_pred HH--------------HHHHhCC-CCEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 11 0011222 4799999999999999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=239.58 Aligned_cols=294 Identities=16% Similarity=0.168 Sum_probs=206.6
Q ss_pred chHHHHHHHHHHHhCC-C-cEEEeccHHHH-H-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLEEA-K-HGLCYSSGLGA-V-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~-~-~~i~~~~G~~a-l-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...+++|+++|+++|. + +.|++++|+++ + .++.. .+++||+|++++++|++++..+...++..|++++.++.
T Consensus 67 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T PRK09295 67 EKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_pred HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence 3467899999999997 3 68888888776 6 44443 46899999999999998877788888889999999876
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLT 204 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~s 204 (393)
+ |++++++.+++++++|++++|+||||.++|+++|.++|+++ |+++++|++|+.+....++ ..++|+++.|+|
T Consensus 147 ~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~-~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~ 225 (406)
T PRK09295 147 NPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQH-GAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH 225 (406)
T ss_pred CCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHc-CCEEEEEcccccCccccCchhcCCCEEEeehh
Confidence 4 78999999988999999999999999999999999999999 9999999999876543333 257899999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHh----------------------cCCCCCHHHHHHHHhccCC-----HHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNS----------------------MGVVPSPFDCWLVTRGLKT-----LPC 257 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~-----~~~ 257 (393)
|.+ |++| +||++.+ +++.+.+...... ..++.+......+..+++. .+.
T Consensus 226 K~~-gp~G--~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~ 301 (406)
T PRK09295 226 KLY-GPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNN 301 (406)
T ss_pred hcc-CCCC--cEEEEEc-hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHH
Confidence 977 7888 8999997 6666654321110 0112222222222222222 222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCC
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
..++..+....+.+.|++++++..+ .|. ...+++.|.+++ +.++ +.+.|...++.++.|.
T Consensus 302 i~~~~~~l~~~l~~~l~~~~~~~~~-~~~---------------~~~~iv~~~~~~~~~~~---~~~~L~~~gI~v~~g~ 362 (406)
T PRK09295 302 IAEYEQNLMHYALSQLESVPDLTLY-GPQ---------------NRLGVIAFNLGKHHAYD---VGSFLDNYGIAVRTGH 362 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEe-CCC---------------CCceEEEEEECCcCHHH---HHHHHHhCCeEEeccc
Confidence 3334444555666677666655322 121 024788888853 3333 3344444566666665
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.|+... ...+|. ++.+|+|++.++++++++.+.++|+++.
T Consensus 363 ~c~~~~--------------~~~~~~-~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 363 HCAMPL--------------MAYYNV-PAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred cchHHH--------------HHHHCC-CCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 443110 111222 4789999999999999999999998875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=237.55 Aligned_cols=272 Identities=18% Similarity=0.186 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHH----hCCC---c-EEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASL----EEAK---H-GLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~----~~~~---~-~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+..++|++++++ +|.+ + +|++|+|+++ + .++..++++||+|+++.|+|+. +...++..|.+++.+
T Consensus 61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~----~~~~~~~~g~~~~~~ 136 (387)
T PRK07777 61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDS----YAAVIAMAGAHRVPV 136 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh----hHHHHHHCCCEEEEe
Confidence 5688999999986 3543 3 6888888665 7 6677888999999999999985 566677889888887
Q ss_pred CCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CCC
Q psy12791 129 DLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SLP 193 (393)
Q Consensus 129 ~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~~ 193 (393)
+.+ |++++++.+.+++++|++++||||||.+++ +++|.++|+++ ++++|+||+|..+.+.. ++.
T Consensus 137 ~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~ 215 (387)
T PRK07777 137 PLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFDGARHLPLA 215 (387)
T ss_pred ecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccCCCCcccHh
Confidence 653 678899988888999999999999999997 77889999999 99999999998755321 111
Q ss_pred -----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc---C-CHHHHHHHHHH
Q psy12791 194 -----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL---K-TLPCRLKEHER 264 (393)
Q Consensus 194 -----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 264 (393)
.+++++++||||.+ |++|+|+||++++ +++++.+...........+...+..+...+ + .+...++.+.+
T Consensus 216 ~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 293 (387)
T PRK07777 216 TLPGMRERTVTISSAAKTF-NVTGWKIGWACGP-APLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQA 293 (387)
T ss_pred hCCCCcCcEEEEeechhhc-cCcCceeEEEecC-HHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 24679999999999 6999999999987 788888776554333222222222222222 2 23334556667
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhc-CccccccccCCcccccc
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESL-LIFRCAESLGGIESLAD 342 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~ 342 (393)
++..+.+.|+++ ++. +..|. .+.++|+.+++ .......|.+.+ +..++.+.+|..+....
T Consensus 294 ~~~~l~~~L~~~-~~~-~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~ 355 (387)
T PRK07777 294 KRDRLAAGLAEA-GFE-VHDSA----------------GTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPA 355 (387)
T ss_pred HHHHHHHHHHhC-CCC-ccCCC----------------cceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCC
Confidence 777888888764 222 11111 13457777631 111234555555 34466676665542110
Q ss_pred CcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 343 LPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
. ..++++||+++.
T Consensus 356 ~------------------~~~~~~Ri~~~~ 368 (387)
T PRK07777 356 D------------------AWNHLVRFAFCK 368 (387)
T ss_pred c------------------CCCCeEEEEecC
Confidence 0 125799999986
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=242.57 Aligned_cols=311 Identities=18% Similarity=0.194 Sum_probs=211.1
Q ss_pred CCCC-CCCCCCCc----cCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhC------CC-c-EEEeccHHHH-H
Q psy12791 23 QWRS-QCVIPPII----LSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEE------AK-H-GLCYSSGLGA-V 87 (393)
Q Consensus 23 ~~~~-~~~~~p~~----~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~------~~-~-~i~~~~G~~a-l 87 (393)
+.|+ ++|.++.. +.+.+.++..+..........|++ .+..+||+++|++++ .+ + .+++++|+.+ +
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 3455 67777776 444444443320001122334434 468999999999988 33 5 8999999998 4
Q ss_pred HH-HHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCC------CCcEEEEecC
Q psy12791 88 TA-VTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKP------NTKMVWIENP 152 (393)
Q Consensus 88 ~~-~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~------~~~~v~l~~p 152 (393)
.. ...+ ..+||.|++++|+|+. +...++..|++++.++.+ |++++++.+++ ++++|++++|
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p 157 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPS----YIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNP 157 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTH----HHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESS
T ss_pred hhhhhcccccccccceecCCcccc----ccccccccCceeeeccccccccccccccccccccccccccccccceeeeccc
Confidence 44 4455 5699999999999994 778888999999999842 88999998876 5789999999
Q ss_pred CCCcccccCHHHHHH---HHHhCCCcEEEEeCccCcccccCC-----C---CC-cCcEEEEcccccccCCCCceEEEEEe
Q psy12791 153 TNPLMTVFDVKAISA---VVKQHPDILLVLDNTFLTAYYQKS-----L---PW-GVDIVLYSLTKYMNGHSDVVMGATVT 220 (393)
Q Consensus 153 ~nptG~~~~~~~l~~---l~~~~~~~~livDea~~~~~~~~~-----~---~~-~~di~~~S~sK~~~G~~G~r~G~~~~ 220 (393)
+||||.+++.+++.+ +|+++ ++++|+||+|..+.+..+ . .. ...++++|+||.+ |.+|+|+||+++
T Consensus 158 ~nPtG~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~ 235 (363)
T PF00155_consen 158 NNPTGSVLSLEELRELAELAREY-NIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVA 235 (363)
T ss_dssp BTTTTBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEE
T ss_pred ccccccccccccccchhhhhccc-ccceeeeeceeccccCCCccCcccccccccccceeeeeccccc-cccccccccccc
Confidence 999999998555555 59999 999999999998776532 1 11 2359999999999 799999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcch
Q psy12791 221 NDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK-------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNH 293 (393)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~ 293 (393)
+ +++++.++.....+.. +...+.++...+. .+...++++.++...+.+.|++. ++. +..+.
T Consensus 236 ~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~-~~~~~------- 303 (363)
T PF00155_consen 236 P-PELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT-VLPPE------- 303 (363)
T ss_dssp E-HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE-EEHHS-------
T ss_pred h-hhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh-eeecc-------
Confidence 6 8999999887776554 3333333222221 34456667777888888888765 333 22111
Q ss_pred HHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 294 ELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
.+.++|+.+. ......+.+.|... ++.+.+|..+. . ++++|+++
T Consensus 304 ---------~~~~~~~~~~--~~~~~~l~~~L~~~~gi~v~pg~~~~----------------------~-~~~iRi~~- 348 (363)
T PF00155_consen 304 ---------AGFFLWVRLD--PNDAEELAQELLEEYGILVRPGSYFG----------------------V-PGYIRISL- 348 (363)
T ss_dssp ---------BSSEEEEEES--HHHHHHHHHHHHHHHTEEEEEGGGGT----------------------S-TTEEEEEG-
T ss_pred ---------CccEEEEEcc--cchHHHHHHHHHHhCCEEEEecCCCC----------------------C-CCEEEEEe-
Confidence 1456777773 33455566655443 55555544321 1 58999999
Q ss_pred CCChHHHHHHHHHH
Q psy12791 373 VEGYTDLIADLDQA 386 (393)
Q Consensus 373 ~~~~~~~i~~l~~a 386 (393)
...+++.++.+.++
T Consensus 349 a~~~~e~~~~~~~~ 362 (363)
T PF00155_consen 349 ASHSEEDLEEALER 362 (363)
T ss_dssp GCSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhh
Confidence 55555545555443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=238.35 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=173.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCC-CchHHHHHHHHHHH----hCCC----cEEEeccHHH-HH-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSN-NPTRRNLERCIASL----EEAK----HGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~lr~~la~~----~~~~----~~i~~~~G~~-al-~~~ 90 (393)
+.++ +.+.+++.+++.+.+.+...... .+..|+ ..+..++|++++++ ++.+ +++++|+|++ ++ .++
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~ 108 (386)
T PRK09082 31 GAINLSQGFPDFDGPPYLVEALAYAMAA--GHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAI 108 (386)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHH
Confidence 3455 55556655555444433222111 122332 34567788888775 4543 3688888866 57 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
..++.+||+|++++|+|.. +...++..|.+++.++.+ |++++++.+.+++++|++++|+||||.+++
T Consensus 109 ~~~~~~gd~Vli~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 184 (386)
T PRK09082 109 LALVRPGDEVIVFDPSYDS----YAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAAD 184 (386)
T ss_pred HHHcCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHH
Confidence 7788999999999999985 566677789999999874 678999999888999999999999999986
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----CC----C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL----P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~~----~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ ++++|+|++|..+.+.. .+ . .++.++++||||.+ |.+|+|+||++++ +++++.++..
T Consensus 185 ~~~i~~~a~~~-~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~-~~l~~~~~~~ 261 (386)
T PRK09082 185 MRALWQLIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAP-AALSAEFRKV 261 (386)
T ss_pred HHHHHHHHHHC-CEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCC-HHHHHHHHHH
Confidence 77889999999 99999999998765421 11 1 24679999999999 6999999999997 8888888776
Q ss_pred HHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~ 275 (393)
........+...+..+...++ .+...++.+.++...+.+.|+.
T Consensus 262 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 308 (386)
T PRK09082 262 HQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN 308 (386)
T ss_pred HhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654333444444443333332 1333345556777778888875
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=235.22 Aligned_cols=266 Identities=20% Similarity=0.236 Sum_probs=186.2
Q ss_pred CCchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
+..+..++|+.+|++++ . +++|++++|+++ + .++..++++||.|++++|+|.. +...++..|++++.
T Consensus 71 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~----~~~~~~~~g~~v~~ 146 (394)
T PRK06836 71 PNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVE----YRFYVDNHGGKLVV 146 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcc----HHHHHHHcCCEEEE
Confidence 45678899999999874 2 367888888765 7 6677788999999999999985 56667888999999
Q ss_pred eCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHh------CCCcEEEEeCccCcccccC-C
Q psy12791 128 VDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQ------HPDILLVLDNTFLTAYYQK-S 191 (393)
Q Consensus 128 ~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~------~~~~~livDea~~~~~~~~-~ 191 (393)
++.+ |++++++.+++++++|++++||||||.++| +++|.++|++ + ++++|+|++|.++.+.. +
T Consensus 147 v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~-~~~ii~De~y~~~~~~~~~ 225 (394)
T PRK06836 147 VPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR-PIYLISDEPYREIVYDGAE 225 (394)
T ss_pred EecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC-CeEEEEeccccccccCCCC
Confidence 9874 689999999888999999999999999998 6677777888 8 99999999999765421 1
Q ss_pred C-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHH---HHHH---HHhcC-CCCCHHHHHHHHhccCCHHHHH
Q psy12791 192 L-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR---LKFL---QNSMG-VVPSPFDCWLVTRGLKTLPCRL 259 (393)
Q Consensus 192 ~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~---~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
. ..++.++++||||.+ |.||+|+||++++ +.+.+. +... ....+ ...+...+..+...++.. ..+
T Consensus 226 ~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~ 302 (394)
T PRK06836 226 VPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVN-PEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDV 302 (394)
T ss_pred CCChHHccCcEEEEecchhhc-cCcceeeEEEecC-HHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHH
Confidence 1 124679999999999 6999999999997 555332 1111 11112 234444555555555442 234
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
+.+.++...+.+.|+.+ ++. +..|. .+.++|+.++. . ....+.+.+...++.+..|..+.
T Consensus 303 ~~~~~~r~~l~~~L~~~-g~~-~~~~~----------------gg~~~~~~~~~-~-~~~~~~~~l~~~gv~v~~g~~f~ 362 (394)
T PRK06836 303 SIYKRNRDLLYDGLTEL-GFE-CVKPQ----------------GAFYLFPKSPE-E-DDVAFCEKAKKHNLLLVPGSGFG 362 (394)
T ss_pred HHHHHHHHHHHHHHHhC-CCE-eecCC----------------ceEEEEEeCCC-C-CHHHHHHHHHhCCEEEECchhcC
Confidence 55666777788888765 222 22222 13467877742 1 23344455555566666554331
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
.++++||+++.
T Consensus 363 -----------------------~~~~iRi~~~~ 373 (394)
T PRK06836 363 -----------------------CPGYFRLSYCV 373 (394)
T ss_pred -----------------------CCCeEEEEecC
Confidence 14799999983
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=234.05 Aligned_cols=299 Identities=17% Similarity=0.166 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
..+++|+.+|+++|.+ ++|++++|+++ + .++.. .+++||+|++++++|++++..+...++..|++++.++.+
T Consensus 77 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~ 156 (424)
T PLN02855 77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT 156 (424)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3578999999999984 58888888776 6 44433 368899999999999988777888888899999998764
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++++||||.++|+++|.++|+++ |+++++|++|+.+.....+ ..++|+++.|+||
T Consensus 157 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~-g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K 235 (424)
T PLN02855 157 PDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAV-GAKVLVDACQSVPHMPVDVQTLGADFLVASSHK 235 (424)
T ss_pred CCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHc-CCEEEEEhhhhcCCcCCCchhcCCCEEEeeccc
Confidence 78999999988999999999999999999999999999999 9999999999865442222 2468999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhccC-----CHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS---------------------MGVVPSPFDCWLVTRGLK-----TLPCRL 259 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-----~~~~~~ 259 (393)
++ |++| +||++.+ +++++++...... ..++......+.+...++ .+....
T Consensus 236 ~~-gp~G--~G~l~~~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~ 311 (424)
T PLN02855 236 MC-GPTG--IGFLWGK-SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIH 311 (424)
T ss_pred cc-CCCc--cEEEEEc-hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 76 7888 8999997 6776665322100 001111111111222222 233334
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc-ccccccCCcc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF-RCAESLGGIE 338 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~ 338 (393)
++..+..+.+.+.|+.++++. +..+. .... ...++++.|.+++ ...+.+.+.|... ++.++.|..|
T Consensus 312 ~~~~~l~~~l~~~L~~~~g~~-i~~~~-~~~~---------~~r~~~v~~~~~~--~~~~~v~~~L~~~~gI~v~~g~~c 378 (424)
T PLN02855 312 EYEVELGTYLYEKLSSVPGVR-IYGPK-PSEG---------VGRAALCAFNVEG--IHPTDLSTFLDQQHGVAIRSGHHC 378 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCC-cccc---------cCcccEEEEEECC--cCHHHHHHHhcccCCEEEechhhh
Confidence 444555666677777666654 22221 0000 0125788888853 2234566666544 6666666544
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+... ...+|. +++||+|++.++++++++.+.++|+++.
T Consensus 379 ~~~~--------------~~~~g~-~~~iRiS~~~ynt~~di~~l~~~l~~~~ 416 (424)
T PLN02855 379 AQPL--------------HRYLGV-NASARASLYFYNTKEEVDAFIHALKDTI 416 (424)
T ss_pred hHHH--------------HHHhCC-CCeEEEEeccCCCHHHHHHHHHHHHHHH
Confidence 3110 111233 4789999999999999999999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=249.56 Aligned_cols=248 Identities=13% Similarity=0.080 Sum_probs=177.8
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC----cEEEeccHHHH-H-HHHHHhc
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK----HGLCYSSGLGA-V-TAVTHLL 94 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~----~~i~~~~G~~a-l-~~~~~~~ 94 (393)
.+.++ +.|+||+.+++.+.+++.+.+.....+..++ ..+..+++.+++.+|.+ ++|++++|+++ + .++.+++
T Consensus 697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~p-dlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl 775 (1082)
T PLN02672 697 SSLIHMDVDESFLPVPSAVKASIFESFVRQNISESET-DPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV 775 (1082)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCCh-HHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc
Confidence 45667 8899999999888776654322111111122 23677888888877764 38999999998 5 5667889
Q ss_pred CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCC-CCcEEEEecCC-CCcccccC---H
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKP-NTKMVWIENPT-NPLMTVFD---V 162 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~-~~~~v~l~~p~-nptG~~~~---~ 162 (393)
++||.|+++.|+|+ .|...++..|++++.++++ |++++++++.+ +.++|++++|| ||||.+++ +
T Consensus 776 ~pGD~VLVp~PtY~----~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeL 851 (1082)
T PLN02672 776 QEGGTLCFPAGSNG----TYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEI 851 (1082)
T ss_pred CCCCEEEEeCCChH----HHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHH
Confidence 99999999999998 4788889999999999874 56889988865 35689999997 99999998 6
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccC-C-----CC-----C------cCcEEEEcccccccCCCCceEEEEEecChHH
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQK-S-----LP-----W------GVDIVLYSLTKYMNGHSDVVMGATVTNDDSL 225 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~-~-----~~-----~------~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~ 225 (393)
++|.++|+++ +++||+||+|....+.. + +. . .+.++++||||.+ +++|+|+||++++++++
T Consensus 852 e~Llela~k~-di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylIap~~eL 929 (1082)
T PLN02672 852 EEILSVCAKY-GARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLALNDSVL 929 (1082)
T ss_pred HHHHHHHHHc-CCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEEeCCHHH
Confidence 6778888999 99999999998654421 1 10 0 1468999999999 69999999999976678
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 226 QARLKFLQNSMGVVP-SPFDCWLVTRGL--------KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
++.++.......... +...+..+.... +.+...++.+.++++.+.+.|+.+
T Consensus 930 i~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 930 IDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred HHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 888876543222211 111222222111 113334555677888888998875
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=232.51 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=160.8
Q ss_pred CchHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHHHhc-CCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVTHLL-SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..+||+++|+++ |. ++.|++|+|+++ + .++..++ .+||.|+++.|+|+ .|...++..|.+++.
T Consensus 167 s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~----~y~~~~~~~g~~~v~ 242 (534)
T PLN02231 167 SQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYP----LYSASIALHGGTLVP 242 (534)
T ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCCh----hHHHHHHHcCCEEEE
Confidence 467889999999986 32 278999999886 7 5566666 47999999999998 477778889999999
Q ss_pred eCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc--
Q psy12791 128 VDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ-- 189 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~-- 189 (393)
++++ |++++++.+++ ++++++++|||||||.+++ +++|+++|+++ +++||+||+|....+.
T Consensus 243 ~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~-~l~lI~DEvY~~l~y~~~ 321 (534)
T PLN02231 243 YYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQE-GLVLLADEVYQENVYVPD 321 (534)
T ss_pred EecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC
Confidence 8764 67888887754 6899999999999999998 67888899999 9999999999987652
Q ss_pred CCC-C---------C----cCcEEEEcccccccCCCCceEEEEEec--ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Q psy12791 190 KSL-P---------W----GVDIVLYSLTKYMNGHSDVVMGATVTN--DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 190 ~~~-~---------~----~~di~~~S~sK~~~G~~G~r~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
.+. . . ...++++|+||.+.|.+|+|+||+++. ++++.+.+........ +.+...+.++...++
T Consensus 322 ~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~-~s~~~~Q~~~~~~l~ 400 (534)
T PLN02231 322 KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNL-CSNISGQILASLVMS 400 (534)
T ss_pred CCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHhC
Confidence 111 0 0 135889999997657999999999863 4788888866544322 223333333333221
Q ss_pred -------CHH-------HHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 254 -------TLP-------CRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 254 -------~~~-------~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
.+. ..++.+.+++..+.+.|+.++++.
T Consensus 401 ~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 401 PPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 221 124556677788889998776654
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=221.33 Aligned_cols=220 Identities=21% Similarity=0.282 Sum_probs=167.4
Q ss_pred CccccC-CCC-chHHHHHHHHHHHhCC----CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccC
Q psy12791 50 GFEYSR-SNN-PTRRNLERCIASLEEA----KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 50 ~~~y~~-~~~-~~~~~lr~~la~~~~~----~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
.++|++ |+- +....|++++++++|. +++|++|+|+.+ + .+++.++++||+|++.+|.|.+ |....+..
T Consensus 62 ~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~----Y~~~~~ma 137 (420)
T KOG0257|consen 62 TNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDC----YIPQVVMA 137 (420)
T ss_pred hccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchh----hhhHHhhc
Confidence 455655 232 2344455555555553 368999999876 8 7999999999999999999995 67778889
Q ss_pred CcEEEeeCCC-------------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCc
Q psy12791 122 GLEVDFVDLR-------------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLT 185 (393)
Q Consensus 122 g~~v~~~~~~-------------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~ 185 (393)
|.+.+.++.. |.++++.++.++||+|++|+||||||.+.+ +++|+++|++| |.++|.||+|..
T Consensus 138 G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~-~~lvisDevYe~ 216 (420)
T KOG0257|consen 138 GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH-GLLVISDEVYEW 216 (420)
T ss_pred CCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEEhhHhHH
Confidence 9998888764 799999999999999999999999999998 66788999999 999999999997
Q ss_pred ccccCC---------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-cCCCCCHHHHHHHHh---cc
Q psy12791 186 AYYQKS---------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-MGVVPSPFDCWLVTR---GL 252 (393)
Q Consensus 186 ~~~~~~---------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 252 (393)
..++.. -.+...+-++|++|++ |+.|+|+||++++ +.+...+...... .-.+.++.+.+.+.. .+
T Consensus 217 ~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~igp-~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~ 294 (420)
T KOG0257|consen 217 LVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIGP-KHLYSALFPVHQNFVFTCPTPIQEASAAAFALEL 294 (420)
T ss_pred HhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeech-HHhhhhHHHHhhccccccCcHHHHHHHHHHhhhh
Confidence 665432 1234679999999999 6999999999995 8888887765543 333444544332211 11
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 253 --------KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 253 --------~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.........+.+++..+.+.|.++
T Consensus 295 ~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l 326 (420)
T KOG0257|consen 295 ACLQPGGSYFITELVKEYKEKRDILAKALEEL 326 (420)
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112235666778889999999876
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=225.70 Aligned_cols=315 Identities=17% Similarity=0.157 Sum_probs=215.1
Q ss_pred CCCCC-CCCCCCCccC--CeeeeCCCCCCCC-Ccccc----CCC-CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCVIPPIILS--TTFKQNTPGQPPQ-GFEYS----RSN-NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~--~~~~~~~~~~~~~-~~~y~----~~~-~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~ 91 (393)
.+++| +++ +|++++ +.+.+...+.+.. ...++ .++ .+...+++++++++++.++.+++++|++++ .++.
T Consensus 16 ~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~ 94 (360)
T TIGR00858 16 RRLLNFSSN-DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVIS 94 (360)
T ss_pred ceEEecccC-CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHH
Confidence 35677 666 677644 5555544332211 11111 122 256788999999999988999999998886 6666
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC----CCcEEEEecCCCCcccccCHHHHHH
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP----NTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
.++++||+|++++|+|.. +...++..|++++.++..|++++++.+++ ++++|++++++|+||...++++|.+
T Consensus 95 ~~~~~gd~v~~~~~~~~~----~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~ 170 (360)
T TIGR00858 95 ALVGKGDLILSDALNHAS----LIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVA 170 (360)
T ss_pred HhCCCCCEEEEEccccHH----HHHHHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHH
Confidence 778999999999999985 45556778999998888888888888753 4788999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccCC---------C-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQKS---------L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-- 235 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~~---------~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-- 235 (393)
+|+++ |+++|+||+|..+.+... . ..+++++++|+||++ |++| ||++++ +++.+.+......
T Consensus 171 l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~g---G~~~~~-~~~~~~~~~~~~~~~ 244 (360)
T TIGR00858 171 LAERY-GAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKAL-GSYG---AYVAGS-QALIDYLINRARTLI 244 (360)
T ss_pred HHHHc-CcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhh-hccC---cEEEcC-HHHHHHHHHhCccce
Confidence 99999 999999999986543211 1 136789999999999 5654 899987 7887777543222
Q ss_pred cCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 236 MGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
.+...++.....+...+ +.....+++..++.+.+.+.|++++ +. +. + ..+.++++.++
T Consensus 245 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~-~----------------~~~~~~~~~~~ 305 (360)
T TIGR00858 245 FSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG-FT-LM-P----------------SCTPIVPVIIG 305 (360)
T ss_pred ecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-Cc-cC-C----------------CCCCEEEEEeC
Confidence 12233444333222222 2233456667777888888887643 21 11 1 12568888884
Q ss_pred CCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 313 GGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.......+.+.+...++.+..+..... + ..++++|+|++..+++++++.+.++|
T Consensus 306 -~~~~~~~~~~~l~~~gI~v~~~~~~~~---~-----------------~~~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 306 -DNASALALAEELQQQGIFVGAIRPPTV---P-----------------AGTSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred -CHHHHHHHHHHHHHCCeeEeeeCCCCC---C-----------------CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence 434455666666555555544322100 0 01468999999999998888887776
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=225.13 Aligned_cols=298 Identities=18% Similarity=0.198 Sum_probs=207.1
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
..+++|+.+|+++|.+ +++++++|+++ + .++.++ +++||+|++++++|++++..+...++..|++++.++.+
T Consensus 63 ~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~ 142 (403)
T TIGR01979 63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD 142 (403)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC
Confidence 4668999999999986 57888888776 6 444443 57899999999999987777777788899999998764
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++|+||||.++|+++|.++|+++ |+++++|++|+.+.....+ ..++|+++.|+||
T Consensus 143 ~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~-~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K 221 (403)
T TIGR01979 143 DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQV-GAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHK 221 (403)
T ss_pred CCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHc-CCEEEEEchhhcCccccCccccCCCEEEEeccc
Confidence 78999999998999999999999999999999999999999 9999999999876543222 2578999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhccC-----CHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN---------------------SMGVVPSPFDCWLVTRGLK-----TLPCRL 259 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~-----~~~~~~ 259 (393)
++ |++| +|+++.+ +++.+.++.... ...+..+......+...++ ......
T Consensus 222 ~~-gp~G--~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~ 297 (403)
T TIGR01979 222 MY-GPTG--IGVLYGK-EELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIE 297 (403)
T ss_pred cc-CCCC--ceEEEEc-hHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHH
Confidence 88 7888 9999987 676665531110 0001122222222222222 123344
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
++..+..+.+.+.|+.+++++ +..|.-+ ...++++.|.+++ .....+.+.|...++.++.|..++
T Consensus 298 ~~~~~l~~~l~~~l~~~~g~~-~~~~~~~------------~~~~~~v~~~~~~--~~~~~~~~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 298 AHEHELTAYALERLGEIPGLR-IYGPRDA------------EDRGGIISFNVEG--VHPHDVGTILDEEGIAVRSGHHCA 362 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCEE-EeCCCCc------------cccCceEEEEeCC--cCHHHHHHHHhhCCEEEcchhhhh
Confidence 555556666777777666654 3222200 0125788888853 123345556666566666655432
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
. +. ....| .++++|+|++.++++++++.+.++|+++.+
T Consensus 363 ~---~~-----------~~~~~-~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 363 Q---PL-----------MRRFG-VPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred H---HH-----------HHHhC-CCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 1 00 00112 157999999999999999999999987653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=224.24 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=164.0
Q ss_pred CCCC-chHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHHHhc-CCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 55 RSNN-PTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVTHLL-SAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 55 ~~~~-~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
.|++ .+..+||+++|+++ |. +++|++|+|+++ + .++.+++ ++||.|++++|+|+. |...++..|.
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~----y~~~~~~~g~ 177 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL----YSATISLLGG 177 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc----HHHHHHHcCC
Confidence 3443 46689999999987 53 268999999886 6 6666776 699999999999995 7777888999
Q ss_pred EEEeeCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccc
Q psy12791 124 EVDFVDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAY 187 (393)
Q Consensus 124 ~v~~~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~ 187 (393)
+++.++++ |++++++.+++ +++++++++||||||.+++ +++|.++|+++ +++||+||+|..+.
T Consensus 178 ~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~DE~Y~~l~ 256 (407)
T PLN02368 178 TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLGDEVYQQNI 256 (407)
T ss_pred EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccccccc
Confidence 99998763 67889888763 6899999999999999998 66777888999 99999999999876
Q ss_pred ccC--CC-C--------------CcCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 188 YQK--SL-P--------------WGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 188 ~~~--~~-~--------------~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
+.. +. . .+..++++||||.++|++|+|+||+++ .++++++.+...... ..+.+...+.++
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~aa 335 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIFM 335 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHHH
Confidence 422 11 1 125699999999985599999999995 237888888776432 223444444444
Q ss_pred HhccCC-----------H---HHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 249 TRGLKT-----------L---PCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 249 ~~~~~~-----------~---~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
...+.. . ...++.+.+++..+.+.|++++++.
T Consensus 336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~ 381 (407)
T PLN02368 336 GLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVV 381 (407)
T ss_pred HHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 443321 1 1234556677778888998877654
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=222.52 Aligned_cols=311 Identities=15% Similarity=0.139 Sum_probs=211.5
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCC-CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC-CCCe
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQ-PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS-AGDH 99 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~-~gd~ 99 (393)
.++ ++|.+|. |++.+.+++... ... ...+++|...+||+++|++++.+..+++++|++++ .++..++. +||+
T Consensus 7 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~ 82 (353)
T PLN02721 7 VVDLRSDTVTK-PTDAMRAAMANAEVDD---DVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSE 82 (353)
T ss_pred hhhhhcccccC-CCHHHHHHHHhccCCC---cccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCe
Confidence 446 7888886 666666665432 111 11234577899999999999998889999999885 66666676 9999
Q ss_pred EEEcCCCccchHHHHHH--hcccCCcEEEeeCCC-----CHHHHHhhcC-------CCCcEEEEec-CCCCcccccC---
Q psy12791 100 IISGDDVYGGTYRYFAQ--VAPKIGLEVDFVDLR-----KIENLIKYIK-------PNTKMVWIEN-PTNPLMTVFD--- 161 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~--~~~~~g~~v~~~~~~-----d~~~l~~~l~-------~~~~~v~l~~-p~nptG~~~~--- 161 (393)
|++++|+|.+. +.. .+...|++++.++.+ |++++++.++ +++++|++++ +|||||.++|
T Consensus 83 Vl~~~~~~~~~---~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~ 159 (353)
T PLN02721 83 VILGDNSHIHL---YENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY 159 (353)
T ss_pred EEEcCccceeh---hcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence 99999998652 332 456789999988764 7899999887 5789999977 5789999988
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccc---cCC---CCCcCcEEEEcccccccCCCCceEEE-EEecChHHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYY---QKS---LPWGVDIVLYSLTKYMNGHSDVVMGA-TVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~---~~~---~~~~~di~~~S~sK~~~G~~G~r~G~-~~~~~~~~~~~~~~~~~ 234 (393)
+++|.++|+++ |+++++|++|..+.. ..+ ...+.|.++.|+||++++ + +|+ ++.+ +++++.+.....
T Consensus 160 l~~l~~l~~~~-g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-~---~G~~~~~~-~~~~~~~~~~~~ 233 (353)
T PLN02721 160 TDKVGELAKRH-GLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA-P---VGSVIVGS-KSFIRKAKRLRK 233 (353)
T ss_pred HHHHHHHHHHc-CCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCC-c---eeeEEecC-HHHHHhHHHHHH
Confidence 67999999999 999999999864321 111 112578888899999953 2 555 5554 888888776655
Q ss_pred hcCCCCCH--HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcce-EeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSP--FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKG-VLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
..+..... ..+......++....++++..++.+.+.+.|+.++++.. +..+ .++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~~~~~~~~~ 296 (353)
T PLN02721 234 TLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAV-----------------ETNIVYFDI 296 (353)
T ss_pred hcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCc-----------------cceEEEEEc
Confidence 44433222 222222333333333445555667788888887665431 1111 146788887
Q ss_pred cCC-HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 312 NGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 312 ~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.. ......+.+.|...++.+..+ .+++||+++++..++++++.+.++|+++
T Consensus 297 ~~~~~~~~~~~~~~L~~~gi~v~~~---------------------------~~~~lR~~~~~~~~~~~i~~~~~~l~~~ 349 (353)
T PLN02721 297 TDGSRITAEKLCKSLEEHGVLLMPG---------------------------NSSRIRVVTHHQISDSDVQYTLSCFQQA 349 (353)
T ss_pred cCCccccHHHHHHHHHhCCcEEecC---------------------------CCceEEEEecCcCCHHHHHHHHHHHHHH
Confidence 421 123455666665444444332 1468999999999999999999999875
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 350 ~ 350 (353)
T PLN02721 350 A 350 (353)
T ss_pred h
Confidence 4
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=204.23 Aligned_cols=223 Identities=19% Similarity=0.234 Sum_probs=167.9
Q ss_pred CCchHHHHHHHHHHHhCC-------CcEEEeccHH-HHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 57 NNPTRRNLERCIASLEEA-------KHGLCYSSGL-GAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~-------~~~i~~~~G~-~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
|..+....|+++|++++. .+.+++|+|. +|| .++.++.+||..|++|.|+|+ .|...+.-.|++++.
T Consensus 101 ps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp----~Y~~~a~~~~lEVR~ 176 (447)
T KOG0259|consen 101 PSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFP----LYDTRAIYSGLEVRY 176 (447)
T ss_pred CccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCc----hHHHhhhhcCceeEe
Confidence 567888999999999542 2577788885 569 889999999999999999998 688888899999999
Q ss_pred eCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc-CC---CC
Q psy12791 128 VDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ-KS---LP 193 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~-~~---~~ 193 (393)
+++- |++.+++.++++|.++++.||+||.|.+++ +++|++.|+++ ++++|.||+|...++. .+ +.
T Consensus 177 ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~kl-gi~vIaDEVY~~~vfg~~pfvpmg 255 (447)
T KOG0259|consen 177 YDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKL-GIMVIADEVYGHTVFGDKPFVPMG 255 (447)
T ss_pred ecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHh-CCeEEehhhcceeecCCCCccchh
Confidence 8873 899999999999999999999999999998 88999999999 9999999999986653 22 21
Q ss_pred ----CcCcEEEEcccccccCCCCceEEEEEecChH-------HHHHHHHHHHhcCCCCCHHHHHHHHhccCC-----HHH
Q psy12791 194 ----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-------LQARLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPC 257 (393)
Q Consensus 194 ----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 257 (393)
.-..+.+++.||.+- .||+|+||++..++. +.+.+......... +...-+.++-..+++ +..
T Consensus 256 ~fssiVPVitlggisKrW~-VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~-p~TiiQ~AlP~IL~kTp~efF~k 333 (447)
T KOG0259|consen 256 KFSSIVPVITLGGISKRWI-VPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPG-PATIIQGALPDILEKTPEEFFDK 333 (447)
T ss_pred hccccCceEeecccccccc-cCCceeeeEEEecccccccchHHHHHHHHHHhccCC-ccHhHHHHhHHHHHhChHHHHHH
Confidence 124689999999885 999999999987542 22333333222222 222233333233322 333
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCC
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPG 286 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~ 286 (393)
+...+..++..-.+.|+.+|.+.+...|.
T Consensus 334 ~~~~lk~na~l~y~~Lk~IP~l~cp~kPe 362 (447)
T KOG0259|consen 334 KLSFLKSNADLCYSRLKDIPCLTCPVKPE 362 (447)
T ss_pred HHHHHHhhHHHHHHHHhcCCCcccCcCCC
Confidence 45555677778889999888876544444
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=223.07 Aligned_cols=258 Identities=16% Similarity=0.188 Sum_probs=168.5
Q ss_pred CCCC-chHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-HHHHHhcC-----CCCeEEE-cCCCccchHHHHHHhc
Q psy12791 55 RSNN-PTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-TAVTHLLS-----AGDHIIS-GDDVYGGTYRYFAQVA 118 (393)
Q Consensus 55 ~~~~-~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~~~~~~~-----~gd~vl~-~~~~y~~~~~~~~~~~ 118 (393)
.|++ .+..+||++||+++ | ++ ++|++|+|+++ + .++..+++ +||.|++ .+|+|+. |...+
T Consensus 69 ~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~----y~~~~ 144 (416)
T PRK09440 69 NYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIG----YADAG 144 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchh----hHHHh
Confidence 3444 45789999999987 3 33 78999999887 6 55556664 5899999 6999985 44432
Q ss_pred c------cCCcEEEeeCC------CCHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCcc
Q psy12791 119 P------KIGLEVDFVDL------RKIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 119 ~------~~g~~v~~~~~------~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~ 183 (393)
. ..+..+..++. .|+++++ +.++++++++++||||||.+++ +++|.++|+++ +++||+||+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y 221 (416)
T PRK09440 145 LEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAY 221 (416)
T ss_pred hccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCc
Confidence 2 22223333322 1566665 3557899999999999999999 67788888999 9999999999
Q ss_pred CcccccC------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC--H
Q psy12791 184 LTAYYQK------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT--L 255 (393)
Q Consensus 184 ~~~~~~~------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 255 (393)
..+.... +...++.++++||||. ++||+|+||++++ +++++.+...........+...+.++...++. +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 298 (416)
T PRK09440 222 GPPFPGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIAD-EEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL 298 (416)
T ss_pred cccCCCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH
Confidence 8532211 1113467999999994 5999999999997 88889888777665555566666555555542 2
Q ss_pred HH-----HHHHHHHHHHHHHHHHhhC-CCcc-eEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 256 PC-----RLKEHERGSIEVAKFLESH-PCVK-GVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 256 ~~-----~~~~~~~~~~~l~~~l~~~-~~~~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
.. .+..+.++...+.+.|... +.+. .+..|. .+.++|+.++........+.+.+...
T Consensus 299 ~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~----------------gg~fiw~~~~~~~~~~~~~~~~l~~~ 362 (416)
T PRK09440 299 LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPE----------------GAIFLWLWFKDLPITTEELYQRLKAR 362 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCC----------------CceEEEEECCCCCCCHHHHHHHHHHC
Confidence 11 1233345556666777643 2221 122222 24678998853111234455555555
Q ss_pred ccccccCCcc
Q psy12791 329 RCAESLGGIE 338 (393)
Q Consensus 329 ~~~~~~g~~~ 338 (393)
++.+.+|..+
T Consensus 363 gV~v~pg~~F 372 (416)
T PRK09440 363 GVLVVPGHYF 372 (416)
T ss_pred CEEEechHhh
Confidence 6667666554
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=224.24 Aligned_cols=299 Identities=20% Similarity=0.226 Sum_probs=203.4
Q ss_pred chHHHHHHHHHHHhCCC--cEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+...++|+.+++++|.+ +.|++++|++ ++ .++.+++++||+|+++.++|+++...+...++..|.+++.++.+
T Consensus 44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 123 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG 123 (376)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence 56778999999999976 3677776655 57 66777889999999999999887666666777789999988764
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccccccc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMN 208 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~~ 208 (393)
|++++++.+++++++|++++|+||||.++|+++|.++|+++ |+++|+|++++.+.....+ ..++|+++.|++||++
T Consensus 124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~-~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~ 202 (376)
T TIGR01977 124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQEN-GIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL 202 (376)
T ss_pred CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHc-CCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence 78999999988899999999999999999999999999999 9999999999876543222 2579999999999998
Q ss_pred CCCCceEEEEEecChHHHHHHHHH--H--------------HhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHH
Q psy12791 209 GHSDVVMGATVTNDDSLQARLKFL--Q--------------NSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSI 267 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 267 (393)
|++| .|+++.++...+..+... . ....+..+......+...++ ..+..+++..+..+
T Consensus 203 ~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~ 280 (376)
T TIGR01977 203 GPQG--TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTE 280 (376)
T ss_pred CCCC--ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7888 676666534321111100 0 00001111111111222222 22334555666777
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc-ccccccCCccccccCccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF-RCAESLGGIESLADLPAE 346 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~ 346 (393)
.+.+.|++.+++. +..+.-+ ....++++|.+++ ...+.+.+.|... ++.++.|..++....
T Consensus 281 ~~~~~l~~~~~~~-~~~~~~~------------~~~~~~v~~~~~~--~~~~~~~~~L~~~~gi~v~~g~~~~~~~~--- 342 (376)
T TIGR01977 281 KLLNGLREINKVK-IYGPADP------------ANRVGVVSFTVEG--IDSEEVADILDEKFDIATRTGLHCAPLAH--- 342 (376)
T ss_pred HHHHHHhcCCCeE-EeCCCCc------------cccCCeEEEEECC--CCHHHHHHHHhccCCEEEEcccccchHHH---
Confidence 7788887766653 2222100 1124688888853 1234455555443 566655544332211
Q ss_pred ccCCCCChhhHhhcC-CCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 347 MTHKSIPKETRDALG-ITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g-~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..+| ...+.||+|++..+++++++.+.++|++
T Consensus 343 -----------~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 343 -----------KTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred -----------HHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1112 2367999999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=219.63 Aligned_cols=285 Identities=14% Similarity=0.100 Sum_probs=196.8
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+||+++|+++|.++.+++++|++++ .++.+++++||+|++++++|++. ...++..+.+...++..|++++
T Consensus 82 ~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~----~~~~~~~~~~~~~~~~~d~~~l 157 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASI----IDGVRLCKAKRYRYANNDMADL 157 (393)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHH----HHHHHhcCCceEEeCCCCHHHH
Confidence 345689999999999999999999998887 66677889999999999999863 3334555555555666688888
Q ss_pred HhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCCCcCcEEEE
Q psy12791 137 IKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLPWGVDIVLY 201 (393)
Q Consensus 137 ~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~~~~di~~~ 201 (393)
++.+.+ ++++|++++++||||.+.|+++|.++|+++ |+++|+||+|+.+.... ....+.|++++
T Consensus 158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~-~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~ 236 (393)
T TIGR01822 158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKY-DALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITG 236 (393)
T ss_pred HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHc-CCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEE
Confidence 887764 688999999999999999999999999999 99999999997543211 11125789999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
|+||+++| .|+||++++ +++.+.++.... .+++...+.....+...+ +..+..+++..++.+.+.+.|+..
T Consensus 237 s~sK~l~g---~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 237 TLGKALGG---ASGGFTTAR-KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred EChHHhhC---CCcEEEEeC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999843 479999987 888887765322 122333333322222222 223345566667777777777653
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
++. +. +. .+.++.+.+. +......+.+.|...++.+. +..+...
T Consensus 313 -g~~-~~-~~----------------~~~~~~i~~~-~~~~~~~l~~~L~~~gI~v~-~~~~~~~--------------- 356 (393)
T TIGR01822 313 -GFD-IK-PA----------------DHPIIPVMLY-DAVLAQRFARRLLEEGIYVT-GFFYPVV--------------- 356 (393)
T ss_pred -CCC-CC-CC----------------CCCEEEEEeC-CHHHHHHHHHHHHHCCeeEe-eeCCCCC---------------
Confidence 221 11 10 1346666663 43455667666654455443 2211100
Q ss_pred HhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 357 ~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......+|+|++..+++++++.+.++|+++.
T Consensus 357 ----~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 357 ----PKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred ----CCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 0013579999999999999999999998764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=218.76 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=150.1
Q ss_pred CCchHHHHHHHHHHHhC-------CCcEEE--eccHHH-HH-HHH---HHhcCCCCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 57 NNPTRRNLERCIASLEE-------AKHGLC--YSSGLG-AV-TAV---THLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~-------~~~~i~--~~~G~~-al-~~~---~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
+..+..+||+++|+++. .++.|+ .+.|++ ++ .++ ..++++||+|++++|+|+. |...++..|
T Consensus 70 ~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~----~~~~~~~~G 145 (404)
T PTZ00376 70 PIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPN----HVNIFKSAG 145 (404)
T ss_pred CCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchh----HHHHHHHcC
Confidence 35688899999999752 124666 355654 45 332 3567999999999999984 788889999
Q ss_pred cEEEeeCC---C----CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 123 LEVDFVDL---R----KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 123 ~~v~~~~~---~----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
++++.+++ + |++.+++.+. ++++++++++||||||.+++ +++|.++|++| +++||+||+|..+.+.
T Consensus 146 ~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~ 224 (404)
T PTZ00376 146 LNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAYQGFASG 224 (404)
T ss_pred CceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhhcCccCC
Confidence 99999987 2 6788888774 34677778999999999998 66778889999 9999999999876653
Q ss_pred C------CC-----CCcCcEEEEcccccccCCCCceEEEEE--ecChHHHHHH----HHHHHhcCCCCCHHHHHHHHhcc
Q psy12791 190 K------SL-----PWGVDIVLYSLTKYMNGHSDVVMGATV--TNDDSLQARL----KFLQNSMGVVPSPFDCWLVTRGL 252 (393)
Q Consensus 190 ~------~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
. +. ...+.++++||||.+ |++|+|+||++ ..++++.+.+ .........+.+...+..+...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l 303 (404)
T PTZ00376 225 DLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRIL 303 (404)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHh
Confidence 1 01 112569999999999 69999999983 2337655544 22222223334445555555444
Q ss_pred CCH----------HHHHHHHHHHHHHHHHHHhhC
Q psy12791 253 KTL----------PCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 253 ~~~----------~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+.- ...++++.+++..+.+.|+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 337 (404)
T PTZ00376 304 SDPELRAEWLSELKEMSGRIQNMRQLLYDELKAL 337 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 431 122344556677777777754
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=216.76 Aligned_cols=307 Identities=20% Similarity=0.108 Sum_probs=208.3
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCC
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDV 106 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~ 106 (393)
+.+||+++++.+.+++.+.......| ++++...++++.+++++|.++.+++++|++++ .++..++++||.|++++++
T Consensus 3 ~~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~ 80 (338)
T cd06502 3 RSDTVTGPTPEMLEAMAAANVGDDVY--GEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETA 80 (338)
T ss_pred ccccCCCCCHHHHHHHHhcccCCccc--CCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCc
Confidence 57899999998888775532211122 35678999999999999955788888888777 7777788999999999999
Q ss_pred ccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCC-------CCcEEEEecCCCCcccccC---HHHHHHHHHhC
Q psy12791 107 YGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKP-------NTKMVWIENPTNPLMTVFD---VKAISAVVKQH 172 (393)
Q Consensus 107 y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~-------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~ 172 (393)
|.+.+.. ...++..|++++.++.+ |++++++++.+ ++++|++++|||| |.+++ +++|.++|+++
T Consensus 81 ~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~ 158 (338)
T cd06502 81 HIYTDEA-GAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKEN 158 (338)
T ss_pred ceeeecC-CcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHc
Confidence 8753211 01234579999998874 78999998864 6899999999998 55545 67789999999
Q ss_pred CCcEEEEeCccCcccc---cCC---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC--CCHHH
Q psy12791 173 PDILLVLDNTFLTAYY---QKS---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV--PSPFD 244 (393)
Q Consensus 173 ~~~~livDea~~~~~~---~~~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 244 (393)
|+++++||+|..+.. ..+ ...+.|+++.|+||++ |.+| +++++.+ +++++.++.....++.. .++..
T Consensus 159 -~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~-~~~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd06502 159 -GLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGG-GAPV--GAVVVGN-RDFIARARRRRKQAGGGMRQSGFL 233 (338)
T ss_pred -CCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccC-CCcc--ceEEECC-HHHHHHHHHHHHHhCCChhhHHHH
Confidence 999999999854321 111 1135789999999999 5776 4445555 88888887665444322 23444
Q ss_pred HHHHHhccCC--HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 245 CWLVTRGLKT--LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 245 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
+..+...++. ...+.++..++.+++.+.|+.++. . + .+ ...+++.+.+++.......+.
T Consensus 234 ~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~-~~----------------~~~~~~~v~~~~~~~~~~~l~ 294 (338)
T cd06502 234 AAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG-L-E-SE----------------VQTNIVLLDPVEANAVFVELS 294 (338)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC-C-c-cc----------------ccCCeEEEecCCccHHHHHHH
Confidence 4444444443 444566777777888888876543 1 1 11 124666666643334444555
Q ss_pred HhcC---ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 323 ESLL---IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 323 ~~l~---~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+.+. ..++.+.. ...++||++++..+++++++.+.+++++
T Consensus 295 ~~l~~~~~~gi~~~~---------------------------~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 295 KEAIERRGEGVLFYA---------------------------WGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHhhhCCEEEEe---------------------------cCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 4432 11211110 0137899999999999999998888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=220.26 Aligned_cols=304 Identities=17% Similarity=0.162 Sum_probs=201.4
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...+++|+.+|+++|.+ ++|++++|+++ + .++..++ ++||.|+++..+|++... +...++..|++++.++.+
T Consensus 43 ~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~-~~~~~~~~g~~v~~v~~~ 121 (381)
T PRK02948 43 SLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHS-YFQSLESQGYTVTEIPVD 121 (381)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHH-HHHHHHhCCCEEEEEeeC
Confidence 34678999999999975 78888888665 5 4554543 578999999988876443 344567789999988864
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC-CCCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS-LPWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~-~~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++|+||||.++|+++|.++|+++ |+++++|+++..+..... ...++|+++.|+||
T Consensus 122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~-~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K 200 (381)
T PRK02948 122 KSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKY-NVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHK 200 (381)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHc-CCEEEEEChhhccccccCcccCCCCEEEecHHh
Confidence 78999999988899999999999999999999999999999 999999998876543222 23578999999999
Q ss_pred cccCCCCceEEEEEecChHH-HHHHHH----HHHhcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 206 YMNGHSDVVMGATVTNDDSL-QARLKF----LQNSMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
++ |++| +|+++.+ +++ +..+.. ......+..+......+...+ +.....+++..+.+..+.+.|+++
T Consensus 201 ~~-gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 276 (381)
T PRK02948 201 IY-GPKG--VGAVYIN-PQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL 276 (381)
T ss_pred cC-CCCc--EEEEEEc-CCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98 7999 8999887 433 111110 000111222222222222222 334445566667777777878765
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
+. . +...+-.+ .....++.|.+++ . ..+.+...|...++.++.|..|+..-.+ +...
T Consensus 277 ~~-~-v~~~~~~~-----------~~~~~i~~~~~~~-~-~~~~~~~~l~~~gI~v~~g~~c~~~~~~--------p~~~ 333 (381)
T PRK02948 277 PL-P-IEVEGHST-----------SCLPHIIGVTIKG-I-EGQYTMLECNRRGIAISTGSACQVGKQE--------PSKT 333 (381)
T ss_pred CC-C-EEEeCCCc-----------cCcCCEEEEEeCC-C-CHHHHHHhcccCCEEEEchHhcCCCCCC--------CCHH
Confidence 31 1 11111000 1123567777753 1 1244445566667777776654321111 1122
Q ss_pred HhhcCC----CCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 357 RDALGI----TDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 357 ~~~~g~----~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++|. ..++||+|++.++++++++.+.++|+++.
T Consensus 334 ~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~ 372 (381)
T PRK02948 334 MLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIG 372 (381)
T ss_pred HHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 222332 14799999999999999999999998764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=221.23 Aligned_cols=315 Identities=16% Similarity=0.112 Sum_probs=209.9
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCC-----ccccCCCC-chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc--CCC
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQG-----FEYSRSNN-PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL--SAG 97 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~-----~~y~~~~~-~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~--~~g 97 (393)
|-+-+|+.+++.+.++..+.+... .....|+. +...+|+++||+++|.+++++++||++++ .++..+. .+|
T Consensus 53 sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g 132 (410)
T PRK13392 53 SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPG 132 (410)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCC
Confidence 556788888888776654432110 01112333 35789999999999988999999999886 5555443 478
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHP 173 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 173 (393)
|.|+++...|.+. ...++..|.++..++.+|.+++++.+. +++++|++++|+||||.+.|+++|.++|+++
T Consensus 133 ~~vi~~~~~h~s~----~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~- 207 (410)
T PRK13392 133 CVILSDALNHASM----IEGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRY- 207 (410)
T ss_pred CEEEEehhhhHHH----HHHHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHc-
Confidence 9888877677653 234567788888887766666665553 4689999999999999999999999999999
Q ss_pred CcEEEEeCccCccccc-C--------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCH
Q psy12791 174 DILLVLDNTFLTAYYQ-K--------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSP 242 (393)
Q Consensus 174 ~~~livDea~~~~~~~-~--------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~ 242 (393)
++++|+||+|+.+.+. . ......|++++|+||++ |.+| ||++++ +++++.++..... ++...++
T Consensus 208 ~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~-g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~ 282 (410)
T PRK13392 208 NALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF-GCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPP 282 (410)
T ss_pred CCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhh-hccc---chhhcC-HHHHHHHHHhCcchhccCcCCH
Confidence 9999999999954421 1 11123579999999999 5665 899886 8888877755432 2333344
Q ss_pred HHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 243 FDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 243 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
..+..+...+ +......+++.++.+.+.+.|+.. ++. + .+. .++++.+.+ ++.....
T Consensus 283 ~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~~~~~~i~~-~~~~~~~ 342 (410)
T PRK13392 283 AVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIP-V-MPS----------------PSHIVPVMV-GDPTLCK 342 (410)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC-C-CCC----------------CCCEEEEEe-CCHHHHH
Confidence 4443333333 333344566677777888888754 221 1 111 145665666 3444455
Q ss_pred HHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 320 IFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 320 ~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+.+.|. ..++.+..+.. |. . .....++|+|++..+++++++.+.++|+++.
T Consensus 343 ~~~~~L~~~~GI~v~~~~~------p~------~--------~~~~~~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 343 AISDRLMSEHGIYIQPINY------PT------V--------PRGTERLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred HHHHHHHHhCCEEEeeeCC------CC------C--------CCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6666653 33444433211 10 0 0114689999999999999999999998764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=215.75 Aligned_cols=312 Identities=12% Similarity=0.093 Sum_probs=205.1
Q ss_pred CCCCCCCccCCeeeeCCCCCCCC-Cccc-------c---CCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQ-GFEY-------S---RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL 94 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~-~~~y-------~---~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~ 94 (393)
|-|.||+...-.+.++..+.+.. ...| + .-..+...++++.+|+++|.++.+++++|++++ .++.+++
T Consensus 8 ~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~ 87 (370)
T TIGR02539 8 SINLNPLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALC 87 (370)
T ss_pred ccccChhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhh
Confidence 55788887766665544332100 0000 0 111246788999999999999877777777777 7777888
Q ss_pred CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCC-------CCcEEEEecCCCCccccc
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKP-------NTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~-------~~~~v~l~~p~nptG~~~ 160 (393)
++||.|+++.+.|.+. + ..++..|++++.++.+ |++++++.+.+ ++++|++++|+||||.+.
T Consensus 88 ~~gd~Vl~~~~~h~s~---~-~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~ 163 (370)
T TIGR02539 88 KEGDWVVLDGLAHYTS---Y-VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP 163 (370)
T ss_pred CCCCEEEECCcccHHH---H-HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc
Confidence 9999999999998763 3 3467889999999875 78999888752 678999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccC-CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC--
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQK-SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG-- 237 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~-- 237 (393)
|+++|.++|+++ |+++++|++|+.+.... ....+.|++++|+||++ |. |.|+||++++ +++++.++....++.
T Consensus 164 ~l~~i~~la~~~-~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~-~~-~g~~G~l~~~-~~~i~~l~~~~~~~~~~ 239 (370)
T TIGR02539 164 DAGKVAKVCREK-GVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSM-AA-SGPCGVLGMS-EEWEDIVLRKSRYSPVK 239 (370)
T ss_pred CHHHHHHHHHHc-CCeEEEECccccCCcCCCHHHcCCCEEEeeCcccc-cC-CCCEEEEEEC-HHHHhhhcccccCCccc
Confidence 999999999999 99999999999864321 22346899999999999 44 4479999997 888888765543221
Q ss_pred ------CCCCHHHHHHHHhccCCHHH---HHHHHHHHHHHHHHHHhhCCCcceE-eCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 238 ------VVPSPFDCWLVTRGLKTLPC---RLKEHERGSIEVAKFLESHPCVKGV-LHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 238 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~v-~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
..........+...++.... ++.+..++.+++.+.|++.+ +..+ ..|. ..+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~s----------------~t~~v 302 (370)
T TIGR02539 240 EVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIG-FIQLGQKPK----------------EHDLV 302 (370)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cEEEccCCC----------------cCceE
Confidence 11111112122222222111 22333444567788887653 2211 1111 24667
Q ss_pred EEEEcCC-------HHHHHHHHHhcCccccc-cccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 308 SFYVNGG-------AEETRIFLESLLIFRCA-ESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 308 ~~~~~~~-------~~~~~~~~~~l~~~~~~-~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
.+.++.- ......+.+.|...++. +.+ + .++++|+|+. ..++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~--------------------------~-~~~~iRis~~-~~t~e~ 354 (370)
T TIGR02539 303 KFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS--------------------------G-QTKYFKLSVY-GLTKEQ 354 (370)
T ss_pred EEECCchhHHhhhhccccHHHHHHHHhCCCccccC--------------------------C-cceEEEEEec-CCCHHH
Confidence 6766321 11234566666554442 111 1 1469999984 568888
Q ss_pred HHHHHHHHHHhh
Q psy12791 380 IADLDQALRKAC 391 (393)
Q Consensus 380 i~~l~~al~~~~ 391 (393)
++.+.++|+++.
T Consensus 355 i~~l~~~L~~~~ 366 (370)
T TIGR02539 355 VEYVVDSFEEIV 366 (370)
T ss_pred HHHHHHHHHHHH
Confidence 888888887664
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=218.23 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=149.8
Q ss_pred CCchHHHHHHHHHHHhC-------CCcEE--EeccHHHH-H-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 57 NNPTRRNLERCIASLEE-------AKHGL--CYSSGLGA-V-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~-------~~~~i--~~~~G~~a-l-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
+..+..+||+++|+++. .+++| ++|+|+++ + .++..+ +++||.|++++|+|+. +...++..|+
T Consensus 67 ~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~----~~~~~~~~g~ 142 (396)
T PRK09257 67 PIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPN----HRAIFEAAGL 142 (396)
T ss_pred CCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCccc----HHHHHHHcCC
Confidence 34678899999999852 12455 88999775 6 444333 5899999999999985 7788889999
Q ss_pred EEEeeCC---C----CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 EVDFVDL---R----KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 ~v~~~~~---~----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+++.++. + |++.+++.+. ++++++++++||||||.+++ +++|+++|+++ ++++|+||+|..+.+..
T Consensus 143 ~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~ 221 (396)
T PRK09257 143 EVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGFGDGL 221 (396)
T ss_pred cEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccch
Confidence 9999885 1 6788887765 33566666999999999998 67788889999 99999999998765320
Q ss_pred -----C---C--CCcCcEEEEcccccccCCCCceEEEEEe--cChHHH----HHHHHHHHhcCCCCCHHHHHHHHhccCC
Q psy12791 191 -----S---L--PWGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQ----ARLKFLQNSMGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 191 -----~---~--~~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
+ + .....++++||||.+ |++|+|+||+++ ++++.. +.++..........+...+..+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 300 (396)
T PRK09257 222 EEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILND 300 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCC
Confidence 1 0 113569999999999 699999999984 334433 3333322222233345444444443332
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 255 ----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 255 ----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+...++.+.++++.+.+.|+++
T Consensus 301 ~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~ 332 (396)
T PRK09257 301 PELRAEWEAELEEMRERIKAMRQLLVEALKAK 332 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2224455566777777888764
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=216.88 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHHhCCC--cEEEeccHHH-HH-HHHHHhcC---CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSSGLG-AV-TAVTHLLS---AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~G~~-al-~~~~~~~~---~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
....++|+.+++++|.+ +.+++++|++ ++ .++.++.. +||+|++++++|++.+..+...++..|++++.++.+
T Consensus 43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (373)
T cd06453 43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence 34568999999999976 4676666665 57 66667766 899999999999886655666677889999999875
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++|+||||.+.|+++|.++|+++ |+++++|++++.+....+. ..+.|+++.|++|
T Consensus 123 ~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 201 (373)
T cd06453 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEA-GVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHK 201 (373)
T ss_pred CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHc-CCEEEEEhhhhcCceeeeccccCCCEEEecccc
Confidence 78999999988999999999999999999999999999999 9999999999865543222 3578999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHhc---------------------CCCCCHHHHHHHHhcc-----CCHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSM---------------------GVVPSPFDCWLVTRGL-----KTLPCRL 259 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~-----~~~~~~~ 259 (393)
+++ ++| +|+++++ +++++.++...... ...+.......+...+ ..+....
T Consensus 202 ~~~-~~g--~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~ 277 (373)
T cd06453 202 MLG-PTG--IGVLYGK-EELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIA 277 (373)
T ss_pred ccC-CCC--cEEEEEc-hHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 995 466 8999997 77777665322100 0111111111111111 2344455
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
++..+..+.+.+.|+.++++..+ .+. ...++++.|.+++ .....+.+.+...++.+..|..++
T Consensus 278 ~~~~~~~~~l~~~l~~~~~~~~~-~~~--------------~~~~~~~~~~~~~--~~~~~i~~~l~~~gi~i~~g~~~~ 340 (373)
T cd06453 278 AHEHELTAYALERLSEIPGVRVY-GDA--------------EDRAGVVSFNLEG--IHPHDVATILDQYGIAVRAGHHCA 340 (373)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEe-CCc--------------cccCCeEEEEECC--cCHHHHHHHHHHCCEEeccCccch
Confidence 55566677777888777665432 111 1124678888853 123344445444455555443321
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.. . ...+| .+++||+|++..+++++++.+.++|
T Consensus 341 ~~---~-----------~~~~~-~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 341 QP---L-----------MRRLG-VPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred hH---H-----------HHHhC-CCCeEEEEecCCCCHHHHHHHHhhC
Confidence 10 0 00112 2579999999999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=213.96 Aligned_cols=315 Identities=20% Similarity=0.225 Sum_probs=212.2
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-------cEEEeccHHH-HH-HHHHHhcCCC
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-------HGLCYSSGLG-AV-TAVTHLLSAG 97 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-------~~i~~~~G~~-al-~~~~~~~~~g 97 (393)
+.+.+|+...+.+..+..........+...+.++..++++.++++++.. +.+++++|++ ++ .++..+.++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g 83 (350)
T cd00609 4 SIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPG 83 (350)
T ss_pred CCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCC
Confidence 5677787777666655432101122233335678889999999987632 4566666655 57 6666778889
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CH--HHHHhhcCCCCcEEEEecCCCCcccccCHHHH---HH
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KI--ENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI---SA 167 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~--~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l---~~ 167 (393)
|+|++++++|.+ +...++..|.+++.++.+ +. +.++....+++++|++++|+||||.++|.+++ .+
T Consensus 84 ~~vl~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~ 159 (350)
T cd00609 84 DEVLVPDPTYPG----YEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAE 159 (350)
T ss_pred CEEEEcCCCchh----HHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 999999999986 556677889999988875 22 56666667789999999999999999986555 48
Q ss_pred HHHhCCCcEEEEeCccCcccccC--------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQK--------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~--------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
+|+++ |+++|+|++|+.+.... ....++|++++|++|++ |.+|.++|+++++++++.+.++.........
T Consensus 160 ~~~~~-~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~-~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~ 237 (350)
T cd00609 160 LAKKH-GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSG 237 (350)
T ss_pred HHHhC-CeEEEEecchhhceeCCcccccccCcCccCcEEEEeeccccc-CCcccceEEEecCHHHHHHHHHHHHHhcccC
Confidence 99999 99999999998754321 11246789999999999 5789999999998448888887766654444
Q ss_pred CCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 240 PSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
.+...+..+...++. .....+...++++.+.+.|+..+.... .. ...+.++++.+.+ .
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~----------------~~~g~~~~~~~~~-~ 299 (350)
T cd00609 238 PSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVV-VK----------------PSGGFFLWLDLPE-G 299 (350)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cC----------------CCccEEEEEecCC-C
Confidence 555554444444433 344455566777788888876554321 11 1124667888743 2
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
...+.+.+.+...++.+..++.+.. ..+.++|++++.. +++++.+.++|+
T Consensus 300 ~~~~~~~~~l~~~gi~i~~~~~~~~---------------------~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 300 DDEEFLERLLLEAGVVVRPGSAFGE---------------------GGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred ChHHHHHHHHHhCCEEEeccccccc---------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 2233344444444444443332210 1257999999998 777777777765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=217.27 Aligned_cols=319 Identities=16% Similarity=0.116 Sum_probs=216.2
Q ss_pred CCCCC-CCCCCC-CccCCeeeeCCCCCCCC------CccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCVIPP-IILSTTFKQNTPGQPPQ------GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~~~p-~~~~~~~~~~~~~~~~~------~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~ 92 (393)
.+++| +++.++ +.+++.+.+++.+.+.. .+.+.....+...+++++++++++.++.+++++|++++ .++..
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~ 118 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTA 118 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHH
Confidence 46677 556543 23455566555433211 01111223566889999999999988899999999886 66667
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
++++||+|++++++|+. +...++..|.+++.++..|++++++.+.+ +++++++++++|++|...++++|.++|
T Consensus 119 ~~~~gd~V~~~~~~~~~----~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia 194 (385)
T PRK05958 119 LAGKGDLIVSDKLNHAS----LIDGARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALA 194 (385)
T ss_pred hCCCCCEEEEeCccCHH----HHHHHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHH
Confidence 78999999999999985 44456678999999988889999988864 356777788999999999999999999
Q ss_pred HhCCCcEEEEeCccCccccc-C--------CCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cC
Q psy12791 170 KQHPDILLVLDNTFLTAYYQ-K--------SLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MG 237 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~-~--------~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~ 237 (393)
+++ |+++|+||+|+.+... . .+. ...++++.|+||++ |++| ||++++ +++.+.+...... .+
T Consensus 195 ~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G---g~~~~~-~~~~~~~~~~~~~~~~~ 268 (385)
T PRK05958 195 RRH-GAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSG---AAVLGS-ETLIDYLINRARPFIFT 268 (385)
T ss_pred HHh-CCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCC---cEEEcC-HHHHHHHHHhCccceec
Confidence 999 9999999999765332 0 111 23458999999999 5665 888887 7777776533211 22
Q ss_pred CCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 238 VVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
...++..+..+...++. .....++..++.+.+.+.|++.+ +. +. ...++++++.++ +
T Consensus 269 ~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~~-----------------~~~~~~~~~~~~-~ 328 (385)
T PRK05958 269 TALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG-FQ-LM-----------------DSQSAIQPLIVG-D 328 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CC-cC-----------------CCCCCEEEEEeC-C
Confidence 33445554433333322 23455666677778888887542 11 11 112578888884 4
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.+...++.+..+...+. ...++++|+|++..+++++++.+.++|+++
T Consensus 329 ~~~~~~~~~~l~~~gI~v~~~~~~~~--------------------~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 329 NERALALAAALQEQGFWVGAIRPPTV--------------------PAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHHHHCCceEecccCCCC--------------------CCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 44556677776655555543221100 011468999999999999999988888754
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=214.46 Aligned_cols=302 Identities=18% Similarity=0.161 Sum_probs=201.6
Q ss_pred CC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEE
Q psy12791 25 RS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHII 101 (393)
Q Consensus 25 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl 101 (393)
+| ++|+||. |++...+++.+.... ..+| +++...+|+++||+++|.+..+++++|++++ ..+..++.+||+|+
T Consensus 2 ~~~~~~~~~~-p~~~~~~a~~~~~~~---~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi 77 (333)
T PRK10534 2 IDLRSDTVTR-PSRAMLEAMMAAPVG---DDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYI 77 (333)
T ss_pred cccccccCCC-CCHHHHHHHHhccCC---CcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeE
Confidence 57 8999999 888888877654332 3345 6899999999999999999888888888885 66677789999999
Q ss_pred EcCCCccchHHHHHHh-cccCC-cEEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCcccccCHHHH---
Q psy12791 102 SGDDVYGGTYRYFAQV-APKIG-LEVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPLMTVFDVKAI--- 165 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~-~~~~g-~~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l--- 165 (393)
++.|.|... +... +...+ ++++.++.+ |++++++++.+ ++++|+++||+ ||.++|.++|
T Consensus 78 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i 152 (333)
T PRK10534 78 VGQAAHNYL---YEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQA 152 (333)
T ss_pred EechhhhhH---hcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHH
Confidence 988887522 2211 12333 677766543 68999998865 58999999776 4999996554
Q ss_pred HHHHHhCCCcEEEEeCccCcccc---cCCC---CCcCcEEEEcccccccCCCCceEE-EEEecChHHHHHHHHHHHhcCC
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYY---QKSL---PWGVDIVLYSLTKYMNGHSDVVMG-ATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~---~~~~---~~~~di~~~S~sK~~~G~~G~r~G-~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
.++|+++ ++++++||+|..... .... ....+.++.||||.+ |.+ +| |++++ +++++.++.....++.
T Consensus 153 ~~~~~~~-~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~---~G~~~~~~-~~~i~~~~~~~~~~~~ 226 (333)
T PRK10534 153 WEFTRER-NLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGL-GTP---VGSLLVGN-RDYIKRARRWRKMTGG 226 (333)
T ss_pred HHHHHHc-CCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCC-CCc---ccceEEcC-HHHHHHHHHHHHHhCC
Confidence 5678888 999999999874211 1111 112355566999998 454 56 67775 8999999877765543
Q ss_pred CCC--HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 239 VPS--PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 239 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
..+ ...+..+...++.....+++..++++.+.+.|+++ ++. +..+ .+.++++.+++ .
T Consensus 227 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-----------------~~nfv~~~~~~--~ 285 (333)
T PRK10534 227 GMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREA-GAD-VMRQ-----------------DTNMLFVRVGE--E 285 (333)
T ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCc-cCCC-----------------CceEEEEECCc--h
Confidence 332 22233333344433344555556677888888865 322 2111 25688888842 2
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+.+.+...++.+..| ..+|++...-.+.++++.+.++|+++.
T Consensus 286 ~~~~~~~~l~~~gi~v~~~-----------------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 286 QAAALGEYMRERNVLINAS-----------------------------PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred hHHHHHHHHHHcCeeecCC-----------------------------ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 3445555555545444321 246777765567888888888887654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=222.49 Aligned_cols=191 Identities=21% Similarity=0.253 Sum_probs=137.5
Q ss_pred CCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh------CC-----CcEEEeccHHHH-H-HHHH
Q psy12791 25 RSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE------EA-----KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 25 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~------~~-----~~~i~~~~G~~a-l-~~~~ 91 (393)
++-+...|-.+++.+..+..+.+.. ..|+ +.++..++|+++++.+ +. +++|++|+|+++ + .++.
T Consensus 103 i~l~~g~p~~~~~~~v~e~~~~~~~-~~Y~--~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~ 179 (527)
T PRK09275 103 VSYVRDQLGFDADEFVYELVDGIIG-DNYP--VPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFD 179 (527)
T ss_pred HhhcCCCCCCCCCHHHHHHHHHHhc-CCCC--CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 4423334444555555545444322 2344 3467788999999832 11 138999999876 6 5555
Q ss_pred H-----hcCCCCeEEEcCCCccchHHHHHHhcccC--CcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 92 H-----LLSAGDHIISGDDVYGGTYRYFAQVAPKI--GLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 92 ~-----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~--g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
+ +++|||+|++++|+|+. |...++.. |++++.++.+ |++++++++++++|+|++++||||||
T Consensus 180 aL~~~~ll~pGD~Vlv~~P~y~~----Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG 255 (527)
T PRK09275 180 SLKENGLLKAGDKIALMTPIFTP----YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPS 255 (527)
T ss_pred HHhhhhcCCCCCEEEEeCCChHH----HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcC
Confidence 4 68999999999999984 66655544 5666666542 67889998888999999999999999
Q ss_pred cccC---HHHHHHHHHhC-CCcEEEEeCccCccccc-CCC---CCcCcEEEEcccccccCCCCceEEEEEecCh
Q psy12791 158 TVFD---VKAISAVVKQH-PDILLVLDNTFLTAYYQ-KSL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDD 223 (393)
Q Consensus 158 ~~~~---~~~l~~l~~~~-~~~~livDea~~~~~~~-~~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~ 223 (393)
.+++ +++|+++|+++ ++++||+||+|..+... .++ ...+.+++.||||.+ |++|+|+||++++++
T Consensus 256 ~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 256 VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED 328 (527)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence 9999 66777788543 38999999999986532 111 124679999999999 799999999999854
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=214.69 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=202.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+|+++||+++|.++.+++++|++|+ .++.++..+||.|++..+.|.+. ...++..|++++.++..|++++
T Consensus 98 ~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~----~~~~~~~g~~~~~~~~~d~~~l 173 (407)
T PRK07179 98 DSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSL----WEGVRAAGAQAHPFRHNDVDHL 173 (407)
T ss_pred chHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHH----HHHHHHCCCeEEEecCCCHHHH
Confidence 357889999999999998889999999997 77788888999999999888763 2334567888888887899999
Q ss_pred HhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-C------CCC--CcCcEEEEccccc
Q psy12791 137 IKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-K------SLP--WGVDIVLYSLTKY 206 (393)
Q Consensus 137 ~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~------~~~--~~~di~~~S~sK~ 206 (393)
++.+++ ++++|++++++||||.+.|+++|.++|+++ |+++|+||+|+.+... . ... .+.|+++.|+||+
T Consensus 174 ~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~-~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~ 252 (407)
T PRK07179 174 RRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEF-GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA 252 (407)
T ss_pred HHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence 998876 478999999999999999999999999999 9999999999864321 1 111 2358999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcce
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLV---TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKG 281 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (393)
+ |. |+||++++ +++++.++.... .+++...+.....+ ++.++....+++++.++...+.+.|+++ ++.
T Consensus 253 ~-g~---~~G~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~- 325 (407)
T PRK07179 253 F-AG---RAGIITCP-RELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYN- 325 (407)
T ss_pred h-hc---cCeEEEeC-HHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC-
Confidence 9 43 59999987 777776654332 13333334333322 2223333445677777788888888764 221
Q ss_pred EeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcC
Q psy12791 282 VLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361 (393)
Q Consensus 282 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g 361 (393)
+. +.+.++.+.+ ++....+.+.+.|...++..+ . .+.+.. .
T Consensus 326 v~------------------~~~~i~~l~~-~~~~~~~~~~~~L~~~GI~~~---~---~~~p~~--------------~ 366 (407)
T PRK07179 326 IR------------------SESQIIALET-GSERNTEVLRDALEERNVFGA---V---FCAPAT--------------P 366 (407)
T ss_pred CC------------------CCCCEEEEEe-CCHHHHHHHHHHHHHCCceEe---e---ecCCCC--------------C
Confidence 11 1246888887 444455666666654444321 1 111110 0
Q ss_pred CCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 362 ITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 362 ~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+.||||++..+++++++.+.++|+++.
T Consensus 367 ~~~~~lRis~~~~~t~edi~~~~~~l~~~~ 396 (407)
T PRK07179 367 KNRNLIRLSLNADLTASDLDRVLEVCREAR 396 (407)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 125799999999999999999999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=198.96 Aligned_cols=312 Identities=20% Similarity=0.210 Sum_probs=217.7
Q ss_pred CccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC---cEEEeccH-HHHH-HHHHHhcCCCCeEEEcCCC
Q psy12791 33 IILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAK---HGLCYSSG-LGAV-TAVTHLLSAGDHIISGDDV 106 (393)
Q Consensus 33 ~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~---~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~~~ 106 (393)
|..++.+.+++.+.... .+.|+.-++.....+....++.++.. +.|+++.| ..++ .++..+.++||.|++..|.
T Consensus 37 f~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPv 116 (388)
T COG1168 37 FPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPV 116 (388)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCC
Confidence 33344444444444333 37777333345666666666666643 67777777 4568 8889999999999999999
Q ss_pred ccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCC-CcEEEEecCCCCcccccC---HHHHHHHHHhCCC
Q psy12791 107 YGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPN-TKMVWIENPTNPLMTVFD---VKAISAVVKQHPD 174 (393)
Q Consensus 107 y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~ 174 (393)
|++ +.+..+..|-++...|+. |.++|++++.+. ++++++||||||||.++. +.+|.++|.+| |
T Consensus 117 Y~P----F~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh-~ 191 (388)
T COG1168 117 YPP----FYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-G 191 (388)
T ss_pred chH----HHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHc-C
Confidence 995 667778899999999874 899999988754 799999999999999998 66788899999 9
Q ss_pred cEEEEeCccCcccccC--CCC--------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHH-HHHHHhcCCCCCHH
Q psy12791 175 ILLVLDNTFLTAYYQK--SLP--------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL-KFLQNSMGVVPSPF 243 (393)
Q Consensus 175 ~~livDea~~~~~~~~--~~~--------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (393)
+.||.||.+++.++.. ... ..+.+.+.|.||.|+ ++|+.+++++.+++++.++. +++.......++.+
T Consensus 192 v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~l 270 (388)
T COG1168 192 VRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSAL 270 (388)
T ss_pred CEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999966532 111 134589999999995 99999999999888875554 33333334444544
Q ss_pred HHHHH----HhccCCHHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CH
Q psy12791 244 DCWLV----TRGLKTLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GA 315 (393)
Q Consensus 244 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 315 (393)
...+. ..+-..+....+.+..|...+.+++.. .|.+. +..|. ...++|+.++. +.
T Consensus 271 g~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~-v~~p~----------------gTYL~WLD~r~l~l~d 333 (388)
T COG1168 271 GIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVK-VTEPQ----------------GTYLAWLDCRELGLDD 333 (388)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EecCC----------------CceeeeeeccccCCCh
Confidence 43222 233344666777778899999999975 45655 44443 13678988763 43
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC--ChHHHHHHHHHHHHHh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE--GYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~--~~~~~i~~l~~al~~~ 390 (393)
++.+.++.. ..+++++.|..|.- ...+++|+.++-. ..++-++++..+|+++
T Consensus 334 ~~l~~~ll~--~akVal~~G~~FG~---------------------~g~gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 334 SELAEFLLE--EAKVALSPGSTFGE---------------------EGSGFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred HHHHHHHHH--hhcEeccCCCccCc---------------------CCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 444444432 23566676655421 1269999999755 4577778888777653
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=216.26 Aligned_cols=293 Identities=17% Similarity=0.178 Sum_probs=194.4
Q ss_pred hHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 60 TRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
..+++|+.+++++|.+ +.+++++|+++ + .++.++ +++||+|++++++|.+++..+...++..|++++.++.+
T Consensus 61 ~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~ 140 (397)
T TIGR01976 61 VVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA 140 (397)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc
Confidence 3578999999999986 46888788776 5 344333 68999999999999887767777778899999988764
Q ss_pred ----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccccc
Q psy12791 132 ----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKY 206 (393)
Q Consensus 132 ----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~ 206 (393)
|++++++.+.+++++|++++|+||||.+.|+++|.++|+++ |+++++|+++..+.....+ ..++|+++.|+||+
T Consensus 141 ~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~-~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~ 219 (397)
T TIGR01976 141 TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAA-GALVVVDAVHYAPHGLIDVQATGADFLTCSAYKF 219 (397)
T ss_pred CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHc-CCEEEEehhhhccccCCCHHHcCCCEEEEechhh
Confidence 68999999988899999999999999999999999999999 9999999998754332222 25789999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHhc----------CCCCCHHHHHHHHhccCC-------------------HHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNSM----------GVVPSPFDCWLVTRGLKT-------------------LPC 257 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------------------~~~ 257 (393)
+ |+ |+||++++ +++++.+......+ .++.+......+..+++. +..
T Consensus 220 ~-g~---~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~ 294 (397)
T TIGR01976 220 F-GP---HMGILWGR-PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQA 294 (397)
T ss_pred c-CC---ceEEEEEc-HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHH
Confidence 8 54 48999997 77776654322111 111221111111111111 122
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCc
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGI 337 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 337 (393)
..++..+..+.+.+.|+.++.+. +..+. . .....+++.+.+.+ .....+.+.|...++.++.|..
T Consensus 295 ~~~~~~~l~~~l~~~L~~~~~~~-~~~~~-~-----------~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~ 359 (397)
T TIGR01976 295 IDAYENRLAEYLLVGLSDLPGVT-LYGVA-R-----------LAARVPTVSFTVHG--LPPQRVVRRLADQGIDAWAGHF 359 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEE-EeCCC-C-----------ccCCCceEEEEeCC--cCHHHHHHHHHHCCeEEEeCcc
Confidence 23333344555666666555443 22110 0 01124678887743 1233455555555666655433
Q ss_pred cccccCcccccCCCCChhhHhhcCC--CCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGI--TDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~--~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+... .....|+ ..++||+|++.++++++++.+.++|
T Consensus 360 ~~~~--------------~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 360 YAVR--------------LLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred chHH--------------HHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 3210 0111222 2478999999999999999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=193.16 Aligned_cols=304 Identities=16% Similarity=0.219 Sum_probs=211.3
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC-CeEEE
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG-DHIIS 102 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g-d~vl~ 102 (393)
+.|++|.+|+|.-.+ +. .+|+++-..+++.+++.--+.. +.|+++-|+.+ | ..+...+.|| ++|+.
T Consensus 47 d~~e~~ryPdP~q~e---------fk-~~~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~ 116 (375)
T KOG0633|consen 47 DANENPRYPDPEQME---------FK-YVYPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILD 116 (375)
T ss_pred ccccCCCCcCHHHcc---------cc-cccCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceee
Confidence 467777777654311 11 2345667777888877654433 89999999999 5 6667778899 88999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCc
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 175 (393)
..|+|+ +|.-.+...+++|+.+|.. +.+.+.+.+.. ..|.+|+++|+||||.....+.|.++.+...+.
T Consensus 117 cPPtys----MY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~ng 192 (375)
T KOG0633|consen 117 CPPTYS----MYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNG 192 (375)
T ss_pred cCCcce----eEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCc
Confidence 999998 6777778889999999885 67888777754 489999999999999999999999988864478
Q ss_pred EEEEeCccCccccc-CCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH-HH
Q psy12791 176 LLVLDNTFLTAYYQ-KSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL-VT 249 (393)
Q Consensus 176 ~livDea~~~~~~~-~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (393)
++|+||+|.+|... +.+ .+.+.+++.++||.| |++|+|+||...+ ..+.+.+......+..+......++ ++
T Consensus 193 lVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~~-~~ia~iln~~KaPYNiS~~~s~~AL~Al 270 (375)
T KOG0633|consen 193 LVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAFP-LSIAEILNRAKAPYNISVAGSVAALAAL 270 (375)
T ss_pred EEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeeccccc-HHHHHHHHhccCCccccchhHHHHHHhc
Confidence 99999999997652 211 257889999999999 8999999999997 8888877766655443332222222 21
Q ss_pred h--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHh-c
Q psy12791 250 R--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLES-L 325 (393)
Q Consensus 250 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-l 325 (393)
. ..+.++..++...+.+.++...|...+.+.. +++ +...+++-+++.+ +...+.++... +
T Consensus 271 s~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~--~~g--------------g~daNFiLi~v~~~~n~~akkly~q~a 334 (375)
T KOG0633|consen 271 SDSNGKKMEDVRDAIVRERERLFKELTEVPFLND--YPG--------------GSDANFILIEVTGGDNGMAKKLYKQDA 334 (375)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHhhcCccccC--CCC--------------cccccEEEEEEcCCCcHHHHHHHHHHH
Confidence 1 3345666777777788888888887776543 333 1134677777753 33444444333 3
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHHH
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADLD 384 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l~ 384 (393)
...++.+.+-+.+-. ..|++|+++|.+ ++.-+++.+.
T Consensus 335 t~~gVvVRfrgse~~----------------------c~G~lRitvGt~EentvL~k~~K 372 (375)
T KOG0633|consen 335 TKMGVVVRFRGSEEG----------------------CKGYLRITVGTPEENTVLMKCLK 372 (375)
T ss_pred HhcceEEEEcCCccc----------------------cceeEEEEcCCcccchHHHHHHH
Confidence 333444444333211 269999999855 4444444443
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=214.20 Aligned_cols=315 Identities=18% Similarity=0.193 Sum_probs=204.3
Q ss_pred CCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEE-EeccHHHHH-HHHHHhcCCCCeEEEcCCC
Q psy12791 31 PPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGL-CYSSGLGAV-TAVTHLLSAGDHIISGDDV 106 (393)
Q Consensus 31 ~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i-~~~~G~~al-~~~~~~~~~gd~vl~~~~~ 106 (393)
.|...++.+.+++.+... .+.|.. .....+++++.+++++|++ +.+ ++++|++++ .++.+++++||+|++++++
T Consensus 6 ~~~~~~~~v~~a~~~~~~-~~~~~~-~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~ 83 (356)
T cd06451 6 GPSNVPPRVLKAMNRPML-GHRSPE-FLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNG 83 (356)
T ss_pred CCcCCCHHHHHHhCCCcc-CCCCHH-HHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCC
Confidence 344455555555544321 122211 1233678999999999984 344 445556677 6777888999999999888
Q ss_pred ccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEe
Q psy12791 107 YGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 107 y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livD 180 (393)
|.+. .+...++..|++++.++.+ |++++++.+.+ ++++|++++|+||||.+.|+++|.++|+++ |+++++|
T Consensus 84 ~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~-~~~li~D 160 (356)
T cd06451 84 VFGD--RWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKH-DALLIVD 160 (356)
T ss_pred chhH--HHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhc-CCEEEEe
Confidence 7653 2445677889999988764 78999999987 899999999999999999999999999999 9999999
Q ss_pred CccCcccccC-CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH----H---------HH------hcCCCC
Q psy12791 181 NTFLTAYYQK-SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF----L---------QN------SMGVVP 240 (393)
Q Consensus 181 ea~~~~~~~~-~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~----~---------~~------~~~~~~ 240 (393)
++|+.+.... ....+.|+++.|+||++++++| +||++.+ +++++.+.. . .. ......
T Consensus 161 ~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 237 (356)
T cd06451 161 AVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPG--LGPIAFS-ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP 237 (356)
T ss_pred eehhccCccccccccCccEEEecCchhccCCCC--cceeEEC-HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCC
Confidence 9987543221 1234789999999999976666 8999997 777776643 0 00 111222
Q ss_pred CHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 241 SPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 241 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
+......+...++ .+....++..+++..+.+.|+.. ++. +..+. . ...+.++++.++ ..
T Consensus 238 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--~-----------~~~~~~~~~~~~-~~ 301 (356)
T cd06451 238 PVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLK-LLAKP--E-----------LRSPTVTAVLVP-EG 301 (356)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe-eccCc--c-----------cCCCceEEEECC-CC
Confidence 2322222222222 23334455556667777777754 222 11110 0 112344566663 22
Q ss_pred HHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 316 EETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 316 ~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.....+.+.|... ++.+..|..+ ..+++||+|++..+++++++.+.++|+++.+
T Consensus 302 ~~~~~~~~~L~~~~gI~~~~g~~~-----------------------~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 302 VDGDEVVRRLMKRYNIEIAGGLGP-----------------------TAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CCHHHHHHHHHHhCCEEEeccccc-----------------------ccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 2334455555443 4444433210 0147999999999999999999999987643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=215.75 Aligned_cols=305 Identities=17% Similarity=0.145 Sum_probs=196.5
Q ss_pred CchHHHHHHHHHH---HhCC--CcEEEeccHHHH-H-HHHHHh-----cCC-CCeEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 58 NPTRRNLERCIAS---LEEA--KHGLCYSSGLGA-V-TAVTHL-----LSA-GDHIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 58 ~~~~~~lr~~la~---~~~~--~~~i~~~~G~~a-l-~~~~~~-----~~~-gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
......+++++++ .++. +++|++++|+++ + .++.++ .++ +++|+++..+|++... +...++..|++
T Consensus 38 ~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~-~~~~~~~~G~~ 116 (382)
T TIGR03403 38 TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA-TCAFLESLGVE 116 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH-HHHHHHHCCCE
Confidence 3445556665554 4554 378888888776 6 445443 245 4689999988876544 33455778999
Q ss_pred EEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcE
Q psy12791 125 VDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDI 198 (393)
Q Consensus 125 v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di 198 (393)
++.++.+ |++++++.+++++++|++++|+||||.++|+++|.++|+++ |+++++|+++..+...... ..+.|+
T Consensus 117 v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~-g~~~ivD~a~~~g~~~~~~~~~~~D~ 195 (382)
T TIGR03403 117 VTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKER-GVLFHTDAVQAIGKIPVDVQKAGVDF 195 (382)
T ss_pred EEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHc-CCEEEEechhhcCCCccCccccCCCE
Confidence 9999875 68999999988899999999999999999999999999999 9999999999865432222 357899
Q ss_pred EEEcccccccCCCCceEEEEEecChHHH-HHHHH---HHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHH
Q psy12791 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKF---LQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVA 270 (393)
Q Consensus 199 ~~~S~sK~~~G~~G~r~G~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 270 (393)
++.|++|++ |++| +|+++.++..-. ..+.. ......+.++......+..+++. ++...++..+.++++.
T Consensus 196 ~~~s~~K~~-gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 272 (382)
T TIGR03403 196 LSFSAHKFH-GPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLE 272 (382)
T ss_pred EEEcchhhC-CCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999997 7999 788887632110 10000 00000112222222222222221 2333444555566777
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCC
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~ 350 (393)
+.|++++++..+ .+. . ...++++.|.+++ ...+.+...|...++.++.|..|+.....
T Consensus 273 ~~L~~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~--~~~~~~~~~L~~~gI~v~~g~~c~~~~~~------ 330 (382)
T TIGR03403 273 DALLELPDVFVV-GDR--E-----------HRVPNTILISIKG--VEGEAMLWDLNKAGIAASTGSACASEDLE------ 330 (382)
T ss_pred HHHhcCCCEEEE-CCC--C-----------CCcCCEEEEEeCC--CCHHHHHHhhccCCEEEEchhccCCCCCC------
Confidence 777766665422 111 0 0113577778853 12334555566668888877655422110
Q ss_pred CCChhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 351 SIPKETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 351 ~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.....++|.. .+.||+|++.++|+++++.+.++|+++.
T Consensus 331 --~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 331 --ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred --cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 11223334432 4789999999999999999999998664
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=213.72 Aligned_cols=214 Identities=16% Similarity=0.128 Sum_probs=150.2
Q ss_pred CCchHHHHHHHHHHHhCCC-------cE-----EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 57 NNPTRRNLERCIASLEEAK-------HG-----LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~-------~~-----i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
+..+..+||+++++++... +. ++.++|+.++ ..+..++.|||+|++++|+|+. |...++..|+
T Consensus 89 ~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~----y~~~~~~~g~ 164 (423)
T PLN02397 89 PIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGN----HHNIFRDAGV 164 (423)
T ss_pred CcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchh----HHHHHHHcCC
Confidence 4568889999999976321 12 3445666665 6666666799999999999984 7788889999
Q ss_pred EEEeeCC-C------CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 EVDFVDL-R------KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 ~v~~~~~-~------d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+++.+++ + |++.+++.+. ++++++++++||||||.+++ +++|.++|+++ +++||+||+|.++.+..
T Consensus 165 ~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l~~~~ 243 (423)
T PLN02397 165 PVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGFASGD 243 (423)
T ss_pred eEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCccCCc
Confidence 9999875 1 6776666654 46788888999999999998 56678888999 99999999999876532
Q ss_pred ------CC---C--CcCcEEEEcccccccCCCCceEEEEE--ecChHHHHHHH----HHHHhcCCCCCHHHHHHHHhccC
Q psy12791 191 ------SL---P--WGVDIVLYSLTKYMNGHSDVVMGATV--TNDDSLQARLK----FLQNSMGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 191 ------~~---~--~~~di~~~S~sK~~~G~~G~r~G~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
+. . ....++++||||.+ |++|+|+||++ +.++++++.+. ........+.+...+..+...++
T Consensus 244 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~ 322 (423)
T PLN02397 244 LDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILG 322 (423)
T ss_pred hhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC
Confidence 11 0 12468999999999 69999999985 44455554332 22222232334444454444443
Q ss_pred C----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 254 T----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 254 ~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
. +...++...++++.+.+.|+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~ 355 (423)
T PLN02397 323 DPELFSEWTKELKGMADRIISMRQKLYDALEAR 355 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 2233445667777788888765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=209.48 Aligned_cols=219 Identities=15% Similarity=0.143 Sum_probs=146.7
Q ss_pred CccccCCCCchHHHHHHHHHHHhC-----C--C--cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhc
Q psy12791 50 GFEYSRSNNPTRRNLERCIASLEE-----A--K--HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVA 118 (393)
Q Consensus 50 ~~~y~~~~~~~~~~lr~~la~~~~-----~--~--~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~ 118 (393)
.+.|+ +..+..+||+++++++. . + ++|++|+|+++ + .++..++++||.|++++|+|+. |...+
T Consensus 37 ~~~Y~--~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~----~~~~~ 110 (388)
T PRK08637 37 IFPYA--PPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGN----YKLTF 110 (388)
T ss_pred ccCCC--CCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCcc----HHHHH
Confidence 34454 34678899999998752 1 2 46899999886 6 6666778999999999999984 55544
Q ss_pred -ccCCcEEEeeCC--C----CHHHHHhhcC----CCCcEEEEecCCCCcccccC---HHHHHHHHHh-----CCCcEEEE
Q psy12791 119 -PKIGLEVDFVDL--R----KIENLIKYIK----PNTKMVWIENPTNPLMTVFD---VKAISAVVKQ-----HPDILLVL 179 (393)
Q Consensus 119 -~~~g~~v~~~~~--~----d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~-----~~~~~liv 179 (393)
...|++++.++. + |++++++.++ +.++++++++||||||.+++ +++|+++|++ + +++||+
T Consensus 111 ~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~-~~~iI~ 189 (388)
T PRK08637 111 NTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGT-KVVAVV 189 (388)
T ss_pred HHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence 457999999887 3 6888888775 34566778999999999998 5566666654 8 999999
Q ss_pred eCccCcccccC----C-CC-----CcCc--EEEEcccccccCCCCceEEEEEec-----ChHHHHHHHHHH----HhcCC
Q psy12791 180 DNTFLTAYYQK----S-LP-----WGVD--IVLYSLTKYMNGHSDVVMGATVTN-----DDSLQARLKFLQ----NSMGV 238 (393)
Q Consensus 180 Dea~~~~~~~~----~-~~-----~~~d--i~~~S~sK~~~G~~G~r~G~~~~~-----~~~~~~~~~~~~----~~~~~ 238 (393)
||+|.++.+.. + .. .+.. ++++|+||.+ +.||+|+||++++ ++++.+.+.... .....
T Consensus 190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (388)
T PRK08637 190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS 268 (388)
T ss_pred cccchhcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC
Confidence 99999865432 1 01 1232 3345999999 6999999999964 267777765321 11122
Q ss_pred CCCHHHHHHHHhccCC--HHHH----HHHHHHHHHHHHHHHhhC
Q psy12791 239 VPSPFDCWLVTRGLKT--LPCR----LKEHERGSIEVAKFLESH 276 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~l~~~l~~~ 276 (393)
..+...+..+...++. +... +....++...+.+.|+..
T Consensus 269 ~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~ 312 (388)
T PRK08637 269 NGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDG 312 (388)
T ss_pred CCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555443 2111 222334444556666543
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=213.00 Aligned_cols=300 Identities=17% Similarity=0.132 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhc---CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 60 TRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLL---SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~---~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
..+++|+.+++++|++ +.+++++|++ ++ .++..+. .+||+|+++..+|++....+. .++..|++++.++.+
T Consensus 43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~ 121 (379)
T TIGR03402 43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQ-HLEKQGYKVTYLPVDEE 121 (379)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHH-HHHHcCCEEEEEccCCC
Confidence 4678899999999986 5677776655 56 5555442 457899999999986554443 345579999999864
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccccc
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYM 207 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~ 207 (393)
|++++++.++++++++++++++||||.++|+++|.++|+++ |+++++|++++.+.....+ ..++|+++.|.+|++
T Consensus 122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~-g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~ 200 (379)
T TIGR03402 122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKER-GALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLH 200 (379)
T ss_pred CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHc-CCEEEEECcccccccccCcccCCCCEEEEcHHHcC
Confidence 78999999988999999999999999999999999999999 9999999999876543222 257899999999966
Q ss_pred cCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhh-
Q psy12791 208 NGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLES- 275 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~- 275 (393)
|++| +|+++.++ ... +..... ...+..+......+...++. +....++..+....+.+.|+.
T Consensus 201 -gp~G--~g~l~v~~-~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 274 (379)
T TIGR03402 201 -GPKG--VGALYIRK-GTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLAR 274 (379)
T ss_pred -CCCc--eEEEEECC-CCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999 89988873 321 110000 01112222222212222222 222333444455566666653
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
++.+... -+. . ...++++.|.+++ . ..+.+...|...++.++.|..|+..... +..
T Consensus 275 ~~~~~~~-~~~--~-----------~~~~~~~~~~~~~-~-~~~~~~~~l~~~gI~v~~g~~c~~~~~~--------~~~ 330 (379)
T TIGR03402 275 IPDARLN-GDP--T-----------KRLPNTVNISFEY-I-EGEAILLLLDMEGICASSGSACTSGSLE--------PSH 330 (379)
T ss_pred CCCEEEe-CCC--c-----------cCCCCEEEEEecC-C-CHHHHHHhhccCCEEEEchhhcCCCCCC--------cCH
Confidence 5554321 111 0 0113566666643 1 2345666676668888877665433211 112
Q ss_pred hHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 356 TRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 356 ~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+|.. .+.||+|++.++++++|+.+.++|+++.
T Consensus 331 ~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 331 VLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred HHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 23334432 5799999999999999999999998764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=208.26 Aligned_cols=284 Identities=17% Similarity=0.150 Sum_probs=196.7
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...++++.++++++.++.+++++|++++ .++.+++++||+|++++|+|.+ +...++..|++++.++..|.+++
T Consensus 45 ~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~l 120 (349)
T cd06454 45 SDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHAS----IIDGIRLSGAKKRIFKHNDMEDL 120 (349)
T ss_pred chHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHH----HHHHHHHcCCceEEecCCCHHHH
Confidence 577899999999999998899999999886 6667778999999999999985 34456678999998877777888
Q ss_pred HhhcCC-----CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-C-------C-CCCcCcEEEEc
Q psy12791 137 IKYIKP-----NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-K-------S-LPWGVDIVLYS 202 (393)
Q Consensus 137 ~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~-------~-~~~~~di~~~S 202 (393)
++.+.+ ++++|++++++||||...|+++|.++|+++ |+++|+|++|+.+... . . ...+.|++++|
T Consensus 121 e~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~-~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s 199 (349)
T cd06454 121 EKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKY-GAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGT 199 (349)
T ss_pred HHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHc-CCEEEEEccccccccCCCCCChhhhccccccCcEEEee
Confidence 887753 478888899999999999999999999999 9999999999754321 1 1 12467899999
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
+||++ |++ +||++.+ +++.+.+...... .+...++.....+...++. ....+++..++.+.+.+.|..+
T Consensus 200 ~sK~~-~~~---gG~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~- 273 (349)
T cd06454 200 LGKAF-GAV---GGYIAGS-KELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL- 273 (349)
T ss_pred chhhh-ccc---CCEEECC-HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999 454 4898887 7777776543322 2233444443333333322 2345566667777777777654
Q ss_pred CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 278 CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 278 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
++..+ .+ ..+.+.++.+. +....+.+.+.|...++.+..++... .
T Consensus 274 g~~~~-~~----------------~~~~~~~~~~~-~~~~~~~~~~~L~~~gI~~~~~~~~~---~-------------- 318 (349)
T cd06454 274 GFPVG-GS----------------PSHIIPPLIGD-DPAKAVAFSDALLERGIYVQAIRYPT---V-------------- 318 (349)
T ss_pred CCccc-CC----------------CCCcEEEEeCC-ChHHHHHHHHHHHhCCceEEEecCCc---c--------------
Confidence 21101 00 01233444442 23345566666554455544321100 0
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....++||++++..+++++++.+.++|+++
T Consensus 319 ---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 319 ---PRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred ---CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 011479999999999999999999998765
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-25 Score=214.19 Aligned_cols=285 Identities=18% Similarity=0.165 Sum_probs=199.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+||+++|+++|.++++++++|..+. .++.+++++||.|++++++|.+ +...++..|++++.++.+|.+++
T Consensus 145 ~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s----~~~~~~~~Ga~v~~~~~~d~~~l 220 (489)
T PLN02483 145 TKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNS----IVNGARGSGATIRVFQHNTPSHL 220 (489)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHH----HHHHHHHcCCeEEEEeCCCHHHH
Confidence 578899999999999999999999998886 6777889999999999999986 44557888999999998887777
Q ss_pred HhhcC-------CCC-----c-EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---------CCCC-
Q psy12791 137 IKYIK-------PNT-----K-MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---------KSLP- 193 (393)
Q Consensus 137 ~~~l~-------~~~-----~-~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---------~~~~- 193 (393)
++.++ +++ + +|+++...|++|.+.++++|.++|+++ ++++|+||+|+.+... ....
T Consensus 221 e~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~-~~~livDEa~s~g~~G~~G~g~~~~~~v~~ 299 (489)
T PLN02483 221 EEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKY-KAYVYLDEAHSIGAVGKTGRGVCELLGVDP 299 (489)
T ss_pred HHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHc-CCEEEEECcCccCccCCCCCchHHhcCCCc
Confidence 66553 222 5 444466779999999999999999999 9999999999854321 1111
Q ss_pred CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhcc---------CCHHHHHHHH
Q psy12791 194 WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGL---------KTLPCRLKEH 262 (393)
Q Consensus 194 ~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 262 (393)
.+.|++++||||++ |+. +||++++ +++++.++..... ++...++.....+...+ +....+++++
T Consensus 300 ~~~dI~~~SfSKs~-g~~---GG~i~~~-~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l 374 (489)
T PLN02483 300 ADVDIMMGTFTKSF-GSC---GGYIAGS-KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQI 374 (489)
T ss_pred ccCcEEEEecchhc-ccC---ceEEEcC-HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHH
Confidence 35789999999999 565 4999987 8888888754321 23333333322222222 1233456777
Q ss_pred HHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCcccccc
Q psy12791 263 ERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLAD 342 (393)
Q Consensus 263 ~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~ 342 (393)
.++.+.+.+.|+++ ++. +..+. .+.++++.+ ........+.+.+...++.+...+.. .
T Consensus 375 ~~~~~~l~~~L~~~-G~~-v~~~~----------------~sp~~~l~l-~~~~~~~~~~~~Ll~~GI~v~~~~fp---~ 432 (489)
T PLN02483 375 RENSNFFRSELQKM-GFE-VLGDN----------------DSPVMPIML-YNPAKIPAFSRECLKQNVAVVVVGFP---A 432 (489)
T ss_pred HHHHHHHHHHHHHC-CCc-ccCCC----------------CCCEEEEEE-CCHHHHHHHHHHHHHCCcEEeeeCCC---C
Confidence 78888888888865 221 11111 135667766 34445556666654445554421110 0
Q ss_pred CcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 343 LPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+ ...+.+|++++..+++++++.+.++|+++.
T Consensus 433 ~p-----------------~~~~~vRi~isa~~t~edId~~l~~L~~~~ 464 (489)
T PLN02483 433 TP-----------------LLLARARICISASHSREDLIKALEVISEVG 464 (489)
T ss_pred CC-----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 00 114789999999999998888888887654
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=207.05 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=155.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
.+|...++++++|+++|. +.+++++|++ ++ .++..++++||+|+++.++|.+.+ ..++..|++++.++.+
T Consensus 42 ~~~~~~~l~~~la~~~g~-~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~ 116 (361)
T cd06452 42 EKPPIKDFHHDLAEFLGM-DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHP 116 (361)
T ss_pred cCchHHHHHHHHHHHcCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCC
Confidence 357789999999999999 5556666655 57 677778899999999999987643 3467889999988753
Q ss_pred ----CHHHHHhhcC-------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-CCCCCcCcEE
Q psy12791 132 ----KIENLIKYIK-------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIV 199 (393)
Q Consensus 132 ----d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~~~~~~~di~ 199 (393)
|+++++++++ +++++|++++|+||||.+.|+++|.++|+++ |+++|+|++|+.+... .....++|++
T Consensus 117 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~-~~~vivD~a~~~g~~~~~~~~~~~d~~ 195 (361)
T cd06452 117 EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEY-GVPLLLNGAYTVGRMPVSGKELGADFI 195 (361)
T ss_pred CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHc-CCeEEEECCcccCCcCCCHHHcCCCEE
Confidence 6788888775 3689999999999999999999999999999 9999999999865432 2223578999
Q ss_pred EEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc--------CCCCCHHHHHHHHhccCCHH---HHHHHHHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--------GVVPSPFDCWLVTRGLKTLP---CRLKEHERGSIE 268 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 268 (393)
++|+||+++ .++ |+||++++ ++++++++.....+ +..........+...++... .+..+..+++++
T Consensus 196 ~~s~~K~l~-~~~-~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~ 272 (361)
T cd06452 196 VGSGHKSMA-ASA-PIGVLATT-EEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARW 272 (361)
T ss_pred EecCCcccc-CCC-CeEEEEEC-HHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 444 89999997 78888775543221 11111111222222222222 233334455678
Q ss_pred HHHHHhhCCCcc
Q psy12791 269 VAKFLESHPCVK 280 (393)
Q Consensus 269 l~~~l~~~~~~~ 280 (393)
+.+.|+++++++
T Consensus 273 l~~~L~~l~g~~ 284 (361)
T cd06452 273 FVAELEKIEGIK 284 (361)
T ss_pred HHHHHhcCCCeE
Confidence 888888877654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=212.39 Aligned_cols=300 Identities=19% Similarity=0.185 Sum_probs=193.2
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...+++|+.+|+++|.+ +++++++|+++ + .++..+ .++||+|+++.++|++....+. .++..|++++.++.+
T Consensus 47 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~ 125 (402)
T TIGR02006 47 EAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLPPK 125 (402)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEccC
Confidence 45678899999999986 57788777665 6 444433 3689999999999987654443 345679999998874
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++++||||.+.|+++|.++|+++ |+++++|++++.+...... ..+.|+++.|++|
T Consensus 126 ~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~-g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K 204 (402)
T TIGR02006 126 SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRER-KVFFHVDAAQSVGKIPINVNELKVDLMSISGHK 204 (402)
T ss_pred CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHc-CCEEEEEcchhcCCcccCccccCCCEEEEehhh
Confidence 78999999988899999999999999999999999999999 9999999999876543222 2578999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHh
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~ 274 (393)
++ |++| +|+++.+++. ...+..... ...+.........+...++ .+..+.++..+....+.+.|+
T Consensus 205 ~~-gp~G--~G~l~~~~~~-~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~ 280 (402)
T TIGR02006 205 IY-GPKG--IGALYVRRKP-RVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIK 280 (402)
T ss_pred hc-CCCc--eEEEEEccCC-CCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 87 7888 8888887332 222221111 0111222222222222222 233333444455566666666
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCC
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
.++.+... .+. . ......+.|.+.+ +. +.+...++ ++.++.|..++..... +
T Consensus 281 ~~~~v~~~-~~~-~------------~~~p~~~~v~f~~~~~---~~~~~~l~--~i~v~~G~~c~~~~~~--------~ 333 (402)
T TIGR02006 281 SIEEVYLN-GDL-E------------HRVPGNLNVSFNYVEG---ESLIMALK--DLAVSSGSACTSASLE--------P 333 (402)
T ss_pred cCCCEEEe-CCc-c------------ccCCCeEEEEEeCcCH---HHHHHhcC--CEEEechhhcCCCCCC--------c
Confidence 66654311 110 0 0012232344432 22 23344443 4555555443321110 1
Q ss_pred hhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 354 KETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 354 ~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.....++|.. .++||+|++.++|+++++.+.++|+++.
T Consensus 334 ~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~ 375 (402)
T TIGR02006 334 SYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAI 375 (402)
T ss_pred cHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1222234443 5899999999999999999999998764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=211.59 Aligned_cols=293 Identities=19% Similarity=0.192 Sum_probs=191.9
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...+++|+.+++++|.+ +++++++|++ ++ .++.. +.++||+|++++.+|++....+.. ++..|++++.++.+
T Consensus 43 ~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~ 121 (364)
T PLN02651 43 DAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEVTYLPVK 121 (364)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEEEEEccC
Confidence 44678999999999986 5777777665 45 44433 247899999999999875544443 34679999888764
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+++++++|++++++|+||.+.|+++|.++|+++ |+++++|++++.+.....+ ..++|+++.|.+|
T Consensus 122 ~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~-g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK 200 (364)
T PLN02651 122 SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREK-KVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHK 200 (364)
T ss_pred CCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHc-CCEEEEEcchhhCCcccCcccCCCCEEEechhh
Confidence 78999999998999999999999999999999999999999 9999999999976543222 3579999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHh
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGLKTLP----CRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~ 274 (393)
|+ |++| +|+++.+ ++..+.+..... ...++.+......+..+++.+. ...++..+...++.+.|+
T Consensus 201 ~~-gp~G--~g~l~v~-~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~ 276 (364)
T PLN02651 201 IY-GPKG--VGALYVR-RRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLR 276 (364)
T ss_pred hC-CCCc--eEEEEEc-CCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 86 7988 9999987 443333321111 0112222222222233333222 223333444555566665
Q ss_pred h-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCC
Q psy12791 275 S-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 275 ~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
+ .+++. +..|.-+. ....+++.|.+++ ...+.+...|.. +.++.|..|+..... +
T Consensus 277 ~~~~~~~-i~~~~~~~-----------~~~~~i~~~~~~~--~~~~~~~~~L~~--i~v~~g~~c~~~~~~--------~ 332 (364)
T PLN02651 277 AKLGGVR-VNGPRDPE-----------KRYPGTLNLSFAY--VEGESLLMGLKE--VAVSSGSACTSASLE--------P 332 (364)
T ss_pred hhCCCEE-EECCCCcc-----------cCcCCEEEEEeCC--CCHHHHHHHhCC--EEEEchhhcCCCCCC--------c
Confidence 3 45543 22221000 1124688888854 123345555544 777777665433211 1
Q ss_pred hhhHhhcCCC----CCeEEEEecCCChHHHHH
Q psy12791 354 KETRDALGIT----DNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 354 ~~~~~~~g~~----~~~iRls~~~~~~~~~i~ 381 (393)
......+|.. .+.||+|++.+||+++|+
T Consensus 333 ~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 333 SYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 2233334443 489999999999998874
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=214.53 Aligned_cols=185 Identities=20% Similarity=0.240 Sum_probs=130.8
Q ss_pred CCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHH-HHhC-------CC-c--EEEeccHHHH-H-HHHHH-----
Q psy12791 31 PPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA-SLEE-------AK-H--GLCYSSGLGA-V-TAVTH----- 92 (393)
Q Consensus 31 ~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la-~~~~-------~~-~--~i~~~~G~~a-l-~~~~~----- 92 (393)
.|-.+++.+..++.+.... ..|. +..+...++++++ +++. .+ + +|++|+|+++ + .++.+
T Consensus 103 ~p~~~~~~~~~~~~~~~~~-~~Y~--~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ 179 (521)
T TIGR03801 103 QLGFDPDAFLYEMCDGIIG-DNYP--VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANE 179 (521)
T ss_pred CCCCCCCHHHHHHHHHhhc-CCCC--CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhh
Confidence 3444455666655444221 2232 1234445555554 4432 12 3 7999999886 6 55544
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhccc--CCcEEEeeCCC------------CHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPK--IGLEVDFVDLR------------KIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~--~g~~v~~~~~~------------d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
++.|||+|++++|+|+. |...++. .|++++.++.+ |.+++++++++++|+|++++||||||.
T Consensus 180 ll~pGD~Vlv~~P~y~~----y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~ 255 (521)
T TIGR03801 180 LLKKGDKIALMTPIFTP----YLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSV 255 (521)
T ss_pred cCCCCCEEEEeCCCcHH----HHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCC
Confidence 68999999999999984 5555444 47787777642 457888888888999999999999999
Q ss_pred ccC---HHHHHHHHHhC-CCcEEEEeCccCccccc-CCC-C--CcCcEEEEcccccccCCCCceEEEEEecCh
Q psy12791 159 VFD---VKAISAVVKQH-PDILLVLDNTFLTAYYQ-KSL-P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDD 223 (393)
Q Consensus 159 ~~~---~~~l~~l~~~~-~~~~livDea~~~~~~~-~~~-~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~ 223 (393)
+++ +++|.++|+++ ++++||+||+|..+... .++ . ..+.+++.||||.+ |++|+|+||++++++
T Consensus 256 vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 256 AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKD 327 (521)
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCch
Confidence 999 66677778875 48999999999976532 111 1 23679999999999 799999999999854
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=208.29 Aligned_cols=284 Identities=14% Similarity=0.080 Sum_probs=195.1
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHH
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~ 137 (393)
+..+++++.+++++|.++.+++++|++++ .++..++++||+|++++|+|++ +...++..|.+++.++..|+++++
T Consensus 87 ~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~l~ 162 (397)
T PRK06939 87 DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHAS----IIDGVRLCKAKRYRYANNDMADLE 162 (397)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHH----HHHHHHhcCCceEEeCCCCHHHHH
Confidence 45678999999999988999999998887 6677788999999999999985 444566778888888877888888
Q ss_pred hhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCCCcCcEEEEc
Q psy12791 138 KYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLPWGVDIVLYS 202 (393)
Q Consensus 138 ~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~~~~di~~~S 202 (393)
+.+.+ ++++|++.+.+|++|...++++|.++|+++ +++||+||+|..+.... .+..+.|++++|
T Consensus 163 ~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~-~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S 241 (397)
T PRK06939 163 AQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKY-DALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGT 241 (397)
T ss_pred HHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHh-CCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEE
Confidence 77753 678888888999999999999999999999 99999999996433211 111246899999
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
+||+++| .|+||++++ +++++.++.... .+++...+..+..+...+ +.....+++..++.+.+.+.|+...
T Consensus 242 ~sK~~~g---~r~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 317 (397)
T PRK06939 242 LGKALGG---ASGGYTAGR-KEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAG 317 (397)
T ss_pred CHHHhCc---cCceEEEeC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999943 379999987 788887765432 123333343333222222 2223445666677777778777542
Q ss_pred CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 278 CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 278 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
+. . .+ +.++++.+.+. +......|.+.+...++.+.. +.+...
T Consensus 318 -~~-~-~~----------------~~~~~~~~~~~-~~~~~~~~~~~L~~~gI~v~~-~~~~~~---------------- 360 (397)
T PRK06939 318 -FT-L-GP----------------GEHPIIPVMLG-DAKLAQEFADRLLEEGVYVIG-FSFPVV---------------- 360 (397)
T ss_pred -CC-c-CC----------------CCCCEEEEEEC-CHHHHHHHHHHHHHCCceEee-eCCCCC----------------
Confidence 11 1 01 12356655563 333455666666544555442 111000
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+...++||++++..+++++++.+.+.|+++.
T Consensus 361 ---~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 361 ---PKGQARIRTQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred ---CCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 0114689999999888888888888887653
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=203.85 Aligned_cols=300 Identities=17% Similarity=0.183 Sum_probs=200.3
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 53 y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
|++. ....+|++++|+++|.++++++++|+++. .++.+++++||+|+++++.|.++.. .+...+.+++.++..
T Consensus 39 yg~~--~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~----~~~l~~~~~~~~~~~ 112 (392)
T PLN03227 39 YGTI--DAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLV----GVSLSRANVRWFRHN 112 (392)
T ss_pred cCCh--HHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHH----HHHHcCCeEEEeCCC
Confidence 5554 47889999999999999999999999996 7788899999999999999987433 234456788888877
Q ss_pred CHHHHHh---hcC-----------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC-------
Q psy12791 132 KIENLIK---YIK-----------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK------- 190 (393)
Q Consensus 132 d~~~l~~---~l~-----------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~------- 190 (393)
|.+++++ .+. +++++|++++++||+|.+.|+++|.++|+++ |+++|+||+|+.+....
T Consensus 113 d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~-g~~livDe~~~~g~~g~~G~g~~~ 191 (392)
T PLN03227 113 DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEF-HYRLILDESFSFGTLGKSGRGSLE 191 (392)
T ss_pred CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHc-CCEEEEECcccccccCCCCCcHHH
Confidence 6655444 332 2578999999999999999999999999999 99999999998543211
Q ss_pred ----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH--HhcCCCCCHHHHHHHHhcc---CCHHHHHHH
Q psy12791 191 ----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ--NSMGVVPSPFDCWLVTRGL---KTLPCRLKE 261 (393)
Q Consensus 191 ----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 261 (393)
....++|+++.|+||++ |+ ++|+++++ +++++.++... ..+++..+|..++.+...+ ...+.++++
T Consensus 192 ~~g~~p~~~~Div~~slsk~~-g~---~gg~v~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~ 266 (392)
T PLN03227 192 HAGLKPMVHAEIVTFSLENAF-GS---VGGMTVGS-EEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNR 266 (392)
T ss_pred HcCCCCCCCceEEEeechhhh-hc---cCcEEecC-HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11236799999999998 54 46888876 77776665322 2345544565544443332 223356777
Q ss_pred HHHHHHHHHHHHhh--CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH---------HHHHHHhcCcccc
Q psy12791 262 HERGSIEVAKFLES--HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE---------TRIFLESLLIFRC 330 (393)
Q Consensus 262 ~~~~~~~l~~~l~~--~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~ 330 (393)
..++.+++.+.|+. ++.+..+.- ++. . .....+.++.|.+. +... ...+.+.+...++
T Consensus 267 l~~~~~~l~~~L~~~~~~~~~~~rg-~~~--------~-~~~~~~~i~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gi 335 (392)
T PLN03227 267 LHDSIANLYSTLTNSSHPYALKLRN-RLV--------I-TSDPISPIIYLRLS-DQEATRRTDETLILDQIAHHSLSEGV 335 (392)
T ss_pred HHHHHHHHHHHHHhcCCcccccccc-ccc--------c-CCCCCCCEEEEEeC-CHHHhhhhhhhhHHHHHHHHHHHCCC
Confidence 77888888888864 121111110 000 0 00123578888884 3222 2355555544343
Q ss_pred ccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 331 ~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...+.......+ -.++..||++++..+++++++.+.++|+++.
T Consensus 336 ~~~~~~~~~~~~~~----------------~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~ 380 (392)
T PLN03227 336 AVVSTGGHVKKFLQ----------------LVPPPCLRVVANASHTREDIDKLLTVLGEAV 380 (392)
T ss_pred EEEecccccCCcCC----------------CCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 33211111100001 1236789999999999999999998888664
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=208.67 Aligned_cols=289 Identities=13% Similarity=0.130 Sum_probs=201.3
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+|+++||++++.++++++++|.+++ .++.+++++||.|++....|.+ +...++..+.+++.++.+|.+++
T Consensus 153 ~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s----~~~~~~ls~~~~~~~~~nd~~~l 228 (481)
T PLN02822 153 IDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWG----IQNGLYLSRSTIVYFKHNDMESL 228 (481)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHH----HHHHHHHcCCeEEEECCCCHHHH
Confidence 467899999999999999999999998887 7888899999999987776653 34455667889999998877666
Q ss_pred HhhcC---------CCC-cEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCC-CcC
Q psy12791 137 IKYIK---------PNT-KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLP-WGV 196 (393)
Q Consensus 137 ~~~l~---------~~~-~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~-~~~ 196 (393)
+..+. +++ ++|+++.++|++|.+.|+++|.++|++| ++++|+||+|+.+.+.. .+. ...
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~-~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~ 307 (481)
T PLN02822 229 RNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKY-RFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKI 307 (481)
T ss_pred HHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHc-CCEEEEECCccccccCCCCCChHHHcCCCCCCC
Confidence 65542 234 6899999999999999999999999999 99999999999655321 111 246
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVAK 271 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 271 (393)
|+++.||+|.+ |..| ||++++ +++++.++.... .+++..++..+..+...++ .....++++.++.+.+.+
T Consensus 308 dii~~s~sKal-g~~G---G~i~g~-~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~ 382 (481)
T PLN02822 308 DIITAAMGHAL-ATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHK 382 (481)
T ss_pred eEEEecchhhh-hhCC---eEEEcC-HHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 89999999999 5665 999987 788887664332 2333334444444333332 224466777788888888
Q ss_pred HHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-------HHHHHHHHHhcC-ccccccccCCccccccC
Q psy12791 272 FLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-------AEETRIFLESLL-IFRCAESLGGIESLADL 343 (393)
Q Consensus 272 ~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~ 343 (393)
.|++.+++. +..+ ..+.++.+.+++. ....+.+.+.+- ..++.+..+.... ...
T Consensus 383 ~L~~~~g~~-~~~~----------------~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~-~~~ 444 (481)
T PLN02822 383 GLSDIPGLS-IGSN----------------TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRST-LDK 444 (481)
T ss_pred HHHhcCCcc-cCCC----------------CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCC-cCC
Confidence 887654432 1111 1256777887421 122455666653 4455544332100 000
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+..+..+|++++..+++++++.+.++|+++.
T Consensus 445 -----------------~~~~~~lRi~is~~~t~edI~~~~~~l~~~~ 475 (481)
T PLN02822 445 -----------------CRLPVGIRLFVSAGHTESDILKASESLKRVA 475 (481)
T ss_pred -----------------CCCCCcEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 0113579999999999999999999987654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=200.99 Aligned_cols=284 Identities=13% Similarity=0.077 Sum_probs=192.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...++++.+++++|.++.+++++|++++ .++..++++||.|++++|+|++. ...++..|+++..++..|++++
T Consensus 77 ~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~----~~~~~~~g~~~~~~~~~d~~~l 152 (385)
T TIGR01825 77 LRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASI----IDGLRLTKATKKIYKHADMDDL 152 (385)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHH----HHHHHhcCCceEEeCCCCHHHH
Confidence 345788888899888988889999998886 67777889999999999999853 3344567888877776678777
Q ss_pred HhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---------CCCCCcCcEEEEcc
Q psy12791 137 IKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---------KSLPWGVDIVLYSL 203 (393)
Q Consensus 137 ~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---------~~~~~~~di~~~S~ 203 (393)
++.+. +++++|++++++||||.+.|+++|.++|+++ |+++|+||+|+.+... .....+.++++.|+
T Consensus 153 ~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 231 (385)
T TIGR01825 153 DRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERY-GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTL 231 (385)
T ss_pred HHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHh-CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEec
Confidence 77664 3688999999999999999999999999999 9999999999865432 11224678999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
||++ |.+ +||++++ +++++.+..... ..++...+..+..+...++. .....++..++.+.+.+.|+.. +
T Consensus 232 sK~~-~~~---gG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 305 (385)
T TIGR01825 232 SKAI-GVV---GGYAAGH-KELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-G 305 (385)
T ss_pred cHHh-hcC---CCEEecC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9999 454 4999886 788887765432 22333334433333333322 1234455556667777777653 2
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
+. +..+ .++++.+.+ +.......+.+.+...++.+..++..+.
T Consensus 306 ~~-~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~L~~~gi~v~~~~~~~~------------------ 348 (385)
T TIGR01825 306 YD-TGGS-----------------ETPITPVVI-GDEKAAQEFSRRLFDEGIFAQSIVFPTV------------------ 348 (385)
T ss_pred CC-CCCC-----------------CCCEEEEEE-CCHHHHHHHHHHHHHCCcEEcccCCCCC------------------
Confidence 21 1111 134566666 3333445565555433444322111000
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......||++++...++++++.+.++++++.
T Consensus 349 --~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 349 --PRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred --CCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 0124789999999999998888888887653
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=201.71 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=161.7
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-
Q psy12791 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL- 130 (393)
Q Consensus 53 y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~- 130 (393)
+.+...+...++|+.+|+++|.++.+++++|+.++ .++.+++++||+|+++.++|.+.+ ..++..|++++.++.
T Consensus 57 ~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~----~~~~~~G~~~~~v~~~ 132 (387)
T PRK09331 57 LDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSY----VAAERAGLNVREVPKT 132 (387)
T ss_pred cccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHH----HHHHHcCCEEEEEeCc
Confidence 33334567899999999999998777766666677 777888899999999999988643 235778999999987
Q ss_pred -C-----CHHHHHhhcC-------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC-CCCcC
Q psy12791 131 -R-----KIENLIKYIK-------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS-LPWGV 196 (393)
Q Consensus 131 -~-----d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~-~~~~~ 196 (393)
+ |++++++.+. +++++|++++|+|+||.+.|+++|.++|+++ |+++++|++|+.+..... ...++
T Consensus 133 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~-g~~livD~a~~~g~~~~~~~~~g~ 211 (387)
T PRK09331 133 GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEY-GIPFLLNGAYTVGRMPVDGKKLGA 211 (387)
T ss_pred cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHc-CCEEEEECCcccCCcCCCHHHcCC
Confidence 2 6888888875 2689999999999999999999999999999 999999999997643222 23578
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--------cCCCCCHHHHHHHHhccC---CHHHHHHHHHHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--------MGVVPSPFDCWLVTRGLK---TLPCRLKEHERG 265 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 265 (393)
|+++.|+||++++++ ++||++++ +++++.+...... ++....+.....+...++ ....++++..++
T Consensus 212 D~~~~s~~K~l~~~~--~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~ 288 (387)
T PRK09331 212 DFIVGSGHKSMAASA--PSGVLATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKK 288 (387)
T ss_pred CEEEeeCcccccCCC--CEEEEEEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996444 59999997 7777766443211 122222111221222222 222345556677
Q ss_pred HHHHHHHHhhCCCcc
Q psy12791 266 SIEVAKFLESHPCVK 280 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~ 280 (393)
++++.+.|+++++++
T Consensus 289 ~~~l~~~L~~l~g~~ 303 (387)
T PRK09331 289 ARWFVDELEKIEGFK 303 (387)
T ss_pred HHHHHHHHhcCCCEE
Confidence 788888898877654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=202.13 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=192.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC--CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS--AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~ 134 (393)
.+...+|++++|+++|.++++++++|++++ .++..+.. +++.|+.....|.+ ....++..|+++..++..|++
T Consensus 89 ~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s----~~~~~~~~g~~~~~~~~~d~~ 164 (402)
T TIGR01821 89 NIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHAS----MIEGIRHSGAEKFIFRHNDVA 164 (402)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHH----HHHHHHHcCCeEEEECCCCHH
Confidence 467889999999999988899999999986 55555543 67766666555654 223345678888777777777
Q ss_pred HHHhhcC---C-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCCCcCcEEEE
Q psy12791 135 NLIKYIK---P-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLPWGVDIVLY 201 (393)
Q Consensus 135 ~l~~~l~---~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~~~~di~~~ 201 (393)
++++.++ + ++++|++++|+||+|.+.|+++|.++|+++ ++++|+||+|+.+.+.. ......|++++
T Consensus 165 ~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~ 243 (402)
T TIGR01821 165 HLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKY-GALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEG 243 (402)
T ss_pred HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHc-CCEEEEeCcccccccCCCCCccchhccCCCCCeEEEE
Confidence 7777664 2 578999999999999999999999999999 99999999998543211 01123589999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
||||.+ |.+| ||++++ +++++.++..... +....++..+..+...++. .....++..++...+.+.|+.+
T Consensus 244 t~sKa~-g~~G---G~i~~~-~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (402)
T TIGR01821 244 TLAKAF-GVVG---GYIAAS-RKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL 318 (402)
T ss_pred echhhh-ccCC---ceeecC-HHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 5654 898886 7888877644332 2333455555544444432 2333445556777778878754
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
++. + .+. .++++.+.+ ++......+.+.+. ..++.+..... |. .
T Consensus 319 -g~~-~-~~~----------------~~~i~~i~~-~~~~~a~~~~~~L~~~~Gi~v~~~~~------p~------~--- 363 (402)
T TIGR01821 319 -GIP-V-IPN----------------PSHIVPVII-GDAALCKKVSDLLLNKHGIYVQPINY------PT------V--- 363 (402)
T ss_pred -CCC-c-CCC----------------CCCEEEEEe-CCHHHHHHHHHHHHhcCCEEEEeECC------CC------C---
Confidence 221 1 111 246777777 44445556666653 32443332111 10 0
Q ss_pred hHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.....+||+|++..+++++++.+.++|+++.
T Consensus 364 -----~~g~~~lRis~~~~~t~edi~~~~~~l~~~~ 394 (402)
T TIGR01821 364 -----PRGTERLRITPTPAHTDKMIDDLVEALLLVW 394 (402)
T ss_pred -----CCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0113689999999999999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=202.79 Aligned_cols=285 Identities=16% Similarity=0.177 Sum_probs=192.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC--CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCH
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS--AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKI 133 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~ 133 (393)
+++...+|+++||+++|.++++++++|+++. .++..+.. +++.|+.....|.+. ...++..+.++..++..|+
T Consensus 89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~----~~~~~~~~~~~~~~~~~d~ 164 (407)
T PRK09064 89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASM----IEGIRRSRCEKHIFRHNDV 164 (407)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHH----HHHHHHcCCcEEEECCCCH
Confidence 4678899999999999988899999999885 55554443 676666665556542 2234556778877887788
Q ss_pred HHHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-C--------CCCCcCcEEE
Q psy12791 134 ENLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-K--------SLPWGVDIVL 200 (393)
Q Consensus 134 ~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~--------~~~~~~di~~ 200 (393)
+++++.++ +++++|++++++||+|.+.|+++|.++|+++ |+++|+||+|+.+.+. . ......|+++
T Consensus 165 ~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~-~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~ 243 (407)
T PRK09064 165 AHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKY-NALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIE 243 (407)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHc-CCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEE
Confidence 88877775 4689999999999999999999999999999 9999999999854321 1 1112358999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhh
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~ 275 (393)
+||||.+ |++| ||++++ +++++.++.....+ ....++..+..+...++.+ ...+++..++.+.+.+.|++
T Consensus 244 ~t~sKa~-g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~ 318 (407)
T PRK09064 244 GTLAKAF-GVMG---GYIAGS-AALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDA 318 (407)
T ss_pred Eecchhh-hccC---ceEecC-HHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 5665 898887 78888776543322 2334454444444444332 22356666777788888875
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCCh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPK 354 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~ 354 (393)
. ++. + .+ ..++++.+.+ ++......+.+.+. ..++.+.... .|. .
T Consensus 319 ~-g~~-~-~~----------------~~~~iv~i~~-~~~~~~~~l~~~L~~~~gi~v~~~~------~p~------~-- 364 (407)
T PRK09064 319 A-GIP-V-MP----------------NESHIVPVMV-GDPEKCKKASDMLLEEHGIYVQPIN------YPT------V-- 364 (407)
T ss_pred c-CCC-C-CC----------------CCCCEEEEEe-CCHHHHHHHHHHHHHhCCEEEeeEC------CCC------C--
Confidence 3 111 1 11 1246777777 44444555665542 2244333211 010 0
Q ss_pred hhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 355 ETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 355 ~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.....++|+|++..+++++++.+.++|+++.
T Consensus 365 ------~~~~~~lRis~~~~~t~edi~~l~~~l~~~~ 395 (407)
T PRK09064 365 ------PRGTERLRITPTPFHTDEMIDHLVEALVEVW 395 (407)
T ss_pred ------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0013689999999999999999999998764
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=199.51 Aligned_cols=311 Identities=15% Similarity=0.157 Sum_probs=201.3
Q ss_pred CCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCc---EE-EeccHHHHH-HHHHHhcCCCCeEEEcCC
Q psy12791 31 PPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKH---GL-CYSSGLGAV-TAVTHLLSAGDHIISGDD 105 (393)
Q Consensus 31 ~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~---~i-~~~~G~~al-~~~~~~~~~gd~vl~~~~ 105 (393)
.|..+++.+.+++.... .+....+. ....++|+.+|+++|.++ .+ ++++|++++ .++..++.++|++++..+
T Consensus 6 ~p~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~ 82 (355)
T TIGR03301 6 GPLSTSATVRDAMLVDW--CHWDSEFN-DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLIN 82 (355)
T ss_pred CCCCCCHHHHHHhhhhc--cCCCHHHH-HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECC
Confidence 35555666666654421 11111122 567899999999999862 45 456777778 677777788887665554
Q ss_pred -CccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 106 -VYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 106 -~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
.|+. .+...++..|.+++.++.+ |++++++.+.+ +++++++++++||||.+.|+++|.++|+++ ++++
T Consensus 83 ~~~~~---~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~-~~~l 158 (355)
T TIGR03301 83 GAYGE---RLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSH-GAVL 158 (355)
T ss_pred Cchhh---HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHc-CCEE
Confidence 4442 2456677889999988764 78999998864 456788899999999999999999999999 9999
Q ss_pred EEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH---------------H--hcCCC
Q psy12791 178 VLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ---------------N--SMGVV 239 (393)
Q Consensus 178 ivDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~---------------~--~~~~~ 239 (393)
|+|++++.+....++ ..+.|++++|++|+++|++| +||++++ +++++.+.... . .....
T Consensus 159 ivD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 235 (355)
T TIGR03301 159 IVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPG--FGFVIAR-RDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFT 235 (355)
T ss_pred EEEeccccCCcccchhhcCccEEEecCCcccccCCc--eeEEEEC-HHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCC
Confidence 999988765432222 24789999999999878888 7999998 77777654100 0 00112
Q ss_pred CCHHHHHHHHhccC------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 240 PSPFDCWLVTRGLK------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 240 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
.+......+...++ .+...+++..++.+.+.+.|+++ ++. +..+. . ...+.++++.+++
T Consensus 236 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~~~~--~-----------~~~~~~~~~~~~~ 300 (355)
T TIGR03301 236 PPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQ-PLLPE--R-----------WQSPIIVSFLYPD 300 (355)
T ss_pred CcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCe-eecCC--C-----------CCCCcEEEEECCC
Confidence 23222222222221 14445666677778888888765 332 21111 0 0112356787742
Q ss_pred C-HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 314 G-AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 314 ~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
. ......+.+.+...++.+..|+.. ..++||++++..+++++++.+.++|+++
T Consensus 301 ~~~~~~~~~~~~l~~~gi~i~~~~~~------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 301 DPDFDFDDFYQELKERGFVIYPGKLT------------------------LADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred CCcchHHHHHHHHHHCCEEEECCccc------------------------cccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1 123345556565445554443210 0268999998888999999999998764
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=197.66 Aligned_cols=303 Identities=20% Similarity=0.199 Sum_probs=202.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
..+...++++.+++++|.++.+++++|++++ .++..+ +++||+|+++.++|.++ ...+...|++++.++.+
T Consensus 16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT----ANAILLLGATPVFVDIDPDT 91 (352)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH----HHHHHHcCCeEEEEecCCCc
Confidence 3578999999999999998899999999998 666666 58999999999999864 34456789999988764
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CCCcCcEEEEccc--
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LPWGVDIVLYSLT-- 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~~~~di~~~S~s-- 204 (393)
|++++++.+++++++|+++| ++|.+.|+++|.++|+++ |+++|+|++|+.+..... .....|+.+.|++
T Consensus 92 ~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~-~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 167 (352)
T cd00616 92 YNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRH-GLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT 167 (352)
T ss_pred CCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHc-CCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence 68899999988899999865 689999999999999999 999999999986543221 2223588888877
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhc---------------CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSM---------------GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (393)
|+++ .+ .+|+++++++++.++++...... ....++..+.+....++.+....++..++.+.+
T Consensus 168 K~~~-~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~ 244 (352)
T cd00616 168 KNLT-TG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERY 244 (352)
T ss_pred CCCc-cc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9983 32 37888887778888776544311 112345555555555566666777778888888
Q ss_pred HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCcccc-
Q psy12791 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEM- 347 (393)
Q Consensus 270 ~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~- 347 (393)
.+.|+.++++.... +. +.. .....++.|.+++. ......+.+.|...++.... .+.........
T Consensus 245 ~~~L~~~~g~~~~~-~~-~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~--~~~~~~~~~~~~ 310 (352)
T cd00616 245 KELLADLPGIRLPD-VP-PGV----------KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRV--HYPPLHHQPPYK 310 (352)
T ss_pred HHHhcCCCCccCCC-CC-CCC----------ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeee--ecCccccCHhhh
Confidence 99998776654221 11 000 01135677777420 12333444444333332211 11100000000
Q ss_pred -----cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 348 -----THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 348 -----~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
.....+.... ...+.|||+++..+++++++.+.++|+
T Consensus 311 ~~~~~~~~~~~~a~~----~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 311 KLLGYPPGDLPNAED----LAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hccCCCcCCChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0001111111 125799999999999999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=202.64 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=200.1
Q ss_pred chHHHHHHHHHHHhCCCc--EEEeccHHH-HH-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAKH--GLCYSSGLG-AV-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~--~i~~~~G~~-al-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...+++|+.+|+++|++. .|++++|++ ++ .++..+ +++||+|++.+..|++....+....+..|++++.++.+
T Consensus 43 ~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~ 122 (371)
T PF00266_consen 43 EILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD 122 (371)
T ss_dssp HHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG
T ss_pred HHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 456789999999999874 666555554 67 666666 78999999999999998877888888999999888763
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK 205 (393)
|++++++.+++++++|++++.+|.||...|+++|.++|+++ |+++++|.+++.+.....+. .++|+++.|.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~-~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K 201 (371)
T PF00266_consen 123 PGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEY-GALLVVDAAQSAGCVPIDLDELGADFLVFSSHK 201 (371)
T ss_dssp TTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHT-TSEEEEE-TTTTTTSS--TTTTTESEEEEESTS
T ss_pred ccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhcc-CCceeEechhccccccccccccccceeeecccc
Confidence 78999999999999999999999999999999999999999 99999999999876544433 588999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhccCC-----HHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS---------------------MGVVPSPFDCWLVTRGLKT-----LPCRL 259 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~-----~~~~~ 259 (393)
++|++| +|+++.+ +++.++++..... .+++.+......+...++. +....
T Consensus 202 -l~gp~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~ 277 (371)
T PF00266_consen 202 -LGGPPG--LGFLYVR-PEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIR 277 (371)
T ss_dssp -TTSSST--EEEEEEE-HHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCc--hhhheeh-hhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccch
Confidence 668999 8999998 7777777321110 1112222222222222222 22334
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCcc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
++..+..+.+.+.|..++.+. +..|. .. ...++++.|.+++ +.......++.. ++.+..|..+
T Consensus 278 ~~~~~l~~~~~~~l~~~~~~~-~~~~~---~~---------~~~~~i~~~~~~~~~~~~~~~~L~~~---~I~~~~G~~~ 341 (371)
T PF00266_consen 278 ERIRELAEYLREALEELPGIE-VLGPD---DE---------PRRPSIVSFNLPGSDADDVVKYLEER---GIAVSTGSAC 341 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTTEE-ESSSS---CG---------GBGTTEEEEEETTSSHHHHHHHHHHH---TEEEEESTTT
T ss_pred hhhhhHHHHHHhhhhcCCcee-Eeeec---cc---------ccccceEEEeecCCCHHHHHHHHhhc---CEEEeccCcc
Confidence 555566777788888777654 22221 00 1236889999964 344444444433 4555545443
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHH
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l 383 (393)
.... .... +. .+.||+|++.+++++++++|
T Consensus 342 ~~~~------------~~~~--~~-~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 342 AGPS------------LDIL--GM-GGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp CHHH------------HHHH--HT-TTEEEEE-GTTSSHHHHHHH
T ss_pred cHHH------------HHHh--CC-CCEEEEeccCCCCHHHHhhC
Confidence 3110 0000 11 38999999999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=202.84 Aligned_cols=301 Identities=19% Similarity=0.167 Sum_probs=188.6
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
+..+++|+.+|+++|.+ +.+++++|++ ++ .++.++ .++||+|++++++|+++...+.. ++..|++++.++.+
T Consensus 49 ~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~ 127 (404)
T PRK14012 49 EAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQ 127 (404)
T ss_pred HHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccC
Confidence 45678899999999986 5566665554 56 554443 37899999999999876544433 35569999988764
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++++++++++|++++++||||.++|+++|.++|+++ |+++++|++++.+...... ..++|+++.|++|
T Consensus 128 ~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~-g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K 206 (404)
T PRK14012 128 SNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRER-GIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK 206 (404)
T ss_pred CCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHc-CCEEEEEcchhcCCcccCcccCCCCEEEEehhh
Confidence 78999999999999999999999999999999999999999 9999999999876543222 3478999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHh
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~ 274 (393)
.+ |+.| .|+++.+++.. .++..... .................+ .......++..+..+.+.+.|+
T Consensus 207 ~~-gp~g--~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 282 (404)
T PRK14012 207 IY-GPKG--IGALYVRRKPR-VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIK 282 (404)
T ss_pred cc-CCCc--eEEEEEecCCC-CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 87 6766 88888773322 22211000 001111111111111111 1223334445555666677777
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCCh
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK 354 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~ 354 (393)
.++.+... ..... .......++|.+. +. +.+...++ ++.++.|..+......+.
T Consensus 283 ~~~~i~~~--~~~~~----------~~~~~~~~~~~~~-~~---~~~~~~l~--~~~i~~g~~~~~~~~~~~-------- 336 (404)
T PRK14012 283 DIEEVYLN--GDLEQ----------RVPGNLNVSFNYV-EG---ESLIMALK--DLAVSSGSACTSASLEPS-------- 336 (404)
T ss_pred cCCCEEEe--CCccc----------cCCCEEEEEEeCc-CH---HHHHHhCC--CeEEEchhhhCCCCCCCC--------
Confidence 66655311 11000 0001123555542 22 23555554 344444433221110000
Q ss_pred hhHhhcCC----CCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 355 ETRDALGI----TDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 355 ~~~~~~g~----~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......+. ..+.||+|++..+++++++.+.++|+++.
T Consensus 337 ~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~ 377 (404)
T PRK14012 337 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSI 377 (404)
T ss_pred HHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 00111232 35899999999999999999999998764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=193.95 Aligned_cols=272 Identities=14% Similarity=0.094 Sum_probs=178.5
Q ss_pred CchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHhcCCCCeEEEcC---CCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 58 NPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHLLSAGDHIISGD---DVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~~~~gd~vl~~~---~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
.+...+|++.+|+++|.+ +.+++++|.+++ .++.+++++||+|+++. |+|. .+...++..|+++... .
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~----s~~~~~~l~ga~~~~~--~ 126 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHP----SIPRSCKLAGAEYFES--D 126 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCch----hHHHHHHHcCCEEecc--C
Confidence 367889999999999984 555555556677 77788899999999753 5666 4667778888886433 4
Q ss_pred CHHHHHhhcCCCCcEEEEecCCCCccccc---CHHHHHHHHHhCCCcEEEEeCccCccccc---C-C-CCCcCcEEEEcc
Q psy12791 132 KIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFLTAYYQ---K-S-LPWGVDIVLYSL 203 (393)
Q Consensus 132 d~~~l~~~l~~~~~~v~l~~p~nptG~~~---~~~~l~~l~~~~~~~~livDea~~~~~~~---~-~-~~~~~di~~~S~ 203 (393)
+++++.. .+++++|+++ ++|++|.++ ++++|.++|+++ ++++++||+|+.+... . + ...+.|+++.|+
T Consensus 127 ~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~-~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~ 202 (346)
T TIGR03576 127 ELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSK-EAIVLVDDASGARVRRLYGQPPALDLGADLVVTST 202 (346)
T ss_pred CHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHc-CCEEEEECCccccccccCCCCCHHHcCCcEEEecc
Confidence 6666533 2467888885 468999995 588888899999 9999999999976421 1 1 123568999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhCCCcce
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESHPCVKG 281 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (393)
||+ ++|+|+||++++ +++++.++.....+..+.++..+..+...++.. ...++.+.++...+.+.++.+ .
T Consensus 203 SKa---laG~r~G~v~~~-~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~---~- 274 (346)
T TIGR03576 203 DKL---MDGPRGGLLAGR-KELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL---N- 274 (346)
T ss_pred chh---ccccceEEEEeC-HHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC---C-
Confidence 994 577899999998 889998887766555445555655555555442 223344444544455555421 1
Q ss_pred EeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 282 VLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 282 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
+ .+. ..+++++.+++. .+....++. ..++.+.+|..+.
T Consensus 275 ~-~~~----------------~~~f~~~~~~~~~~~~~~~~ll~---~~gV~v~~~~~f~-------------------- 314 (346)
T TIGR03576 275 V-ERT----------------PTGFVIKGVEEEKLIEIGLDLLR---NYGIITITAVGMP-------------------- 314 (346)
T ss_pred C-CcC----------------CCeEEEEeCCCCCHHHHHHHHHH---hCCEEEeCCcccC--------------------
Confidence 1 111 135788888421 233443433 3344444433220
Q ss_pred cCCCCCeEEEEecCCC-hHHHHHHHHHHHHH
Q psy12791 360 LGITDNLVRLSVGVEG-YTDLIADLDQALRK 389 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~-~~~~i~~l~~al~~ 389 (393)
..++++|+|++... +..+.+.+.++|++
T Consensus 315 --~~~~~vRis~~~~~~~~~~~~~~~~al~~ 343 (346)
T TIGR03576 315 --GASKTLRFDLAAKDAERIGDDYLVEAVKD 343 (346)
T ss_pred --CCCCeEEEEEecChHHhcCHHHHHHHHHh
Confidence 01579999999765 33345666666654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=200.11 Aligned_cols=315 Identities=16% Similarity=0.120 Sum_probs=203.4
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC---cEE-EeccHHHHH-HHHHHhcCCCCeEEEc
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK---HGL-CYSSGLGAV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~---~~i-~~~~G~~al-~~~~~~~~~gd~vl~~ 103 (393)
..-|..+++.+.+++.... . +....+. ....++|+.+++++|.+ +.+ ++++|+.++ .++..+..+||.|+++
T Consensus 10 ~pgP~~~~~~~~~a~~~~~-~-~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~ 86 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDW-G-SWDDDFN-ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVP 86 (368)
T ss_pred cCCCCCCCHHHHHHhCCCC-C-CCChHHH-HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence 3456666666666654442 1 1111122 36789999999999985 334 456677788 7778888899999988
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcE
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 176 (393)
.++|.+.. +...++..|++++.++.+ |++++++.+.+ ++++|++++|+||||...|+++|.++|+++ +++
T Consensus 87 ~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~-~~~ 163 (368)
T PRK13479 87 DNGAYGAR--IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRH-GKR 163 (368)
T ss_pred eCCchHHH--HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHc-CCE
Confidence 87765432 346678889999988774 68999988854 467899999999999999999999999999 999
Q ss_pred EEEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc--------------C---C
Q psy12791 177 LVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--------------G---V 238 (393)
Q Consensus 177 livDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--------------~---~ 238 (393)
+++|+++..+....++ ..+.|+++.|++|++.|++| +||++++ +++++.+......+ + .
T Consensus 164 livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (368)
T PRK13479 164 LIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPG--FGFVIAR-RSELEACKGNSRSLSLDLYDQWAYMEKTGQWRF 240 (368)
T ss_pred EEEEcccccCCccccccccCceEEEecCccccccCCC--ceEEEEC-HHHHHHhhcCCCCeeecHHHHHhhhcccCCCCC
Confidence 9999877654322222 24689999999999878999 7999998 77777654321100 0 0
Q ss_pred CCCHHHHH---HHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 239 VPSPFDCW---LVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 239 ~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
..+..... .++..+ ..+..+.++..+.+..+.+.|+.+ ++. +..+. . ...+.++.|.++
T Consensus 241 t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---~----------~~~~~~~~~~~~ 305 (368)
T PRK13479 241 TPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFE-PLLDA---E----------IQSPIIVTFHAP 305 (368)
T ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCc---h----------hcCceEEEEECC
Confidence 11211111 111111 123445566677777788888765 222 11111 0 001234555553
Q ss_pred CCH-HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 313 GGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 313 ~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+ ...+.+.+.+...++.+..|... ..+++|+|...++++++++.+.++|+++.
T Consensus 306 ~~~~~~~~~l~~~L~~~gi~v~~g~~~------------------------~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 306 ADPAYDFKEFYERLKEQGFVIYPGKLT------------------------QVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred CCCCcCHHHHHHHHHHCCEEEecCCCC------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 211 23345666665556655443110 13689999866778888888888887653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=197.48 Aligned_cols=284 Identities=17% Similarity=0.143 Sum_probs=193.1
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC--CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS--AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~ 134 (393)
.+...+|+++||+++|.+.+++++||+++. .++..+.. +||.|+.....|+++.. .++..|.++..++..|++
T Consensus 89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~----~~~~~g~~~~~~~~~d~~ 164 (406)
T PRK13393 89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIE----GIRHSRAEKRIFRHNDPA 164 (406)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHH----HHHHcCCeEEEeCCCCHH
Confidence 346789999999999988999999999986 55554544 67877777777765432 334567888888877877
Q ss_pred HHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-C--------CCCCcCcEEEE
Q psy12791 135 NLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-K--------SLPWGVDIVLY 201 (393)
Q Consensus 135 ~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~--------~~~~~~di~~~ 201 (393)
++++.+. +++++|++++++|++|.+.|+++|.++|+++ ++++++||+|+.+.+. . ......|++++
T Consensus 165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~-~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~ 243 (406)
T PRK13393 165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKH-GAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEG 243 (406)
T ss_pred HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHc-CCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEE
Confidence 7777664 3578999999999999999999999999999 9999999999854421 1 11123578899
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhC
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~ 276 (393)
||+|.+ |.+| ||++++ +++.+.++..... ++...++..+..+...++.+ ...+++..++.+.+.+.|+..
T Consensus 244 tlsKa~-g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (406)
T PRK13393 244 TLAKAF-GVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA 318 (406)
T ss_pred eCchhh-cccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 5654 898876 7888877654432 23344555444444444322 223445556677778878653
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
+...+ ++.+.++.+.+ ++......+.+.+.. .++.+..+.. |..
T Consensus 319 -g~~~~------------------~~~~~i~~v~~-~~~~~~~~l~~~L~~~~Gi~v~~~~~------p~~--------- 363 (406)
T PRK13393 319 -GIPHL------------------PNPSHIVPVMV-GDPVLCKQISDELLDRYGIYVQPINY------PTV--------- 363 (406)
T ss_pred -CCCcC------------------CCCCCeEEEEe-CCHHHHHHHHHHHHHhCCEEEEeECC------CCC---------
Confidence 21101 11256777766 444455666666543 2444433211 100
Q ss_pred hHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+.||+|++..+++++++.+.++|+++.
T Consensus 364 -----p~g~~~iRis~~~~~t~edid~l~~~l~~~~ 394 (406)
T PRK13393 364 -----PRGTERLRITPSPLHTDADIEHLVQALSEIW 394 (406)
T ss_pred -----CCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 0013689999999999999999999998763
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=184.40 Aligned_cols=271 Identities=18% Similarity=0.166 Sum_probs=183.2
Q ss_pred chHHHHHHHHHHHhC---------CCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCCcEEE
Q psy12791 59 PTRRNLERCIASLEE---------AKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIGLEVD 126 (393)
Q Consensus 59 ~~~~~lr~~la~~~~---------~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~v~ 126 (393)
.+...+|+++|+++. -++.+++++|+++ . .+...+..|||.-++|.|.|++ +..-++ +.|++++
T Consensus 121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~g----fdrdl~~rTgveiv 196 (471)
T KOG0256|consen 121 HGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPG----FDRDLRWRTGVEIV 196 (471)
T ss_pred cCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCc----ccccceeccCceEE
Confidence 466789999999864 1357888888765 6 5566788999999999999997 444444 6789999
Q ss_pred eeCCC-------CHHHHHhhcC------CCCcEEEEecCCCCcccccCHHH---HHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 127 FVDLR-------KIENLIKYIK------PNTKMVWIENPTNPLMTVFDVKA---ISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 127 ~~~~~-------d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~~~~---l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
.+.+. +.+.+++++. .+++.|+++||+||.|++++.++ +..++.++ ++.+|+||+|+..++..
T Consensus 197 pv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIya~sVF~~ 275 (471)
T KOG0256|consen 197 PVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIYAGSVFDK 275 (471)
T ss_pred EEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhhcccccCc
Confidence 88774 4677777664 35789999999999999999665 45566677 99999999999866542
Q ss_pred C-----------C--CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH--
Q psy12791 191 S-----------L--PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL-- 255 (393)
Q Consensus 191 ~-----------~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (393)
+ . ..+..-++.|+||-+ |+||+|+|.++..++.+....+++..+. ..++..+.++..-+..-
T Consensus 276 ~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f 352 (471)
T KOG0256|consen 276 SEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEF 352 (471)
T ss_pred cCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHH
Confidence 2 1 123347888999999 7999999999999888888777666532 34555555555444431
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc-----CC-HHHHHHHHHh
Q psy12791 256 -----PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN-----GG-AEETRIFLES 324 (393)
Q Consensus 256 -----~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~ 324 (393)
....+++.....++.+.|++. .+|=++ ++.|-++|+.++ .+ ..+.+.+..-
T Consensus 353 ~~~yl~en~~Rl~~rh~~~~~gLk~l------gI~cl~------------s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i 414 (471)
T KOG0256|consen 353 TREYLRENNKRLRIRHRYIVEGLKAL------GIPCLK------------SNAGLFCWVDLRKLLTSLTFEGELELWERI 414 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhc------CCceee------------cCCeeEEEEEhHHhcCcCChHHHHHHHHHH
Confidence 222333334444555555542 222222 223566788764 13 3344444444
Q ss_pred cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~ 376 (393)
+...++.+++|..+. |. .+||+|++|.-...
T Consensus 415 ~~~vklnlSpG~s~~--C~-------------------EpGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 415 LDNVKLNLSPGSSCH--CH-------------------EPGWFRVCFANMSE 445 (471)
T ss_pred HHhhccccCCCCcce--ec-------------------CCCeEEEEeccCCH
Confidence 444577788887642 11 17999999975543
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=198.51 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=145.9
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEE-eccHHHHH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLC-YSSGLGAV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~-~~~G~~al-~~~~~~~~~gd~vl~~~ 104 (393)
+..|...++.+.+++..... .+ .+......++++++.+++++|.+ +.++ .++|+.++ .++..++++||+|++++
T Consensus 14 ~pGP~~~~~~V~~a~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~ 91 (401)
T PLN02409 14 VPGPVNIPERVLRAMNRPNE-DH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR 91 (401)
T ss_pred cCCCCCCCHHHHHHhcCCCC-CC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 34455555556665543311 11 11112245678888899999986 3444 45555557 66677889999999999
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC----CCcEEEEecCCCCcccccCHHHHHHH--HHhCC
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP----NTKMVWIENPTNPLMTVFDVKAISAV--VKQHP 173 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l--~~~~~ 173 (393)
+.|.+. .+...++..|++++.++.+ |++++++.+++ ++++|++++++||||.++|+++|.++ |+++
T Consensus 92 ~~~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~- 168 (401)
T PLN02409 92 IGQFSL--LWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQH- 168 (401)
T ss_pred CCchhH--HHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhcc-
Confidence 888753 2456778889999988764 68899998875 68999999999999999999999999 9999
Q ss_pred CcEEEEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 174 DILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 174 ~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
|+++++|++++.+...... ..++|+++.|.+||++|++| +||++.+ +++++++.
T Consensus 169 g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G--~G~l~~~-~~~~~~~~ 223 (401)
T PLN02409 169 PALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTG--LGIVCAS-PKALEASK 223 (401)
T ss_pred CcEEEEEcccccCCccccccccCccEEEEcCccccCcCCC--cceeEEC-HHHHHHHh
Confidence 9999999999865543222 25789999999999987887 9999987 77777664
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=191.25 Aligned_cols=309 Identities=18% Similarity=0.152 Sum_probs=205.9
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
.+...++++.+++++|.++.+++++|++++ .++.++ +++||+|++++++|.++ ...+...|++++.++.+
T Consensus 30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~----~~~~~~~G~~~v~vd~d~~~~ 105 (376)
T TIGR02379 30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVST----ANAFVLRGAKIVFVDIRPDTM 105 (376)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH----HHHHHHcCCEEEEEecCCCcC
Confidence 366889999999999998888888888888 666666 78999999999999864 44456779999999875
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc--CCCCCcCcEEEEccc--c
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ--KSLPWGVDIVLYSLT--K 205 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~--~~~~~~~di~~~S~s--K 205 (393)
|++++++++++++++|+ |+||+|...++++|.++|+++ |++||+|++|+.+... .+...-.|+.+.||+ |
T Consensus 106 ~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~-~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K 181 (376)
T TIGR02379 106 NIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKH-QLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETK 181 (376)
T ss_pred CCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHC-CCEEEEECccccCCccCCcccCCCCCEEEEeCCCCC
Confidence 67889999988899987 667889999999999999999 9999999999876421 222222367777764 5
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHhc-------------------C--CCCCHHHHHHHHhccCCHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSM-------------------G--VVPSPFDCWLVTRGLKTLPCRLKEHER 264 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (393)
.+ .+|.++|+++++++++.++++..+..- | ..++..++++....++.+....++..+
T Consensus 182 ~l--~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~ 259 (376)
T TIGR02379 182 NY--TSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLA 259 (376)
T ss_pred cC--cccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55 345579999998899999987665411 1 113345566666677777777777777
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
+++...+.|..++.......|..+.... ..+ .++++.++. ....+.+.+.|+..++....+. ..+...+
T Consensus 260 ~~~~y~~~L~~~~~~~~~~~~~~~~~~~--------~~~-~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~-~p~~~~~ 328 (376)
T TIGR02379 260 TWQLYQDALKPLEEKGIIELPSIPNGCQ--------HNA-HMFYIKLKD-EDDRNELIKYLKEQEIMAVFHY-VPLHSSP 328 (376)
T ss_pred HHHHHHHHhccCCcCCeeeCCCCCCCCe--------eee-EEEEEEECC-cCCHHHHHHHHHHCCCCccccC-cCCCcch
Confidence 7777777776544211112222211100 001 345667732 1234566666655555543321 1111111
Q ss_pred cccc----CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 345 AEMT----HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 345 ~~~~----~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.... ....|..+. .....|.|-++..-++++++.+.++++++.
T Consensus 329 ~~~~~~~~~~~~p~~~~----~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 329 AGRYFGRFHGEDIYTTK----ESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred hHHhhCCCCCCChHHHH----HHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1000 011122211 225678888888889999999999998753
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=193.09 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=189.0
Q ss_pred chHHHHHHHHHHHhCCC---cEEEeccH-HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 59 PTRRNLERCIASLEEAK---HGLCYSSG-LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~---~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
...+++|+.+++++|++ +.|++++| +.++ .++..++.+||.+++..+.+.+. .+...++..|++++.++.+
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~--~~~~~a~~~g~~~~~v~~~~~ 112 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGA--RIVQIAEYLGIPHHVVDTGEV 112 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhH--HHHHHHHHcCCceEEEeCCCC
Confidence 45678899999999986 25666554 6668 66777778888876655544432 1345678889999988774
Q ss_pred ---CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 ---KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 ---d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++++.+.. ++++|.+++++||||..+|+++|.++|+++ |+++++|++++.+....++ ..+.|+++.|++|
T Consensus 113 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~-g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K 191 (363)
T TIGR02326 113 EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRH-GKVTIVDAMSSFGGIPIDIAELHIDYLISSANK 191 (363)
T ss_pred CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHc-CCEEEEEccccccCcccchhhcCccEEEecCcc
Confidence 78899988864 457888999999999999999999999999 9999999998865432222 2478999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHH------------Hh---cC---CCCCHHHHHHHHhccC------CHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQ------------NS---MG---VVPSPFDCWLVTRGLK------TLPCRLKE 261 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~------------~~---~~---~~~~~~~~~~~~~~~~------~~~~~~~~ 261 (393)
+++|++| +||++++ ++.++.+.... .. .+ ...+......+.+.++ .++.+.++
T Consensus 192 ~l~~p~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~ 268 (363)
T TIGR02326 192 CIQGVPG--FGFVIAR-QAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQR 268 (363)
T ss_pred ccccCCc--ceEEEEC-HHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 9988888 7999998 66666542100 00 00 0122222222222221 23445566
Q ss_pred HHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCcccc
Q psy12791 262 HERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESL 340 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~ 340 (393)
+.+.+..+.+.|+++ ++..+..+. ...+.+.+|.++.. ......+.+.+...++.++.|..+
T Consensus 269 ~~~~~~~l~~~L~~~-g~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~-- 331 (363)
T TIGR02326 269 YQQNQKTLVAGMRAL-GFEPLLDDE--------------IQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS-- 331 (363)
T ss_pred HHHHHHHHHHHHHHc-CCeeccCcc--------------cCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC--
Confidence 677777888888765 222111110 01123467777421 123445556665545555544210
Q ss_pred ccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 341 ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...++|+|+..+++.++++.+.++|+++.
T Consensus 332 ----------------------~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 332 ----------------------QVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred ----------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 14689999866778888899999888754
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=189.07 Aligned_cols=293 Identities=14% Similarity=0.092 Sum_probs=187.2
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC---------------eEEEcCCCccchHHHHHHhcccC
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD---------------HIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd---------------~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
++..+++++.+|+++|.++.+++++|++++ .++.+++++|| +|+++.|.|......+...+...
T Consensus 44 ~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~ 123 (363)
T TIGR01437 44 KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLG 123 (363)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhc
Confidence 466788999999999998887777778888 78888888888 89998866642100134566778
Q ss_pred CcEEEeeCCC---CHHHHHhhcCCCCcEEE-EecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCc
Q psy12791 122 GLEVDFVDLR---KIENLIKYIKPNTKMVW-IENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVD 197 (393)
Q Consensus 122 g~~v~~~~~~---d~~~l~~~l~~~~~~v~-l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~d 197 (393)
|+++++++.+ |+++++++++++|++++ +++|+||+|.+.|+++|.++|+++ |+++++|++|.... ......+.|
T Consensus 124 g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~-gi~vivD~a~~~~~-~~~~~~g~D 201 (363)
T TIGR01437 124 GGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEH-NLPLIVDAAAEEDL-QKYYRLGAD 201 (363)
T ss_pred CCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHc-CCeEEEECCCCCch-HHHHHcCCC
Confidence 9999998764 89999999999999766 578899999999999999999999 99999999998322 112235789
Q ss_pred EEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC-----HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS-----PFDCWLVTRG-LKTLPCRLKEHERGSIEVAK 271 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 271 (393)
+++.|+||++.|+ ++|+++.+ +++++.++......+.... ......+... .+......+...+++..+.+
T Consensus 202 ~~~~S~~K~l~gp---~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~ 277 (363)
T TIGR01437 202 LVIYSGAKAIEGP---TSGLVLGK-KKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE 277 (363)
T ss_pred EEEEeCCcccCCC---ceEEEEEc-HHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 9999999988544 68999986 7777765432221111000 0011111111 11111233344455667888
Q ss_pred HHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCC
Q psy12791 272 FLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351 (393)
Q Consensus 272 ~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~ 351 (393)
.|.+.+++.....+..... .-....++|......-....+.+.|+..+..+..- + +
T Consensus 278 ~L~~i~g~~~~~~~~~~~~----------~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r--------~----~-- 333 (363)
T TIGR01437 278 ALNTLKGVSASIVQDEAGR----------DIARAEIRFDESELGMTAADVVQALRQGEPAIYTR--------G----Y-- 333 (363)
T ss_pred HHhcCCCeEEEEecCCCCC----------cCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEe--------e----e--
Confidence 8888887654322110000 00112244544110112344444444322111100 0 0
Q ss_pred CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 352 ~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....+.+|+++...+ +++++.+.++|.++
T Consensus 334 ---------~~~~~~~~l~~~~~~-~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 334 ---------KANEGIIEIDPRSVT-GGQLDIIVERIREI 362 (363)
T ss_pred ---------eecCCeEEEEeecCC-HHHHHHHHHHHHHh
Confidence 123688999998755 88899999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=192.62 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhc----CCC-CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 60 TRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLL----SAG-DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~----~~g-d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
..+++|+.+|+++|.+ +.+++++|+++ + .++..+. .+| +.|++....|++....+ ..++..|++++.++.+
T Consensus 43 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~-~~~~~~G~~v~~v~~~ 121 (353)
T TIGR03235 43 AVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPI-RALERNGFTVTYLPVD 121 (353)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHH-HHHHhcCCEEEEEccC
Confidence 3578999999999986 67888888765 6 5555554 356 78888888887655444 3346679999998874
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK 205 (393)
|++++++.+++++++|++++++||||.+.|+++|.++|+++ |+++++|++++.+.....+. .++|+++.|++|
T Consensus 122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~-~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K 200 (353)
T TIGR03235 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAH-EAFFHVDAAQVVGKITVDLSADRIDLISCSGHK 200 (353)
T ss_pred CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHc-CCEEEEEchhhcCCccccccccCCCEEEeehhh
Confidence 78999999988899999999999999999999999999999 99999999998765533333 478999999999
Q ss_pred cccCCCCceEEEEEecChHHHHH--HHHHHH-------hcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQAR--LKFLQN-------SMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 272 (393)
++ |++| +|+++.+ ++.... ++.... ......+......+...+ +..+.+.+++.+....+.+.
T Consensus 201 ~~-gp~g--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~ 276 (353)
T TIGR03235 201 IY-GPKG--IGALVIR-KRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDA 276 (353)
T ss_pred cC-CCCc--eEEEEEc-cCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 97 7988 9999988 443221 111000 001112111111111222 22334455556666666666
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSI 352 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~ 352 (393)
|+. ++++.+..+. ....+++.|.+++ ...+.+.+.|+. ++.++.|..|+.... .
T Consensus 277 l~~-~g~~~~~~~~--------------~~~~~i~~~~~~~--~~~~~v~~~L~~-~i~v~~g~~~~~~~~--------~ 330 (353)
T TIGR03235 277 LQT-LGVKLNGDPA--------------ETIPHILNFSIDG--VNSEALIVNLRA-DAAVSTGSACSSSKY--------E 330 (353)
T ss_pred hcc-CCeEEeCCcc--------------cccCCEEEEEeCC--cCHHHHHHHHhC-CeEEEchhhcCCCCC--------C
Confidence 655 4443221111 1124678888754 123344444443 567777766532211 1
Q ss_pred ChhhHhhcCCC----CCeEEEEe
Q psy12791 353 PKETRDALGIT----DNLVRLSV 371 (393)
Q Consensus 353 ~~~~~~~~g~~----~~~iRls~ 371 (393)
+.....++|.. .+.+|+|+
T Consensus 331 ~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 331 PSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred CCHHHHHcCCCHHHhCccEEEeC
Confidence 22445566665 47889885
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=189.05 Aligned_cols=305 Identities=19% Similarity=0.203 Sum_probs=204.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
.+...++|+++|+++|.++.+++++|++++ .++.++ +++||+|++++++|.+ +...+...|+++++++.+
T Consensus 28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~----~~~~~~~~G~~~~~~~~~~~~~ 103 (380)
T TIGR03588 28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVA----TANCALYCGAKVDFVDIDPDTG 103 (380)
T ss_pred ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHH----HHHHHHHcCCEEEEEecCCCcC
Confidence 467889999999999999899999999998 666677 7899999999999986 345567789999998873
Q ss_pred --CHHHHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcC----cEEEE
Q psy12791 132 --KIENLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGV----DIVLY 201 (393)
Q Consensus 132 --d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~----di~~~ 201 (393)
|++++++.++ +++++|+++| ++|...++++|.++|+++ |++||+|++++.+........+. |+.+.
T Consensus 104 ~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~-~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~ 179 (380)
T TIGR03588 104 NIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAKKH-GLKIIEDASHALGAEYGGKPVGNCRYADATVF 179 (380)
T ss_pred CcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHHHc-CCEEEEECCCcccCccCCEeCCCccccceEEE
Confidence 7899999998 6789988654 579999999999999999 99999999999764322222344 99999
Q ss_pred ccc--ccccCCCCceEEEEEecChHHHHHHHHHHHhc-------------------------CCCCCHHHHHHHHhccCC
Q psy12791 202 SLT--KYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-------------------------GVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 202 S~s--K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 254 (393)
|++ |+++ .+ .+|+++++++++.++++...... ...++...+.+....++.
T Consensus 180 S~~~~K~~~-~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~ 256 (380)
T TIGR03588 180 SFHPVKIIT-TA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKK 256 (380)
T ss_pred ecCCCCccc-cc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHH
Confidence 987 8884 33 48999988888888876543210 112244455555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccc
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAES 333 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 333 (393)
+....++..++...+.+.|...+.+... .+. ... .....+..+.+.. .....+.+.+.|...++...
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~-~~~-~~~----------~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~ 324 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPL-TIP-LGS----------KSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQ 324 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCC-CCC-CCC----------EeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcc
Confidence 7777777788888888888877654311 110 000 0001223333421 11234445555544444443
Q ss_pred cCCccccccCccccc---CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 334 LGGIESLADLPAEMT---HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~---~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.... .+...|.... ...++..+. .....|+|.++..-++++++.+.++++++
T Consensus 325 ~~~~-~~~~~~~~~~~~~~~~~p~a~~----~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 325 VHYI-PVHLQPYYRQGFGDGDLPSAEN----FYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred cCCc-ccccChhhhccCCcCCCcHHHH----HHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 2211 1111111110 111222221 12588999999999999999999999865
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=185.72 Aligned_cols=283 Identities=18% Similarity=0.136 Sum_probs=213.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+|++.||+++|.+++++++||-.+. .++.++.+++|.|+.....|.+ ....++..+++++.+...|+++|
T Consensus 83 ~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHAS----iidG~rls~a~~~~f~HnD~~~L 158 (388)
T COG0156 83 SDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHAS----IIDGIRLSRAEVRRFKHNDLDHL 158 (388)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhh----HHHHHHhCCCcEEEecCCCHHHH
Confidence 467889999999999999999999999996 8888999999999998888875 45667788999999999999999
Q ss_pred HhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---------CC-CcCcEEE
Q psy12791 137 IKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LP-WGVDIVL 200 (393)
Q Consensus 137 ~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~-~~~di~~ 200 (393)
++.+.+ +.++|+++..-+..|.+.|+++|.+++++| +++++|||+|+.+++... +. ...||++
T Consensus 159 e~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky-~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~ 237 (388)
T COG0156 159 EALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIV 237 (388)
T ss_pred HHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHh-CcEEEEEccccccccCCCCccHHHHhCCCCccceEEE
Confidence 999865 247888899999999999999999999999 999999999998765421 11 2348999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHhh
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~ 275 (393)
+|++|.+++. +||+.++ ..+.+.++.... .+.+..+|..+..+...++ ....+++++.++...+...++.
T Consensus 238 gTlsKAlGs~----Gg~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~ 312 (388)
T COG0156 238 GTLGKALGSS----GGYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA 312 (388)
T ss_pred EEchhhhccc----CceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999432 7888887 888887765432 3456667776655554443 3445677777777666654443
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
... +.. ....+++.+.+ ++++.+..+...+...++.+.. +.+|...
T Consensus 313 ~~~------~~~-------------~s~s~I~pv~~-gd~~~a~~~s~~l~~~Gi~v~~------i~~PTVp-------- 358 (388)
T COG0156 313 LGL------VLL-------------PSESPIIPVIL-GDEERALEASRALLEEGIYVSA------IRPPTVP-------- 358 (388)
T ss_pred cCC------ccC-------------CCCCCeeeeEe-CCHHHHHHHHHHHHHCCeeEee------ecCCCCC--------
Confidence 211 100 11247888888 6777777777776654443322 2233210
Q ss_pred hHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....||++++..+++++|+.+.++|.++
T Consensus 359 ------~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 359 ------KGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ------CCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 11478999999999999999999999875
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=188.93 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=136.6
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh-cCCCC----eEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 53 YSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL-LSAGD----HIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 53 y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~-~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
|..-..+..++.|+.+|+++|++ ..|+||+|+++ + .++..+ ...+| +|++....|++....+ ..++..|++
T Consensus 79 y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~-~~l~~~g~~ 157 (428)
T KOG1549|consen 79 YGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSC-RALQEEGLE 157 (428)
T ss_pred cchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHH-HHHHhcCeE
Confidence 44334556789999999999997 45999999876 6 555554 33455 8999999998765444 456778899
Q ss_pred EEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcE
Q psy12791 125 VDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDI 198 (393)
Q Consensus 125 v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di 198 (393)
++++|.. |++.+++.++++|++|.+.+.||.+|.++|+++|.++|++. ++.+++|.||+.+...... +.++|+
T Consensus 158 Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~-~v~v~~DaAQavG~i~vDV~eln~D~ 236 (428)
T KOG1549|consen 158 VTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREE-GVQVHVDAAQAVGKIPVDVQELNADF 236 (428)
T ss_pred EEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcC-CcEEEeehhhhcCCccccHHHcCchh
Confidence 9999986 78999999999999999999999999999999999999999 9999999999976653332 268999
Q ss_pred EEEcccccccCCCCceEEEEEec
Q psy12791 199 VLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 199 ~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
+..|.|||+ |++| +|+++++
T Consensus 237 ~s~s~HK~y-gp~~--iGaLYvr 256 (428)
T KOG1549|consen 237 LSISAHKIY-GPPG--IGALYVR 256 (428)
T ss_pred eeeeccccc-CCCc--ceEEEEc
Confidence 999999999 7999 9999998
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=199.47 Aligned_cols=319 Identities=16% Similarity=0.115 Sum_probs=200.1
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--cEEE-eccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAK--HGLC-YSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~-~~~G~~al-~~~~~ 92 (393)
.+++| .+. .+++++ .+.+.+++.+.+.. .+...+|+++...+|.+.++++++.+ +.++ +++|++++ .++..
T Consensus 43 ~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~ 122 (398)
T PRK03244 43 KEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKL 122 (398)
T ss_pred CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHH
Confidence 35566 222 567777 35666555443222 12223466777789999999998754 4455 45566667 55554
Q ss_pred hcCCC-CeEEEcCCCccchHHHHHHh---------cccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 93 LLSAG-DHIISGDDVYGGTYRYFAQV---------APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 93 ~~~~g-d~vl~~~~~y~~~~~~~~~~---------~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
...+| +.|+..+++|++........ +...+.++..+|..|++++++.+.+++++|+++.++||+|.++|
T Consensus 123 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~ 202 (398)
T PRK03244 123 ARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPP 202 (398)
T ss_pred HHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCC
Confidence 33355 56777778887642211111 11122356667777899999988778999999999999999998
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCccccc------CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQ------KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~------~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ |+++|+||+|..+... .......|++ +++|++ | +|+|+|+++++ +++.+.+...
T Consensus 203 ~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l-~-~G~~ig~~~~~-~~~~~~~~~~ 276 (398)
T PRK03244 203 AGYLAAAREITDRH-GALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGL-G-GGLPIGACLAF-GPAADLLTPG 276 (398)
T ss_pred HHHHHHHHHHHHHc-CCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhh-h-CCcccEEEEEc-HHHHhhccCC
Confidence 88999999999 9999999999753110 1112235665 778999 5 68999999998 7777766432
Q ss_pred HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
........++..+..+...++.+. ...++..+..+.+.+.|+++. ++.. ...++.|.++++.
T Consensus 277 ~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~----------~~v~g~g~~~~i~ 340 (398)
T PRK03244 277 LHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALG------HPLV----------DHVRGRGLLLGIV 340 (398)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC------CCce----------eeEeeccEEEEEE
Confidence 222222345666665555544322 234444555566777776531 1100 0112346788999
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++. +....+.+.+...++.+... ..++||++++...++++++.+.++|+++
T Consensus 341 ~~~--~~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~ 391 (398)
T PRK03244 341 LTA--PVAKAVEAAAREAGFLVNAV---------------------------APDVIRLAPPLIITDAQVDAFVAALPAI 391 (398)
T ss_pred Eec--cHHHHHHHHHHHCCeEEeec---------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 842 24555666655444333210 1478999999988888888888888765
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 392 l 392 (398)
T PRK03244 392 L 392 (398)
T ss_pred H
Confidence 3
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=192.07 Aligned_cols=282 Identities=13% Similarity=0.033 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHHhcCC--CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 61 RRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTHLLSA--GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 61 ~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~~~~~--gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
.+++++.+++++|.+ +.+++++|+++ . .+....+.+ ||+|+++++.|+++...+....+..|++++.++.+
T Consensus 66 ~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~ 145 (398)
T cd00613 66 LFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGG 145 (398)
T ss_pred HHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCC
Confidence 456777788888876 45566667665 3 334445565 99999999999986555544445556899888774
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCH-HHHHHHHHhCCCcEEEEeCccCccccc-CCCCCcCcEEEEcccccc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDV-KAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIVLYSLTKYM 207 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~~livDea~~~~~~~-~~~~~~~di~~~S~sK~~ 207 (393)
|++++++.+.+++++|++++|+ |+|.+.+. ++|.++|+++ |+++|+|+++..+... .+...++|+++.|+||++
T Consensus 146 ~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~-g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 223 (398)
T cd00613 146 TVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSA-GALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG 223 (398)
T ss_pred CcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhc-CCEEEEEeccccccCCCChHHcCCCEEEeeccccC
Confidence 6799999998899999999986 89999985 9999999999 9999999988653321 222357899999999998
Q ss_pred cCC---CCceEEEEEecChHHHHHHHHHHH-------------------------hcC----CCCCHHHHH---HHHhcc
Q psy12791 208 NGH---SDVVMGATVTNDDSLQARLKFLQN-------------------------SMG----VVPSPFDCW---LVTRGL 252 (393)
Q Consensus 208 ~G~---~G~r~G~~~~~~~~~~~~~~~~~~-------------------------~~~----~~~~~~~~~---~~~~~~ 252 (393)
++ .|.++||++.+ +++.+.+..... ..+ ...++.... ..+..+
T Consensus 224 -~p~g~Ggp~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~ 301 (398)
T cd00613 224 -VPHGGGGPGAGFFAVK-KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL 301 (398)
T ss_pred -CCCCCCCCceeEEEEh-hhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh
Confidence 33 25679999997 666665311000 000 000111111 111111
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccc
Q psy12791 253 --KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFR 329 (393)
Q Consensus 253 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ 329 (393)
+.++...++..++...+.+.|++++... .+. ......+++.++.. ......+.+.|...+
T Consensus 302 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~~L~~~g 364 (398)
T cd00613 302 GPEGLKEIAERAHLNANYLAKRLKEVGGVL---PFN--------------GPFFHEFVLRLPPLYGIRAEDLAKALIDGG 364 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCC--------------CCeeEEEEEEcCCcchHHHHHHHHhhhhcC
Confidence 2234455666777777888887654321 111 11123456666421 234566666665433
Q ss_pred cccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 330 ~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.... .. + ...+.||+|++.++++++++.+.++|
T Consensus 365 i~~~~------~~-~-----------------~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 365 FHAPT------MY-L-----------------PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ccccc------cc-c-----------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 22100 00 0 12578999999999999999988764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=182.64 Aligned_cols=306 Identities=21% Similarity=0.232 Sum_probs=213.1
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
-+...++++++|+++|++.++.++||++|+ .++.++ +.+||+|++++.+|.+|. +..-..|+++++++.+
T Consensus 33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~ 108 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTL 108 (374)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCccc
Confidence 377889999999999999999999999998 666644 799999999999998753 4455679999999987
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCc--CcEEEEcc--cc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWG--VDIVLYSL--TK 205 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~--~di~~~S~--sK 205 (393)
|++.++++++++||+|+..|-. |..+++++|.++|++| |++||+|.+++.+.....-..| .|+.+.|| +|
T Consensus 109 nid~~~ie~aIt~~tKAIipVhl~---G~~~dm~~i~~la~~~-~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K 184 (374)
T COG0399 109 NIDPDLIEAAITPRTKAIIPVHLA---GQPCDMDAIMALAKRH-GLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATK 184 (374)
T ss_pred CCCHHHHHHHcccCCeEEEEehhc---cCCCCHHHHHHHHHHc-CCeEEEEcchhccCeecCcccccccceEEEEecCCC
Confidence 8999999999999999977666 9999999999999999 9999999999976543322222 47888888 78
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh----------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS----------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (393)
.+. .| -+|.++++++++.++++..+.. +...++..++++....++.+++..++..+.++.+
T Consensus 185 ~it--tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y 261 (374)
T COG0399 185 NLT--TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIY 261 (374)
T ss_pred Ccc--cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 883 33 5999999999999998765532 1122345667777788888888888888888888
Q ss_pred HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccccc-
Q psy12791 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT- 348 (393)
Q Consensus 270 ~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~- 348 (393)
.+.|++.+.+. .|.......+ .-.+..+.++......+.+++.|+..++.. ....-.+..++.-..
T Consensus 262 ~~~l~~~~~~~---~p~~~~~~~~---------~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~-~~~~~P~~~~~~~~~~ 328 (374)
T COG0399 262 AEALKGLPGIT---LPPEPDGAVH---------AWHLYTILVDEEGISRDALMESLKEAGVGA-VVYFRPLHLQPAYRQL 328 (374)
T ss_pred HHHhhcCCCcc---ccCCCCCcee---------eeeeeEEEecCCCCCHHHHHHHHHhCCCCc-eEEeeccccchhhhcc
Confidence 88888776532 2221111000 012344444321133444555554444331 111111111110000
Q ss_pred ----CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 349 ----HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 349 ----~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+|..+. .....+.|-++..-++++++++.++++++.
T Consensus 329 ~~~~~~~lp~ae~----~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 329 GYFPEGDLPNAED----LSERILSLPLHPNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred cccccCCCchHHH----HhhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 012222222 236788888888889999999999998765
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=190.88 Aligned_cols=277 Identities=17% Similarity=0.104 Sum_probs=182.1
Q ss_pred chHHHHHHHHHHHhCCC-cE-EEeccHHHHH-HHHHHhc------CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 59 PTRRNLERCIASLEEAK-HG-LCYSSGLGAV-TAVTHLL------SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~-i~~~~G~~al-~~~~~~~------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
...+++++.+|+++|.+ .. +++++|++++ .++.++. ++||+|++++++|.+ +...++..|++++.++
T Consensus 59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~----~~~~~~~~G~~~~~v~ 134 (373)
T TIGR03812 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFS----FEKAAEMLGLELRYAP 134 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHH----HHHHHHHcCCeEEEEe
Confidence 34578999999999986 34 5555555555 4443332 467899999999974 6667788899999988
Q ss_pred CC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc--------CCCC---
Q psy12791 130 LR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ--------KSLP--- 193 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~--------~~~~--- 193 (393)
.+ |++++++.+.+++..+++.+|+||||.+.|+++|.++|+++ ++++++|++|+.+... ..++
T Consensus 135 ~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~-~~~livD~a~~~~~~~~~~~~~~~~~~d~~~ 213 (373)
T TIGR03812 135 LDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALEN-GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSL 213 (373)
T ss_pred eCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHc-CCeEEEEcCchhHHHHHHhcCCCCCCccccC
Confidence 64 79999999887775555556899999999999999999999 9999999999864321 1222
Q ss_pred CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC--------CCCHHHHHHHHhccC-----CHHHHHH
Q psy12791 194 WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV--------VPSPFDCWLVTRGLK-----TLPCRLK 260 (393)
Q Consensus 194 ~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~ 260 (393)
.+.|.+..|.+|+. .++.+.|+++..++++++.++....+... ..+......+...++ .++...+
T Consensus 214 ~~~d~~~~s~~K~~--~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~ 291 (373)
T TIGR03812 214 PGVQSITIDPHKMG--LSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA 291 (373)
T ss_pred CCCCEEEECccccC--CCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 26788889999964 34456776665447777766422221111 111122222222222 2344566
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCcccc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESL 340 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~ 340 (393)
+..++++.+.+.|+.++... + .+. ..+++.|.++ +.. .+.+.|...++.++.+
T Consensus 292 ~~~~~~~~l~~~L~~~g~~~-~-~~~----------------~~~~v~~~~~-~~~---~v~~~L~~~gi~v~~~----- 344 (373)
T TIGR03812 292 ECMENTRYLVEELKKIGFEP-V-IEP----------------VLNIVAFEVD-DPE---EVRKKLRDRGWYVSVT----- 344 (373)
T ss_pred HHHHHHHHHHHHHHhCCCeE-E-cCC----------------CceEEEEEeC-CHH---HHHHHHHHCCceeccC-----
Confidence 77777888888887654211 2 111 1357777774 332 3444443323333211
Q ss_pred ccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 341 ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+++||+|++..+++++++.+.++|+++
T Consensus 345 ---------------------~~~~~iRis~~~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 345 ---------------------RCPKALRIVVMPHVTREHIEEFLEDLKEI 373 (373)
T ss_pred ---------------------CCCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence 01468999999999999999999999764
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=185.68 Aligned_cols=307 Identities=19% Similarity=0.207 Sum_probs=199.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
..|...+|++++|+++|.++.+++++|++++ .++.++ +++||+|++++++|.++ ...+...|++++.++.+
T Consensus 31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~----~~~~~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVST----LNMIVLLGATPVMVDVDRDT 106 (379)
T ss_pred CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHH----HHHHHHcCCEEEEEecCCCc
Confidence 3578899999999999999899999999998 777777 78999999999999864 34456789999999864
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC--CC-CCcCcEEEEcccc
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK--SL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~--~~-~~~~di~~~S~sK 205 (393)
|++++++.+++++++|+ |+|++|...|+++|.++|+++ |+++|+|++|+.+.... .. ..+.+++..+.+|
T Consensus 107 ~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~-gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K 182 (379)
T PRK11658 107 LMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERY-GIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK 182 (379)
T ss_pred CCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHc-CCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence 78999999998999987 566789999999999999999 99999999998654322 12 2344444444456
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHhc----------------------C--CCCCHHHHHHHHhccCCHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSM----------------------G--VVPSPFDCWLVTRGLKTLPCRLKE 261 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
.+. +-++|+++++++++.++++..+..- | ..++.+++++....++.++...++
T Consensus 183 ~l~---~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~ 259 (379)
T PRK11658 183 NIT---CAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR 259 (379)
T ss_pred cCc---ccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 653 3369999988788988887544210 1 112344555555556666666666
Q ss_pred HHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--HHHHHHHHHhcCccccccccCCccc
Q psy12791 262 HERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
..+..+.+.+.|.+++... +..|.... .....++.+.+... ....+.+.+.|+..++...... ..
T Consensus 260 r~~~a~~~~~~L~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~-~~ 326 (379)
T PRK11658 260 RREIAARYLQALADLPFQP-LSLPAWPH-----------QHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHF-RA 326 (379)
T ss_pred HHHHHHHHHHHhcCCCCcc-CcCCCCCC-----------ceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccC-cC
Confidence 6777777778777654321 11111000 00013344555211 1134455555554444432211 11
Q ss_pred cccCcccc---cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 340 LADLPAEM---THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 340 ~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+...+... ....+|..+. .....|-|-++..-++++++.+.++++++.
T Consensus 327 ~~~~~~~~~~~~~~~~p~~~~----~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 327 AHTQKYYRERFPTLSLPNTEW----NSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cccChhhhccCCCCCChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 11111100 0111222222 125677788888888999999999998764
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=192.43 Aligned_cols=327 Identities=12% Similarity=0.069 Sum_probs=198.3
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC----CccccCC--CCchHHHH----HHHHHHHhCCCc-EEEeccHHHHH-H
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ----GFEYSRS--NNPTRRNL----ERCIASLEEAKH-GLCYSSGLGAV-T 88 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~----~~~y~~~--~~~~~~~l----r~~la~~~~~~~-~i~~~~G~~al-~ 88 (393)
.+.++ ++++|| +++.+.+++...+.. ....+++ +.+....+ ++.+++++|.+. .+++++|++++ .
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~ 102 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAA 102 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHH
Confidence 34455 788888 455555554332100 1111121 12233344 447899999884 47778999887 7
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHH-HHhcccCCcEEEeeCCC------CHHHHHhhcCC-CCcEEEEecCCCCccccc
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYF-AQVAPKIGLEVDFVDLR------KIENLIKYIKP-NTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~-~~~~~~~g~~v~~~~~~------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~ 160 (393)
++.+++++||+|+++.|+|++.+... ...+...|++++.++.+ |++++++.+++ ++++|+++++++ |...
T Consensus 103 ~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~--~~~~ 180 (416)
T PRK00011 103 VYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAY--SRPI 180 (416)
T ss_pred HHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcC--CCcc
Confidence 77788899999999999997532111 11123456788877653 78999998864 789999876654 4667
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccc-----cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~-----~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
|+++|.++|+++ |+++|+|++|..+.. ..++. +.|++++|+||+++ |.|+||++++++++.++++.....
T Consensus 181 ~~~~I~~la~~~-~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~---g~~gg~i~~~~~~~~~~l~~~~~~ 255 (416)
T PRK00011 181 DFKRFREIADEV-GAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLR---GPRGGLILTNDEELAKKINSAVFP 255 (416)
T ss_pred CHHHHHHHHHHc-CCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCC---CCCceEEEeCCHHHHHHHHHHhCc
Confidence 999999999999 999999999865432 12333 67899999999874 457999999767888888655432
Q ss_pred cC-CCC-CHHHHHHHH---hcc-CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 236 MG-VVP-SPFDCWLVT---RGL-KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 236 ~~-~~~-~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
.. ... ....+.+.. ..+ +.+..++++..++++.+.+.|++. ++. +. +. .....++++
T Consensus 256 ~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~~--------------~~~~~~~~i 318 (416)
T PRK00011 256 GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFR-VV-SG--------------GTDNHLVLV 318 (416)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe-ee-ec--------------CCCCeEEEE
Confidence 21 111 111111111 111 234556777888888999998864 332 11 11 011367788
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC----CChHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV----EGYTDLIADLDQ 385 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~----~~~~~~i~~l~~ 385 (393)
.+.+.......+.+.|...++.+..+.. .....++ ..+..+|++... ..++++++.+.+
T Consensus 319 ~~~~~~~~~~~~~~~L~~~GI~v~~~~~-p~~~~~~----------------~~~~~~Ri~~~~~~~~~~t~~di~~l~~ 381 (416)
T PRK00011 319 DLRSKGLTGKEAEAALEEANITVNKNAV-PFDPRSP----------------FVTSGIRIGTPAITTRGFKEAEMKEIAE 381 (416)
T ss_pred eCcccCCCHHHHHHHHHHcCcEEccCcC-CCCCCCC----------------CCCCceEecCHHHhhcCcCHHHHHHHHH
Confidence 7732111223444555444444432211 0000000 113568986533 245788888888
Q ss_pred HHHHhh
Q psy12791 386 ALRKAC 391 (393)
Q Consensus 386 al~~~~ 391 (393)
+|+++.
T Consensus 382 ~l~~~~ 387 (416)
T PRK00011 382 LIADVL 387 (416)
T ss_pred HHHHHH
Confidence 887653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-23 Score=194.00 Aligned_cols=318 Identities=16% Similarity=0.114 Sum_probs=196.8
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-- 93 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-- 93 (393)
.+++| .++ .+|++.+ +.+.+++.+.+... .....|+.+...+|++++++++|.++.+++++|++++ .++..+
T Consensus 27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~ 106 (379)
T TIGR00707 27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARK 106 (379)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 35567 333 5788776 45554443332211 1123456788999999999999988777777788876 444422
Q ss_pred -cC----CCCeEEEcCCCccchHHHHHHhc---------ccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 94 -LS----AGDHIISGDDVYGGTYRYFAQVA---------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 94 -~~----~gd~vl~~~~~y~~~~~~~~~~~---------~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
.. ++|+|++++|+|++......... .....++..++..|++++++.+.+++++|++++++||+|..
T Consensus 107 ~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~ 186 (379)
T TIGR00707 107 YTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVN 186 (379)
T ss_pred HhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCc
Confidence 22 37999999999975321111110 01112234445558999999998889999998777788865
Q ss_pred c-C---HHHHHHHHHhCCCcEEEEeCccCccccc-C--C---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 160 F-D---VKAISAVVKQHPDILLVLDNTFLTAYYQ-K--S---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 160 ~-~---~~~l~~l~~~~~~~~livDea~~~~~~~-~--~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
. + +++|.++|+++ ++++|+||+|.++... . + .....|++ ++||.+ | +|+|+||++++ +++++.+
T Consensus 187 ~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~-~-~G~riG~~~~~-~~~~~~~ 260 (379)
T TIGR00707 187 PASAEFLKALREICKDK-DALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGL-G-GGVPIGATLAK-EEVAEAF 260 (379)
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEcccc-c-CCcccEEEEEc-HHHHhhh
Confidence 3 3 88999999999 9999999999854221 1 1 11234544 689999 6 89999999997 7888877
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
...........++..+..+...++.+. ...+...++.+.+.+.|++... . . ... ...+.|.++
T Consensus 261 ~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~---~~~----------~~~~~g~~~ 325 (379)
T TIGR00707 261 TPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGK-N-Y---PNK----------EVRGKGLML 325 (379)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-h-C---CCC----------ccccCceEE
Confidence 542221222345555555554443221 2344555556666666654211 0 0 000 011235678
Q ss_pred EEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
++.++.+ ...+.+.+...++.+.++ ..+++|++++...++++++.+.++|
T Consensus 326 ~~~~~~~---~~~~~~~l~~~Gv~v~~~---------------------------~~~~lRi~~~~~~t~~~i~~~~~~l 375 (379)
T TIGR00707 326 GIELEAP---CKDIVKKALEKGLLVNCA---------------------------GPKVLRFLPPLIITKEEIDEAVSAL 375 (379)
T ss_pred EEEecCc---HHHHHHHHHHCCcEEeeC---------------------------CCCEEEEECCCcCCHHHHHHHHHHH
Confidence 8888433 345555555444443321 1378999999988888888888888
Q ss_pred HHh
Q psy12791 388 RKA 390 (393)
Q Consensus 388 ~~~ 390 (393)
+++
T Consensus 376 ~~~ 378 (379)
T TIGR00707 376 EEA 378 (379)
T ss_pred HHh
Confidence 754
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=185.91 Aligned_cols=277 Identities=16% Similarity=0.102 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhCCCc-E-EEeccHHHHH-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 61 RRNLERCIASLEEAKH-G-LCYSSGLGAV-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~-~-i~~~~G~~al-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
..++++.+|+++|.++ . +++++|++++ .++..+. +++|+|++++++|.+ +...++..|++++.++.+
T Consensus 61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s----~~~~~~~~g~~~~~v~~~~~ 136 (371)
T PRK13520 61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFS----FDKAADMLGVELRRAPLDDD 136 (371)
T ss_pred HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHH----HHHHHHHcCceEEEecCCCC
Confidence 3689999999999863 3 4544555566 5544443 257899999999874 566677889999998864
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---CC--CC---CcCcEEE
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---KS--LP---WGVDIVL 200 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---~~--~~---~~~di~~ 200 (393)
|++++++.+++++++|++++++|+||.+.|+++|.++|+++ |+++++|++|+.+... .. ++ .+.|.+.
T Consensus 137 ~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~-g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~ 215 (371)
T PRK13520 137 YRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALEN-GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT 215 (371)
T ss_pred CcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHc-CCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence 79999999988888888889999999999999999999999 9999999999865421 11 11 3678888
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC--------CCCCHHHHHHHHhccC-----CHHHHHHHHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG--------VVPSPFDCWLVTRGLK-----TLPCRLKEHERGSI 267 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 267 (393)
.|.+|+. .++.++|+++..++++.+.+.....+.. +..+......+...++ .+..++++..++.+
T Consensus 216 ~s~~K~~--~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~ 293 (371)
T PRK13520 216 IDPHKMG--LAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTR 293 (371)
T ss_pred ECCcccc--CccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHH
Confidence 9999975 3445688888765777776542211111 0111112222222222 23445666677777
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
.+.+.|+.. ++..+..+ ..+++.+.++ +.+ .+.+.|...++.++.+.
T Consensus 294 ~l~~~L~~~-g~~~~~~~-----------------~~~~v~~~~~-~~~---~v~~~L~~~gi~v~~~~----------- 340 (371)
T PRK13520 294 WLAEELKER-GFEPVIEP-----------------VLNIVAFDDP-NPD---EVREKLRERGWRVSVTR----------- 340 (371)
T ss_pred HHHHHHHhC-CCEEecCC-----------------CceEEEEecC-CHH---HHHHHHHHCCceeccCC-----------
Confidence 788888765 33212111 1357777774 333 33333332233332210
Q ss_pred cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 348 THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.++++|+|++..+++++++.+.++|+++.+
T Consensus 341 ---------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 ---------------CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred ---------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 146899999999999999999999987654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=187.07 Aligned_cols=293 Identities=15% Similarity=0.108 Sum_probs=184.0
Q ss_pred CchHHHHHH----HHHHHhCCCc-EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHH-HHhcccCCcEEEeeCC
Q psy12791 58 NPTRRNLER----CIASLEEAKH-GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYF-AQVAPKIGLEVDFVDL 130 (393)
Q Consensus 58 ~~~~~~lr~----~la~~~~~~~-~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~-~~~~~~~g~~v~~~~~ 130 (393)
.+...++++ .+++++|.+. .+++++|++++ .++.+++++||+|++++|+|++..... ...++..|.++..++.
T Consensus 60 ~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 139 (402)
T cd00378 60 CEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPY 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecC
Confidence 344444444 5678899874 56667898887 777888999999999999997532111 1125567876655543
Q ss_pred --C------CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc-----cCCCCCcC
Q psy12791 131 --R------KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY-----QKSLPWGV 196 (393)
Q Consensus 131 --~------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~-----~~~~~~~~ 196 (393)
+ |++++++.+. +++++|++++|+|| ...|+++|.++|+++ |+++|+|++|..+.. ..++. +.
T Consensus 140 ~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~-~~~li~D~a~~~g~~~~g~~~~~~~-~~ 215 (402)
T cd00378 140 GVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEV-GAYLLVDMAHVAGLVAGGVFPNPLP-GA 215 (402)
T ss_pred CcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhc-CCEEEEEccchhhhhhcccCCCccc-CC
Confidence 2 7899999885 57999999998876 567999999999999 999999999754321 12233 57
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc-CCCCCHHHHHH----HHhccC-CHHHHHHHHHHHHHHHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSPFDCWL----VTRGLK-TLPCRLKEHERGSIEVA 270 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~ 270 (393)
|++++|+||++. |.|+||++++++++.+.++...... .+......... +....+ ....+++++.+++..+.
T Consensus 216 dv~~~s~sK~l~---G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 292 (402)
T cd00378 216 DVVTTTTHKTLR---GPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA 292 (402)
T ss_pred cEEEeccccCCC---CCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 899999999874 4579999998558888876544321 11111111111 111222 34456677778888888
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCC
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~ 350 (393)
+.|.++ ++..+..|. .+.++|+.+++.......+.+.+...++.+..+.. |.... .
T Consensus 293 ~~L~~~-g~~~~~~~~----------------~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~------p~~~~-~ 348 (402)
T cd00378 293 EALKER-GFKVVSGGT----------------DNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTL------PWDPS-S 348 (402)
T ss_pred HHHHhC-CCeEeecCC----------------CCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcC------CCCCC-C
Confidence 888765 333221111 14678888842111122333334333444432111 10000 0
Q ss_pred CCChhhHhhcCCCCCeEEEEecCCC----hHHHHHHHHHHHHHhh
Q psy12791 351 SIPKETRDALGITDNLVRLSVGVEG----YTDLIADLDQALRKAC 391 (393)
Q Consensus 351 ~~~~~~~~~~g~~~~~iRls~~~~~----~~~~i~~l~~al~~~~ 391 (393)
......+|++++..+ ++++++.+.+.|+++.
T Consensus 349 ----------~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 349 ----------PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred ----------CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 012578999998755 5777888888887653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=182.35 Aligned_cols=280 Identities=17% Similarity=0.095 Sum_probs=194.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--------------cCCCCeEEEcCCCccchHHHHHHhcccC-C
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--------------LSAGDHIISGDDVYGGTYRYFAQVAPKI-G 122 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--------------~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g 122 (393)
....+|+++||+++|.++++++++|..|. .++.++ ...+|.|+.....|.+.+.-.. ..+.. +
T Consensus 147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~~~~ 225 (476)
T PLN02955 147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAERQGN 225 (476)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccccCC
Confidence 45678999999999999999999999984 555444 2345677777777876433222 22222 5
Q ss_pred cEEEeeCCCCHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------
Q psy12791 123 LEVDFVDLRKIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK--------- 190 (393)
Q Consensus 123 ~~v~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~--------- 190 (393)
+++..++.+|++++++.+.. +.++|+++...++.|.+.|+++|.++|++| |+++|+||+|+.+....
T Consensus 226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~-ga~LiVDEAH~~Gv~G~~G~G~~e~~ 304 (476)
T PLN02955 226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKY-GFLLVIDDAHGTFVCGENGGGVAEEF 304 (476)
T ss_pred ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc-CcEEEEcccccCceecCCCCcHHHHh
Confidence 88888999999999888742 356788889999999999999999999999 99999999999765432
Q ss_pred CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCC---HHHHHHHHHHH
Q psy12791 191 SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKT---LPCRLKEHERG 265 (393)
Q Consensus 191 ~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 265 (393)
.+....|++++||+|.+ |. ++||++++ +++++.++..... +++..++..+..++.+++. ...+++++.++
T Consensus 305 g~~~di~ii~~TLsKA~-G~---~GGfi~gs-~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n 379 (476)
T PLN02955 305 NCEADVDLCVGTLSKAA-GC---HGGFIACS-KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWER 379 (476)
T ss_pred CCCCCCcEEEEeCccch-hc---cCceeecH-HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 12235789999999998 44 48999987 7788877654332 2333333343333333322 23355555555
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
.+.+.+.+ +.. . ..+++.+.+ +++..+..+.+.|...++-++. +..|.
T Consensus 380 ~~~fr~~~----G~~---~------------------~sPI~pI~i-g~~~~a~~~~~~L~~~Gi~v~~------i~yPt 427 (476)
T PLN02955 380 VKEFKALS----GVD---I------------------SSPIISLVV-GNQEKALKASRYLLKSGFHVMA------IRPPT 427 (476)
T ss_pred HHHHHHhc----CCC---C------------------CCCEEEEEe-CCHHHHHHHHHHHHHCCCEEEE------ECCCC
Confidence 55554421 110 0 147888888 6888888888888765544432 22222
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
. ......+|++++..+++++++.+.++|.++.
T Consensus 428 V--------------P~g~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 428 V--------------PPNSCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred C--------------CCCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 1 0114579999999999999999999998764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=184.72 Aligned_cols=298 Identities=15% Similarity=0.061 Sum_probs=190.4
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-----
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL----- 130 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~----- 130 (393)
+.++..+||++++++++.+..+++.+|+.++ .++.+++++|| |++++|.|.+ +.......|++++.++.
T Consensus 76 ~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~----~~~~i~~~G~~~v~v~~~~~~~ 150 (460)
T PRK13238 76 GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDT----TRAHIELNGATAVDLVIDEALD 150 (460)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccc----hHHHHHHcCCEEEEEecccccc
Confidence 4578899999999999988887777788887 77778899999 9999998875 44556678999888765
Q ss_pred ----------CCHHHHHhhcCC----CCcEEEEecCCCCcc-cccC---HHHHHHHHHhCCCcEEEEeCccCcc--ccc-
Q psy12791 131 ----------RKIENLIKYIKP----NTKMVWIENPTNPLM-TVFD---VKAISAVVKQHPDILLVLDNTFLTA--YYQ- 189 (393)
Q Consensus 131 ----------~d~~~l~~~l~~----~~~~v~l~~p~nptG-~~~~---~~~l~~l~~~~~~~~livDea~~~~--~~~- 189 (393)
-|++++++.+.+ ++++|++++|+|||| .+++ +++|.++|+++ |++||+|+++... ++.
T Consensus 151 ~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~Daa~~~e~a~f~~ 229 (460)
T PRK13238 151 TGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVIDAARFAENAYFIK 229 (460)
T ss_pred ccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECcchhhhhhhhh
Confidence 268899999873 699999999999998 7877 56899999999 9999999987531 110
Q ss_pred ------CCCC---------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q psy12791 190 ------KSLP---------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-----MGVVPSPFDCWLVT 249 (393)
Q Consensus 190 ------~~~~---------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 249 (393)
.... ...|+++.|.+|...|+ .+|+++++++++.++++..... ..+..+...+..+.
T Consensus 230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala 306 (460)
T PRK13238 230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALA 306 (460)
T ss_pred hccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHH
Confidence 1111 13688888989976433 2688888767888888765311 12222233233333
Q ss_pred hccCC-H-HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-------HHHHHH
Q psy12791 250 RGLKT-L-PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-------AEETRI 320 (393)
Q Consensus 250 ~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 320 (393)
.+++. . ....+...++++.+.+.|++. ++. +..|. .+..+.+.+..- ......
T Consensus 307 ~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~~-~~~p~----------------Gg~~v~~d~~~~~~~~~~~~~~~~~ 368 (460)
T PRK13238 307 VGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GVP-IQTPA----------------GGHAVFVDAGKFLPHIPAEQFPAQA 368 (460)
T ss_pred hhHHHhhChHHHHHHHHHHHHHHHHHHHC-CCC-eEccC----------------CceEEEEEchhcCCCCCCCCCchHH
Confidence 22221 1 123333444567888888764 333 22232 123344444210 001233
Q ss_pred HHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHHHHHHHHhh
Q psy12791 321 FLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADLDQALRKAC 391 (393)
Q Consensus 321 ~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l~~al~~~~ 391 (393)
|...| ...++....++.+.....+...... -....++||.+..- =+++.++.+.++|..+.
T Consensus 369 ~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~----------~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 369 LACELYLEAGIRGVEIGSLLLGRDPKTGEQL----------PAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred HHHHHHHHcCeeeecccceecccCCCCcccc----------CCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 33332 3446666666665544322110000 01258999999753 26777788888887765
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=187.57 Aligned_cols=264 Identities=16% Similarity=0.118 Sum_probs=175.3
Q ss_pred chHHHHHHH----HHHHhCCC----cEEEeccHHHHH-HHHHHhcC------------CC--CeEEEcCCCccchHHHHH
Q psy12791 59 PTRRNLERC----IASLEEAK----HGLCYSSGLGAV-TAVTHLLS------------AG--DHIISGDDVYGGTYRYFA 115 (393)
Q Consensus 59 ~~~~~lr~~----la~~~~~~----~~i~~~~G~~al-~~~~~~~~------------~g--d~vl~~~~~y~~~~~~~~ 115 (393)
+...+++++ +++++|.+ +.+++++|++++ .++.++.. ++ +.|++++++|.+ +.
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~----~~ 109 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS----VE 109 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH----HH
Confidence 444455555 56666864 455556666676 55554421 23 378888888875 55
Q ss_pred HhcccCCcEEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccC
Q psy12791 116 QVAPKIGLEVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFL 184 (393)
Q Consensus 116 ~~~~~~g~~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~ 184 (393)
..++..|.+++.++.+ |++++++.+.+ ++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+
T Consensus 110 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~-~~~l~vD~a~~ 188 (345)
T cd06450 110 KAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKY-DLWLHVDAAYG 188 (345)
T ss_pred HHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHh-CCeEEEechhh
Confidence 5566678999988764 78999998876 788999999999999999999999999999 99999999998
Q ss_pred cccccCCC------C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc--CCH
Q psy12791 185 TAYYQKSL------P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL--KTL 255 (393)
Q Consensus 185 ~~~~~~~~------~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 255 (393)
.+...... . .+.|++..|+||+++++. ++|+++.+ ....+.+.+.+ ..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~--------------------~~~~~~~l~~l~~~g~ 246 (345)
T cd06450 189 GFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR--------------------ALKLWATLRRFGRDGY 246 (345)
T ss_pred HHHhhChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH--------------------HHHHHHHHHHHhHHHH
Confidence 76542111 1 257899999999885444 48887654 11111111111 224
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC---HHHHHHHHHhcCcccccc
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG---AEETRIFLESLLIFRCAE 332 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 332 (393)
+.++++..+.++.+.+.|++.+++..+..+ ..+++.|.+++. ......+.+.|...+...
T Consensus 247 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~ 309 (345)
T cd06450 247 GEHIDRIVDLAKYLAELIRADPGFELLGEP-----------------NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWH 309 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEE
Confidence 556677777888888888877765422111 146788887432 234445666554432111
Q ss_pred ccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHHHHHHHH
Q psy12791 333 SLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADLDQALRK 389 (393)
Q Consensus 333 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l~~al~~ 389 (393)
..+.. . + .+.++|+|++.. +++++++.+.++|++
T Consensus 310 ~~~~~------~----------------~-~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 310 VPATT------L----------------G-GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEeeE------E----------------C-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 11000 0 0 157899999987 599999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-21 Score=179.62 Aligned_cols=306 Identities=16% Similarity=0.122 Sum_probs=201.9
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----- 131 (393)
+..+++++.+++++|.++.+++++|++++ .++..+ +++||+|+++.++|.+ +...+...|++++.++.+
T Consensus 31 ~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~----~~~~~~~~G~~~v~~d~d~~~~~ 106 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS----TANAFVLRGAKIVFVDIRPDTMN 106 (375)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHH----HHHHHHHcCCEEEEEecCCCcCC
Confidence 56688999999999998888888888888 555544 7899999999999986 445567789999999864
Q ss_pred -CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc--CCCCCcCcEEEEccc--cc
Q psy12791 132 -KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ--KSLPWGVDIVLYSLT--KY 206 (393)
Q Consensus 132 -d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~--~~~~~~~di~~~S~s--K~ 206 (393)
|++++++.+++++++|+++| ++|...++++|.++|+++ |+++|+|++|+.+... .+.....|+.+.||+ |.
T Consensus 107 ~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~-~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~ 182 (375)
T PRK11706 107 IDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKH-NLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKN 182 (375)
T ss_pred cCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHc-CCEEEEECccccccccCCeeeecCcCEEEEeCCCCcc
Confidence 68999999988899999764 689999999999999999 9999999999876521 222222477788876 99
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHh-------------------cCC--CCCHHHHHHHHhccCCHHHHHHHHHHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNS-------------------MGV--VPSPFDCWLVTRGLKTLPCRLKEHERG 265 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
++ . |.++++++ +++++.++++..+.. .|. .++...+.+....++.+....++..++
T Consensus 183 l~-~-g~gG~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~ 259 (375)
T PRK11706 183 YT-A-GEGGALLI-NDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL 259 (375)
T ss_pred cc-c-cCCeEEEE-CCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 93 4 65555554 558888877665531 111 124455666666667777667777777
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
...+.+.|.+++....+..+..+.. ......++++.++ +....+.+.+.|...++..+... ..+...+.
T Consensus 260 ~~~~~~~L~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~r~~l~~~L~~~gI~~~~~~-~p~~~~~~ 328 (375)
T PRK11706 260 WQRYYDALAPLAEAGRIELPSIPDD---------CKHNAHMFYIKLR-DLEDRSALINFLKEAGIMAVFHY-IPLHSSPA 328 (375)
T ss_pred HHHHHHHhcCCCcCCeeecCCCCCC---------CceeeEEEEEEEC-CcCCHHHHHHHHHHCCCCccccC-CccCcchh
Confidence 7788888876552111222221100 0001245667773 22345566666655555443321 11111111
Q ss_pred ccc----CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 346 EMT----HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 346 ~~~----~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
... ....|..+.. ..+.|-|-++..-++++++.+.+++++.
T Consensus 329 ~~~~~~~~~~~p~a~~~----~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 329 GERFGRFHGEDRYTTKE----SERLLRLPLFYNLTDVEQRTVIDTILEF 373 (375)
T ss_pred hHhcCCCCCCChHHHHH----HhCcEeccCCCCCCHHHHHHHHHHHHHH
Confidence 110 0122322222 2566777777777888899999998875
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=188.32 Aligned_cols=211 Identities=21% Similarity=0.250 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccHHHHHHHHHHhcCCCCeEEEcCCC---ccchHHHHHHhcccCCcEEEeeCC---CCH
Q psy12791 60 TRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDV---YGGTYRYFAQVAPKIGLEVDFVDL---RKI 133 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~~i~~~~G~~al~~~~~~~~~gd~vl~~~~~---y~~~~~~~~~~~~~~g~~v~~~~~---~d~ 133 (393)
.+..+++.+|+++|++++++++||++++.+++..+.+||+|++++.. |++++.. ...++..|+++++++. .++
T Consensus 123 r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~l 201 (454)
T TIGR00474 123 RYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTHL 201 (454)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCCH
Confidence 45789999999999999999999999984333557899999999876 4555443 4566788999999987 378
Q ss_pred HHHHhhcCCCCcEEEEecCCCCc--c--cccCHHHHHHHHHhCCCcEEEEeCccCcc------------cccCCCCCcCc
Q psy12791 134 ENLIKYIKPNTKMVWIENPTNPL--M--TVFDVKAISAVVKQHPDILLVLDNTFLTA------------YYQKSLPWGVD 197 (393)
Q Consensus 134 ~~l~~~l~~~~~~v~l~~p~npt--G--~~~~~~~l~~l~~~~~~~~livDea~~~~------------~~~~~~~~~~d 197 (393)
++++++++++|++|++++++|++ | ...|+++|.++|+++ |+++++|.+.+.. ..+.+...|+|
T Consensus 202 ~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~-g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD 280 (454)
T TIGR00474 202 KDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREH-GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD 280 (454)
T ss_pred HHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence 99999999999999999999995 5 578999999999999 9999999874321 11233446899
Q ss_pred EEEEcccccccCCCCceEEEEEecChHHHHHHH----------------HHHHhcCCCCCHHHHHHHHhccCCHHHHHHH
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK----------------FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKE 261 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
++++|.+|+++|+ .+|+++++ ++++++++ ......+....+..++.....++.+..++++
T Consensus 281 iv~fSg~K~LgGp---~~G~i~g~-~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~ 356 (454)
T TIGR00474 281 LVTFSGDKLLGGP---QAGIIVGK-KELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEE 356 (454)
T ss_pred EEEecCccccCCC---eEEEEEEC-HHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHH
Confidence 9999999999655 38999998 66665432 1223445566777778888888888889999
Q ss_pred HHHHHHHHHHHHhhC
Q psy12791 262 HERGSIEVAKFLESH 276 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~ 276 (393)
+.+++.++.++|+..
T Consensus 357 ~~~~A~~la~~L~~~ 371 (454)
T TIGR00474 357 LRARAERLAKRLKAA 371 (454)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999864
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=189.94 Aligned_cols=322 Identities=17% Similarity=0.112 Sum_probs=199.8
Q ss_pred CCCCC-CCC--CCCCc-cCCeeeeCCCCCCCCCccccCC--CCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCV--IPPII-LSTTFKQNTPGQPPQGFEYSRS--NNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~-~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~~ 92 (393)
.+++| .++ .++++ .++.+.++..+.+.....|... ..+...++++.++++++ .++.+++++|++++ .++..
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~ 115 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKL 115 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 35567 443 45666 5556665554443222333322 24678899999999998 44566667777787 55544
Q ss_pred h--cCCCCeEEEcCCCccchHHHHHHhcc---------cCCcEEEeeCCC-----------CHHHHHhhcCC---CCcEE
Q psy12791 93 L--LSAGDHIISGDDVYGGTYRYFAQVAP---------KIGLEVDFVDLR-----------KIENLIKYIKP---NTKMV 147 (393)
Q Consensus 93 ~--~~~gd~vl~~~~~y~~~~~~~~~~~~---------~~g~~v~~~~~~-----------d~~~l~~~l~~---~~~~v 147 (393)
+ ..++++|++.+++|++.......... ....+++.+|.+ |++++++.+.+ ++++|
T Consensus 116 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 195 (413)
T cd00610 116 ARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAV 195 (413)
T ss_pred HHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEE
Confidence 3 36789999999999875433322211 112356677776 78889888865 46777
Q ss_pred EEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcccccccCCCCceEEE
Q psy12791 148 WIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGA 217 (393)
Q Consensus 148 ~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~ 217 (393)
+++..+|++|.+++ +++|.++|+++ |+++|+||+|+.+.. ... .....|+ .|+||+++ . |+|+||
T Consensus 196 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~--~t~sK~l~-~-g~~~g~ 270 (413)
T cd00610 196 IVEPIQGEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VTLGKGLG-G-GLPLGA 270 (413)
T ss_pred EEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcchhhHhhcCCCCCe--EEEccccc-C-ccccEE
Confidence 77777888899887 99999999999 999999999986411 111 1123354 47889994 4 799999
Q ss_pred EEecChHHHHHH--HHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcch
Q psy12791 218 TVTNDDSLQARL--KFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNH 293 (393)
Q Consensus 218 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~ 293 (393)
++++ +++++.+ ...........++..+..+...++.+. ...++..+..+.+.+.|+..... .+.
T Consensus 271 ~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~------- 338 (413)
T cd00610 271 VLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEK----HPL------- 338 (413)
T ss_pred EEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh----CCc-------
Confidence 9987 8888875 111111122334555444444443322 23445555556666666543110 000
Q ss_pred HHHhhhcCCCcceEEEEEcCC-------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCe
Q psy12791 294 ELAKSQWSGTSGMLSFYVNGG-------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNL 366 (393)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~ 366 (393)
.....+.|.++++.+... ......+.+.+...++.+..++ .+.
T Consensus 339 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~---------------------------~~~ 388 (413)
T cd00610 339 ---VGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG---------------------------GNV 388 (413)
T ss_pred ---EEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC---------------------------CCE
Confidence 000123467888888422 1345666666654444433221 368
Q ss_pred EEEEecCCChHHHHHHHHHHHHHh
Q psy12791 367 VRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 367 iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+|++++..+++++++.+.++|+++
T Consensus 389 lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 389 IRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHh
Confidence 999999999999899888888754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=182.73 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=172.2
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+..+++|+++|+++|.++.+++++|..++ ..+..+.++||.|++....|.+++..+.. ..+.. +.++..|++++
T Consensus 55 ~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~---~~~~~-~~~~~~d~~~l 130 (370)
T PRK05937 55 SSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV---ISGWH-QSFRHNDLDHL 130 (370)
T ss_pred hHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH---cCCce-EEecCCCHHHH
Confidence 467899999999999999899999999986 44444557788888878888775544332 22333 44566788888
Q ss_pred HhhcC------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-----CCc---CcEEEEc
Q psy12791 137 IKYIK------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-----PWG---VDIVLYS 202 (393)
Q Consensus 137 ~~~l~------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-----~~~---~di~~~S 202 (393)
++.++ +++.+|++++++|++|.+.|+++|.++|+++ |+++++||+|+.+...... ..+ .++++.|
T Consensus 131 ~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~t 209 (370)
T PRK05937 131 ESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKY-HAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVT 209 (370)
T ss_pred HHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEe
Confidence 88875 2356778899999999999999999999999 9999999999976432211 112 2377899
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
+||.+ |+.| +|.+ .. +++.+.+..... .+....++.....+...++.+....+...+..+.+.+++.+.-.
T Consensus 210 lsK~~-g~~G--~~vl-~~-~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~-- 282 (370)
T PRK05937 210 YSKAL-GSMG--AALL-SS-SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFS-- 282 (370)
T ss_pred chhhh-hcCc--eEEE-cC-HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--
Confidence 99999 6777 4544 44 454444432211 12223344443333333332221111222233334444432100
Q ss_pred eEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhc
Q psy12791 281 GVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360 (393)
Q Consensus 281 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~ 360 (393)
...+ +....|.+++ . ..+.+.+.|...++.++. .+.+
T Consensus 283 -~~~~------------------~~~~~i~~~~-~-~~~~~~~~L~~~gi~v~~------~~~~---------------- 319 (370)
T PRK05937 283 -SAAP------------------GCVQPIFLPG-I-SEQELYSKLVETGIRVGV------VCFP---------------- 319 (370)
T ss_pred -CCCC------------------CCEEEEEeCC-h-hHHHHHHHHHHCCeeEEe------eCCC----------------
Confidence 0000 1223455532 2 234555555443443321 1111
Q ss_pred CCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 361 GITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 361 g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++||+|++.++++++++.+.++|+++.
T Consensus 320 --~~~~iRis~~~~~t~edid~l~~~L~~~~ 348 (370)
T PRK05937 320 --TGPFLRVNLHAFNTEDEVDILVSVLATYL 348 (370)
T ss_pred --CCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 14689999999999999999999998764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=182.68 Aligned_cols=286 Identities=19% Similarity=0.152 Sum_probs=192.4
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC---------CC-CeEEEcCCCccchHHHHHHh--------
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS---------AG-DHIISGDDVYGGTYRYFAQV-------- 117 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~---------~g-d~vl~~~~~y~~~~~~~~~~-------- 117 (393)
..+...+|++.|+++.+.+..++++||++|+ .++..+.. +| ++|++....|++.......+
T Consensus 81 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 81 RNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 4567889999999999888899999999997 55544321 23 67888887777643222211
Q ss_pred -cccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC-
Q psy12791 118 -APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS- 191 (393)
Q Consensus 118 -~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~- 191 (393)
.......+..++..|++++++.+.+++++|++++|+||+|.+.| +++|.++|+++ |+++|+||+|..+ ...+
T Consensus 161 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~-g~~g~ 238 (401)
T PRK00854 161 GFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGL-GRTGK 238 (401)
T ss_pred cCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCC-CCCch
Confidence 11112356677778999999999888999999999999999997 99999999999 9999999999742 2111
Q ss_pred ------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHH
Q psy12791 192 ------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHE 263 (393)
Q Consensus 192 ------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 263 (393)
.....|+++. +|+++| ..+|+|+++++ +++.+.+...........++..+..+...++.+.. ..+...
T Consensus 239 ~~~~~~~g~~~D~~~~--~K~l~g-g~~~ig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~ 314 (401)
T PRK00854 239 LLAEEHEGIEADVTLI--GKALSG-GFYPVSAVLSN-SEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAA 314 (401)
T ss_pred HhHHhhcCCCCCEEEe--cccccC-CccCeEEEEEc-HHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 1224577764 699953 34689999997 77777664322222223467777766666655443 345555
Q ss_pred HHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccC
Q psy12791 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 264 ~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
++.+.+.+.|++..... + ...++.|.++.+.+.++......+.+.+...++.+..
T Consensus 315 ~~~~~l~~~L~~~~~~~-~---------------~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~--------- 369 (401)
T PRK00854 315 EMGAYFLEGLRSIRSNI-V---------------REVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKD--------- 369 (401)
T ss_pred HHHHHHHHHHHhhccCc-e---------------EEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEec---------
Confidence 66666777776542110 0 0112346677776643333455666666544433311
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+.||+++++..++++++.+.++|+++.
T Consensus 370 ------------------~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 370 ------------------THDHTIRLAPPLVITREQVDWALEQIAKVL 399 (401)
T ss_pred ------------------CCCCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence 014799999999999999998888887653
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=183.37 Aligned_cols=305 Identities=23% Similarity=0.240 Sum_probs=208.4
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
.+...++++++++++|.+.++.++||++|+ .++.++ +++||+|++|..+|.++ .......|+++++++.+
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~----~~ai~~~G~~pv~~Di~~~~~ 99 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPAT----ASAILWAGAEPVFVDIDPETL 99 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THH----HHHHHHTT-EEEEE-BETTTS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHH----HHHHHHhccEEEEEeccCCcC
Confidence 478899999999999999999999999998 666655 67999999999999964 45567789999999886
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC--CCCCcCcEEEEcc--cc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK--SLPWGVDIVLYSL--TK 205 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~~~~di~~~S~--sK 205 (393)
|++++++.++++|++|++.|.. |...++++|.++|+++ |++||.|.+++.+.... ....-.|+.+.|| +|
T Consensus 100 ~id~~~~~~~i~~~t~ai~~~h~~---G~~~d~~~i~~~~~~~-~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K 175 (363)
T PF01041_consen 100 NIDPEALEKAITPKTKAILVVHLF---GNPADMDAIRAIARKH-GIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK 175 (363)
T ss_dssp SB-HHHHHHHHHTTEEEEEEE-GG---GB---HHHHHHHHHHT-T-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred CcCHHHHHHHhccCccEEEEecCC---CCcccHHHHHHHHHHc-CCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence 8999999999999999988877 9999999999999999 99999999999765322 2222358999998 58
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh-----------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS-----------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
.++ .. -+|+++++++++.++++..+.. ....++.++++++...++.+..+.++..++...
T Consensus 176 ~i~-~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~ 252 (363)
T PF01041_consen 176 IIT-TG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR 252 (363)
T ss_dssp SS--SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCc-CC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 874 33 3999999999999988765531 112356778888888999999999999999999
Q ss_pred HHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-HHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 269 l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
+.+.|...+.+.....+.-.. ......+.+.+++.. ...+.+.+.|...++.........+...+...
T Consensus 253 y~~~L~~~~~~~~~~~~~~~~-----------~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~ 321 (363)
T PF01041_consen 253 YREALAGIPGIKPPPIPDGAE-----------RSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYR 321 (363)
T ss_dssp HHHHHTTGTTEEEEGCGTTTE-----------EBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGT
T ss_pred HHHHHhcCCCccccccccccc-----------ccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHH
Confidence 999999888765443322110 001123566664210 13555666665555554443221121111111
Q ss_pred c-----CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 348 T-----HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 348 ~-----~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
. ....|..+. .....|-|-++..-++++++.+.++++
T Consensus 322 ~~~~~~~~~~P~ae~----l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 322 SYPYYAPGDLPNAER----LSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp TGEEEETSSSHHHHH----HHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred hcCccccCCCHHHHH----HHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 1 011222222 125788899998889999999988874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=183.71 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=116.1
Q ss_pred HHhCCC-cEEEeccHHHH-H-HHHHHhcCCC---CeEEEcCCCccchHHHHHHhcccCCcEE----EeeCCC-----CHH
Q psy12791 70 SLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG---DHIISGDDVYGGTYRYFAQVAPKIGLEV----DFVDLR-----KIE 134 (393)
Q Consensus 70 ~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g---d~vl~~~~~y~~~~~~~~~~~~~~g~~v----~~~~~~-----d~~ 134 (393)
+++|++ ++|++++|+++ + .++..+++++ +.|++.+.+|++....+...++..|+++ +.++.+ +++
T Consensus 80 ~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 159 (406)
T TIGR01814 80 RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLE 159 (406)
T ss_pred cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHH
Confidence 788876 67788777776 6 5566666654 3688888999987666665667788887 455442 667
Q ss_pred HHHhhc---CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccccccCC
Q psy12791 135 NLIKYI---KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGH 210 (393)
Q Consensus 135 ~l~~~l---~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~ 210 (393)
++++.+ .++|++|++++++|.||.++|+++|.++|+++ |+++++|++++.+.....+ ..++|+++.|.+||++|+
T Consensus 160 ~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~-g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~ 238 (406)
T TIGR01814 160 DILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAK-GALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAG 238 (406)
T ss_pred HHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHc-CCEEEEEcccccCCcccccccCCCCEEEEcCccccCCC
Confidence 777766 46799999999999999999999999999999 9999999999987654333 358999999999998767
Q ss_pred CCceEEEEEec
Q psy12791 211 SDVVMGATVTN 221 (393)
Q Consensus 211 ~G~r~G~~~~~ 221 (393)
|| +|.++.+
T Consensus 239 pG--~~l~v~~ 247 (406)
T TIGR01814 239 PG--AGAFVHE 247 (406)
T ss_pred CC--eEEEEeh
Confidence 77 5544444
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=181.95 Aligned_cols=213 Identities=22% Similarity=0.248 Sum_probs=159.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHHHHHHHhcCCCCeEEEcCCCcc---chHHHHHHhcccCCcEEEeeCCC---C
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYG---GTYRYFAQVAPKIGLEVDFVDLR---K 132 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al~~~~~~~~~gd~vl~~~~~y~---~~~~~~~~~~~~~g~~v~~~~~~---d 132 (393)
+.+..+++.+|+++|++++++++||++++.+++..+.+||+|++++.+|. +++. +....+..|+++++++.. +
T Consensus 127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~~~t~ 205 (464)
T PRK04311 127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTTNRTH 205 (464)
T ss_pred hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCCCCCC
Confidence 34578999999999999999999999988434455689999999987543 3333 345567889999999863 6
Q ss_pred HHHHHhhcCCCCcEEEEecCCCC--cc--cccCHHHHHHHHHhCCCcEEEEeCccCcc------------cccCCCCCcC
Q psy12791 133 IENLIKYIKPNTKMVWIENPTNP--LM--TVFDVKAISAVVKQHPDILLVLDNTFLTA------------YYQKSLPWGV 196 (393)
Q Consensus 133 ~~~l~~~l~~~~~~v~l~~p~np--tG--~~~~~~~l~~l~~~~~~~~livDea~~~~------------~~~~~~~~~~ 196 (393)
+++++++++++|++|++++++|| +| ...|+++|.++|+++ |+++++|.+.+.. ..+.++..|+
T Consensus 206 ~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~Ga 284 (464)
T PRK04311 206 LRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGV 284 (464)
T ss_pred HHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCCchhhHHhcCC
Confidence 88999999999999999999998 34 567999999999999 9999999954321 1122344689
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH--Hhc---CCCCCHHHHHH-----------HHhccCCHHHHHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ--NSM---GVVPSPFDCWL-----------VTRGLKTLPCRLK 260 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~ 260 (393)
|++++|.+|+++|+ .+|+++++ ++++++++... ..+ +...+++.+++ ....++.+..+++
T Consensus 285 Div~fSg~K~LgGp---~~G~i~g~-~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~ 360 (464)
T PRK04311 285 DLVTFSGDKLLGGP---QAGIIVGK-KELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPE 360 (464)
T ss_pred cEEEecCcccccCC---ceEEEEEc-HHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHH
Confidence 99999999999654 38999997 78888776311 111 22223333332 2223334666788
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy12791 261 EHERGSIEVAKFLESHP 277 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~ 277 (393)
++.++++.+.++|+.++
T Consensus 361 ~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 361 ELRARAERLAAALKAAL 377 (464)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998765
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=179.86 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=184.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc---------CCC-CeEEEcCCCccchHHHHHHhccc-----
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL---------SAG-DHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~---------~~g-d~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
..+...+|.++|+++.+.+..++++||++|+ .++.... ++| ++|+..+.+|++.......+...
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 159 (396)
T PRK04073 80 HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKR 159 (396)
T ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence 4567788999999988877899999999997 5443221 134 67888887777643222111110
Q ss_pred -CC---cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc---
Q psy12791 121 -IG---LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ--- 189 (393)
Q Consensus 121 -~g---~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~--- 189 (393)
.+ ..+..++..|++++++.+.+++++|++++++||+|.++| +++|.++|+++ |+++|+||+|..+...
T Consensus 160 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~ 238 (396)
T PRK04073 160 GFGPMLPGIKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTGKL 238 (396)
T ss_pred CCCCCCCCceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCcHH
Confidence 00 124556777899999999888999999999999999987 78999999999 9999999999963211
Q ss_pred ---CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHH
Q psy12791 190 ---KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHER 264 (393)
Q Consensus 190 ---~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 264 (393)
.......|++ ++||.+ |.+|+|+||++++ +++.+.+...........++..+..+...++.+. ...++..+
T Consensus 239 ~~~~~~~~~pdi~--~~sK~l-g~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~ 314 (396)
T PRK04073 239 FACDWDNVTPDMY--ILGKAL-GGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLE 314 (396)
T ss_pred HHhhhcCCCCCEE--Eecccc-cCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1112235655 478999 5788999999997 7888776432221222345666665555554322 12344445
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
..+.+.+.|+++.. +.+ ...++.|.++.+.+.. ....+.+.+...++.+..
T Consensus 315 ~~~~l~~~L~~l~~------~~i----------~~~~~~g~~~~~~~~~---~~~~~~~~l~~~Gv~~~~---------- 365 (396)
T PRK04073 315 LGEYFKEQLKEIDN------PMI----------KEVRGRGLFIGVELNE---PARPYCEALKEEGLLCKE---------- 365 (396)
T ss_pred HHHHHHHHHHhhcC------Ccc----------cceecceEEEEEEecc---hHHHHHHHHHHCCeEEec----------
Confidence 56666666664311 110 1113346778888742 234455555433333211
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+++||+++++..++++++.+.++|+++
T Consensus 366 -----------------~~~~~iRi~p~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 366 -----------------THETVIRFAPPLVITKEELDWAFEKIKAV 394 (396)
T ss_pred -----------------CCCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 01478999999999999999999888765
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-20 Score=175.70 Aligned_cols=307 Identities=18% Similarity=0.132 Sum_probs=203.0
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh---------cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL---------LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~---------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
+...+|++++|+++|.+..++++||++++ .++.++ +++||+|+++.++|.++ ...+...|++++.+
T Consensus 63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~----~~~v~~~G~~pv~v 138 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTT----VNPIIQNGLVPVFV 138 (438)
T ss_pred hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHH----HHHHHHcCCEEEEE
Confidence 56789999999999998899999999997 555543 58899999999999864 44556679999888
Q ss_pred CCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC--cCcEEE
Q psy12791 129 DLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW--GVDIVL 200 (393)
Q Consensus 129 ~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~--~~di~~ 200 (393)
+.+ |++++++.+.+++++|+++++ +|...++++|.++|+++ |++||+|++|+.+........ -.|+.+
T Consensus 139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~-gi~vIeDaa~a~G~~~~g~~~G~~gd~~~ 214 (438)
T PRK15407 139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKH-NLWLIEDNCDALGSTYDGRMTGTFGDIAT 214 (438)
T ss_pred ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHC-CCEEEEECccchhhhcCCeeeeccCceEE
Confidence 764 789999999889999999875 58888999999999999 999999999997654322211 238888
Q ss_pred Eccc--ccccCCCCceEEEEEecChHHHHHHHHHHHh---------------------------------------cCCC
Q psy12791 201 YSLT--KYMNGHSDVVMGATVTNDDSLQARLKFLQNS---------------------------------------MGVV 239 (393)
Q Consensus 201 ~S~s--K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~ 239 (393)
.||+ |.+. . | .+|+++++++++.++++..+.. +...
T Consensus 215 fSf~~~k~~~-~-g-eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~r 291 (438)
T PRK15407 215 LSFYPAHHIT-M-G-EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLK 291 (438)
T ss_pred EeCCCCCCcc-c-c-CceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccC
Confidence 8885 5453 1 2 3799999989998877654431 0112
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHH
Q psy12791 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEET 318 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 318 (393)
++.+++++....++.+....++..+++..+.+.|..++++. ..|..+.... ..-..+.+.+... ....
T Consensus 292 msel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~--~~~~~~~~~~---------~~~~~~~i~~~~~~~~~R 360 (438)
T PRK15407 292 ITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFL--ILPEATPNSD---------PSWFGFPITVKEDAGFTR 360 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc--ccCcCCCCCe---------eEEEEEEEEECCcCCCCH
Confidence 45566777888888888888888888889999898665421 1222111100 0001334444211 1124
Q ss_pred HHHHHhcCccccccccCCccccccCccccc-----CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMT-----HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~-----~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+++.|+..++.........+..+|.... ...+|..+.. ....|-|-++..-++++++.+.++++++.
T Consensus 361 d~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~----~~~~l~LP~~~~l~~~~v~~i~~~i~~~~ 434 (438)
T PRK15407 361 VELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRI----MNDTFWIGVYPGLTEEMLDYVIEKIEEFF 434 (438)
T ss_pred HHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHH----HhCeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 455555554454433211101111111100 1122222221 24556666666668888999999998764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=176.03 Aligned_cols=284 Identities=15% Similarity=0.124 Sum_probs=180.0
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH----hcCCCC-eEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH----LLSAGD-HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~----~~~~gd-~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..+...+++++|+++++. +.+++++|+++. .++.. ...+|+ .+++.+..|+++...+....+ .+.+++.+|.
T Consensus 89 ~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~ 166 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDH 166 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCC
Confidence 356778999999999988 889999999886 44422 222233 366777666655432233222 3568899999
Q ss_pred CCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc---c-------CCC-CCcCcEE
Q psy12791 131 RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY---Q-------KSL-PWGVDIV 199 (393)
Q Consensus 131 ~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~---~-------~~~-~~~~di~ 199 (393)
.|++++++.+.++++++++++|+||||.+.++++|.++|+++ ++++|+||+|+.+.+ . ... ..+..++
T Consensus 167 ~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~ 245 (402)
T PRK07505 167 NDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKY-GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTII 245 (402)
T ss_pred CCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEE
Confidence 999999999877789999999999999999999999999999 999999999853111 0 111 1234688
Q ss_pred EEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~ 272 (393)
++|+||.+ |.+ +||++++++++.+.++..... ++...++..+..+...++ .+..+.+...++...+...
T Consensus 246 ~~s~sK~~-~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (402)
T PRK07505 246 AASLGKAF-GAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSL 321 (402)
T ss_pred EEechhhh-hcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999 455 488776557888877654332 233344444443333322 2222233333332222222
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCc-ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTS-GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~ 351 (393)
+.. + ..+.+ .+..+.+ ++......+.+.+...++.+..+.. |.
T Consensus 322 ~~~---------~--------------~~g~~~~i~~~~~-~~~~~~~~~~~~l~~~Gi~v~~~~~------p~------ 365 (402)
T PRK07505 322 IPT---------E--------------QSGSFLPIRLIYI-GDEDTAIKAAKQLLDRGFYTSPVFF------PV------ 365 (402)
T ss_pred HHh---------c--------------CCCCCCCEEEEEe-CCHHHHHHHHHHHHHCCCeEeeecC------CC------
Confidence 110 0 01112 2334555 3444556677766555555443211 10
Q ss_pred CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 352 ~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
. .....+||++++...++++++.+.++|+++.
T Consensus 366 ~--------~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 366 V--------AKGRAGLRIMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred C--------CCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence 0 0113689999999999999999999988654
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=181.55 Aligned_cols=284 Identities=15% Similarity=0.120 Sum_probs=182.4
Q ss_pred HHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CH
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KI 133 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~ 133 (393)
.++++.+++++|.+ +++++++|+++ + .++.++ ..+||+|+++++.|++....+...++..|++++.++.+ |+
T Consensus 115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~ 194 (447)
T PRK00451 115 FEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDL 194 (447)
T ss_pred HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCH
Confidence 34456778899987 56777777765 6 555555 47899999999999875555555556689999999886 78
Q ss_pred HHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEE--eCccCcccccCCCCCcCcEEEEccccc---cc
Q psy12791 134 ENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL--DNTFLTAYYQKSLPWGVDIVLYSLTKY---MN 208 (393)
Q Consensus 134 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~liv--Dea~~~~~~~~~~~~~~di~~~S~sK~---~~ 208 (393)
+++++.+++++++|++++| ||||.+.|+++|.++|+++ |+++++ |... .+....+...++|+++.|.+|+ +
T Consensus 195 ~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~-~~~~iv~~d~~~-~g~~~~~~~~~~D~~~~s~~k~~~~~- 270 (447)
T PRK00451 195 EALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAG-GALFIVGVDPVS-LGLLKPPGEYGADIVVGEGQPLGIPL- 270 (447)
T ss_pred HHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHC-CCEEEEEcChHH-hccCCCcccCCCCEEEECCCcCCCCC-
Confidence 9999999989999999999 8999999999999999999 999988 5443 2222334457899999966664 3
Q ss_pred CCCCceEEEEEecChHHHHHHH----------------------------HHHHhcC-CCCCHHH---HHHHHhcc--CC
Q psy12791 209 GHSDVVMGATVTNDDSLQARLK----------------------------FLQNSMG-VVPSPFD---CWLVTRGL--KT 254 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~~~---~~~~~~~~--~~ 254 (393)
...|.++||++++ +++.+.+. ....... +...... ++..++.+ +.
T Consensus 271 ~~~Gpg~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g 349 (447)
T PRK00451 271 SFGGPYLGFFATR-KKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEG 349 (447)
T ss_pred CCCCCCchHHHhh-HHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHH
Confidence 2344469999987 67766531 0000001 0111111 11111111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccc-
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAES- 333 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 333 (393)
++...++..++++.+.+.|++++++..+ ++ .+..++.+.+..+ ...+.+.|...++...
T Consensus 350 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~---------------~~~~~~~v~~~~~---~~~~~~~L~~~gi~~~~ 409 (447)
T PRK00451 350 LRELAEQNHQKAHYLAERLAEIGGVELF--DG---------------PFFNEFVVRLPKP---AEEVNEALLEKGILGGY 409 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEec--CC---------------CeEEEEEEecCCC---HHHHHHHHHhcCCCCCc
Confidence 4556677777888888888877654321 11 0112233444212 2345555443322211
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+..+ . + +. .+++|+|++..+++++++.+.++|+++.
T Consensus 410 ~~~~~---~-~----------------~~-~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 410 DLGRY---Y-P----------------EL-GNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ccccc---c-C----------------Cc-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 11100 0 0 01 3689999999999999999999998763
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-20 Score=164.73 Aligned_cols=294 Identities=16% Similarity=0.173 Sum_probs=191.9
Q ss_pred CccccCCCCchHHHHHHHHHHHhC----CC---c-EEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc
Q psy12791 50 GFEYSRSNNPTRRNLERCIASLEE----AK---H-GLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP 119 (393)
Q Consensus 50 ~~~y~~~~~~~~~~lr~~la~~~~----~~---~-~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~ 119 (393)
..+|+. ..+..+|...+..+.+ .+ + .+++|+|.+ ++ .++..+++.||.|++..++|.+ .-...+
T Consensus 93 alQYg~--s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~----AL~s~~ 166 (472)
T KOG0634|consen 93 ALQYGQ--SSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPS----ALQSME 166 (472)
T ss_pred hhcccc--ccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchH----HHHhcc
Confidence 455654 4677788888888655 11 2 788888866 58 8888999999999999999986 344568
Q ss_pred cCCcEEEeeCCC----CHHHHHhhcC---------CCCcEEEE-ecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCc
Q psy12791 120 KIGLEVDFVDLR----KIENLIKYIK---------PNTKMVWI-ENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNT 182 (393)
Q Consensus 120 ~~g~~v~~~~~~----d~~~l~~~l~---------~~~~~v~l-~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea 182 (393)
..|++++.|+++ ++|.+++.+. +++++++. .+-+||||..++ .++|.++|++| ++++|+||.
T Consensus 167 a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-DfLIVeDdp 245 (472)
T KOG0634|consen 167 ALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-DFLIVEDDP 245 (472)
T ss_pred ccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-CEEEEecCc
Confidence 889999999887 5777777653 23566665 688999999998 77999999999 999999999
Q ss_pred cCccccc------------------------CCCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 183 FLTAYYQ------------------------KSLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 183 ~~~~~~~------------------------~~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
|...-+. ..+. .|+.|-..||||.+ .||+|+||+.++ +-+++++-.....
T Consensus 246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii--aPGlRlG~it~~-~~~l~ril~~ae~ 322 (472)
T KOG0634|consen 246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII--APGLRLGWITGN-SLFLKRILDLAEV 322 (472)
T ss_pred cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh--cCcceeEEeecC-HHHHHHHhhhcce
Confidence 9853221 0111 25669999999999 499999999998 6666665443332
Q ss_pred cCCCCCHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHhh-CCCc-ceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 236 MGVVPSPFDCWLVTRG---------LKTLPCRLKEHERGSIEVAKFLES-HPCV-KGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~-~~~~-~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
....++...+.++-.- ++.+.+.+..+.+++..+...|.. +|.- ..+..|. .|
T Consensus 323 ~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~----------------aG 386 (472)
T KOG0634|consen 323 ATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPK----------------AG 386 (472)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCC----------------cc
Confidence 2222333333221111 123333444555555556555543 3443 3343343 24
Q ss_pred ceEEEEEc-------CCHHHHHHHHH-hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh
Q psy12791 305 GMLSFYVN-------GGAEETRIFLE-SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376 (393)
Q Consensus 305 ~~~~~~~~-------~~~~~~~~~~~-~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~ 376 (393)
-++||+++ ++..+.+.++. .+...++.+..|..+...-... -..-++|+|+++...
T Consensus 387 mFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s----------------~~kiffRls~a~a~~ 450 (472)
T KOG0634|consen 387 MFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESS----------------WSKIFFRLSIAFAEP 450 (472)
T ss_pred eEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccC----------------CCcceEEEEeecCCH
Confidence 56899995 34444444433 3344566666666554431100 013599999999988
Q ss_pred HHHHHHHHH
Q psy12791 377 TDLIADLDQ 385 (393)
Q Consensus 377 ~~~i~~l~~ 385 (393)
|++.+.+++
T Consensus 451 e~l~~g~~r 459 (472)
T KOG0634|consen 451 EKLDEGIER 459 (472)
T ss_pred HHHHHHHHH
Confidence 766655544
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=177.52 Aligned_cols=319 Identities=12% Similarity=0.047 Sum_probs=192.8
Q ss_pred CCCCCCccCCeeeeCCCCCC----CCCccccCC--CCchHHHHHH----HHHHHhCCCcEEE-eccHHHHH-HHHHHhcC
Q psy12791 28 CVIPPIILSTTFKQNTPGQP----PQGFEYSRS--NNPTRRNLER----CIASLEEAKHGLC-YSSGLGAV-TAVTHLLS 95 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~----~~~~~y~~~--~~~~~~~lr~----~la~~~~~~~~i~-~~~G~~al-~~~~~~~~ 95 (393)
+++|.+ ++.+.++....+ .....++|+ +++...+|++ .+|+++|.+.+++ ++||+.|+ .++.++++
T Consensus 35 ~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~ 112 (416)
T PRK13034 35 ASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLK 112 (416)
T ss_pred ccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcC
Confidence 445554 344554443331 223445554 4688899998 9999999998865 58999997 78888999
Q ss_pred CCCeEEEcCCCccchHHHHHHhccc--CCcEE--EeeCC------CCHHHHHhhcCC-CCcEEEEecCCCCcccccCHHH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPK--IGLEV--DFVDL------RKIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKA 164 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~--~g~~v--~~~~~------~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~ 164 (393)
+||+|++++.+|.+.. ...++. .+... ..++. .|++++++.+.. ++++|+++.+. +|...|+++
T Consensus 113 ~GD~Vl~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~ 187 (416)
T PRK13034 113 PGDTILGMSLSHGGHL---THGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFAR 187 (416)
T ss_pred CCCEEEEcCccceeee---ecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHH
Confidence 9999999999997521 111111 11111 23333 378888887743 68888886654 478889999
Q ss_pred HHHHHHhCCCcEEEEeCccCcccccCCCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc--CC
Q psy12791 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GV 238 (393)
Q Consensus 165 l~~l~~~~~~~~livDea~~~~~~~~~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~ 238 (393)
|.++|+++ |+++++|++++.+....+.. ..+|++++|+||+++|+. +|+++++++.+.++++...... +.
T Consensus 188 l~~la~~~-g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~~~~~~~~ 263 (416)
T PRK13034 188 FREIADEV-GALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAVFPGLQGG 263 (416)
T ss_pred HHHHHHHc-CCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhcCCcccCC
Confidence 99999999 99999999988755432211 247999999999996543 6888887666666665432211 11
Q ss_pred CCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 239 VPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
...+..+..+...++ ....++++..++.+++++.|++. ++. +..+. .-..++.+.+...
T Consensus 264 ~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~-~~~~~---------------~~t~i~~v~~~~~ 326 (416)
T PRK13034 264 PLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYD-LVSGG---------------TDNHLLLVDLRPK 326 (416)
T ss_pred ccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCE-eccCC---------------CCCcEEEEEcCCC
Confidence 222222222222221 12334677788888888888765 332 11110 0135667766321
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC----CChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV----EGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~----~~~~~~i~~l~~al~~~ 390 (393)
......+.+.|...++-++.-...+....| ..+..||+|++. ..++++++.+.++++++
T Consensus 327 ~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p-----------------~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~ 389 (416)
T PRK13034 327 GLSGKDAEQALERAGITVNKNTVPGDTESP-----------------FVTSGIRIGTPAGTTRGFGEAEFREIANWILDV 389 (416)
T ss_pred CCCHHHHHHHHHhCCcEEeccCCCCCCcCC-----------------CCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHH
Confidence 112233333333323222110000001111 015689999988 55589999999888765
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 390 ~ 390 (416)
T PRK13034 390 L 390 (416)
T ss_pred H
Confidence 3
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=179.16 Aligned_cols=319 Identities=16% Similarity=0.142 Sum_probs=192.5
Q ss_pred CCCC-CC--CCCCCccC-CeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCC
Q psy12791 23 QWRS-QC--VIPPIILS-TTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSA 96 (393)
Q Consensus 23 ~~~~-~~--~~~p~~~~-~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~ 96 (393)
+++| .+ ..+++++. +.+.+++.+.+... +....|+++...++.+.++++.+.+..+++++|++++ .++..+...
T Consensus 40 ~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~ 119 (396)
T PRK02627 40 EYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKY 119 (396)
T ss_pred EEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHH
Confidence 4556 22 25667764 55555544432211 1223456788889999999988876666667777777 555543322
Q ss_pred C-------CeEEEcCCCccchHHHHHHhccc---------CCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc-c
Q psy12791 97 G-------DHIISGDDVYGGTYRYFAQVAPK---------IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT-V 159 (393)
Q Consensus 97 g-------d~vl~~~~~y~~~~~~~~~~~~~---------~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~-~ 159 (393)
+ ++|++.+++|++........... ....+..++..|++++++.+.+++++|++++++||+|. +
T Consensus 120 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~ 199 (396)
T PRK02627 120 GHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNP 199 (396)
T ss_pred hcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCcc
Confidence 2 67999999997532211111100 01123445556899999999888999999999999994 5
Q ss_pred cC---HHHHHHHHHhCCCcEEEEeCccCccccc-C--C---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 160 FD---VKAISAVVKQHPDILLVLDNTFLTAYYQ-K--S---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 160 ~~---~~~l~~l~~~~~~~~livDea~~~~~~~-~--~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
++ +++|.++|+++ |+++|+||+|..+... . . .....|++ ++||.+ | +|+|+||++++ +++++.+.
T Consensus 200 ~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~-~-~G~rig~~~~~-~~~~~~~~ 273 (396)
T PRK02627 200 ADKEYLQALRELCDEN-GILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGL-G-GGVPIGAVLAK-EKVADVFT 273 (396)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchh-h-CCcccEEEEEc-HHHHhccC
Confidence 54 89999999999 9999999999864221 1 1 11224544 689999 5 79999999997 77777664
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
..........++..+..+...++.+. ...++..+....+.+.|++... .++.. ...++.|.+++
T Consensus 274 ~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~----------~~~~~~g~~~~ 339 (396)
T PRK02627 274 PGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLE----KYPGI----------KEVRGLGLMIG 339 (396)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH----hCCCe----------eeeccCcEEEE
Confidence 32222223345666666555544322 1233444444444454443210 00110 01123467788
Q ss_pred EEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
+.+. . ....+.+.+...++.+..+ ..+++|+++++..++++++.+.+.|+
T Consensus 340 i~~~-~--~~~~~~~~l~~~Gv~v~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~ 389 (396)
T PRK02627 340 IELD-R--PAAEIVKKALEKGLLINVT---------------------------GDNVLRLLPPLIISKEEIDEAVDRLE 389 (396)
T ss_pred EEec-C--cHHHHHHHHHHCCeEEeec---------------------------CCCEEEEECCcccCHHHHHHHHHHHH
Confidence 8883 1 2345555554334443321 13679999988888888887777776
Q ss_pred Hhh
Q psy12791 389 KAC 391 (393)
Q Consensus 389 ~~~ 391 (393)
++.
T Consensus 390 ~~l 392 (396)
T PRK02627 390 EVL 392 (396)
T ss_pred HHH
Confidence 543
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=187.86 Aligned_cols=314 Identities=14% Similarity=0.063 Sum_probs=192.7
Q ss_pred CchHHHHHHHHHHHhCCC--c-EEEeccHHHH-H-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 58 NPTRRNLERCIASLEEAK--H-GLCYSSGLGA-V-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~-~i~~~~G~~a-l-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
....++.|+.+|+++|++ + .|++|+|+++ + .++..+ +++||+|+++.-.|.+... +...++..|+++..++.+
T Consensus 77 ~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~-~~~~a~~~G~~v~~v~~~ 155 (805)
T PLN02724 77 SDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLG-IREYALEKGAAAIAVDIE 155 (805)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHH-HHHHHHHcCCeEEeccch
Confidence 345788999999999985 3 5788888776 7 444454 6789999999888887664 456667889999998764
Q ss_pred -------------C--HHHHHhhc----------CCCCcEEEEecCCCCcccccCHHHHHHHHHhC-------CCcEEEE
Q psy12791 132 -------------K--IENLIKYI----------KPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-------PDILLVL 179 (393)
Q Consensus 132 -------------d--~~~l~~~l----------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-------~~~~liv 179 (393)
+ .+++++.+ .+++++|.+++.+|.||.++|++++..+++.. .++++++
T Consensus 156 ~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~v 235 (805)
T PLN02724 156 EAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLL 235 (805)
T ss_pred hccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEe
Confidence 1 13454442 24578999999999999999999775555532 0358999
Q ss_pred eCccCcccccCCCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC---------------------
Q psy12791 180 DNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG--------------------- 237 (393)
Q Consensus 180 Dea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~--------------------- 237 (393)
|.+++.++....+. .++|+++.|+||+++||.| +|+++.+ +++.+.+.......+
T Consensus 236 DaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr-~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~r 312 (805)
T PLN02724 236 DAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVR-RDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQR 312 (805)
T ss_pred ehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEe-hhhhhhhcCCccCCCceEEEecccceeeccccHHHH
Confidence 99999877643332 5899999999999966889 9999998 666665542211111
Q ss_pred ---CCCCHHHHHHHHhccCCH-----HHHHHHHHHHHHHHHHHHhhCC------CcceEeCCCCCCCcchHHHhhhcCCC
Q psy12791 238 ---VVPSPFDCWLVTRGLKTL-----PCRLKEHERGSIEVAKFLESHP------CVKGVLHPGLPSHPNHELAKSQWSGT 303 (393)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~------~~~~v~~~~l~~~~~~~~~~~~~~~~ 303 (393)
++.+......+..+++.+ ....++..+..+++.+.|.+++ .+. +.-+.-.. . +....
T Consensus 313 fE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~-iyg~~~~~-~-------~~~~r 383 (805)
T PLN02724 313 FEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCV-LYGNHTFK-L-------EFHIQ 383 (805)
T ss_pred hcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEE-EcCCCCCC-C-------Ccccc
Confidence 111111111222222222 2222333344556666666554 121 21111000 0 00124
Q ss_pred cceEEEEEcC------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh---------------hHhhcCC
Q psy12791 304 SGMLSFYVNG------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE---------------TRDALGI 362 (393)
Q Consensus 304 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~---------------~~~~~g~ 362 (393)
+++++|.+.+ ...++..+.+. .++.+..|..|... ....+..+... .....+.
T Consensus 384 ~~ivsFnv~~~~~~~v~~~~v~~l~~~---~gI~vR~G~~Ca~~---~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~ 457 (805)
T PLN02724 384 GPIVTFNLKRADGSWVGHREVEKLASL---SGIQLRTGCFCNPG---ACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGR 457 (805)
T ss_pred cCEEEEEEEcCCCCEeCHHHHHHHHHh---cCcEEeeccccCch---HHHHHcCCCHHHHHHHhhcCCccCchhheecCc
Confidence 6899998864 13345555443 35667766554311 11000000000 0000122
Q ss_pred CCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 363 ~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+.||+|+++++|.++|++|.++|++.
T Consensus 458 ~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 458 PTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred ccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999999874
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-20 Score=173.73 Aligned_cols=285 Identities=19% Similarity=0.151 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh----cCCCC----eEEEcCCCccchHHHHHHhccc----CC-
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL----LSAGD----HIISGDDVYGGTYRYFAQVAPK----IG- 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~----~~~gd----~vl~~~~~y~~~~~~~~~~~~~----~g- 122 (393)
..+...++.++|+++.+.+..++++||++|+ .++... ..+|| +|++.++.|++........... .+
T Consensus 71 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 150 (389)
T PRK01278 71 RIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGF 150 (389)
T ss_pred CChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccC
Confidence 4577889999999988666788888889887 554432 35665 8999999998754322211000 00
Q ss_pred ----cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc-ccC---HHHHHHHHHhCCCcEEEEeCccCcccc-cCC--
Q psy12791 123 ----LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT-VFD---VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-- 191 (393)
Q Consensus 123 ----~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~-~~~---~~~l~~l~~~~~~~~livDea~~~~~~-~~~-- 191 (393)
..+..++..|++++++.+.+++++|+++.++|++|. ++| +++|.++|++| |+++|+||+|..+.. ...
T Consensus 151 ~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~ 229 (389)
T PRK01278 151 GPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTGKLFA 229 (389)
T ss_pred CCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCccee
Confidence 112334556899999999888999999999999994 444 89999999999 999999999985422 111
Q ss_pred ---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHH
Q psy12791 192 ---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGS 266 (393)
Q Consensus 192 ---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 266 (393)
.....|+ .|++|.+ | +|+|+||++++ +++.+.+...........++..+..+...++.+. ...+...+..
T Consensus 230 ~~~~~~~pdi--~t~sK~l-~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~ 304 (389)
T PRK01278 230 HEWAGVTPDI--MAVAKGI-G-GGFPLGACLAT-EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG 304 (389)
T ss_pred ecccCCCCCE--EEEehhc-c-CCcceEEEEEc-HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1123454 4789999 4 78999999997 7777766433222233356666666655554331 1233444444
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
..+.+.|+.+.. .++. + ....++.|.++++.+.. ....+.+.+...++.+.++
T Consensus 305 ~~l~~~l~~l~~----~~~~--------~-~~~v~g~G~~~~i~~~~---~~~~~~~~l~~~GV~~~p~----------- 357 (389)
T PRK01278 305 LYLKQKLEGLVD----RFPD--------V-IEEVRGKGLLLGLKCVV---PNRDLVQALRDEGLLTVGA----------- 357 (389)
T ss_pred HHHHHHHHHHHh----hCCC--------c-eeeEecccEEEEEEEec---CHHHHHHHHHHCCeEEeec-----------
Confidence 455555543210 0010 0 00113345677877732 2344555544334332221
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+.+||+++...++++++.+.+.|+++
T Consensus 358 ----------------~~~~lR~~p~~~~~~~~i~~~l~~l~~~ 385 (389)
T PRK01278 358 ----------------GDNVVRLLPPLIITEEEIDEALERLERA 385 (389)
T ss_pred ----------------CCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 1478999998877777777777777654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=176.82 Aligned_cols=162 Identities=20% Similarity=0.231 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCc-EEEeccHHHH-HH-HH--H-HhcCCCC----eEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 61 RRNLERCIASLEEAKH-GLCYSSGLGA-VT-AV--T-HLLSAGD----HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~-~i~~~~G~~a-l~-~~--~-~~~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..++++.+++++|.++ .+..++|+++ +. +. . .+.++|| +|++++++|+. +...++..|++++.++.
T Consensus 115 ~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~----~~~~~~~~G~~vv~v~~ 190 (481)
T PRK04366 115 MYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGT----NPASAAMAGFKVVEIPS 190 (481)
T ss_pred HHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHh----HHHHHHHcCCEEEEeec
Confidence 3566777888899874 5555778776 33 22 2 2356676 99999999985 45557789999999887
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccc-cCHHHHHHHHHhCCCcEEEEeCccCcccc--cCCCCCcCcEEEEc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVLDNTFLTAYY--QKSLPWGVDIVLYS 202 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~livDea~~~~~~--~~~~~~~~di~~~S 202 (393)
+ |++++++.+++++++|++++|| |||.+ .|+++|.++|+++ |+++++|+++..... ..+...|+|++++|
T Consensus 191 ~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~-gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~ 268 (481)
T PRK04366 191 NEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEA-GGLLYYDGANLNAILGKARPGDMGFDVVHLN 268 (481)
T ss_pred CCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHc-CCEEEEEecChhhhcccCCccccCCCEEEEe
Confidence 4 7899999998899999999998 99987 4799999999999 999999999864321 13445789999999
Q ss_pred ccccccCCCC---ceEEEEEecChHHHHHH
Q psy12791 203 LTKYMNGHSD---VVMGATVTNDDSLQARL 229 (393)
Q Consensus 203 ~sK~~~G~~G---~r~G~~~~~~~~~~~~~ 229 (393)
.||+++++.| --+|+++++ +++.+.+
T Consensus 269 ~hK~l~~P~g~Ggp~~G~l~~~-~~~~~~l 297 (481)
T PRK04366 269 LHKTFSTPHGGGGPGSGPVGVK-EELAPFL 297 (481)
T ss_pred chhhcCCCCCCCCCCeeeeeeh-hhhHhhC
Confidence 9999863321 128899887 5666554
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=167.28 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=148.8
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
++++..+||+++++++|.+..+++.+|+.++ .++.++++|||.| +++|.|.+ +.......|++++.++.+
T Consensus 51 ~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~----~~~~i~~~Ga~pv~v~i~~~~~ 125 (431)
T cd00617 51 GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDT----TRGHIEANGAVPVDLVIDEAHD 125 (431)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccc----hHHHHHhCCCEeEEEecccccc
Confidence 4678899999999999999999999999997 7788889999977 68888875 445567789888877652
Q ss_pred -----------CHHHHHhhcCCC----CcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEEEeCccCcc------
Q psy12791 132 -----------KIENLIKYIKPN----TKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLVLDNTFLTA------ 186 (393)
Q Consensus 132 -----------d~~~l~~~l~~~----~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~livDea~~~~------ 186 (393)
|++++++.+.++ +++|++++|+||+ |.+++ +++|.++|+++ |++||.|+++...
T Consensus 126 ~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 126 AQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVLDAARFAENAYFIK 204 (431)
T ss_pred cccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhHhhhhhhh
Confidence 688999999865 7899999999998 89987 45779999999 9999999996532
Q ss_pred -----cccCCC-------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q psy12791 187 -----YYQKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-----MGVVPSPFDCWLVT 249 (393)
Q Consensus 187 -----~~~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 249 (393)
....++ ....|.+..|++|... .+ .+||+++++++++++++..... ..+..+..+...+.
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~-~~--~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A 281 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL-VN--IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALA 281 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCC-Cc--cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHH
Confidence 111111 0135666667777652 22 1789999877798888743311 11222333333322
Q ss_pred hccCCH--HHHHHHHHHHHHHHHHHHhhC
Q psy12791 250 RGLKTL--PCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 250 ~~~~~~--~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+++.. ....++..++++.+.+.|++.
T Consensus 282 ~gL~e~~~~~~l~~~~~~r~~l~~~L~~~ 310 (431)
T cd00617 282 QGLREAVEEDYLRHRVEQVRYLGDRLDEA 310 (431)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence 233221 234455555667788888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=172.49 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=125.4
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
+|+....++++.+|+++|.++.+++++|+++ + .++.+++++||+|+++.++|.+.+ ..+...|+++++++.+
T Consensus 56 ~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~----~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 56 DPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVI----NGLVLSGAVPVYLKPERN 131 (294)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHH----HHHHHCCCEEEEecCccC
Confidence 3567789999999999999888887888765 6 777888999999999999998643 3455678888887542
Q ss_pred ---------CHHHHHhhcC--CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---CC---CCC
Q psy12791 132 ---------KIENLIKYIK--PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---KS---LPW 194 (393)
Q Consensus 132 ---------d~~~l~~~l~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---~~---~~~ 194 (393)
|++++++.+. +++++|++++| |++|.++|+++|.++|+++ |+++++||+|+..... .+ ...
T Consensus 132 ~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~-g~~livDeA~~~~~~~~~~~~~~~~~~ 209 (294)
T cd00615 132 PYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHR-GLPVLVDEAHGAHFRFHPILPSSAAMA 209 (294)
T ss_pred cccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhc-CCeEEEECcchhhhccCcccCcchhhc
Confidence 6888998885 46899999999 6899999999999999999 9999999999863211 11 124
Q ss_pred cCcEEEEcccccccCCCCceEEEEEec
Q psy12791 195 GVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
++|+++.|+||+++|+.+ +|++..+
T Consensus 210 ~~div~~S~hK~l~g~~~--~~~l~~~ 234 (294)
T cd00615 210 GADIVVQSTHKTLPALTQ--GSMIHVK 234 (294)
T ss_pred CCcEEEEchhcccchHhH--HHHHHhC
Confidence 789999999999854432 4555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=171.31 Aligned_cols=282 Identities=15% Similarity=0.113 Sum_probs=176.9
Q ss_pred chHHHHHHHHHHHhCCC--cEEE-ec-cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHH-hcccCCc-EEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLC-YS-SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQ-VAPKIGL-EVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~-~~-~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~-~~~~~g~-~v~~~~~~ 131 (393)
...++.|+.++++++.+ +.++ ++ ||+.++ .++..++++++.+++..-.|+.. +.. +++.+|+ +++.++.+
T Consensus 48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~~g~f~~~---~~~~~~~~~g~~~v~~~~~~ 124 (378)
T PRK03080 48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLAWESFGSK---WATDVVKQLKLEDPRVLEAD 124 (378)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEEeCHHHHH---HHHHHHhhcCCCCceEeccC
Confidence 45678999999999974 3444 54 667778 66667777533344445667652 333 3466788 88877654
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEccccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKY 206 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~ 206 (393)
|+++ ++. +++|.++|..|.||..+|+++|.+ +++ |+++++|.+++.+.....+. ..|+++.|.+||
T Consensus 125 ~g~~~d~~~----i~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~-g~~~vVDa~qs~G~~pidv~-~iD~~~~s~~K~ 195 (378)
T PRK03080 125 YGSLPDLSA----VDF-DRDVVFTWNGTTTGVRVPVARWIG--ADR-EGLTICDATSAAFALPLDWS-KLDVYTFSWQKV 195 (378)
T ss_pred CCCCCCHhh----cCC-CCCEEEEecCCccceeccchhhcc--ccC-CCeEEEecccccccCCCCHH-HCcEEEEehhhh
Confidence 4444 332 677999999999999999999999 778 99999999999776533333 379999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHH-------------------hc-C-C--CCCHHHHHHHHhccC------CHHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQN-------------------SM-G-V--VPSPFDCWLVTRGLK------TLPC 257 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------------------~~-~-~--~~~~~~~~~~~~~~~------~~~~ 257 (393)
++|++| +|+++.+ ++.++++..... .+ + . .++....+.+...++ .++.
T Consensus 196 l~~P~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~ 272 (378)
T PRK03080 196 LGGEGG--HGMAILS-PRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDA 272 (378)
T ss_pred CCCCCc--eEEEEEC-HHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 988899 9999998 777776542110 00 1 1 111111111112221 3444
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCC
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
+.++..+..+.+.++|++.+.+..+. +. +. ...+.++.|.+++. +.....+...+...++.+..|+
T Consensus 273 i~~r~~~l~~~l~~~l~~~~~~~~~~-~~-~~-----------~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~ 339 (378)
T PRK03080 273 LIARTAANASVLYDWAEKTPWATPLV-AD-PA-----------TRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEP 339 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccc-CC-cc-----------ccCccEEEEEcCCchHHHHHHHHHHHHHcCCeecccc
Confidence 55666666777788887665432111 10 00 01135788887530 0111223333322233333332
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.. ...+.+|+|++.++++++++++.++|+++.
T Consensus 340 ~~-----------------------~~~~~vRis~~~~~t~~di~~l~~al~~~~ 371 (378)
T PRK03080 340 YR-----------------------DAPNGLRIWCGPTVEPADVEALTPWLDWAF 371 (378)
T ss_pred cc-----------------------CCCCcEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 11 014789999999999999999999998753
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-19 Score=168.08 Aligned_cols=285 Identities=15% Similarity=0.133 Sum_probs=180.3
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh---c-----CCCCeEEEcCCCccchHHHHHHh---------cc
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL---L-----SAGDHIISGDDVYGGTYRYFAQV---------AP 119 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~---~-----~~gd~vl~~~~~y~~~~~~~~~~---------~~ 119 (393)
.+...++.+.|+++.+.+..++++||++|+ .++... . ...+.|+..+..|++........ ..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 160 (403)
T PRK05093 81 NEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFG 160 (403)
T ss_pred CHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCC
Confidence 455678999999988777899999999986 444321 1 12356887887777643211111 11
Q ss_pred cCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc-C----HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-
Q psy12791 120 KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF-D----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL- 192 (393)
Q Consensus 120 ~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~-~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~~- 192 (393)
.....+..++.+|++++++.+.+++++|+++ |.||+|.+. + +++|.++|++| |+++|+||+|..+... .+.
T Consensus 161 ~~~~~~~~~~~~d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~ 238 (403)
T PRK05093 161 PKPADITHVPFNDLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTGDLFA 238 (403)
T ss_pred CCCCCcEEeCCCCHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccchh
Confidence 1223467778889999999998888999988 666776654 3 89999999999 9999999999864221 111
Q ss_pred ----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHH
Q psy12791 193 ----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGS 266 (393)
Q Consensus 193 ----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 266 (393)
....| +.|+||.+ | +|+|+||++++ +++.+.+...........++..+..+...++.+ ....++..++.
T Consensus 239 ~~~~~~~pd--i~s~sK~l-~-~G~rig~vv~~-~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~ 313 (403)
T PRK05093 239 YMHYGVTPD--ILTSAKAL-G-GGFPIGAMLTT-AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARR 313 (403)
T ss_pred hhhcCCCCC--EEEecccc-c-CCcceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 12245 45899999 5 79999999998 788777753222222234566655554433222 22345556666
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
+.+.+.|+++..- ++. + ...++.|.++++.+... ......|.+.+...++.+..+
T Consensus 314 ~~l~~~L~~~~~~----~~~---------~-~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---------- 369 (403)
T PRK05093 314 QRFVDGLQKINQK----YGV---------F-SEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA---------- 369 (403)
T ss_pred HHHHHHHHHHHhh----CCC---------e-EeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecC----------
Confidence 6777777653110 000 0 01123456788888422 124556666654434333210
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+++|+++++..++++++.+.+.|.++
T Consensus 370 -----------------g~~~lRl~~~~~~~~~~i~~~~~~l~~~ 397 (403)
T PRK05093 370 -----------------GPDVLRFAPSLVIEEADIDEGLARFEKA 397 (403)
T ss_pred -----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1478999999987788777777777654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=166.02 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=176.7
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH-h-cCCCCeEEEcCCCccchHHHHHHhcccCC---------cEEE
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH-L-LSAGDHIISGDDVYGGTYRYFAQVAPKIG---------LEVD 126 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~-~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g---------~~v~ 126 (393)
+...++.+.+++..+.+..+++++|++++ .++.. . ...+++|++.++.|++............. ..+.
T Consensus 71 ~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (377)
T PRK02936 71 SLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFT 150 (377)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCce
Confidence 44445555555544445678889999987 55542 2 23346789988888764322211111000 1345
Q ss_pred eeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcC
Q psy12791 127 FVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGV 196 (393)
Q Consensus 127 ~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~ 196 (393)
.++.+|++++++.+.+++++|+++.+++++|...+ +++|.++|++| |+++|+||+|..+... .+. ....
T Consensus 151 ~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~~~~~~~~~~ 229 (377)
T PRK02936 151 HVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTGTLFAYEQFGLDP 229 (377)
T ss_pred EeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchhhHHHhhCCCC
Confidence 66777899999999888999999999999988754 99999999999 9999999999753211 111 1234
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHh
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~ 274 (393)
|++ ++||.+ | +|+|+||++++ +++.+.+...........++..+..+...++.+ ...+++..++...+.+.|+
T Consensus 230 di~--t~sK~l-~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 304 (377)
T PRK02936 230 DIV--TVAKGL-G-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQ 304 (377)
T ss_pred cEE--EEcccc-c-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 554 689999 5 78999999997 788877643222222234666666665555443 2345555666666666665
Q ss_pred hC----CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCC
Q psy12791 275 SH----PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350 (393)
Q Consensus 275 ~~----~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~ 350 (393)
+. +.+..+ ++.|.++++.+..+ ...+.+.+...++.+..+
T Consensus 305 ~~~~~~~~~~~v------------------~~~g~~~~i~~~~~---~~~~~~~l~~~gv~v~~~--------------- 348 (377)
T PRK02936 305 EELEHLECVKNI------------------RGKGLMIGIECTEE---VAPVIEQLREEGLLVLSA--------------- 348 (377)
T ss_pred HHHhhCCcEEeE------------------eecceEEEEEecch---HHHHHHHHHHCCeEEecC---------------
Confidence 42 221111 12356789998422 445555554433332110
Q ss_pred CCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 351 ~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++||++++...++++++.+.+.|+++
T Consensus 349 ------------g~~~lRi~p~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 349 ------------GPNVIRLLPPLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred ------------CCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 1478999998888888888888777653
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=166.54 Aligned_cols=283 Identities=18% Similarity=0.154 Sum_probs=175.7
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc----------CCCCeEEEcCCCccchHHHHHHhccc------
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL----------SAGDHIISGDDVYGGTYRYFAQVAPK------ 120 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~----------~~gd~vl~~~~~y~~~~~~~~~~~~~------ 120 (393)
.+...++++.++++.+.+..++++||+.|. .++.... ..+++|++.+-.|++...........
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~ 151 (400)
T PTZ00125 72 NDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN 151 (400)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence 457788999999988888899999999986 5554331 13467888888877643221111110
Q ss_pred ---CCcEEEeeCCCCHHHHHhhcC-CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC
Q psy12791 121 ---IGLEVDFVDLRKIENLIKYIK-PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS 191 (393)
Q Consensus 121 ---~g~~v~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~ 191 (393)
....+..++..|++++++.+. +++++|++++++||||.+.| +++|.++|++| |+++|+||+|..+.. ...
T Consensus 152 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G~~ 230 (400)
T PTZ00125 152 FGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTGKL 230 (400)
T ss_pred CCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchh
Confidence 001234556668999999986 57899999999999999998 99999999999 999999999974311 111
Q ss_pred -----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHH
Q psy12791 192 -----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHER 264 (393)
Q Consensus 192 -----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 264 (393)
.....|+++ ++|+++ .++.|+||++++ +++.+.+...........++..+..+...++.+.. ..++..+
T Consensus 231 ~~~~~~~~~pd~~~--~sK~l~-~g~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~ 306 (400)
T PTZ00125 231 LAHDHEGVKPDIVL--LGKALS-GGLYPISAVLAN-DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQR 306 (400)
T ss_pred hHHHhcCCCCCEEE--Eccccc-CCCcCcEEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 112346664 679994 444589999997 78888765322211223355555555444433221 1223333
Q ss_pred HHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccc
Q psy12791 265 GSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 265 ~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
..+.+.+.|++. +.+..+ .+.|.++++.++. +......+.+.+...++.+.++
T Consensus 307 ~~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~---- 364 (400)
T PTZ00125 307 LGEVFRDGLKELLKKSPWVKEI------------------RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT---- 364 (400)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE------------------ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeec----
Confidence 344444444432 211111 2236677888842 2334555666654434333211
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+++|||+++...++++++.+.+.|.++
T Consensus 365 -----------------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~ 392 (400)
T PTZ00125 365 -----------------------HDNIIRFAPPLVITKEQLDQALEIIKKV 392 (400)
T ss_pred -----------------------CCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 1478999998777777777666666543
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-18 Score=162.88 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=182.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--c------CCCCeEEEcCCCccchHHHHHHhcc-------
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--L------SAGDHIISGDDVYGGTYRYFAQVAP------- 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--~------~~gd~vl~~~~~y~~~~~~~~~~~~------- 119 (393)
++.+...+|.++|+++.+.+...+++||++|. .++... . ...+.|+..+..|++..........
T Consensus 74 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~ 153 (397)
T TIGR03246 74 YTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQG 153 (397)
T ss_pred cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccC
Confidence 34567889999999998877899999999996 444322 1 1235677777777764322111111
Q ss_pred --cCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-c---
Q psy12791 120 --KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-Q--- 189 (393)
Q Consensus 120 --~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~--- 189 (393)
.....+..++.+|++++++.+.+++++|+++.++++.|...+ +++|.++|++| |+++|+||+|..+-. .
T Consensus 154 ~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G~~~ 232 (397)
T TIGR03246 154 FAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTGELY 232 (397)
T ss_pred CCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccccch
Confidence 011245667778999999999888999999988877786653 99999999999 999999999954311 0
Q ss_pred --CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHH
Q psy12791 190 --KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERG 265 (393)
Q Consensus 190 --~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 265 (393)
.......|++ +++|.+ | .|+++|+++++ +++.+.+...........++..+..+...++.+ ....++..++
T Consensus 233 a~~~~gv~pDi~--t~~K~l-g-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~ 307 (397)
T TIGR03246 233 AYMHYGVTPDIL--TSAKAL-G-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQR 307 (397)
T ss_pred hhhhcCCCCCEE--Eeehhh-h-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 1112245665 789999 4 58999999997 788776643211111123555555554444322 2245555566
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+.+.+.|+++.. .++- ..+.++.|.++.+.+... ......+.+.+...++-+..
T Consensus 308 ~~~l~~~L~~l~~----~~~~----------~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~---------- 363 (397)
T TIGR03246 308 HDLFVDGLEKINA----RYNV----------FSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI---------- 363 (397)
T ss_pred HHHHHHHHHHHHh----cCCC----------eEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEee----------
Confidence 6666666664321 0000 011134566777777321 23455666655443332211
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++.+|+++++..++++++.+.++|++.
T Consensus 364 -----------------~g~~~lR~~p~~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 364 -----------------AGPNVVRFAPSLVISDDDIDEGLARFERA 392 (397)
T ss_pred -----------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 01468999999999988888888887654
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-18 Score=160.56 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=178.7
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--c------CCCCeEEEcCCCccchHHHHHHhcccC-----
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--L------SAGDHIISGDDVYGGTYRYFAQVAPKI----- 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--~------~~gd~vl~~~~~y~~~~~~~~~~~~~~----- 121 (393)
+.++...+|.++|+++.+.+..++++||++|+ .++... . ..+++|+..+..|++.......+....
T Consensus 78 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 157 (406)
T PRK12381 78 YTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQD 157 (406)
T ss_pred cCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccC
Confidence 34566788999999988777788889999986 444321 1 134678888888887542211111100
Q ss_pred -C---cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc--C---HHHHHHHHHhCCCcEEEEeCccCcccc-cCC
Q psy12791 122 -G---LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF--D---VKAISAVVKQHPDILLVLDNTFLTAYY-QKS 191 (393)
Q Consensus 122 -g---~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~--~---~~~l~~l~~~~~~~~livDea~~~~~~-~~~ 191 (393)
+ ..+..++..|++++++.+.+++++|+++ |.|++|.+. | +++|.++|++| |+++|+||+|..+.. ...
T Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G~~ 235 (406)
T PRK12381 158 FAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTGEL 235 (406)
T ss_pred CCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCcch
Confidence 0 1245566779999999998788888885 788887654 2 89999999999 999999999965311 111
Q ss_pred -----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHH
Q psy12791 192 -----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHER 264 (393)
Q Consensus 192 -----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 264 (393)
.....|+ .|++|.+ | +|+|+|+++++ +++.+.+...........++..+..+...++.+. ..+++..+
T Consensus 236 ~~~~~~~v~pDi--~t~sK~l-~-gG~~ig~~~~~-~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~ 310 (406)
T PRK12381 236 YAYMHYGVTPDV--LTTAKAL-G-GGFPIGAMLTT-EKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQ 310 (406)
T ss_pred hhhHhhCCCCCE--EEehhhh-h-CCCceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 1123455 5899999 4 68999999997 7888776532222222345666655555443322 23455555
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccC
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
+.+.+.+.|+++.. .++. ..+.++.|.++++.+... ......+.+.+...++.+...
T Consensus 311 ~~~~l~~~L~~l~~----~~~~----------~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-------- 368 (406)
T PRK12381 311 RHDWFVERLNTINA----RYGL----------FSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-------- 368 (406)
T ss_pred HHHHHHHHHHHHHh----hCCC----------EEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC--------
Confidence 66666666654310 0000 011134567788888421 124456666555444333210
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++.||++++...++++++.+.+.|+++
T Consensus 369 -------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~~ 396 (406)
T PRK12381 369 -------------------GPNVVRFAPALNISEEEITTGLDRFARA 396 (406)
T ss_pred -------------------CCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 1468999999877777777666666543
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=152.49 Aligned_cols=241 Identities=17% Similarity=0.198 Sum_probs=173.7
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEE-EeccHHHHH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGL-CYSSGLGAV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i-~~~~G~~al-~~~~~~~~~gd~vl~~~ 104 (393)
..-|...++.+.+++..... ...+.--.....++.+.|...++.+ +.+ +.++|+.++ .++..+++|||+|++..
T Consensus 10 ~PGP~~v~~~V~~am~~~~~--~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~ 87 (383)
T COG0075 10 TPGPVPVPPRVLLAMARPMV--GHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVV 87 (383)
T ss_pred eCCCCCCCHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEe
Confidence 34455566667766655411 1122111245677888888889877 444 447778888 88889999999998877
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
....+. .+.++++++|.+++.+... |+++++++++. +.++|.++|.-.+||...|+++|.+++++| |.++
T Consensus 88 nG~FG~--R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~-g~l~ 164 (383)
T COG0075 88 NGKFGE--RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH-GALL 164 (383)
T ss_pred CChHHH--HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHc-CCEE
Confidence 655443 5788899999999988775 89999999984 478999999999999999999999999999 9999
Q ss_pred EEeCccCcccccCC-CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH------------HHhc---CCCC-
Q psy12791 178 VLDNTFLTAYYQKS-LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL------------QNSM---GVVP- 240 (393)
Q Consensus 178 ivDea~~~~~~~~~-~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~------------~~~~---~~~~- 240 (393)
|||.+-+.+..... .+++.|+++.+..|+++++|| +|++..+ ++..+.+... ..++ +..+
T Consensus 165 iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPG--la~v~~S-~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~ 241 (383)
T COG0075 165 IVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPG--LAFVAVS-ERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY 241 (383)
T ss_pred EEEecccCCCcccchhhcCccEEEecCchhccCCCc--cceeEEC-HHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCC
Confidence 99999886544333 347899999999999999999 9999987 6555555321 1111 1111
Q ss_pred -CHHHHHH-HHhcc-----CCHHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 241 -SPFDCWL-VTRGL-----KTLPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 241 -~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
.+....+ +...+ +.++.+++++..+...+++.++...
T Consensus 242 Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alG 285 (383)
T COG0075 242 TPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALG 285 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1222211 11122 3367788999999999999888653
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=163.37 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=171.5
Q ss_pred HHHHHHHHhCCC-cEEEe----ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhc------ccCCcEEEeeCCC
Q psy12791 64 LERCIASLEEAK-HGLCY----SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVA------PKIGLEVDFVDLR 131 (393)
Q Consensus 64 lr~~la~~~~~~-~~i~~----~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~------~~~g~~v~~~~~~ 131 (393)
.|+.++++++++ +.+.+ ++|+++. .++.+++++||+|++.+..|++......... ...+.++..++.+
T Consensus 85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 164 (452)
T PTZ00094 85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN 164 (452)
T ss_pred HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence 567899999987 44433 4688776 6678889999999999888876432211110 0112344454444
Q ss_pred -----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC-----CCCCcCcEEE
Q psy12791 132 -----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK-----SLPWGVDIVL 200 (393)
Q Consensus 132 -----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~-----~~~~~~di~~ 200 (393)
|++++++.+.+ ++++|++. ++.+|...|+++|.++|+++ |+++++|++|+.+.... ++ .++|+++
T Consensus 165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~-ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~ 240 (452)
T PTZ00094 165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSV-GAYLMADIAHTSGLVAAGVLPSPF-PYADVVT 240 (452)
T ss_pred CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHc-CCEEEEeccchhccccCCCCCCCC-CCCcEEE
Confidence 88999998854 57777764 34589999999999999999 99999999999876522 22 2689999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHH-----HhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-----NSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVA 270 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 270 (393)
.|+|||+.|+. +|+++++ +.+.+.+.... ..+.+...+...+.+..+++ ......++..+++..+.
T Consensus 241 ~S~hK~l~GP~---Gg~l~~~-~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~ 316 (452)
T PTZ00094 241 TTTHKSLRGPR---SGLIFYR-KKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALA 316 (452)
T ss_pred cCCccCCCCCC---ceEEEEe-cccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 99999997765 4667766 44433332111 11111222222222222222 23345566667778888
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCcccccC
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTH 349 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~ 349 (393)
+.|... ++. +..++ .. ....++.|...+ +.+.....++.. ++.++.-+. .+.+.
T Consensus 317 ~~L~~~-g~~-v~~~~-~~------------~~~~~v~~~~~~~~~~~~~~~L~~~---gI~vs~~~~---p~~~~---- 371 (452)
T PTZ00094 317 AALEKR-GYD-LVTGG-TD------------NHLVLVDLRPFGITGSKMEKLLDAV---NISVNKNTI---PGDKS---- 371 (452)
T ss_pred HHHHhC-CcE-EecCC-CC------------CceEeecCCcCCCCHHHHHHHHHHC---CcEEecccC---CCCCc----
Confidence 888653 332 22221 00 011334444432 334455555433 333321111 00000
Q ss_pred CCCChhhHhhcCCCCCeEEEEecCCCh----HHHHHHHHHHHHHhh
Q psy12791 350 KSIPKETRDALGITDNLVRLSVGVEGY----TDLIADLDQALRKAC 391 (393)
Q Consensus 350 ~~~~~~~~~~~g~~~~~iRls~~~~~~----~~~i~~l~~al~~~~ 391 (393)
...++.||+|++..++ +++++.+.++|.++.
T Consensus 372 -----------~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 372 -----------ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred -----------CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1125899999999887 999999999998764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=162.75 Aligned_cols=311 Identities=16% Similarity=0.114 Sum_probs=186.2
Q ss_pred CCCC-CCC--CCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC-Cc--EEEeccHHHHH-HHHHHh--
Q psy12791 23 QWRS-QCV--IPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA-KH--GLCYSSGLGAV-TAVTHL-- 93 (393)
Q Consensus 23 ~~~~-~~~--~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~-~~--~i~~~~G~~al-~~~~~~-- 93 (393)
.++| .++ ...++..+.+.+++.+.+.. +..+++....++++.+|+.+.. ++ .++++||++++ .++...
T Consensus 30 ~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~ 106 (375)
T PRK04260 30 KYLDFSSGIGVTNLGFHPQVQQALQKQAGL---IWHSPNLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK 106 (375)
T ss_pred EEEECCCCcccccCCCCHHHHHHHHHHHHh---cCcccCccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH
Confidence 4566 222 44555666666655544322 1122334456678888876533 33 45678888886 444322
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhc------ccCCc---EEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVA------PKIGL---EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~------~~~g~---~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
...+++|++.+..|++......... +.++. .+...+.+|++++++.+.+++++|++++++|++|.+.+
T Consensus 107 ~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~ 186 (375)
T PRK04260 107 ATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKD 186 (375)
T ss_pred hcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHH
Confidence 3456788988888876432211111 01111 12233455899999988778899999999999999876
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
++++.++|+++ |+++|+||+|..+... .+. ....|++ ||||.+ | +|+|+||++++ +++.+.+.....
T Consensus 187 ~l~~~~~l~~~~-~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l-~-~G~~ig~~~~~-~~~~~~~~~~~~ 260 (375)
T PRK04260 187 FVKALADYCQET-GILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGL-A-NGVPVGAMLAK-SSLGGAFGYGSH 260 (375)
T ss_pred HHHHHHHHHHHc-CCEEEEechhhCCCcccchhhhHhhCCCCCEE--Eecccc-c-CCcceEEEEEc-HHHHhhcCCCCC
Confidence 89999999999 9999999999753211 111 1235644 899999 4 57999999998 777776643212
Q ss_pred hcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHH----hhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFL----ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l----~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
......++..+..+...++.+. ..+++..++.+.+.+.+ ..++.+..+ .+.|.+++
T Consensus 261 ~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~ 322 (375)
T PRK04260 261 GSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV------------------RGLGYMIG 322 (375)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE------------------eccceEEE
Confidence 1222335666655555553321 23344444444444444 333222211 22367789
Q ss_pred EEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
+.+..+ ...+.+.+...++.+... ..+.+|++++...++++++.+.+.++
T Consensus 323 ~~~~~~---~~~~~~~l~~~Gi~v~~~---------------------------~~~~lR~~~~~~~t~~~i~~~l~~l~ 372 (375)
T PRK04260 323 IETTAD---LSQLVEAARDKGLIVLTA---------------------------GTNVIRLLPPLTLTKEEIEQGIAILS 372 (375)
T ss_pred EEecCc---HHHHHHHHHhCCCEEecC---------------------------CCCEEEEcCCCccCHHHHHHHHHHHH
Confidence 888322 344555554434333210 14789999988888888888888876
Q ss_pred Hh
Q psy12791 389 KA 390 (393)
Q Consensus 389 ~~ 390 (393)
++
T Consensus 373 ~~ 374 (375)
T PRK04260 373 EV 374 (375)
T ss_pred Hh
Confidence 54
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=161.47 Aligned_cols=278 Identities=14% Similarity=0.125 Sum_probs=171.3
Q ss_pred chHHHHHHHHHHHhCCC--cEEEecc--HHHHH-HHHHHhcC---CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSS--GLGAV-TAVTHLLS---AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~--G~~al-~~~~~~~~---~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...+++|+.++++++.+ +.+++++ |+.++ .++..++. +||+|++. .|.. .+...++..|++++.++.
T Consensus 44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g--~~~~---~~~~~a~~~g~~~~~~~~ 118 (355)
T cd00611 44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTG--AWSA---KAAKEAKRYGGVVVIVAA 118 (355)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECC--HHHH---HHHHHHHhcCCCcEEEec
Confidence 45778999999999973 4566644 45568 66677776 55555542 1211 233467888998888775
Q ss_pred C------C-HHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcc
Q psy12791 131 R------K-IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSL 203 (393)
Q Consensus 131 ~------d-~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~ 203 (393)
+ + ++..+..+.+++++|.+++..|.||...+ ++++.+ |+++++|.+++.+.....++ ..++.+.|.
T Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~-g~~~~VDa~qs~g~~~idv~-~~~~~~ss~ 191 (355)
T cd00611 119 KEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTG-GVPLVADMSSNILSRPIDVS-KFGVIYAGA 191 (355)
T ss_pred ccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccC-CCeEEEEccccccCCCCCHH-HhCEEEeec
Confidence 3 2 33333456678999999999999999853 455568 99999999999876533322 234677779
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHH-------HH-----hcCCCCCHHHHHHHHhccC------CHHHHHHHHHHH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFL-------QN-----SMGVVPSPFDCWLVTRGLK------TLPCRLKEHERG 265 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 265 (393)
+|++ ||+| +|+++.+ +++.+++... .. ....+++....+.+.++++ .++.+.++..+.
T Consensus 192 ~K~l-GP~G--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l 267 (355)
T cd00611 192 QKNL-GPAG--VTVVIVR-KDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK 267 (355)
T ss_pred cccc-CCCc--eEEEEEC-HHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999 7999 9999998 7766654321 00 0112222222222222222 355556666777
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
++.+.+.|+++|++. ..+. .+. ...+.++.|.+++ ......+++.+...++....+.
T Consensus 268 ~~~l~~~l~~~~gl~--~~~~---~~~--------~rs~~vvsf~~~~-~~l~~~~~~~~~r~G~~~~~~~--------- 324 (355)
T cd00611 268 AQLLYDTIDNSNGFY--RGPV---DKR--------ARSRMNVPFRLGK-EELEKEFLKEAEAAGMIGLKGH--------- 324 (355)
T ss_pred HHHHHHHHHhCcccc--ccCC---CHH--------HcCceEEEEEcCC-hhhhHHHHHHHHHCCCcccCCC---------
Confidence 888888888776531 0110 000 0113458888843 2122333332222222211110
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+ ..+.+|+|++.++++++|+.|.++|+++.
T Consensus 325 ---------------~-~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 325 ---------------R-SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred ---------------c-ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 0 14789999999999999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=144.88 Aligned_cols=154 Identities=25% Similarity=0.298 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHh--CCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCC-----
Q psy12791 61 RRNLERCIASLE--EAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----- 132 (393)
Q Consensus 61 ~~~lr~~la~~~--~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d----- 132 (393)
..++++.+++++ +.+..+++++|+.++ .++..+.+++++|++++++|++... ..++..|++++.++.++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence 468999999999 656777777777788 6677777789999999999987432 45678899999888751
Q ss_pred H--HHHHhhc-CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC----CCCCcCcEEEEcccc
Q psy12791 133 I--ENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK----SLPWGVDIVLYSLTK 205 (393)
Q Consensus 133 ~--~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~----~~~~~~di~~~S~sK 205 (393)
. +.+++.. .++++++++++++|++|...|.++|.++|+++ ++++++|++|..+.... ....++|+++.|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K 157 (170)
T cd01494 79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY-GILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHK 157 (170)
T ss_pred hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHc-CCEEEEecccccccccccccccccccCCEEEEEccc
Confidence 1 2443333 45789999999999999999999999999999 99999999999866543 333578999999999
Q ss_pred cccCCCCceEEEEEec
Q psy12791 206 YMNGHSDVVMGATVTN 221 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~ 221 (393)
+++ .+| +|+++++
T Consensus 158 ~~~-~~~--~G~l~~~ 170 (170)
T cd01494 158 NLG-GEG--GGVVIVK 170 (170)
T ss_pred ccC-CCc--eEEEEeC
Confidence 995 454 9999864
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=152.15 Aligned_cols=279 Identities=14% Similarity=0.064 Sum_probs=182.6
Q ss_pred chHHHHHHHHHHHhCCC--c-EEEecc-HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC---
Q psy12791 59 PTRRNLERCIASLEEAK--H-GLCYSS-GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--- 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~-~i~~~~-G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--- 130 (393)
...+++++.++++++.+ + .+++++ |+.++ .++..++.+||++++......+. .+...++.+|+ +..+..
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~--r~~~~a~~~g~-~~~~~~~~~ 113 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSK--KAAKEAKKYGV-VNVVASGKE 113 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCC-cEEEecccc
Confidence 46788899999999963 3 444534 66678 77788888999987766555443 35778888898 555442
Q ss_pred ------CCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEccc
Q psy12791 131 ------RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204 (393)
Q Consensus 131 ------~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~s 204 (393)
.++++++ +++++++|.++|..+.||...+ ++++.+ +++++||.+++.+.....++ ..|+++.|.+
T Consensus 114 ~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~-~~l~iVDavss~g~~~id~~-~~d~~~~ssq 184 (349)
T TIGR01364 114 GNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVK-NAPLVADMSSNILSRPIDVS-KFGLIYAGAQ 184 (349)
T ss_pred CCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccC-CCeEEEEccccccCccCCHH-HccEEEEecc
Confidence 1445444 3457999999999999999887 677788 99999999999766533332 3569999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHH-------H--H---hcCCCCCHHHHHHHHhcc-----C-CHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFL-------Q--N---SMGVVPSPFDCWLVTRGL-----K-TLPCRLKEHERGS 266 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~--~---~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~ 266 (393)
|++ ||+| +|+++.+ +++++++... . . ....+++....+.+...+ + .++.+.+++.+..
T Consensus 185 K~l-gP~G--lg~l~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~ 260 (349)
T TIGR01364 185 KNI-GPAG--LTVVIVR-KDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKA 260 (349)
T ss_pred ccc-CCCc--eEEEEEC-HHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999 6999 9999998 7776655221 1 0 011122222222222222 2 3666677777788
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
+.+.++|+..+++.. +... +. ...+.++.|.+++ ......+++.+...+++...|..
T Consensus 261 ~~l~~~l~~~~gl~~---~~~~--~~--------~rs~~v~sf~~~~-~~~~~~~~~~~~~~Gi~~~~~~~--------- 317 (349)
T TIGR01364 261 QLLYDTIDNSNGFYR---NPVD--PR--------NRSRMNVVFTLGN-EELEKRFLKEAEERGLVSLKGHR--------- 317 (349)
T ss_pred HHHHHHHHhCCCeec---cCCC--HH--------HcCCeEEEEecCC-hhHhHHHHHHHHHCCCcccCCcc---------
Confidence 888888988765321 1100 00 0113568888853 22224454444433433222211
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+.+|+|++.++++++|+.|.++|+++.+
T Consensus 318 ----------------~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 318 ----------------SVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred ----------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 146899999999999999999999998754
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=154.34 Aligned_cols=279 Identities=14% Similarity=0.073 Sum_probs=179.4
Q ss_pred chHHHHHHHHHHHhCCC--c-EEEe-ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 59 PTRRNLERCIASLEEAK--H-GLCY-SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~-~i~~-~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
...+++++.++++++.+ . .+++ ++|+.++ .++..++.+||++++......+. .+.+.++++|.. ..+..+
T Consensus 48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~--r~~~~a~~~g~~-~~~~~~~~ 124 (360)
T PRK05355 48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSK--KAIKEAKKYGEV-NVAASSED 124 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCCc-eEEecccc
Confidence 56788999999999963 3 4444 3444458 77888999998887665544433 356778888865 333221
Q ss_pred ----CHHHHHh-hcCCCCcEEEEecCCCCccccc-CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccc
Q psy12791 132 ----KIENLIK-YIKPNTKMVWIENPTNPLMTVF-DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTK 205 (393)
Q Consensus 132 ----d~~~l~~-~l~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK 205 (393)
+..++++ .+++++++|.++|..+.||... |+++| + |+++++|.+++.+....+.+ ..|+++.|.+|
T Consensus 125 ~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~-g~l~vVDavss~g~~~idv~-~~d~~~~ssqK 196 (360)
T PRK05355 125 DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------G-DVPLVADMSSDILSRPIDVS-KFGLIYAGAQK 196 (360)
T ss_pred cCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------C-CCcEEEEcCccccCccCCHH-HccEEEEeccc
Confidence 2333434 6777899999999999999998 66666 7 99999999999776533332 34699999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHH-H---------H--hcCCCCCHHHHHHHHhcc-----C-CHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFL-Q---------N--SMGVVPSPFDCWLVTRGL-----K-TLPCRLKEHERGSI 267 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~-~---------~--~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~ 267 (393)
++ ||+| +|+++.+ +++++++... . . .+-.+++....+.+.+.+ + .++.+.+++.+.++
T Consensus 197 ~l-gP~G--lg~l~~s-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~ 272 (360)
T PRK05355 197 NI-GPAG--LTIVIVR-EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA 272 (360)
T ss_pred cc-cCCc--eEEEEEC-HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99 6999 9999998 6766655331 1 0 011222222222222222 2 35666777777888
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
.+.++|+.++.......+. ...+.++.|.+++ ......+++.+...++....|..
T Consensus 273 ~l~~~l~~~~~~~~~~~~~--------------~rs~~v~sf~~~~-~~~~~~~~~~~~~~Gi~~~~~~~---------- 327 (360)
T PRK05355 273 LLYDAIDSSDFYRNPVAPE--------------DRSRMNVPFTLAD-EELDKKFLAEAKAAGLVGLKGHR---------- 327 (360)
T ss_pred HHHHHHHhCCCcccCCChh--------------hcCCcEEEEEcCC-hHHHHHHHHHHHHCCCcccCCCC----------
Confidence 8888888766211110000 0123568888853 32334454443322222111100
Q ss_pred cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 348 THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+.+|+|++.+++.++|+.|.++|+++.+
T Consensus 328 ---------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 328 ---------------SVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred ---------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 147899999999999999999999998753
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=154.98 Aligned_cols=290 Identities=17% Similarity=0.058 Sum_probs=183.7
Q ss_pred chHHHHHHHHHHHhCCC---cEEEe--ccH-HHHH-HHHHHhc--------CCC-----CeEEEcCCCccchHHHHHHhc
Q psy12791 59 PTRRNLERCIASLEEAK---HGLCY--SSG-LGAV-TAVTHLL--------SAG-----DHIISGDDVYGGTYRYFAQVA 118 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~---~~i~~--~~G-~~al-~~~~~~~--------~~g-----d~vl~~~~~y~~~~~~~~~~~ 118 (393)
...+++++.+|+++|.+ +.+.+ ||| ++++ .++.+.. ..| .+|++++.+|.+ +.+.+
T Consensus 80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~s----v~ka~ 155 (431)
T TIGR01788 80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVC----WEKFA 155 (431)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHH----HHHHH
Confidence 34456778899999987 23332 455 5555 5543321 112 368999989985 56677
Q ss_pred ccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCC-----CcEEEEeCccCccc
Q psy12791 119 PKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP-----DILLVLDNTFLTAY 187 (393)
Q Consensus 119 ~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----~~~livDea~~~~~ 187 (393)
+..|++++.++.+ |+++|++.+++++.+|+++..||.||.+.|+++|.++|++++ ++++++|.+|+.+.
T Consensus 156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~ 235 (431)
T TIGR01788 156 RYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFI 235 (431)
T ss_pred HHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence 7789888888764 689999999989999999999999999999999999999972 69999999999643
Q ss_pred c-----cCCC---CCcCcEEEEcccccccCCCCceEEEEEecChH-HHHHHHHHHHhcCCC-------CC-----HHHHH
Q psy12791 188 Y-----QKSL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-LQARLKFLQNSMGVV-------PS-----PFDCW 246 (393)
Q Consensus 188 ~-----~~~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~~-------~~-----~~~~~ 246 (393)
. ..+. ..++|.+..|.||++.|+.| +|+++.++++ +.+.+.....+.+.. .+ ....|
T Consensus 236 ~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w 313 (431)
T TIGR01788 236 APFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQY 313 (431)
T ss_pred HHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHH
Confidence 2 1111 13678899999999867998 8999887553 223222111111110 00 11123
Q ss_pred HHHhcc--CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC---HHHHHHH
Q psy12791 247 LVTRGL--KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG---AEETRIF 321 (393)
Q Consensus 247 ~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 321 (393)
+.++.+ ..++...++..+.++.+.+.|++.+.++-+. +. ...+++.|.+++. ......+
T Consensus 314 ~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~-~~---------------~~~~iV~Fr~~~~~~~~~~~~~l 377 (431)
T TIGR01788 314 YNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS-DG---------------SGIPLVAFKLKDDADPGYTLYDL 377 (431)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-CC---------------CCceEEEEEeCCCCCCCcCHHHH
Confidence 332222 3456667777788888888898887765332 11 0147888888531 1234455
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.|...++.+..- ..|. .+ ...-++|+++....+.+.++.+.+.|.++
T Consensus 378 ~~~L~~~G~~~~~~------~~p~-----~~---------~~~~~lR~~~~~~~~~~~~~~~~~~~~~~ 426 (431)
T TIGR01788 378 SHRLRERGWIVPAY------TLPK-----NA---------EDIVVMRIVVREGFSRDLAELLIEDIEAA 426 (431)
T ss_pred HHHHHHCCCcccCC------CCCC-----cc---------CCeEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 55555433322110 0010 00 01357899997666666666666666554
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=166.45 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhCCCcEEEeccHHH-----HH-HHHHHhcCC-CC----eEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 61 RRNLERCIASLEEAKHGLCYSSGLG-----AV-TAVTHLLSA-GD----HIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~~i~~~~G~~-----al-~~~~~~~~~-gd----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
..++|+.|++++|.+ .+.++.++. ++ .++.++.++ || +|+++...|+++. ..+...|++++.++
T Consensus 570 ~~~~r~~la~i~g~~-~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~----a~a~~~G~~vv~v~ 644 (993)
T PLN02414 570 FEDLGDLLCEITGFD-SFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNP----ASAAMCGMKIVVVG 644 (993)
T ss_pred HHHHHHHHHHHhCCC-eEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCH----HHHHHCCCEEEEec
Confidence 468999999999994 454444433 44 666677765 88 8999999998743 33455799999999
Q ss_pred CC-----CHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc--cCCCCCcCcEE
Q psy12791 130 LR-----KIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY--QKSLPWGVDIV 199 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~--~~~~~~~~di~ 199 (393)
.+ |+++|++.+++ ++++|++++|+|-+|...|+++|.++|+++ |+++++|.++..... ..+.+.|+|++
T Consensus 645 ~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~-Galv~vDgAq~~a~~~l~~p~~~GaD~~ 723 (993)
T PLN02414 645 TDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDN-GGQVYMDGANMNAQVGLTSPGFIGADVC 723 (993)
T ss_pred cCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHc-CCEEEEEecCHHhccCcCCccccCCCEE
Confidence 85 89999999984 689999999999999999999999999999 999999999976542 24556899999
Q ss_pred EEccccccc-----CCCCceEEEEEecChHHHHHHH
Q psy12791 200 LYSLTKYMN-----GHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 200 ~~S~sK~~~-----G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
++|.||+|+ |.|| +|+++++ +.+...+.
T Consensus 724 ~~s~HK~f~~P~G~GGPg--~G~l~~~-~~L~p~lP 756 (993)
T PLN02414 724 HLNLHKTFCIPHGGGGPG--MGPIGVK-KHLAPFLP 756 (993)
T ss_pred EecCCccCCcCcccCCCC--eeeEEEc-hhhcccCC
Confidence 999999776 4555 8999887 66665543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-17 Score=144.05 Aligned_cols=304 Identities=21% Similarity=0.182 Sum_probs=199.0
Q ss_pred ccCCeeeeCCCCCC-CCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchH
Q psy12791 34 ILSTTFKQNTPGQP-PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY 111 (393)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~ 111 (393)
++.+...+++.+.. .....|+. ++...++++.+++.++....++++||+++. .++.+.++||+.|++..-.|-.++
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~--D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~ 88 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGE--DPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTD 88 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCC--CHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceec
Confidence 34455666555542 22344553 688999999999999998899999999997 888888999999999887775321
Q ss_pred HHHHHhc-ccCCcEEEeeCCC----CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEE
Q psy12791 112 RYFAQVA-PKIGLEVDFVDLR----KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILL 177 (393)
Q Consensus 112 ~~~~~~~-~~~g~~v~~~~~~----d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~l 177 (393)
+..... -..|.++..++-. +++++++.+.+ .+.++++.+.+|..|.++| +++|.++|+++ |+.|
T Consensus 89 -E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~-~l~L 166 (342)
T COG2008 89 -ECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEH-GLPL 166 (342)
T ss_pred -ccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHh-CCce
Confidence 100001 1112344444422 78999997753 2566777666668899999 55677789999 9999
Q ss_pred EEeCccCccc---ccCC---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH--HHHHH
Q psy12791 178 VLDNTFLTAY---YQKS---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD--CWLVT 249 (393)
Q Consensus 178 ivDea~~~~~---~~~~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 249 (393)
++|.+-.... +..+ +..++|++..++||..+ .| +|.++..+.+++++++.++...|...+... +....
T Consensus 167 HmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~-~~---~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~ 242 (342)
T COG2008 167 HMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGG-AP---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGL 242 (342)
T ss_pred eechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCc-ce---eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHH
Confidence 9999876421 1111 22478999999999984 54 777777779999999988887776554322 22223
Q ss_pred hccCCHHHHHHHHHHH--HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 250 RGLKTLPCRLKEHERG--SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
..+++-..+.....+| +++|.+.++..++++ +..|. ..+++.+.++....+..++...+..
T Consensus 243 ~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~-~~~~~----------------~tN~vf~~l~~~~i~~l~~~~~~~~ 305 (342)
T COG2008 243 YALEDDVWRLAADHANAMAARLAEGLEAKPGVK-LAFPV----------------ETNMVFVRLPESAIEALRLAGALFY 305 (342)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHhhhhcCCce-eccCC----------------cccEEEEECChHHHHHHHhhchhhe
Confidence 3344433344444455 788899998777765 22221 2478888884222222222222211
Q ss_pred cccccccCCccccccCcccccCCCCChhhHhhcCCCC-CeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITD-NLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 328 ~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~-~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.++.. ... ..+|+-.++.++++.++.+...++++.
T Consensus 306 ~~~~~-----------------------------~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 306 RGVLI-----------------------------GAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred eeeec-----------------------------cCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 11110 012 379999999999999999999888753
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=151.85 Aligned_cols=287 Identities=11% Similarity=0.049 Sum_probs=181.4
Q ss_pred HHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCC-------------------------------CCeEEEcCCCccch
Q psy12791 64 LERCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSA-------------------------------GDHIISGDDVYGGT 110 (393)
Q Consensus 64 lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~-------------------------------gd~vl~~~~~y~~~ 110 (393)
+.+...+++|++ ..+-.-||+.|. .+..++++| ||+|+..++.+++.
T Consensus 100 ~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGH 179 (493)
T PRK13580 100 AAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGH 179 (493)
T ss_pred HHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCe
Confidence 344555678888 477789999996 777888876 79999887766542
Q ss_pred HHH-HHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCcc
Q psy12791 111 YRY-FAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 111 ~~~-~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~ 183 (393)
... +..-+.....+++.++++ |.+++++.+.++++.|++++.+|- |...|+++|.++|+++ |+++++|++|
T Consensus 180 lthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~-gA~L~VD~AH 257 (493)
T PRK13580 180 LTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEV-GAVLMVDMAH 257 (493)
T ss_pred eecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHc-CCEEEEECch
Confidence 100 000001111334444332 789999999988999999988888 4588999999999999 9999999999
Q ss_pred CcccccCCC-------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-hcCCCCCHHHHHHHHhcc---
Q psy12791 184 LTAYYQKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-SMGVVPSPFDCWLVTRGL--- 252 (393)
Q Consensus 184 ~~~~~~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 252 (393)
+.++..... ..++|++++|+||++.|+ ++|+++++ +++.+.+..... .+++...+..+..+....
T Consensus 258 ~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP---~GG~I~~~-~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~ 333 (493)
T PRK13580 258 FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP---RGGLVLAK-KEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR 333 (493)
T ss_pred hhceeccccchhhcCCCCCCcEEEeCChhhccCC---CeEEEEec-HHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh
Confidence 987653111 136899999999998655 47999987 788887753332 234444444333222211
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH-HHHHHhcCcccc
Q psy12791 253 -KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET-RIFLESLLIFRC 330 (393)
Q Consensus 253 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 330 (393)
.....++++..+|++.+++.|.+... . +...+ .-..++.+.+ ++.... ..+.+.|...++
T Consensus 334 ~~ef~~y~~~l~~Na~~La~~L~~~G~-~-vv~gg---------------TdshIV~V~l-g~~~~~g~~a~~~L~e~GI 395 (493)
T PRK13580 334 TPEFQKYAQQVVDNARALAEGFLKRGA-R-LVTGG---------------TDNHLVLIDV-TSFGLTGRQAESALLDAGI 395 (493)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhcCC-C-ccCCC---------------CCCCEEEEEe-CCHHHHHHHHHHHHHHCCe
Confidence 12345778888999999998876432 1 10000 1147889998 444322 234445544443
Q ss_pred ccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC----hHHHHHHHHHHHHHhh
Q psy12791 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG----YTDLIADLDQALRKAC 391 (393)
Q Consensus 331 ~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~----~~~~i~~l~~al~~~~ 391 (393)
-+.. ...|..... . .....|||++...+ ++++++.+.++|.++.
T Consensus 396 ~vn~------i~~Ptvp~g-~----------~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l 443 (493)
T PRK13580 396 VTNR------NSIPSDPNG-A----------WYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVL 443 (493)
T ss_pred EEcc------ccCCCCCCC-C----------CCCceEEeccchhhhcCCCHHHHHHHHHHHHHHH
Confidence 3321 111211000 0 11578999998744 4777888888776543
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=150.65 Aligned_cols=215 Identities=14% Similarity=0.160 Sum_probs=146.9
Q ss_pred chHHHHHHHHHHHhCCC-cE--EEeccH-HHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HG--LCYSSG-LGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~--i~~~~G-~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...+++++.+|+++|.+ +. -++|+| +++. .++... ..++++|++++.+|.+ ..+.++..|++...++.+
T Consensus 65 ~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~S----v~ka~~~lg~~~~~V~~~ 140 (380)
T PRK02769 65 DFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYS----VSKIARLLRIKSRVITSL 140 (380)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceeh----HHHHHHHcCCCCceeccC
Confidence 34457788889999986 33 245555 5554 444322 3578899999999986 345566667766666653
Q ss_pred -----CHHHHHhhcCCC---CcEEEEecCCCCcccccCHHHHHHHHHhCCC---cEEEEeCccCccccc---C--CCC--
Q psy12791 132 -----KIENLIKYIKPN---TKMVWIENPTNPLMTVFDVKAISAVVKQHPD---ILLVLDNTFLTAYYQ---K--SLP-- 193 (393)
Q Consensus 132 -----d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~---~~livDea~~~~~~~---~--~~~-- 193 (393)
|++++++.+.++ |.+|++++++|+||.+.|+++|.++|+++ | +++++|.+|+.+... . +++
T Consensus 141 ~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~-g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~ 219 (380)
T PRK02769 141 PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKI-GIDDYYIHADAALSGMILPFVNNPPPFSFA 219 (380)
T ss_pred CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh-CCCceEEEEEecccceeecccCccccCCcc
Confidence 889999988765 89999999999999999999999999999 7 799999999986542 1 222
Q ss_pred CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-------cCCCC---CHHHHHHHHhcc--CCHHHHHHH
Q psy12791 194 WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-------MGVVP---SPFDCWLVTRGL--KTLPCRLKE 261 (393)
Q Consensus 194 ~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~--~~~~~~~~~ 261 (393)
.++|.+..|.||++++|.| .|.++.+ ++..+.+.....+ ..++. .....+.+++.+ +.+.+..++
T Consensus 220 ~~vDsis~s~HK~~~~P~g--~G~l~~r-~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~ 296 (380)
T PRK02769 220 DGIDSIAISGHKFIGSPMP--CGIVLAK-KKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQH 296 (380)
T ss_pred CCCCEEEECCcccCCCCCC--cEEEEEe-hhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 3789999999999966888 8999988 4554444211111 11111 122333333333 235556666
Q ss_pred HHHHHHHHHHHHhhCCCcceE
Q psy12791 262 HERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~v 282 (393)
..+.++++.+.|+.. ++..+
T Consensus 297 ~~~la~~l~~~L~~~-g~~~~ 316 (380)
T PRK02769 297 CLDMAQYAVDRLQAN-GIPAW 316 (380)
T ss_pred HHHHHHHHHHHHHhC-CCEEE
Confidence 777778888888653 44433
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-17 Score=154.50 Aligned_cols=285 Identities=16% Similarity=0.156 Sum_probs=182.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh---------cCC-CCeEEEcCCCccch-HHHHHHhcc-----
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL---------LSA-GDHIISGDDVYGGT-YRYFAQVAP----- 119 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~---------~~~-gd~vl~~~~~y~~~-~~~~~~~~~----- 119 (393)
..+...+|++.|+++++.+..++++||++|+ .++... ..+ .+.|+.....|++. ..... ...
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~-~~~~~~~~ 155 (401)
T TIGR01885 77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAIS-MSTDPDSR 155 (401)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHh-CcCCcccc
Confidence 4567889999999999887899999999996 555432 123 35677777777753 22221 111
Q ss_pred -cCC---cEEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 120 -KIG---LEVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 120 -~~g---~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
.++ ..+..++..|++++++.+. +++.+|+++.+++++|.+.| +++|.++|+++ |+++|+||+|..+..
T Consensus 156 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~ 234 (401)
T TIGR01885 156 TNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGR 234 (401)
T ss_pred cccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCc
Confidence 122 2356667778888888774 45778999999999999998 89999999999 999999999864211
Q ss_pred -cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHH
Q psy12791 189 -QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLK 260 (393)
Q Consensus 189 -~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 260 (393)
... .....|+++ ++|.++ ..++++|+++++ +++++.++...........+..+..+...++.+.. ..+
T Consensus 235 ~G~~~~~~~~~~~~di~~--~gK~l~-~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~ 310 (401)
T TIGR01885 235 TGKLLCVDHENVKPDIVL--LGKALS-GGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAE 310 (401)
T ss_pred cchhhHHhhcCCCCCEEE--eecccc-CCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 111 123457664 679994 556899999997 78887665311111112345555555555544332 233
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH--HHHHHHHHhcCccccccccCCcc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA--EETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
+..+....+.+.|++++. ..+ ...++.|.+..+.+..+. .....+.+.+...++.+.+.
T Consensus 311 ~~~~~~~~~~~~L~~l~~-~~~---------------~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~--- 371 (401)
T TIGR01885 311 NAEKLGEIFRDQLKKLPK-PII---------------TEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPT--- 371 (401)
T ss_pred HHHHHHHHHHHHHHhccC-Cce---------------eEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEec---
Confidence 444455566666665421 000 011234667777774221 24566666665444433210
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++.+||++++..++++++.+.++|++.
T Consensus 372 ------------------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~ 399 (401)
T TIGR01885 372 ------------------------HGNIIRLAPPLVITEEQLDEGLEIIKKV 399 (401)
T ss_pred ------------------------CCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 1478999999999999999998888765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=142.27 Aligned_cols=300 Identities=17% Similarity=0.208 Sum_probs=201.5
Q ss_pred eeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHH-HHHHHHhc-CCCCeEEEcCCCccchHHHHHH
Q psy12791 39 FKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLL-SAGDHIISGDDVYGGTYRYFAQ 116 (393)
Q Consensus 39 ~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~ 116 (393)
.++++.++..+-.-|+. +|...+|++..|+++|.+..++++||+.. +.+++..+ ++|.+|++.+.+|--.+ +-..
T Consensus 38 Mr~am~eA~vgDdVyGe--D~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~-E~gg 114 (384)
T KOG1368|consen 38 MRRAMAEASVGDDVYGE--DPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRY-EQGG 114 (384)
T ss_pred HHHHHhhcccCcccccC--CccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEeccchheeeh-hccC
Confidence 44444444333334554 68889999999999999999999999998 46666554 58999999988775322 1223
Q ss_pred hcccCCcEEEeeCCC-----CHHHHHhhcCC--------CCcEEEEecCCCCcc-cccCHH---HHHHHHHhCCCcEEEE
Q psy12791 117 VAPKIGLEVDFVDLR-----KIENLIKYIKP--------NTKMVWIENPTNPLM-TVFDVK---AISAVVKQHPDILLVL 179 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~-----d~~~l~~~l~~--------~~~~v~l~~p~nptG-~~~~~~---~l~~l~~~~~~~~liv 179 (393)
+....|+.+..+... +++++++++.. -|++|.++|-+|.+| .++|++ ++.+||+++ |+.+.+
T Consensus 115 ~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~-glkLH~ 193 (384)
T KOG1368|consen 115 ISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRH-GLKLHM 193 (384)
T ss_pred hhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhcc-CCeeec
Confidence 345567777776543 79999999862 379999998888777 888955 567789999 999999
Q ss_pred eCccCcccc---cCCCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC--HHHHHHHHhc
Q psy12791 180 DNTFLTAYY---QKSLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS--PFDCWLVTRG 251 (393)
Q Consensus 180 Dea~~~~~~---~~~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 251 (393)
|.+-..-.. ..|.. ...|-+.-.+||.++ .| +|-++..+++++++.+..+...|+.+- ..-+++++-+
T Consensus 194 DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglg-AP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLva 269 (384)
T KOG1368|consen 194 DGARIFNAAVASGVPVKKICSAFDSVSICLSKGLG-AP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVA 269 (384)
T ss_pred chhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCC-CC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 998764211 11221 235667677899995 44 777666669999999888877776653 3334444444
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccc
Q psy12791 252 LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCA 331 (393)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (393)
++..-...+.-.+.+..++++++..+.+. +..|..+ .+++.+.+....-.++.+.+.++..++.
T Consensus 270 l~~~~~~L~~dHk~A~~lAe~~~~~~~i~-v~v~a~e---------------tNiv~~~l~q~~~~~~~l~~~~~k~gi~ 333 (384)
T KOG1368|consen 270 LDENVPLLRADHKRAKELAEYINTPEEIR-VEVPAVE---------------TNIVNMVLCQARLTAEELCKFLEKNGIL 333 (384)
T ss_pred hhcchHHHHHHHHHHHHHHHHhcccccee-eecchhh---------------cceeeeecccccCCHHHHHHHHHHCCeE
Confidence 44322255555677788899998665543 3434211 3566665533334455555555544333
Q ss_pred cccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 332 ESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 332 ~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.-.| ....+|+.++..-+++.++.+.+++++
T Consensus 334 lm~~---------------------------~s~r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 334 LMGG---------------------------ASRRIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred Eeec---------------------------cccceEEEEEEecCHHHHHHHHHHHHH
Confidence 2211 135699999999999999999999853
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=151.68 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=164.6
Q ss_pred eccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cE---EEeccHHHHH-HH
Q psy12791 15 VHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HG---LCYSSGLGAV-TA 89 (393)
Q Consensus 15 ~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~---i~~~~G~~al-~~ 89 (393)
.+.|++.....|.+....+.+ +.......+...+.|++.....-+++++.+|+++|.+ +. +++++|+++. .+
T Consensus 25 ~~~gy~~~~~~~~~~~~~~~~---~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~a 101 (374)
T PLN03032 25 VHFGYPYNLDFDYGELSQLMK---YSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHG 101 (374)
T ss_pred hccCCCchhccChHHHHHHHH---hcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHH
Confidence 466777765555222222221 1111112222234444444455677889999999986 33 5555556665 54
Q ss_pred HHHhc--CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC---CCcEEEEecCCCCcccc
Q psy12791 90 VTHLL--SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP---NTKMVWIENPTNPLMTV 159 (393)
Q Consensus 90 ~~~~~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~---~~~~v~l~~p~nptG~~ 159 (393)
+.... .++.+|+++.-+|.+ ..+.++..|.+++.+|.+ |+++|++++.+ ++.+|+++..+|+||.+
T Consensus 102 l~~ar~~~~~~~vi~s~~~H~S----v~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~i 177 (374)
T PLN03032 102 ILVGREVFPDGILYASRESHYS----VFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAV 177 (374)
T ss_pred HHHHHHhCCCcEEEeCCCceeH----HHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccC
Confidence 44322 345689999999986 446677777777777765 89999999876 46788889999999999
Q ss_pred cCHHHHHHHHHhCCC-----cEEEEeCccCcccccC-------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 160 FDVKAISAVVKQHPD-----ILLVLDNTFLTAYYQK-------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~-----~~livDea~~~~~~~~-------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
.|+++|.++|+++ | +++++|.+++.+.... ....++|.++.|.||+++.|.| +|.++.+ ....+
T Consensus 178 dpi~eI~~i~~~~-g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g--~G~ll~r-~~~~~ 253 (374)
T PLN03032 178 DDLDRILRILKEL-GYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP--CGVALTR-KKHVK 253 (374)
T ss_pred CCHHHHHHHHHHh-CCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcC--eEEEEEE-chhhH
Confidence 9999999999998 6 5899999998754321 1123689999999999933887 8999998 44445
Q ss_pred HHHHHHHh--------cCCCC--CHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 228 RLKFLQNS--------MGVVP--SPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 228 ~~~~~~~~--------~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+.....+ .|+-. .....|+.++ +.+.+.++.++..+.++++.+.|++.
T Consensus 254 ~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~ 314 (374)
T PLN03032 254 ALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA 314 (374)
T ss_pred hhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44321111 11111 1233344333 33556777888888999999999864
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=154.96 Aligned_cols=286 Identities=15% Similarity=0.131 Sum_probs=178.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH--hc---C----CCC-eEEEcCCCccchHHHHHHhcc-----
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH--LL---S----AGD-HIISGDDVYGGTYRYFAQVAP----- 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~--~~---~----~gd-~vl~~~~~y~~~~~~~~~~~~----- 119 (393)
+.++...+|.+.|+++.+.+..++.+||++|+ .++.. .. . +++ .|+.....|++.......+..
T Consensus 114 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~ 193 (474)
T PLN02624 114 FYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEAT 193 (474)
T ss_pred cCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcccc
Confidence 45677889999999998877889999999986 55421 11 1 133 567777777664221111100
Q ss_pred -cCC---cEEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 120 -KIG---LEVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 120 -~~g---~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
.++ ..+..++..|++.+++.++ +++++|+++.++|++|.++| +++|.++|++| |+++|+||+|..+..
T Consensus 194 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~Gr 272 (474)
T PLN02624 194 RGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLAR 272 (474)
T ss_pred ccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCc
Confidence 000 1245566678888888775 35789999999999999998 99999999999 999999999984211
Q ss_pred -cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHH
Q psy12791 189 -QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLK 260 (393)
Q Consensus 189 -~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 260 (393)
... .....|+++ ++|.+ |..++++|+++.+ +++.+.+...........++..+..+...++.+.. ..+
T Consensus 273 tG~~~a~~~~~i~pDiv~--lsK~l-ggG~~pigav~~~-~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~ 348 (474)
T PLN02624 273 TGKMLACDWEEVRPDVVI--LGKAL-GGGVIPVSAVLAD-KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAE 348 (474)
T ss_pred CcchhhHHhcCCCCCEEE--ecccc-cCCCCcceeeeec-HHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHH
Confidence 111 112356665 67999 5666899999987 67766554322211223456666666555544321 222
Q ss_pred HHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC---HHHHHHHHHhcCccccccc
Q psy12791 261 EHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG---AEETRIFLESLLIFRCAES 333 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 333 (393)
+..+....+.+.|+. ++.. + ...++.|.++.|.+..+ ......+.+.+...++.+.
T Consensus 349 ~~~~~~~~l~~~L~~l~~~~~~~--i---------------~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~ 411 (474)
T PLN02624 349 RSAKLGQELRDQLQKIQKQFPKL--I---------------KEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAK 411 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc--e---------------EEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEe
Confidence 333333444444433 2211 0 01123466777777321 3445566666654444332
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++ .++.|||++++..++++++.+.+.|+++
T Consensus 412 p~---------------------------~~~~lR~~p~l~~t~e~id~~l~~L~~~ 441 (474)
T PLN02624 412 PT---------------------------HDTIIRLAPPLSISEDELQECSKALSDV 441 (474)
T ss_pred cC---------------------------CCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 11 1478999999899988888888887654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=156.46 Aligned_cols=211 Identities=17% Similarity=0.131 Sum_probs=136.2
Q ss_pred cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccch
Q psy12791 35 LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGT 110 (393)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~ 110 (393)
.++.+.+++.+++.....|. ++.+...+|+++|++++... ..+++++|++|+ .++.. ....+++|+...++|++.
T Consensus 65 ~~p~v~~ai~~q~~~~~~~~-~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~ 143 (423)
T TIGR00713 65 AHPRVVEAVKEALERGTSYG-APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGH 143 (423)
T ss_pred CCHHHHHHHHHHHHhCCcCC-CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCC
Confidence 33445555444433333332 35677889999999987654 566677778887 54432 233568999999999874
Q ss_pred HHHHHHh----------------cccCCcEEEeeCCCCHHHHHhhcC---CCCcEEEEe-cCCCCcccccC----HHHHH
Q psy12791 111 YRYFAQV----------------APKIGLEVDFVDLRKIENLIKYIK---PNTKMVWIE-NPTNPLMTVFD----VKAIS 166 (393)
Q Consensus 111 ~~~~~~~----------------~~~~g~~v~~~~~~d~~~l~~~l~---~~~~~v~l~-~p~nptG~~~~----~~~l~ 166 (393)
....... ....+..+..++..|++++++.+. +++++|+++ .++| +|.+.+ +++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~ 222 (423)
T TIGR00713 144 HDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLR 222 (423)
T ss_pred hhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHH
Confidence 3222110 001112245556668899988886 567888886 7777 798887 78999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH---HhcCC
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ---NSMGV 238 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~---~~~~~ 238 (393)
++|+++ |+++|+||+|..+..... .....|++ +|+|.+ | +|+|+||++++ +++.+.+.... .....
T Consensus 223 ~l~~~~-~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l-~-~G~pig~v~~~-~~i~~~~~~~~~~~~~~T~ 296 (423)
T TIGR00713 223 ALTEEY-GSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKII-G-GGLPVGAFGGR-REIMERLAPEGPVYQAGTL 296 (423)
T ss_pred HHHHHh-CCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhh-c-CCCceeeeeEH-HHHHHhhCcCCCeeeccCC
Confidence 999999 999999999976532111 12234654 799999 5 78999999998 88888775211 11122
Q ss_pred CCCHHHHHHHHhccC
Q psy12791 239 VPSPFDCWLVTRGLK 253 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (393)
..++..+..+...++
T Consensus 297 ~~~~~~~aaa~a~l~ 311 (423)
T TIGR00713 297 SGNPLAMAAGLATLK 311 (423)
T ss_pred CCCHHHHHHHHHHHH
Confidence 345666665554443
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=148.36 Aligned_cols=286 Identities=12% Similarity=0.110 Sum_probs=170.8
Q ss_pred chHHHHHHHHHHHhCCC--cEEEe--ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCH
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCY--SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKI 133 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~--~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~ 133 (393)
...++.|+.++++++.+ ..+++ +||+.++ .++..++.+ +.+++..-.|+..+....+.....+ ++..++.+..
T Consensus 41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 118 (361)
T TIGR01366 41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG 118 (361)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence 45778899999999984 35555 3356678 666666643 4455556667654332322222233 5666654433
Q ss_pred HHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCc
Q psy12791 134 ENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDV 213 (393)
Q Consensus 134 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~ 213 (393)
+.++..+.+++++|.++|..|.||.+.|+++| ++++ |+++++|.+++.+.....++ ..|+++.|.+|++++++|
T Consensus 119 ~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~-g~~~iVDavqs~g~~~idv~-~~D~~~~s~~K~lg~~~G- 192 (361)
T TIGR01366 119 SAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSD-DALVVIDATSGAGGLPVDIA-ETDVYYFAPQKNFASDGG- 192 (361)
T ss_pred CCCCCccCCCCCEEEEcccCCccceecccccc---cccC-CCeEEEEcCccccCCCCCHH-HCCEEEEEchhhcCCCCc-
Confidence 33444556789999999999999999999887 5788 99999999999776544433 379999999999965556
Q ss_pred eEEEEEecChHHHHHHHHHHH-------h--------------cCCCCCHHHHHHHHhccC------CHHHHHHHHHHHH
Q psy12791 214 VMGATVTNDDSLQARLKFLQN-------S--------------MGVVPSPFDCWLVTRGLK------TLPCRLKEHERGS 266 (393)
Q Consensus 214 r~G~~~~~~~~~~~~~~~~~~-------~--------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 266 (393)
+++++.+ +++++++..... + +...++....+.+.+.++ .++.+.+++.+..
T Consensus 193 -l~~~~~s-~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~ 270 (361)
T TIGR01366 193 -LWLAIMS-PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSS 270 (361)
T ss_pred -eEEEEEC-HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6776776 776666542110 0 011111111111112221 2455567777778
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
+.+.+++.+.+.+..+ .+. .... ...-+.++| ..+ +.++....++ ..++.+..+.
T Consensus 271 ~~l~~~l~~~~~~~~~-~~~-~~~~---------s~~v~~v~~-~~g~~~~~v~~~L~---~~gI~i~~~~--------- 326 (361)
T TIGR01366 271 SRLYSWAQERPYATPF-VTD-PGKR---------SQVVGTIDF-VDDIDAATVAKILR---ANGIVDTEPY--------- 326 (361)
T ss_pred HHHHHHHHhCCCcccC-CCC-hhhc---------ccceEEEEC-CCccCHHHHHHHHH---HCCCeeccCc---------
Confidence 8888888877643211 111 0000 001123444 222 3333333333 2233332110
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.. .....+|+|++.++++++++++.++|+++.+
T Consensus 327 ----~~----------l~~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 327 ----RK----------LGRNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred ----cc----------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 00 1146899999999999999999999997653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-16 Score=134.67 Aligned_cols=297 Identities=17% Similarity=0.187 Sum_probs=176.3
Q ss_pred ccCCC-CchHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHHHhc---CCCC--eEEEc-CCCccchHHHHHH
Q psy12791 53 YSRSN-NPTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVTHLL---SAGD--HIISG-DDVYGGTYRYFAQ 116 (393)
Q Consensus 53 y~~~~-~~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~~~~---~~gd--~vl~~-~~~y~~~~~~~~~ 116 (393)
..+|. ..+...|-+++++++ |. ++.|.+|+|++. . .++..+. ..|+ +|+.| .|.|-+ |..
T Consensus 67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiG----Y~d 142 (417)
T COG3977 67 LCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIG----YAD 142 (417)
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcc----ccc
Confidence 34453 356777888888764 43 279999999986 4 4333332 2343 45544 566654 322
Q ss_pred hcccCCc------EEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeC
Q psy12791 117 VAPKIGL------EVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDN 181 (393)
Q Consensus 117 ~~~~~g~------~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDe 181 (393)
+.-.-.. ++..++.. |.+++. +.+++.+|+++-|.||||.++. +.+|.++|++| |+++++|.
T Consensus 143 ~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~-giPliIDn 219 (417)
T COG3977 143 AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH-GIPLIIDN 219 (417)
T ss_pred cccCccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc-CCcEEEec
Confidence 2111111 11111111 555543 3467899999999999999997 66777889999 99999999
Q ss_pred ccCcccccC------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-
Q psy12791 182 TFLTAYYQK------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 182 a~~~~~~~~------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (393)
+|+.++... ++=-.+-+.|.|+||. |+||.|+|.++++ +++++.+..+.......++.+..+++.+.++.
T Consensus 220 AYg~PFP~iifsd~~~~w~~NiilC~SLSK~--GLPG~R~GIiIan-e~viqaitnmn~iisLap~~~G~Aia~~mie~g 296 (417)
T COG3977 220 AYGVPFPGIIFSDATPLWNENIILCMSLSKL--GLPGSRCGIIIAN-EKVIQAITNMNGIISLAPGRMGPAIAAEMIESG 296 (417)
T ss_pred ccCCCCCceecccccccCCCCEEEEeehhhc--CCCCcceeEEEcc-HHHHHHHHhccceeeecCCCccHHHHHHHhhcc
Confidence 999865321 1112466999999997 7999999999998 89998887666544444444444444444432
Q ss_pred -HHH-----HHHHHHHHHHHHHHHHhh-CCCcceE-eCCCCCCCcchHHHhhhcCCCcce-EEEEEcCCHHHHHHHHHhc
Q psy12791 255 -LPC-----RLKEHERGSIEVAKFLES-HPCVKGV-LHPGLPSHPNHELAKSQWSGTSGM-LSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 255 -~~~-----~~~~~~~~~~~l~~~l~~-~~~~~~v-~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 325 (393)
+.+ .+--+.++.+...+.|++ +|...+. ..|. |.+ +|+=+++-+-..+.+.++|
T Consensus 297 dl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpE-----------------GAIFlWLWf~dLPItt~~LYq~L 359 (417)
T COG3977 297 DLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPE-----------------GAIFLWLWFKDLPITTEELYQRL 359 (417)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCC-----------------cceeehhhhccCCCCHHHHHHHH
Confidence 111 122223444444555543 2322211 1121 222 3433323335566778888
Q ss_pred CccccccccCCccccc-cCcccccCCCCChhhHhhcCCCCCeEEEEecCCC--hHHHHHHHHHHHHHhh
Q psy12791 326 LIFRCAESLGGIESLA-DLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG--YTDLIADLDQALRKAC 391 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~-~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~--~~~~i~~l~~al~~~~ 391 (393)
+..++.+.+|..|-.. ..++ ...+.|+|+|+..+. .+.-+..+.+.++++.
T Consensus 360 Ka~Gvl~VPG~~FFpGl~~ew---------------pH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 360 KARGVLMVPGHYFFPGLDKEW---------------PHTHQCMRMNYVPEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred HhCeEEEecccccCCCCCCCC---------------CCccceEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888765321 1111 123689999996654 3555566667666654
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-16 Score=146.45 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHHhCCC---cEEEeccHH-HHH-HHHHHhc--C-CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-
Q psy12791 60 TRRNLERCIASLEEAK---HGLCYSSGL-GAV-TAVTHLL--S-AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL- 130 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~---~~i~~~~G~-~al-~~~~~~~--~-~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~- 130 (393)
...++++.+++++|.+ .++++++|+ .++ .++.++- . +||.|+++..+|.+ ..+++...|++++.++.
T Consensus 106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S----~~kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKS----CIKAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHH----HHHHHHHcCCeEEEeeee
Confidence 3567888899999998 578888887 456 4444432 2 58999999998875 45667889999999984
Q ss_pred -C------CHHHHHhhcCC---CCcEEEEecCC-CCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc------CCCC
Q psy12791 131 -R------KIENLIKYIKP---NTKMVWIENPT-NPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ------KSLP 193 (393)
Q Consensus 131 -~------d~~~l~~~l~~---~~~~v~l~~p~-nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~------~~~~ 193 (393)
+ |++++++++++ ++.++++.+|+ +++|...|+++|.++|+++ |+++|+|++|+..... ....
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~-gI~lIvDaAyg~~~~~~~~~~~~g~~ 260 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANY-DIPHIVNNAYGLQSNKYMELINKAIK 260 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHc-CCEEEEECcCcCcChhhhhhhhcccc
Confidence 2 79999999976 45666666664 5566788999999999999 9999999999964321 1122
Q ss_pred Cc-CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH-HHHHH--hccCCHHHHHHHHHHHHHHH
Q psy12791 194 WG-VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD-CWLVT--RGLKTLPCRLKEHERGSIEV 269 (393)
Q Consensus 194 ~~-~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~l 269 (393)
.| .|+++.|+||++. .+|. +|.++++++++.+.++....... ..++.. .++.+ .+.+.+.+.+++..++++.+
T Consensus 261 ~Grad~vv~s~hK~l~-~pg~-Gg~I~~~d~el~~~i~~~y~g~~-~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l 337 (444)
T TIGR03531 261 VGRVDAVVSSTDKNFM-VPVG-GAIIYSFDENFIQEISKSYPGRA-SASPSLDVLITLLSLGSKGYLELLKERKEMYKYL 337 (444)
T ss_pred ccCCCeEEEeCccCCC-CCCC-EEEEEECCHHHHHHHHHhccCCC-CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 33 5999999999995 5553 56666777888887765432211 222222 22222 23355666777777777888
Q ss_pred HHHHhhC
Q psy12791 270 AKFLESH 276 (393)
Q Consensus 270 ~~~l~~~ 276 (393)
.+.|+.+
T Consensus 338 ~~~L~~l 344 (444)
T TIGR03531 338 KELLQKL 344 (444)
T ss_pred HHHHHHH
Confidence 8877754
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-16 Score=139.96 Aligned_cols=307 Identities=16% Similarity=0.130 Sum_probs=190.8
Q ss_pred cCCeeeeCCCCCCCCCccccC-CCCchHHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHH--Hh-cC-C-CCeEEEcCCC
Q psy12791 35 LSTTFKQNTPGQPPQGFEYSR-SNNPTRRNLERCIASLEE-AKHGLCYSSGLGAV-TAVT--HL-LS-A-GDHIISGDDV 106 (393)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~--~~-~~-~-gd~vl~~~~~ 106 (393)
..|.+.+++.++......-++ |.++...+|.+.|++..+ .+..++.+||++|+ .++- .. .. + ..+|+.....
T Consensus 59 ~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~ns 138 (404)
T COG4992 59 CHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENS 138 (404)
T ss_pred CCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCC
Confidence 344555555444333333332 356888999999999986 66778888999988 4442 12 22 2 3467877777
Q ss_pred ccchH---------HHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCC
Q psy12791 107 YGGTY---------RYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHP 173 (393)
Q Consensus 107 y~~~~---------~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~ 173 (393)
|++-. ..|...+.-.=-.++++|.+|+++++++++++|.+|+++..+...|++.+ ++++.++|++|
T Consensus 139 FHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~- 217 (404)
T COG4992 139 FHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEH- 217 (404)
T ss_pred cCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHh-
Confidence 76521 11222222111246778888999999999999999999999999999997 88999999999
Q ss_pred CcEEEEeCccCccc------ccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 174 DILLVLDNTFLTAY------YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 174 ~~~livDea~~~~~------~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
|+++|.||+|...- .........||++ +.|.++ .|+.+|.++++ +.+.+.+..-.....-..+|+.++.
T Consensus 218 g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~Lg--GG~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv 292 (404)
T COG4992 218 GALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALG--GGFPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAV 292 (404)
T ss_pred CeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eecccc--CCccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHH
Confidence 99999999998621 1111223467774 779995 35789999997 6655554322222222346777776
Q ss_pred HHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 248 VTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 248 ~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
+...++.+. ...++..+....+.+.|+++.. .+| ..++.+|.|.|+-+.+.. ......+++.+
T Consensus 293 ~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~----~~~----------~v~~vRG~GLmiGiel~~-~~~a~~~~~~~ 357 (404)
T COG4992 293 ALAVLEVLLEEGLLENVREKGEYLLQRLRELKR----RYP----------LVKEVRGRGLMIGIELKE-PYRARDIVRAL 357 (404)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhh----cCC----------ceeeeecceeEEEEEecC-cccHHHHHHHH
Confidence 665554332 2334444444445555544211 111 123346778889999943 22456666666
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
...++.+.. ..++.|||.+.+.-++++++...+++++
T Consensus 358 ~~~gvL~~~---------------------------a~~~ViR~~PpL~i~~eei~~~~~~l~~ 394 (404)
T COG4992 358 REEGVLVLP---------------------------AGPNVIRFLPPLVITEEEIDEALDALER 394 (404)
T ss_pred HHCCeEEec---------------------------CCCCeEEecCCccCCHHHHHHHHHHHHH
Confidence 554432211 1256888887777666666555555543
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-15 Score=142.63 Aligned_cols=281 Identities=15% Similarity=0.144 Sum_probs=169.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH---hcC------C------CCeEEEcCCCccchHHHHHHhccc
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH---LLS------A------GDHIISGDDVYGGTYRYFAQVAPK 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~---~~~------~------gd~vl~~~~~y~~~~~~~~~~~~~ 120 (393)
.++...+|.+.|++..+.+...+.+||++|+ .++.. ... + ..+|+.-..+|++...........
T Consensus 55 ~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~ 134 (382)
T PLN00144 55 HTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSK 134 (382)
T ss_pred cCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCC
Confidence 3566778888888876555678889999986 44432 111 0 246888888887643221111110
Q ss_pred ------CC---cEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc
Q psy12791 121 ------IG---LEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA 186 (393)
Q Consensus 121 ------~g---~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~ 186 (393)
++ ..+..++..|++.+++.+.. ++++|+++..+||.|...+ +++|.++|++| |+++|+||+|..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~ 213 (382)
T PLN00144 135 EQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGL 213 (382)
T ss_pred ccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCC
Confidence 00 12466677789999988853 5788999877999555543 88999999999 9999999999864
Q ss_pred ccc-CC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HH
Q psy12791 187 YYQ-KS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CR 258 (393)
Q Consensus 187 ~~~-~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 258 (393)
... .+ .....| +.|++|.++ +|+|+|+++++ +++.+.+...........++..+..+...++.+. ..
T Consensus 214 gr~g~~~~~~~~~~~PD--i~t~sK~l~--~G~pig~v~~~-~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~ 288 (382)
T PLN00144 214 GRTGYLWAHEAYGVEPD--IMTLAKPLA--GGLPIGAVLVT-EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF 288 (382)
T ss_pred CccchHhhhhhcCCCCC--EEEeccccc--CCcceEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH
Confidence 221 11 123456 567899994 57999999997 7888776432222233456666666654433221 11
Q ss_pred HHHHHHHHHHH----HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 259 LKEHERGSIEV----AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 259 ~~~~~~~~~~l----~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
.+...+..+.+ .+.+..+|.+..+ ++.|.++|+++. . ....+.+.+...++.+..
T Consensus 289 ~~~~~~~g~~l~~~l~~~~~~~~~~~~v------------------rg~G~~~~l~l~-~--~~~~~~~~~~~~Gv~i~~ 347 (382)
T PLN00144 289 LASVAKKGEYLRELLRRKLGGNPHVKEV------------------RGVGLLVGIQLD-V--PAGPLVDACRDSGLLVLT 347 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceee------------------ecCceEEEEEec-C--ccHHHHHHHHHCCeEEee
Confidence 22222222233 3333333322222 335778999983 1 223455554444443322
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+ + ..+.||++++...++++++...+.|.++
T Consensus 348 ~-------------------------~-~~~~lrl~p~~~~~~~~i~~~~~~l~~~ 377 (382)
T PLN00144 348 A-------------------------G-KGDVVRLVPPLVISEAELEQAVEILADC 377 (382)
T ss_pred c-------------------------C-CCCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 1 0 1478999999966677777776666654
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-15 Score=142.66 Aligned_cols=286 Identities=16% Similarity=0.116 Sum_probs=165.7
Q ss_pred CchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcc-----cCC----
Q psy12791 58 NPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAP-----KIG---- 122 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~~g---- 122 (393)
++...+|.+.+++..+. +..++++||++|+ .++. .....+..|+..+++|++........-. ..|
T Consensus 83 ~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 162 (425)
T PRK08088 83 YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (425)
T ss_pred CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence 45566778888877654 3678899999975 3332 1222334566669998876533322211 001
Q ss_pred ---cEEEeeCCC--------CHHHHHhhcC-----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCc
Q psy12791 123 ---LEVDFVDLR--------KIENLIKYIK-----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNT 182 (393)
Q Consensus 123 ---~~v~~~~~~--------d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea 182 (393)
.....+|.+ +++++++.+. ++.++|+++..++..|.+.+ +++|.++|+++ ++++|+||+
T Consensus 163 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev 241 (425)
T PRK08088 163 PGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEH-GIMLIADEV 241 (425)
T ss_pred CCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecc
Confidence 111112221 1455777664 34678888766555566665 99999999999 999999999
Q ss_pred cCcccccC-CC---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--
Q psy12791 183 FLTAYYQK-SL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP-- 256 (393)
Q Consensus 183 ~~~~~~~~-~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 256 (393)
|..+.... .. ..+.+.-+.||||.+ | +|+|+||++++ +++.+.+...........++..+..+...++...
T Consensus 242 ~~g~g~~g~~~~~~~~~~~pdi~s~sK~l-~-~G~rig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~ 318 (425)
T PRK08088 242 QTGAGRTGTLFAMEQMGVAADLTTFAKSI-A-GGFPLAGVTGR-AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE 318 (425)
T ss_pred ccCCCcCcchhHHhhcCCCCCEEEEeccc-c-CCCcceeeEec-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 98632211 11 123344468999999 4 78999999997 8888877543333333456666665555543321
Q ss_pred HHHHHHHHHHHHHHHHH----hhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-------CHHHHHHHHHhc
Q psy12791 257 CRLKEHERGSIEVAKFL----ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-------GAEETRIFLESL 325 (393)
Q Consensus 257 ~~~~~~~~~~~~l~~~l----~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l 325 (393)
...++..+..+++.+.| ..+|.+..+ ++.|.++|+.+.. +......+...+
T Consensus 319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v------------------~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~ 380 (425)
T PRK08088 319 NLLQKANALGEKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHSKPNAKLTAQIVARA 380 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eccceEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 12222222223333333 333332222 2346789999831 233455666655
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...++.+..++ ...+.|||+++...++++++...+.|.++
T Consensus 381 ~~~Gv~~~~~~-------------------------~~~~~iRl~~~~~~t~~ei~~~i~~l~~~ 420 (425)
T PRK08088 381 RDKGLILLSCG-------------------------PYYNVLRILVPLTIEDAQIRQGLEIIAQC 420 (425)
T ss_pred HhCCCEEecCC-------------------------CCCCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 44343322110 11478999999887777777766666654
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-15 Score=140.35 Aligned_cols=289 Identities=17% Similarity=0.125 Sum_probs=172.1
Q ss_pred CCchHHHHHHHHHHHhCC-CcEEEeccHHHHH-HHHHH--hc----C--C-CCeEEEcCCCccchHHHHHHhcc----cC
Q psy12791 57 NNPTRRNLERCIASLEEA-KHGLCYSSGLGAV-TAVTH--LL----S--A-GDHIISGDDVYGGTYRYFAQVAP----KI 121 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~-~~~i~~~~G~~al-~~~~~--~~----~--~-gd~vl~~~~~y~~~~~~~~~~~~----~~ 121 (393)
.++...+|.+.|++.... +...+.+||++|+ .++.. .. . + .++|+.-..+|++.......... ..
T Consensus 80 ~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 80 YSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 355667788888877543 3577778889887 55422 11 1 1 23688888888775322211110 01
Q ss_pred C-----cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC-----HHHHHHHHHhCCCcEEEEeCccCccccc-C
Q psy12791 122 G-----LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD-----VKAISAVVKQHPDILLVLDNTFLTAYYQ-K 190 (393)
Q Consensus 122 g-----~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-----~~~l~~l~~~~~~~~livDea~~~~~~~-~ 190 (393)
+ ..+..++..|++.+++.+.++..+.++..|.+++|.+++ +++|.++|+++ |+++|+||+|..+... .
T Consensus 160 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~ 238 (408)
T PRK04612 160 GYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTGT 238 (408)
T ss_pred CCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCc
Confidence 1 124556667899999888655555555566666776654 88999999999 9999999999853211 1
Q ss_pred C---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHH
Q psy12791 191 S---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERG 265 (393)
Q Consensus 191 ~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 265 (393)
. ...+....+.+++|.+ | +|+++|+++++ +++.+.+...........++..+..+...++.+. ...++..+.
T Consensus 239 ~~a~~~~~~~pdi~t~~K~l-~-~G~piga~~~~-~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~ 315 (408)
T PRK04612 239 LFAHWQEQVTPDIVTLAKAL-G-GGFPIGAMLAG-PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQ 315 (408)
T ss_pred hhhhhhcCCCCCEEEEcchh-c-CCCceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 1124455667899999 4 68999999987 7777766432222222346777776666665443 233444444
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+.+.+.|+++.. .++ ...+.++.|.++.+.+.. ..+....+.+.+...++.+..
T Consensus 316 g~~l~~~l~~l~~----~~~----------~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~---------- 371 (408)
T PRK04612 316 SAALRAGLEALNA----EFG----------VFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQ---------- 371 (408)
T ss_pred HHHHHHHHHHHHh----hCC----------CeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEee----------
Confidence 4455555543210 000 011225567888888842 234455666655544433211
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+.||+.+.+.-++++++.+.+++++.
T Consensus 372 -----------------~g~~~lRl~Ppl~it~eeid~~l~~l~~~ 400 (408)
T PRK04612 372 -----------------AGPDVLRFVPALNLTDAELADGLARLRLA 400 (408)
T ss_pred -----------------CCCCEEEEcCCccCCHHHHHHHHHHHHHH
Confidence 01378999988887777777666666543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-15 Score=133.48 Aligned_cols=251 Identities=25% Similarity=0.330 Sum_probs=152.0
Q ss_pred CCchHHHHHHHHHHHhCCCcEEE---eccHHHHH-HHHHHhcCCCCeEEEcCC-CccchHHHHH-------HhcccCCcE
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLC---YSSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFA-------QVAPKIGLE 124 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~---~~~G~~al-~~~~~~~~~gd~vl~~~~-~y~~~~~~~~-------~~~~~~g~~ 124 (393)
.+.+++.|++..|+.+|++++++ +.||++|| .++..+++|||+++...- =|.+ ..... ..++.+|++
T Consensus 52 ~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDT-L~~VIG~~g~~~GSL~e~Gi~ 130 (403)
T PF06838_consen 52 DDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDT-LEEVIGIRGNGPGSLKEFGIK 130 (403)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CC-HHHHHTSSSSSSSSTGGGT-E
T ss_pred CCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhh-HHHHhCCCCCCCCChHHhCce
Confidence 46899999999999999998887 78999999 899999999999986542 3432 11111 124567888
Q ss_pred EEeeCCC-----CHHHHHhhcCCCCcEEEEecC----CCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccc-cCCCC
Q psy12791 125 VDFVDLR-----KIENLIKYIKPNTKMVWIENP----TNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYY-QKSLP 193 (393)
Q Consensus 125 v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p----~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~-~~~~~ 193 (393)
...+++. |.+.+.++++++||+|+|.-. .-|+-.+-.++++.+++++. |+++++||++|++++. ..|.+
T Consensus 131 Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~ 210 (403)
T PF06838_consen 131 YREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTE 210 (403)
T ss_dssp EEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGG
T ss_pred eEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccc
Confidence 8888874 799999999999999999533 22333333466666666664 8999999999999875 35777
Q ss_pred CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 194 WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 194 ~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
.|+|++.+|+-|..+|---.-+||++++ +++++++...... .|.+..... ...+++--.+.......+.+.
T Consensus 211 vGADl~aGSLIKNpGGgiAptGGYIaGr-~~lVe~~a~RLTaPGiG~e~G~t~~~~R--~~~QGlFlAP~vV~eAlKgai 287 (403)
T PF06838_consen 211 VGADLMAGSLIKNPGGGIAPTGGYIAGR-KDLVERAAYRLTAPGIGKEVGATLGTNR--LMFQGLFLAPHVVGEALKGAI 287 (403)
T ss_dssp GT-SEEEEETTSGGGTTT-SS-EEEEES-HHHHHHHHHHHS-TTTGGGSS--TTTHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeccceeCCCCCccCcCCEEech-HHHHHHHHhhhcCCccccccccCcchHH--HHHhHHhhchHHHHHHHHHHH
Confidence 8999999999999874333359999998 9999987543321 233222211 122222222333444444445
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc-eEEEEEcCCHHHHHHHHHhcCc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-MLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
..+..++.+.. + ..|.... .... +-.+.+ ++++.+..|++.++.
T Consensus 288 f~A~~fe~lG~-~--v~P~~~~------------~R~DiIQai~l-~~~e~l~~FC~~iQ~ 332 (403)
T PF06838_consen 288 FAAALFEKLGF-E--VSPKPDD------------PRSDIIQAIEL-GSPEKLIAFCQGIQA 332 (403)
T ss_dssp HHHHHHHHTT--E--EES-TTS--------------SSS-EEEE--SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-c--CCCCCCC------------CCCceEEEEEC-CCHHHHHHHHHHHHh
Confidence 55556655432 1 1232111 1123 458888 799999999998864
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=134.97 Aligned_cols=211 Identities=18% Similarity=0.108 Sum_probs=147.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
++|...+|++++++++|.+..+.++||+.|+ .+....+++||.| +.++|..+. .......|+..+.++.+
T Consensus 69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt---~ahIe~~Gav~vDi~~dea~~ 143 (450)
T TIGR02618 69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTT---RYHQEKNGATFVDIIIDEAHD 143 (450)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHH---HHHHHhCCeEEEeeecccccc
Confidence 4788999999999999999999999999997 5445568999976 777776543 22235667766666221
Q ss_pred -----------CHHHHHhhcCC----CCcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEEEeCccCcc------
Q psy12791 132 -----------KIENLIKYIKP----NTKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLVLDNTFLTA------ 186 (393)
Q Consensus 132 -----------d~~~l~~~l~~----~~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~livDea~~~~------ 186 (393)
|++++++.+.+ ++++|.+++++|-. |.+++ ++++.++|+++ |+.|+.|.+...+
T Consensus 144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaAR~~gNA~~I~ 222 (450)
T TIGR02618 144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAH-GIKVFYDATRCVENAYFIK 222 (450)
T ss_pred cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHc-CCEEEEEccchhhChhhhh
Confidence 79999999875 34578888888865 78865 78999999999 9999999998762
Q ss_pred -----cccCCC-------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC-----CCHHHHHHHH
Q psy12791 187 -----YYQKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV-----PSPFDCWLVT 249 (393)
Q Consensus 187 -----~~~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 249 (393)
+.+.++ ...+|.++.|..|..+ .+- +|+++.++++++++++.....+++. .+.-+...+.
T Consensus 223 ~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~-~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala 299 (450)
T TIGR02618 223 EREQGYEDKSIAEILKEMMSYADGCTMSGKKDCL-VNI--GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMA 299 (450)
T ss_pred cccccccCCCHHHHHHHHhccCcEEEEeeccCCC-CCC--ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHH
Confidence 111222 1257899999999985 432 7888878899999998776543321 1111111112
Q ss_pred hccC-CHHH-HHHHHHHHHHHHHHHHhhC
Q psy12791 250 RGLK-TLPC-RLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 250 ~~~~-~~~~-~~~~~~~~~~~l~~~l~~~ 276 (393)
.+++ .... ..+....+.++|.+.|.+.
T Consensus 300 ~gL~e~~~~~y~~~r~~~a~~La~~L~~~ 328 (450)
T TIGR02618 300 IGIREAVDYEYIEHRVKQVRYLGDKLKAA 328 (450)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 2222 2222 2333345678889988865
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-14 Score=128.60 Aligned_cols=290 Identities=13% Similarity=0.140 Sum_probs=155.9
Q ss_pred CccccCC-C-CchHHHHHHHHHHHhCCC-cEEEeccHHH-HH--HHHH-Hhc----C--------CCCeEEEcCCCccch
Q psy12791 50 GFEYSRS-N-NPTRRNLERCIASLEEAK-HGLCYSSGLG-AV--TAVT-HLL----S--------AGDHIISGDDVYGGT 110 (393)
Q Consensus 50 ~~~y~~~-~-~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al--~~~~-~~~----~--------~gd~vl~~~~~y~~~ 110 (393)
+....+| + -.+..++|+..|+++|++ +++++.+.++ .+ .++. +++ . +.-+.++|.|.|.-
T Consensus 58 G~D~RNY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDR- 136 (425)
T PF12897_consen 58 GTDCRNYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDR- 136 (425)
T ss_dssp TEBTTSS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HH-
T ss_pred CccccCCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchH-
Confidence 3445555 3 367899999999999998 6666655544 43 3332 221 1 12257999999984
Q ss_pred HHHHHHhcccCCcEEEeeCCC----CHHHHHhhcC--CCCcEEEE-ecCCCCcccccCHHHHHHHHHh---CCCcEEEEe
Q psy12791 111 YRYFAQVAPKIGLEVDFVDLR----KIENLIKYIK--PNTKMVWI-ENPTNPLMTVFDVKAISAVVKQ---HPDILLVLD 180 (393)
Q Consensus 111 ~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~--~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~---~~~~~livD 180 (393)
.-.+++.+|++.+.||+. |.+.+++.+. +..|.||+ ..-+||||.+++-+.+.+++.- .++..|+.|
T Consensus 137 ---HFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WD 213 (425)
T PF12897_consen 137 ---HFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWD 213 (425)
T ss_dssp ---HHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE
T ss_pred ---HHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEee
Confidence 446678899999999985 8999999884 34788887 4669999999997777777754 259999999
Q ss_pred CccCcccc--cCC----CC----------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 181 NTFLTAYY--QKS----LP----------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 181 ea~~~~~~--~~~----~~----------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
++|+.-++ ..+ .+ .+..++..|.||.- .||..++++.++ ++-++.++...........-..
T Consensus 214 NAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT--f~GaGva~~aaS-~~Nl~~~~~~~~~~tIgpdKvN 290 (425)
T PF12897_consen 214 NAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT--FPGAGVAFFAAS-EANLAWIKKHLSVQTIGPDKVN 290 (425)
T ss_dssp -TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS---TTSS-EEEEE--HHHHHHHHHHHHHH-S---HHH
T ss_pred cCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc--cCCcceeeeecC-HHHHHHHHHHhcCceeCccHHH
Confidence 99997544 111 11 12348899999986 577779999998 6666666555544444444444
Q ss_pred HHHHHhcc---C-CHHHHHHHHHHH----HHH----HHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 245 CWLVTRGL---K-TLPCRLKEHERG----SIE----VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 245 ~~~~~~~~---~-~~~~~~~~~~~~----~~~----l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
+..-.+.+ + .+...|+++.+- .+. +.+.|..-.++..+..|. .|.++++.+.
T Consensus 291 QLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~----------------GGYFIsld~~ 354 (425)
T PF12897_consen 291 QLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK----------------GGYFISLDVL 354 (425)
T ss_dssp HHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S----------------BSS-EEEEES
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC----------------CceEEEEecC
Confidence 44333333 3 334445555422 222 233333112455566665 2568999986
Q ss_pred C-CHHHHHHHHHhcCcccccccc-CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHH
Q psy12791 313 G-GAEETRIFLESLLIFRCAESL-GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383 (393)
Q Consensus 313 ~-~~~~~~~~~~~l~~~~~~~~~-g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l 383 (393)
+ ....+..+.+ ..++.... |..+.....| .+..|||..++...+|+..++
T Consensus 355 ~G~AkrvV~lak---eAGV~LT~AGAtfPyg~DP------------------~D~nIRiAPS~P~leel~~Am 406 (425)
T PF12897_consen 355 DGTAKRVVELAK---EAGVALTPAGATFPYGKDP------------------RDSNIRIAPSYPSLEELETAM 406 (425)
T ss_dssp TT-HHHHHHHHH---HTTEE---TTTTSGGG--T------------------TS-EEEE--SSS-HHHHHHHH
T ss_pred CChHHHHHHHHH---HhCceeCCCCCCCCCCCCC------------------CCCcEEecCCCCCHHHHHHHH
Confidence 3 4444444444 44444433 4333333222 268999999999988765544
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=132.76 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=191.0
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
....+|++.||++.+.+.+++++|.--|. .++..+ .-||=+|......|.+ ..+-.+..+++-..+..+|+++
T Consensus 216 ~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHAS----MI~GIrns~v~K~IFrHND~~h 291 (570)
T KOG1360|consen 216 KHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHAS----MIQGIRNSRVPKHIFRHNDLDH 291 (570)
T ss_pred chhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHH----HHHHhhhcCCcceeeccCCHHH
Confidence 34578999999999999999999997775 444443 3366555555555554 3444566677777778888888
Q ss_pred HHhhcCC----CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---------CCCcCcEEEEc
Q psy12791 136 LIKYIKP----NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LPWGVDIVLYS 202 (393)
Q Consensus 136 l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~~~~di~~~S 202 (393)
|++.+.. .+|+|.+++.++.+|.++|+++|.+++++| |++-++||+++.+.+... +....||+.++
T Consensus 292 L~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~y-GAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGT 370 (570)
T KOG1360|consen 292 LEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKY-GAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGT 370 (570)
T ss_pred HHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHh-CceeeeehhhhhccccCCCCCccccCCcchhhhhcccc
Confidence 8888753 379999999999999999999999999999 999999999998665321 11246899999
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHHHhc--CCCCCHHHHH---HHHhccCCH--HHHHHHHHHHHHHHHHHHhh
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVVPSPFDCW---LVTRGLKTL--PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~ 275 (393)
+.|.| |. .+||+.+. ..+++.++.....+ .....|.-.. .+.+.++.- ...++.+..+..++.+.|.+
T Consensus 371 LgKaf-Gc---VGGYIAat-~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~ 445 (570)
T KOG1360|consen 371 LGKAF-GC---VGGYIAAT-RKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME 445 (570)
T ss_pred hhhhc-cc---ccceehhh-hhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999 44 38999887 88999888665432 2333333211 122222222 33456667777888888865
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
.. +|-++. -..++-+.+ ++...+....+.|-. ... -+...++.|. .
T Consensus 446 ~G------iPVi~~-------------pSHIiPv~v-gda~l~~~~sd~Li~-~h~----iYvQaINyPT-V-------- 491 (570)
T KOG1360|consen 446 LG------IPVIPN-------------PSHIIPVRV-GDAALAKQASDILIS-KHN----IYVQAINYPT-V-------- 491 (570)
T ss_pred cC------CcccCC-------------Ccceeeeec-cCHHHHHHHHHHHHH-hcC----eEEEeccCCc-c--------
Confidence 32 122111 136788888 677766666665421 000 0111112221 0
Q ss_pred hHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......+||..+..+|.+..+.|.++|..++
T Consensus 492 -----~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw 522 (570)
T KOG1360|consen 492 -----ARGTERLRIAPTPHHTPQMMNILVNALLDVW 522 (570)
T ss_pred -----cccceeeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 0125789999999999998888888887654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-14 Score=136.35 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=154.6
Q ss_pred HHHHHHhCCCc-----EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHH-----HhcccCCcE--EEeeCCC-
Q psy12791 66 RCIASLEEAKH-----GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFA-----QVAPKIGLE--VDFVDLR- 131 (393)
Q Consensus 66 ~~la~~~~~~~-----~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~-----~~~~~~g~~--v~~~~~~- 131 (393)
+...++++.+. .|-.-||+.|. .++.++++|||+|+..+..|++...... ..+...|.. ++.++.+
T Consensus 201 era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~ 280 (586)
T PLN02271 201 ERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP 280 (586)
T ss_pred HHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc
Confidence 34445677542 46677999996 7788899999999999988876432110 112334544 4443343
Q ss_pred -----CHHHHHh-hcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----CCCCCcCcEEE
Q psy12791 132 -----KIENLIK-YIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-----KSLPWGVDIVL 200 (393)
Q Consensus 132 -----d~~~l~~-~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-----~~~~~~~di~~ 200 (393)
|.+++++ +...++|+|++....+| ..+|++++.++|+++ |+++++|.+|..+... .|+. .+|+++
T Consensus 281 ~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdev-GA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt 356 (586)
T PLN02271 281 QTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKC-GAVLMCDMAHISGLVAAKECVNPFD-YCDIVT 356 (586)
T ss_pred ccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHc-CCEEEEECcccccccccCcCCCCCc-CCcEEE
Confidence 7899998 55678999999888888 678999999999999 9999999999986542 3444 589999
Q ss_pred EcccccccCCCCceEEEEEecCh-------------------HHHHHHHHHHHhcCCCCCHHH---HHHH--Hh--ccCC
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDD-------------------SLQARLKFLQNSMGVVPSPFD---CWLV--TR--GLKT 254 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~---~~~~--~~--~~~~ 254 (393)
+|.|||+.||. +|.+++++. ++.+++....-+ +....+.. +.++ ++ ....
T Consensus 357 ~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~e 432 (586)
T PLN02271 357 STTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPE 432 (586)
T ss_pred eCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChH
Confidence 99999998875 477776531 344555432211 22222221 2111 11 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
+....++..+|++.|++.|.+.. +.-+ .+.. . ..++.+.+.+ +-..+++.++...+
T Consensus 433 fk~Ya~QVv~NAkaLA~~L~~~G-~~vv--~ggT--d------------nHlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 433 YKAYMQQVKKNAQALASALLRRK-CRLV--TGGT--D------------NHLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CeEe--eCCC--C------------cceeeecCcccCCCHHHHHHHHHHcCe
Confidence 45677788899999999997643 2211 1211 1 2455665532 45778888877665
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-14 Score=135.98 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=168.0
Q ss_pred CCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcc-----cCCc-
Q psy12791 56 SNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAP-----KIGL- 123 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~~g~- 123 (393)
++++...++.++|++.... +...+.+||++|+ .++. .......+|+.-..+|++.......+.. ..+.
T Consensus 73 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 152 (420)
T TIGR00700 73 TPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFG 152 (420)
T ss_pred cCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCC
Confidence 3456677888888887642 3577788999987 4442 2223345688778888775422222111 1111
Q ss_pred ----EEEeeCCC----------------CHHHHHhhc-----CCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCC
Q psy12791 124 ----EVDFVDLR----------------KIENLIKYI-----KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPD 174 (393)
Q Consensus 124 ----~v~~~~~~----------------d~~~l~~~l-----~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~ 174 (393)
.+..++.. +++.+++.+ .+++.+|+++..+..+|.+++ +++|.++|++| |
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g 231 (420)
T TIGR00700 153 PFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH-G 231 (420)
T ss_pred CCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-C
Confidence 12223221 144555554 245789999988888998887 89999999999 9
Q ss_pred cEEEEeCccCcccccC------CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 175 ILLVLDNTFLTAYYQK------SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 175 ~~livDea~~~~~~~~------~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
+++|+||+|..+.... ......|++ +++|.+ | +|+|+||++++ +++.+.+...........++..+..+
T Consensus 232 illI~DEV~tg~gr~g~~~a~~~~~~~pDi~--~lsK~l-~-~G~pig~v~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa 306 (420)
T TIGR00700 232 IVFIADEVQTGFARTGAMFACEHEGPEPDLI--TTAKSL-A-DGLPLSGVTGR-AEIMDAPAPGGLGGTYAGNPLACAAA 306 (420)
T ss_pred CEEEEEecccCCcccchhHHHhhcCCCCCEE--Eeeccc-c-CCcceEEEEec-HHHHhhcCCCCcCCCCCcCHHHHHHH
Confidence 9999999998753211 112245655 589999 5 78999999997 78877664322222223456666655
Q ss_pred HhccCCHHH--HHHHHHHHHHHHHHHHh----hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC------CHH
Q psy12791 249 TRGLKTLPC--RLKEHERGSIEVAKFLE----SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG------GAE 316 (393)
Q Consensus 249 ~~~~~~~~~--~~~~~~~~~~~l~~~l~----~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 316 (393)
...++.+.. ..++..+..+.+.+.|+ .++.+..+ ++.|.++++.+.+ +.+
T Consensus 307 ~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v------------------rg~G~~~~i~~~~~~~~~~~~~ 368 (420)
T TIGR00700 307 LAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDV------------------RGLGAMIAVELVDPGTTEPDAG 368 (420)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEe------------------eccceEEEEEEecCCCCCccHH
Confidence 444432211 11222222223333333 23332222 3346788887731 233
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....+.+.+...++.+.+++.+ .+.|||++....++++++...+.|.+.
T Consensus 369 ~~~~l~~~~~~~Gv~i~p~~~f-------------------------~~~lRl~p~l~~~~~~l~~~~~~l~~~ 417 (420)
T TIGR00700 369 LAERIATAAHAAGLLLLTCGMF-------------------------GNIIRFLPPLTIGDELLSEGLDILCAI 417 (420)
T ss_pred HHHHHHHHHHHCCeEEeccCCC-------------------------CCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 4566666555445544332211 368999998766677677666666654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=137.56 Aligned_cols=286 Identities=15% Similarity=0.091 Sum_probs=171.3
Q ss_pred CCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhc-----ccCC---
Q psy12791 57 NNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVA-----PKIG--- 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~-----~~~g--- 122 (393)
.++...+|.+.|++.... +...+.+||++|+ .++.. ......+|+.-..+|++......... ...+
T Consensus 81 ~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 160 (421)
T PRK09792 81 PYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP 160 (421)
T ss_pred CCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCC
Confidence 456677888888887642 3578889999987 44432 22334578888888877432221110 0111
Q ss_pred --cEEEeeCCC----------CHHHHHhhcC-----CCCcEEEEecCCCCccccc-C---HHHHHHHHHhCCCcEEEEeC
Q psy12791 123 --LEVDFVDLR----------KIENLIKYIK-----PNTKMVWIENPTNPLMTVF-D---VKAISAVVKQHPDILLVLDN 181 (393)
Q Consensus 123 --~~v~~~~~~----------d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~-~---~~~l~~l~~~~~~~~livDe 181 (393)
..+..++.. +++.+++.+. ++.++|+++..++++|..+ | +++|.++|+++ |+++|+||
T Consensus 161 ~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DE 239 (421)
T PRK09792 161 FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH-GIVMIADE 239 (421)
T ss_pred CCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEec
Confidence 113333332 2466777664 3578999998899999876 5 89999999999 99999999
Q ss_pred ccCcccc-cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH
Q psy12791 182 TFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL 255 (393)
Q Consensus 182 a~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
++..+.. ..+ .....|+ .+++|.++ +|+++|+++++ +++.+.+...........++..+..+...++.+
T Consensus 240 v~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~--~G~pigav~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l 314 (421)
T PRK09792 240 VQSGFARTGKLFAMDHYADKPDL--MTMAKSLA--GGMPLSGVVGN-ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNII 314 (421)
T ss_pred cccCCCCCCchhHHHhcCCCCcE--EEeehhhc--CCCceEEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 9986422 111 1123564 57899994 67999999997 788776642222122234566665444444332
Q ss_pred HH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC------HHHHHHHHH
Q psy12791 256 PC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG------AEETRIFLE 323 (393)
Q Consensus 256 ~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 323 (393)
.. ..++..+..+++.+.|+. +|.+ .+.+|.|.++++.+.+. ......+.+
T Consensus 315 ~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v------------------~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~ 376 (421)
T PRK09792 315 DKESLCERANQLGQRLKNTLIDAKESVPAI------------------AAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQ 376 (421)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhCCCc------------------ceecccceEEEEEecCCccCCcchHHHHHHHH
Confidence 21 222222333333333332 2221 12355678899999532 133455555
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...++.+... |..++.|||.+.+..++++++.+.+++.++.
T Consensus 377 ~~~~~Gv~i~~~-------------------------g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 377 RALAQGLLLLTC-------------------------GAYGNVIRFLYPLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred HHHHCCcEEeec-------------------------CCCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 554434333110 1115789999999888888888888887653
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=136.61 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=172.9
Q ss_pred CCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhccc-----CC--
Q psy12791 56 SNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPK-----IG-- 122 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-----~g-- 122 (393)
++++...++.+.|++.... +...+.+||++|+ .++. .......+|+.-...|++.......+... .+
T Consensus 80 ~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~ 159 (421)
T PRK06777 80 VPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFG 159 (421)
T ss_pred cCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCC
Confidence 3456677888888887642 3678889999987 4443 22233456888888887754322211110 00
Q ss_pred ---cEEEeeCCC----------CHHHHHhhcC-----CCCcEEEEecCCCCccccc-C---HHHHHHHHHhCCCcEEEEe
Q psy12791 123 ---LEVDFVDLR----------KIENLIKYIK-----PNTKMVWIENPTNPLMTVF-D---VKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 123 ---~~v~~~~~~----------d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~-~---~~~l~~l~~~~~~~~livD 180 (393)
..+..++.. +++.+++.+. +++.+|+++..++..|... | +++|.++|+++ |+++|+|
T Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~D 238 (421)
T PRK06777 160 PFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH-GILLIAD 238 (421)
T ss_pred CCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 012222221 2555666653 3478899988888888654 4 89999999999 9999999
Q ss_pred CccCcccc-cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC
Q psy12791 181 NTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 181 ea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
|+|..+.. ... .....|++ +++|.+ | +|+|+||++++ +++.+.+...........++..+..+...++.
T Consensus 239 Ev~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l-~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~ 313 (421)
T PRK06777 239 EVQTGFARTGKLFAMEYYDVKPDLI--TMAKSL-G-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDV 313 (421)
T ss_pred chhhCCccCCchhhhhhcCCCCCEE--eeehhh-c-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 99986421 111 11235665 689999 5 78999999997 78877664322222223466666666666543
Q ss_pred HH--HHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC------CHHHHHHHH
Q psy12791 255 LP--CRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG------GAEETRIFL 322 (393)
Q Consensus 255 ~~--~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 322 (393)
++ ...++..+..+.+.+.|+++ +.+.. .++.|.++.+.+.. +.+....+.
T Consensus 314 ~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G~~~~i~~~~~~~~~~~~~~~~~l~ 375 (421)
T PRK06777 314 IAEEKLCQRALILGAHLVEVLEKAKASCPAIVD------------------IRARGSMVAVEFNDPQTGKPSPEFTRQYQ 375 (421)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE------------------ecCceEEEEEEEecCccCCccHHHHHHHH
Confidence 32 23444455555565655542 22211 24456777766632 123345555
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+...++.+.+++. ..+.+||++.+.-++++++...+.|++..
T Consensus 376 ~~~~~~Gv~i~~~~~-------------------------~g~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 376 RQALEEGLLLLSCGV-------------------------HGNVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred HHHHhCCeEEeecCC-------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 544434444433221 13689999988888888887777776553
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=135.94 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=167.3
Q ss_pred CchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc-------cCC--c
Q psy12791 58 NPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP-------KIG--L 123 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~-------~~g--~ 123 (393)
++...+|.+.|++..... ...+.+||++|+ .++.. ......+|+.-...|++.......... .++ .
T Consensus 83 ~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 162 (443)
T PRK08360 83 PVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELS 162 (443)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCC
Confidence 456678888888887543 466678888887 44432 223345677777777664311111100 001 1
Q ss_pred EEEeeCCC-----------------CHHHHHhhcC-----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEE
Q psy12791 124 EVDFVDLR-----------------KIENLIKYIK-----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILL 177 (393)
Q Consensus 124 ~v~~~~~~-----------------d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~l 177 (393)
.+.+++.. +++.+++.+. +++++|+++..+||+|.+++ +++|.++|+++ |+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~-g~ll 241 (443)
T PRK08360 163 DVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH-GILL 241 (443)
T ss_pred CcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEE
Confidence 12333221 1233444442 46889999888899999887 88999999999 9999
Q ss_pred EEeCccCcccc-cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 178 VLDNTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 178 ivDea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
|+||+|..+.. ... .....|++ +++|.+ | +|+|+|+++++ +++.+.+...........++..+..+...
T Consensus 242 I~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l-~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~ 316 (443)
T PRK08360 242 VVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPL-G-GGLPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAV 316 (443)
T ss_pred EEeccccCCCcCccchhhhhcCCCCCEE--Eecccc-c-CCceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHH
Confidence 99999986421 111 12235665 679999 5 78999999997 78888775332222333456666555555
Q ss_pred cCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-------HHHH
Q psy12791 252 LKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-------AEET 318 (393)
Q Consensus 252 ~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 318 (393)
++.+.. ..++..+....+.+.|++ ++.+. +.++.|.++.+.+..+ ...+
T Consensus 317 l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~------------------~vrg~Gl~~gie~~~~~~~~~~~~~~~ 378 (443)
T PRK08360 317 IEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIG------------------DVRGIGLMIGVDLVKDRETKERAYEEA 378 (443)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCee------------------eeeccceEEEEEEecCCcccCccHHHH
Confidence 544321 233444444444444442 22221 2245577888877421 1234
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+...+...++-+.. ...+.+|+++.+..++++++.+.+++++.
T Consensus 379 ~~~~~~l~~~Gi~~~~---------------------------~~~~~lr~~P~l~~t~~~id~~~~~l~~~ 423 (443)
T PRK08360 379 AKVVWRAWELGLIVTF---------------------------FSGNVLRIQPPLTIEKEVLDEGLDILEEA 423 (443)
T ss_pred HHHHHHHHHCCeEEee---------------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4555554433322210 01467999999998888888887777654
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-14 Score=136.26 Aligned_cols=288 Identities=14% Similarity=0.084 Sum_probs=175.3
Q ss_pred CCCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHHHh--c------CCCCeEEEcCCCccchHHHHHHhccc----
Q psy12791 56 SNNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVTHL--L------SAGDHIISGDDVYGGTYRYFAQVAPK---- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~~~--~------~~gd~vl~~~~~y~~~~~~~~~~~~~---- 120 (393)
++++...+|.++|++... .+...+.+||++|+ .++... . ....+|+.....|++...........
T Consensus 82 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~ 161 (423)
T PRK05964 82 FTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMH 161 (423)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccc
Confidence 456667788999988874 34577788999987 444321 1 12357888888887754322221111
Q ss_pred -------CCcEEEeeCCCC-----HHHHHhhcC---CCCcEEEEec-CCCCcccccC----HHHHHHHHHhCCCcEEEEe
Q psy12791 121 -------IGLEVDFVDLRK-----IENLIKYIK---PNTKMVWIEN-PTNPLMTVFD----VKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 121 -------~g~~v~~~~~~d-----~~~l~~~l~---~~~~~v~l~~-p~nptG~~~~----~~~l~~l~~~~~~~~livD 180 (393)
.+...+.++..| ++++++.+. +++.+|+++. .++..|...+ +++|.++|++| |+++|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~-g~llI~D 240 (423)
T PRK05964 162 ALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH-GVLLIFD 240 (423)
T ss_pred ccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 122233333334 777777774 3567888877 5888888875 89999999999 9999999
Q ss_pred CccCccc-ccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH---HH-hcCC--CCCHHHHHHH
Q psy12791 181 NTFLTAY-YQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL---QN-SMGV--VPSPFDCWLV 248 (393)
Q Consensus 181 ea~~~~~-~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~---~~-~~~~--~~~~~~~~~~ 248 (393)
|++..+. .... .....|++ +++|+++ ..++++|+++++ +++.+.+... .. ..+. ..++..+..+
T Consensus 241 Ev~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa 316 (423)
T PRK05964 241 EIATGFGRTGTLFACEQAGVSPDIM--CLSKGLT-GGYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAA 316 (423)
T ss_pred chhhCCCcCcchhHHHhcCCCCCee--eeehhhh-cCcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHH
Confidence 9997531 1111 12245665 5789994 444779998887 8888876421 00 1111 2456666555
Q ss_pred HhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH--HHHHHHHHh
Q psy12791 249 TRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA--EETRIFLES 324 (393)
Q Consensus 249 ~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 324 (393)
...++.+. ...++..+..+.+.+.|+++.. +|.+ .+.++.|.++.+.+.++. +....+.+.
T Consensus 317 ~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i----------~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~ 381 (423)
T PRK05964 317 NASLDLFEDEPVLERVAALSAGLAEGLEPFRD-----LPGV----------ADVRVLGAIGAVELDRPVLERDGPALRAF 381 (423)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-----CCCe----------EEeecccEEEEEEeccCcchhHHHHHHHH
Confidence 55554332 2345555555666666654321 1110 112345677888885322 135556665
Q ss_pred cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+...++-+.. ..+.+|+++++..++++++.+.++|+++.
T Consensus 382 l~~~Gv~v~~----------------------------~~~~lR~~p~l~~t~edId~~v~~l~~al 420 (423)
T PRK05964 382 ALERGVLLRP----------------------------LGNTIYLMPPYIITAEELDRITDAIVEVA 420 (423)
T ss_pred HHHCCeEEEe----------------------------cCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 5443332211 02579999999999999999999987653
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=136.12 Aligned_cols=285 Identities=16% Similarity=0.078 Sum_probs=167.3
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc------CCC-CeEEEcCCCccchHHHHHHhcccCCc------
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL------SAG-DHIISGDDVYGGTYRYFAQVAPKIGL------ 123 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~------~~g-d~vl~~~~~y~~~~~~~~~~~~~~g~------ 123 (393)
++...+|.+.|++..+.+..++++||++|+ .++.... ++| ++|+..+..|++............+.
T Consensus 77 ~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~ 156 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAP 156 (395)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCC
Confidence 344445555555544445788889999986 4443321 123 56888888777643222111111100
Q ss_pred ---EEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-cc-----C
Q psy12791 124 ---EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-YQ-----K 190 (393)
Q Consensus 124 ---~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~~-----~ 190 (393)
.+...+..|++++++.+.+++++|+++..++..|...| +++|.++|+++ |+++|+||++..+- .. .
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~~~a~~ 235 (395)
T PRK03715 157 QVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGTLFAYE 235 (395)
T ss_pred CCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcchhhHh
Confidence 12233446889999999878899999999999998887 99999999999 99999999998520 01 1
Q ss_pred CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHH
Q psy12791 191 SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIE 268 (393)
Q Consensus 191 ~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 268 (393)
......|++ +++|.++| |+.+|.++++ +++...... .........|..+..+...++.++ ...++..+....
T Consensus 236 ~~gv~PDi~--t~gK~lg~--G~p~~av~~~-~~i~~~~~~-~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~ 309 (395)
T PRK03715 236 LSGIEPDIM--TLGKGIGG--GVPLAALLAK-AEVAVFEAG-DQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEY 309 (395)
T ss_pred hcCCCCcee--eehhhhhC--CcceEEEEEc-cccccccCC-CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122346765 67899953 5678998887 565421111 000111235666666666555443 234555555556
Q ss_pred HHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 269 l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
+.+.|+++.. .++ + .+.++.|.++.+.+..+ ..........+...++-+..
T Consensus 310 l~~~L~~l~~----~~~-i----------~~vrG~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~------------- 361 (395)
T PRK03715 310 LKEKLLELSE----ERG-L----------EGERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNA------------- 361 (395)
T ss_pred HHHHHHHHhh----cCC-c----------CeEEcceeEEEEEecCchHHHHHHHHHhccCCCEEEee-------------
Confidence 6665653210 000 0 11245578889998421 12222222322111211100
Q ss_pred cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 348 THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+..||+++....++++++.+.++|++..
T Consensus 362 --------------~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 362 --------------PRPNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred --------------cCCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 013679999999999999999888887653
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=138.79 Aligned_cols=209 Identities=18% Similarity=0.188 Sum_probs=141.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
|+....+.++.+|+.+|++...++++|++. + .++++++++||+|++++.+|-+.+ +.+...|+++++++..
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~----~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY----NALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH----HHHHHHTEEEEEEEEEE-T
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCeEEEecCCccc
Confidence 456678899999999999999999999886 7 888899999999999999998743 3567789999988663
Q ss_pred -------CH-----HHHHhhcCC--CCc---EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC----
Q psy12791 132 -------KI-----ENLIKYIKP--NTK---MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---- 190 (393)
Q Consensus 132 -------d~-----~~l~~~l~~--~~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---- 190 (393)
++ +.+++++++ +.+ +|++++|+.- |.+.++++|.++|+++ +.+|+||||++......
T Consensus 140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~-Gv~~di~~I~~~~h~~-~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYY-GVCYDIKEIAEICHKH-GIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TT-SEEE-HHHHHHHHCCT-ECEEEEE-TT-TTGGCSGGGT
T ss_pred cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCC-eEEECHHHHHHHhccc-CCEEEEEccccccccCCCCcc
Confidence 34 788887753 344 4999999854 9999999999999999 99999999999743222
Q ss_pred -CCCCcCc-------EEEEcccccccCCCCceEEEEEecChH--HHHHHHHHHHhcCCCCCHHHHH-----HHHhccC--
Q psy12791 191 -SLPWGVD-------IVLYSLTKYMNGHSDVVMGATVTNDDS--LQARLKFLQNSMGVVPSPFDCW-----LVTRGLK-- 253 (393)
Q Consensus 191 -~~~~~~d-------i~~~S~sK~~~G~~G~r~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-- 253 (393)
....++| +++.|.||.++++.. ..++-.++.. -.++++.......++ ||.... .+.+.++
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~altQ--ts~lh~~~~~~v~~~~~~~~l~~~~TT-SPSY~lmASlD~a~~~m~~~ 294 (417)
T PF01276_consen 218 SALALGADRPNDPGIIVVQSTHKTLPALTQ--TSMLHVKGDRIVDHERVNEALSMHQTT-SPSYPLMASLDVARAQMEEE 294 (417)
T ss_dssp TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT---EEEEEETCCCTTHHHHHHHHHHHS-S-S--HHHHHHHHHHHHHHSHH
T ss_pred chhhccCccccccceeeeechhhccccccc--ceEEEecCCCcccHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhhh
Confidence 2336788 999999999977665 7777776443 234555433333222 222111 1111111
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q psy12791 254 TLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~ 274 (393)
.-...+++..+.+..+++.++
T Consensus 295 ~G~~l~~~~i~~a~~~R~~i~ 315 (417)
T PF01276_consen 295 EGRELLEEAIELAEEFRKKIN 315 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 112345555666677777773
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-14 Score=135.48 Aligned_cols=292 Identities=17% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCchHHHHHHHHHHHhC-CCcEE-EeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc-----c--CC-
Q psy12791 56 SNNPTRRNLERCIASLEE-AKHGL-CYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP-----K--IG- 122 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~-~~~~i-~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~--~g- 122 (393)
+.++...+|.++|+++.. ..+.+ +.+||++|. .++.. ......+|+..+..|++.......+.. . .+
T Consensus 83 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 162 (433)
T PRK08117 83 IYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQP 162 (433)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCC
Confidence 346778899999999873 23444 458999986 44432 123345677777777764322111100 0 00
Q ss_pred --cEEEeeCCC-----------------CHHHHHhhcC-----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCC
Q psy12791 123 --LEVDFVDLR-----------------KIENLIKYIK-----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPD 174 (393)
Q Consensus 123 --~~v~~~~~~-----------------d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~ 174 (393)
..+..+|.. +++++++.+. +++.+|+++......|.+.+ +++|.++|++| |
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g 241 (433)
T PRK08117 163 LLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH-G 241 (433)
T ss_pred CCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc-C
Confidence 112222221 3445555442 35788999988888899988 99999999999 9
Q ss_pred cEEEEeCccCcccc-cCCC---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 175 ILLVLDNTFLTAYY-QKSL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 175 ~~livDea~~~~~~-~~~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
+++|+||+|..+.. .... .++...-+.+++|.+ | .|+++|+++++ +++.+.+...........++..+..+..
T Consensus 242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~l-g-~G~pigav~~~-~~i~~~~~~~~~~~T~~~np~~~aaa~a 318 (433)
T PRK08117 242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGI-A-SGLPLSAVVAS-KELMEQWPLGSHGTTFGGNPVACAAALA 318 (433)
T ss_pred CEEEEecchhccCccccchhHhhcCCCCCEeehhhhc-c-CCCcceeEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHH
Confidence 99999999996311 1111 122222235899999 5 68999999997 7777766422221122345666666655
Q ss_pred ccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-----CHHHHHHHHH
Q psy12791 251 GLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-----GAEETRIFLE 323 (393)
Q Consensus 251 ~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 323 (393)
.++.+. ..+++..+..+.+.+.|+.+.. .++. ..+.++.|.++.+.+.. +......+.+
T Consensus 319 ~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~----------~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~ 384 (433)
T PRK08117 319 TLEVIKEEKLLDNANEMGAYALERLEVLKE----KHPV----------IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILD 384 (433)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHh----cCCc----------eeeeecCCcEEEEEEecCCCCcchHHHHHHHH
Confidence 554432 1233344444444444443210 0110 01234556777888742 1233455555
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+...++.+... |...+.+|+++....++++++.+.++|.++
T Consensus 385 ~l~~~Gv~~~~~-------------------------g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~ 426 (433)
T PRK08117 385 KCLEKGLLFYLC-------------------------GNAGNVLRMIPPLTVTKEEIDEGLDILDEA 426 (433)
T ss_pred HHHHCCCEEeec-------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 554333322110 111478999998888888887777777654
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=127.00 Aligned_cols=282 Identities=17% Similarity=0.193 Sum_probs=183.8
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
......|+.+||++.+.+|+|+..++-.|. .++-+++.|.|.|+.....|.+..+-. .++++++ .+ |+.++
T Consensus 111 q~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~---dv~~l 182 (417)
T KOG1359|consen 111 QDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HV---DVFDL 182 (417)
T ss_pred hHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cc---hhHHH
Confidence 356678999999999999999999999995 677778889998888877776543322 3344322 22 33334
Q ss_pred Hhh----cCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---------CCCcCcEEEEcc
Q psy12791 137 IKY----IKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LPWGVDIVLYSL 203 (393)
Q Consensus 137 ~~~----l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~~~~di~~~S~ 203 (393)
+.. .+-+-++|+....-+..|.+.|+++|.+++++| |+++++||+++.+++... ..-..|++..++
T Consensus 183 ~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kY-gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTL 261 (417)
T KOG1359|consen 183 EHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKY-GALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTL 261 (417)
T ss_pred HHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhc-CcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhh
Confidence 433 333567888888889999999999999999999 999999999998765321 112478999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
+|.++|. .+||..++ +.+++.++..... +.+...|.....+.+.++.+ .....+...+.+++.++++.- +
T Consensus 262 gKAlGga---~GGyttgp-~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-G 336 (417)
T KOG1359|consen 262 GKALGGA---SGGYTTGP-KPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA-G 336 (417)
T ss_pred hhhhcCC---CCCCccCC-hhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-C
Confidence 9999543 38999997 8888888654432 33333333322222222211 123334445566666666521 1
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
+.+.+ . .-++..+-+ |+.+.+.++.+.+-..++-+-.. ..|. . |
T Consensus 337 ---ftIsg-~--------------~hPI~pv~l-Gda~lA~~~ad~lLk~Gi~Vigf------s~Pv-V-----P----- 380 (417)
T KOG1359|consen 337 ---FTISG-A--------------SHPICPVML-GDARLASKMADELLKRGIYVIGF------SYPV-V-----P----- 380 (417)
T ss_pred ---ceecC-C--------------CCCccceec-ccHHHHHHHHHHHHhcCceEEee------cCCc-C-----C-----
Confidence 11111 0 014566666 77777777777664333221100 0111 0 0
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.....||+.++..+++++|+++.+|+.++.+
T Consensus 381 ---~gkariRVqiSAaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 381 ---KGKARIRVQISAAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred ---CCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence 1246799999999999999999999987653
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=132.14 Aligned_cols=210 Identities=17% Similarity=0.124 Sum_probs=130.1
Q ss_pred CchHHHHHH----HHHHHhCCC-cEEEe----ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHH--HHHHhcccCCcE-
Q psy12791 58 NPTRRNLER----CIASLEEAK-HGLCY----SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYR--YFAQVAPKIGLE- 124 (393)
Q Consensus 58 ~~~~~~lr~----~la~~~~~~-~~i~~----~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~--~~~~~~~~~g~~- 124 (393)
.....++++ ...+.++.. ..+.+ .||+.|. .++.+++++||+|+..+...++... ......+..+..
T Consensus 75 ~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~ 154 (475)
T PLN03226 75 NEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSI 154 (475)
T ss_pred ChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceE
Confidence 345556655 344455655 45544 8999996 7888999999999985532222110 011111111222
Q ss_pred ---EEeeCCC------CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----
Q psy12791 125 ---VDFVDLR------KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ----- 189 (393)
Q Consensus 125 ---v~~~~~~------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~----- 189 (393)
+..+..+ |++++++.+.. ++++|++. .++ +|...|+++|.++|+++ |+++++|++|..+...
T Consensus 155 ~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~ 231 (475)
T PLN03226 155 YFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKV-GALLMCDMAHISGLVAAQEAA 231 (475)
T ss_pred EEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHc-CCEEEEEchhhhCcccCCCCC
Confidence 2233334 89999998863 67776653 333 68899999999999999 9999999999986643
Q ss_pred CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHH--------------HHHHHHHH-hcCCCCCHHHHHHHHhccC-
Q psy12791 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ--------------ARLKFLQN-SMGVVPSPFDCWLVTRGLK- 253 (393)
Q Consensus 190 ~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 253 (393)
.++. ++|++++|+||++.|+. +|+++++ +.+. +.+..... .+.+.+.+...+.+..+++
T Consensus 232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~-~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~ 306 (475)
T PLN03226 232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFR-KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQ 306 (475)
T ss_pred CCCC-CCeEEEecCcccccCCC---ceEEEEc-hhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHH
Confidence 2232 68999999999997665 5888876 4332 12221111 1222233333322222222
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHhh
Q psy12791 254 ----TLPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 254 ----~~~~~~~~~~~~~~~l~~~l~~ 275 (393)
......++..++++.+.+.|.+
T Consensus 307 i~~~~~~~~~~~~~~na~~L~~~L~~ 332 (475)
T PLN03226 307 AMTPEFKAYQKQVKANAAALANRLMS 332 (475)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 2444677788889999998876
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=130.05 Aligned_cols=210 Identities=17% Similarity=0.062 Sum_probs=145.0
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC------
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD------ 129 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~------ 129 (393)
.+|...+|++.+++++|.+..+.++||+.|+ .+....+++||.| +..+|..+.. ......|+..+.+.
T Consensus 76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~---ahI~~~Ga~fvDi~~d~a~~ 150 (460)
T PRK13237 76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTR---YHQELNGGIFVDIIIDEAHD 150 (460)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhH---HHHHhCCcEEEeeecccccc
Confidence 4688999999999999999999999999997 5444568899964 5555554322 22355566555442
Q ss_pred ------CC---CHHHHHhhcCCC----CcEEEEecCCCCc-cccc---CHHHHHHHHHhCCCcEEEEeCccCcc------
Q psy12791 130 ------LR---KIENLIKYIKPN----TKMVWIENPTNPL-MTVF---DVKAISAVVKQHPDILLVLDNTFLTA------ 186 (393)
Q Consensus 130 ------~~---d~~~l~~~l~~~----~~~v~l~~p~npt-G~~~---~~~~l~~l~~~~~~~~livDea~~~~------ 186 (393)
.+ |++++++.+.++ +++|.+++++|.. |... +++++.++|+++ |+.||+|.+...+
T Consensus 151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~ 229 (460)
T PRK13237 151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIK 229 (460)
T ss_pred cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhc
Confidence 11 889999998753 4578888888888 5666 479999999999 9999999999864
Q ss_pred -----cccCCC-------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc-C----CCCCHHH-HHHH
Q psy12791 187 -----YYQKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-G----VVPSPFD-CWLV 248 (393)
Q Consensus 187 -----~~~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~-~~~~ 248 (393)
+...++ -...|.++.|++|.+. .+- +|+++++++++.++++.....+ | ...+.-+ ..++
T Consensus 230 ~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~-~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alA 306 (460)
T PRK13237 230 EREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCL-VNI--GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMA 306 (460)
T ss_pred ccccccCCCcHhHHhhhccCcCcEEEEeCCCCCC-CCC--ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHH
Confidence 111222 1247999999999984 332 7999999999999998775432 1 1222212 2222
Q ss_pred HhccCCHH-HHHHHHHHHHHHHHHHHhh
Q psy12791 249 TRGLKTLP-CRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 249 ~~~~~~~~-~~~~~~~~~~~~l~~~l~~ 275 (393)
....+... ...+....+.++|.+.|.+
T Consensus 307 vgl~E~~~~~y~~~ri~~~~~l~~~L~~ 334 (460)
T PRK13237 307 IGIEESVQYEYIEHRVGQVRYLGEKLLA 334 (460)
T ss_pred hHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 3444555677888888865
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-14 Score=146.44 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHh-cCC--CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHL-LSA--GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~-~~~--gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
.++++.+|++.|.+ .++.+..+ +.+. .+++++ .++ +|+|++++..|+++...+...++..|++++.++.++ +
T Consensus 124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d 201 (954)
T PRK05367 124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--A 201 (954)
T ss_pred HHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--C
Confidence 46788899999988 44444444 4445 334343 344 489999999999988777888889999999998753 1
Q ss_pred HHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCc-ccccCCCCCcCcEEEEccccc-----ccC
Q psy12791 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT-AYYQKSLPWGVDIVLYSLTKY-----MNG 209 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~-~~~~~~~~~~~di~~~S~sK~-----~~G 209 (393)
+. .+++..+++.+| |.+|.+.|+++|.++||++ |+++++|..+.. .....|-++|+|++++|.+|| ++
T Consensus 202 ~~---~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~-Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~G- 275 (954)
T PRK05367 202 LD---HDDVFGVLLQYP-GTSGEVRDYTALIAAAHAR-GALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFG- 275 (954)
T ss_pred CC---cccEEEEEEecC-CCCeeeccHHHHHHHHHHc-CCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCC-
Confidence 11 235666666676 5889999999999999999 999999986633 334456668999999999999 64
Q ss_pred CCCceEEEEEecChHHHHHH
Q psy12791 210 HSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~ 229 (393)
-|| .|+++++ +++.+.+
T Consensus 276 GP~--aGflavr-~~~~r~l 292 (954)
T PRK05367 276 GPH--AAYFAVR-DAYKRSM 292 (954)
T ss_pred CCC--EEEEEEC-HHHHhhC
Confidence 456 9999998 6666665
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-14 Score=134.87 Aligned_cols=286 Identities=13% Similarity=0.132 Sum_probs=176.1
Q ss_pred chHHHHH----HHHHHHhCCCc---------EEEeccHHHH-HHHHHHh----cC------CCC-eEEEcCCCccchHHH
Q psy12791 59 PTRRNLE----RCIASLEEAKH---------GLCYSSGLGA-VTAVTHL----LS------AGD-HIISGDDVYGGTYRY 113 (393)
Q Consensus 59 ~~~~~lr----~~la~~~~~~~---------~i~~~~G~~a-l~~~~~~----~~------~gd-~vl~~~~~y~~~~~~ 113 (393)
|...+++ +.+++++|.++ .+++++|+.+ +.++... ++ ... .|++++.+|.+
T Consensus 118 p~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S---- 193 (490)
T PLN02880 118 PAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA---- 193 (490)
T ss_pred cccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH----
Confidence 4444444 44666777663 4566666777 4443221 11 012 35567777774
Q ss_pred HHHhcccCCcE---EEeeCCC-------CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 114 FAQVAPKIGLE---VDFVDLR-------KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 114 ~~~~~~~~g~~---v~~~~~~-------d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
+.+++...|+. ++.+|.+ |+++|++.+.++ +-+|+.+..+..||.+-|+++|.++|+++ |+|+
T Consensus 194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~-~iwl 272 (490)
T PLN02880 194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSN-GMWF 272 (490)
T ss_pred HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHc-CCEE
Confidence 77888888874 5666553 788888887532 45666688899999999999999999999 9999
Q ss_pred EEeCccCcccccCC-----CC--CcCcEEEEcccccccCCCCceEEEEEecChHH-HHHHHHHHHhcC------------
Q psy12791 178 VLDNTFLTAYYQKS-----LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMG------------ 237 (393)
Q Consensus 178 ivDea~~~~~~~~~-----~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~-~~~~~~~~~~~~------------ 237 (393)
+||.+|+.+....+ +. ..+|.++.++|||+..+.| .|+++.+++.. .+.+.....+..
T Consensus 273 HVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~ 350 (490)
T PLN02880 273 HVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDY 350 (490)
T ss_pred EEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCCh
Confidence 99999998654321 11 2579999999999976666 88888875432 232321111100
Q ss_pred --------CCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 238 --------VVPSPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 238 --------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
.-...+..|+.++ +.+.+..+.++..+.++++.+.+++.+.++.+.-|. .+++
T Consensus 351 ~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~-----------------~~iv 413 (490)
T PLN02880 351 KDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI-----------------FSLV 413 (490)
T ss_pred hccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc-----------------eEEE
Confidence 0001222333322 334566677777788888899998877765433222 3677
Q ss_pred EEEEcC---C----HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh-HHH
Q psy12791 308 SFYVNG---G----AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY-TDL 379 (393)
Q Consensus 308 ~~~~~~---~----~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~-~~~ 379 (393)
.|++++ + .+.+.++.+++...+...-. .+.. ....++|++++..+| +++
T Consensus 414 ~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~---~t~~--------------------~g~~~lR~~~~n~~tt~~d 470 (490)
T PLN02880 414 CFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFIS---HTVL--------------------SGKYVLRFAVGAPLTEERH 470 (490)
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEE---EEEE--------------------CCEEEEEEEecCCCCCHHH
Confidence 787753 1 12234455554321111100 0000 014689999987754 588
Q ss_pred HHHHHHHHHHhh
Q psy12791 380 IADLDQALRKAC 391 (393)
Q Consensus 380 i~~l~~al~~~~ 391 (393)
++.+.+.+.++.
T Consensus 471 i~~~~~~i~~~~ 482 (490)
T PLN02880 471 VTAAWKVLQDEA 482 (490)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=133.79 Aligned_cols=179 Identities=13% Similarity=0.105 Sum_probs=125.6
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCc---EEEeeCCC-----CHHHHHhhcC----CCCcEEEEe--cCCCCcccccCHH
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGL---EVDFVDLR-----KIENLIKYIK----PNTKMVWIE--NPTNPLMTVFDVK 163 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~---~v~~~~~~-----d~~~l~~~l~----~~~~~v~l~--~p~nptG~~~~~~ 163 (393)
..|++++.+|.+ +.++++..|+ +++.+|.+ |+++|++.+. .+++.++++ ..++.||.+.|++
T Consensus 210 ~~v~~S~~~H~S----~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~ 285 (522)
T TIGR03799 210 LAILVSERGHYS----LGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLD 285 (522)
T ss_pred eEEEECCCchHH----HHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHH
Confidence 468888888886 5566777777 78888775 7888888875 355655554 6677999999999
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccCC-----CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQKS-----LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~~-----~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
+|.++|+++ |+++++|.+|+.+....+ +. .++|.++.|.|||+.|+.| +|.++.+++.+.+.+.....+.
T Consensus 286 eIa~i~~~~-g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl 362 (522)
T TIGR03799 286 EMADIAQEL-GCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYI 362 (522)
T ss_pred HHHHHHHHc-CCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchh
Confidence 999999999 999999999997543222 12 2689999999998878888 8999887676655543211110
Q ss_pred --------------CCCC-CHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHhhCCCcceEe
Q psy12791 237 --------------GVVP-SPFDCWLVTRGL--KTLPCRLKEHERGSIEVAKFLESHPCVKGVL 283 (393)
Q Consensus 237 --------------~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~ 283 (393)
++-. ..+..++.++.+ +.++...++..+.++.+.+.|++.|.++.+.
T Consensus 363 ~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~ 426 (522)
T TIGR03799 363 LRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVT 426 (522)
T ss_pred cCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEec
Confidence 1101 111223333333 3456667777788888899998888876444
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=131.47 Aligned_cols=285 Identities=15% Similarity=0.113 Sum_probs=167.4
Q ss_pred CchHHHHHHHHHHHhC----CCc-EEEe-ccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhc------ccCC
Q psy12791 58 NPTRRNLERCIASLEE----AKH-GLCY-SSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVA------PKIG 122 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~----~~~-~i~~-~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~------~~~g 122 (393)
++...+|.++|++... ..+ ..++ +||++|+ .++.. ......+|+.-...|++......... ...+
T Consensus 77 ~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 156 (412)
T TIGR02407 77 TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAG 156 (412)
T ss_pred cHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCC
Confidence 4566778888887642 222 3444 6999987 44432 22334678888888877543222211 1111
Q ss_pred ---cEEEeeCCC--------CHHHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeC
Q psy12791 123 ---LEVDFVDLR--------KIENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDN 181 (393)
Q Consensus 123 ---~~v~~~~~~--------d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDe 181 (393)
..+..+|.. +++.+++.+. +++.+|+++..+++.|.+.+ +++|.++|+++ |+++|+||
T Consensus 157 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DE 235 (412)
T TIGR02407 157 VPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRH-DILLIVDD 235 (412)
T ss_pred CCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEec
Confidence 133445542 3666777764 34688999999999998654 89999999999 99999999
Q ss_pred ccCcc------cccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-
Q psy12791 182 TFLTA------YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 182 a~~~~------~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (393)
++..+ +.........|++ +++|++ |..|+++|+++++ +++ +.+...........++..+..+...++.
T Consensus 236 V~tG~GRtG~~~a~~~~~v~PDi~--~~~K~l-g~~G~pigav~~~-~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~ 310 (412)
T TIGR02407 236 IQAGCGRTGTFFSFEPAGIEPDIV--CLSKSI-SGYGLPLALTLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEYY 310 (412)
T ss_pred hhhCCCccchhHHhcccCCCCCEE--Eechhc-cCCccceeEEEEc-hhh-hccCCCccCCCCCccHHHHHHHHHHHHHH
Confidence 99742 1111223456776 477999 4448999999997 554 4332111111222345544433333321
Q ss_pred HH--HHHHHHHHHHHHHHHHHh----hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 255 LP--CRLKEHERGSIEVAKFLE----SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 255 ~~--~~~~~~~~~~~~l~~~l~----~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
+. ...++..+..+.+.+.|+ .++... . +.++.|.++++.++ +.+....+.+.+...
T Consensus 311 i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~----------------~vrg~Gl~~~l~l~-~~~~~~~~~~~~~~~ 372 (412)
T TIGR02407 311 WSDDAFEKAVQRKSEIIQERLDRIVAEYPELI-K----------------QVRGRGLMQGIECG-DGDLAGKIAKAAFEN 372 (412)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhhCCCce-E----------------eeecceeEEEEEec-ChHHHHHHHHHHHHC
Confidence 11 122333333334444333 222110 1 12445778899994 455566676666544
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++.+... +...+.||+++....++++++.+.+++++..
T Consensus 373 Gv~v~~~-------------------------~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l 410 (412)
T TIGR02407 373 GLIIETS-------------------------GPNDEVIKLLPPLTIDEETLQQGLDILEQAV 410 (412)
T ss_pred CCEEecc-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4433211 1114689999999999999999988887653
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=130.98 Aligned_cols=289 Identities=15% Similarity=0.110 Sum_probs=177.4
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHH--Hhc---CCCCeEEEcCCCccchHHHHHHhcc------c--
Q psy12791 57 NNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVT--HLL---SAGDHIISGDDVYGGTYRYFAQVAP------K-- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~--~~~---~~gd~vl~~~~~y~~~~~~~~~~~~------~-- 120 (393)
.++...++.++|++..... ...+.+||++|. .++. ... ....+|+.....|++.......... .
T Consensus 115 ~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~ 194 (442)
T TIGR03372 115 LDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM 194 (442)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC
Confidence 4677788899998876543 366778899987 4442 122 1235788888888775322211100 0
Q ss_pred -CCcEEEeeCCCCHHHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-cc
Q psy12791 121 -IGLEVDFVDLRKIENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YY 188 (393)
Q Consensus 121 -~g~~v~~~~~~d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~ 188 (393)
....+..+|.+|.+.+++.++ +++.+|+++......|...| ++++.++|+++ |+++|+||++..+ -.
T Consensus 195 p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRt 273 (442)
T TIGR03372 195 PLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRT 273 (442)
T ss_pred CCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCcc
Confidence 112346667778877766663 35788999988888898888 99999999999 9999999999642 11
Q ss_pred c-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHHhcCC--CCCHHHHHHHHhccCCHHH--H
Q psy12791 189 Q-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSMGV--VPSPFDCWLVTRGLKTLPC--R 258 (393)
Q Consensus 189 ~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~ 258 (393)
. .......|+++ ++|.++ .| +.+|.++++ +++.+.+.......+. ..+|..++.+.+.++.+++ .
T Consensus 274 G~~~a~e~~gv~PDivt--~gK~lg--~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l 348 (442)
T TIGR03372 274 GKMFACEHEGVQPDILC--LAKALG--GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNL 348 (442)
T ss_pred ccchhhhhcCCCCCeee--ehhhhc--CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 1 11223468775 889995 35 358888887 7887766321111122 2357777666666654432 1
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCcc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
.++..+.-+++.+.|+++.. .+|. .+.+.++.|.++.+.+. +.+....+.+.+...++-+...
T Consensus 349 ~~~~~~~G~~l~~~L~~l~~----~~~~---------~i~~vRG~Gl~~giel~-~~~~~~~i~~~l~~~Gvl~~~~--- 411 (442)
T TIGR03372 349 PAQAAIKGDFLLDGFQQLAA----EYPD---------LIIEARGKGLLMAIEFR-DNEIGYAFAKELFQQNILVAGT--- 411 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCC---------ceEEEecceEEEEEEeC-ChHHHHHHHHHHHHCCcEEeec---
Confidence 33333334444444443210 0110 01122456788999994 4445566666665444333210
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.....+||++....++++++.+.++|++.
T Consensus 412 ----------------------~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 412 ----------------------LNNAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred ----------------------CCCCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 011468999999999999999999888764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=144.06 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh-cCCC--CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH
Q psy12791 61 RRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL-LSAG--DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134 (393)
Q Consensus 61 ~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~-~~~g--d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~ 134 (393)
..++++.+|+++|.+ +++.+..++++ . .++++. +++| |+|++++..|+++...+...++..|++++.++.++.+
T Consensus 150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~ 229 (993)
T PLN02414 150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD 229 (993)
T ss_pred HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc
Confidence 356788899999998 55666555554 5 344343 4444 7899999999998888888888999999999875422
Q ss_pred HHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc--cCCCCCcCcEEEEccccccc--CC
Q psy12791 135 NLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY--QKSLPWGVDIVLYSLTKYMN--GH 210 (393)
Q Consensus 135 ~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~--~~~~~~~~di~~~S~sK~~~--G~ 210 (393)
...+.+..+++.+|+ .+|.+.|+++|.++||++ |+++++ .++..... ..+-.+|+|+++++.+||.. |.
T Consensus 230 ----~~~~~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~-GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~ 302 (993)
T PLN02414 230 ----YSSGDVCGVLVQYPA-TDGEVLDYAEFVKNAHAN-GVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY 302 (993)
T ss_pred ----cccCceEEEEEecCC-CCeEEcCHHHHHHHHHHc-CCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence 122334445544554 689999999999999999 999999 55543222 13445799999999999972 22
Q ss_pred CCceEEEEEecChHHHHHH
Q psy12791 211 SDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 211 ~G~r~G~~~~~~~~~~~~~ 229 (393)
.|-+.|+++++ +++...+
T Consensus 303 GGP~aGflavr-~~~~r~~ 320 (993)
T PLN02414 303 GGPHAAFLATS-QEYKRLM 320 (993)
T ss_pred CCCCeeEEEEC-HHHHhhC
Confidence 22348999998 6665543
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=135.46 Aligned_cols=309 Identities=16% Similarity=0.107 Sum_probs=181.2
Q ss_pred CeeeeCCCCCCCCCccccC-CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hcC--CC-CeEEEcCCCc
Q psy12791 37 TTFKQNTPGQPPQGFEYSR-SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LLS--AG-DHIISGDDVY 107 (393)
Q Consensus 37 ~~~~~~~~~~~~~~~~y~~-~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~~--~g-d~vl~~~~~y 107 (393)
+.+.+++.+++.....+++ +.++...+|.++|++.... +...+.+||++|+ .++.. ... .| .+|+.....|
T Consensus 101 p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~y 180 (459)
T PRK11522 101 PVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAF 180 (459)
T ss_pred HHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCC
Confidence 3444444443332222222 3467778888989887643 2467778899987 44431 121 22 3688888888
Q ss_pred cchHHHHHHhccc---------CCcEEEeeCCCCHHHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHH
Q psy12791 108 GGTYRYFAQVAPK---------IGLEVDFVDLRKIENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAV 168 (393)
Q Consensus 108 ~~~~~~~~~~~~~---------~g~~v~~~~~~d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l 168 (393)
++........... ....+..+|..|.+++++.+. +++.+|+++..+...|.+.| ++++.++
T Consensus 181 HG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~l 260 (459)
T PRK11522 181 HGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKL 260 (459)
T ss_pred CCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHH
Confidence 7743221111100 011244566668888777764 34678999999888899887 9999999
Q ss_pred HHhCCCcEEEEeCccCcc-cc-----cCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHHhcCC--C
Q psy12791 169 VKQHPDILLVLDNTFLTA-YY-----QKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSMGV--V 239 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~-~~-----~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--~ 239 (393)
|+++ |+++|+||++..+ -. ........|++ +++|.++ .| +.+|.++++ +++.+.+.......+. .
T Consensus 261 c~~~-g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv--t~gK~lg--gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~ 334 (459)
T PRK11522 261 CDEF-GALLILDEVQTGMGRTGKMFACEHENVQPDIL--CLAKALG--GGVMPIGATIAT-EEVFSVLFDNPFLHTTTFG 334 (459)
T ss_pred HHHc-CCEEEeccceecCCccchhhhhhccCCCCCEE--Eechhhh--CCCccceeEEEc-HHHHHHhccCCcccCCCCC
Confidence 9999 9999999999642 11 11122346776 6789995 24 358888887 7777655311111122 2
Q ss_pred CCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH
Q psy12791 240 PSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE 317 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
.+|..+..+.+.++.++ ...++..+..+.+.+.|+++.. .+|. .+.+.++.|.++.+.+. +.+.
T Consensus 335 gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~---------~i~~VrG~Gl~~giel~-~~~~ 400 (459)
T PRK11522 335 GNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAR----EYPD---------LVQEARGKGMLMAIEFV-DNEI 400 (459)
T ss_pred CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----hCCC---------ceeeEEeceeEEEEEec-CchH
Confidence 36666666655554432 2344444555555555543210 0110 11122456788999984 4445
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+.+.+...++-+... +.....+|+.+....++++++.+.++|+++
T Consensus 401 ~~~i~~~l~~~Gvl~~~~-------------------------~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~ 448 (459)
T PRK11522 401 GYNFASEMFRQRVLVAGT-------------------------LNNAKTIRIEPPLTLTIEQCEQVLKAARKA 448 (459)
T ss_pred HHHHHHHHHHCCeEEEec-------------------------CCCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 556666655444333210 011478999999888888888777777654
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-13 Score=115.70 Aligned_cols=210 Identities=19% Similarity=0.233 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHHHhcCCCCeEEEcCC-CccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 60 TRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~-~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
...++++-+...+... .-++-++|..++ .++..++.|||.|++-.. .|+- .+...++++|++|..++.+
T Consensus 51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~---ra~D~~~r~ga~V~~v~~~~G~ 127 (385)
T KOG2862|consen 51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQ---RAADCARRYGAEVDVVEADIGQ 127 (385)
T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHH---HHHHHHHhhCceeeEEecCccc
Confidence 3456666666666654 356668888898 788889999999886554 4432 4677889999999998775
Q ss_pred --CHHHHHhhcCCC-CcEEEEecCCCCcccccC-HHHHHHHHHhCCCcEEEEeCccCccccc-CCCCCcCcEEEEccccc
Q psy12791 132 --KIENLIKYIKPN-TKMVWIENPTNPLMTVFD-VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIVLYSLTKY 206 (393)
Q Consensus 132 --d~~~l~~~l~~~-~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~livDea~~~~~~~-~~~~~~~di~~~S~sK~ 206 (393)
.++++.+++.++ +++|++++....||+..| ++.+.++|++| +++++||.+.+.+... ...+++.|+......|.
T Consensus 128 ~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~-~~lllVD~VaSlggt~F~mDewgVDvaytgSQKa 206 (385)
T KOG2862|consen 128 AVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKH-EALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKA 206 (385)
T ss_pred CccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcC-CeEEEEechhhcCCccceehhhcccEEEecchhh
Confidence 689999988764 899999999999999999 78889999999 9999999988754332 22347899999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHH--------------HhcCCC--------CCHHH------HHHHHhccCCHHHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQ--------------NSMGVV--------PSPFD------CWLVTRGLKTLPCR 258 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~--------------~~~~~~--------~~~~~------~~~~~~~~~~~~~~ 258 (393)
+++|+| ++.++.+ +...++++... .+|++. ..+.+ +++.+-..+.++.+
T Consensus 207 L~aP~G--LsiisfS-~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~ 283 (385)
T KOG2862|consen 207 LGAPAG--LSIISFS-DKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENS 283 (385)
T ss_pred cCCCCC--cceeecC-HHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5667776 66666665322 223332 11222 22222223456778
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy12791 259 LKEHERGSIEVAKFLESH 276 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~ 276 (393)
++++.+..+.+...|+.+
T Consensus 284 ~~rH~e~s~~l~~~l~~~ 301 (385)
T KOG2862|consen 284 WRRHREMSKWLKLSLEAL 301 (385)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888888777764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=141.28 Aligned_cols=286 Identities=16% Similarity=0.161 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeccHH-HH-HHHHH---Hh-cCCCC----eEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 61 RRNLERCIASLEEAKHGLCYSSGL-GA-VTAVT---HL-LSAGD----HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~~i~~~~G~-~a-l~~~~---~~-~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..++.+.+++++|.+..-+..+|+ ++ +..++ .+ .++|| +|++++..|+++ ...+...|++++.++.
T Consensus 544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~sn----p~sa~~~G~~vv~v~~ 619 (954)
T PRK05367 544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTN----PASAVMAGMKVVVVAC 619 (954)
T ss_pred HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhh----HHHHHHCCCEEEEECC
Confidence 457888899999998755555554 44 22222 21 34555 599999999763 3446778999999987
Q ss_pred C-----CHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc--ccCCCCCcCcEEE
Q psy12791 131 R-----KIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY--YQKSLPWGVDIVL 200 (393)
Q Consensus 131 ~-----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~--~~~~~~~~~di~~ 200 (393)
+ |+++|++.+++ ++.+|++++|++-.+...|+++|.++|+++ |+++++|.++.... ...+...|+|+++
T Consensus 620 d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~-G~~v~VDgA~~~al~~l~~pg~~GADi~~ 698 (954)
T PRK05367 620 DENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEH-GGQVYLDGANMNAQVGLARPGDIGADVSH 698 (954)
T ss_pred CCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHc-CCEEEEECcChhhccCCCChhhcCCCEEE
Confidence 5 78999998865 467888899998744457899999999999 99999999997432 2345567999999
Q ss_pred Eccccccc-----CCCCceEEEEEecChHHHHHHHHHHH---h----cCCCC-CHH-H------HH--HHHhccCCHHHH
Q psy12791 201 YSLTKYMN-----GHSDVVMGATVTNDDSLQARLKFLQN---S----MGVVP-SPF-D------CW--LVTRGLKTLPCR 258 (393)
Q Consensus 201 ~S~sK~~~-----G~~G~r~G~~~~~~~~~~~~~~~~~~---~----~~~~~-~~~-~------~~--~~~~~~~~~~~~ 258 (393)
.|.||+|+ |.|| +|++.++ +.+...+..... . .+... ++. + ++ +...+.+.+.+.
T Consensus 699 ~s~HK~f~~P~G~GGPg--~G~l~vr-~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~ 775 (954)
T PRK05367 699 LNLHKTFCIPHGGGGPG--VGPIGVK-AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQA 775 (954)
T ss_pred ecCcccCCCCcCCCCCc--eEEEeec-ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 99999974 5566 8898887 444443322110 0 01111 111 0 11 111122334444
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE-EEcC-CHHHHHHHHHhcCccccccccCC
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF-YVNG-GAEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
.+....++.++.+.|+.... +.+.+-....- ...++.+ .++. ....++.+.++|...++....
T Consensus 776 a~~~~~~A~Yl~~~L~~~~~---~~~~~~~~~~~----------~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t-- 840 (954)
T PRK05367 776 TEVAILNANYIAKRLKDHYP---VLYTGANGRVA----------HECILDLRPLKESTGITVDDIAKRLIDYGFHAPT-- 840 (954)
T ss_pred HHHHHHHHHHHHHHHHhhcC---ccccCCCCCcc----------cceEEEeecccccCCCCHHHHHHHHHHCCCeEee--
Confidence 45555677777777765322 22221000000 1234444 2221 011234555555433322110
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...| .++.+|++++..++.+++|+|.+++.++.
T Consensus 841 ----~~~p------------------v~~~l~i~ptE~~s~~elDr~~~al~~i~ 873 (954)
T PRK05367 841 ----MSFP------------------VAGTLMVEPTESESKAELDRFCDAMIAIR 873 (954)
T ss_pred ----cCCc------------------cCCEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence 0001 15789999999999999999999998765
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-13 Score=113.87 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=150.8
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH--HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV--TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al--~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
.|....+-+.||+|+|.+ ++=+|+|+-+- .++.+++++||.|++...+|.+++ -++++.|+++..+|..
T Consensus 60 kPpI~~F~~dlaeFlg~D-~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 60 KPPIKDFLEDLAEFLGMD-EVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred CCcHHHHHHHHHHHhCCc-eeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCc
Confidence 466778888899999985 45667887663 666788999999999999987653 3467889999999864
Q ss_pred ---CHHHHHhhcC-------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC-CCCCcCcEEE
Q psy12791 132 ---KIENLIKYIK-------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK-SLPWGVDIVL 200 (393)
Q Consensus 132 ---d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~~~~di~~ 200 (393)
+++...+.++ ..+.+.++++|....|.+.|.++++++|+++ |+++++..+|..+.... ....++|+++
T Consensus 135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~-gvPlllN~AYt~Grmpvs~ke~g~DFiV 213 (382)
T COG1103 135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREY-GVPLLLNCAYTVGRMPVSGKEIGADFIV 213 (382)
T ss_pred eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHc-CCceEeecceeeccccccccccCCCEEE
Confidence 4444444332 2378889999999999999999999999999 99999999999765432 2346899999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHH-H--------hcCCCCCHHHHHHHHhccCCHHHHHHHHH---HHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-N--------SMGVVPSPFDCWLVTRGLKTLPCRLKEHE---RGSIE 268 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 268 (393)
+|.||+++ ..| .+|.+..+ .++.+.+-+.. . ..|++.-......+.+++.....|..+.. ++++.
T Consensus 214 gSGHKsmA-As~-PiGvl~~~-eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~ 290 (382)
T COG1103 214 GSGHKSMA-ASA-PIGVLAMS-EEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARW 290 (382)
T ss_pred ecCccchh-ccC-CeeEEeeh-hHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999995 233 49999987 77777653322 1 23444322222233344444444544443 45566
Q ss_pred HHHHHhhCCCc
Q psy12791 269 VAKFLESHPCV 279 (393)
Q Consensus 269 l~~~l~~~~~~ 279 (393)
+.+-|+.+.++
T Consensus 291 fv~elEkigg~ 301 (382)
T COG1103 291 FVAELEKIGGV 301 (382)
T ss_pred HHHHHHHhhhH
Confidence 66666655544
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-13 Score=130.84 Aligned_cols=285 Identities=17% Similarity=0.142 Sum_probs=159.3
Q ss_pred CCchHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhccc-------CC-
Q psy12791 57 NNPTRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPK-------IG- 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-------~g- 122 (393)
.++...+|.+.|++..... ...+.+||++|+ .++. .......+|+.-..+|++.......+... ++
T Consensus 95 ~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 174 (451)
T PRK06918 95 MYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGP 174 (451)
T ss_pred ccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCC
Confidence 3567788999999887532 467778888886 4442 22233456888888887754322211110 01
Q ss_pred --cEEEeeCCCC-----------------HHHHHhhc----C-CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCC
Q psy12791 123 --LEVDFVDLRK-----------------IENLIKYI----K-PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPD 174 (393)
Q Consensus 123 --~~v~~~~~~d-----------------~~~l~~~l----~-~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~ 174 (393)
..+..+|..+ ++.+++.+ . +++.+|+++..+...|.+++ +++|.++|+++ |
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~-g 253 (451)
T PRK06918 175 FAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH-G 253 (451)
T ss_pred CCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc-C
Confidence 1122232210 11233222 2 35677887776666677665 88999999999 9
Q ss_pred cEEEEeCccCccccc-CCC---CCc--CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 175 ILLVLDNTFLTAYYQ-KSL---PWG--VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 175 ~~livDea~~~~~~~-~~~---~~~--~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
+++|+||+|..+... .+. .++ .|++ |++|.+ | +|+|+||++++ +++.+.+...........++..+..+
T Consensus 254 illI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l-~-~G~pig~v~~~-~~i~~~~~~~~~~~T~~g~~l~~aaa 328 (451)
T PRK06918 254 ILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSL-G-AGVPISGVIGR-KEIMDESAPGELGGTYAGSPLGCAAA 328 (451)
T ss_pred CEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhh-c-CCCccEEEEEc-HHHHhccCCCCcCcCCCcCHHHHHHH
Confidence 999999999875321 111 122 5644 799999 4 78999999997 78877664322222334466666654
Q ss_pred HhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc-------CCH
Q psy12791 249 TRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN-------GGA 315 (393)
Q Consensus 249 ~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 315 (393)
...++.+.. ..++..+..+.+.+.|+. ++.+..+ ++.|.++.+.+. ++.
T Consensus 329 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~v------------------rg~G~~~~~~~~~~~~~~~~~~ 390 (451)
T PRK06918 329 LAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDV------------------RGLGAMCAFELVQDRKTKEPDK 390 (451)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceee------------------ccceeEEEEEEccCCCcCCCcH
Confidence 444432211 112222222333333332 2221111 334666666552 123
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+....+.+.+...++.+..++. ..+.+|++++...++++++...++|.+.
T Consensus 391 ~~~~~l~~~~~~~Gvlv~~~~~-------------------------~~~~lrl~p~l~~t~~~id~~l~~l~~~ 440 (451)
T PRK06918 391 TLTANICKEANKRGLLLLSAGT-------------------------YGNVIRVLMPLVITDEQLEEGLTIIEES 440 (451)
T ss_pred HHHHHHHHHHHHCCeEEeecCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 4456666665554544433211 0368999998765566666555555443
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=132.03 Aligned_cols=213 Identities=18% Similarity=0.169 Sum_probs=135.7
Q ss_pred CCCchHHHHHHHHHHHh-CCCcEEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhc---------cc-C
Q psy12791 56 SNNPTRRNLERCIASLE-EAKHGLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVA---------PK-I 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~-~~~~~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~---------~~-~ 121 (393)
++.+...+|.++|++.. +.+...++++|++|+ .++... ...+++|+..++.|++......... .. .
T Consensus 87 ~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 166 (426)
T PRK00062 87 APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP 166 (426)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence 34567788999998876 344677778888887 555432 2346789999999988532221110 00 0
Q ss_pred Cc------EEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 122 GL------EVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 122 g~------~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
+. ....++..|++++++.+. +++++|+++.....+|.+.+ +++|.++|++| |+++|+||+|..+..
T Consensus 167 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~r~ 245 (426)
T PRK00062 167 GVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGFRV 245 (426)
T ss_pred CCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhcccc
Confidence 11 133445568888888774 35788899877777899998 89999999999 999999999985422
Q ss_pred cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH---HhcCCCCCHHHHHHHHhccCCHHH--H
Q psy12791 189 QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ---NSMGVVPSPFDCWLVTRGLKTLPC--R 258 (393)
Q Consensus 189 ~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~ 258 (393)
... .....|+ .+++|.+ | .|+++|+++++ +++.+.+.... .......++..+..+...++.+.. .
T Consensus 246 g~~~~~~~~~~~pDi--~~~gK~l-~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~ 320 (426)
T PRK00062 246 ALGGAQGYYGVTPDL--TTLGKII-G-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGF 320 (426)
T ss_pred CCccHHHHhCCCcch--HhhhhHh-h-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchH
Confidence 111 1122454 5789999 4 67889999887 78888774211 111223456666655555543322 3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12791 259 LKEHERGSIEVAKFLE 274 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~ 274 (393)
.++..+....+.+.|+
T Consensus 321 ~~~~~~~~~~~~~~l~ 336 (426)
T PRK00062 321 YEELEALTKRLAEGLK 336 (426)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555555554
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9e-14 Score=130.07 Aligned_cols=298 Identities=15% Similarity=0.085 Sum_probs=177.9
Q ss_pred CCCccC-CeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH-hcCCC-CeEEEcCC
Q psy12791 31 PPIILS-TTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH-LLSAG-DHIISGDD 105 (393)
Q Consensus 31 ~p~~~~-~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~-~~~~g-d~vl~~~~ 105 (393)
..++-. +.+.+++.+++... +....+.++...++.++++++.+.+..++.+||++|+ .++.. ...+| ++|+..+.
T Consensus 36 ~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~ 115 (364)
T PRK04013 36 NVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTN 115 (364)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 344333 44555544443322 1122356778889999999998777788899999997 55432 22234 78999999
Q ss_pred CccchHHHHHHhc----ccCC-----cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhC
Q psy12791 106 VYGGTYRYFAQVA----PKIG-----LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQH 172 (393)
Q Consensus 106 ~y~~~~~~~~~~~----~~~g-----~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~ 172 (393)
+|++......... ...+ ..+..++.+|++.+++.+.+++++|+++..+...|...+ +++|.++|+++
T Consensus 116 syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~ 195 (364)
T PRK04013 116 AFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDV 195 (364)
T ss_pred ccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc
Confidence 8887532211100 0011 234566677899999999888999999998877777664 99999999999
Q ss_pred CCcEEEEeCccCccccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 173 ~~~~livDea~~~~~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
|+++|+||++..+-.. .......|+++ ++|.++| |+.+|.++.+ .++.. .........+|..+..
T Consensus 196 -gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lgg--G~P~~a~~~~-~~~~~----~~~~~T~~gnp~~~aa 265 (364)
T PRK04013 196 -GALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGN--GVPVSLTLTN-FDVER----GKHGSTFGGNPLACKA 265 (364)
T ss_pred -CCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccC--CceeEEEEec-ccccC----CCcCCCCCcCHHHHHH
Confidence 9999999998853111 11223567775 5799953 6789998887 44411 1121222346777776
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
+.+.++.+++ +.+.++.+.. |+++.. + .+.+.+|.|.++.+++.. + ...+.+.+..
T Consensus 266 a~a~l~~i~~--~~l~~~~~~~---l~~l~~------~----------~v~~vRG~Gl~~gve~~~-~--~~~i~~~~~~ 321 (364)
T PRK04013 266 VAVTLRILRR--ERLVEKAGEK---FIEIKG------E----------RVVTTRGRGLMIGIVLKK-P--VGKYVEELQN 321 (364)
T ss_pred HHHHHHHHHh--ccHHHHHHHH---HHHhcc------C----------cceeeeeCcEEEEEEeCC-c--HHHHHHHHHh
Confidence 6666554432 2222332222 221100 1 112346678889999942 2 2344444333
Q ss_pred cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 328 ~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.++.... ...+.+|+.+.+.-++++++.+.+.|++
T Consensus 322 ~Gll~~~---------------------------~g~~vlr~~Ppl~it~~~i~~~~~~l~~ 356 (364)
T PRK04013 322 RGYLVHT---------------------------AGQRVIRLLPPLIISKDTMEEAKSAIEG 356 (364)
T ss_pred CCcEEee---------------------------CCCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 2322211 0136788888777666666666555554
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-13 Score=128.49 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=169.4
Q ss_pred CCCchHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc-------cCC
Q psy12791 56 SNNPTRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP-------KIG 122 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~-------~~g 122 (393)
+.++...+|.++|++..... ...+.+||++|+ .++.. ......+|+.....|++.......+.. .++
T Consensus 82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~ 161 (445)
T PRK08593 82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG 161 (445)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence 35677888999999987533 355568889886 54432 222345678778777764322111111 011
Q ss_pred ---cEEEeeCCCC-----------------HHHHHhhc-----CCCCcEEEEecCCCCcccccC----HHHHHHHHHhCC
Q psy12791 123 ---LEVDFVDLRK-----------------IENLIKYI-----KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHP 173 (393)
Q Consensus 123 ---~~v~~~~~~d-----------------~~~l~~~l-----~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~ 173 (393)
..+..+|..+ ++++++.+ .+++.+|+++..++..|.+.+ +++|.++|+++
T Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~- 240 (445)
T PRK08593 162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH- 240 (445)
T ss_pred CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-
Confidence 1233333221 13344333 246889999999988898876 99999999999
Q ss_pred CcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12791 174 DILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWL 247 (393)
Q Consensus 174 ~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
|+++|+||++..+ ... .......|++ +++|.++ .|+++|+++++ +++.+.+...........++..+..
T Consensus 241 g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~--~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aa 315 (445)
T PRK08593 241 GILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLA--GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAA 315 (445)
T ss_pred CCEEEEechhhCCCcCchHHHHHhcCCCCCEe--eeccccc--CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHH
Confidence 9999999999653 111 1112345766 6889994 46789999997 8888876422222233355666665
Q ss_pred HHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-------C
Q psy12791 248 VTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-------G 314 (393)
Q Consensus 248 ~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 314 (393)
+...++.+++ ..++..+..+.+.+.|++ ++.+. +.++.|.++.+.+.. +
T Consensus 316 a~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~------------------~vrG~Gl~~gi~l~~~~~~~~~~ 377 (445)
T PRK08593 316 ALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVG------------------DVRGYGLSIGIDIVSDKKLKTRD 377 (445)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEE------------------EEeccceEEEEEEecCCCcCCCc
Confidence 5555544322 334444444555555543 22222 224566777777632 1
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.+...++-+.. .....+|+++.+..++++++.+.+++++.
T Consensus 378 ~~~~~~~~~~~~~~Gv~~~~---------------------------~~~~~lr~~p~l~~t~~~id~~~~~l~~~ 426 (445)
T PRK08593 378 NEAALKICNYCFEHGVVIIA---------------------------VAGNVLRFQPPLVITYEQLDTALNTIEQA 426 (445)
T ss_pred HHHHHHHHHHHHHCCeEEec---------------------------cCCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 23344555554433322110 01368999999999999998888887754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=138.12 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHhCCCc-EEEeccHHHH-HHHHHHh---c-----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 61 RRNLERCIASLEEAKH-GLCYSSGLGA-VTAVTHL---L-----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~-~i~~~~G~~a-l~~~~~~---~-----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..++++.|+++.|.+. .+..++|+.+ +..+++. . ...++|+++.-.|++ ....++..|++++.++.
T Consensus 532 i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgt----nPasa~~~G~~Vv~V~~ 607 (939)
T TIGR00461 532 IAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGT----NPASAAMAGMQVVPVNC 607 (939)
T ss_pred HHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCc----CHHHHHHCCCEEEEecc
Confidence 4678899999999985 5566677765 3222221 1 124578899988875 34457788999999988
Q ss_pred C-----CHHHHHhhcCC---CCcEEEEecCCCCcccccC-HHHHHHHHHhCCCcEEEEeCccCccc--ccCCCCCcCcEE
Q psy12791 131 R-----KIENLIKYIKP---NTKMVWIENPTNPLMTVFD-VKAISAVVKQHPDILLVLDNTFLTAY--YQKSLPWGVDIV 199 (393)
Q Consensus 131 ~-----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~livDea~~~~~--~~~~~~~~~di~ 199 (393)
+ |+++|++.+++ ++++|++++|+| +|.+.+ +++|.++|+++ |.++++|.++.... ...|-..++|++
T Consensus 608 d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~-G~~v~VDgAq~~al~~l~~Pg~~GaDi~ 685 (939)
T TIGR00461 608 DQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSF-GGQVYLDGANMNAQVGLTSPGDLGADVC 685 (939)
T ss_pred CCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHc-CCEEEEEecChhhCCCCCCccccCCCEE
Confidence 5 89999999974 799999999999 788887 99999999999 99999999996522 234556799999
Q ss_pred EEccccccc-----CCCCceEEEEEecChHHHHHH
Q psy12791 200 LYSLTKYMN-----GHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 200 ~~S~sK~~~-----G~~G~r~G~~~~~~~~~~~~~ 229 (393)
++|.||+|+ |.|| +|++.++ +.+...+
T Consensus 686 ~~s~HKtf~~P~G~GGPg--~G~i~vr-~~L~~~l 717 (939)
T TIGR00461 686 HLNLHKTFCIPHGGGGPG--MGPIGVK-SHLIPFL 717 (939)
T ss_pred EecCCccCCCCCCCCCCC--eEEEEEh-hhchhhc
Confidence 999999887 6677 8999998 5554443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=137.40 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=125.8
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
++....+.++.+|+.+|++...+++||++. + .++++++++||+|+++..+|-+.+ +.+...|+..++++..
T Consensus 203 p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~----~al~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE----QGLILTGAKPVYMVPSRNR 278 (755)
T ss_pred CCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccc
Confidence 456778899999999999999999999886 7 778889999999999999998743 4567789999998642
Q ss_pred -------C-----HHHHHhhcCC--CCc--------EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 132 -------K-----IENLIKYIKP--NTK--------MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 132 -------d-----~~~l~~~l~~--~~~--------~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
+ ++.+++++.. .++ ++++++|+. -|.+.++++|.++|+++ +++|++|||++.....
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~-~~~llvDEAhGah~~F 356 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKT-SDRLHFDEAWYGYARF 356 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhc-CCeEEEECcccccccc
Confidence 2 7788887743 244 899999985 49999999999999999 9999999999873211
Q ss_pred -------CCC-----C-CcCc-EEEEcccccccCCCCceEEEEEec
Q psy12791 190 -------KSL-----P-WGVD-IVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 190 -------~~~-----~-~~~d-i~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
.++ . .|+| +++.|.||.++++.. ..++-.+
T Consensus 357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQ--aS~LHv~ 400 (755)
T PRK15029 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVR 400 (755)
T ss_pred CccccccccccccccccCCCceEEEEchhhcccchhh--hhhheeC
Confidence 223 2 5788 999999999865543 5555543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-13 Score=128.24 Aligned_cols=289 Identities=16% Similarity=0.111 Sum_probs=164.1
Q ss_pred CCchHHHHHHHHHHHhC----CCcEE-Ee-ccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhc------ccC
Q psy12791 57 NNPTRRNLERCIASLEE----AKHGL-CY-SSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVA------PKI 121 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~----~~~~i-~~-~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~------~~~ 121 (393)
.++...+|.++|++.+. ..+.+ ++ +||++|+ .++.. ......+|+.....|++......... ...
T Consensus 80 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 159 (425)
T PRK09264 80 HTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGA 159 (425)
T ss_pred CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCC
Confidence 35667778888888642 22234 44 5999987 44432 23334578888888877432211110 011
Q ss_pred C---cEEEeeCC--------CCHHHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEe
Q psy12791 122 G---LEVDFVDL--------RKIENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 122 g---~~v~~~~~--------~d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livD 180 (393)
+ ..+..+|. +|++++++.+. +++.+|+++......|.+.+ +++|.++|++| |+++|+|
T Consensus 160 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~D 238 (425)
T PRK09264 160 GVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKH-DILLIVD 238 (425)
T ss_pred CCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEe
Confidence 1 13445554 25677777774 24678999988888887653 99999999999 9999999
Q ss_pred CccCccc------ccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC
Q psy12791 181 NTFLTAY------YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 181 ea~~~~~------~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
|++..+. .........|++ +++|.+ |..|+++|+++++ +++ ..+...........++..+..+...++.
T Consensus 239 EV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l-~~~G~pigav~~~-~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~ 313 (425)
T PRK09264 239 DIQAGCGRTGTFFSFERAGITPDIV--TLSKSI-SGYGLPMALVLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEE 313 (425)
T ss_pred chhhCCccccHHHHHhhcCCCCCEE--Eecccc-CCCccceEEEEEc-hhh-hccCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 9997421 111122356765 568999 5668999999998 555 3332111111112334444444333311
Q ss_pred -HH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccc
Q psy12791 255 -LP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCA 331 (393)
Q Consensus 255 -~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (393)
+. ...++..++...+.+.|+.+.. .+|.. ..+.++.|.++++.+. +.+....+.+.+...++.
T Consensus 314 ~~~~~~l~~~~~~~g~~l~~~l~~l~~----~~~~~---------~~~vrg~Gl~~~i~l~-~~~~~~~l~~~~~~~Gv~ 379 (425)
T PRK09264 314 YWSDDAFEKEVKAKGELVRERLEEIAA----KYPGL---------GAEVRGRGMMQGIDFG-DGELAGKIAAEAFENGLI 379 (425)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH----hCCCc---------eecceecccEEEEEec-ChHHHHHHHHHHHHCCCE
Confidence 11 1233444444555555543210 01110 0112345677899994 555566676666544433
Q ss_pred cccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 332 ESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 332 ~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+...+ .....||+++.+..++++++.+.+.|.+.
T Consensus 380 ~~~~~-------------------------~~~~~lr~~p~l~~t~~ei~~~~~~l~~~ 413 (425)
T PRK09264 380 IETSG-------------------------PEDEVVKLLPPLTIDEEELEEGLDILEEA 413 (425)
T ss_pred EeccC-------------------------CCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32111 11468999988888877777666666543
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=136.74 Aligned_cols=236 Identities=21% Similarity=0.183 Sum_probs=157.2
Q ss_pred cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH
Q psy12791 35 LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY 113 (393)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~ 113 (393)
+.+...+++.........|+ .++...+|++.+++++|.+..+++.+|+.+. .++..+++|++.|++.++.|-..+ +
T Consensus 7 ~~~~m~~a~~~a~~gd~~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~-E 83 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDDAYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFD-E 83 (290)
T ss_dssp S-HHEEHHHHHTTSB-CCTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHS-S
T ss_pred CCHHHHHHHHccccCCcccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeee-c
Confidence 44455555533221112355 3789999999999999999999999999996 778888899999999988764211 1
Q ss_pred HHHhcccCCcEEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEE
Q psy12791 114 FAQVAPKIGLEVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLV 178 (393)
Q Consensus 114 ~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~li 178 (393)
-.......|.+++.++.. +++++++.+.+ ++++|++++|+|.. |.+++ +++|.++|+++ |+.++
T Consensus 84 ~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~-gl~lh 162 (290)
T PF01212_consen 84 TGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREH-GLPLH 162 (290)
T ss_dssp TTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHH-T-EEE
T ss_pred cchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhC-ceEEE
Confidence 112224578999888764 68888888753 47899999999874 77776 66778889999 99999
Q ss_pred EeCccCcccc---c---CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC---HHHH----
Q psy12791 179 LDNTFLTAYY---Q---KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS---PFDC---- 245 (393)
Q Consensus 179 vDea~~~~~~---~---~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---- 245 (393)
+|.+-..... . ..+..++|++..|++|.+ |.++ .+.++++ +++++.....+...|..+. ...+
T Consensus 163 mDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~-g~~~--Gavl~~~-~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~ 238 (290)
T PF01212_consen 163 MDGARLANAAAALGVSLAEIAAGADSVSFGGTKNG-GAPG--GAVLAGN-KEFIAKARRQRKRLGGGMRQAGVLAAAELY 238 (290)
T ss_dssp EEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT--SSS--EEEEEES-HHHHHHHHHHHHHHTHHHHHTTHHHHHHHH
T ss_pred EehhhHHHhhhcccccHHHHhhhCCEEEEEEEccc-cccc--ceEEEec-hHHHHHHHHHHHHhccCeeecceeeeechh
Confidence 9998653111 1 112247899999999998 5665 7777776 7766655444443333211 1111
Q ss_pred -HHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 246 -WLVTRGLKTLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
......++....+..+..++++++.+.|+..+.
T Consensus 239 ~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~ 272 (290)
T PF01212_consen 239 QFAALRALELWLERARHANAMAKRLAAGLEALGG 272 (290)
T ss_dssp HHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECE
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 133444455455666677788888888886554
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=125.24 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=149.4
Q ss_pred chHHHHHHHHHHHh---CC---C-cEEEeccHHHHH-HH-HHHhcCC------CCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 59 PTRRNLERCIASLE---EA---K-HGLCYSSGLGAV-TA-VTHLLSA------GDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 59 ~~~~~lr~~la~~~---~~---~-~~i~~~~G~~al-~~-~~~~~~~------gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
-...+|++.|-+++ |- + .-|++++|++.+ .+ +.++... --.|+...|.|+. |+....-+.-
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~----Y~~qt~~f~s 118 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSS----YPEQTDFFDS 118 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CH----HHHHCCCT-B
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccc----hHHHHHhccc
Confidence 34566777777664 32 2 589999999985 44 4444211 1368999999983 6655443322
Q ss_pred EEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC--CcCcEEEE
Q psy12791 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP--WGVDIVLY 201 (393)
Q Consensus 124 ~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~--~~~di~~~ 201 (393)
....+.- |...+...-.+.+-+=++++||||.|.+- + .+++.. +..+|.|-+|-.+++ .|+. .+-||+++
T Consensus 119 ~~y~w~G-da~~~~~~~~~~~~IElVTSPNNPDG~lr--~---~V~~g~-~~k~I~D~AYYWPhy-TpI~~~aD~DiMLF 190 (363)
T PF04864_consen 119 RLYKWAG-DASNFKNSDNPSPYIELVTSPNNPDGQLR--E---AVLNGS-SGKVIHDLAYYWPHY-TPITAPADHDIMLF 190 (363)
T ss_dssp TTEEEEE-ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTT-EEEEEEE-TT-STTT-S---S-B--SEEEE
T ss_pred cCccccc-cHHhhccCCCCCCeEEEEeCCCCCccccc--c---hhcCCC-Ccceeeeeeeecccc-cccCCCCCCceEEE
Confidence 2111111 21122111112345667799999999864 1 223334 667899999998775 3443 45689999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--------------HHHHHHHHHH
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--------------RLKEHERGSI 267 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 267 (393)
|+||.- |++|-|+||.+.+++++.+++..........++-..+.-+++.++.+.. ..+...++-+
T Consensus 191 T~SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~ 269 (363)
T PF04864_consen 191 TLSKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWE 269 (363)
T ss_dssp EHHHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHH
T ss_pred EEeccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHH
Confidence 999998 8999999999999999999887666555555666655544444432211 1222233444
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
+|.+.+.... ++..+.++. .......+.....+.+.|+.... ..++...++++.++.+......
T Consensus 270 ~L~~~~~~S~---rFSLq~~~~-~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~G~~f----------- 334 (363)
T PF04864_consen 270 KLRAAVSASK---RFSLQKFSP-QYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRSGVLF----------- 334 (363)
T ss_dssp HHHHHHCCSS---SEEE---SC-EEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEEGGGG-----------
T ss_pred HHHHHHHhcC---ceecCcCCc-hhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCCCCcc-----------
Confidence 5555554322 234444321 11222223333346788999852 2346777877766654333222
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
|....++|||+ -.+++..+.|.+-|+++
T Consensus 335 --------------ga~~ryVRlSm--l~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 335 --------------GADSRYVRLSM--LKRDDDFDQLLERLSKL 362 (363)
T ss_dssp --------------TS-TTEEEEES--SS-HHHHHHHHHHHHCC
T ss_pred --------------CCCCCeEEEec--cCCHHHHHHHHHHHHhh
Confidence 23478999998 55666666666655543
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=125.95 Aligned_cols=286 Identities=15% Similarity=0.102 Sum_probs=169.7
Q ss_pred CCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcc-----cCC---
Q psy12791 57 NNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAP-----KIG--- 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~~g--- 122 (393)
+++...++.+.|++.... +...+.+||++|+ .++. ......++|+....+|++.......+.. ..+
T Consensus 97 ~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~ 176 (443)
T PRK06058 97 PYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGP 176 (443)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCC
Confidence 456667888888887642 2577889998887 4443 1223447899889988875422221110 011
Q ss_pred --cEEEeeCC----CC---------------HHHHHhhcC-CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcE
Q psy12791 123 --LEVDFVDL----RK---------------IENLIKYIK-PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDIL 176 (393)
Q Consensus 123 --~~v~~~~~----~d---------------~~~l~~~l~-~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~ 176 (393)
-.+..++. ++ ++.+++.+. +++.+|+++..+...|.+.| +++|.++|++| |++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~-gil 255 (443)
T PRK06058 177 FAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCREN-GVV 255 (443)
T ss_pred CCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCE
Confidence 11222221 11 223334443 45778888766666676665 99999999999 999
Q ss_pred EEEeCccCcccc-c-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 177 LVLDNTFLTAYY-Q-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 177 livDea~~~~~~-~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
+|+||++..+.. . .......|+++ ++|.++ .|+++|+++++ +++.+.+...........++..+..+.+
T Consensus 256 lI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK~l~--~G~Pi~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a 330 (443)
T PRK06058 256 FIADEVQTGFARTGAWFACEHEGIVPDLIT--TAKGIA--GGLPLSAVTGR-AEIMDAPHPGGLGGTYGGNPVACAAALA 330 (443)
T ss_pred EEEeccccCCCcChhhhHHHhcCCCCCEEE--Eccccc--CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHH
Confidence 999999986421 1 11123467775 569994 57899999997 7887766432222222346777766666
Q ss_pred ccCCHHH--HHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC------CHHHH
Q psy12791 251 GLKTLPC--RLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG------GAEET 318 (393)
Q Consensus 251 ~~~~~~~--~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 318 (393)
.++.+.+ ..++..+....+.+.|+++ +.+. +.++.|.++.+.+.. +.+..
T Consensus 331 ~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrg~G~~~~i~~~~~~~~~~~~~~~ 392 (443)
T PRK06058 331 AIETIEEDDLVARARQIEALMTDRLRALAAEDDRIG------------------DVRGRGAMIAIELVKPGTTEPDAELT 392 (443)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEE------------------eeeccceEEEEEEecCCCCCCcHHHH
Confidence 6654322 2333334444555555432 2211 124567787787732 12345
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+++.+...++.+..++. ..+.||+.+.+..++++++.+.++|++..
T Consensus 393 ~~l~~~~~~~Gv~~~~~~~-------------------------~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 393 KALAAAAHAAGVIVLTCGT-------------------------YGNVIRLLPPLVIGDELLREGLDVLEAAL 440 (443)
T ss_pred HHHHHHHHHCCeEEeccCC-------------------------CCCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 5566555444443322111 13689999999999888888888877653
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-13 Score=128.90 Aligned_cols=287 Identities=16% Similarity=0.154 Sum_probs=180.6
Q ss_pred CchHHHHHHH----HHHHhCCCc---------EEEeccHHHHH-HHHHHh----cC-------CCCeEEEcCCCccchHH
Q psy12791 58 NPTRRNLERC----IASLEEAKH---------GLCYSSGLGAV-TAVTHL----LS-------AGDHIISGDDVYGGTYR 112 (393)
Q Consensus 58 ~~~~~~lr~~----la~~~~~~~---------~i~~~~G~~al-~~~~~~----~~-------~gd~vl~~~~~y~~~~~ 112 (393)
.|...++++. +++++|.++ .+++++|+++. .++.+. .+ +.-.|.+++.+|.+
T Consensus 165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~S--- 241 (539)
T PLN02590 165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSS--- 241 (539)
T ss_pred CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHH---
Confidence 4555555555 566677663 46677777774 443321 11 11144567777774
Q ss_pred HHHHhcccCCc---EEEeeCCC-------CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHHHhCCCcE
Q psy12791 113 YFAQVAPKIGL---EVDFVDLR-------KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176 (393)
Q Consensus 113 ~~~~~~~~~g~---~v~~~~~~-------d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 176 (393)
+.++++..|+ .++.+|.+ |+++|++++.++ +-+|+.+..+..||.+-|+++|.++|+++ ++|
T Consensus 242 -v~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~-g~W 319 (539)
T PLN02590 242 -FRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY-GIW 319 (539)
T ss_pred -HHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh-CCe
Confidence 6788888887 46666654 788998888542 44666688899999999999999999999 999
Q ss_pred EEEeCccCcccccCCC----C---CcCcEEEEcccccccCCCCceEEEEEecChH-HHHHHHHHHHhc------------
Q psy12791 177 LVLDNTFLTAYYQKSL----P---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-LQARLKFLQNSM------------ 236 (393)
Q Consensus 177 livDea~~~~~~~~~~----~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~~~~~~~~~~~~------------ 236 (393)
++||.||+.+....+. . ..+|-+..++|||+.-+.+ .|.+..+++. +.+.+.....+.
T Consensus 320 lHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d 397 (539)
T PLN02590 320 LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN 397 (539)
T ss_pred EEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCC
Confidence 9999999986532221 1 2479999999999853443 8888887653 333332111111
Q ss_pred --------CCCCCHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 237 --------GVVPSPFDCWLVTRG--LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 237 --------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
+-....+..|+.++. .+.+..++++..+.++.+.+.+++.+.++-+..|. -++
T Consensus 398 ~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~-----------------l~i 460 (539)
T PLN02590 398 YKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-----------------FSL 460 (539)
T ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-----------------eEE
Confidence 001112233444333 35577788888899999999999888766443333 256
Q ss_pred EEEEEcC---C----HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec-CCChHH
Q psy12791 307 LSFYVNG---G----AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG-VEGYTD 378 (393)
Q Consensus 307 ~~~~~~~---~----~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~ 378 (393)
+.|+..+ + .+.+.++++++..-+...-. +. .+ ...-+||+++. ..++++
T Consensus 461 VcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs---------~t-----~~---------~g~~~lR~~i~n~~T~~~ 517 (539)
T PLN02590 461 VCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFIS---------HT-----AL---------SGKFVLRFAVGAPLTEEK 517 (539)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEE---------ee-----EE---------CCEEEEEEEecCCCCCHH
Confidence 7777643 2 23345666665432222110 00 00 01358999996 557788
Q ss_pred HHHHHHHHHHHhh
Q psy12791 379 LIADLDQALRKAC 391 (393)
Q Consensus 379 ~i~~l~~al~~~~ 391 (393)
+++.+.+.+.+.+
T Consensus 518 dv~~~~~~i~~~a 530 (539)
T PLN02590 518 HVTEAWQIIQKHA 530 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776643
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=122.16 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=162.8
Q ss_pred HHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHh--cccCC--cEEEeeCCC------
Q psy12791 64 LERCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQV--APKIG--LEVDFVDLR------ 131 (393)
Q Consensus 64 lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~--~~~~g--~~v~~~~~~------ 131 (393)
..+...+++|++ ..+-..||++|. .+..++++|||+|+..+..+++.. ... ....| .+++.++.+
T Consensus 77 aierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHl---tHg~~v~~sG~~~~~v~Y~vd~et~~I 153 (413)
T COG0112 77 AIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHL---THGSPVNFSGKLFNVVSYGVDPETGLI 153 (413)
T ss_pred HHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcc---cCCCCCCccceeEEeEecccccccCcc
Confidence 345556689998 588899999996 888999999999998888776521 111 11112 456666654
Q ss_pred CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEEEEcccc
Q psy12791 132 KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIVLYSLTK 205 (393)
Q Consensus 132 d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~~~S~sK 205 (393)
|.|++++...+ ++|+|+.-....| ...|.+++.++|++. |++|++|.++..+ .+++|+.. +|+++.|.||
T Consensus 154 DyD~~~k~a~e~kPK~ii~G~SaY~--r~id~~~~reIad~V-GA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHK 229 (413)
T COG0112 154 DYDEVEKLAKEVKPKLIIAGGSAYS--RPIDFKRFREIADEV-GAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHK 229 (413)
T ss_pred CHHHHHHHHHHhCCCEEEECccccc--cccCHHHHHHHHHHh-CceEEehHHHHHHHHhcccCCCCCCc-cceEeCCccc
Confidence 78888887654 6899998554444 577999999999999 9999999999874 45577776 9999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH------Hhcc-CCHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV------TRGL-KTLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
++.|| |+|.+.++++++.+++..... .|....|....++ .+.+ ..+....++..+|++.|++.|.+..
T Consensus 230 TlrGP---rGG~Il~~~eel~kkin~aVF-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G- 304 (413)
T COG0112 230 TLRGP---RGGIILTNDEELAKKINSAVF-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERG- 304 (413)
T ss_pred CCCCC---CceEEEeccHHHHHHhhhhcC-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 99665 799999987789998875433 2333334332222 1222 2346667778899999999998743
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc--C-CHHHHHHHHHhcCc
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN--G-GAEETRIFLESLLI 327 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~ 327 (393)
..-+ .+... ..++-+.+. + +-..++..+++..+
T Consensus 305 ~~vv--sGgTd--------------nHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 305 FKVV--SGGTD--------------NHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred CeEe--cCCcc--------------ceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 2211 22111 245555554 1 45677777777654
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-13 Score=127.35 Aligned_cols=288 Identities=17% Similarity=0.087 Sum_probs=162.6
Q ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhc-----ccCC-
Q psy12791 55 RSNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVA-----PKIG- 122 (393)
Q Consensus 55 ~~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~-----~~~g- 122 (393)
.++++...+|.+.|++.... +...+.+||++|+ .++.. ......+|+.-...|++.......+. ...+
T Consensus 79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 158 (425)
T PRK07495 79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF 158 (425)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence 34567778889999887753 2467778889887 44432 22334578887888876432111110 0111
Q ss_pred ----cEEEeeCCCC----------HHHHHhhcC-----CCCcEEEEecCCCCccccc-C---HHHHHHHHHhCCCcEEEE
Q psy12791 123 ----LEVDFVDLRK----------IENLIKYIK-----PNTKMVWIENPTNPLMTVF-D---VKAISAVVKQHPDILLVL 179 (393)
Q Consensus 123 ----~~v~~~~~~d----------~~~l~~~l~-----~~~~~v~l~~p~nptG~~~-~---~~~l~~l~~~~~~~~liv 179 (393)
..+..+|..+ ++++++.+. ++.++|+++..+..+|... | +++|.++|++| |+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~-g~llI~ 237 (425)
T PRK07495 159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQH-GILLIA 237 (425)
T ss_pred CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEE
Confidence 1234444432 444555542 3578888877666678554 3 88999999999 999999
Q ss_pred eCccCccccc-CC--C-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH
Q psy12791 180 DNTFLTAYYQ-KS--L-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL 255 (393)
Q Consensus 180 Dea~~~~~~~-~~--~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
||+|..+... .. . ..+...-+.+++|.++ .|+++|+++++ +++.+.+...........++..+..+...++.+
T Consensus 238 DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~--~G~pigav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l 314 (425)
T PRK07495 238 DEVQTGFARTGKLFAMEHHEVAADLTTMAKGLA--GGFPLAAVTGR-AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVI 314 (425)
T ss_pred echhhcCCcCCCceeecccCCCCCEEeehhhhc--CCccceEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999853211 11 1 1233333567899994 57899999997 788776643222222334666666555544433
Q ss_pred HH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC------HHHHHHHHH
Q psy12791 256 PC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG------AEETRIFLE 323 (393)
Q Consensus 256 ~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 323 (393)
.. ..++..+..+.+.+.|+. +|.+.. .++.|.++++.+.++ .+....+.+
T Consensus 315 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~ 376 (425)
T PRK07495 315 EEEDLCERANQLGNRLKQRLASLRETVPEIAD------------------IRGPGFMNAVEFNDADSGLPSAEFANRVRL 376 (425)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhhCCCeee------------------eecCceEEEEEEecCCCCCccHHHHHHHHH
Confidence 21 223333334444444432 222221 244577889988421 122344544
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.+...++-+... |...+.|||.+.+.-++++++.+.++|++
T Consensus 377 ~~~~~Gvl~~~~-------------------------g~~~~~~r~~Ppl~it~~~id~~~~~l~~ 417 (425)
T PRK07495 377 KALEKGLILLTC-------------------------GVHGNVIRFLAPITIQDDVFAEALDILEA 417 (425)
T ss_pred HHHHCCeEEeec-------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence 443333222110 11146788887777666666655555543
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-12 Score=120.71 Aligned_cols=323 Identities=15% Similarity=0.085 Sum_probs=189.1
Q ss_pred CCCCC-CC--CCCCC-ccCCeeeeCCCCCCCCCc-cccCC-CCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QC--VIPPI-ILSTTFKQNTPGQPPQGF-EYSRS-NNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~--~~~p~-~~~~~~~~~~~~~~~~~~-~y~~~-~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~ 91 (393)
..++| .+ +...+ +..|.+.+++.+++.... .-.++ ..+.+.++.++|.+.... +.+.+.+||++|+ .++.
T Consensus 56 ~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiK 135 (447)
T COG0160 56 NEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIK 135 (447)
T ss_pred CEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHH
Confidence 45566 22 33333 344556655544332222 11222 226677788888887654 3588889999997 5542
Q ss_pred --HhcCCCCeEEEcCCCccchHHHHHHhc-----cc-----CCcEEEeeCCC----C-------------HHHHHhhcC-
Q psy12791 92 --HLLSAGDHIISGDDVYGGTYRYFAQVA-----PK-----IGLEVDFVDLR----K-------------IENLIKYIK- 141 (393)
Q Consensus 92 --~~~~~gd~vl~~~~~y~~~~~~~~~~~-----~~-----~g~~v~~~~~~----d-------------~~~l~~~l~- 141 (393)
.....+..|+.....|++.....-.+. +. ....+..+|.. + .+.++..+.
T Consensus 136 iAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~ 215 (447)
T COG0160 136 IARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD 215 (447)
T ss_pred HHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHh
Confidence 233445678888888876432211111 11 11225555543 1 223444232
Q ss_pred -----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc------ccCCCCCcCcEEEEccccc
Q psy12791 142 -----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY------YQKSLPWGVDIVLYSLTKY 206 (393)
Q Consensus 142 -----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~------~~~~~~~~~di~~~S~sK~ 206 (393)
.++.+++++..+...|.+.+ ++++.++|++| |+++|+||+|..+- .........||++ ++|.
T Consensus 216 ~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ 292 (447)
T COG0160 216 LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKS 292 (447)
T ss_pred hcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccccchhhhhcCCCCCEEE--eccc
Confidence 24789999999999999997 88999999999 99999999998731 1112223578885 7799
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeC
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLH 284 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~ 284 (393)
++ - |+.+|.++.+ +++.+ ...-........+|..++.+...++.+++ ..++..+.-+++.+.|.++.. .+
T Consensus 293 ig-~-G~Pl~avv~r-~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~----~~ 364 (447)
T COG0160 293 LG-G-GLPLSAVVGR-AEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQE----KH 364 (447)
T ss_pred cc-C-CCceeEEecc-HHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHh----hc
Confidence 95 3 8889999998 77776 32211111233466666666665554332 233333333444444433211 11
Q ss_pred CCCCCCcchHHHhhhcCCCcceEEEEEc-------CCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 285 PGLPSHPNHELAKSQWSGTSGMLSFYVN-------GGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
| .+-+.+|.|.|+-+++. .+.+..+++++++...++.+..+
T Consensus 365 ~----------~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~---------------------- 412 (447)
T COG0160 365 P----------LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC---------------------- 412 (447)
T ss_pred C----------ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc----------------------
Confidence 1 12233667788888875 23467777777766555433222
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
|...+.|||..-..-++++++...++|.+.
T Consensus 413 ---G~~~nviRi~PPL~is~e~~d~~l~il~~a 442 (447)
T COG0160 413 ---GPHGNVLRILPPLTISDEELDEGLDILEEA 442 (447)
T ss_pred ---CCCCcEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 222678898887777777777776666644
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-13 Score=132.90 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhCCCcE-EEeccHHHH-HHHHHHh----cC----CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 61 RRNLERCIASLEEAKHG-LCYSSGLGA-VTAVTHL----LS----AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~~-i~~~~G~~a-l~~~~~~----~~----~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..++++.++++.|.+.. +.-++|+.+ +..++++ .. ..++|+++.-.|+++ ...+...|++++.++.
T Consensus 545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN----pasa~~~GieVv~Vp~ 620 (954)
T PRK12566 545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN----PASAQMAGMRVVIVEC 620 (954)
T ss_pred HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC----HHHHHHCCCEEEEecc
Confidence 46789999999999854 444577776 3333332 21 235788988888653 2336678999999988
Q ss_pred C-----CHHHHHhhcC---CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc--cCCCCCcCcEEE
Q psy12791 131 R-----KIENLIKYIK---PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY--QKSLPWGVDIVL 200 (393)
Q Consensus 131 ~-----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~--~~~~~~~~di~~ 200 (393)
+ |+++|++.++ +++++|.+++|++-.+...++++|.++++++ |+++++|.++..... ..|.+.|+|+++
T Consensus 621 D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~-Galv~vDgA~~~a~~~l~~Pg~~GADi~~ 699 (954)
T PRK12566 621 DPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQH-GGQVYMDGANLNAQVGLARPADIGADVSH 699 (954)
T ss_pred CCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHc-CCEEEEEeeChhhccCCCChhhcCCCEEE
Confidence 5 8999999987 5788889999998887777799999999999 999999999975332 234568999999
Q ss_pred EcccccccCCCC---ceEEEEEecChHHHHHHH
Q psy12791 201 YSLTKYMNGHSD---VVMGATVTNDDSLQARLK 230 (393)
Q Consensus 201 ~S~sK~~~G~~G---~r~G~~~~~~~~~~~~~~ 230 (393)
++++|+|++|.| .-+|.+.+. +.+...++
T Consensus 700 ~s~HKtf~~P~G~GGP~vG~iav~-~~L~pfLp 731 (954)
T PRK12566 700 MNLHKTFCIPHGGGGPGMGPIGVR-AHLAPFVA 731 (954)
T ss_pred ecCCcccCcCccCCCCccchhhhh-hhhhhhcc
Confidence 999999964433 224554544 44444444
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-13 Score=123.85 Aligned_cols=240 Identities=19% Similarity=0.170 Sum_probs=144.4
Q ss_pred HHHHHHHHhCCC----c-EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH-HHHhc-----ccCCcEEEeeCCC
Q psy12791 64 LERCIASLEEAK----H-GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY-FAQVA-----PKIGLEVDFVDLR 131 (393)
Q Consensus 64 lr~~la~~~~~~----~-~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~-~~~~~-----~~~g~~v~~~~~~ 131 (393)
.++.+.++++++ . .+=.-||+.|. .++.++++|||+|+..+..+++.... +..-. .....+++.++++
T Consensus 71 a~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d 150 (399)
T PF00464_consen 71 AIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD 150 (399)
T ss_dssp HHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-
T ss_pred HHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee
Confidence 445566688887 4 66678999996 88889999999999988877542100 00000 1112456565544
Q ss_pred ------CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEE
Q psy12791 132 ------KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIV 199 (393)
Q Consensus 132 ------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~ 199 (393)
|.+++++.+.+ ++++|++..-+.| ..+|.+++.++|++. |++|++|.++..+ .+.+|+.. +|++
T Consensus 151 ~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~v-ga~l~~D~sH~~GLIa~g~~~~P~~~-ADvv 226 (399)
T PF00464_consen 151 PDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEV-GAYLMADISHIAGLIAGGLFPNPFPY-ADVV 226 (399)
T ss_dssp TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHT-T-EEEEE-TTTHHHHHTTSS--GCCT-SSEE
T ss_pred cCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhc-CcEEEecccccccceehheecCcccc-ceEE
Confidence 78888887654 6899999766655 467899999999999 9999999999874 44577776 9999
Q ss_pred EEcccccccCCCCceEEEEEec-------------ChHHHHHHHHHHHhc--CCCCCHHHHHHH---HhccC-CHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTN-------------DDSLQARLKFLQNSM--GVVPSPFDCWLV---TRGLK-TLPCRLK 260 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~-~~~~~~~ 260 (393)
++|.||.|.|| |.|.++++ ++++.+++.....+. ++.....-+.++ ..... ......+
T Consensus 227 t~sThKtl~GP---rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~ 303 (399)
T PF00464_consen 227 TGSTHKTLRGP---RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAK 303 (399)
T ss_dssp EEESSGGG-SS---S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred Eeecccccccc---CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHH
Confidence 99999999766 68999998 578988887554322 111111111111 11122 2456777
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
+..+|++.|++.|.+... . +.. +. .-..++++.+.. +..+++..+++..+
T Consensus 304 qVv~NAk~La~~L~~~G~-~-v~~-gg--------------Td~H~vlvd~~~~~~~g~~a~~~Le~~gI 356 (399)
T PF00464_consen 304 QVVKNAKALAEALQERGF-K-VVT-GG--------------TDNHQVLVDLRSFGIDGKEAEKALEEAGI 356 (399)
T ss_dssp HHHHHHHHHHHHHHHTT--E-EGG-GS---------------SSSEEEEEGGGGTS-HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHhhCCc-E-EEE-CC--------------CCCCeEEEEecccccchHHHHHHHHhcCe
Confidence 888999999999987532 1 211 10 113567887742 44677777777665
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-12 Score=113.44 Aligned_cols=250 Identities=15% Similarity=0.126 Sum_probs=160.9
Q ss_pred CCchHHHHHHHHHHH-hCCC---------cEEEeccHHHHH-HHH--HHhcCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 57 NNPTRRNLERCIASL-EEAK---------HGLCYSSGLGAV-TAV--THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~-~~~~---------~~i~~~~G~~al-~~~--~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
|-.+.....+.++++ +|.+ ..+-..+|+-|+ .+. .+...+...|.+++|+|+. +..++...|.
T Consensus 67 ~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~N----H~~If~~aGl 142 (396)
T COG1448 67 PIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPN----HKAIFEAAGL 142 (396)
T ss_pred CcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHh----HHHHHHhcCC
Confidence 345677788888886 4532 245567777787 332 3334566779999999984 6777888999
Q ss_pred EEEeeCCC-------CHHHHHhhcCC--CCcEEEE-ecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 EVDFVDLR-------KIENLIKYIKP--NTKMVWI-ENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 ~v~~~~~~-------d~~~l~~~l~~--~~~~v~l-~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
++..+|.- |.+.+.+.+.. ...+|++ ...|||||.-++ +++|.++.++. +.+.++|-||..+-...
T Consensus 143 ~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~Gl 221 (396)
T COG1448 143 EVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADGL 221 (396)
T ss_pred ceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccch
Confidence 99988863 56666665542 3345555 577999999997 77899999999 99999999998754321
Q ss_pred CCC---------Cc-CcEEEEcccccccCCCCceEEEEE--ecChHHHHHH----HHHHHhcCCCCCHHHHHHHHhccC-
Q psy12791 191 SLP---------WG-VDIVLYSLTKYMNGHSDVVMGATV--TNDDSLQARL----KFLQNSMGVVPSPFDCWLVTRGLK- 253 (393)
Q Consensus 191 ~~~---------~~-~di~~~S~sK~~~G~~G~r~G~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~- 253 (393)
..+ .+ --+|+.|+||.| |+=|-|+|++. +.+.+...++ +.......+++....+......+.
T Consensus 222 eeDa~~lR~~a~~~~~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~ 300 (396)
T COG1448 222 EEDAYALRLFAEVGPELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNN 300 (396)
T ss_pred HHHHHHHHHHHHhCCcEEEEehhhhhh-hhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCC
Confidence 111 11 258999999999 69999999854 4555555544 333333444444444444333332
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHh
Q psy12791 254 ---------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLES 324 (393)
Q Consensus 254 ---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
.+...++++.+.+..+.+.|+.+..-..+. .+ ....||++++= -++++++++.++
T Consensus 301 p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~-----------~i----~~Q~GMFsy~G-ls~~QV~rLree 364 (396)
T COG1448 301 PELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFD-----------FI----ISQRGMFSYTG-LSPEQVDRLREE 364 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc-----------hH----hhcCceeecCC-CCHHHHHHHHHh
Confidence 233455555566666666666421111010 00 11247777762 289999999998
Q ss_pred cCcc
Q psy12791 325 LLIF 328 (393)
Q Consensus 325 l~~~ 328 (393)
..+.
T Consensus 365 ~~IY 368 (396)
T COG1448 365 FGIY 368 (396)
T ss_pred ccEE
Confidence 7764
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=129.98 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=122.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
++....+.++.+|+.+|++...+++||++. + .++.+++.+||.|++++.+|-+.+ ..++...|+..+++...
T Consensus 172 ~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~---hgaLiLsGa~PVYl~P~~n~ 248 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNH---HGALIQAGATPVYLETARNP 248 (720)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH---HHHHHHcCCeEEEeeccccc
Confidence 345678889999999999999999999886 7 788889999999999999998743 22356789999988642
Q ss_pred -------C-----HHHHHhhcCCC----------CcEEEEecCCCCcccccCHHHHHHH-HHhCCCcEEEEeCccCcccc
Q psy12791 132 -------K-----IENLIKYIKPN----------TKMVWIENPTNPLMTVFDVKAISAV-VKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 132 -------d-----~~~l~~~l~~~----------~~~v~l~~p~nptG~~~~~~~l~~l-~~~~~~~~livDea~~~~~~ 188 (393)
+ .+.+++++.+. .+++++++|+. -|.+.++++|.++ ++.+ + +|++|||++....
T Consensus 249 ~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~-~-~llvDEAhgah~~ 325 (720)
T PRK13578 249 FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLC-D-YILFDSAWVGYEQ 325 (720)
T ss_pred cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccC-C-cEEEeCcchhhhc
Confidence 2 34477766533 58999999984 5999999999998 6777 7 9999999987432
Q ss_pred cCC---------CCCcCc----EEEEcccccccCCCCceEEEEEec
Q psy12791 189 QKS---------LPWGVD----IVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 189 ~~~---------~~~~~d----i~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
..+ +..|+| +++.|.||.++|+.. ..++-.+
T Consensus 326 F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQ--aS~LHvk 369 (720)
T PRK13578 326 FIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQ--TSQIHKK 369 (720)
T ss_pred cCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhh--HhhhhcC
Confidence 222 235788 999999999866654 5555444
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-12 Score=122.05 Aligned_cols=285 Identities=15% Similarity=0.140 Sum_probs=162.1
Q ss_pred CCCchHHHHHHHHHHHhCCC----cEEEe-ccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhccc----CC-
Q psy12791 56 SNNPTRRNLERCIASLEEAK----HGLCY-SSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPK----IG- 122 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~----~~i~~-~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~----~g- 122 (393)
++++...+|.++|++..... ..+++ +||++|. .++. .......+|+.....|++........... .+
T Consensus 79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~ 158 (442)
T TIGR00709 79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV 158 (442)
T ss_pred cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence 45677788889998876432 33454 7999987 4443 22233457888888887754332222110 00
Q ss_pred ----cEEEeeCCCC-------------H----HHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 123 ----LEVDFVDLRK-------------I----ENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 123 ----~~v~~~~~~d-------------~----~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
..+..++..+ . +.+++.+. +++.+|+++..++..|.+.+ +++|.++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~ 238 (442)
T TIGR00709 159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238 (442)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 1123333221 0 11223331 35788888888777787754 8899999999
Q ss_pred CCCcEEEEeCccCcccc-cC-----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 172 HPDILLVLDNTFLTAYY-QK-----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 172 ~~~~~livDea~~~~~~-~~-----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+ |+++|.||++..+.. .. ......|+++ ++|.++ . |+++|+++++ +++ +.+...........++..+
T Consensus 239 ~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-~-G~Pigav~~~-~~~-~~~~~~~~~~T~~gnpla~ 311 (442)
T TIGR00709 239 H-DIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVG-G-GLPLAVLLIA-PEF-DAWQPAGHTGTFRGNQLAM 311 (442)
T ss_pred c-CCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--Eccccc-C-CcccEEEEEc-hHH-hccCCCcCCCCCCcCHHHH
Confidence 9 999999999986421 11 1223468887 789995 3 7999999997 553 4332111111223466666
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH----
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA---- 315 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (393)
..+...++.+.+ ..++..+....+.+.|++ ++.+. +.+|.|.++.+.+..+.
T Consensus 312 aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~------------------~vrG~Gl~~~ie~~~~~~~~~ 373 (442)
T TIGR00709 312 VTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG------------------NVRGRGLMQGIMIVDERQSKD 373 (442)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCee------------------eeeccceEEEEEEccCccccc
Confidence 666665544321 233333444444444443 22222 23566788888874211
Q ss_pred ---------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 316 ---------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 316 ---------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
+....+...+...++-+... +...+.||+.+.+..++++++.+.++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-------------------------~~~~~~l~~~Ppl~it~~ei~~~~~~ 428 (442)
T TIGR00709 374 ATGAYPRDCELAAAIQGACFENGLLLETG-------------------------GREGEVFRLLCPITIDQEECEEGISR 428 (442)
T ss_pred ccccCCcchHHHHHHHHHHHHCCeEEeec-------------------------CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 12334444433323222110 11146889999888888888777766
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
+++.
T Consensus 429 l~~~ 432 (442)
T TIGR00709 429 FKQA 432 (442)
T ss_pred HHHH
Confidence 6543
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-14 Score=126.20 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=186.1
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHH
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~ 137 (393)
....++++..|+++|.+++++++.|-... ..+..++.+|.-|+.....|.+ +..-++.-|+.++.+..+|.++|+
T Consensus 182 ~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaS----i~~GaRLSgAtiRVfkHNdm~~LE 257 (519)
T KOG1357|consen 182 EEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHAS----LITGARLSGATTRVFRHNDMQGLE 257 (519)
T ss_pred HHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchh----eeccccccCceEEEEecCCHHHHH
Confidence 45678999999999999999999996665 5667788999888887777764 566788999999999999988888
Q ss_pred hhcCC-------CC-----c-EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC----------CCCC
Q psy12791 138 KYIKP-------NT-----K-MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK----------SLPW 194 (393)
Q Consensus 138 ~~l~~-------~~-----~-~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~----------~~~~ 194 (393)
+.+.+ +| + +|+++.....-|.+.++.++.++.+++ .++++.||+++.+.... ....
T Consensus 258 r~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkky-kayl~lDEAHSiGA~g~tGrgvce~~g~d~~ 336 (519)
T KOG1357|consen 258 RLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKY-KAYLYLDEAHSIGAMGATGRGVCEYFGVDPE 336 (519)
T ss_pred HHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccc-cEEEEeeccccccccCCCCcceeeccCCCch
Confidence 87742 22 3 455578888889999999999999999 99999999999754311 1123
Q ss_pred cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccC---------CHHHHHHHHH
Q psy12791 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLK---------TLPCRLKEHE 263 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 263 (393)
..||.+++|+|+++ .. +||+.++ +++++.++.... ..+...++..+.....+++ ...++.+++.
T Consensus 337 dvDImMGtftKSfg-a~---GGyiags-k~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~ 411 (519)
T KOG1357|consen 337 DVDIMMGTFTKSFG-AA---GGYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLA 411 (519)
T ss_pred hheeecceehhhcc-cc---cceecCc-HHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHH
Confidence 57899999999994 32 7888887 888887754332 2344444444333333222 2344666677
Q ss_pred HHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccC
Q psy12791 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 264 ~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
+|...++..|+....+ .+-. . -+.++-+-+- .+..+..|-+.+....+++...+. .+.
T Consensus 412 ~ns~yfr~~l~~~gfi---vyG~-~--------------dSpVvplll~-~~~k~~~f~r~~l~~nigvVvvgf---Pat 469 (519)
T KOG1357|consen 412 ENSRYFRWELQKMGFI---VYGN-N--------------DSPVVPLLLY-GPAKIVAFSREMLERNIGVVVVGF---PAT 469 (519)
T ss_pred hhhHHHHHhhhcCcEE---EecC-C--------------CCCcceeeec-CcccccHHHHHHHhcCceEEEEeC---CCc
Confidence 7777776666543221 1110 0 1233333331 222333333333222222221111 000
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
| .-++.+|++.+..++.|.++.+.++...+.
T Consensus 470 p-----------------l~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 470 P-----------------LLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred h-----------------HHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 1 115778999999999888888887776543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=120.86 Aligned_cols=278 Identities=14% Similarity=0.086 Sum_probs=177.6
Q ss_pred chHHHHHHHHHHHhCCC---cEEE-eccHHHHH-HHHHHhc-CCCCeEEEcCCCccchHHHHH-HhcccCCc-EEEeeCC
Q psy12791 59 PTRRNLERCIASLEEAK---HGLC-YSSGLGAV-TAVTHLL-SAGDHIISGDDVYGGTYRYFA-QVAPKIGL-EVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~---~~i~-~~~G~~al-~~~~~~~-~~gd~vl~~~~~y~~~~~~~~-~~~~~~g~-~v~~~~~ 130 (393)
....++++.|.++++.+ +.++ .+||+.++ .++..++ ++|++|++.. .|+. .+. .+++.+|+ ++..+..
T Consensus 39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~---r~~~eia~~~g~~~v~~l~~ 114 (374)
T TIGR01365 39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK---GWVTDVTKQLKLPDVRVLEA 114 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH---HHHHHHHHhcCCCCcEEEcC
Confidence 45667788888899874 2344 45666678 7788888 5888888754 5543 234 77888898 4666654
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTK 205 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK 205 (393)
+ ++++++. + +.|+++|.-..||+..|++++.... + ++++|+|.+.+.+.....++ +.|+++.|..|
T Consensus 115 ~~g~~~~~~~ve~----~-~~v~~vhnETSTGv~npv~~i~~~~--~-~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK 185 (374)
T TIGR01365 115 EYGKLPDLKKVDF----K-NDVVFTWNGTTSGVRVPNGDFIPAD--R-EGLTICDATSAAFAQDLDYH-KLDVVTFSWQK 185 (374)
T ss_pred CCCCCCCHHHcCC----C-CCEEEecCCCchheecccccccccc--C-CCcEEEEccchhcCCCCChh-HCcEEEEechh
Confidence 3 6777752 1 2367899999999999987665322 5 89999999988665433333 58999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHH------H--------------hcCCCC-C-HHH-HHHHHhcc------CCHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQ------N--------------SMGVVP-S-PFD-CWLVTRGL------KTLP 256 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~------~--------------~~~~~~-~-~~~-~~~~~~~~------~~~~ 256 (393)
+++++|| +++++.+ ++.+++.+... . ..+... . +.. .+.+...+ ..++
T Consensus 186 ~L~~ppG--ls~v~vs-~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle 262 (374)
T TIGR01365 186 VLGGEGA--HGMLILS-PRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLK 262 (374)
T ss_pred ccCCCCc--eEEEEEC-HHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHH
Confidence 9999999 9999998 66666554211 0 001111 1 111 11222222 2477
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcceEeC-CCCCCCcchHHHhhhcCCCcceEEEEEcCCHH-----H-----HHHHHHhc
Q psy12791 257 CRLKEHERGSIEVAKFLESHPCVKGVLH-PGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE-----E-----TRIFLESL 325 (393)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~~~~~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~l 325 (393)
.+.+++.++++.+.++++..+....+.. +.. + ...++.+.++.... + ...+.+.+
T Consensus 263 ~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~-------------r-S~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (374)
T TIGR01365 263 PLIARADDNLAVLEAFVAKNNWIHFLAETPEI-------------R-SNTSVCLKVVDPAIDALDEDAQADFAKELISTL 328 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccCCCChhh-------------c-CCCeEEEEeCCccccccccchhhHHHHHHHHHH
Confidence 8889999999999999998653221110 110 0 12345666632110 2 45677777
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+..++.+..|... ..+..+||.-.-+-+.++++.+..+|.=
T Consensus 329 ~~~gi~i~~G~~~-----------------------~~~~~fRIg~~G~i~~~di~~l~~~l~~ 369 (374)
T TIGR01365 329 EKEGVAYDIGSYR-----------------------DAPSGLRIWCGATVEKSDLECLCPWLDW 369 (374)
T ss_pred HHCCEEEeccccc-----------------------cCCCceEEecCCcCCHHHHHHHHHHHHH
Confidence 6555554433210 1146899998877788888898888863
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=113.37 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhc--CCCCeEEEcCC-CccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLL--SAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~--~~gd~vl~~~~-~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
+.|-.+||-++|+. .+++++.+++. + ..+.+.+ .+|+.||+++- +|++-.......++..+.....--.+.+++
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~ 158 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRA 158 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHH
Confidence 45778888899986 68888888887 6 5555543 45888888765 555544455566666664411111236789
Q ss_pred HHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEcccccccCCCCce
Q psy12791 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVV 214 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r 214 (393)
+++++++++.+|++++.|.-||...++.+|-.+++++ |++++.|-+++.+.....+. .|+|+-+++..|+++|-||-.
T Consensus 159 ~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~-galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGap 237 (407)
T COG3844 159 LEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQH-GALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAP 237 (407)
T ss_pred HHHhhccceEEEEeccccccccceeeHHHHHHHHHhc-CceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCc
Confidence 9999999999999999999999999999999999999 99999999999877644443 589999999999999888865
Q ss_pred EEEEEec
Q psy12791 215 MGATVTN 221 (393)
Q Consensus 215 ~G~~~~~ 221 (393)
.|..+.+
T Consensus 238 a~l~v~~ 244 (407)
T COG3844 238 AGLFVAP 244 (407)
T ss_pred eeEEecc
Confidence 5555543
|
|
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-13 Score=118.08 Aligned_cols=218 Identities=14% Similarity=0.135 Sum_probs=145.4
Q ss_pred CchHHHHHHHHHHHhC----C---CcEEEeccHHHH-HHHHHH-h-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLEE----A---KHGLCYSSGLGA-VTAVTH-L-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~----~---~~~i~~~~G~~a-l~~~~~-~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+.+-+|+.+|+++. . ++.|++|+|++. +..++. + ..+.+-|++|-|.|+ .|......+|...+.
T Consensus 112 SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYP----LYsAti~l~~~~~v~ 187 (475)
T KOG0258|consen 112 SQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYP----LYSATISLLGGTQVP 187 (475)
T ss_pred ccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCc----hhHHHHHHhCCcccc
Confidence 4567778999998863 2 268999999875 644444 3 346788999999998 677777788888776
Q ss_pred eCCC-------CHHHHHhhcCC-----CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC-
Q psy12791 128 VDLR-------KIENLIKYIKP-----NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS- 191 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~- 191 (393)
+-++ |.+++++.+++ +++++++.||.||||.++. +++|..+|.+. ++.|+-||+|.+.++...
T Consensus 188 YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~-~l~llaDEVYQ~Nvy~~~s 266 (475)
T KOG0258|consen 188 YYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE-GLVLLADEVYQDNVYTTGS 266 (475)
T ss_pred eeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc-CeEEechHHHHhhccCCCc
Confidence 6554 67777776642 5789999999999999997 77888889999 999999999998554321
Q ss_pred -C----------C-CcC----cEEEEcccccccCCCCceEEEEEe--cChHHHHHHHHHHHhcC--------------CC
Q psy12791 192 -L----------P-WGV----DIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKFLQNSMG--------------VV 239 (393)
Q Consensus 192 -~----------~-~~~----di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~~~~~~~--------------~~ 239 (393)
+ . ... .+..+|.||.+.|-.|.|+||+-. .+++..+.+.+....-- ..
T Consensus 267 kFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnP 346 (475)
T KOG0258|consen 267 KFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNP 346 (475)
T ss_pred chHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCC
Confidence 0 0 111 367788899998999999999653 33555554443322110 01
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcce
Q psy12791 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKG 281 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (393)
+.|.+.-+.+-. ..-....+.+.+++..+.+.+++.+++.+
T Consensus 347 P~Pgd~Sy~~~~-~Ekd~il~~l~~ra~l~~~~~ns~~gi~c 387 (475)
T KOG0258|consen 347 PKPGDPSYDLFS-SEKDGILSSLRSRAKLTEDAFNSLEGISC 387 (475)
T ss_pred CCCCCcchhhhh-hhhHhHHHHHHHHhHHHHHHHhhcCceee
Confidence 111111110000 11122345555666777888888877654
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=120.29 Aligned_cols=293 Identities=16% Similarity=0.194 Sum_probs=182.9
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHh
Q psy12791 60 TRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIK 138 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~ 138 (393)
..-.|++.||+++|.++.|+.+.|-+++ .++.++.+.||.+++..-... ..+..++...-.+.++..+|.++++.
T Consensus 140 vHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nf----aIq~GlqlSRS~i~~Fkhndm~~ler 215 (467)
T KOG1358|consen 140 VHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNF----AIQKGLQLSRSTISYFKHNDMEDLER 215 (467)
T ss_pred eecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhH----HHHHHHhhhhheeEEecCCCHHHHHH
Confidence 3457999999999999999999999998 899999999999888765544 35555555556788888888888887
Q ss_pred hcCCCC-------------cEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---C------CC-Cc
Q psy12791 139 YIKPNT-------------KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---S------LP-WG 195 (393)
Q Consensus 139 ~l~~~~-------------~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---~------~~-~~ 195 (393)
.+.+.+ +.|+++..--+||.++|+.+|.++..+| ..-+++||+++.+.... . .+ -.
T Consensus 216 ll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Ky-k~RvildEs~SfG~lg~~GrGvteH~~v~~~~ 294 (467)
T KOG1358|consen 216 LLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKY-KFRVILDESLSFGVLGKTGRGVTEHFGVPITD 294 (467)
T ss_pred hccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhh-eEEEEEecccccccccccCccccccCCCCccc
Confidence 775433 4677788888999999999999999999 99999999999865432 1 11 24
Q ss_pred CcEEEEcccccccCCCCceEEEEEecChHH--HHHHHHHHHhcCCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHH
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTNDDSL--QARLKFLQNSMGVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVA 270 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 270 (393)
.|++++|+.-.+++. +|+++++ .-+ .+++......+.+...+..+..+...+. ..+..++.+.+....+.
T Consensus 295 iDiv~~sm~~alas~----GgFc~G~-~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H 369 (467)
T KOG1358|consen 295 IDIVTASMETALASG----GGFCAGK-SFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFH 369 (467)
T ss_pred eeeeeeccccccccc----Cceeecc-eeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccc
Confidence 689999999888522 6777764 322 2334333344444444444333332221 11122223333333333
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc---CCHHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN---GGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
..|....+..-. + ..-++++-+.+. ++.++-..+++.+-...+.- +. ..+
T Consensus 370 ~~l~~~s~~~v~---~--------------~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~---~~-------ll~ 422 (467)
T KOG1358|consen 370 AALSSNSGFIVS---G--------------SPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE---GV-------LLT 422 (467)
T ss_pred hhhhcCCceEEe---c--------------CcCCceeeeeecccccchHHHHHHHHHHHHHHHhh---cc-------eeh
Confidence 334332221111 1 112455666554 24566666666653222111 00 000
Q ss_pred cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 348 THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 348 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
...++...+. . .-+..||+.+....++++++++.+.+++.+.
T Consensus 423 ~a~~~~~~e~--~-~~~pSiri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 423 RAKYLEKLER--C-PIPPSIRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred hhhhhhhccc--C-CCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 0001100000 0 1145899999999999999999999987653
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-11 Score=118.34 Aligned_cols=283 Identities=15% Similarity=0.117 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcc-----cCC-----
Q psy12791 58 NPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAP-----KIG----- 122 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~~g----- 122 (393)
.+...+|.+.|++.... +...+.+||++|+ .++. .......+|+.-...|++.......+.. ..+
T Consensus 95 ~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 174 (457)
T PRK05639 95 SERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLM 174 (457)
T ss_pred CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCC
Confidence 46667888899887654 3577788899987 4442 2233345788878888774422211111 111
Q ss_pred cEEEeeCCCC-------------H--------HHHHhhc------CCCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 123 LEVDFVDLRK-------------I--------ENLIKYI------KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 123 ~~v~~~~~~d-------------~--------~~l~~~l------~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
-.+..+|..+ . +.+++.+ .+++.+|+++..+...|.+.| +++|.++|++
T Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~ 254 (457)
T PRK05639 175 PNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE 254 (457)
T ss_pred CCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 1233444321 1 2344433 245889999988888888776 8999999999
Q ss_pred CCCcEEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 172 HPDILLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 172 ~~~~~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+ |+++|+||++..+- . ........|+++ ++|.++| |+.+|+++++ +++.+.... ........+|..+
T Consensus 255 ~-g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g--G~pi~av~~~-~~i~~~~~~-~~~~T~~g~p~~~ 327 (457)
T PRK05639 255 H-GILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS--GMGLSGVIGR-KELMDLTSG-SALLTPAANPVIS 327 (457)
T ss_pred c-CCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC--CCcceeEEeh-HHHHhhcCC-CcccCCCcCHHHH
Confidence 9 99999999988521 1 111223578887 7899952 4568999987 777762211 1111223456666
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-----C
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-----G 314 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 314 (393)
..+...++.+.. ..++..+..+.+.+.|++ ++.+. +.+|.|.++.+++.. +
T Consensus 328 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~------------------~VrG~Gl~~gve~~~~~~~~~ 389 (457)
T PRK05639 328 AAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIG------------------DVRGKGLMIGVEIVKENGKPD 389 (457)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEE------------------eeccceeEEEEEEecCCCCCC
Confidence 666555544322 223333344445554443 22221 235667788887732 2
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+....+.+.+...++-+... |...+.||+++.+..++++++.+.++|++.
T Consensus 390 ~~~~~~~~~~~~~~Gv~~~~~-------------------------g~~~~~lr~~Ppl~it~~~id~~~~~l~~~ 440 (457)
T PRK05639 390 PELTGKICWRAFELGLILPSY-------------------------GMFGNVIRITPPLVITKEIAEKGLEIMERA 440 (457)
T ss_pred HHHHHHHHHHHHhCCeEEeec-------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 234455555554333332210 111478999999988888888777777654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-12 Score=120.86 Aligned_cols=289 Identities=16% Similarity=0.119 Sum_probs=166.4
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hc---C---CCCeEEEcCCCccchHHHHHHhccc----
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LL---S---AGDHIISGDDVYGGTYRYFAQVAPK---- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~---~---~gd~vl~~~~~y~~~~~~~~~~~~~---- 120 (393)
+.++...++.+.|++.... +...+.+||++|+ .++.. .. . ...+|+.-..+|++...........
T Consensus 92 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~ 171 (460)
T PRK06541 92 YAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFK 171 (460)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhc
Confidence 4567777888888887643 3577778899987 44421 11 1 1357888787777643221111000
Q ss_pred --CC---cEEEeeCCC----------C--------HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHH
Q psy12791 121 --IG---LEVDFVDLR----------K--------IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVV 169 (393)
Q Consensus 121 --~g---~~v~~~~~~----------d--------~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~ 169 (393)
++ ..+..+|.. + ++.+++.+. +++.+|+++..+++.|.+.+ +++|.++|
T Consensus 172 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc 251 (460)
T PRK06541 172 APFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREIC 251 (460)
T ss_pred cccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 00 112222211 1 255666663 34667777777999999988 99999999
Q ss_pred HhCCCcEEEEeCccCcc-cccC-----CCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHHH----hcCC
Q psy12791 170 KQHPDILLVLDNTFLTA-YYQK-----SLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQN----SMGV 238 (393)
Q Consensus 170 ~~~~~~~livDea~~~~-~~~~-----~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~~----~~~~ 238 (393)
+++ |+++|+||++..+ .... ......|+++ ++|.++ .|+ ++|+++++ +++.+.+..... ....
T Consensus 252 ~~~-g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~--~G~~pigav~~~-~~i~~~~~~~~~~~~~~~T~ 325 (460)
T PRK06541 252 DRY-DVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGIT--SGYSPLGAMIAS-DRLFEPFLDGPTMFLHGYTF 325 (460)
T ss_pred HHc-CCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--eccccc--CCccceeEEEEc-HHHHHHhhcCCCccccCCCC
Confidence 999 9999999999543 2111 1223467774 889994 464 79999997 777776643211 1122
Q ss_pred CCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-
Q psy12791 239 VPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA- 315 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (393)
..+|..+..+...++.+. ...++..+....+.+.|+++.. +|- +.+.++.|.++.+.+..+.
T Consensus 326 ~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-----~~~----------v~~vrg~Gl~~~ie~~~~~~ 390 (460)
T PRK06541 326 GGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-----LPI----------VGDVRGDGYFYGIELVKDKA 390 (460)
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCC----------eEEEEecceEEEEEEecCcc
Confidence 345666666655554432 2345555556666666654311 010 1112445778888873211
Q ss_pred -------HHH-----HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHH
Q psy12791 316 -------EET-----RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383 (393)
Q Consensus 316 -------~~~-----~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l 383 (393)
... ..+.+.+...++-+... +.....|||++.+..++++++.+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------~~g~~~lrl~Ppl~~t~~~id~~ 445 (460)
T PRK06541 391 TKETFTDDESERLLRGFLSPALFEAGLYCRAD-------------------------DRGDPVVQLAPPLISGQEEFDEI 445 (460)
T ss_pred cccCCcchhhhhhHHHHHHHHHHhCCeEEEec-------------------------CCCCCEEEEECCCCCCHHHHHHH
Confidence 111 12333333223222110 01136899999988888888888
Q ss_pred HHHHHHh
Q psy12791 384 DQALRKA 390 (393)
Q Consensus 384 ~~al~~~ 390 (393)
.++|++.
T Consensus 446 ~~~l~~~ 452 (460)
T PRK06541 446 EQILRSV 452 (460)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=116.85 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=142.9
Q ss_pred HHHHHHHHHhCCCc----EEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 63 NLERCIASLEEAKH----GLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 63 ~lr~~la~~~~~~~----~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
++-+.+++++|.+. .+++++|++++ .++... ..+...+++++.+|.+ +.++++..|++++.+|.+
T Consensus 137 ~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~S----v~KAa~llgi~~~~Vp~d~~g~ 212 (470)
T PLN02263 137 GVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDTLVSGE 212 (470)
T ss_pred HHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHH----HHHHHHhcCCcceEeccCCCCc
Confidence 34455677777642 56777777774 544432 2233478888888875 678899999999999876
Q ss_pred -CHHHHHhhcCCC---CcEEEEecCCCCcccccCHHHHHHHHHhCCCc-----EEEEeCccCccccc---C--CCC--Cc
Q psy12791 132 -KIENLIKYIKPN---TKMVWIENPTNPLMTVFDVKAISAVVKQHPDI-----LLVLDNTFLTAYYQ---K--SLP--WG 195 (393)
Q Consensus 132 -d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-----~livDea~~~~~~~---~--~~~--~~ 195 (393)
|+++|++++.++ +-+|+.+.++.++|.+=|+++|.++|+++ |+ |++||.||+.+... . .++ ..
T Consensus 213 mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~ 291 (470)
T PLN02263 213 IDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEEC-GFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKP 291 (470)
T ss_pred CcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHc-CCccCCeeEEEeccchhhHhhhcccccccCCCcC
Confidence 899999888654 34666788999999999999999999999 86 99999999875431 1 111 24
Q ss_pred CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--------cCCCC--CHHHHHHHHhc--cCCHHHHHHHHH
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--------MGVVP--SPFDCWLVTRG--LKTLPCRLKEHE 263 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~ 263 (393)
+|-+..++|||+..+.+ .|.++.++ ...+.+.....+ .++-. .....|+.++. .+.+..+.++..
T Consensus 292 vDSIsvD~HK~l~~P~~--cgvll~R~-~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~ 368 (470)
T PLN02263 292 IGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCL 368 (470)
T ss_pred ccEEEECCccccCCCcC--EEEEEEeh-hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 88999999999854544 88888874 433433221111 11111 13334444443 355777888888
Q ss_pred HHHHHHHHHHhhCC
Q psy12791 264 RGSIEVAKFLESHP 277 (393)
Q Consensus 264 ~~~~~l~~~l~~~~ 277 (393)
+.++.+.+.|++.+
T Consensus 369 ~~A~~l~~~l~~~g 382 (470)
T PLN02263 369 RNAHYLKDRLREAG 382 (470)
T ss_pred HHHHHHHHHHHhCC
Confidence 89999999998763
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=122.85 Aligned_cols=229 Identities=20% Similarity=0.172 Sum_probs=159.4
Q ss_pred hHHHHHHH----HHHHhCCC---cEEEeccHHHHH-HHHHHh---cC--C---CC------eEEEcCCCccchHHHHHHh
Q psy12791 60 TRRNLERC----IASLEEAK---HGLCYSSGLGAV-TAVTHL---LS--A---GD------HIISGDDVYGGTYRYFAQV 117 (393)
Q Consensus 60 ~~~~lr~~----la~~~~~~---~~i~~~~G~~al-~~~~~~---~~--~---gd------~vl~~~~~y~~~~~~~~~~ 117 (393)
...++++. ++++++.+ ...++++|++++ .++++. .. . +. +|+++.-.|.+ +.+.
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s----~~Ka 173 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFS----FEKA 173 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhH----HHHH
Confidence 44444444 56667774 366777777774 444321 10 0 11 58888888875 7888
Q ss_pred cccCCcEEEeeCCC------CHHHHHhhcCCCCcE--EEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 118 APKIGLEVDFVDLR------KIENLIKYIKPNTKM--VWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 118 ~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~--v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
++.+|++...++.+ |++++++++++++.. |+.+.++.+||.+=|+++|.++|+++ +++++||.|++.+...
T Consensus 174 a~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~-~i~lHVDAA~GG~~~p 252 (460)
T COG0076 174 ARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEY-GIWLHVDAAFGGFLLP 252 (460)
T ss_pred HHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHc-CCcEEEEccccceeec
Confidence 89999887777654 799999999988766 88899999999999999999999999 9999999999986541
Q ss_pred --C---C--CC-CcCcEEEEcccccccCCCCceEEEEEecChH-HHHHHHHHHHhcCC-----------CC--CHHHHHH
Q psy12791 190 --K---S--LP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-LQARLKFLQNSMGV-----------VP--SPFDCWL 247 (393)
Q Consensus 190 --~---~--~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~-----------~~--~~~~~~~ 247 (393)
. . .. .++|-++.++||++.-++| .|+++.++++ +.+.+.....+++. -. ....+|+
T Consensus 253 f~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~ 330 (460)
T COG0076 253 FLEPDGRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYA 330 (460)
T ss_pred ccCccchhhcCCCCceEEEECcccccCCCCC--ceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHH
Confidence 1 1 11 2678999999999866777 9999999874 44443322222221 01 1122333
Q ss_pred HHhc--cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 248 VTRG--LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
..+. .+.+....++..++++++++.|+..+..+-+.-|. .+++.|+.+
T Consensus 331 ~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~-----------------l~~V~fr~~ 380 (460)
T COG0076 331 NLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPE-----------------LPIVAFRLK 380 (460)
T ss_pred HHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc-----------------cceEEEEcC
Confidence 3333 35677778888899999999998876555444444 467888874
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-11 Score=117.51 Aligned_cols=287 Identities=13% Similarity=0.003 Sum_probs=166.1
Q ss_pred CCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc-----c--C-
Q psy12791 56 SNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP-----K--I- 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~-----~--~- 121 (393)
+.++...+|.+.|++.... +...+.+||++|+ .++.. .....++|+.-...|++.......+.. . +
T Consensus 94 ~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~ 173 (441)
T PRK05769 94 FYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF 173 (441)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence 3456778888888887642 3566778888887 54431 223346788878888775422222110 0 0
Q ss_pred --CcEEEeeCCC----------C--------HHHHHh-hc-----CCCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 122 --GLEVDFVDLR----------K--------IENLIK-YI-----KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 122 --g~~v~~~~~~----------d--------~~~l~~-~l-----~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
-..+..++.. + ++.+++ .+ .+++.+|+++..+...|.+.| +++|.++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~ 253 (441)
T PRK05769 174 PLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADK 253 (441)
T ss_pred CCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHH
Confidence 0123333321 1 223444 22 235788999988888899888 9999999999
Q ss_pred CCCcEEEEeCccCccc-cc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 172 HPDILLVLDNTFLTAY-YQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 172 ~~~~~livDea~~~~~-~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+ |+++|+||++..+. .. .......|+++ ++|.++ .|+++|+++++ +++.+..... .......++..+
T Consensus 254 ~-g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~--~G~p~gav~~~-~~i~~~~~~~-~~~T~~g~p~~~ 326 (441)
T PRK05769 254 Y-GILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIA--GGLPLGAVIGR-AELMFLPPGS-HANTFGGNPVAA 326 (441)
T ss_pred c-CCEEEEechhhCCCcccceehhhccCCCCCEEE--Eccccc--CCcccEEEEEe-hhhhhcCCCC-CCCCCCcCHHHH
Confidence 9 99999999998531 11 11122357774 789994 46889999987 6665433211 111112356666
Q ss_pred HHHHhccCCHHH-HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----HHHHH
Q psy12791 246 WLVTRGLKTLPC-RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-----AEETR 319 (393)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 319 (393)
..+...++.+++ ..++..+..+.+.+.|++... .++- ..+.++.|.++.+.+..+ .+...
T Consensus 327 aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~----~~~~----------~~~vrg~G~~~~i~~~~~~~~~~~~~~~ 392 (441)
T PRK05769 327 AAALATLEELEEGLLENAQKLGEYLRKELKELKE----KYEF----------IGDVRGLGLMIGVELVKDRKEPDPKLRD 392 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCC----------eeeeecceEEEEEEeccCCccccHHHHH
Confidence 666665554432 233444444555555543210 0010 112245677888887422 13344
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.+.+...++-+.. .....+|+++....++++++.+.+++++.
T Consensus 393 ~~~~~~~~~Gil~~~---------------------------~~~~~lr~~p~l~~t~~~id~~~~~l~~~ 436 (441)
T PRK05769 393 KVLYEAFKRGLLLLG---------------------------AGKSAIRIIPPLIITEEEADIGLEILEEA 436 (441)
T ss_pred HHHHHHHhCCcEEec---------------------------CCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 454444333322210 11367999999999999998888888765
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-11 Score=117.00 Aligned_cols=292 Identities=14% Similarity=0.096 Sum_probs=170.2
Q ss_pred CCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHH---hc----CCC-CeEEEcCCCccchHHHHHHhccc-----
Q psy12791 56 SNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTH---LL----SAG-DHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~---~~----~~g-d~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
++++...+|.+.|++..+.. ...+.+||++|+ .++.. .. ++| .+|+.-...|++...........
T Consensus 86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 165 (451)
T PRK07678 86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY 165 (451)
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence 45667788999999887654 455668899986 44422 11 123 56888888887743221111000
Q ss_pred -CC---cEEEeeCCC--------------C---HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 121 -IG---LEVDFVDLR--------------K---IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 121 -~g---~~v~~~~~~--------------d---~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
++ ..+..++.. + ++.+++.+. +++.+|+++..+...|.+.| ++++.++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~ 245 (451)
T PRK07678 166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK 245 (451)
T ss_pred ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 00 112222221 1 223444452 46889999988877888876 8999999999
Q ss_pred CCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH------HHhcCCC
Q psy12791 172 HPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL------QNSMGVV 239 (393)
Q Consensus 172 ~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~------~~~~~~~ 239 (393)
| |+++|+||++..+ ... .......|+++ ++|.++| ..+.+|.++++ +++.+.+... .......
T Consensus 246 ~-g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lgg-G~~Pi~av~~~-~~i~~~~~~~~~~~~~~h~~T~~ 320 (451)
T PRK07678 246 H-GALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITS-AYLPLSATAVK-KEIYEAFKGKGEYEHFRHVNTFG 320 (451)
T ss_pred c-CCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eeccccc-CCcceeEEEEc-HHHHHHHhccCcccccccCCCCC
Confidence 9 9999999999753 111 11234578885 6799953 22569999997 7888776421 1112223
Q ss_pred CCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 240 PSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
.+|..++.+.+.++.+++ ..++..+..+.+.+.|++ ++.+. +.++.|.++.+.+..
T Consensus 321 gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~------------------~vrg~Gl~~~i~~~~ 382 (451)
T PRK07678 321 GNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVG------------------DIRGKGLLVGIELVN 382 (451)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEE------------------EEEeeceEEEEEEec
Confidence 457777666666654432 233344444444444432 22222 224567788888731
Q ss_pred --------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 314 --------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 314 --------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+.+....+.+.+...++-+...+ +.. ......|||++.+..++++++.+.+
T Consensus 383 ~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g-------~~v--------------~~~~~~lrl~Ppl~it~~eid~~~~ 441 (451)
T PRK07678 383 DKETKEPADNDKVASVVAACKEKGLIIGKNG-------DTV--------------AGYNNVLTLSPPLVISSEEIAFIVG 441 (451)
T ss_pred CCcccCcCchHHHHHHHHHHHHCCcEEeecC-------ccc--------------cCCCCEEEEECCCcCCHHHHHHHHH
Confidence 12334556555544443322110 000 0013679999999988888888888
Q ss_pred HHHHhh
Q psy12791 386 ALRKAC 391 (393)
Q Consensus 386 al~~~~ 391 (393)
++++..
T Consensus 442 ~l~~~l 447 (451)
T PRK07678 442 TLKTAL 447 (451)
T ss_pred HHHHHH
Confidence 887653
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=119.28 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=145.7
Q ss_pred eeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC-CcEEEeccHHHH-HHHHH--HhcCCCCeEEEcCCCccchHHHH
Q psy12791 39 FKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA-KHGLCYSSGLGA-VTAVT--HLLSAGDHIISGDDVYGGTYRYF 114 (393)
Q Consensus 39 ~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~-~~~i~~~~G~~a-l~~~~--~~~~~gd~vl~~~~~y~~~~~~~ 114 (393)
+.+++.+++..+..|+. |...--++.+.+.+.... +..-+++||++| +.++. .-....|+|+.-+-+|++..+.+
T Consensus 74 V~~Av~~~l~~G~~fg~-Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~ 152 (432)
T COG0001 74 VVEAVQEQLERGLSFGA-PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSL 152 (432)
T ss_pred HHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHH
Confidence 33444444445555654 334444566777776665 568899999999 45543 23455789999999998876544
Q ss_pred HHhc----------ccCCc------EEEeeCCCCHHHHHhhcCC---CCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 115 AQVA----------PKIGL------EVDFVDLRKIENLIKYIKP---NTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 115 ~~~~----------~~~g~------~v~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
..-+ ...|+ .+..+|.+|++.++++++. +..+|+++......|.+.| +++|.++|++
T Consensus 153 lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e 232 (432)
T COG0001 153 LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEE 232 (432)
T ss_pred HhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 3321 11121 3566677899999888864 5788999877777788887 8899999999
Q ss_pred CCCcEEEEeCccCccccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-c-CC-CCCHH
Q psy12791 172 HPDILLVLDNTFLTAYYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-M-GV-VPSPF 243 (393)
Q Consensus 172 ~~~~~livDea~~~~~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~ 243 (393)
+ |+++|.||+...+-.. .......|+. ++.|..+ .|+.+|.+.++ .++++.+...... . |. +.+|.
T Consensus 233 ~-G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIG--GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnpl 306 (432)
T COG0001 233 H-GALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIG--GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPL 306 (432)
T ss_pred c-CcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhc--CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHH
Confidence 9 9999999998865432 1112345665 5789995 56779999988 8888876543321 1 11 12344
Q ss_pred HHHHHHhccCCHHH---HHHHHHHHHHHHHHHHhh
Q psy12791 244 DCWLVTRGLKTLPC---RLKEHERGSIEVAKFLES 275 (393)
Q Consensus 244 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~ 275 (393)
.-......++.+.. -.+++.+...+|.+-|++
T Consensus 307 amaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~ 341 (432)
T COG0001 307 AMAAGLATLEELMTEEGVYERLDALGERLAEGLRA 341 (432)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 43333333333322 244555555566655553
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-11 Score=117.05 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=164.2
Q ss_pred CCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHHH--hc-----CC-CCeEEEcCCCccchHHHH---------HH
Q psy12791 57 NNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVTH--LL-----SA-GDHIISGDDVYGGTYRYF---------AQ 116 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~~--~~-----~~-gd~vl~~~~~y~~~~~~~---------~~ 116 (393)
.++...++.++|++... .+...+.+||++|+ .++.. .. .+ ..+|+.-...|++..... ..
T Consensus 87 ~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~ 166 (442)
T PRK13360 87 GHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRK 166 (442)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhh
Confidence 45667788888888764 34577788999987 44431 11 12 357888888887632110 00
Q ss_pred hcccCCcEEEeeCCC------------------CHHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHH
Q psy12791 117 VAPKIGLEVDFVDLR------------------KIENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~------------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~ 170 (393)
........+..+|.. .++++++.+. +++.+|+++..+...|.+.| +++|.++|+
T Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~ 246 (442)
T PRK13360 167 AFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICD 246 (442)
T ss_pred ccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 000000112223321 1346666663 35778999988988899988 999999999
Q ss_pred hCCCcEEEEeCccCcc-cccC-----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-------HHhcC
Q psy12791 171 QHPDILLVLDNTFLTA-YYQK-----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSMG 237 (393)
Q Consensus 171 ~~~~~~livDea~~~~-~~~~-----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~ 237 (393)
++ |+++|+||++..+ .... ......|++ +++|.++| ..+.+|.++++ +++.+.+... .....
T Consensus 247 ~~-g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~g-G~~P~gav~~~-~~i~~~~~~~~~~~~~~~~~~T 321 (442)
T PRK13360 247 KH-GILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTN-GAIPMGAVFVS-SEIHDAFMQGPEAGIEFFHGYT 321 (442)
T ss_pred Hc-CCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeecccc-CccceEEEEEc-HHHHHHhhcCCccccccccCCC
Confidence 99 9999999999542 2111 122346776 67899952 22458888887 7777765421 01112
Q ss_pred CCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--
Q psy12791 238 VVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-- 313 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 313 (393)
...++..+..+...++.+.+ ..++..+....+.+.|+++.. ++. +.+.++.|.+..+.+..
T Consensus 322 ~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~----------v~~vrG~Gl~~~~~l~~~~ 386 (442)
T PRK13360 322 YSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-----APH----------VIDIRNLGLVGAVELAPRD 386 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCC----------eeeeeccceEEEEEEecCC
Confidence 22466666666655544332 234444444555555553211 111 01123445555555531
Q ss_pred --CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 314 --GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 314 --~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+....+.+.+...++-+.. ..+.+||++.+..++++++.+.++|.+..
T Consensus 387 ~~~~~~~~~~~~~l~~~Gvl~~~----------------------------~~~~lr~~Ppl~~t~~eid~~~~~l~~~l 438 (442)
T PRK13360 387 GKPGKRAYEVFLKCFEKGLMIRY----------------------------TGDILALSPPLIIEEAQIDELFDILAQAL 438 (442)
T ss_pred CCcchhHHHHHHHHHHCCcEEEe----------------------------cCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 112334444443332322210 13579999999999999998888887653
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=105.53 Aligned_cols=249 Identities=21% Similarity=0.287 Sum_probs=165.0
Q ss_pred CchHHHHHHHHHHHhCCCcEE---EeccHHHHH-HHHHHhcCCCCeEEEcCCC-ccchHHHHHHh----------cccCC
Q psy12791 58 NPTRRNLERCIASLEEAKHGL---CYSSGLGAV-TAVTHLLSAGDHIISGDDV-YGGTYRYFAQV----------APKIG 122 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i---~~~~G~~al-~~~~~~~~~gd~vl~~~~~-y~~~~~~~~~~----------~~~~g 122 (393)
+-++..|++..|+.+|.+.++ -+.||+.|| .++..+++|||+.+...-. |. .+... ++.+|
T Consensus 64 D~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD----TLeevIG~rg~~~gSL~dfg 139 (416)
T COG4100 64 DLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYD----TLEEVIGLRGEGQGSLKDFG 139 (416)
T ss_pred ccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcch----hHHHHhccCCCCcccHHHhC
Confidence 567888999999999998544 478999999 8899999999998754322 22 23322 34456
Q ss_pred cEEEeeCCC-----CHHHHHhhcCCCCcEEEEec----CCCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccc-cCC
Q psy12791 123 LEVDFVDLR-----KIENLIKYIKPNTKMVWIEN----PTNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYY-QKS 191 (393)
Q Consensus 123 ~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~----p~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~-~~~ 191 (393)
+....+|+. |.+.+...++++||+|-+.- .+-|+-.+-+++++..+.++. |+++++||++|+.++. ..|
T Consensus 140 i~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EP 219 (416)
T COG4100 140 IKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEP 219 (416)
T ss_pred cceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCc
Confidence 666777764 89999999999999999853 345555555688888888875 8999999999999875 357
Q ss_pred CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCC--CCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGV--VPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 192 ~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
...|+|++.+|+-|.-+|----.+||++++ +++++....... ..|. ..+..+....-+++--.+....+..+.+.
T Consensus 220 t~vGaDliAGSLIKNpGGgiaktGGYiaGk-~~~ve~~~yRlTaPGIG~e~Gat~~~l~~myqGlFlAPhvv~qa~Kga~ 298 (416)
T COG4100 220 THVGADLIAGSLIKNPGGGIAKTGGYIAGK-AELVEAAAYRLTAPGIGREGGATLYSLREMYQGLFLAPHVVSQAVKGAH 298 (416)
T ss_pred cccchhhhccceeeCCCCceeeccceeech-HHHHHhhceeeecCCccccccccHHHHHHHHhhhccchHHHHHHhhhhH
Confidence 778999999999998864333347999998 888886642221 1111 11222222222233222333444445555
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce-EEEEEcCCHHHHHHHHHhcCc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM-LSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 327 (393)
-...+|..+ .++..++.. .....+ -.+.+ ++++.+-.|+++++.
T Consensus 299 fta~~le~l------g~~~~P~~~---------~kRtDlIQavkf-~~~eKmIaFcqaiQ~ 343 (416)
T COG4100 299 FTARFLEKL------GFPVNPKYD---------AKRTDLIQAVKF-GSKEKMIAFCQAIQA 343 (416)
T ss_pred HHHHHHHHc------CCCCCCccc---------ccccchhhheec-CCHHHHHHHHHHHhh
Confidence 556666643 222222211 011223 46777 689999999998864
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-11 Score=117.19 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=165.6
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hc----C-C-CCeEEEcCCCccchHHHHH---------
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LL----S-A-GDHIISGDDVYGGTYRYFA--------- 115 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~----~-~-gd~vl~~~~~y~~~~~~~~--------- 115 (393)
+.++...+|.++|++.... +...+.+||++|+ .++.. .. . + ..+|+.-...|++......
T Consensus 89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~ 168 (445)
T PRK09221 89 MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR 168 (445)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence 3456777888999887643 3577788899887 44421 11 1 1 3468888888876421110
Q ss_pred HhcccCCcEEEeeCCC------------------CHHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHH
Q psy12791 116 QVAPKIGLEVDFVDLR------------------KIENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVV 169 (393)
Q Consensus 116 ~~~~~~g~~v~~~~~~------------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~ 169 (393)
......-..+..++.. ..+++++.+. +++.+|+++......|.+.| +++|.++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc 248 (445)
T PRK09221 169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC 248 (445)
T ss_pred hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence 0000000112223221 1245565553 45789999999988999988 99999999
Q ss_pred HhCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-------HHhc
Q psy12791 170 KQHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSM 236 (393)
Q Consensus 170 ~~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~ 236 (393)
+++ |+++|+||++..+ ... .......|++ +++|.++| ..+.+|.++++ +++.+.+... ....
T Consensus 249 ~~~-g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~--~~gK~l~g-G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~ 323 (445)
T PRK09221 249 DKH-GILLIFDEVITGFGRLGAAFAAERFGVTPDII--TFAKGLTN-GAIPMGAVIAS-DEIYDAFMQGPEYAIEFFHGY 323 (445)
T ss_pred HHc-CCEEEEeehhhCCCcCchhhHHHhcCCCCCEE--Eecccccc-CcccceeeEEc-HHHHHhhccCccccccccccc
Confidence 999 9999999998642 111 1122345766 57899952 12348888887 7777766421 0111
Q ss_pred CCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-
Q psy12791 237 GVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG- 313 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (393)
.....+..+..+...++.+. ...++..+..+.+.+.|+++.. ++. +.+.++.|.+..+.+..
T Consensus 324 T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~----------v~~vrg~Gl~~~v~~~~~ 388 (445)
T PRK09221 324 TYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKG-----LPH----------VIDIRNIGLVAGIELAPR 388 (445)
T ss_pred CCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcc-----CCC----------EEEEecCceEEEEEEecc
Confidence 22245666666655554432 2344455555556666654311 111 11224556666666632
Q ss_pred ---CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 314 ---GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 314 ---~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+......+.+.+...++.+.. ....+|+++.+..++++++.+.++|++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~Gv~~~~----------------------------~~~~lr~~Ppl~~t~~eid~~~~~l~~~ 440 (445)
T PRK09221 389 PGAPGARGYEAFMKCFEKGLLVRY----------------------------TGDTIALSPPLIIEKAQIDELVDALGDA 440 (445)
T ss_pred cccccchHHHHHHHHHHCCeEEee----------------------------cCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 111233444444332322211 1357999999998988888888888765
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 441 l 441 (445)
T PRK09221 441 L 441 (445)
T ss_pred H
Confidence 3
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=116.79 Aligned_cols=285 Identities=15% Similarity=0.087 Sum_probs=163.0
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH--hc----C-C-CCeEEEcCCCccchHHHHHHhc------c
Q psy12791 57 NNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH--LL----S-A-GDHIISGDDVYGGTYRYFAQVA------P 119 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~--~~----~-~-gd~vl~~~~~y~~~~~~~~~~~------~ 119 (393)
.++...+|.++|++..... ...+.+||++|+ .++.. .. . + ..+|+.-..+|++......... .
T Consensus 88 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~ 167 (459)
T PRK05965 88 GSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHR 167 (459)
T ss_pred CCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhc
Confidence 4566778889998876432 455567899987 54432 11 1 2 3568888888877432111110 0
Q ss_pred cCCc---EEEeeCC---------CC--------HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 120 KIGL---EVDFVDL---------RK--------IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 120 ~~g~---~v~~~~~---------~d--------~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
.++. .+..++. +| ++++++.+. +++.+|+++..+...|.+.+ +++|.++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~ 247 (459)
T PRK05965 168 GFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRE 247 (459)
T ss_pred ccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 1110 1122221 12 245666663 45789999988888888776 8999999999
Q ss_pred CCCcEEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-------HHhcC
Q psy12791 172 HPDILLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-------QNSMG 237 (393)
Q Consensus 172 ~~~~~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~~~~ 237 (393)
| |+++|+||++..+- . ........|+++ ++|.++ .| +.+|.++++ +++.+.+... .....
T Consensus 248 ~-gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~--gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T 321 (459)
T PRK05965 248 L-GILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLT--SGYVPMGAVLMS-DHVYQGIADGAGAAAPVGHGYT 321 (459)
T ss_pred c-CCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhc--cCCcceeEEEEc-HHHHHHHhccccccccccccCC
Confidence 9 99999999998641 1 112233578886 579995 35 369999997 7887766421 11112
Q ss_pred CCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
....|..+..+.+.++.+++ ..++..+....+.+.|+++. .+|. +.+.++.|.++.+.+..+.
T Consensus 322 ~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-----~~~~----------v~~vrG~Gl~~gie~~~~~ 386 (459)
T PRK05965 322 YSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-----AHPL----------VGDVRGRGLLGALELVADK 386 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-----cCCC----------EEEEeecceEEEEEEeccc
Confidence 23467777766666654432 23333344444444444321 0111 1233566778888874211
Q ss_pred ----------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 316 ----------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 316 ----------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+...++.+.+...++-+.. .....||+.+.+..++++++.+.+
T Consensus 387 ~~~~~~~~~~~~~~~i~~~~~~~Gll~~~---------------------------~g~~~i~~~PpL~it~~ei~~~~~ 439 (459)
T PRK05965 387 ATKTPFDAALDPADRIFDRAYANGLVFRA---------------------------FGDGVLGFAPALCCTEGEFDLIFE 439 (459)
T ss_pred cccCCCCchhHHHHHHHHHHHhCCeEEEe---------------------------cCCcEEEEECCCcCCHHHHHHHHH
Confidence 1234444444333322211 013678888777777776666666
Q ss_pred HHHH
Q psy12791 386 ALRK 389 (393)
Q Consensus 386 al~~ 389 (393)
++.+
T Consensus 440 ~l~~ 443 (459)
T PRK05965 440 RTRK 443 (459)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=117.96 Aligned_cols=285 Identities=16% Similarity=0.138 Sum_probs=165.8
Q ss_pred CCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH---hc-C---C-CCeEEEcCCCccchHHHHHHhccc-----
Q psy12791 57 NNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH---LL-S---A-GDHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~---~~-~---~-gd~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
.++...+|.+.|++.... +...+.+||++|+ .++.. .. . + ..+|+.-...|++.......+...
T Consensus 81 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 160 (422)
T PRK05630 81 THEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMH 160 (422)
T ss_pred CCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccccc
Confidence 456678899999988643 3577788999987 44421 11 1 2 246888888887643211111110
Q ss_pred --CC---cEEEeeCCC--------C----HHHHHhhcCCCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEEE
Q psy12791 121 --IG---LEVDFVDLR--------K----IENLIKYIKPNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILLV 178 (393)
Q Consensus 121 --~g---~~v~~~~~~--------d----~~~l~~~l~~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~li 178 (393)
++ ..+..+|.. + .+.+++.+.+++.+|+++.. +...|...+ +++|.++|+++ |+++|
T Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~-g~llI 239 (422)
T PRK05630 161 SLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH-DILLI 239 (422)
T ss_pred ccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEE
Confidence 00 112222221 1 23445555567889999874 777788775 88999999999 99999
Q ss_pred EeCccCcccc-c-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH------HHhcCCCCCHHHH
Q psy12791 179 LDNTFLTAYY-Q-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL------QNSMGVVPSPFDC 245 (393)
Q Consensus 179 vDea~~~~~~-~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 245 (393)
+||++..+-- . .......|++ +++|.++| | ..+|+++++ +++.+.+... ........+|..+
T Consensus 240 ~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~g--G~~p~~av~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla~ 314 (422)
T PRK05630 240 ADEIATGFGRTGELFATLAAGVTPDIM--CVGKALTG--GFMSFAATLCT-DKVAQLISTPNGGGALMHGPTFMANPLAC 314 (422)
T ss_pred EecceeCCCcCchhhHHHhcCCCCCee--eeechhhc--Cccccceeecc-HHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence 9999965311 1 1112346777 67899853 3 248888887 7887766421 1111223456666
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
..+...++.+.+ ..++..+....+.+.|+.+. .+|. +.+.++.|.++.+.+. ++.....+.+
T Consensus 315 aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~-----~~~~----------v~~vRg~Gl~~~ie~~-~~~~~~~~~~ 378 (422)
T PRK05630 315 AVAHASLEIIETGMWRKQVKRIEAELIAGLSPLA-----HLPG----------VADVRVLGAIGVVEME-QPVDMEEATQ 378 (422)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-----cCCC----------eeeeeccccEEEEEEC-CcccHHHHHH
Confidence 666555544432 23344444444555444211 0111 1223566788999984 3223344544
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...++-+.. ..+.+||.+.+..++++++.+.++|++..
T Consensus 379 ~~~~~Gl~~~~----------------------------~g~~l~~~PpL~it~~~i~~~~~~l~~al 418 (422)
T PRK05630 379 AAVDHGVWLRP----------------------------FGRLVYVMPPYITTSEQIAQICAALAAAV 418 (422)
T ss_pred HHHHCCeEEEe----------------------------cCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 44333322210 02578999998888888888888887653
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=129.01 Aligned_cols=320 Identities=15% Similarity=0.081 Sum_probs=183.8
Q ss_pred CCCCC-CCCCCCCc-cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHH--Hhc
Q psy12791 22 DQWRS-QCVIPPII-LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVT--HLL 94 (393)
Q Consensus 22 ~~~~~-~~~~~p~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~--~~~ 94 (393)
..++| .++...++ ..+.+.+++.+++......+++..+...+|.++|++++. .+...+++||++|. .++. ...
T Consensus 585 ~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~ 664 (972)
T PRK06149 585 RSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAA 664 (972)
T ss_pred CEEEECCCCccccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHh
Confidence 45667 33333344 334555444443332222334455777889999999873 45688889999986 4443 122
Q ss_pred CCCCeEEEcCCCccchHHHHHHhc-c---cCCc------EEEeeC--------C--CC-----HHHHHhhc------CCC
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVA-P---KIGL------EVDFVD--------L--RK-----IENLIKYI------KPN 143 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~-~---~~g~------~v~~~~--------~--~d-----~~~l~~~l------~~~ 143 (393)
...++|+..+..|++.......+. . ..+. .+..++ . ++ .+++++.+ .++
T Consensus 665 tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 744 (972)
T PRK06149 665 SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG 744 (972)
T ss_pred cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCc
Confidence 334568877777775321111110 0 0000 111121 1 11 13333322 135
Q ss_pred CcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-cccC------CCCCcCcEEEEcccccccCCCC
Q psy12791 144 TKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YYQK------SLPWGVDIVLYSLTKYMNGHSD 212 (393)
Q Consensus 144 ~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~~~------~~~~~~di~~~S~sK~~~G~~G 212 (393)
+.+|+++......|.+.+ +++|.++|++| |+++|+||++..+ -... ......||+ +++|.++ .|
T Consensus 745 iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg--~G 819 (972)
T PRK06149 745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMG--NG 819 (972)
T ss_pred eEEEEEcccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCccchhhhhcCCCCCEE--Eeccccc--CC
Confidence 778888888888888887 99999999999 9999999999542 2111 122346887 6789995 35
Q ss_pred ceEEEEEecChHHHHHHHHHHH-hcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCC
Q psy12791 213 VVMGATVTNDDSLQARLKFLQN-SMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHP 285 (393)
Q Consensus 213 ~r~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~ 285 (393)
+.+|+++++ +++.+.+..... ......+|..+..+.+.++.+++ ..++..+.-..+.+.|++ ++.+
T Consensus 820 ~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i------ 892 (972)
T PRK06149 820 HPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLI------ 892 (972)
T ss_pred eeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCe------
Confidence 679999997 788877653111 11234577777777666654432 122333333444444443 2222
Q ss_pred CCCCCcchHHHhhhcCCCcceEEEEEcC-------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 286 GLPSHPNHELAKSQWSGTSGMLSFYVNG-------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
.+.+|.|.++.+.+.. +.+....+.+.+...++-+...
T Consensus 893 ------------~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~----------------------- 937 (972)
T PRK06149 893 ------------GAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT----------------------- 937 (972)
T ss_pred ------------EEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec-----------------------
Confidence 2235667888888731 2334556666655444333221
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
|...+.|||...+..++++++.+.++|++.
T Consensus 938 --g~~~~vl~~~Ppl~it~~~id~~~~~l~~~ 967 (972)
T PRK06149 938 --GDHLNILKIKPPLCLDRESADFFVDMLDRV 967 (972)
T ss_pred --CCCCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 112467888888888888888777777654
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-11 Score=110.70 Aligned_cols=276 Identities=12% Similarity=0.018 Sum_probs=174.6
Q ss_pred chHHHHHHHHHHHhCCC---cEEEeccHHH-HH-HHHHHhcCCCCeEE-EcCCCccchHHHHHHhcccCCcEEEeeCC--
Q psy12791 59 PTRRNLERCIASLEEAK---HGLCYSSGLG-AV-TAVTHLLSAGDHII-SGDDVYGGTYRYFAQVAPKIGLEVDFVDL-- 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~---~~i~~~~G~~-al-~~~~~~~~~gd~vl-~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-- 130 (393)
....++++.|.++++.+ +.+++++|.+ ++ .+.+.++.+||+++ +..-.+.+. .+...++.+| ++..+..
T Consensus 49 ~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~--r~~~ea~~~g-~v~~~~~~~ 125 (364)
T PRK12462 49 SLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSR--KAIGEASRVA-AMRVVWDGA 125 (364)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHH--HHHHHHHhcC-CceEecCcC
Confidence 45677888888899985 3555555555 47 66778889999655 444443332 3455566666 4433321
Q ss_pred -------CCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEEEEc
Q psy12791 131 -------RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIVLYS 202 (393)
Q Consensus 131 -------~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~~~S 202 (393)
.+++++ .+.++.+.|.+++-...||+..| ++.+.+ ++++|+|.+.+.+. .|++. ..|+++.+
T Consensus 126 ~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~-~~llvvD~sS~~~s--~pid~~~~dvi~ag 195 (364)
T PRK12462 126 ASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLP-DSPLIADMSSDFMS--RPFDVEAYGMVYAH 195 (364)
T ss_pred CCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccC-CCeEEEEcCchhhC--CCCChHHccEEEee
Confidence 134444 33456789999999999999997 333446 89999999887543 34443 34999999
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHHH------------hcCCCCCHHHHHHHHhcc-----C--CHHHHHHHHH
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQN------------SMGVVPSPFDCWLVTRGL-----K--TLPCRLKEHE 263 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~ 263 (393)
..|.+ |+|| ++.++.+ ++++++...... ....+++....+.+...+ + .++.+.+++.
T Consensus 196 sQKnl-gP~G--ltvvivs-~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~ 271 (364)
T PRK12462 196 AQKNL-GPAG--VTVAIIR-RALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINA 271 (364)
T ss_pred ccccC-CCCc--eEEEEEC-HHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 99999 6999 7888887 777766532110 011223333333222221 2 4566677788
Q ss_pred HHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc-eEEEEEcCCHHHHHHHHHhcCccccccccCCcccccc
Q psy12791 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-MLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLAD 342 (393)
Q Consensus 264 ~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~ 342 (393)
+.++.+.++++..+++... +. . + ...+. -+.|.+ .+++....|++..+..++..--|..
T Consensus 272 ~ka~~ly~~id~~~~~~~~--~~-~--~---------~~RS~mnv~f~~-~~~~l~~~f~~~a~~~gl~~lkGhr----- 331 (364)
T PRK12462 272 RKAAMLYATLDALNEVIDC--HA-H--R---------AARSTMNVAFRF-RQPRLDTLFKEQSTEAGFCGLSGHR----- 331 (364)
T ss_pred HHHHHHHHHHHhCCCcccC--CC-C--h---------hhcCcceEEEEc-CCHHHHHHHHHHHHHCCCccccCCc-----
Confidence 8888999999876642211 10 0 0 00112 266677 4778888999888765544322211
Q ss_pred CcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 343 LPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+.+|+|+--.-+.+.+++|.+-+++..
T Consensus 332 --------------------~vgg~Ras~yna~~~e~v~~L~~fm~~f~ 360 (364)
T PRK12462 332 --------------------SIGGIRASLYNAVSEQAVSRLCAFLKDFA 360 (364)
T ss_pred --------------------ccCceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 13669999987788888999998887654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-11 Score=114.23 Aligned_cols=286 Identities=16% Similarity=0.129 Sum_probs=164.2
Q ss_pred CCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh---c----CC-CCeEEEcCCCccchHHHHHHhcc-----
Q psy12791 56 SNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL---L----SA-GDHIISGDDVYGGTYRYFAQVAP----- 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~---~----~~-gd~vl~~~~~y~~~~~~~~~~~~----- 119 (393)
+.++...+|.+.|++..+.. ...+.+||++|+ .++... . .+ ..+|+.-..+|++.......+..
T Consensus 94 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~ 173 (453)
T PRK06943 94 CTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFK 173 (453)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhh
Confidence 34567778888888877643 466778899987 544321 0 12 35788888888774311110000
Q ss_pred -cCC---cEEEeeCCC-----------------CHHHHHhhcC---CCCcEEEEec-CCCCcccccC----HHHHHHHHH
Q psy12791 120 -KIG---LEVDFVDLR-----------------KIENLIKYIK---PNTKMVWIEN-PTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 120 -~~g---~~v~~~~~~-----------------d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~~----~~~l~~l~~ 170 (393)
.++ ..+..++.. +++++++.+. +++.+|+++. .+...|.+.+ +++|.++|+
T Consensus 174 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~ 253 (453)
T PRK06943 174 DAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCD 253 (453)
T ss_pred cccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHH
Confidence 000 012222211 2456666663 4678999988 4777788775 899999999
Q ss_pred hCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH------HHhcC
Q psy12791 171 QHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL------QNSMG 237 (393)
Q Consensus 171 ~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~------~~~~~ 237 (393)
+| |+++|+||++..+ -.. .......|+++ ++|.++ .| +.+|.++++ +++.+.+... .....
T Consensus 254 ~~-gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~--gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~T 327 (453)
T PRK06943 254 RY-GVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGIS--GGYLPLSLVLSR-DAIFAAFYDDDVTRGFLHSHS 327 (453)
T ss_pred Hc-CCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhc--cCcccceEEEEc-HHHHHhhcccCccCCccCCCC
Confidence 99 9999999998763 111 11233578886 579995 35 469999987 7887766421 01111
Q ss_pred CCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
...++..+..+.+.++.+.+ ..++..+..+.+.+.|+++. .++. +.+.++.|.++.+.+..+.
T Consensus 328 ~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-----~~~~----------v~~vrG~Gl~~gvel~~~~ 392 (453)
T PRK06943 328 YTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-----AHPQ----------VRHLRQRGTIFAFDVALDG 392 (453)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-----cCCC----------EEeEeccccEEEEEEccCC
Confidence 12467777666666654432 23334444445555554321 0111 1123566788888884221
Q ss_pred ----HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 316 ----EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ----~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....++...+...++-+.. ..+.+|+++.+..++++++.+.++|++.
T Consensus 393 ~~~~~~~~~i~~~~~~~Gll~~~----------------------------~g~~l~~~Ppl~it~~eid~~~~~l~~a 443 (453)
T PRK06943 393 DAARTFSRRFFEAALERELLLRP----------------------------IGTTVYLMPPYVLDDDEIAWLAERTRAT 443 (453)
T ss_pred CcchHHHHHHHHHHHHCCcEEEe----------------------------cCCEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 2234454444333322211 0245888877777777777666666543
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-11 Score=114.21 Aligned_cols=212 Identities=13% Similarity=0.086 Sum_probs=134.1
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhc---------ccCCc-
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVA---------PKIGL- 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~---------~~~g~- 123 (393)
+++...+|.+.|++..+.+...+.+||++|. .++.. .....++|+.-...|++......... ...|.
T Consensus 113 ~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~ 192 (453)
T PRK07046 113 PSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQV 192 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCC
Confidence 4566677888888887766788889999986 44432 23345678888888877432111110 01111
Q ss_pred -----EEEeeCCCCHHHHHhhcC-CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCc----cccc
Q psy12791 124 -----EVDFVDLRKIENLIKYIK-PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLT----AYYQ 189 (393)
Q Consensus 124 -----~v~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~----~~~~ 189 (393)
.+..++.+|++.+++.+. ++..+|+++..+...|.+.| ++++.++|+++ |+++|+||++.. +-.+
T Consensus 193 ~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~tfr~g~Gg~~ 271 (453)
T PRK07046 193 HDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRY-GTLLVIDETHTISSGPGGYT 271 (453)
T ss_pred ccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEccccCccCCcchh
Confidence 245566679999999885 35788999888877788776 89999999999 999999999861 1111
Q ss_pred CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH------H-hc--CCCCCHHHHHHHHhccCCHH--HH
Q psy12791 190 KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ------N-SM--GVVPSPFDCWLVTRGLKTLP--CR 258 (393)
Q Consensus 190 ~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~------~-~~--~~~~~~~~~~~~~~~~~~~~--~~ 258 (393)
.......|+++ ++|.++ .|+.+|.++++ +++.+.+.... . .. ....++..+..+...++.+. ..
T Consensus 272 ~~~gv~PDi~t--~gK~lg--gG~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~ 346 (453)
T PRK07046 272 RAHGLEPDFLV--VGKPIA--GGVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA 346 (453)
T ss_pred HHhCCCcccee--ehhhhc--CCCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH
Confidence 11223468875 789995 35779999987 78888764210 0 11 11235666665555544332 12
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12791 259 LKEHERGSIEVAKFLE 274 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~ 274 (393)
.++..+..+.+.+.|+
T Consensus 347 ~~~~~~~g~~l~~~L~ 362 (453)
T PRK07046 347 YAHMLALAARLAAGLR 362 (453)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445555554
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-11 Score=114.54 Aligned_cols=304 Identities=14% Similarity=0.055 Sum_probs=170.5
Q ss_pred CeeeeCCCCCCCCCc---cccCCCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHHh--c----C-C-CCeEEE
Q psy12791 37 TTFKQNTPGQPPQGF---EYSRSNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTHL--L----S-A-GDHIIS 102 (393)
Q Consensus 37 ~~~~~~~~~~~~~~~---~y~~~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~~--~----~-~-gd~vl~ 102 (393)
+.+.+++.+++.... .+..+.++...+|.+.|++.... +...+.+||++|+ .++... . . + ..+|+.
T Consensus 69 p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~ 148 (461)
T PRK07482 69 TEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIIS 148 (461)
T ss_pred HHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 445555544433321 12234567778899999887643 3566778999987 544321 1 1 2 356887
Q ss_pred cCCCccchHHHHHHhc------ccCC---cEEEeeCCC------------------CHHHHHhhcC----CCCcEEEEec
Q psy12791 103 GDDVYGGTYRYFAQVA------PKIG---LEVDFVDLR------------------KIENLIKYIK----PNTKMVWIEN 151 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~------~~~g---~~v~~~~~~------------------d~~~l~~~l~----~~~~~v~l~~ 151 (393)
-...|++.......+. ..++ ..+..++.. +++.+++.+. +++.+|+++.
T Consensus 149 ~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP 228 (461)
T PRK07482 149 RWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEP 228 (461)
T ss_pred ecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 7788876321111100 0011 112222111 2456666663 3578999988
Q ss_pred CCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCc-eEEEEEe
Q psy12791 152 PTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDV-VMGATVT 220 (393)
Q Consensus 152 p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~ 220 (393)
.+...|.+.+ +++|.++|++| |+++|+||++..+ -.. .......|+++ ++|.++| |+ .+|.+++
T Consensus 229 vqg~gG~~~~~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g--G~~Pi~av~~ 303 (461)
T PRK07482 229 VLGTGGIVPPPAGYWPAIQAVLKKY-DILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTS--AYAPLSGSIV 303 (461)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--Ecccccc--Cccccceeee
Confidence 8877788875 88999999999 9999999999864 111 11233578886 6799952 42 5888888
Q ss_pred cChHHHHHHHHH-------HHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHh----hCCCcceEeCCCC
Q psy12791 221 NDDSLQARLKFL-------QNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLE----SHPCVKGVLHPGL 287 (393)
Q Consensus 221 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~----~~~~~~~v~~~~l 287 (393)
+ +++.+.+... ........+|..++.+...++.+.+ ..++..+..+.+.+.|+ .++.+.
T Consensus 304 ~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~------- 375 (461)
T PRK07482 304 G-EKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVG------- 375 (461)
T ss_pred c-HHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEE-------
Confidence 7 7777766421 0111223467777777666654432 22333333444444443 233222
Q ss_pred CCCcchHHHhhhcCCCcceEEEEEcCCH----------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 288 PSHPNHELAKSQWSGTSGMLSFYVNGGA----------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
+.++.|.++.+.+..+. ....++...+...++-...+
T Consensus 376 -----------~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---------------------- 422 (461)
T PRK07482 376 -----------EVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAM---------------------- 422 (461)
T ss_pred -----------EEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecC----------------------
Confidence 22556778888884211 11234444433322221100
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....+|+.+.+..++++++.+.+++++.
T Consensus 423 ----~~~~~i~~~Ppl~it~~ei~~~~~~l~~~ 451 (461)
T PRK07482 423 ----PHGDILGFAPPLVLTRAEADEIVAIAKDA 451 (461)
T ss_pred ----CCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 01357888888888887777666666543
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-11 Score=115.29 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=165.9
Q ss_pred CCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hc-----CCCCeEEEcCCCccchHHHHHHhcc-------
Q psy12791 57 NNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LL-----SAGDHIISGDDVYGGTYRYFAQVAP------- 119 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~-----~~gd~vl~~~~~y~~~~~~~~~~~~------- 119 (393)
.++...+|.+.|++.... +...+.+||++|+ .++.. .. ....+|+.-..+|++.......+..
T Consensus 84 ~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~ 163 (428)
T PRK07986 84 THPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHS 163 (428)
T ss_pred CCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhh
Confidence 456778888899888754 3466778899986 44432 11 2245788888888763211111100
Q ss_pred cCC---cEEEeeCC-----------CCHHHHHhhcC---CCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEE
Q psy12791 120 KIG---LEVDFVDL-----------RKIENLIKYIK---PNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILL 177 (393)
Q Consensus 120 ~~g---~~v~~~~~-----------~d~~~l~~~l~---~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~l 177 (393)
.++ ..+..++. .|++++++.+. ++..+|+++.. +...|...+ +++|.++|+++ |+++
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~-g~lL 242 (428)
T PRK07986 164 LYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE-GILL 242 (428)
T ss_pred ccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEE
Confidence 000 11122221 24566776664 35678888874 666676553 89999999999 9999
Q ss_pred EEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHH-----HhcCCCCCHHHH
Q psy12791 178 VLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQ-----NSMGVVPSPFDC 245 (393)
Q Consensus 178 ivDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 245 (393)
|+||++..+ ... .......|+++ ++|.++ .| +.+|.++++ +++.+.+.... .......+|..+
T Consensus 243 I~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~--gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~ 317 (428)
T PRK07986 243 IADEIATGFGRTGKLFACEHAGIAPDILC--LGKALT--GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLAC 317 (428)
T ss_pred EEeccccCCccCCCeeeecccCCCCCEEE--echhhh--CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHH
Confidence 999998643 111 11223467774 889994 35 457887887 78888775311 111112457777
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
+.+...++.+++ ..++..+..+.+.+.|+.+.. ++. +.+.++.|.++.+.+. ++.....+.+
T Consensus 318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~----------i~~vRg~Gl~~~ve~~-~~~~~~~~~~ 381 (428)
T PRK07986 318 AVANASLSLLESGDWQQQVAAIEAQLREELAPLRD-----APM----------VADVRVLGAIGVVETT-RPVNMAALQR 381 (428)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-----CCC----------EEeEeccceEEEEEeC-CcccHHHHHH
Confidence 666666554432 344455555555555553210 111 1223556778888884 3333455555
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+...++-+.. ..+.||+.+.+..++++++.+.++|.+.
T Consensus 382 ~l~~~Gl~~~~----------------------------~g~~i~~~Ppl~it~~ei~~~~~~l~~~ 420 (428)
T PRK07986 382 FFVEQGVWIRP----------------------------FGKLIYLMPPYIILPEQLQRLTAAVNRA 420 (428)
T ss_pred HHHHCCcEEEe----------------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 55443332211 0257899888888888888877777654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-11 Score=114.45 Aligned_cols=286 Identities=16% Similarity=0.124 Sum_probs=163.3
Q ss_pred CCchHHHHHHHHHHHhC-CC--cEEEeccHHHHH-HHHHHhc------C-C-CCeEEEcCCCccchHHHHHHhcc-----
Q psy12791 57 NNPTRRNLERCIASLEE-AK--HGLCYSSGLGAV-TAVTHLL------S-A-GDHIISGDDVYGGTYRYFAQVAP----- 119 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~-~~--~~i~~~~G~~al-~~~~~~~------~-~-gd~vl~~~~~y~~~~~~~~~~~~----- 119 (393)
..+...+|.+.|.+.+. .+ ...+.+||++|. .++.... . + .++|+..+..|++....-..+..
T Consensus 131 ~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~ 210 (504)
T PLN02760 131 TTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALH 210 (504)
T ss_pred CcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhc
Confidence 45667788888888753 32 467789999987 5443221 1 2 25688888778764311111010
Q ss_pred -cCCc---EEEeeCCC----------C--------HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHH
Q psy12791 120 -KIGL---EVDFVDLR----------K--------IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVV 169 (393)
Q Consensus 120 -~~g~---~v~~~~~~----------d--------~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~ 169 (393)
.++. .+..++.+ + .+++++.+. +++.+|+++......|.+.| +++|.++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 1110 12222211 1 134555542 34778999988888898888 99999999
Q ss_pred HhCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-------HHhc
Q psy12791 170 KQHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSM 236 (393)
Q Consensus 170 ~~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~ 236 (393)
+++ |+++|+||++..+ ... ......+|++ +++|.++| ..+.+|.++++ +++.+.+... ....
T Consensus 291 ~~~-g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~lgg-G~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~ 365 (504)
T PLN02760 291 KKY-DILFIADEVICAFGRLGTMFGCDKYNIKPDLV--SLAKALSS-AYMPIGAVLVS-PEISDVIHSQSNKLGSFAHGF 365 (504)
T ss_pred HHc-CCEEEecchhhCCcccchhhHHHhcCCCCcEE--EecccccC-CccccceEeec-HHHHhhhhcccccccCcccCC
Confidence 999 9999999999643 211 1122346765 57899953 11358888887 8888876421 1111
Q ss_pred CCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
....+|..+..+.+.++.+++ ..++..+....+.+.|+.+.. ++. +.+.+|.|.++.+.+..+
T Consensus 366 T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~-----~~~----------v~~vrG~Gl~~gie~~~~ 430 (504)
T PLN02760 366 TYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSG-----SPI----------IGEIRGTGLILGTEFVDN 430 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-----CCC----------eeeEEeCceEEEEEEecC
Confidence 223367777777666654432 344444555555555554210 111 122356678888887421
Q ss_pred H----------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 315 A----------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 315 ~----------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
. +....+.+.+...++-+.. ....+|+++.+..++++++.+.
T Consensus 431 ~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----------------------------~g~~lrl~Ppl~it~eeid~~~ 482 (504)
T PLN02760 431 KSPNDPFPAEWGVGAYFGAECKKRGMLVRV----------------------------AGDNIMMSPPLIITPEEVDELI 482 (504)
T ss_pred CcccccccchhHHHHHHHHHHHhCCcEEEe----------------------------cCCEEEEECCCCCCHHHHHHHH
Confidence 1 1233444444332322110 1246899988777777777776
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
+++.+.
T Consensus 483 ~~l~~a 488 (504)
T PLN02760 483 SIYGKA 488 (504)
T ss_pred HHHHHH
Confidence 666543
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=114.39 Aligned_cols=277 Identities=13% Similarity=0.021 Sum_probs=176.7
Q ss_pred chHHHHHHHHHHHhCCC---cEEEe-ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC--C-
Q psy12791 59 PTRRNLERCIASLEEAK---HGLCY-SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD--L- 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~---~~i~~-~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~--~- 130 (393)
....+.++.|.++++.+ +.+++ ++|+.++ .++..++.+||++++....+.+. .+.+.++.+|...+... .
T Consensus 52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~--r~~~~a~~~g~~~~~~~~~~~ 129 (365)
T PLN02452 52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSK--KAAKEAKKYCKTNVIASGKDE 129 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHHhCCCcEEEecCCC
Confidence 45678888999999975 35555 4445567 77778888999887766555443 35566777776443331 1
Q ss_pred -----CCHHHHHhhcCCCCcEEEEecCCCCcccc-cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEEEEcc
Q psy12791 131 -----RKIENLIKYIKPNTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIVLYSL 203 (393)
Q Consensus 131 -----~d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~~~S~ 203 (393)
.++++++ ..++.+.|.+++-...||+. .|++++. ++++|+|.+.+.+.. +++. ..++...|.
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~-------~~~lvVDa~Ss~g~~--pidv~~~~v~~~sa 198 (365)
T PLN02452 130 KYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVG-------NVPLVADMSSNFLSK--PVDVSKYGVIYAGA 198 (365)
T ss_pred CCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccC-------CCeEEEECCccccCc--ccCHHHcCEEEEec
Confidence 1445442 23468899999999999995 6665542 479999999986654 4432 233455799
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHH------------hcCCCCCHHHHHHHHhccC------CHHHHHHHHHHH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQN------------SMGVVPSPFDCWLVTRGLK------TLPCRLKEHERG 265 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 265 (393)
+|.+ |++| +|+++.+ +++++++..... .+-.+++....+.+...++ .++.+.++..+.
T Consensus 199 qK~l-GP~G--l~~v~vr-~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~ 274 (365)
T PLN02452 199 QKNV-GPSG--VTIVIIR-KDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRK 274 (365)
T ss_pred cccc-CCCC--eEEEEEc-HHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999 7999 8999998 777766532110 0011222222222222222 355667777888
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
++.+.++|++.+++. .+... +. .+ ....+.|.++ +.+..+.|++.++..++....|..
T Consensus 275 a~~l~~~l~~~~G~y---~~~~~--~~-------~r-s~~~vsF~~~-~~~~~~~f~~~~~~~g~~~~~G~r-------- 332 (365)
T PLN02452 275 ADLLYDAIDESNGFY---VCPVE--KS-------VR-SLMNVPFTLG-GSELEAEFVKEAAKAGMVQLKGHR-------- 332 (365)
T ss_pred HHHHHHHHHhCCCcc---cCCCC--hH-------Hh-CCeEEEEEcC-CchhHHHHHHHHHHCCCcccCCcc--------
Confidence 889999998766541 11000 00 01 1346888885 446888999998876655544321
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.-+-+|+|+=-.-+.+.+++|.+.+++..
T Consensus 333 -----------------~~gg~R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 333 -----------------SVGGMRASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred -----------------ccCceEEECcCCCCHHHHHHHHHHHHHHH
Confidence 01239999987788889999999988764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-11 Score=114.81 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=124.6
Q ss_pred CCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHHh--c-----CCCCe-EEEcCCCccchHHHHHHhcc-----c
Q psy12791 57 NNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTHL--L-----SAGDH-IISGDDVYGGTYRYFAQVAP-----K 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~~--~-----~~gd~-vl~~~~~y~~~~~~~~~~~~-----~ 120 (393)
..+...+|.++|+++.+. +..++++||++|+ .++... . ++++. |+.-..+|++....-..+.. .
T Consensus 96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~ 175 (460)
T PRK12403 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE 175 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence 356678899999998763 4688889999997 544322 1 23344 44445566653211111100 0
Q ss_pred CC---cEEEeeCCC-----------------CHHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhC
Q psy12791 121 IG---LEVDFVDLR-----------------KIENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQH 172 (393)
Q Consensus 121 ~g---~~v~~~~~~-----------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~ 172 (393)
.+ -.+..+|.. +.+++++.+. +++.+|+++..+...|.+.+ +++|.++|++|
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~ 255 (460)
T PRK12403 176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY 255 (460)
T ss_pred cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 00 012233211 1244544441 35778899888888898887 99999999999
Q ss_pred CCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHH----HhcCCCCC
Q psy12791 173 PDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQ----NSMGVVPS 241 (393)
Q Consensus 173 ~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~----~~~~~~~~ 241 (393)
|+++|+||++..+ -.. .......|+++ ++|.++| |. .+|.++++ +++.+.+.... .......+
T Consensus 256 -g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lgg--G~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gn 329 (460)
T PRK12403 256 -DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTS--GYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGH 329 (460)
T ss_pred -CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccc--cccceEEEEEC-HHHHHHHhcCCCccccCCCCCCC
Confidence 9999999999753 111 11223468886 8899952 42 58888887 77777664211 11122356
Q ss_pred HHHHHHHHhccCCHHH--HHHHHH-HHHHHHHHHHh
Q psy12791 242 PFDCWLVTRGLKTLPC--RLKEHE-RGSIEVAKFLE 274 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~~~l~ 274 (393)
|..++.+.+.++.+++ ..++.. +..+.+.+.|+
T Consensus 330 Pl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~ 365 (460)
T PRK12403 330 PVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLR 365 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 7777777666655432 233442 34445555444
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-10 Score=113.28 Aligned_cols=216 Identities=15% Similarity=0.114 Sum_probs=129.3
Q ss_pred CCCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh--c----C-C-CCeEEEcCCCccchHHHHHHhcc----
Q psy12791 55 RSNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL--L----S-A-GDHIISGDDVYGGTYRYFAQVAP---- 119 (393)
Q Consensus 55 ~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~--~----~-~-gd~vl~~~~~y~~~~~~~~~~~~---- 119 (393)
.+.++...+|.+.|++....+ ...+.+||++|+ .++... . . + ..+|+.....|++.......+..
T Consensus 88 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~ 167 (460)
T PRK06105 88 HKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNN 167 (460)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccc
Confidence 345677788999999887543 466678899987 444321 1 1 2 34677777777764311111000
Q ss_pred --cCC---cEEEeeCCC------------------CHHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHH
Q psy12791 120 --KIG---LEVDFVDLR------------------KIENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAV 168 (393)
Q Consensus 120 --~~g---~~v~~~~~~------------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l 168 (393)
.++ ..+..++.. ..+++++.+. ++..+|+++..+...|...+ +++|.++
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~l 247 (460)
T PRK06105 168 HRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAV 247 (460)
T ss_pred ccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 011 112223221 1345666552 35788999988888888887 9999999
Q ss_pred HHhCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-------Hh
Q psy12791 169 VKQHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-------NS 235 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-------~~ 235 (393)
|++| |+++|+||++..+ ... .......|++ +++|.++| ..+.+|+++++ +++.+.+.... ..
T Consensus 248 c~~~-~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~--~~gK~lgg-G~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 248 LRKY-DILLVADEVICGFGRTGNMFGCETFGIKPDIL--VMSKQLSS-SYQPLSAVLMN-EKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred HHHc-CCeEEEeccccCCCcCchhhhHHhcCCCCCee--eeeccccc-CcccceEEEEc-HHHHHHHhcccccCcccccC
Confidence 9999 9999999999642 211 1122346777 57799953 22468999987 78877664311 11
Q ss_pred cCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh
Q psy12791 236 MGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES 275 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~ 275 (393)
.....+|..+..+.+.++.+.+ ..++..+..+.+.+.|++
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~ 364 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRA 364 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 2224567777766666655432 344444455555555543
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-11 Score=114.07 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=161.8
Q ss_pred CCCchHHHHHHHHHHHhCCC-----cEEEe-ccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhccc------
Q psy12791 56 SNNPTRRNLERCIASLEEAK-----HGLCY-SSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPK------ 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~-----~~i~~-~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~~------ 120 (393)
+.++...+|.++|.+..... ..+++ +||++|+ .++.. ......+|+.-...|++.......+...
T Consensus 103 ~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~ 182 (464)
T PRK06938 103 LTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKP 182 (464)
T ss_pred cCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCcccccc
Confidence 45667777888888765422 23354 5999987 44432 2233457888788887743222211100
Q ss_pred CC---cEEEeeCCC-----------------CHHHHHhhcCC------CCcEEEEecCCCCcccccC----HHHHHHHHH
Q psy12791 121 IG---LEVDFVDLR-----------------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 121 ~g---~~v~~~~~~-----------------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~----~~~l~~l~~ 170 (393)
++ ..+..++.. +++.+++.+.+ ++.+|+++..+...|.+.| ++++.++|+
T Consensus 183 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~ 262 (464)
T PRK06938 183 LGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE 262 (464)
T ss_pred CCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 00 123333321 14556666642 4788999888877788775 899999999
Q ss_pred hCCCcEEEEeCccCccc------ccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 171 QHPDILLVLDNTFLTAY------YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 171 ~~~~~~livDea~~~~~------~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
++ |+++|.||++..+- .........|+++ ++|.++ .|+.+|.++++ +++ +.+...........++..
T Consensus 263 ~~-giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglg--gG~PlsAv~~~-~~~-~~~~~~~~~~T~~gnpla 335 (464)
T PRK06938 263 EA-GIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIG--GSLPLAVVVYR-EWL-DTWQPGAHAGTFRGNQMA 335 (464)
T ss_pred Hc-CCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eecccc--CCCceEEEeeh-hHh-hccCCCCCCCCCCcCHHH
Confidence 99 99999999988641 1112234578886 579995 36789999987 554 433211111122345677
Q ss_pred HHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC----
Q psy12791 245 CWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG---- 314 (393)
Q Consensus 245 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 314 (393)
+..+.+.++.+.+ ..++..+..+.+.+.|++ +|.+. +.+|.|.++.+.+..+
T Consensus 336 ~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~------------------~VrG~Glm~gie~~~~~~~~ 397 (464)
T PRK06938 336 MAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLG------------------DVRGRGLMLGVEIVDPQGEP 397 (464)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCee------------------eeeccceEEEEEeccCcccc
Confidence 7666666654432 223333333344444432 22222 2356678888888421
Q ss_pred ---------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 315 ---------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 315 ---------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
.+....+...+...++.+..+ |...+.||+.+.+..++++++.+.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-------------------------g~~~~~l~~~Ppl~it~~eid~~~~ 452 (464)
T PRK06938 398 DALGHPPANGELASLIQRECLRRGLILELG-------------------------GRHGSVVRFLPPLIITAEQIDEVAE 452 (464)
T ss_pred cccccCCccHHHHHHHHHHHHHCCeEEeec-------------------------CCCCCEEEEECCCccCHHHHHHHHH
Confidence 122344444443333322111 1114678998888888888877777
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
++++.
T Consensus 453 ~l~~~ 457 (464)
T PRK06938 453 IFAEA 457 (464)
T ss_pred HHHHH
Confidence 66544
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=115.25 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=163.3
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHHh--c-----CC-CCeEEEcCCCccchHHHHHHhcc-----
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTHL--L-----SA-GDHIISGDDVYGGTYRYFAQVAP----- 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~~--~-----~~-gd~vl~~~~~y~~~~~~~~~~~~----- 119 (393)
+.++...+|.++|++.... +...+.+||++|+ .++... . ++ ..+|+.-...|++.......+..
T Consensus 84 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~ 163 (429)
T PRK06173 84 FTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGM 163 (429)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhh
Confidence 3466778888999887643 3577778899987 444221 1 12 35688888888763211100000
Q ss_pred --cCC---cEEEeeCCC-----------CHHHHHhhcC---CCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCc
Q psy12791 120 --KIG---LEVDFVDLR-----------KIENLIKYIK---PNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDI 175 (393)
Q Consensus 120 --~~g---~~v~~~~~~-----------d~~~l~~~l~---~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~ 175 (393)
.++ ..+..+|.. +++.+++.+. +++.+|+++.. +...|...+ +++|.++|++| |+
T Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~-g~ 242 (429)
T PRK06173 164 HGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY-GV 242 (429)
T ss_pred hhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc-CC
Confidence 000 012233321 3555666663 45788999885 777788765 89999999999 99
Q ss_pred EEEEeCccCccccc-------CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-----HHhcCCCCCH
Q psy12791 176 LLVLDNTFLTAYYQ-------KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-----QNSMGVVPSP 242 (393)
Q Consensus 176 ~livDea~~~~~~~-------~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 242 (393)
++|+||++.. +.. .......|+++ ++|.++ .| +.++.++.+ +++.+.+... ........+|
T Consensus 243 llI~DEv~tG-~GrtG~~~a~~~~gv~PDiv~--~gK~l~--gG~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~T~~g~p 316 (429)
T PRK06173 243 LLIFDEIATG-FGRTGKLFALEHAGVVPDIMC--IGKALT--GGYLTLSATITT-EAIAQTICSGEAKCFMHGPTFMANP 316 (429)
T ss_pred eEEecchhcC-CCcCCcchHHHhcCCCCCEEE--eehhhh--CCccccceEEec-HHHHHHHhcCCCCccccCCCCCcCH
Confidence 9999999954 221 11223467776 889994 34 347888877 7777766321 1111122457
Q ss_pred HHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 243 FDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 243 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
..+..+...++.+.+ ..++..+..+.+.+.|+.... ++. +.+.++.|.++.+.+. ++.....
T Consensus 317 ~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~-----~~~----------v~~vRg~Gl~~~iel~-~~~~~~~ 380 (429)
T PRK06173 317 LACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAE-----FDS----------VAEVRVLGAIGVVEMK-EPVNMAT 380 (429)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCC----------eeeeeccceEEEEEeC-CcccHHH
Confidence 777776666655432 344555555566666653211 111 0112445778889884 4434455
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+.+.+...++.+... .+.|||.+.+.-++++++.+.++|++
T Consensus 381 i~~~l~e~Gi~v~~~----------------------------g~~l~~~Ppl~it~~ei~~~~~~l~~ 421 (429)
T PRK06173 381 LQPRFVEHGIWVRPF----------------------------GKLVYIMPPFIISPDELSQLTSGLLR 421 (429)
T ss_pred HHHHHHHCCeEEEec----------------------------CCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 655554434332110 24677777777666666666655554
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=112.54 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=158.7
Q ss_pred CCCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhccc------CC-
Q psy12791 55 RSNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPK------IG- 122 (393)
Q Consensus 55 ~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~------~g- 122 (393)
++.++...+|.++|+++.+.. ...+.+||++|+ .++. .......+|+.-...|++.......+... ++
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 188 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGP 188 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCC
Confidence 456778889999999987543 466667788887 4432 12233467877777776643111111100 00
Q ss_pred --cEEEeeCC--------CC--------HHHHHhhcC--CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEE
Q psy12791 123 --LEVDFVDL--------RK--------IENLIKYIK--PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVL 179 (393)
Q Consensus 123 --~~v~~~~~--------~d--------~~~l~~~l~--~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~liv 179 (393)
..+..++. .+ ++.+++.+. +++.+|+++..++..+.+.| +++|.++|+++ |+++|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~-g~llI~ 267 (459)
T PRK06082 189 LMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKH-NVLLII 267 (459)
T ss_pred CCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHc-CCEEEE
Confidence 01222221 11 244666664 35778888888776433445 89999999999 999999
Q ss_pred eCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Q psy12791 180 DNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL 252 (393)
Q Consensus 180 Dea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
||++..+ -.. .......|+++ ++|.++| | +.+|.++++ +++.+.............+|..+..+.+.+
T Consensus 268 DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~g--G~~P~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L 342 (459)
T PRK06082 268 DEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGG--GLVPIAAMITK-DKYNTAAQISLGHYTHEKSPLGCAAALATI 342 (459)
T ss_pred echhhCCCccchhhHhHhhCCCCCEEE--ecccccC--CCCcceEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHH
Confidence 9998853 111 11223578886 7899952 4 468888887 665543321000112234677766666665
Q ss_pred CCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-------HHHHHHHH
Q psy12791 253 KTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-------EETRIFLE 323 (393)
Q Consensus 253 ~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 323 (393)
+.+.+ ..++..+..+.+.+.|+++.. .++. +.+.+|.|.++.+.+..+. +....+..
T Consensus 343 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~----------i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~ 408 (459)
T PRK06082 343 EVIEQEGLLEKVKADSQFMRERLLEMKA----KYPL----------IGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLY 408 (459)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHh----hCCC----------eeeeeeccceeEEEEccCccccCccHHHHHHHHH
Confidence 54432 334444445555555543210 0010 1123556788888884211 22333433
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.+...++-+.. ...+.+|+++.+..++++++.+.+++++
T Consensus 409 ~~~~~Gvl~~~---------------------------~~~~~i~~~Ppl~it~~eid~~~~~l~~ 447 (459)
T PRK06082 409 RCLNNGLSFKV---------------------------SQGNVIQLSPPLIITREELTQALAILEE 447 (459)
T ss_pred HHHhCCCEEEe---------------------------cCCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence 33222221110 0146789988777666666666665553
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=111.53 Aligned_cols=284 Identities=14% Similarity=0.150 Sum_probs=164.7
Q ss_pred CCCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc----------
Q psy12791 55 RSNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP---------- 119 (393)
Q Consensus 55 ~~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~---------- 119 (393)
.+.++...+|.++|+++... +...+.+||++|. .++.. ......+|+.....|++..........
T Consensus 91 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~ 170 (451)
T PRK06062 91 AHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTG 170 (451)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCC
Confidence 34567778899999887643 3567778889887 44432 223345788888888764322211110
Q ss_pred cCCcEEEeeCC---------CC-------HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCc
Q psy12791 120 KIGLEVDFVDL---------RK-------IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDI 175 (393)
Q Consensus 120 ~~g~~v~~~~~---------~d-------~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~ 175 (393)
..|......|. +| ++++++.+. +++.+|+++..+...|.+.| +++|.++|+++ |+
T Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~-g~ 249 (451)
T PRK06062 171 RAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH-GI 249 (451)
T ss_pred CCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CC
Confidence 01111111111 12 456666663 34789999988888898888 99999999999 99
Q ss_pred EEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH--HHhcCCCCCHHHHH
Q psy12791 176 LLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL--QNSMGVVPSPFDCW 246 (393)
Q Consensus 176 ~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 246 (393)
++|+||++..+- . ........|++ +++|.++| | +.+|.++++ +++.+.+... ........+|..+.
T Consensus 250 lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~--t~gK~lgg--G~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnpl~~A 324 (451)
T PRK06062 250 VLIADEVMAGFGRTGKWFAIEHFGVVPDLI--TFAKGVNS--GYVPLGGVAIS-EAIAATFADRPYPGGLTYSGHPLACA 324 (451)
T ss_pred EEEeeccccCCCcCcHHHHHHhcCCCCCee--eechhhhc--CCcCcEEEEEc-HHHHHHhccCCCCCCCCCCCCHHHHH
Confidence 999999998631 1 11122346766 57899952 4 258888887 6787766421 11111223577777
Q ss_pred HHHhccCCHHH--HHHHHHHHH-HHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH----
Q psy12791 247 LVTRGLKTLPC--RLKEHERGS-IEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA---- 315 (393)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~~~-~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 315 (393)
.+.+.++.+++ ..++..+.. ..+.+.|++ ++.+. +.++.|.++.|.+..+.
T Consensus 325 aa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~------------------~vrG~Gl~~gve~~~~~~~~~ 386 (451)
T PRK06062 325 AAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVG------------------EVRGLGVFWALELVADRETRE 386 (451)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEE------------------eEeccccEEEEEEcccccccC
Confidence 66666655432 122222222 233334432 22221 22455677777773211
Q ss_pred ---------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 316 ---------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 316 ---------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
.....+.+.+...++-.. ...+.+|+++.+..++++++.+.++
T Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~Gvl~~----------------------------~~~~~lrl~ppl~~t~~eid~~~~~ 438 (451)
T PRK06062 387 PLAPYGASSAAMAAVKAACKERGLLPF----------------------------VNGNRIHVVPPCTVTEDEVREGLAI 438 (451)
T ss_pred CCcccchhhHHHHHHHHHHHHCCcEEe----------------------------ecCCEEEEECCccCCHHHHHHHHHH
Confidence 123444444443332110 0136799999888888888777777
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
+++.
T Consensus 439 l~~~ 442 (451)
T PRK06062 439 LDAA 442 (451)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-10 Score=110.47 Aligned_cols=287 Identities=16% Similarity=0.083 Sum_probs=162.2
Q ss_pred CCCchHHHHHHHHHHHhC---CCcEEEeccHHHHH-HHHHH---hc----CCC-CeEEEcCCCccchHHHHHHhccc---
Q psy12791 56 SNNPTRRNLERCIASLEE---AKHGLCYSSGLGAV-TAVTH---LL----SAG-DHIISGDDVYGGTYRYFAQVAPK--- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~---~~~~i~~~~G~~al-~~~~~---~~----~~g-d~vl~~~~~y~~~~~~~~~~~~~--- 120 (393)
+.++...++.++|++..+ .+...+.+||++|+ .++.. .. ++| .+|+.-...|++.......+...
T Consensus 83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~ 162 (449)
T PRK07481 83 TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF 162 (449)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence 356777889999998874 23466778889887 44432 11 123 56888888887743211111000
Q ss_pred ---CC---cEEEeeC--------CC--CHHH--------HHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHH
Q psy12791 121 ---IG---LEVDFVD--------LR--KIEN--------LIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAV 168 (393)
Q Consensus 121 ---~g---~~v~~~~--------~~--d~~~--------l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l 168 (393)
++ ..+..++ .+ |++. +++.+. +++.+|+++..+...|.+.+ +++|.++
T Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l 242 (449)
T PRK07481 163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242 (449)
T ss_pred ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence 00 1122221 11 3333 233332 45889999988888888776 8999999
Q ss_pred HHhCCCcEEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-------HH
Q psy12791 169 VKQHPDILLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-------QN 234 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~ 234 (393)
|+++ |+++|.||++..+- . ........|+++ ++|.++| | +.+|.++++ +++.+.+... ..
T Consensus 243 c~~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h 316 (449)
T PRK07481 243 CDRH-GILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITS--GYVPLGATMVN-ARIADAFEANADFGGAIMH 316 (449)
T ss_pred HHHc-CCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccC--CCcCceEEEEc-HHHHHHHhccCcccccccc
Confidence 9999 99999999988631 1 111233578876 5799852 4 358999987 7887776421 11
Q ss_pred hcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
......+|..+..+.+.++.+.+ ..++..+..+.+.+.|+++.. .++ .+.+.++.|.++.+.+.
T Consensus 317 ~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~----------~i~~vrG~Glm~gi~l~ 382 (449)
T PRK07481 317 GYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKE----RFE----------LVGDVRGKGLMLALDLV 382 (449)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh----cCC----------CeEEEeecceEEEEEec
Confidence 11122457776666665554432 234444444455555543210 001 01123556778888873
Q ss_pred CC----------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 313 GG----------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 313 ~~----------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
.+ .+....+...+...++-+.. ....+||+..+..++++++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~----------------------------~g~~i~l~Ppl~it~~eid~ 434 (449)
T PRK07481 383 ADKATREPIDPSKGYANAVADVARENGVLVRP----------------------------SGTKIILSPPLVIQREDVDR 434 (449)
T ss_pred ccccccCCCCchhHHHHHHHHHHHhCCeEEEe----------------------------cCCEEEEECCCCCCHHHHHH
Confidence 21 12233444443332322211 02357888888777787777
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
+.+++++.
T Consensus 435 ~~~~l~~~ 442 (449)
T PRK07481 435 IVDALDAG 442 (449)
T ss_pred HHHHHHHH
Confidence 77777654
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-11 Score=119.41 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=116.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
++....+.++.+|+.+|++...+++||++. + .++.+++.+||.|++++.+|-+.+ +.+...|+..++++..
T Consensus 193 ~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 193 HSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT----HLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccc
Confidence 345678899999999999999999999886 7 778889999999999999998743 3567889999998653
Q ss_pred ------------CHHHHHhhcCCC--Cc---EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----
Q psy12791 132 ------------KIENLIKYIKPN--TK---MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ----- 189 (393)
Q Consensus 132 ------------d~~~l~~~l~~~--~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~----- 189 (393)
+.+.+++++... .+ .+++++|+ --|.+.++++|.++++.+ + +++|||++.....
T Consensus 269 ~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd~~~I~~~~~~~-~--ilvDEAwgah~~F~p~~~ 344 (714)
T PRK15400 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFIKKTLDVK-S--IHFDSAWVPYTNFSPIYE 344 (714)
T ss_pred cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecCHHHHHHHhCCC-C--EEEEccchhhhccCcccC
Confidence 267888887542 33 78999995 669999999999999988 7 6899999873321
Q ss_pred --CCCCCcC---c--EEEEcccccccCCC
Q psy12791 190 --KSLPWGV---D--IVLYSLTKYMNGHS 211 (393)
Q Consensus 190 --~~~~~~~---d--i~~~S~sK~~~G~~ 211 (393)
.++..++ | +++.|.||.++|+.
T Consensus 345 ~~sam~~ga~~~~~i~vtQStHKtL~alT 373 (714)
T PRK15400 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFS 373 (714)
T ss_pred CcChhhcCCCCCCceEEEEchhhcccchh
Confidence 1222344 4 99999999986543
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-10 Score=110.46 Aligned_cols=212 Identities=13% Similarity=0.029 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHH-HHHh-c---------cc
Q psy12791 57 NNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRY-FAQV-A---------PK 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~-~~~~-~---------~~ 120 (393)
+++...+|.+.|.+..+.. ...+.+||++|+ .++.. ......+|+.-..+|++.... +... . ..
T Consensus 91 ~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~ 170 (433)
T PRK00615 91 TSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHL 170 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCC
Confidence 4566777888888877543 577788999987 44432 122335677777777763211 0000 0 00
Q ss_pred C-----CcEEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 121 I-----GLEVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 121 ~-----g~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
. ......++.+|++++++.+. ++..+|+++......|.+.| +++|.++|++| |+++|+||++..+-.
T Consensus 171 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~R~ 249 (433)
T PRK00615 171 VDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT-GSLSIMDEVVTGFRV 249 (433)
T ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcccccccc
Confidence 0 01123345557888887764 34678888888888888887 56999999999 999999999964311
Q ss_pred c-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-hc--CCCCCHHHHHHHHhccCCHHH--H
Q psy12791 189 Q-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-SM--GVVPSPFDCWLVTRGLKTLPC--R 258 (393)
Q Consensus 189 ~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~--~ 258 (393)
. .......|+++ ++|.++ .|+.+|+++++ +++.+.+..... .. ....+|..+..+++.++.+++ .
T Consensus 250 G~~ga~~~~gv~PDi~~--~gK~lg--gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~ 324 (433)
T PRK00615 250 AQGGAAAIYHVKPDITV--YGKILG--GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF 324 (433)
T ss_pred cHhHHHHhcCCCCCeEE--Eccccc--CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH
Confidence 1 11223467765 789995 34568999987 888887642111 11 122466676666665544321 3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12791 259 LKEHERGSIEVAKFLE 274 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~ 274 (393)
+++..+..+.+.+.|+
T Consensus 325 ~~~~~~~g~~l~~~l~ 340 (433)
T PRK00615 325 YTQLSTLEQNFLSPIE 340 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444445544444
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-10 Score=109.10 Aligned_cols=213 Identities=16% Similarity=0.146 Sum_probs=135.5
Q ss_pred CCCchHHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcc----------cC
Q psy12791 56 SNNPTRRNLERCIASLEE-AKHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAP----------KI 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~----------~~ 121 (393)
++++...++.++|++... .+...+.+||++|+ .++.. ......+|+.-...|++.......... ..
T Consensus 90 ~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PRK12389 90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 169 (428)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence 345667788888887664 34577788999987 44431 223345788878888774322111100 01
Q ss_pred C------cEEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 122 G------LEVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 122 g------~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
| ..+..++.+|++.+++.+. +++.+|+++...+..|.+.| +++|.++|+++ |+++|+||++..+-.
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~Rt 248 (428)
T PRK12389 170 GVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEA-GALVIYDEVITAFRF 248 (428)
T ss_pred CCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEcccccccc
Confidence 1 1345566668888888774 35788999988888898888 99999999999 999999999986411
Q ss_pred c-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH---HhcCCCCCHHHHHHHHhccCCHH--HH
Q psy12791 189 Q-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ---NSMGVVPSPFDCWLVTRGLKTLP--CR 258 (393)
Q Consensus 189 ~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~ 258 (393)
. .......|++ +++|.++ .|+.+|.++++ +++.+.+.... .......+|..+..+.+.++.+. ..
T Consensus 249 ~~~~a~~~~gv~PDiv--t~gK~lg--gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l 323 (428)
T PRK12389 249 MYGGAQDLLGVEPDLT--ALGKIIG--GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGV 323 (428)
T ss_pred CcchhhHHhCCCCCee--eechhhc--CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccH
Confidence 1 1122346776 6789995 35678998887 88888764211 11112346777666665554432 23
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12791 259 LKEHERGSIEVAKFLE 274 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~ 274 (393)
.++..+..+++.+.|+
T Consensus 324 ~~~~~~~g~~l~~~L~ 339 (428)
T PRK12389 324 YEKLDRLGAMLEEGIL 339 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555555554
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-13 Score=119.56 Aligned_cols=166 Identities=22% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCC---CccchHHHHHHhcccCCcEEEeeCCC---CHH
Q psy12791 62 RNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDD---VYGGTYRYFAQVAPKIGLEVDFVDLR---KIE 134 (393)
Q Consensus 62 ~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~---~y~~~~~~~~~~~~~~g~~v~~~~~~---d~~ 134 (393)
..+++.++++.|++++++++|.++|+ .++.++ .+|.+|+++.- .+++.|+ +..+.+..|+++++|-.. .++
T Consensus 50 ~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~l-a~~~EvIvsRGelVeiGgsFR-ip~vm~~sGa~lvEVGttN~t~~~ 127 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALVVNNNAAAVLLALNTL-AKGKEVIVSRGELVEIGGSFR-IPDVMRQSGARLVEVGTTNRTHLS 127 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 45778889999999999999999997 544444 45778888864 4555553 566778889999988664 588
Q ss_pred HHHhhcCCCCcEEEEecCCCCccc----ccCHHHHHHHHHhCCCcEEEEeCccCccc------------ccCCCCCcCcE
Q psy12791 135 NLIKYIKPNTKMVWIENPTNPLMT----VFDVKAISAVVKQHPDILLVLDNTFLTAY------------YQKSLPWGVDI 198 (393)
Q Consensus 135 ~l~~~l~~~~~~v~l~~p~nptG~----~~~~~~l~~l~~~~~~~~livDea~~~~~------------~~~~~~~~~di 198 (393)
+++++++++|.+++-.|++|-.-. -.+++++.+++++| ++++++|...+... ....+..|+|+
T Consensus 128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDl 206 (367)
T PF03841_consen 128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADL 206 (367)
T ss_dssp ---------------------------------HHHHHHHHH-T--EEEE-TTHHHHHHHTT----------CCCCT-SE
T ss_pred cccccccccccccccccccccccccccccccHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCE
Confidence 999999999999988888887432 33699999999999 99999998764321 11224468999
Q ss_pred EEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 199 ~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+++|.-|.++|| . .|.++++ ++++++++..+-
T Consensus 207 V~fSGdKlLGGP-Q--aGiI~Gk-k~lI~~lk~~pl 238 (367)
T PF03841_consen 207 VTFSGDKLLGGP-Q--AGIIVGK-KELIEKLKKHPL 238 (367)
T ss_dssp EEEETTSSSSS--S---EEEEEE-HHHHHHHHHHHH
T ss_pred EEEECCCcCCCC-C--eEEEEeC-HHHHHHHhhCCC
Confidence 999999999664 3 8999998 999999987654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-10 Score=108.29 Aligned_cols=285 Identities=15% Similarity=0.120 Sum_probs=159.5
Q ss_pred CCCchHHHHHHHHHHHhCCC----cEEEe-ccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhccc------C
Q psy12791 56 SNNPTRRNLERCIASLEEAK----HGLCY-SSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPK------I 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~----~~i~~-~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~~------~ 121 (393)
+.++...+|.+.|++..... ..+++ +||++|+ .++.. .....++|+.-...|++.......+... +
T Consensus 98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~ 177 (459)
T PRK06931 98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV 177 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence 45667778888888876422 23455 6999987 44432 2334567888888887754332221110 0
Q ss_pred ---CcEEEeeCCCC-------------HHH----HHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHh
Q psy12791 122 ---GLEVDFVDLRK-------------IEN----LIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 122 ---g~~v~~~~~~d-------------~~~----l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~ 171 (393)
...+..+|..+ .+. +++.+. +++.+|+++..+...|.+.+ ++++.++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~ 257 (459)
T PRK06931 178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK 257 (459)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 11233333221 122 222222 24788999888877788775 8999999999
Q ss_pred CCCcEEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 172 HPDILLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 172 ~~~~~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+ |+++|+||++..+- . ........|+++ ++|.++ .|+.+|.++.+ +++ +.+...........+|..+
T Consensus 258 ~-g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~--gG~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla~ 330 (459)
T PRK06931 258 H-GILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVG--GGLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLAM 330 (459)
T ss_pred c-CCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--eccccc--CCcceeeeeeH-HHH-hhccCCCCCCCCCCCHHHH
Confidence 9 99999999988641 1 112234578875 679995 35779988876 553 4442111111223467777
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG----- 314 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 314 (393)
..+.+.++.+.+ ..++..+..+.+.+.|++ +|.+. +.+|.|.++.+.+..+
T Consensus 331 aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~------------------~vrG~Glm~giel~~~~~~~~ 392 (459)
T PRK06931 331 ATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIG------------------NVRGRGLMIGIEIVDERQPAD 392 (459)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeE------------------eEecCceEEEEEEccCccccc
Confidence 666666554322 223333333444444432 33222 2356678888887421
Q ss_pred --------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 315 --------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 315 --------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
.+....+...+...++-+... +...+.+|+.+.+..++++++.+.++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-------------------------~~~~~~l~~~Ppl~it~~eid~~~~~ 447 (459)
T PRK06931 393 AMGSYPADGELAAAIQKACFENGLLLERG-------------------------GRNGNVVRLLPPLLITQAECEEFIDR 447 (459)
T ss_pred ccccCCccHHHHHHHHHHHHHCCcEEeec-------------------------CCCCCEEEEECCCCcCHHHHHHHHHH
Confidence 122334444433323222111 11146799988888888777766666
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
+++.
T Consensus 448 l~~~ 451 (459)
T PRK06931 448 FEQA 451 (459)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-10 Score=109.00 Aligned_cols=213 Identities=12% Similarity=0.089 Sum_probs=125.3
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHHh--c----C-C-CCeEEEcCCCccchHHHHHHhccc----
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTHL--L----S-A-GDHIISGDDVYGGTYRYFAQVAPK---- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~~--~----~-~-gd~vl~~~~~y~~~~~~~~~~~~~---- 120 (393)
+..+...+|.+.|++.... +...+.+||++|. .++... . . + ..+|+.-...|++.......+...
T Consensus 87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~ 166 (466)
T PRK07030 87 FSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFT 166 (466)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCcccc
Confidence 3456777888888887642 3567778888886 444321 1 1 2 356888888887643111111000
Q ss_pred --CC---cEEEeeCCC-----------------CHHHHHhhcC---CCCcEEEEec-CCCCcccccC----HHHHHHHHH
Q psy12791 121 --IG---LEVDFVDLR-----------------KIENLIKYIK---PNTKMVWIEN-PTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 121 --~g---~~v~~~~~~-----------------d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~~----~~~l~~l~~ 170 (393)
++ ..+..+|.. +++++++.+. +++.+|+++. .+...|.+.+ +++|.++|+
T Consensus 167 ~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~ 246 (466)
T PRK07030 167 ETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACD 246 (466)
T ss_pred ccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHH
Confidence 00 012223221 2445566653 4578888887 5777788775 889999999
Q ss_pred hCCCcEEEEeCccCccc-cc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-------HHhc
Q psy12791 171 QHPDILLVLDNTFLTAY-YQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-------QNSM 236 (393)
Q Consensus 171 ~~~~~~livDea~~~~~-~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~~~ 236 (393)
++ |+++|+||++..+- .. .......|+++ ++|.++ .| +.+|.++++ +++.+.+... ....
T Consensus 247 ~~-g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~--gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~h~~ 320 (466)
T PRK07030 247 RY-GVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALT--GGYLPLAAVLTT-DTVYQAFYDDYPTLRAFLHSH 320 (466)
T ss_pred Hc-CCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhcc--CCcccceEEEec-HHHHHHHhcccccccccccCC
Confidence 99 99999999987531 11 12234578886 579995 36 369999987 7887766321 1111
Q ss_pred CCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHh
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLE 274 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~ 274 (393)
....++..+..+...++.+.+ ..++..+.-..+.+.|+
T Consensus 321 T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~ 360 (466)
T PRK07030 321 SYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATA 360 (466)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 122467777766666554432 22333333344444444
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-10 Score=113.12 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=117.8
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.....+.++.+|+.+|++...+++||++. + .++.+++.+||.|++++.+|-+.+ +.+...|+..++++..
T Consensus 193 ~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----~aLilsga~PVYl~P~~n~ 268 (713)
T PRK15399 193 HTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA----HLLMMSDVVPIWLKPTRNA 268 (713)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeeEEecccccc
Confidence 345677889999999999999999999886 7 788889999999999999998743 3567889999998653
Q ss_pred -------C-----HHHHHhhcCCC-----CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---
Q psy12791 132 -------K-----IENLIKYIKPN-----TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--- 191 (393)
Q Consensus 132 -------d-----~~~l~~~l~~~-----~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--- 191 (393)
+ .+.+++++.+. ++++++++|+ --|.+.++++|.+.+. . .++++|||++......+
T Consensus 269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~g-~--~~ilvDEAhgah~~F~p~~~ 344 (713)
T PRK15399 269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTLD-V--PSIHFDSAWVPYTHFHPIYQ 344 (713)
T ss_pred cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHhC-C--CEEEEeccchhhhhcCcccC
Confidence 2 37787777532 3689999996 6699999999999882 2 24579999987332212
Q ss_pred ----CCC--cCcEE---EEcccccccCCCCceEEEEEec
Q psy12791 192 ----LPW--GVDIV---LYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 192 ----~~~--~~di~---~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
+.. ++|.+ +.|.||.++|+.. ..++-.+
T Consensus 345 ~~sam~~~~~aD~~i~~tQStHKtL~alTQ--aS~iHvk 381 (713)
T PRK15399 345 GKSGMSGERVPGKVIFETQSTHKMLAAFSQ--ASLIHIK 381 (713)
T ss_pred CcChhhCCCCCCeeeeeeeehhccccccch--heeeeec
Confidence 212 46766 9999999976654 5665554
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=105.77 Aligned_cols=291 Identities=13% Similarity=0.038 Sum_probs=165.1
Q ss_pred CCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh--c-----CC-CCeEEEcCCCccchHHHHHHhcccC---
Q psy12791 56 SNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL--L-----SA-GDHIISGDDVYGGTYRYFAQVAPKI--- 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~--~-----~~-gd~vl~~~~~y~~~~~~~~~~~~~~--- 121 (393)
+..+...+|.+.|++..... ...+.+||++|+ .++... . .+ ..+|+.-...|++............
T Consensus 71 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~ 150 (447)
T PRK06917 71 FTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRR 150 (447)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 45677788999999887543 466678999987 544321 1 12 3578888888877543222211100
Q ss_pred --------CcEEEeeCC------C---------CHHHHHhhcC----CCCcEEEEecCCCC-cccccC----HHHHHHHH
Q psy12791 122 --------GLEVDFVDL------R---------KIENLIKYIK----PNTKMVWIENPTNP-LMTVFD----VKAISAVV 169 (393)
Q Consensus 122 --------g~~v~~~~~------~---------d~~~l~~~l~----~~~~~v~l~~p~np-tG~~~~----~~~l~~l~ 169 (393)
+......|. + +++.+++.+. +++.+|+++..... .|.+.+ +++|.++|
T Consensus 151 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc 230 (447)
T PRK06917 151 QRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEIC 230 (447)
T ss_pred ccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHH
Confidence 111111111 0 2345555553 35788999876653 456655 88999999
Q ss_pred HhCCCcEEEEeCccCccc-cc-----CCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHHH--hc--CC
Q psy12791 170 KQHPDILLVLDNTFLTAY-YQ-----KSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQN--SM--GV 238 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~-~~-----~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~~--~~--~~ 238 (393)
+++ |+++|+||++..+- .. .......|++ +++|.++ .|+ .+|.++++ +++.+.+..... .. ..
T Consensus 231 ~~~-g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~--~~gK~l~--~G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~~T~ 304 (447)
T PRK06917 231 DHY-DILFIADEVMTGLGRTGAMFAMEHWGVEPDIM--TLGKGLG--AGYTPIAATVVS-DRVMEPILRGSRSIMSGHTL 304 (447)
T ss_pred HHc-CCEEEEechhhCcCcccchhhHHhcCCCCCEE--Eeeehhc--cCCcceEEEEEc-HHHHHHHhccCcccccccCC
Confidence 999 99999999987531 11 1122346776 4689995 343 58998887 788776642111 11 12
Q ss_pred CCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 239 VPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
..++..+..+.+.++.+.. ..++..+..+.+.+.|++ ++.+. +.++.|.++.+.+.
T Consensus 305 ~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vrG~Gl~~~ie~~ 366 (447)
T PRK06917 305 SANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIG------------------DVRGKGLLIGVEFV 366 (447)
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEE------------------EEeecceEEEEEEe
Confidence 3457776666665554432 234444444445554443 22222 22456778888773
Q ss_pred CC----------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 313 GG----------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 313 ~~----------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
.+ .+....+.+.+...++-+...+.. ..|...+.+|+++.+..++++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--------------------~~g~~~~~i~l~Ppl~it~~eid~ 426 (447)
T PRK06917 367 ADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAG--------------------QDGKEGDAVIIAPPMTITYSELDE 426 (447)
T ss_pred ccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccc--------------------cCCCCCCEEEEECCCcCCHHHHHH
Confidence 11 123455555544434332211000 001124689999988888888888
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
+.+++.+.
T Consensus 427 ~~~~l~~~ 434 (447)
T PRK06917 427 LLSIFAKS 434 (447)
T ss_pred HHHHHHHH
Confidence 77777654
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-10 Score=108.83 Aligned_cols=213 Identities=18% Similarity=0.155 Sum_probs=125.4
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hc----C-CC-CeEEEcCCCccchHHHHHHhc------
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LL----S-AG-DHIISGDDVYGGTYRYFAQVA------ 118 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~----~-~g-d~vl~~~~~y~~~~~~~~~~~------ 118 (393)
+.++...+|.++|++.... +...+.+||++|+ .++.. .. . +| .+|+.-...|++....-....
T Consensus 91 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~ 170 (456)
T PRK07480 91 TTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMH 170 (456)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhh
Confidence 4567788899999988753 3577789999986 44421 11 1 23 467777777776431110000
Q ss_pred ccCCc---EEEeeCCC---------------C--HHHHHhhc----CCCCcEEEEecCCCCcccccC----HHHHHHHHH
Q psy12791 119 PKIGL---EVDFVDLR---------------K--IENLIKYI----KPNTKMVWIENPTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 119 ~~~g~---~v~~~~~~---------------d--~~~l~~~l----~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~ 170 (393)
...+. .+..++.. + ++.+++.+ .+++.+|+++..+...|.+.+ +++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~ 250 (456)
T PRK07480 171 EQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICR 250 (456)
T ss_pred cccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 00111 12222211 1 24454444 245789999988888888876 999999999
Q ss_pred hCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHH----HHHhcCCC
Q psy12791 171 QHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKF----LQNSMGVV 239 (393)
Q Consensus 171 ~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~----~~~~~~~~ 239 (393)
+| |+++|+||++..+ -.. .......|++ +++|.++| |+ .+|.++++ +++.+.+.. ........
T Consensus 251 ~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv--~~gK~l~g--G~~Pi~av~~~-~~i~~~~~~~~~~~~~~~T~~ 324 (456)
T PRK07480 251 KY-DILLVADEVICGFGRTGEWFGSQHFGIKPDLM--TIAKGLTS--GYIPMGAVGVG-DRVAEVLIEEGGEFNHGFTYS 324 (456)
T ss_pred Hc-CCEEEEechhhCCCcCcchhhhhhcCCCCCee--eeehhhcc--CCccceEEEEc-HHHHHHHhcCCCCcccCCCCC
Confidence 99 9999999999753 111 1122346776 46899853 42 58888887 788776631 11111223
Q ss_pred CCHHHHHHHHhccCCHHH--HHHHH-HHHHHHHHHHHh
Q psy12791 240 PSPFDCWLVTRGLKTLPC--RLKEH-ERGSIEVAKFLE 274 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~l~ 274 (393)
.+|..+..+.+.++.+.+ ..++. .+..+.+.+.|+
T Consensus 325 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~ 362 (456)
T PRK07480 325 GHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLR 362 (456)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 457777777666654432 22333 233444555554
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-11 Score=105.88 Aligned_cols=288 Identities=20% Similarity=0.139 Sum_probs=163.0
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHH-H-hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 53 YSRSNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVT-H-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 53 y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~-~-~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
.+-|-++...++.++|++.+-.+ -..+++||++|. .++. + +-...-.++.-..+|+++... .+...|.....
T Consensus 86 t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~---t~glt~~~~~k 162 (442)
T KOG1404|consen 86 TSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLY---TLGLTGLSPWK 162 (442)
T ss_pred eccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchh---hcccccCCccc
Confidence 34455677888888888876554 466778888886 3332 2 222233566666677654311 12222221111
Q ss_pred ------------eCCC---------C---------HHHHHhhc---CC-CCcEEEEecCCCCcccccC----HHHHHHHH
Q psy12791 128 ------------VDLR---------K---------IENLIKYI---KP-NTKMVWIENPTNPLMTVFD----VKAISAVV 169 (393)
Q Consensus 128 ------------~~~~---------d---------~~~l~~~l---~~-~~~~v~l~~p~nptG~~~~----~~~l~~l~ 169 (393)
.... + .+++++.+ .+ ...+.+.+..+...|.+.+ +++..++|
T Consensus 163 ~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v 242 (442)
T KOG1404|consen 163 QNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVV 242 (442)
T ss_pred ccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHH
Confidence 1100 0 13333333 22 3566777888888888875 89999999
Q ss_pred HhCCCcEEEEeCccCccc------ccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-HhcCCCCCH
Q psy12791 170 KQHPDILLVLDNTFLTAY------YQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-NSMGVVPSP 242 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~------~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-~~~~~~~~~ 242 (393)
+++ |.++|.||++..+- ....-+.-.||+ |++|.++ .|..+|.+++. +++.+.+.... .+..-...|
T Consensus 243 ~k~-Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiG--nG~Pl~AVvtt-~EIa~v~~~~~~~fnTyggnP 316 (442)
T KOG1404|consen 243 RKR-GGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIG--NGFPLGAVVTT-PEIADVLNQKSSHFNTYGGNP 316 (442)
T ss_pred HHc-CCEEEehhhhhccccccccccccccCCCccHH--HHHhhcc--CCCcceeeecC-HHHHHHHHhccccccccCCCc
Confidence 999 99999999998732 111111235666 7999994 45779999997 89999887655 333333456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhC-CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH------
Q psy12791 243 FDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA------ 315 (393)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 315 (393)
+.++.....++-+ +.+++.+++.....+|.+. ..+. -.+|- +-+.+|.|.|+-+++-.+.
T Consensus 317 ~a~avg~aVL~Vi--kee~LqE~aa~vG~yl~~~l~~l~-d~h~i----------IGdVRG~GLm~GvE~V~dk~~~~pp 383 (442)
T KOG1404|consen 317 VACAVGLAVLKVI--KEENLQENAAEVGSYLLEKLAALK-DKHPI----------IGDVRGRGLMLGVELVSDKSEPKPP 383 (442)
T ss_pred hhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHh-hcCCc----------eeecccceeEEEEEEecccCCCCCc
Confidence 6665555544433 3444555555554444320 0000 01111 1233666778888764322
Q ss_pred --HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 316 --EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 316 --~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.....+.+..+..++.+.-|+ .....+|++..+--|.++++.+.+..
T Consensus 384 ~~~~~~~i~~~cke~Gvlvg~g~-------------------------i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 384 ATAEGAVIGEQCKELGVLVGKGG-------------------------IHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred chHHHHHHHHHHHHhCeeeeccc-------------------------ccceEEEecCCeeccHHHHHHHHHHH
Confidence 223333333333343332222 22458999988888888887666644
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-10 Score=108.72 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=116.7
Q ss_pred CCCchHHHHHHHHHHHhCC-------CcEEEeccHHHHH-HHHHHh--c----C-C-CCeEEEcCCCccchHHHHHHhcc
Q psy12791 56 SNNPTRRNLERCIASLEEA-------KHGLCYSSGLGAV-TAVTHL--L----S-A-GDHIISGDDVYGGTYRYFAQVAP 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~-------~~~i~~~~G~~al-~~~~~~--~----~-~-gd~vl~~~~~y~~~~~~~~~~~~ 119 (393)
+.++...+|.+.|++.... +...+.+||++|+ .++... . . + ..+|+.-...|++..........
T Consensus 104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~ 183 (472)
T PRK08742 104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGD 183 (472)
T ss_pred cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccC
Confidence 3456677888888887642 2567778899986 444321 1 1 2 35788888888774321111100
Q ss_pred c------CC---cEEEeeCCC-----------------CHHHHHhhcC---CCCcEEEEec-CCCCcccccC----HHHH
Q psy12791 120 K------IG---LEVDFVDLR-----------------KIENLIKYIK---PNTKMVWIEN-PTNPLMTVFD----VKAI 165 (393)
Q Consensus 120 ~------~g---~~v~~~~~~-----------------d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~~----~~~l 165 (393)
. ++ ..+..+|.. +++.+++.+. +++.+|+++. .++..|.+.+ ++++
T Consensus 184 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 184 IPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred CcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 0 00 012223321 1345555553 4578888887 5777787765 8999
Q ss_pred HHHHHhCCCcEEEEeCccCccc-cc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH---H--
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAY-YQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL---Q-- 233 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~-~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~---~-- 233 (393)
.++|+++ |+++|+||++..+- .. .......|+++ ++|.++ .| +.+|.++++ +++.+.+... .
T Consensus 264 r~lc~~~-gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~--gG~~Plaav~~~-~ei~~~~~~~~~~~~~ 337 (472)
T PRK08742 264 RELCDAH-GAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLT--GGFLPLSAVLAT-QQLYDAFLDDSRERAF 337 (472)
T ss_pred HHHHHHc-CCEEEEechhhCCCCCccchHHHhcCCCCCEEE--Eccccc--CCCCCcceeecc-HHHHHHhhccCccCcc
Confidence 9999999 99999999988631 11 11223578886 579995 24 358888887 7887765321 0
Q ss_pred -HhcCCCCCHHHHHHHHhccCCH
Q psy12791 234 -NSMGVVPSPFDCWLVTRGLKTL 255 (393)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
.......++..+..+.+.++.+
T Consensus 338 ~h~~T~~gnpl~~Aaa~a~L~~i 360 (472)
T PRK08742 338 LHSHSYTGNPLACAAALATLDIF 360 (472)
T ss_pred CcCCCCCccHHHHHHHHHHHHHH
Confidence 1111224677776666655443
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-10 Score=108.32 Aligned_cols=285 Identities=17% Similarity=0.088 Sum_probs=165.7
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH-h--c----CC-CCeEEEcCCCccchHHHHHHhccc-----
Q psy12791 57 NNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH-L--L----SA-GDHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~-~--~----~~-gd~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
..+...++.+.|++..+.. ...+.++|++++ .++.. . . .+ ..+|+.-..+|++...........
T Consensus 86 ~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~ 165 (427)
T TIGR00508 86 THKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMH 165 (427)
T ss_pred CCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccc
Confidence 3456677888888876543 577778899886 44432 1 1 12 357888888887643221111010
Q ss_pred --CC---cEEEeeCC---------C--CHHHHHhhcC---CCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcE
Q psy12791 121 --IG---LEVDFVDL---------R--KIENLIKYIK---PNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDIL 176 (393)
Q Consensus 121 --~g---~~v~~~~~---------~--d~~~l~~~l~---~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~ 176 (393)
++ ..+..++. + |++++++.+. ++..+|+++.. ++..|...+ +++|.++|+++ |++
T Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~-~~l 244 (427)
T TIGR00508 166 SLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY-DIL 244 (427)
T ss_pred ccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCE
Confidence 00 01111111 1 3455666553 34678888875 666666553 89999999999 999
Q ss_pred EEEeCccCcccc-cC-----CCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHH-----HhcCCCCCHHH
Q psy12791 177 LVLDNTFLTAYY-QK-----SLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQ-----NSMGVVPSPFD 244 (393)
Q Consensus 177 livDea~~~~~~-~~-----~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 244 (393)
+|+||++..+.. .. ......|+++ ++|.++ .|+ .++.++.+ +++.+.++... .......++..
T Consensus 245 lI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~--gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~ 319 (427)
T TIGR00508 245 LIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALT--GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLA 319 (427)
T ss_pred EEEeccccCCCcCCccchhhhcCCCCCEEE--echhhh--cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHH
Confidence 999999854211 11 1223567775 799994 353 47777776 78877775311 11111235666
Q ss_pred HHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHH
Q psy12791 245 CWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322 (393)
Q Consensus 245 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
+..+.+.++.+. ...++..+...++.+.|+++.. ++. ....++.|.++.+.+. ++.....+.
T Consensus 320 ~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~----------i~~vrg~G~~~~i~~~-~~~~~~~~~ 383 (427)
T TIGR00508 320 CAVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-----NPV----------VKDVRVLGAIGVVEMY-KPVNVEELQ 383 (427)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCC----------EEeEeccccEEEEEEC-CccCHHHHH
Confidence 666555554332 2345555566666676664321 111 1122456788888884 333345555
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+++...++-+.. ....+|+++....++++++.+.+++++..
T Consensus 384 ~~l~~~Gv~~~~----------------------------~~~~l~~~ppl~~t~~~id~~~~~l~~~l 424 (427)
T TIGR00508 384 KKFVEQGVWIRP----------------------------FGKLIYVMPPYIITTEQLQKLTAALIEAL 424 (427)
T ss_pred HHHHHCCeEEEe----------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 555443322210 02468999999999999999998887653
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=105.70 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=136.5
Q ss_pred CCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH--hc----C-C-CCeEEEcCCCccchHHHHHHhcccC---
Q psy12791 56 SNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH--LL----S-A-GDHIISGDDVYGGTYRYFAQVAPKI--- 121 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~--~~----~-~-gd~vl~~~~~y~~~~~~~~~~~~~~--- 121 (393)
++++...+|.+.|++.... +...+.+||++|+ .++.. .. . + ..+|+.-...|++.......+....
T Consensus 92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~ 171 (466)
T PRK07036 92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR 171 (466)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence 3456677888888887643 3466678888886 44432 11 1 2 3578887777876431111111000
Q ss_pred ---C---cEEEeeCCCC-----------------HHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHH
Q psy12791 122 ---G---LEVDFVDLRK-----------------IENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVK 170 (393)
Q Consensus 122 ---g---~~v~~~~~~d-----------------~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~ 170 (393)
+ ..+..++..+ ++.+++.+. +++.+|+++..+...|.+.| +++|.++|+
T Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~ 251 (466)
T PRK07036 172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251 (466)
T ss_pred ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence 0 1122222211 223444432 45789999988888898887 999999999
Q ss_pred hCCCcEEEEeCccCcc-cc------cCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-------HHh
Q psy12791 171 QHPDILLVLDNTFLTA-YY------QKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-------QNS 235 (393)
Q Consensus 171 ~~~~~~livDea~~~~-~~------~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~~ 235 (393)
+| |+++|+||++..+ -. +.......|+++ ++|.++ .| +.+|.++++ +++.+.+... ...
T Consensus 252 ~~-g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~--gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~ 325 (466)
T PRK07036 252 RY-DILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLT--SGYQPLGAVIIS-ERLLDVISGPNAKGNVFTHG 325 (466)
T ss_pred Hc-CCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--Eccccc--cCccccEEEEEc-HHHHHHHhcccCcCcccccC
Confidence 99 9999999999753 11 112233568774 679995 25 358999987 8888776421 111
Q ss_pred cCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 236 MGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
.....+|..+..+...++.+.+ ..++..+..+.+.+.|+.+. .+|. +.+.++.|.++.+.+.
T Consensus 326 ~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~-----~~~~----------v~~vrG~Gl~~~ve~~ 389 (466)
T PRK07036 326 FTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLR-----ELPL----------VGDVRGDHLMACVECV 389 (466)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-----cCCC----------EEEEEeeceEEEEEEc
Confidence 1123467777766666655432 23444444445555554321 0111 1223566788888884
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=122.36 Aligned_cols=320 Identities=13% Similarity=0.037 Sum_probs=181.8
Q ss_pred CCCCC-CCCCCCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHH--Hhc
Q psy12791 22 DQWRS-QCVIPPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVT--HLL 94 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~--~~~ 94 (393)
..++| .++...++- .+.+.+++.+++.......++..+...++.++|++.+.. +...+++||++|. .++. ...
T Consensus 624 ~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~ 703 (1013)
T PRK06148 624 RAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH 703 (1013)
T ss_pred CEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 34566 333333332 233444443433322222355677888899999988754 3467889999987 4442 222
Q ss_pred CCCCeEEEcCCCccchHHHHHHh----cc-cCC----cEEEe--------eCCC--C-------HHHHHhhcC------C
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQV----AP-KIG----LEVDF--------VDLR--K-------IENLIKYIK------P 142 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~----~~-~~g----~~v~~--------~~~~--d-------~~~l~~~l~------~ 142 (393)
...++|+.....|++.......+ .+ ..+ ..+.. .+.. + .+.+++.+. +
T Consensus 704 tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 783 (1013)
T PRK06148 704 TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGR 783 (1013)
T ss_pred cCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCC
Confidence 33457888888887643211110 00 011 01111 1121 1 123443332 3
Q ss_pred CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-ccc------CCCCCcCcEEEEcccccccCCC
Q psy12791 143 NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YYQ------KSLPWGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 143 ~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~~------~~~~~~~di~~~S~sK~~~G~~ 211 (393)
++.+|+++......|.+.+ ++++.++|+++ |+++|+||++..+ -.. .......||++ ++|.++ .
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lg--g 858 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIG--N 858 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCCcchhhhhcCCCcceee--eccccc--C
Confidence 5788999988888888886 99999999999 9999999999753 111 11223468875 689995 3
Q ss_pred CceEEEEEecChHHHHHHHHHH-HhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeC
Q psy12791 212 DVVMGATVTNDDSLQARLKFLQ-NSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLH 284 (393)
Q Consensus 212 G~r~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~ 284 (393)
|+.+|.++++ +++.+.+..-. .......++..+..+...++.+.+ ..++..+....+.+.|++ ++.+.
T Consensus 859 G~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~---- 933 (1013)
T PRK06148 859 GHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG---- 933 (1013)
T ss_pred CcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce----
Confidence 5779999997 88877664211 111222467777666666554422 233333334444444432 22222
Q ss_pred CCCCCCcchHHHhhhcCCCcceEEEEEcCC-------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 285 PGLPSHPNHELAKSQWSGTSGMLSFYVNGG-------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
+.+|.|.++.+.+..+ .+....+.+.+...++-+...
T Consensus 934 --------------~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---------------------- 977 (1013)
T PRK06148 934 --------------DVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE---------------------- 977 (1013)
T ss_pred --------------EEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc----------------------
Confidence 2355678888887421 233455665554444333211
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
|.....||+.+.+..++++++.+.++|++.
T Consensus 978 ---g~~~~vlr~~Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 978 ---GPHDNVLKIRPPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred ---CCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 112478999998888888888777777654
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-10 Score=109.41 Aligned_cols=213 Identities=13% Similarity=0.091 Sum_probs=130.1
Q ss_pred CCchHHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHh----------cccCC
Q psy12791 57 NNPTRRNLERCIASLEE-AKHGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQV----------APKIG 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~----------~~~~g 122 (393)
+++...+|.+.|++... .+...+.+||++|. .++.. .....++|+....+|++....+... ....|
T Consensus 137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g 216 (474)
T PLN02482 137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG 216 (474)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence 34555667777777653 34577788899986 44422 2233467888788887743221110 00111
Q ss_pred c------EEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 123 L------EVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 123 ~------~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
. .+..++.+|++.+++.+. ++..+|+++......|.+.| +++|.++|++| |+++|+||++..+-..
T Consensus 217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGfR~g 295 (474)
T PLN02482 217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN-GALLVFDEVMTGFRIA 295 (474)
T ss_pred CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCeecC
Confidence 1 245566678888888775 34778888888888898887 67899999999 9999999998653211
Q ss_pred C-----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-hcCCC--CCHHHHHHHHhccCCHH--HHH
Q psy12791 190 K-----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-SMGVV--PSPFDCWLVTRGLKTLP--CRL 259 (393)
Q Consensus 190 ~-----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~--~~~ 259 (393)
. ......|++ +++|.++ .|+.+|.++++ +++.+.+..... ..+.+ .++..+..+...++.++ ...
T Consensus 296 ~~ga~~~~gv~PDi~--t~gK~lg--gG~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~ 370 (474)
T PLN02482 296 YGGAQEYFGITPDLT--TLGKVIG--GGLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTY 370 (474)
T ss_pred cchHhHHhCCCCCEE--Eecchhh--CCCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHH
Confidence 1 112346775 6789995 45678999887 888887642111 11111 34555554544443332 234
Q ss_pred HHHHHHHHHHHHHHhh
Q psy12791 260 KEHERGSIEVAKFLES 275 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~ 275 (393)
++..+..+.+.+.|++
T Consensus 371 ~~~~~~g~~l~~~L~~ 386 (474)
T PLN02482 371 EYLDKITKKLIQGILE 386 (474)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555543
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-10 Score=108.37 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=163.4
Q ss_pred CCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH-hc------CC-CCeEEEcCCCccchHHHHHHhccc-----
Q psy12791 57 NNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH-LL------SA-GDHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~-~~------~~-gd~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
.++...+|.+.|+++... +...+.+||++|+ .++.. .. .+ ..+|+.-...|++.......+...
T Consensus 97 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~ 176 (460)
T PRK06916 97 ANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQ 176 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccccc
Confidence 456677888889888753 3577778899986 44432 11 13 357888888887743221111100
Q ss_pred -CC---cEEEeeCCC-----------------CHHHHHhhcC---CCCcEEEEec-CCCCcccccC----HHHHHHHHHh
Q psy12791 121 -IG---LEVDFVDLR-----------------KIENLIKYIK---PNTKMVWIEN-PTNPLMTVFD----VKAISAVVKQ 171 (393)
Q Consensus 121 -~g---~~v~~~~~~-----------------d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~~----~~~l~~l~~~ 171 (393)
++ ..+..+|.. +++.+++.+. ++..+|+++. ++...|.+.+ +++|.++|++
T Consensus 177 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~ 256 (460)
T PRK06916 177 VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTK 256 (460)
T ss_pred ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence 00 012222211 2445556553 4678899988 5777787765 8999999999
Q ss_pred CCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHH-------HHhcC
Q psy12791 172 HPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFL-------QNSMG 237 (393)
Q Consensus 172 ~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~~~~ 237 (393)
+ |+++|+||++..+ -.. .......|+++ ++|.++ .| +.+|.++++ +++.+.+... .....
T Consensus 257 ~-g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~--gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~~T 330 (460)
T PRK06916 257 Y-NVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLT--GGYLPIAITVTT-DEIYNAFYGDYEEQKTFFHGHS 330 (460)
T ss_pred c-CCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhh--cCccccceeeec-HHHHHHhhccccccCccccCCC
Confidence 9 9999999998753 111 11223568875 689985 35 468999987 7777765321 01111
Q ss_pred CCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
...++..+..+...++.+.+ ..++..+..+.+.+.|+++.. ++. +.+.++.|.++.+.+..+.
T Consensus 331 ~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~----------v~~vrG~Glm~giel~~~~ 395 (460)
T PRK06916 331 YTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-----LKH----------VGDIRQLGLMVGIELVKNK 395 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCC----------eEEeecCCceeeEEeeccc
Confidence 12366676666665554432 334444455555555554211 111 1123566778888774211
Q ss_pred ----------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 316 ----------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 316 ----------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
.....+...+...++-+.. ..+.+|+.+.+..++++++.+.+
T Consensus 396 ~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----------------------------~g~~l~~~Ppl~it~~~id~~~~ 447 (460)
T PRK06916 396 ETKEPFEWTERVGVQVCKRSRELGMLTRP----------------------------LGNTIVFMPPLASTIDELDEMLR 447 (460)
T ss_pred ccccCCCchhhHHHHHHHHHHHCCeEEEe----------------------------cCCEEEEeCCcccCHHHHHHHHH
Confidence 1123444444333322210 12578888888877777777777
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
+|++.
T Consensus 448 ~l~~~ 452 (460)
T PRK06916 448 ILYKA 452 (460)
T ss_pred HHHHH
Confidence 76544
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-10 Score=106.58 Aligned_cols=282 Identities=14% Similarity=0.073 Sum_probs=155.8
Q ss_pred CCchHHHHHHHHHHHhC---CCcEEEeccHHHHH-HHHHHh--cC------C------CCeEEEcCCCccchHHHHHHhc
Q psy12791 57 NNPTRRNLERCIASLEE---AKHGLCYSSGLGAV-TAVTHL--LS------A------GDHIISGDDVYGGTYRYFAQVA 118 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~---~~~~i~~~~G~~al-~~~~~~--~~------~------gd~vl~~~~~y~~~~~~~~~~~ 118 (393)
..+...++-++|++... .+...+.+||++|+ .++... .. . +.+|+.-..+|++.........
T Consensus 83 ~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~ 162 (431)
T TIGR03251 83 YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLT 162 (431)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhcc
Confidence 34556667777777652 23567789999987 444221 10 1 3678888888877532221111
Q ss_pred ccC----C-cEE---Ee--e-----CC-------------CCHHHHHhhc---CCCCcEEEEecCCCCcccccC----HH
Q psy12791 119 PKI----G-LEV---DF--V-----DL-------------RKIENLIKYI---KPNTKMVWIENPTNPLMTVFD----VK 163 (393)
Q Consensus 119 ~~~----g-~~v---~~--~-----~~-------------~d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~----~~ 163 (393)
... + ... .. . +. .+++++++.+ .+++.+|+++..+...|.+.+ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~ 242 (431)
T TIGR03251 163 NTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242 (431)
T ss_pred CCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHH
Confidence 100 0 000 00 0 10 0233444444 356889999988888898774 99
Q ss_pred HHHHHHHhCCCcEEEEeCccCccccc------CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH-H----
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQ------KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF-L---- 232 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~------~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~-~---- 232 (393)
+|.++|++| |+++|+||++..+-.. .......|+++ ++|.+. + +|++... ++.+.... .
T Consensus 243 ~l~~lc~~~-g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~~-~----~g~~~~~--~i~~~~~~~~~~~~ 312 (431)
T TIGR03251 243 AMRALCDEH-DALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-V----CGIMAGR--RVDEVADNVFAVPS 312 (431)
T ss_pred HHHHHHHHc-CCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccCc-c----ceEEecc--hHHHhhhhcccCcc
Confidence 999999999 9999999999853110 11234578885 678761 1 5666543 32221110 0
Q ss_pred HHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
........++..+..+...++.+.+ ..++..+..+.+.+.|++... .++.+ ..+.++.|.++.+.
T Consensus 313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~---------i~~vrg~G~~~~i~ 379 (431)
T TIGR03251 313 RLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAA----EFPHL---------VSNPRGRGLMCAFD 379 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCccc---------eecccccceeEEEE
Confidence 0111122456666655555544321 223333444444444432100 01100 01124457788888
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+. +.+....+.+.+...++-+... ....+|+++++..++++++.+.++|.+
T Consensus 380 ~~-~~~~~~~~~~~l~~~Gvl~~~~---------------------------g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 380 LP-STADRDEVIRQLYREGVLLLGC---------------------------GERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eC-CHHHHHHHHHHHHhCCeEEecC---------------------------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 84 4555556666665444332110 135799999999999999999888875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=105.20 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=158.1
Q ss_pred CCCchHHHHHHHHHHHhC---CCcEEEeccHHHHH-HHHHHh--c------CC------CCeEEEcCCCccchHHHHHHh
Q psy12791 56 SNNPTRRNLERCIASLEE---AKHGLCYSSGLGAV-TAVTHL--L------SA------GDHIISGDDVYGGTYRYFAQV 117 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~---~~~~i~~~~G~~al-~~~~~~--~------~~------gd~vl~~~~~y~~~~~~~~~~ 117 (393)
+..+...++.++|+++.+ .+...+.+||++|+ .++... . .. ..+|+.-..+|++........
T Consensus 89 ~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~ 168 (443)
T PRK08297 89 VYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSL 168 (443)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhh
Confidence 345666778888888762 23577788899987 444321 1 01 256888888887753222111
Q ss_pred ccc-------CC------cEEEee--CC---C----------CHHHHHhhcC---CCCcEEEEecCCCCcccccC----H
Q psy12791 118 APK-------IG------LEVDFV--DL---R----------KIENLIKYIK---PNTKMVWIENPTNPLMTVFD----V 162 (393)
Q Consensus 118 ~~~-------~g------~~v~~~--~~---~----------d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~ 162 (393)
... .. +....+ +. + +++++++.+. +++.+|+++..+...|.+.+ +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl 248 (443)
T PRK08297 169 TNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFF 248 (443)
T ss_pred cCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHH
Confidence 100 00 000001 10 0 2344445553 46889999888877787764 9
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH-H---
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF-L--- 232 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~-~--- 232 (393)
++|.++|++| |+++|+||++..+ ... .......|+++ ++|.+ ++ +|.+++ .++.+.... .
T Consensus 249 ~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l-~~----~a~l~~--~~i~~~~~~~~~~~ 318 (443)
T PRK08297 249 AAMRELCDEH-DALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKT-QV----CGIMAG--RRVDEVEDNVFAVS 318 (443)
T ss_pred HHHHHHHHHc-CCEEEEechhhccCccchHHHHHhcCCCCCEEE--ecccc-cc----cceecc--hHHHHhhhhhccCc
Confidence 9999999999 9999999999753 111 11233578885 78987 32 344443 333322211 1
Q ss_pred -HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcc
Q psy12791 233 -QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSG 305 (393)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 305 (393)
........++..+..+...++.+. ...++..+..+.+.+.|++ ++.+. .+.++.|.
T Consensus 319 ~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~-----------------~~vrg~G~ 381 (443)
T PRK08297 319 SRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVV-----------------SNVRGRGL 381 (443)
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcc-----------------eeeeccce
Confidence 011122245666666555554332 1234444444444444443 22211 11244578
Q ss_pred eEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 306 MLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
++.+.+. +.+....+.+.+...++-+... ....+|+++++..++++++.+.+
T Consensus 382 ~~~i~~~-~~~~~~~~~~~l~~~Gvl~~~~---------------------------~~~~lr~~P~l~~t~~eid~~l~ 433 (443)
T PRK08297 382 MCAFDLP-TTADRDEVIRRLWEEGVLVLPC---------------------------GERSIRFRPALTVTTEEIDAAID 433 (443)
T ss_pred EEEEEec-CHHHHHHHHHHHHHCCEEEecC---------------------------CCCeEEEECCccCCHHHHHHHHH
Confidence 8899984 5555566666655444332211 13578999999989888888888
Q ss_pred HHHHhh
Q psy12791 386 ALRKAC 391 (393)
Q Consensus 386 al~~~~ 391 (393)
+|.+..
T Consensus 434 ~l~~~l 439 (443)
T PRK08297 434 ALRRAL 439 (443)
T ss_pred HHHHHH
Confidence 887653
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-10 Score=105.14 Aligned_cols=288 Identities=18% Similarity=0.104 Sum_probs=167.5
Q ss_pred CCCchHHHHHHHHHHHhC-C--CcEEEeccHHHHH-HHHHHh----c---CCC-CeEEEcCCCccchHHH----------
Q psy12791 56 SNNPTRRNLERCIASLEE-A--KHGLCYSSGLGAV-TAVTHL----L---SAG-DHIISGDDVYGGTYRY---------- 113 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~-~--~~~i~~~~G~~al-~~~~~~----~---~~g-d~vl~~~~~y~~~~~~---------- 113 (393)
...| ..+|.++|+++.. . +...+..||++|+ .++... . +|. .+++.-...|++....
T Consensus 85 t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~ 163 (449)
T COG0161 85 THEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVAL 163 (449)
T ss_pred CCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhh
Confidence 3456 8899999999987 3 2455567778877 544221 1 233 3477777777653211
Q ss_pred HHHhcccCCcEEEeeCCC-----------C------HHHHHhhcC----CCCcEEEEecCCCC-cccccC----HHHHHH
Q psy12791 114 FAQVAPKIGLEVDFVDLR-----------K------IENLIKYIK----PNTKMVWIENPTNP-LMTVFD----VKAISA 167 (393)
Q Consensus 114 ~~~~~~~~g~~v~~~~~~-----------d------~~~l~~~l~----~~~~~v~l~~p~np-tG~~~~----~~~l~~ 167 (393)
+.......-..+..++.. + .+++++.+. ++..+++++....- .|.++| ++++.+
T Consensus 164 ~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~ 243 (449)
T COG0161 164 RHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVRE 243 (449)
T ss_pred hhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHH
Confidence 101111111112222221 1 345555553 34678888777666 788886 999999
Q ss_pred HHHhCCCcEEEEeCccCcccc------cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-H----Hhc
Q psy12791 168 VVKQHPDILLVLDNTFLTAYY------QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-Q----NSM 236 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~------~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-~----~~~ 236 (393)
+|++| |+++|.||+-..+-- ........|+++ ++|.++ -.-+.+|.++++ +++.+.+..- . ..+
T Consensus 244 iC~ky-~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT-~GY~Pl~a~l~~-~~I~~~~~~~~~~~f~HG~ 318 (449)
T COG0161 244 ICDKY-GILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLT-GGYLPLSAVLTS-DRIYEAFSDGDAGAFMHGH 318 (449)
T ss_pred HHHHc-CcEEEeecceeCCCcCchhhhhhhcCCCCCeee--eccccc-ccchhhHhHhhh-HHHHHHHhcccCCeeccCC
Confidence 99999 999999998876311 112223568886 669885 344567878877 7787777542 1 122
Q ss_pred CCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
.-+..|..++.+++.++-+++ ..++..+....+.+.|++ +|.|. +.++.|-+..++
T Consensus 319 TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vg------------------dVR~~Gli~~iE 380 (449)
T COG0161 319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVG------------------DVRGLGLIGAIE 380 (449)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEE------------------EeeccceEEEEE
Confidence 334568888888877765432 344444445555555553 22332 224556666777
Q ss_pred EcCCHH--------HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 311 VNGGAE--------ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 311 ~~~~~~--------~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
+..+.+ ...++.+.....++-+.+.+..-...+| ++++.++.+++++.
T Consensus 381 lv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PP------------------------liit~~eid~l~~~ 436 (449)
T COG0161 381 LVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPP------------------------LIITREEIDELVDA 436 (449)
T ss_pred EecccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCC------------------------ccCCHHHHHHHHHH
Confidence 643222 2445555554556666555442222333 56666777777777
Q ss_pred HHHHHHHhh
Q psy12791 383 LDQALRKAC 391 (393)
Q Consensus 383 l~~al~~~~ 391 (393)
+.++++...
T Consensus 437 l~~al~~~~ 445 (449)
T COG0161 437 LREALDETL 445 (449)
T ss_pred HHHHHHHHH
Confidence 777777543
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=107.89 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=123.6
Q ss_pred HHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCC----CccchHHHHHHhcccCCcEEEeeCCC---CHHH
Q psy12791 64 LERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDD----VYGGTYRYFAQVAPKIGLEVDFVDLR---KIEN 135 (393)
Q Consensus 64 lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~----~y~~~~~~~~~~~~~~g~~v~~~~~~---d~~~ 135 (393)
+.+.++...+++++.++++.+.++ .++.++.. +.+|+++.- .|+. ....+.+..|++++++... ...+
T Consensus 73 ~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~---~v~d~~~~aG~~l~EvG~tn~t~~~d 148 (395)
T COG1921 73 LAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAF---RVPDIIRLAGAKLVEVGTTNRTHLKD 148 (395)
T ss_pred HHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCC---ChhHHHHHcCCEEEEecccCcCCHHH
Confidence 344444445556788888888887 66666665 545655421 1222 3678889999999998654 6889
Q ss_pred HHhhcCCCCcEEEEecCCCC-cccccCHHHHHHHHHhCCCcEEEEeCccCcccc-----cCCCCCcCcEEEEcccccccC
Q psy12791 136 LIKYIKPNTKMVWIENPTNP-LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVLYSLTKYMNG 209 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~np-tG~~~~~~~l~~l~~~~~~~~livDea~~~~~~-----~~~~~~~~di~~~S~sK~~~G 209 (393)
++.++.+++++++-.+-+|- .=...+.+++.++|+++ ++++++|.+.+..+. +..+..|+|+|++|..|.++|
T Consensus 149 ~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~-~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgG 227 (395)
T COG1921 149 YELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEK-GLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGG 227 (395)
T ss_pred HHHHhccCCeeEEEEeeccccccccccHHHHHHHHHHc-CCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCC
Confidence 99999999887776555543 22344688999999999 999999998865432 122346899999999999976
Q ss_pred CCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 210 HSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
| +.|.++++ ++++++++......+.-.....
T Consensus 228 P---qaGii~Gk-KelI~~lq~~~l~Ralrv~K~t 258 (395)
T COG1921 228 P---QAGIIVGK-KELIEKLQSHPLKRALRVDKET 258 (395)
T ss_pred C---ccceEech-HHHHHHHHhhhhhhhhhcCcHh
Confidence 5 59999998 9999999877665554444433
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-09 Score=102.90 Aligned_cols=290 Identities=15% Similarity=0.104 Sum_probs=160.0
Q ss_pred CCCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHHH--hc-----CCC-CeEEEcCCCccchHHHHHHhcc-----
Q psy12791 56 SNNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVTH--LL-----SAG-DHIISGDDVYGGTYRYFAQVAP----- 119 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~~--~~-----~~g-d~vl~~~~~y~~~~~~~~~~~~----- 119 (393)
+.++...+|.+.|++... .+...+.+||++|+ .++.. .. +++ .+|+.-...|++.......+..
T Consensus 70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~ 149 (443)
T PRK07483 70 FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRR 149 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccc
Confidence 346777889999988764 24577788889886 44421 12 123 4678778778764321111100
Q ss_pred -cCC---cEEEeeCC----CC--------------HHHHHhhcC----CCCcEEEEecCCC-CcccccC----HHHHHHH
Q psy12791 120 -KIG---LEVDFVDL----RK--------------IENLIKYIK----PNTKMVWIENPTN-PLMTVFD----VKAISAV 168 (393)
Q Consensus 120 -~~g---~~v~~~~~----~d--------------~~~l~~~l~----~~~~~v~l~~p~n-ptG~~~~----~~~l~~l 168 (393)
.++ ..+..++. .+ ++++++.+. +++.+|+++..+. ..|.+.+ +++|.++
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l 229 (443)
T PRK07483 150 EPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV 229 (443)
T ss_pred cccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence 011 11222221 11 245555442 4578999988775 3476665 8999999
Q ss_pred HHhCCCcEEEEeCccCccc------ccCCCCCcCcEEEEcccccccCCCCc-eEEEEEecChHHHHHHHHHH----HhcC
Q psy12791 169 VKQHPDILLVLDNTFLTAY------YQKSLPWGVDIVLYSLTKYMNGHSDV-VMGATVTNDDSLQARLKFLQ----NSMG 237 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~------~~~~~~~~~di~~~S~sK~~~G~~G~-r~G~~~~~~~~~~~~~~~~~----~~~~ 237 (393)
|++| |+++|+||++..+- .........|+++ ++|.++ .|+ .+|.++++ +++.+.+.... ....
T Consensus 230 c~~~-gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~--gG~~Pi~av~~~-~~i~~~~~~~~~~~~h~~T 303 (443)
T PRK07483 230 CDRY-GVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLG--AGYQPIGAVLAS-DRIYDAIADGSGFFQHGHT 303 (443)
T ss_pred HHHh-CCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhc--cCccccEEEEEc-HHHHHHHhcCCCccccCCC
Confidence 9999 99999999988531 1112233578875 579995 353 68999987 77777664211 1112
Q ss_pred CCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 238 VVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
...++..+..+.+.++.+++ ..++..+..+.+.+.|++ ++.+. +.++.|.++.+.+
T Consensus 304 ~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~------------------~vRG~Glm~gie~ 365 (443)
T PRK07483 304 YLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVG------------------DIRGRGLFVGVEL 365 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCee------------------eEeecccEEEEEE
Confidence 22456776666665554432 233333334444444432 22222 2255677888877
Q ss_pred cCCH----------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH
Q psy12791 312 NGGA----------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 312 ~~~~----------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~ 381 (393)
..+. +....+.+.+...++-+...+.. . .|..++.|||.+.+.-++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~--~------------------~~~~~~~l~~~PpL~it~~eid 425 (443)
T PRK07483 366 VADRATKAPFDPALKLHARIKREAMARGLMVYPMGGT--I------------------DGVRGDHVLLAPPFIITAAQID 425 (443)
T ss_pred eecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcc--c------------------cCCCCCEEEEECCCCCCHHHHH
Confidence 3211 12344554444333332211000 0 0011367898887777766666
Q ss_pred HHHHHHHH
Q psy12791 382 DLDQALRK 389 (393)
Q Consensus 382 ~l~~al~~ 389 (393)
.+.++|++
T Consensus 426 ~~~~~l~~ 433 (443)
T PRK07483 426 EIVERLGD 433 (443)
T ss_pred HHHHHHHH
Confidence 66665554
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-11 Score=110.17 Aligned_cols=218 Identities=19% Similarity=0.179 Sum_probs=139.9
Q ss_pred CchHHHHHHH----HHHHhCCC---------cEEEeccHHHHH-HHHHHh----c----CCC-----C-eEEEcCCCccc
Q psy12791 58 NPTRRNLERC----IASLEEAK---------HGLCYSSGLGAV-TAVTHL----L----SAG-----D-HIISGDDVYGG 109 (393)
Q Consensus 58 ~~~~~~lr~~----la~~~~~~---------~~i~~~~G~~al-~~~~~~----~----~~g-----d-~vl~~~~~y~~ 109 (393)
.|...+++.. +++++|.+ ..+++++|+.++ .++.+. . ..| + .|++++-+|.+
T Consensus 74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S 153 (373)
T PF00282_consen 74 SPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYS 153 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-TH
T ss_pred ccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccH
Confidence 4666666555 56667766 256777777774 444321 1 112 2 46677767874
Q ss_pred hHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC---C---CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 110 TYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP---N---TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 110 ~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~---~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
+.+++...|+.++.+|.+ |+++|++.+.. + +-+|+.+..+..||.+=|+++|.++|+++ ++|++
T Consensus 154 ----~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~-~~wlH 228 (373)
T PF00282_consen 154 ----IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKY-NIWLH 228 (373)
T ss_dssp ----HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHC-T-EEE
T ss_pred ----HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccc-ceeee
Confidence 788899999999999886 67888877643 2 22566689999999999999999999999 99999
Q ss_pred EeCccCcccccCC----CC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH-HHHHh---------------
Q psy12791 179 LDNTFLTAYYQKS----LP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK-FLQNS--------------- 235 (393)
Q Consensus 179 vDea~~~~~~~~~----~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~-~~~~~--------------- 235 (393)
||.+|+......+ .. ..+|-+..++||++. .|- ..|++..+++....... ....+
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~-~P~-~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~ 306 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLG-VPY-GCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG 306 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS--SS-S-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred ecccccccccccccccccccccccccccccchhhhhc-CCc-cceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence 9999998433211 11 257899999999995 433 48898888765444221 00000
Q ss_pred -cCCCCC----HHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 236 -MGVVPS----PFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 236 -~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
.+...+ .+..|+.++ +.+.+.+++++..+.++++.+.|++.+.++.+
T Consensus 307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~ 360 (373)
T PF00282_consen 307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV 360 (373)
T ss_dssp EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 011111 122333333 44567778888899999999999998886533
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-09 Score=95.29 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=129.5
Q ss_pred eeeCCCCCCCCCccccCCCCchH-------HHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH--hcC-CCCeEEEcCC
Q psy12791 39 FKQNTPGQPPQGFEYSRSNNPTR-------RNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH--LLS-AGDHIISGDD 105 (393)
Q Consensus 39 ~~~~~~~~~~~~~~y~~~~~~~~-------~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~--~~~-~gd~vl~~~~ 105 (393)
+.+.+.+++...-.|+.|..... -+++..++++.|.+ ++-++-.++.+- .++++ .-+ +.++++++..
T Consensus 93 I~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~ 172 (450)
T COG0403 93 ILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKD 172 (450)
T ss_pred HHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCC
Confidence 33344444444445666632221 34566788888877 455554444333 33332 222 3579999999
Q ss_pred CccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc-cccCHHHHHHHHHhCCCcEEEEeC-cc
Q psy12791 106 VYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM-TVFDVKAISAVVKQHPDILLVLDN-TF 183 (393)
Q Consensus 106 ~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG-~~~~~~~l~~l~~~~~~~~livDe-a~ 183 (393)
.|+.+...++..++-.|++++.++.+|+++++++...++..+++.+|+ -.| ...++.+|.+.+|++ ++++++=. .-
T Consensus 173 vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~-~al~~v~aDpl 250 (450)
T COG0403 173 VHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSA-GALVIVAADPL 250 (450)
T ss_pred CCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCC-CCCccchhHHHHHHHHhhc-CCEEEEEechh
Confidence 999988888888899999999999999999999833468999999999 556 666799999999999 87766542 22
Q ss_pred CcccccCCCCCcCcEEEEccccccc--CCCCceEEEEEecChHHHHHH
Q psy12791 184 LTAYYQKSLPWGVDIVLYSLTKYMN--GHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 184 ~~~~~~~~~~~~~di~~~S~sK~~~--G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+......|-.+|+||++++..-.-- |..|--.||+.++ +++..++
T Consensus 251 aL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~-~~~~R~m 297 (450)
T COG0403 251 ALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVK-DEFKRQM 297 (450)
T ss_pred HhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEh-HhHhhcC
Confidence 3344556777899999999877311 2333359999987 6665543
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-10 Score=106.75 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=122.2
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
.....+.++..|+.+|++...+++||++. + .++++++.+||.|+++..+|-+. ....-..|+..+++...
T Consensus 69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi----~~glilaGa~Pvyl~p~~np~ 144 (557)
T COG1982 69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSI----HHGLILAGATPVYLEPSRNPL 144 (557)
T ss_pred CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHH----HHHHHHcCCceEEecCCCCcc
Confidence 45678899999999999999999999886 7 88899999999999999999873 33356678888877542
Q ss_pred -------CHHHHHhhcCC--CC-cEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC------CCCc
Q psy12791 132 -------KIENLIKYIKP--NT-KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS------LPWG 195 (393)
Q Consensus 132 -------d~~~l~~~l~~--~~-~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~------~~~~ 195 (393)
+.+.+.+.+.+ .. |++++++|+ -.|.+++.++|.++++.. ++|+.+|+++.......+ ...+
T Consensus 145 ~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~-~a~v~~deah~~~~~~~~~l~~~~~~~~ 222 (557)
T COG1982 145 YGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHY-GAWVLYDEAHPAHFDFSPMLPESALNGG 222 (557)
T ss_pred ccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhc-CceEEhhhcCcccccccccCcchhhhcC
Confidence 56777776543 35 889999998 459999999999999999 999999999886433222 1247
Q ss_pred CcEEEEcccccccCCCCceEEEEEec
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
.|+++.|.||.++++.- ..++-.+
T Consensus 223 ~~~~tqS~HK~l~alSQ--aS~iHv~ 246 (557)
T COG1982 223 ADFVTQSTHKLLAALSQ--ASMIHVK 246 (557)
T ss_pred ceEEEechhhhhhhhhh--hHHHhhC
Confidence 89999999999854432 4444444
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-09 Score=99.97 Aligned_cols=270 Identities=14% Similarity=0.097 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhCCCc-EEEeccHHHHH--HHHH--Hhc-CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 62 RNLERCIASLEEAKH-GLCYSSGLGAV--TAVT--HLL-SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 62 ~~lr~~la~~~~~~~-~i~~~~G~~al--~~~~--~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
-+++..++++.|.+- +.-+-.|++|. .+++ ... +.+++|+++.-.|+.+.......+...|++++.++.++-..
T Consensus 113 fe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~ 192 (429)
T PF02347_consen 113 FEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGT 192 (429)
T ss_dssp HHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCS
T ss_pred HHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCC
Confidence 567888999999872 22333333332 2222 222 33469999999999876666677888999999998753111
Q ss_pred HHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCc--ccccCCCCCcCcEEEEccccccc-----
Q psy12791 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT--AYYQKSLPWGVDIVLYSLTKYMN----- 208 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~--~~~~~~~~~~~di~~~S~sK~~~----- 208 (393)
.. ++++.+|++++|| -.|.+-++++|.+++|++ |+++++ .+--. .....|-++|+||++++ +|.|+
T Consensus 193 ~d---~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~-gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~ 265 (429)
T PF02347_consen 193 TD---DDDTAAVMVQNPN-TFGVFEDIKEIADIAHAA-GALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGF 265 (429)
T ss_dssp B----STTEEEEEEESS--TTSB--THHHHHHHHHHT-T-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CC
T ss_pred cc---ccCeEEEEeecCC-CCceEeeHHHHHHHHHHc-CCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCC
Confidence 11 5679999999999 559999999999999999 998887 43322 23346667899999887 88664
Q ss_pred CCCCceEEEEEecChHHHHHHHHHH-------------------------H----hcCCCCCHHH-----HHHHHhccCC
Q psy12791 209 GHSDVVMGATVTNDDSLQARLKFLQ-------------------------N----SMGVVPSPFD-----CWLVTRGLKT 254 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~~~~-------------------------~----~~~~~~~~~~-----~~~~~~~~~~ 254 (393)
|-|+ .|++.++ +++...+.... . ...++...+. .++...+-+.
T Consensus 266 GGP~--~G~~a~~-~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~G 342 (429)
T PF02347_consen 266 GGPG--AGFFAVR-EDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEG 342 (429)
T ss_dssp C-S----EEEEE--GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCC--eeeEEEh-hhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHH
Confidence 3444 8999998 66665553110 0 0011111221 2233333345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
+.+.-++...++.++.+.|..... ..+.+ ..+-..+.+.. +. .....++++....++...
T Consensus 343 L~~iA~~~~~~A~yl~~~L~~~~~---~~~~~--------------~~f~e~v~~~~-~~-~~~~~l~~~~~~~gl~~~- 402 (429)
T PF02347_consen 343 LREIAERIHLNAHYLAERLKKIYG---LPFDN--------------PFFFEFVVVFS-KD-KEVEELLKRGIEGGLNLR- 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTB---ECSSS--------------SSBSSEEEEES-S--HHHHHHHHTT----EEEG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---cccCC--------------CCceeeeeecC-Cc-HHHHHHHHHHHhcCCCcc-
Confidence 555666677888888888876421 22221 11112343333 23 455556665544331110
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
. ...+.+-++++..+++++++++.++|
T Consensus 403 ---------~-----------------~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 403 ---------Y-----------------PDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ---------G-----------------G-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ---------c-----------------cCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 0 01457889999999999999998875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=108.41 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh-c--CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 62 RNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL-L--SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 62 ~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~-~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
-+++..++++.|.+ ++-+...++.+. .++++. . +++++|++++-.|+.+...++..++..|++++.++ .++
T Consensus 112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~ 188 (939)
T TIGR00461 112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSD 188 (939)
T ss_pred HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHH
Confidence 45778899999988 334444443333 233332 2 23478999999999887777777789999999985 455
Q ss_pred HHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc-ccCCCCCcCcEEEEccccccc----CC
Q psy12791 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY-YQKSLPWGVDIVLYSLTKYMN----GH 210 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~-~~~~~~~~~di~~~S~sK~~~----G~ 210 (393)
+++.+ ++.++++.+|| -.|.+.|+++|.+++|+. |++++++.-..... ...|-++|+||++++..++.. |-
T Consensus 189 l~~~~--~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~-gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GG 264 (939)
T TIGR00461 189 IKKAV--DVFGCLLQYPA-TDGSILDYKQLIDALHSH-KSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGG 264 (939)
T ss_pred HhhcC--CEEEEEEECCC-CCeEEecHHHHHHHHHHc-CCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCC
Confidence 66555 57788888997 569999999999999999 99999966544432 345667899999887766432 33
Q ss_pred CCceEEEEEecChHHHHHH
Q psy12791 211 SDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 211 ~G~r~G~~~~~~~~~~~~~ 229 (393)
|+ .|++.++ +++...+
T Consensus 265 P~--aG~~a~~-~~l~r~l 280 (939)
T TIGR00461 265 PH--AAFFAVK-DEYNRKM 280 (939)
T ss_pred Cc--eeeeeec-HhhHhhC
Confidence 44 9999997 6666655
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-09 Score=101.62 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=118.8
Q ss_pred HHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-c-----CCCCC--cCc
Q psy12791 133 IENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-Q-----KSLPW--GVD 197 (393)
Q Consensus 133 ~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~-----~~~~~--~~d 197 (393)
++.+++.+. +++.+|+++......|.+.+ +++|.++|+++ |+++|+||++..+-. . ..... ..|
T Consensus 238 l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD 316 (464)
T TIGR00699 238 LEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-NVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD 316 (464)
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence 445566653 35789999999888899887 99999999999 999999999865311 1 11122 277
Q ss_pred EEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES 275 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~ 275 (393)
+++ ++|.++ . .|+++.+ +.+ ..............++..+..+.+.++.+.+ ..++..+....+.+.|++
T Consensus 317 i~t--~gK~lg-~----gG~~~~~-~~~-~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~ 387 (464)
T TIGR00699 317 MVT--FSKKFQ-T----AGYFFHD-PAF-RPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLED 387 (464)
T ss_pred EEE--ehhhhc-c----CCccccc-hhc-cCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 764 689983 2 2344433 221 1100111111223356666555555443321 222332333444444432
Q ss_pred ----CC-CcceEeCCCCCCCcchHHHhhhcC--CCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccccc
Q psy12791 276 ----HP-CVKGVLHPGLPSHPNHELAKSQWS--GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT 348 (393)
Q Consensus 276 ----~~-~~~~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~ 348 (393)
+| .+. +.+ +.|.++.+.++ +...+..+.+.+...++-+..
T Consensus 388 l~~~~~~~i~------------------~vRg~G~Glm~gie~~-~~~~~~~i~~~~~~~Gvl~~~-------------- 434 (464)
T TIGR00699 388 LQKKYPEFIQ------------------NLRGKGRGTFIAWDTP-DEAKRDKLLKKARNNGVNIGG-------------- 434 (464)
T ss_pred HHHhCCCcee------------------eecccCeEEEEEEecC-CHHHHHHHHHHHHHCCcEEec--------------
Confidence 23 121 223 56788888884 555566777666544432211
Q ss_pred CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 349 HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....|||++.+..++++++.+.++|.+.
T Consensus 435 -------------~g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 435 -------------CGVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred -------------CCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 01368999999999999999999888764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=104.88 Aligned_cols=194 Identities=17% Similarity=0.150 Sum_probs=122.8
Q ss_pred CCCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHHH-h------c-CCCCeEEEcCCCccchHHH---------HH
Q psy12791 56 SNNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVTH-L------L-SAGDHIISGDDVYGGTYRY---------FA 115 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~~-~------~-~~gd~vl~~~~~y~~~~~~---------~~ 115 (393)
+..+...+|.+.|.+..+ .+...+.+||++|+ .++.. . . ....+|+....+|++.... +.
T Consensus 56 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~ 135 (339)
T PF00202_consen 56 FTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYR 135 (339)
T ss_dssp SEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHH
T ss_pred eeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccc
Confidence 345677889999999884 34677889999987 55432 2 2 2346788888888763321 11
Q ss_pred HhcccCCcEEEeeCCCCHHH----------HH----hhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEE
Q psy12791 116 QVAPKIGLEVDFVDLRKIEN----------LI----KYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILL 177 (393)
Q Consensus 116 ~~~~~~g~~v~~~~~~d~~~----------l~----~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~l 177 (393)
.........+..+|.+++.. ++ +.-.++..+|+++..+...|...+ +++|.++|+++ |+++
T Consensus 136 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~-gill 214 (339)
T PF00202_consen 136 KGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH-GILL 214 (339)
T ss_dssp TTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT-T-EE
T ss_pred ccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccc-ccce
Confidence 11122223456677766544 22 222345789999988877777664 89999999999 9999
Q ss_pred EEeCccCccc-ccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 178 VLDNTFLTAY-YQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 178 ivDea~~~~~-~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
|+||++..+. .... ....+|+++. +|.++ .|+.+|.++++ +++.+.+............+..+..+.+.
T Consensus 215 I~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~--gG~p~sav~~~-~~i~~~~~~~~~~~T~~g~p~~~aaa~~~ 289 (339)
T PF00202_consen 215 IADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLG--GGLPISAVLGS-EEIMEAFQPGSHGSTFGGNPLSCAAALAT 289 (339)
T ss_dssp EEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGG--TTSSEEEEEEE-HHHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred ecccccccccccCCccceecccccCccccc--ccchh--hhhhccccccc-chhhccccccccccccccchHhhhhhhhH
Confidence 9999999742 1111 2235789875 59996 34789999998 77777553222222223456666666655
Q ss_pred cCCH
Q psy12791 252 LKTL 255 (393)
Q Consensus 252 ~~~~ 255 (393)
++.+
T Consensus 290 l~~~ 293 (339)
T PF00202_consen 290 LEIL 293 (339)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=89.42 Aligned_cols=233 Identities=17% Similarity=0.169 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccHHHHH-HHH--HH---h-cC--CCC--eEEEcCCCccchH-HHH-----HHhcccCC
Q psy12791 60 TRRNLERCIASLEEAKHGLCYSSGLGAV-TAV--TH---L-LS--AGD--HIISGDDVYGGTY-RYF-----AQVAPKIG 122 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~--~~---~-~~--~gd--~vl~~~~~y~~~~-~~~-----~~~~~~~g 122 (393)
...++.+.+.++++.+..+-..+|++|. .++ .. . .+ |.+ +++.....|++.. ... ....+.+|
T Consensus 102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fg 181 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFG 181 (427)
T ss_pred hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccC
Confidence 3456677777788877777788898876 333 11 1 12 322 3444444554310 000 00111222
Q ss_pred ----cEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-----
Q psy12791 123 ----LEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY----- 188 (393)
Q Consensus 123 ----~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~----- 188 (393)
..+..+|.+|.++++.++++ +.++++++..+...|++.| +++..++|.+| ++++|.||+|....-
T Consensus 182 p~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQTGl~RTGk~l 260 (427)
T KOG1402|consen 182 PFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQTGLARTGKLL 260 (427)
T ss_pred CCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhhhcccccCcEE
Confidence 12566777899999999976 4788888999999999998 89999999999 999999999986211
Q ss_pred -cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 189 -QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 189 -~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
........|+++ +.|.++|- =+.+..+.++ ++++-.++.-.....-..+|+.+..+.+.++.+ .-+++.+++.
T Consensus 261 a~d~env~PDivi--lgKalSGG-~~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi--~eekL~era~ 334 (427)
T KOG1402|consen 261 ACDYENVRPDIVI--LGKALSGG-VYPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVI--VEEKLVERAA 334 (427)
T ss_pred EeehhhcCCCeEE--EeccccCC-eeeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 111123468887 55998731 1345556665 677665543333222233566666665555544 2344455555
Q ss_pred HH----HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 268 EV----AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 268 ~l----~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
.+ ...|..++. .+|. ++...+|.|-+..+.+.
T Consensus 335 ~lG~~l~~~L~~l~~----~~p~---------~v~~VRGrGl~~ai~i~ 370 (427)
T KOG1402|consen 335 KLGEILRDQLNKLQK----KFPH---------VVKEVRGRGLLNAIVIN 370 (427)
T ss_pred HHHHHHHHHHHhccc----cccc---------hhheeeccceEEEEEec
Confidence 55 444443322 1122 23344666667777774
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-08 Score=102.35 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=119.3
Q ss_pred CCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCC
Q psy12791 143 NTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 143 ~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~ 211 (393)
+..+|+++.. +.-.|.+++ +++|.++|+++ |+++|.||++..+. . ........||++ ++|.++ .
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~-gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~--~gKgLt--g 658 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSR-KIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC--YAKLLT--G 658 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeecccCCCcccchhhHHhcCCCCCEEe--eccccc--C
Confidence 4678888874 677788876 89999999999 99999999998742 1 112233578886 669995 3
Q ss_pred C-ceEEEEEecChHHHHHHHHH------HHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHH----H----HHHh
Q psy12791 212 D-VVMGATVTNDDSLQARLKFL------QNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEV----A----KFLE 274 (393)
Q Consensus 212 G-~r~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l----~----~~l~ 274 (393)
| +.+|.++++ +++.+.+... .....-...|..++.+.+.++.+++ ..+...++...+ . +.|.
T Consensus 659 G~~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~ 737 (817)
T PLN02974 659 GLVPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAIS 737 (817)
T ss_pred CCCccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 469999997 8888876421 1112223467777777666654432 112222222222 2 2233
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-------HHHHHHHHhcC-ccccccccCCccccccCccc
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-------EETRIFLESLL-IFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~ 346 (393)
.+|.+..+ ++.|.++.+++..+. .....+.+.+. ..++-+. +
T Consensus 738 ~~p~V~~V------------------Rg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r----------~-- 787 (817)
T PLN02974 738 SLPNVERV------------------VSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYAR----------P-- 787 (817)
T ss_pred hCCCeeEE------------------EeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEE----------e--
Confidence 34444333 455778888885321 12233333333 2222111 1
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+.||+...+..++++++.+.+++.+.
T Consensus 788 ----------------~Gnvi~l~pP~~i~~e~l~~~~~~l~~~ 815 (817)
T PLN02974 788 ----------------LGNVVYLMCGPTTSPETCTRLLRKVYRR 815 (817)
T ss_pred ----------------cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0367888888899999999888888753
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-09 Score=96.66 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=131.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-HHHHHHhcC-CCCeEEEcCC----CccchHHHHHHhcccCCcEEEeeC-
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLS-AGDHIISGDD----VYGGTYRYFAQVAPKIGLEVDFVD- 129 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l~~~~~~~~-~gd~vl~~~~----~y~~~~~~~~~~~~~~g~~v~~~~- 129 (393)
.+|...+|++.+++++|.+..+.+.+|..+ ..++..+++ +||++.+..+ .+...+......+...|+.++.++
T Consensus 72 gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~ 151 (467)
T TIGR02617 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYT 151 (467)
T ss_pred cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccc
Confidence 478899999999999999999989899766 466667777 6776664332 111111111233456677766542
Q ss_pred -----------CC---CHHHHHhhcCC----CCcEEEEecCCC-CcccccC---HHHHHHHHHhCCCcEEEEeCccCcc-
Q psy12791 130 -----------LR---KIENLIKYIKP----NTKMVWIENPTN-PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTA- 186 (393)
Q Consensus 130 -----------~~---d~~~l~~~l~~----~~~~v~l~~p~n-ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~- 186 (393)
.+ |++++++.+.+ +...+..+--+| -.|.++| ++++.++|++| |+.+++|.+-..-
T Consensus 152 ~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nN 230 (467)
T TIGR02617 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAEN 230 (467)
T ss_pred hhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHH
Confidence 11 78999999874 222333322223 3577777 67888899999 9999999866431
Q ss_pred c----------ccCCC-------CCcCcEEEEcccccccCCCCceEEEEEecCh---HHHHHHHHHHHh-----cCCCCC
Q psy12791 187 Y----------YQKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDD---SLQARLKFLQNS-----MGVVPS 241 (393)
Q Consensus 187 ~----------~~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 241 (393)
. ...++ ...+|.+..|++|.+ |.|- +|+++++++ ++.++++..... ..+..+
T Consensus 231 A~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKgl-gApv--Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGla 307 (467)
T TIGR02617 231 AYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDA-MVPM--GGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLE 307 (467)
T ss_pred hhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCC-CCcc--cceEEecchhHHHHHHHHHhhcccccCCcCcCchh
Confidence 1 11111 135799999999999 4552 778888877 555555433221 122334
Q ss_pred HHHHHHHHhccCC-H-HHHHHHHHHHHHHHHHHHhh
Q psy12791 242 PFDCWLVTRGLKT-L-PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 242 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~ 275 (393)
.-+...+..+++. . ...........+++.+.|.+
T Consensus 308 grd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~ 343 (467)
T TIGR02617 308 GGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEE 343 (467)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4443333334432 2 22334444556778888865
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=97.63 Aligned_cols=208 Identities=12% Similarity=0.071 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHH-HhcCCCC-eEEEc-CCCccchHHHHHHh-cccCCc------EEEee
Q psy12791 61 RRNLERCIASLEE-AKHGLCYSSGLGAV-TAVT-HLLSAGD-HIISG-DDVYGGTYRYFAQV-APKIGL------EVDFV 128 (393)
Q Consensus 61 ~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~-~~~~~gd-~vl~~-~~~y~~~~~~~~~~-~~~~g~------~v~~~ 128 (393)
..+|.+.|++... .+...+.+||++|+ .++. +..-.|+ +|+.. ...|++....+... ....|. .+..+
T Consensus 90 ~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~ 169 (431)
T PRK06209 90 ELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF 169 (431)
T ss_pred HHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc
Confidence 3467888888764 34577788999987 5443 1111343 44443 23333211111100 001111 13445
Q ss_pred CCCCHHHHHhhcC---CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----CCCCCcCcEEE
Q psy12791 129 DLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-----KSLPWGVDIVL 200 (393)
Q Consensus 129 ~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-----~~~~~~~di~~ 200 (393)
+..|++++++.+. +++.+|+++......+..-.+++|.++|++| |+++|+||++..+... .......|+
T Consensus 170 ~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi-- 246 (431)
T PRK06209 170 RYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHMRGAQKLYGIVPDL-- 246 (431)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCcchhhHHhCCCcce--
Confidence 5668888888774 3466788776553211111289999999999 9999999998653221 011224566
Q ss_pred EcccccccCCCCceEEEEEecChHHHHH--HHHH---HHh-cCC--CCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQAR--LKFL---QNS-MGV--VPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVA 270 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~--~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 270 (393)
.+++|.++ .|+.+|+++++ +++.+. +... ... .+. ..++..+..+.+.++.++ ...++..+..+.+.
T Consensus 247 ~t~gK~lg--gG~p~~av~~~-~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 247 SCFGKALG--NGFAVSALAGK-REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred eeehhhhc--CCcccEEEEEH-HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45789995 35669999987 777765 2110 100 122 234556555555544332 13444445555555
Q ss_pred HHHh
Q psy12791 271 KFLE 274 (393)
Q Consensus 271 ~~l~ 274 (393)
+.|+
T Consensus 324 ~~L~ 327 (431)
T PRK06209 324 AGVN 327 (431)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-07 Score=90.63 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=116.0
Q ss_pred eEEEcCCCccchHHHHHHhcccCCc---EEEeeCCC-----CHHHHHhhcCC----C--CcEEEEecCCCCcccccCHHH
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGL---EVDFVDLR-----KIENLIKYIKP----N--TKMVWIENPTNPLMTVFDVKA 164 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~---~v~~~~~~-----d~~~l~~~l~~----~--~~~v~l~~p~nptG~~~~~~~ 164 (393)
+++++.-.|.+ +.+++...|+ .++.+|.+ |++.|++.+.+ + +-+|+.+..+..+|.+=|+++
T Consensus 224 ~vl~s~~aHyS----~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e 299 (608)
T TIGR03811 224 KWLVPQTKHYS----WLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK 299 (608)
T ss_pred EEEECCCccHH----HHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence 46777766764 7788888898 58888875 78888877742 2 345666888999999999999
Q ss_pred HHHHH---HhCCCc--EEEEeCccCccc---ccC------CC------------------------------CCcCcEEE
Q psy12791 165 ISAVV---KQHPDI--LLVLDNTFLTAY---YQK------SL------------------------------PWGVDIVL 200 (393)
Q Consensus 165 l~~l~---~~~~~~--~livDea~~~~~---~~~------~~------------------------------~~~~di~~ 200 (393)
|.++| +++ |+ +++||.||+.+. +.. |. -..+|-++
T Consensus 300 I~~l~~~~~~~-gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSIt 378 (608)
T TIGR03811 300 IVALRNKLMKE-GIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVT 378 (608)
T ss_pred HHHHHHHHHHc-CCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEE
Confidence 99999 567 76 699999999743 100 00 02578999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHh-----------------cCCCCC--HHHHHHHHhcc----CCHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-----------------MGVVPS--PFDCWLVTRGL----KTLPC 257 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~----~~~~~ 257 (393)
..+||++.-+- -.|.++.+++.+.+.+.....+ .+.-.. ....|+..+.+ +.+..
T Consensus 379 vDpHK~g~~Py--~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~ 456 (608)
T TIGR03811 379 IDPHKMGYIPY--SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGK 456 (608)
T ss_pred eCcccccccCC--CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999984233 4888888877766655321111 111111 23334444443 34666
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q psy12791 258 RLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~ 276 (393)
.+++..+.++++.+.|+..
T Consensus 457 ~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 457 LIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7788888889999999874
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=96.33 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCCc-EEEeccHHHH-H---HHHHHhc-CC----CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 62 RNLERCIASLEEAKH-GLCYSSGLGA-V---TAVTHLL-SA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 62 ~~lr~~la~~~~~~~-~i~~~~G~~a-l---~~~~~~~-~~----gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
.+|++.|.+..|.+. .+-..+|++. . .+|.+.- .. .+.+++|+-.|+. ....+...|.+|+.|+++
T Consensus 112 ~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGT----NPASAam~G~~VV~V~~~ 187 (496)
T COG1003 112 YELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGT----NPASAAMAGFKVVVVKCD 187 (496)
T ss_pred HHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCC----ChhhHhhcCceEEEEecC
Confidence 456777777778775 5667888874 4 4444432 22 3679999999985 455678899999999986
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCccccc-CHHHHHHHHHhCCCcEEEEeCccCcccc--cCCCCCcCcEEEEcc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVF-DVKAISAVVKQHPDILLVLDNTFLTAYY--QKSLPWGVDIVLYSL 203 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~livDea~~~~~~--~~~~~~~~di~~~S~ 203 (393)
|+++|++++.+++.++.+++||.- |..- ++.+|.++.+++ |..|..|.+-.-... ..|-+.|.|++-..+
T Consensus 188 ~~G~VDlddLk~k~~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH~~-Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNL 265 (496)
T COG1003 188 ENGNVDLDDLRAKAEDNLAALMITNPSTL-GVFEEDIREICEIVHEA-GGQVYYDGANLNAIVGLARPGDMGFDVVHLNL 265 (496)
T ss_pred CCCCccHHHHHHHhccceeEEEeccCccc-ccchhhHHHHHHHHHHc-CCEEEecCcchhhhhccccccccccceEEeec
Confidence 899999999999999999999954 4433 599999999999 999999998765322 367778999999999
Q ss_pred ccccc-----CCCCceEEEEEecChHHHHHH
Q psy12791 204 TKYMN-----GHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 204 sK~~~-----G~~G~r~G~~~~~~~~~~~~~ 229 (393)
||.|+ |-|| .|=+..+ .++...+
T Consensus 266 HKTF~iPHGGGGPG--~GPvgVk-~~L~pfL 293 (496)
T COG1003 266 HKTFCIPHGGGGPG--AGPVGVK-AHLAPFL 293 (496)
T ss_pred ccccccCCCCCCCC--CCceehH-hhccccC
Confidence 99986 3445 6666665 5554433
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-07 Score=83.66 Aligned_cols=208 Identities=19% Similarity=0.194 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhC---CCcEEEeccHHHHH-HHHH-Hh--cC---CCC--eEEEcCCCccchHHHHHHhc--ccCCc---
Q psy12791 61 RRNLERCIASLEE---AKHGLCYSSGLGAV-TAVT-HL--LS---AGD--HIISGDDVYGGTYRYFAQVA--PKIGL--- 123 (393)
Q Consensus 61 ~~~lr~~la~~~~---~~~~i~~~~G~~al-~~~~-~~--~~---~gd--~vl~~~~~y~~~~~~~~~~~--~~~g~--- 123 (393)
.-+|.+.|.+..+ .+...+..||++|. .++. +. .. +-+ .++.-..+|++...-.-..+ ..++.
T Consensus 100 av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~ 179 (433)
T KOG1401|consen 100 AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFD 179 (433)
T ss_pred HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCC
Confidence 5567777777773 34577789999996 4442 21 11 112 37777777765321111111 12222
Q ss_pred ----EEEeeCCCCHHHHHhhcCCC---CcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc----
Q psy12791 124 ----EVDFVDLRKIENLIKYIKPN---TKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY---- 188 (393)
Q Consensus 124 ----~v~~~~~~d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~---- 188 (393)
.++..+.+|..++++.++.+ ..+|+++..+...|..+. +..|.++|+++ ++++|.||++..+.-
T Consensus 180 p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g~~ 258 (433)
T KOG1401|consen 180 PIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLGYG 258 (433)
T ss_pred CCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccchH
Confidence 23444455888888888754 589999999988887775 77899999999 999999999986321
Q ss_pred --cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH---hcCCCCCHHHHHHHHhccCCHH--HHHHH
Q psy12791 189 --QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN---SMGVVPSPFDCWLVTRGLKTLP--CRLKE 261 (393)
Q Consensus 189 --~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 261 (393)
+.-+....||. ++.|.++ .|+.+|..+++ +.+.+.+..-.. ...-..+++.+..+...++.+. ...++
T Consensus 259 ~a~e~~~~~PDI~--t~aK~L~--gGlPigA~~v~-~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~ 333 (433)
T KOG1401|consen 259 WAQEYFGVTPDIT--TVAKPLG--GGLPIGATGVR-DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKN 333 (433)
T ss_pred HHHHHhCcCCcce--eehhhcc--CCceeEEEeeh-HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHH
Confidence 11122345766 5779995 45789999998 788887753222 1122235666655555544322 23344
Q ss_pred HHHHHHHHHHHHh
Q psy12791 262 HERGSIEVAKFLE 274 (393)
Q Consensus 262 ~~~~~~~l~~~l~ 274 (393)
..+....+++.|.
T Consensus 334 vs~~~k~L~~~l~ 346 (433)
T KOG1401|consen 334 VSKIGKELRKLLD 346 (433)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=87.17 Aligned_cols=247 Identities=18% Similarity=0.195 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHH-hCCC------cEEE---eccHHHHH---HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEE
Q psy12791 59 PTRRNLERCIASL-EEAK------HGLC---YSSGLGAV---TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEV 125 (393)
Q Consensus 59 ~~~~~lr~~la~~-~~~~------~~i~---~~~G~~al---~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v 125 (393)
.+..++.+.-+++ +|.. ..++ .-||+-++ ..+++..-++..|.+|+|+++. ..+..+..|+.+
T Consensus 95 ~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgN----h~~if~~ag~~~ 170 (427)
T KOG1411|consen 95 TGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGN----HKNIFKDAGLPV 170 (427)
T ss_pred cchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccc----cCccccccCcce
Confidence 3455566666664 4431 2222 24555554 3444545568899999999985 567788889888
Q ss_pred EeeCCC-------CHHHHHhhcCCC--CcEEEE-ecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCCC
Q psy12791 126 DFVDLR-------KIENLIKYIKPN--TKMVWI-ENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKSL 192 (393)
Q Consensus 126 ~~~~~~-------d~~~l~~~l~~~--~~~v~l-~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~~ 192 (393)
..+..- |.+.+.+.+.+. -..|++ ...|||||.-.. +++|.++.++. +.+-+.|.+|..+......
T Consensus 171 ~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG~~d 249 (427)
T KOG1411|consen 171 KFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASGDLD 249 (427)
T ss_pred eeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccCCch
Confidence 666542 555444444332 233444 456999999886 66778888888 8999999999986543221
Q ss_pred C----------Cc-CcEEEEcccccccCCCCceEEEE--EecChHHHHHHH----HHHHhcCCCCCHHHHHHHHhccCCH
Q psy12791 193 P----------WG-VDIVLYSLTKYMNGHSDVVMGAT--VTNDDSLQARLK----FLQNSMGVVPSPFDCWLVTRGLKTL 255 (393)
Q Consensus 193 ~----------~~-~di~~~S~sK~~~G~~G~r~G~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (393)
. .| .-+++.|+.|.+ |+-|-|+|.+ +|.+++...++. .+...+.+++....+.++...+..-
T Consensus 250 ~DA~avR~F~~~g~~~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~ 328 (427)
T KOG1411|consen 250 KDAQAVRLFVEDGHEILLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDP 328 (427)
T ss_pred hhHHHHHHHHHcCCceEeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCCh
Confidence 1 12 238899999999 7999999985 667666665553 3334455555444444554444432
Q ss_pred H----------HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 256 P----------CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 256 ~----------~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
. ...+++...++.+.+.|+. ++.+...+| +. . .-||+.|+-- ++++++.+.++.
T Consensus 329 ~l~~~W~~evk~MadRi~~mR~~L~d~L~~---------~gs~~~W~h-I~----~-QIGMF~fTgl-~peQv~~l~ke~ 392 (427)
T KOG1411|consen 329 DLKNQWLGEVKGMADRIISMRQQLFDALEK---------EGSPGNWSH-IT----K-QIGMFCFTGL-NPEQVDWLTKEY 392 (427)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhHHhhc---------CCCCccHHH-HH----H-hhheeeecCC-CHHHHHHHHhhh
Confidence 2 1122222223333333321 111111111 11 1 1378888752 899999998876
Q ss_pred Cc
Q psy12791 326 LI 327 (393)
Q Consensus 326 ~~ 327 (393)
.+
T Consensus 393 ~i 394 (427)
T KOG1411|consen 393 HI 394 (427)
T ss_pred ee
Confidence 65
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-06 Score=74.16 Aligned_cols=235 Identities=14% Similarity=0.111 Sum_probs=137.3
Q ss_pred HHHhCCC-c----EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchH-HHHHHhcccCCcEEEee---CC--C-----
Q psy12791 69 ASLEEAK-H----GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDFV---DL--R----- 131 (393)
Q Consensus 69 a~~~~~~-~----~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~-~~~~~~~~~~g~~v~~~---~~--~----- 131 (393)
-+.++.+ + .|-.-||+.|. .+..++++|+++|.--+.-.++.. .-|..-.+.-.+.-+++ |. +
T Consensus 96 LeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~ 175 (477)
T KOG2467|consen 96 LEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGY 175 (477)
T ss_pred HHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCc
Confidence 3345654 1 67778999995 777889999999874433222110 00111112222222222 11 1
Q ss_pred -CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc-----ccCCCCCcCcEEEEccc
Q psy12791 132 -KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY-----YQKSLPWGVDIVLYSLT 204 (393)
Q Consensus 132 -d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~-----~~~~~~~~~di~~~S~s 204 (393)
|.+.|++... =++++++.-....+ ..+|..++.++|.+. |+++++|-++..+. ..+|+++ +|||+.+.|
T Consensus 176 IDYD~Le~~A~~frPk~iiaG~SaY~--R~~DYaR~R~Iad~~-gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTH 251 (477)
T KOG2467|consen 176 IDYDKLEKTATLFRPKLIIAGTSAYS--RLIDYARFRKIADKV-GAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTH 251 (477)
T ss_pred eehHHHHHHHHhcCCcEEEeccccch--hhccHHHHHHHHHhc-CceeehhhhhHHHHHhcccCCCcccc-cceeecccc
Confidence 6777776543 36788876443333 567899999999999 99999999998643 2345554 899999999
Q ss_pred ccccCCCCceEEEEEecC--------------hHHHHHHHHHHH--hcCCCCCHHHH--HHHHhcc--CCHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTND--------------DSLQARLKFLQN--SMGVVPSPFDC--WLVTRGL--KTLPCRLKEHER 264 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~ 264 (393)
|.+.|+ |+|.+..+. -++.++|+...- ..|+..+...+ +.+++.. ..+....++..+
T Consensus 252 KsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~ 328 (477)
T KOG2467|consen 252 KSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLK 328 (477)
T ss_pred ccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 998766 677777542 034444442211 11222221111 2223332 235556777789
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
|+..+.+.|.+...- +. .+-. -..++-+.+++ +-..++++++...+
T Consensus 329 Nakala~~l~~~Gy~--lv-tgGT--------------DnHlvLvDLr~~G~dGarvE~vle~~~I 377 (477)
T KOG2467|consen 329 NAKALASALISRGYK--LV-TGGT--------------DNHLVLVDLRPKGVDGARVEKVLELCHI 377 (477)
T ss_pred HHHHHHHHHHHcCce--Ee-cCCc--------------cceEEEEeccccCCchHHHHHHHHHhhh
Confidence 999999988765431 11 1100 02455555542 55788888887765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-06 Score=84.68 Aligned_cols=156 Identities=11% Similarity=0.119 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhCCC--cEEEeccHHHH---HHHHHHhcC-CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHH
Q psy12791 62 RNLERCIASLEEAK--HGLCYSSGLGA---VTAVTHLLS-AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIEN 135 (393)
Q Consensus 62 ~~lr~~la~~~~~~--~~i~~~~G~~a---l~~~~~~~~-~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~ 135 (393)
-+++..++++.|.+ ++-+.-.++.+ +.+.....+ +..++++++-.|+.+....+..++..|++++. ++
T Consensus 127 ~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~ 200 (954)
T PRK12566 127 LNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DA 200 (954)
T ss_pred HHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cc
Confidence 35677889999987 43444333332 222222222 24689999999998777777788889999886 23
Q ss_pred HHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeC-ccCcccccCCCCCcCcEEEEcccc-----cccC
Q psy12791 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLTAYYQKSLPWGVDIVLYSLTK-----YMNG 209 (393)
Q Consensus 136 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDe-a~~~~~~~~~~~~~~di~~~S~sK-----~~~G 209 (393)
+++.+.+++..|++.+|| -.|.+.++++|.+++|+. |+++++-. --+......|-++|+||++++..- .| |
T Consensus 201 ~~~~~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~-gal~~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~-G 277 (954)
T PRK12566 201 VDNLAAHAVFGALLQYPD-THGEIRDLRPLIDQLHGQ-QALACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGY-G 277 (954)
T ss_pred hhhcCCCCEEEEEEECCC-CceEEccHHHHHHHHHHc-CCEEEEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCC-C
Confidence 344556678899999998 569999999999999999 88755322 111233456777899999986543 34 3
Q ss_pred CCCceEEEEEecChHHHHHH
Q psy12791 210 HSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~ 229 (393)
-|+ .||+.++ +++..++
T Consensus 278 GP~--ag~~a~~-~~~~R~~ 294 (954)
T PRK12566 278 GPH--AAYFACR-DDYKRAM 294 (954)
T ss_pred CCC--eeeeeeh-HHHHhhC
Confidence 344 9999998 5665554
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=83.44 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=123.9
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHh-C
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ-H 172 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~-~ 172 (393)
++++...+. .+...++.+++++..+|++ |+..+.+.++++|..++...|+.|+|.+-|+++|.++..+ +
T Consensus 173 iv~~~~v~~----a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w 248 (491)
T KOG1383|consen 173 IVTPQNVHA----AFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIW 248 (491)
T ss_pred ccchHHHHH----HHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHh
Confidence 455544443 5788888999999999886 8999999999999999999999999999999999999999 9
Q ss_pred CCcEEEEeCccCccccc----C--CCCC---cCcEEEEcccccccCCCCceEEEEEecChHHHH-HHHHHHHhc------
Q psy12791 173 PDILLVLDNTFLTAYYQ----K--SLPW---GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA-RLKFLQNSM------ 236 (393)
Q Consensus 173 ~~~~livDea~~~~~~~----~--~~~~---~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~-~~~~~~~~~------ 236 (393)
++++.+|.+-+.|... . ++++ +..-+..+.||+---++| .||++-+++++.. .+.....+.
T Consensus 249 -~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s 325 (491)
T KOG1383|consen 249 -DIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYAS 325 (491)
T ss_pred -CCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccC
Confidence 9999999998876642 1 1222 334566778998556888 8998877654432 221111111
Q ss_pred ----CCCCC--HHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 237 ----GVVPS--PFDCWLV--TRGLKTLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 237 ----~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
++-++ ...+|+. ..+.+.+...+++..++++.+.+.++..+.+.
T Consensus 326 ~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~ 377 (491)
T KOG1383|consen 326 PTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIK 377 (491)
T ss_pred cccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccce
Confidence 11111 1223333 33445677788888999999999998766554
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-06 Score=74.79 Aligned_cols=273 Identities=14% Similarity=0.080 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHhCCCc---EEEeccHHHH-H-HHHHHhcCCCC--eEEEcCCCccchHHHHHHhcccCCcEEEeeC---
Q psy12791 60 TRRNLERCIASLEEAKH---GLCYSSGLGA-V-TAVTHLLSAGD--HIISGDDVYGGTYRYFAQVAPKIGLEVDFVD--- 129 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~---~i~~~~G~~a-l-~~~~~~~~~gd--~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~--- 129 (393)
...+.++.+.++++.|+ .+++..|.++ . .+.+.++..+. .|..-..+-.+ +. -++..+..+....
T Consensus 51 v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a----~~-eA~~~~~~~~~~~~~~ 125 (365)
T COG1932 51 VLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFA----IK-EAKKVGKQPKLIDARI 125 (365)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhH----HH-HHHHhcccccccccce
Confidence 34567778888999983 5566666665 6 55667776543 24443322221 22 2333332111111
Q ss_pred ----CC---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCCC-cCcEEE
Q psy12791 130 ----LR---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLPW-GVDIVL 200 (393)
Q Consensus 130 ----~~---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~~-~~di~~ 200 (393)
.. +++.+. +.++...|.+|+-...+|+-++- .... ++.++|+|.+...+. .+++. ..|++.
T Consensus 126 ~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~------~p~~~~~~~~v~D~SS~ils--r~iDvsk~dviy 195 (365)
T COG1932 126 EEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPE------LPDIGSDGLLVADASSAILS--RPIDVSKYDVIY 195 (365)
T ss_pred eccCccCCCChhhcc--cCCCccEEEEecCCcccceEccC------CCCCCCCceEEEecccHHhc--CCCChhHcceEE
Confidence 11 333332 33334558888777788887761 1122 137899999876443 45553 568999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHH--H-----------HhcCCCCCHHHHHHHHhcc------CCHHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFL--Q-----------NSMGVVPSPFDCWLVTRGL------KTLPCRLKE 261 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 261 (393)
.+..|.+ |+.| ++.++.+ ++++++++.. . ..+.++++.+..++....+ -.++...++
T Consensus 196 agaQKnl-GpaG--ltvvIvr-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~r 271 (365)
T COG1932 196 AGAQKNL-GPAG--LTVVIVR-PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEAR 271 (365)
T ss_pred Eehhhcc-Cccc--eEEEEEc-HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999 7999 8999988 8888877542 1 1123334333333332222 235556666
Q ss_pred HHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccc
Q psy12791 262 HERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLA 341 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~ 341 (393)
-.++++.+.+++...+.......+. .+. .--+.|.+ .+.+....|+..+...+...--|..
T Consensus 272 n~~ka~~LY~~id~s~fy~~~v~~~-------------~RS-~mnV~f~~-~~~~ld~~fv~eae~~gl~~lkGhr---- 332 (365)
T COG1932 272 NQAKAQLLYDWIDKSDFYRNLVAKA-------------NRS-RMNVTFTL-VDAELDKGFVAEAEAAGLIYLKGHR---- 332 (365)
T ss_pred HHHHHHHHHHHHHhCCccccccchh-------------hcc-ceeEEEEc-CcHHHHHHHHHHHHHcCCceecccc----
Confidence 7788889999998765432221111 011 12267777 4677788888887765544333310
Q ss_pred cCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 342 DLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+-+|+|+.---.-+.++.|...++...
T Consensus 333 ---------------------~vgGmRasiynA~~~e~veaL~~fm~~f~ 361 (365)
T COG1932 333 ---------------------SVGGLRASIYNAVPLEDVEALTDFMDWFE 361 (365)
T ss_pred ---------------------CCCceeeeeecCCCHHHHHHHHHHHHHHH
Confidence 13459999987777777888888777554
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.8e-06 Score=71.30 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=143.0
Q ss_pred chHHHHHHHHHHH-hCCC------c---EEEeccHHHHH-HH--HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCc-E
Q psy12791 59 PTRRNLERCIASL-EEAK------H---GLCYSSGLGAV-TA--VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL-E 124 (393)
Q Consensus 59 ~~~~~lr~~la~~-~~~~------~---~i~~~~G~~al-~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-~ 124 (393)
-+...++.+.+++ +|.+ + .+-.-||+-|+ .. +++-.-+...|-+++|++.. ...+++..|. +
T Consensus 74 ~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~n----H~~if~~aGf~t 149 (410)
T KOG1412|consen 74 LGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWEN----HHAIFEKAGFTT 149 (410)
T ss_pred cCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhH----HHHHHHHcCCce
Confidence 3556677777775 4432 2 34445677775 22 22222235579999999985 4455667783 3
Q ss_pred EEee---CCC----CHHHHHhhcCCC--CcEEEEec-CCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC
Q psy12791 125 VDFV---DLR----KIENLIKYIKPN--TKMVWIEN-PTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS 191 (393)
Q Consensus 125 v~~~---~~~----d~~~l~~~l~~~--~~~v~l~~-p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~ 191 (393)
+..+ +.+ |++.+...++.. -.++++.. .+||||.-.. +.+|++..++. +...+.|-+|.++....+
T Consensus 150 v~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAYQGfASGD~ 228 (410)
T KOG1412|consen 150 VATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAYQGFASGDL 228 (410)
T ss_pred eeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhc-CceeeeehhhcccccCCc
Confidence 4333 332 777777776543 23444443 3999999887 55677777777 889999999987654332
Q ss_pred CC----------CcC-cEEEEcccccccCCCCceEEEE--EecChHHHHHHH----HHHHhcCCCCCHHHHHHHHhccCC
Q psy12791 192 LP----------WGV-DIVLYSLTKYMNGHSDVVMGAT--VTNDDSLQARLK----FLQNSMGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 192 ~~----------~~~-di~~~S~sK~~~G~~G~r~G~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
.. .+. .+++.||+|.+ |+-+-|+|-+ +.+++..+..+. .........+....+-++.+.+.+
T Consensus 229 ~~DawAiR~fV~~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~t 307 (410)
T KOG1412|consen 229 DADAWAIRYFVEQGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLST 307 (410)
T ss_pred cccHHHHHHHHhcCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcC
Confidence 11 122 48999999999 7999999974 445565555443 333333344445555556555544
Q ss_pred HHHHHHHH-----------HHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 255 LPCRLKEH-----------ERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 255 ~~~~~~~~-----------~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
-+ ++++. .+.+..|.+.|.. ...|+ ..+| . -..-||++++-- ++.+++.+.+
T Consensus 308 P~-lre~W~~sik~MssRI~~MR~aLrd~L~a------L~TPG---tWDH--I----~~QiGMFSyTGL-tp~qV~~li~ 370 (410)
T KOG1412|consen 308 PE-LREQWIQSIKTMSSRIKKMRTALRDHLVA------LKTPG---TWDH--I----TQQIGMFSYTGL-TPAQVDHLIE 370 (410)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCC---cHHH--H----HhhccceeecCC-CHHHHHHHHH
Confidence 22 22222 2222333333322 12222 1111 1 112478888742 7889998888
Q ss_pred hcCc
Q psy12791 324 SLLI 327 (393)
Q Consensus 324 ~l~~ 327 (393)
.-++
T Consensus 371 ~h~v 374 (410)
T KOG1412|consen 371 NHKV 374 (410)
T ss_pred hceE
Confidence 7665
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-06 Score=75.89 Aligned_cols=246 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred CCchHHHHHHHH----HHHhCCC-----------cEEEeccHHHH-HHHHHHh-------cCCC-----------Ce-EE
Q psy12791 57 NNPTRRNLERCI----ASLEEAK-----------HGLCYSSGLGA-VTAVTHL-------LSAG-----------DH-II 101 (393)
Q Consensus 57 ~~~~~~~lr~~l----a~~~~~~-----------~~i~~~~G~~a-l~~~~~~-------~~~g-----------d~-vl 101 (393)
..|..++|+..+ +++++.| -.++.++.+++ +.++++. ++.+ +- +-
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 568889998654 4444432 36777788777 4333221 2222 22 34
Q ss_pred EcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCC-----CcEEEEecCCCCccc--ccCHHHHHHHH
Q psy12791 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPN-----TKMVWIENPTNPLMT--VFDVKAISAVV 169 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~-----~~~v~l~~p~nptG~--~~~~~~l~~l~ 169 (393)
.++.+|.+ .++.+...|++++.++.+ +.+.|++++.++ +-.+++.+.. .||. .-++.+|..+|
T Consensus 187 ~SDqahss----veka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-TT~~ca~D~l~elg~Vc 261 (511)
T KOG0628|consen 187 CSDQAHSS----VEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-TTSSCAFDELEELGPVC 261 (511)
T ss_pred ecCcccch----HHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-CccccccccHHHhcchh
Confidence 56677774 777888889998888876 567777777643 2233333332 2232 23599999999
Q ss_pred HhCCCcEEEEeCccCccccc----CCCCC---cCcEEEEcccccccCCCCceEEEEEecC-----------hHHHH-HH-
Q psy12791 170 KQHPDILLVLDNTFLTAYYQ----KSLPW---GVDIVLYSLTKYMNGHSDVVMGATVTND-----------DSLQA-RL- 229 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~----~~~~~---~~di~~~S~sK~~~G~~G~r~G~~~~~~-----------~~~~~-~~- 229 (393)
+++ |+||.||.+|++..+. ..+.. .+|-+-...|||+. .-+-...+-.++ +...+ ..
T Consensus 262 ~~~-glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~--vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~ 338 (511)
T KOG0628|consen 262 REE-GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLL--VNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ 338 (511)
T ss_pred hhc-CEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeE--EeeeeecceeecCceeeeeeecChHhhcchhh
Confidence 999 9999999999964321 11111 25677777788763 111111111111 11111 00
Q ss_pred ------HHHHHhcCCCCCHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 230 ------KFLQNSMGVVPSPFDCWLVTRG--LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 230 ------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
+-++...+----.+-.++..+. .+.++..+.++.+.++.+...+.+-+..+-+. .
T Consensus 339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~-----------------~ 401 (511)
T KOG0628|consen 339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVN-----------------K 401 (511)
T ss_pred ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeec-----------------c
Confidence 0001111111112223333332 24455555555555555555444333322111 1
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
..-+++.|+++++.+.++++++++..
T Consensus 402 ~~lgLvcFRlk~~N~~ne~Ll~~in~ 427 (511)
T KOG0628|consen 402 RILGLVCFRLKGDNEINEALLNRLNS 427 (511)
T ss_pred cccceeEEeecCCcHHHHHHHHHHHh
Confidence 12478999998888999999999864
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-05 Score=68.53 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=136.5
Q ss_pred HHHHhCCC---cEEEeccHHHH-HHHHH-Hh--cCC-----C-----CeE-EEcCCCccchHHHHHHhcccCC---cEEE
Q psy12791 68 IASLEEAK---HGLCYSSGLGA-VTAVT-HL--LSA-----G-----DHI-ISGDDVYGGTYRYFAQVAPKIG---LEVD 126 (393)
Q Consensus 68 la~~~~~~---~~i~~~~G~~a-l~~~~-~~--~~~-----g-----d~v-l~~~~~y~~~~~~~~~~~~~~g---~~v~ 126 (393)
+-+..|.+ +.|+.++|+-+ +.++. +- .-| | +-| .+++-+|.+ +.+++..+| -.++
T Consensus 150 m~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYS----i~kaAa~lg~gtd~c~ 225 (510)
T KOG0629|consen 150 MREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYS----IKKAAAFLGLGTDHCI 225 (510)
T ss_pred HHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhh----HHHHHHHhccCCceeE
Confidence 33444543 78999888887 54332 21 111 2 223 455555554 567777777 4677
Q ss_pred eeCCC-----CHHHHHhhcCC---C---CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC---
Q psy12791 127 FVDLR-----KIENLIKYIKP---N---TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL--- 192 (393)
Q Consensus 127 ~~~~~-----d~~~l~~~l~~---~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~--- 192 (393)
.|+.+ ++++|++.+.+ + +-.|-.+......|..-|++.|+++|++| +.|++||.|.+.+..-+..
T Consensus 226 ~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~-~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 226 KVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH-KLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc-CEEEEeecccccccccChhhHh
Confidence 77775 68888887743 2 34455566677888888999999999999 9999999999985542211
Q ss_pred ----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH---------------------hcCCCCCHHHHHH
Q psy12791 193 ----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN---------------------SMGVVPSPFDCWL 247 (393)
Q Consensus 193 ----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 247 (393)
...++-+.-+.||+++ +.+..+.+..+...+.++++.... ..|-....+-.|+
T Consensus 305 kl~Giera~SvtwnpHK~~g--aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWl 382 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMG--APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWL 382 (510)
T ss_pred hccCccccCceeecHHHhhc--CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHH
Confidence 1246789999999994 335677777665556666643321 1233334444444
Q ss_pred HH--hccCCHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 248 VT--RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
.. ++.+.++.++++..+.++++.+.+++.+....+
T Consensus 383 mwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l 419 (510)
T KOG0629|consen 383 MWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEML 419 (510)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceeh
Confidence 44 445678888999999999999999887664433
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-05 Score=67.60 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=115.3
Q ss_pred HHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC---CeEEEcCCCccchHHHHHHhcccCCcEEE----eeCCC--
Q psy12791 64 LERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG---DHIISGDDVYGGTYRYFAQVAPKIGLEVD----FVDLR-- 131 (393)
Q Consensus 64 lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g---d~vl~~~~~y~~~~~~~~~~~~~~g~~v~----~~~~~-- 131 (393)
+-..++...|+. +.|.+.+.-+. + .++..+.+|- -+|+...-.|++-+..+...++..|+.+. .+...
T Consensus 116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG 195 (465)
T KOG3846|consen 116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG 195 (465)
T ss_pred hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc
Confidence 445566666665 57777777777 6 6667777764 46899999999988888899999998753 23222
Q ss_pred ----CHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC---CCcCcEEEE
Q psy12791 132 ----KIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL---PWGVDIVLY 201 (393)
Q Consensus 132 ----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~---~~~~di~~~ 201 (393)
..+++.+.+.. ...+|++...+.-||..+++.+|. .|.+.+|+++=.|-+++.+- .|+ ++|.|+.+.
T Consensus 196 EetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT-~Agq~kgc~VGfDLAHAvgN--VpL~LHdWgVDFACW 272 (465)
T KOG3846|consen 196 EETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAIT-FAGQFKGCLVGFDLAHAVGN--VPLQLHDWGVDFACW 272 (465)
T ss_pred ccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhh-hcccCCCcEechhhhhhhcC--CceEEeecCCceEEE
Confidence 34555555543 367888899999999999999998 45544599999999998542 343 368999999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
...|+++.-+|-.+|..+-. +...+...++
T Consensus 273 CSYKYlnaGaGgIgGlFvHe-kh~~~~~prl 302 (465)
T KOG3846|consen 273 CSYKYLNAGAGGIGGLFVHE-KHTKESLPRL 302 (465)
T ss_pred eeecccccCCCccceeeeeh-hhhcchhhHH
Confidence 99999983344445555532 4343333333
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-05 Score=69.13 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=93.9
Q ss_pred HhCCC---cEEEe--ccHHHHHHHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHH
Q psy12791 71 LEEAK---HGLCY--SSGLGAVTAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIEN 135 (393)
Q Consensus 71 ~~~~~---~~i~~--~~G~~al~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~ 135 (393)
..|.. .++++ .+|++-..++.++ -..++.|+.+...+-+. + .+....|.+++.++.. |.+.
T Consensus 68 ~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc---~-kai~~AGl~~~vV~~~~~~d~l~td~~~ 143 (389)
T PF05889_consen 68 LAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSC---F-KAIERAGLEPVVVENVLEGDELITDLEA 143 (389)
T ss_dssp HTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHH---H-HHHHHTT-EEEEE-EEEETTEEEEHHHH
T ss_pred HcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccch---H-HHHHhcCCeEEEeeccCCCCeeeccHHH
Confidence 45655 34554 3343321333333 24578999998887753 3 3356679998888752 5666
Q ss_pred HHhhcC---CCCcEEEEecCCCCcccccC-HHHHHHHHHhCCCcEEEEeCccCcccc------cCCCCC-cCcEEEEccc
Q psy12791 136 LIKYIK---PNTKMVWIENPTNPLMTVFD-VKAISAVVKQHPDILLVLDNTFLTAYY------QKSLPW-GVDIVLYSLT 204 (393)
Q Consensus 136 l~~~l~---~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~livDea~~~~~~------~~~~~~-~~di~~~S~s 204 (393)
+++.++ ++..+.++++++---+...| +++|.++|+++ |++.++-+||+.=.. +..... -.|+++.|.-
T Consensus 144 ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~-~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~d 222 (389)
T PF05889_consen 144 IEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEY-DIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTD 222 (389)
T ss_dssp HHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHH-T--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHH
T ss_pred HHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHc-CCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecC
Confidence 666554 35678888888877788888 99999999999 999999999985100 011112 2589999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
|.|-=+.| .+.+++.++..+..+..
T Consensus 223 kNF~VPvG--gai~As~~~~~i~~vs~ 247 (389)
T PF05889_consen 223 KNFMVPVG--GAIMASFDPSGILAVSK 247 (389)
T ss_dssp HHHCEESS--HEEEEESSHHHHHHHHH
T ss_pred CCEEecCC--CcEEEecCHHHHHHHHH
Confidence 98853333 55666666777777654
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=69.12 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=116.9
Q ss_pred CcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-----c--cCCCCCcCcEEEEcccccccCCCC
Q psy12791 144 TKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-----Y--QKSLPWGVDIVLYSLTKYMNGHSD 212 (393)
Q Consensus 144 ~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-----~--~~~~~~~~di~~~S~sK~~~G~~G 212 (393)
..+.+-++-++=.|.++| .+++.+..+.+ |.+.|.||++..+- + .....+-.||+ ++.|-++ .|
T Consensus 210 vAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a-GGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIV--tmgKpmG--NG 284 (452)
T KOG1403|consen 210 VAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA-GGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIV--TMGKPMG--NG 284 (452)
T ss_pred HHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC-CCeEEeehhhhcccccchhhhhhhhhccccchh--eecccCC--CC
Confidence 345555777777788887 77888889999 99999999998631 1 11112335777 4779884 45
Q ss_pred ceEEEEEecChHHHHHHHHHH--HhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCC
Q psy12791 213 VVMGATVTNDDSLQARLKFLQ--NSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290 (393)
Q Consensus 213 ~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~ 290 (393)
..++.+++. +++.+.+.... .+..-..+|..++..+.-++.. .-+.+.++++.+-++|..+-.-....++
T Consensus 285 hPVa~Vatt-keIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~--e~E~Lq~ha~~vG~~L~~lL~~~k~kh~----- 356 (452)
T KOG1403|consen 285 HPVAAVATT-KEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVC--EDENLQEHAQQVGEKLEVLLRRLKQKHE----- 356 (452)
T ss_pred CeeeEEecc-HHHHHHhccccceehhccCCCchhHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 569999987 88888776422 1212233566666554443322 1233344444444444321000001111
Q ss_pred cchHHHhhhcCCCcceEEEEEc-------CCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 291 PNHELAKSQWSGTSGMLSFYVN-------GGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
.+-+.+|.|.++-+.+- ++..++..++.+++.. ++..+..|...
T Consensus 357 -----~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~----------------------- 408 (452)
T KOG1403|consen 357 -----CIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHR----------------------- 408 (452)
T ss_pred -----ceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCC-----------------------
Confidence 11233556666666653 2445677777777653 24444433211
Q ss_pred CCCeEE----EEecCCChHHHHHHHHHHHHHh
Q psy12791 363 TDNLVR----LSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 363 ~~~~iR----ls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+. ++|..++.++.+..|.+.|.-+
T Consensus 409 --NilKiKPPmCFneena~e~v~~ld~iLT~m 438 (452)
T KOG1403|consen 409 --NILKIKPPMCFNEENADEFVLGLDEILTVM 438 (452)
T ss_pred --ceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence 1111 6788889999888888887643
|
|
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.8e-05 Score=66.91 Aligned_cols=175 Identities=11% Similarity=0.097 Sum_probs=99.0
Q ss_pred HHHHHhhcC------CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc------c--cCCCCC
Q psy12791 133 IENLIKYIK------PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY------Y--QKSLPW 194 (393)
Q Consensus 133 ~~~l~~~l~------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~------~--~~~~~~ 194 (393)
++++++.+. ..+.+++++..+...|.-.- .+.|.+++++| ++.+|+||++..+- . ...++.
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccCceeeehhcCCCC
Confidence 455555553 13568888888988887663 88999999999 99999999998621 1 123445
Q ss_pred cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHh
Q psy12791 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (393)
..|+| +|||=+. . +||.. +++++-.- ..+.+..+...|.-..++...++.+ ..+.+.++....-.+|.
T Consensus 334 PpD~v--TFSKK~q-~----gGffh--~~~frpn~-pYrifNTWmGdP~k~lll~~vv~~I--~~~~Ll~n~~~vG~~l~ 401 (484)
T KOG1405|consen 334 PPDVV--TFSKKFQ-T----GGFFH--DEEFRPNE-PYRIFNTWMGDPSKNLLLEEVVQEI--KREDLLNNVAHVGKALL 401 (484)
T ss_pred Cccce--ehhhhhh-c----Ccccc--CcccCCCc-hHHHhhhhcCChHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 67888 5778773 3 55544 23433211 1111112222344444443333332 34444555544444332
Q ss_pred h-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccc
Q psy12791 275 S-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCA 331 (393)
Q Consensus 275 ~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (393)
. +..+. -.+|+ .....+|.|.++.+.++ +.+..+.|+..++..++.
T Consensus 402 ~gL~~Lq-~~~p~---------~~~~~RGrGTF~a~d~p-s~~~Rdk~i~~~~~nGv~ 448 (484)
T KOG1405|consen 402 KGLLELQ-AKYPG---------KINNLRGRGTFIAWDCP-SGSIRDKLILIARLNGVN 448 (484)
T ss_pred HHHHHHH-HhCch---------hhhcccccceEEEEeCC-ChHHHHHHHHHHHHcCce
Confidence 1 11110 12232 12233567888999984 778888888888765443
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0013 Score=59.39 Aligned_cols=217 Identities=16% Similarity=0.058 Sum_probs=125.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCcEEEeccHH--HHH-H-HHHH--hcCCCCeEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGL--GAV-T-AVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~--~al-~-~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
..|+ ++..+..|++++-+.+|-...+-+--|- +.| . .+.. -..||.+.++++..|..|.+.. .+..|..
T Consensus 73 EAYa--gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h---~~~ng~~ 147 (471)
T COG3033 73 EAYA--GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH---IQINGAT 147 (471)
T ss_pred hhhc--ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH---HHhcCCc
Confidence 3454 3567788999999999976555555553 333 2 2222 2346766777777777654332 3456766
Q ss_pred EEeeCCC---------------CHHHHHhhcCC----CCcEEEEe-cCCCCcccccC---HHHHHHHHHhCCCcEEEEeC
Q psy12791 125 VDFVDLR---------------KIENLIKYIKP----NTKMVWIE-NPTNPLMTVFD---VKAISAVVKQHPDILLVLDN 181 (393)
Q Consensus 125 v~~~~~~---------------d~~~l~~~l~~----~~~~v~l~-~p~nptG~~~~---~~~l~~l~~~~~~~~livDe 181 (393)
++.++.+ |++.+++.+++ +...|+++ +.|...|...+ ++++.++|++| +++++.|.
T Consensus 148 ~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~ipvv~Da 226 (471)
T COG3033 148 PRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DIPVVMDA 226 (471)
T ss_pred cccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CCcEEeeh
Confidence 6655442 67888887753 35566664 44445555554 78899999999 99999998
Q ss_pred ccCc----ccccCCCC--------------CcCcEEEEcccccccCCCCceEEEEEecChH---HHHHHHHHHH------
Q psy12791 182 TFLT----AYYQKSLP--------------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDS---LQARLKFLQN------ 234 (393)
Q Consensus 182 a~~~----~~~~~~~~--------------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~---~~~~~~~~~~------ 234 (393)
+-.. +.-+.... .-+|-.+-|.-|-. +.. .+|+++.+++. +...++....
T Consensus 227 ~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~--lvn-mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~ 303 (471)
T COG3033 227 ARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDG--LVN-MGGFLCFKDDSFFDVYEECRTLVVVQEGFP 303 (471)
T ss_pred hhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccc--eec-cccEEEecCccHHHHHHHHHhheEeecccc
Confidence 7654 11111100 12566777877753 333 38999998773 5555543321
Q ss_pred hcCCCCCHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHhhC
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLP-CRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+|+........++....+..+ ...+...+..++|.+.|...
T Consensus 304 tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~ 346 (471)
T COG3033 304 TYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA 346 (471)
T ss_pred ccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 2233332222222222222211 23333345567888888754
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=66.46 Aligned_cols=208 Identities=20% Similarity=0.173 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhCCCc-EEEeccHHHH----HHHHHHhc-CCCC----eEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 61 RRNLERCIASLEEAKH-GLCYSSGLGA----VTAVTHLL-SAGD----HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~-~i~~~~G~~a----l~~~~~~~-~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
..+|++.|++..|-+. ++-.+||++. +.+|.+.+ ..|+ ..++|.-.|+. ....+...|.+|+.+.+
T Consensus 584 f~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGT----NPASA~MagmkvvpV~~ 659 (1001)
T KOG2040|consen 584 FTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGT----NPASAAMAGMKVVPVGC 659 (1001)
T ss_pred HHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCC----ChhhHHhcCCEEEEeec
Confidence 4567778888888774 6777888774 25565543 3332 45777778874 45567889999999987
Q ss_pred C-----CHHHHHhhcCC---CCcEEEEecCCCCccccc-CHHHHHHHHHhCCCcEEEEeCccCcc--cccCCCCCcCcEE
Q psy12791 131 R-----KIENLIKYIKP---NTKMVWIENPTNPLMTVF-DVKAISAVVKQHPDILLVLDNTFLTA--YYQKSLPWGVDIV 199 (393)
Q Consensus 131 ~-----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~livDea~~~~--~~~~~~~~~~di~ 199 (393)
+ |..+|.++.++ +-.++.++.|+.- |..- .++++.++.++| |.-+..|.+-..- -...|-++|.|+.
T Consensus 660 ~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHeh-GGQVYlDGANMNAqVGlc~pGd~GaDV~ 737 (1001)
T KOG2040|consen 660 DANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEH-GGQVYLDGANMNAQVGLCRPGDIGADVC 737 (1001)
T ss_pred cCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhc-CCEEEecCCCccceecccCCccccccce
Confidence 6 67777776543 4678888999854 5544 499999999999 9999999876531 1246777899999
Q ss_pred EEccccccc-----CCCCceEEEEEecChHHHHHHHHHHH------------------hcCCCC-CHH-HHHHHHhccCC
Q psy12791 200 LYSLTKYMN-----GHSDVVMGATVTNDDSLQARLKFLQN------------------SMGVVP-SPF-DCWLVTRGLKT 254 (393)
Q Consensus 200 ~~S~sK~~~-----G~~G~r~G~~~~~~~~~~~~~~~~~~------------------~~~~~~-~~~-~~~~~~~~~~~ 254 (393)
--.+||.|+ |-|| +|=+..+ +.+...+..+.. .||+.. -|. .+++...+...
T Consensus 738 HLNLHKTFcIPHGGGGPg--~gPIgVK-~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G 814 (1001)
T KOG2040|consen 738 HLNLHKTFCIPHGGGGPG--MGPIGVK-KHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG 814 (1001)
T ss_pred eecccceeeecCCCCCCC--CCccchh-hhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc
Confidence 999999885 3444 6666665 555544422110 122211 111 22333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
+.+--+...-|+.++...|+++=
T Consensus 815 L~~as~~AiLNaNYMakRLe~hY 837 (1001)
T KOG2040|consen 815 LKDASKIAILNANYMAKRLESHY 837 (1001)
T ss_pred cchhhHHHhhhhHHHHHHHhhcc
Confidence 44333444567778888888653
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.2e-05 Score=73.06 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=106.7
Q ss_pred eeeCCCCCCCCCccccCCCCc-hHHHH------HHHHHHHhCCC--cEEEeccHHHHH--HHHHHhcCCCCeEEEcCCCc
Q psy12791 39 FKQNTPGQPPQGFEYSRSNNP-TRRNL------ERCIASLEEAK--HGLCYSSGLGAV--TAVTHLLSAGDHIISGDDVY 107 (393)
Q Consensus 39 ~~~~~~~~~~~~~~y~~~~~~-~~~~l------r~~la~~~~~~--~~i~~~~G~~al--~~~~~~~~~gd~vl~~~~~y 107 (393)
..+.+.+.+.+.-.|+.|... ..-+| +..++++.|.+ ++-++--|+.|- .++..-..++++.++...+|
T Consensus 136 I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~h 215 (1001)
T KOG2040|consen 136 ILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCH 215 (1001)
T ss_pred HHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCC
Confidence 334444554555566666322 22233 34467777766 567777777664 33333355677899999999
Q ss_pred cchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCc-c
Q psy12791 108 GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT-A 186 (393)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~-~ 186 (393)
+.+....+-.++-+|++++..+ +++.... .++...|++..|... |.+.|..++.+.+++. +.++++----.. -
T Consensus 216 pqtlsV~~TRa~~~~i~v~~~~---~~~~~~s-~~~v~gvlvQYP~t~-G~i~d~~el~~~a~~~-~s~vv~atDLLaLt 289 (1001)
T KOG2040|consen 216 PQTLSVVKTRAKGFGIKVVVSD---IKEADYS-SKDVSGVLVQYPDTE-GSVLDFDELVELAHAN-GSLVVMATDLLALT 289 (1001)
T ss_pred cchhhhhhccccccceeEEecC---HHHhhcc-ccceeEEEEEcCCCC-CcccCHHHHHHHhhcc-CceEEEeehhhHHH
Confidence 9887777766777787766554 3333222 235788888999855 8999999999999998 877665432222 2
Q ss_pred cccCCCCCcCcEEEEccccc
Q psy12791 187 YYQKSLPWGVDIVLYSLTKY 206 (393)
Q Consensus 187 ~~~~~~~~~~di~~~S~sK~ 206 (393)
....|-++|+||.++|...+
T Consensus 290 iLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 290 ILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred ccCChhhcCceeeecccccc
Confidence 33456678999999997664
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00028 Score=57.50 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHh----C--C---CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCcc
Q psy12791 59 PTRRNLERCIASLE----E--A---KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYG 108 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~--~---~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~ 108 (393)
.+..+||+++|+++ | . ++.|++++|+++ + .++..++++||.|+++.|+|+
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 46788999999986 3 2 268999999886 7 777888999999999999996
|
|
| >KOG2790|consensus | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.8 Score=37.31 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhCCCc---EEEe-ccHHHHH-HHHHHhc--CCC---CeEEEcCCCccchHHHHHHhcccCCcE-EEee
Q psy12791 60 TRRNLERCIASLEEAKH---GLCY-SSGLGAV-TAVTHLL--SAG---DHIISGDDVYGGTYRYFAQVAPKIGLE-VDFV 128 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~---~i~~-~~G~~al-~~~~~~~--~~g---d~vl~~~~~y~~~~~~~~~~~~~~g~~-v~~~ 128 (393)
...+.+..+-++++.++ .+++ ++|+... .+.+.++ +.| |.|+.-...-- .+.. ++++|.. .+..
T Consensus 53 ii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~K----A~~E-Akk~~~~~~V~~ 127 (370)
T KOG2790|consen 53 IINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAK----AAEE-AKKYGTPNIVIP 127 (370)
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccCCccceEEeccccHH----HHHH-HHhhCCceEEec
Confidence 34556677788889883 4444 4444445 3333333 444 56676543322 2333 4555543 4443
Q ss_pred CCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEE
Q psy12791 129 DLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIV 199 (393)
Q Consensus 129 ~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~ 199 (393)
+.. |.+.++. +++.+.|+.|.--...|+-++.-- +-.-. +.++|.|-+.- +...|++. ...++
T Consensus 128 ~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETVHGVEf~~~P---~~~~~-~~vlVaDmSSn--flSrpvDvsk~gvi 199 (370)
T KOG2790|consen 128 KLKSYTYGKVPDPSTWEL--NPDASYVYYCANETVHGVEFDFIP---VNDPK-GAVLVADMSSN--FLSRPVDVSKFGVI 199 (370)
T ss_pred cccccccCcCCChhhccc--CCCccEEEEecCceeeceecCCCC---CCCCC-CceEEEecccc--hhcCCccchhcceE
Confidence 332 5555543 456678888765556676664211 11224 88999998654 23356553 35688
Q ss_pred EEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+....|.. |++|+ -.++.+ ++++...
T Consensus 200 ~aGAQKN~-G~aG~--Tvvivr-~dllg~~ 225 (370)
T KOG2790|consen 200 FAGAQKNV-GPAGV--TVVIVR-KDLLGNA 225 (370)
T ss_pred Eecccccc-Ccccc--EEEEEe-hhhhccc
Confidence 89999999 79994 334445 5555543
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.1 Score=39.40 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=82.9
Q ss_pred CcEEEe--ccHHHHHHHHHHh--cCC-CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcC
Q psy12791 75 KHGLCY--SSGLGAVTAVTHL--LSA-GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIK 141 (393)
Q Consensus 75 ~~~i~~--~~G~~al~~~~~~--~~~-gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~ 141 (393)
..++++ .+|++--.++..+ -+| .+.|+.+...--+. ++. .-..|.+.+.+..- |++.+++.+.
T Consensus 76 ~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~---~ks-i~~agfepiiie~i~d~d~l~tdleav~~~ie 151 (432)
T KOG3843|consen 76 ANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSC---FKS-IIHAGFEPIIIENILDGDELITDLEAVEAIIE 151 (432)
T ss_pred hceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHH---HHH-HHhcCCCceeeeccccchHHHHhHHHHHHHHH
Confidence 356665 4555531333332 333 35677666554432 222 23357776665431 6777777765
Q ss_pred CC-Cc--EEEEecC--CCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc------CCCCC-cCcEEEEcccccccC
Q psy12791 142 PN-TK--MVWIENP--TNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ------KSLPW-GVDIVLYSLTKYMNG 209 (393)
Q Consensus 142 ~~-~~--~v~l~~p--~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~------~~~~~-~~di~~~S~sK~~~G 209 (393)
+. .. +.+.+.- -.| -..-.+++|..+|..| +++-+|.++|+.-... ..-.. ..|.++.|+-|.|.
T Consensus 152 e~g~dcilci~sttscfap-r~pd~leaiaaica~~-diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~- 228 (432)
T KOG3843|consen 152 ELGEDCILCIHSTTSCFAP-RSPDNLEAIAAICAAH-DIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFM- 228 (432)
T ss_pred HhCCceEEEEeecccccCC-CCCchHHHHHHHHHcc-CchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcce-
Confidence 43 22 2222111 111 1111399999999999 9999999999852110 11112 25788999999996
Q ss_pred CCCceEEEEEec-ChHHHHHHHHHHHh
Q psy12791 210 HSDVVMGATVTN-DDSLQARLKFLQNS 235 (393)
Q Consensus 210 ~~G~r~G~~~~~-~~~~~~~~~~~~~~ 235 (393)
.|= +|.+++. +..+++.+.+.-+.
T Consensus 229 vpv--ggaiia~fk~n~iq~iak~ypg 253 (432)
T KOG3843|consen 229 VPV--GGAIIAAFKDNFIQEIAKMYPG 253 (432)
T ss_pred eec--chhHhhHhHHHHHHHHHHhCCC
Confidence 442 5555432 34566666554443
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=82.52 E-value=3.7 Score=35.81 Aligned_cols=87 Identities=24% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCCeE-EEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGAVTAVTHLLSAGDHI-ISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~al~~~~~~~~~gd~v-l~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|..+-..+.++++.+-.| ++.++.-. .....++..|++++..+.+|.+.+.+++. +...|++..+.+......-
T Consensus 8 G~~G~~v~~~L~~~~~~V~~l~R~~~~----~~~~~l~~~g~~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~ 82 (233)
T PF05368_consen 8 GNQGRSVVRALLSAGFSVRALVRDPSS----DRAQQLQALGAEVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQ 82 (233)
T ss_dssp SHHHHHHHHHHHHTTGCEEEEESSSHH----HHHHHHHHTTTEEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHH
T ss_pred cHHHHHHHHHHHhCCCCcEEEEeccch----hhhhhhhcccceEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhh
Confidence 433323444444455444 34443311 22333566799999999999999999997 5566666655443222223
Q ss_pred HHHHHHHHHhCCCc
Q psy12791 162 VKAISAVVKQHPDI 175 (393)
Q Consensus 162 ~~~l~~l~~~~~~~ 175 (393)
...+.+.|++. |+
T Consensus 83 ~~~li~Aa~~a-gV 95 (233)
T PF05368_consen 83 QKNLIDAAKAA-GV 95 (233)
T ss_dssp HHHHHHHHHHH-T-
T ss_pred hhhHHHhhhcc-cc
Confidence 56677788877 65
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 393 | ||||
| 3elp_B | 410 | Structure Of Cystationine Gamma Lyase Length = 410 | 1e-127 | ||
| 2nmp_A | 403 | Crystal Structure Of Human Cystathionine Gamma Lyas | 1e-127 | ||
| 1n8p_A | 393 | Crystal Structure Of Cystathionine Gamma-lyase From | 1e-104 | ||
| 3e6g_A | 400 | Crystal Structure Of Xometc, A Cystathionine C-Lyas | 1e-100 | ||
| 1ibj_A | 464 | Crystal Structure Of Cystathionine Beta-Lyase From | 3e-81 | ||
| 3mkj_A | 398 | Methionine Gamma-Lyase From Citrobacter Freundii Wi | 6e-80 | ||
| 3qhx_A | 392 | Crystal Structure Of Cystathionine Gamma-Synthase M | 1e-79 | ||
| 3jwa_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 7e-79 | ||
| 3jw9_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 8e-79 | ||
| 2rfv_A | 398 | High Resolution Structure Of L-Methionine Gamma-Lya | 9e-79 | ||
| 1y4i_A | 398 | Crystal Structure Of Citrobacter Freundii L-Methion | 1e-78 | ||
| 1e5e_A | 404 | Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin | 7e-78 | ||
| 1pff_A | 331 | Crystal Structure Of Homocysteine Alpha-, Gamma-Lya | 5e-73 | ||
| 1cs1_A | 386 | Cystathionine Gamma-Synthase (Cgs) From Escherichia | 2e-72 | ||
| 3aej_A | 389 | Reaction Intermediate Structure Of Entamoeba Histol | 9e-70 | ||
| 3acz_A | 389 | Crystal Structure Of Entamoeba Histolytica Methioni | 5e-69 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 6e-69 | ||
| 3vk2_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 2e-68 | ||
| 1gc0_A | 398 | Crystal Structure Of The Pyridoxal-5'-Phosphate Dep | 3e-68 | ||
| 1qgn_A | 445 | Cystathionine Gamma-Synthase From Nicotiana Tabacum | 2e-57 | ||
| 3ndn_A | 414 | Crystal Structure Of O-Succinylhomoserine Sulfhydry | 1e-52 | ||
| 2ctz_A | 421 | Crystal Structure Of O-Acetyl Homoserine Sulfhydryl | 2e-49 | ||
| 2fq6_A | 415 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 3e-45 | ||
| 1cl2_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 4e-45 | ||
| 1cl1_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 2e-44 | ||
| 2cb1_A | 412 | Crystal Structure Of O-Actetyl Homoserine Sulfhydry | 1e-36 | ||
| 3ri6_A | 430 | A Novel Mechanism Of Sulfur Transfer Catalyzed By O | 7e-36 |
| >pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410 | Back alignment and structure |
|
| >pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403 | Back alignment and structure |
|
| >pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393 | Back alignment and structure |
|
| >pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400 | Back alignment and structure |
|
| >pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464 | Back alignment and structure |
|
| >pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398 | Back alignment and structure |
|
| >pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392 | Back alignment and structure |
|
| >pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398 | Back alignment and structure |
|
| >pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398 | Back alignment and structure |
|
| >pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398 | Back alignment and structure |
|
| >pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404 | Back alignment and structure |
|
| >pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386 | Back alignment and structure |
|
| >pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389 | Back alignment and structure |
|
| >pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398 | Back alignment and structure |
|
| >pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398 | Back alignment and structure |
|
| >pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445 | Back alignment and structure |
|
| >pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414 | Back alignment and structure |
|
| >pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421 | Back alignment and structure |
|
| >pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415 | Back alignment and structure |
|
| >pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395 | Back alignment and structure |
|
| >pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395 | Back alignment and structure |
|
| >pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412 | Back alignment and structure |
|
| >pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 | Back alignment and structure |
|---|
Score = 648 bits (1675), Expect = 0.0
Identities = 222/389 (57%), Positives = 284/389 (73%), Gaps = 1/389 (0%)
Query: 2 SFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTR 61
FLP FAT+A+H+G +P+QW S+ V+PPI LSTTFKQ PGQ GFEYSRS NPTR
Sbjct: 11 GFLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQH-SGFEYSRSGNPTR 69
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+L+ AK+ L ++SGL A +THLL AGD II DDVYGGT RYF QVA +
Sbjct: 70 NCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
GL++ FVD KI+ L I P TK+VWIE PTNP V D++ + +V +H DI+LV+DN
Sbjct: 130 GLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDN 189
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF++ Y+Q+ L G DI +YS TKYMNGHSDVVMG N +SL RL+FLQNS+G VPS
Sbjct: 190 TFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPS 249
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P DC+L RGLKTL R+++H + + VA+FLES+P V+ V++PGLPSHP HEL K Q +
Sbjct: 250 PIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT 309
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
G +GM++FY+ G + IFL++L +F AESLGG ESLA+LPA MTH S+ K RD LG
Sbjct: 310 GCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLG 369
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRKA 390
I+D L+RLSVG+E DL+ DLDQAL+ A
Sbjct: 370 ISDTLIRLSVGLEDEEDLLEDLDQALKAA 398
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 623 bits (1608), Expect = 0.0
Identities = 190/393 (48%), Positives = 259/393 (65%), Gaps = 9/393 (2%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
L + FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R N
Sbjct: 2 LQESDKFATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNREN 59
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LER +A+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+
Sbjct: 60 LERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH---PDILLVLD 180
E F + + +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+D
Sbjct: 120 ETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240
NTFL+ Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +P
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHP-CVKGVLHPGLPSHPNHELAKSQ 299
SPFD WL RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++ Q
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298
Query: 300 WSG--TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE R
Sbjct: 299 HRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAR 358
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+A G+ D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 359 EASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400 | Back alignment and structure |
|---|
Score = 618 bits (1596), Expect = 0.0
Identities = 178/383 (46%), Positives = 253/383 (66%), Gaps = 5/383 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT A+H G PD + V+PPI ++T+ Q++PG+ QGFEYSR++NPTR ERC+A
Sbjct: 20 LATLAIHGGQSPDPS-TGAVMPPIYATSTYAQSSPGEH-QGFEYSRTHNPTRFAYERCVA 77
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK-IGLEVDFV 128
+LE ++SG+ A + V LL AG H+++ DD+YGGT+R F +V + GL+ FV
Sbjct: 78 ALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
DL I+ +TKMVWIE PTNP++ + D+ AI+ + ++H +L V+DNTF +
Sbjct: 138 DLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH-GLLTVVDNTFASPML 196
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATV-TNDDSLQARLKFLQNSMGVVPSPFDCWL 247
Q+ L G D+V++S TKY+NGHSD+V G V ++ L ++ FLQNS+G V PFD +L
Sbjct: 197 QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFL 256
Query: 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
RGLKTLP R++ H ++ +A++LE+HP ++ V++PGL SHP H LAK Q SG G++
Sbjct: 257 ALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIV 316
Query: 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLV 367
S + GG + + F E +F AESLGG+ESL + PA MTH SIP R+ LGI+D LV
Sbjct: 317 SIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALV 376
Query: 368 RLSVGVEGYTDLIADLDQALRKA 390
RLSVG+E DL DL++AL
Sbjct: 377 RLSVGIEDLGDLRGDLERALVNQ 399
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386 | Back alignment and structure |
|---|
Score = 615 bits (1589), Expect = 0.0
Identities = 151/384 (39%), Positives = 221/384 (57%), Gaps = 4/384 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT AV G D+ CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 5 QATIAVRSGLNDDEQ-YGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALA 62
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE + ++G+ A+ VT + L GD +++ D YGG+YR F +A + V FV
Sbjct: 63 ELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
D + L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+
Sbjct: 123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV-GAVSVVDNTFLSPAL 181
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 182 QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL 241
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLS
Sbjct: 242 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS 301
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F ++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R
Sbjct: 302 FELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLR 361
Query: 369 LSVGVEGYTDLIADLDQALRKACK 392
+S G+E DLIADL+ R A K
Sbjct: 362 ISTGIEDGEDLIADLENGFRAANK 385
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 615 bits (1588), Expect = 0.0
Identities = 160/384 (41%), Positives = 221/384 (57%), Gaps = 6/384 (1%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNL 64
+ AT+A+H G PD + V PI S+TF Q+ G G+EY+R+ NPTR L
Sbjct: 13 HRFAGLATRAIHSGYRPDPA-TGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTAL 71
Query: 65 ERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
E +A++E+A G +SSG+ A +L GDH++ DD YGGT+R +V +
Sbjct: 72 EAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
E V L ++ + I+P T+++W+E PTNPL+++ D+ I+ + +++DNTF
Sbjct: 132 EYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS-SAKVLVDNTF 190
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
+ Q+ L G D+VL+S TKY+ GHSDVV GA VTND+ L FLQN G VP PF
Sbjct: 191 ASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPF 250
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
D +L RGLKTL R++ H + VA+FL HP + VL+PGLPSHP H +A Q G
Sbjct: 251 DAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGF 310
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GM+S + G IF AESLG +ESL + P+ MTH S +
Sbjct: 311 GGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQL---EVP 367
Query: 364 DNLVRLSVGVEGYTDLIADLDQAL 387
D+LVRLSVG+E DL+ DL QAL
Sbjct: 368 DDLVRLSVGIEDVADLLDDLKQAL 391
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 611 bits (1579), Expect = 0.0
Identities = 147/386 (38%), Positives = 236/386 (61%), Gaps = 5/386 (1%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRN 63
+ ++ + +T V++ ++ D + + + P+ + TFKQ + + ++Y+RS NPTR
Sbjct: 81 IKEEASVSTLLVNLDNKFDPFDA--MSTPLYQTATFKQPSAIEN-GPYDYTRSGNPTRDA 137
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123
LE +A L++A C++SG+ A++AVTHL+ G+ I++GDDVYGG+ R +QV P+ G+
Sbjct: 138 LESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 197
Query: 124 EVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTF 183
V V+ K++ + I P TK+VW+E+PTNP + D++ IS + L+++DN+
Sbjct: 198 VVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ-GALVLVDNSI 256
Query: 184 LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243
++ + L G DIV++S TK++ GHSDV+ G + L + FLQNS G +PF
Sbjct: 257 MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPF 316
Query: 244 DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303
DCWL RG+KT+ R+++ + + ++A +L SHP VK V + GLP HP H L SQ G
Sbjct: 317 DCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGA 376
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
+ SF G ++ +E+ F A S G ++SL +P M+H SIP E R+A G+T
Sbjct: 377 GSVFSFIT-GSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLT 435
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRK 389
++LVR+S G+E DLI+DLD A +
Sbjct: 436 EDLVRISAGIEDVDDLISDLDIAFKT 461
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 582 bits (1502), Expect = 0.0
Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 12/399 (3%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQ-CVIPPIILSTTFKQNTPGQP-------PQGFE 52
M + + + A+H G + + P++ ++ + N + FE
Sbjct: 48 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFE 107
Query: 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTY 111
Y R NPT LE I++LE A+ L +SG+ A T + L+ AG HI++ D Y T
Sbjct: 108 YGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTR 167
Query: 112 RYFAQVAPKIGLEVDFVDLRKIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVK 170
+ + PK+G+ +D + L + + + + E+PTNP + D++ +S +
Sbjct: 168 IFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH 227
Query: 171 QHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230
+ L+ +D TF T QK+L G D+VL+S TK++ GH+DV+ G ++ L + ++
Sbjct: 228 EK-GALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGC-ISGPLKLVSEIR 285
Query: 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290
L + +G +P +L+ RG+KTL R+++ ++ +A+ LE+HP V+ V +PGL SH
Sbjct: 286 NLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSH 345
Query: 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350
P H +AK Q +G G +SF V+G T F+++L I A S GG ES+ D PA M++
Sbjct: 346 PEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYW 405
Query: 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + R GI DNLVR S GVE + DL AD+ QAL
Sbjct: 406 DLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS 444
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 146/399 (36%), Positives = 227/399 (56%), Gaps = 11/399 (2%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEY 53
M + FAT+A+H G +P ++PP+ + TF T G Y
Sbjct: 1 MHGSNKLPGFATRAIHHGYDPQDH-GGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFY 59
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYR 112
SR +NPT LE +ASLE + GL +SG+GA+T+ LL GD ++ G+ +YG T+
Sbjct: 60 SRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFA 119
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
+ + G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H
Sbjct: 120 FLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH 179
Query: 173 PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKF 231
+V+DNT+ T Y Q+ L G D+V++S TKY++GH D+ G V + + + RL+
Sbjct: 180 -GATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG 238
Query: 232 LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291
L++ G V SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P
Sbjct: 239 LKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFP 298
Query: 292 NHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
+ LA+ Q S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S
Sbjct: 299 QYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSS 358
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
E R GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 359 YTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 578 bits (1493), Expect = 0.0
Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRR 62
AT +H + DQ+ + IPPI ++TF + Q G+ Y+R NPT
Sbjct: 8 PATACIHANPQKDQFGA--AIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVS 65
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
NLE IA LE+ + + SSG+GA+ A V +L AGDH+IS + +YG T+ F K
Sbjct: 66 NLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF 125
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G++VDF++ + K++KPNTK+V+ E P NP + + D++ + +L++ DN
Sbjct: 126 GIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
TF + + +GVD+V++S TKY+NGH+DVV G D L Q R+ +++ G V
Sbjct: 186 TFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI 245
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D WL+TRGL TL R+K +++VA++L+SHP V+ V +PG H H++AK Q
Sbjct: 246 SPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM 305
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
M++F + G E + L++L + A SLGG ESL PA MTH +PKE R+A
Sbjct: 306 RMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAA 365
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GITD ++RLSVG+E +LIAD Q L +
Sbjct: 366 GITDGMIRLSVGIEDADELIADFKQGLDALLR 397
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 143/386 (37%), Positives = 208/386 (53%), Gaps = 13/386 (3%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRR 62
T +H + PI ++TF ++ Q +G YSR NPT
Sbjct: 6 ITTTLLHPKGDHVLH---SHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
E + S+E A + SG+GA+++ L GDH+I+GD +YG T F P+
Sbjct: 63 QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+EVD +D +E + KPNTKMV++E+P NP V D+K I+ V + LV+D
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER-GARLVVDA 181
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241
TF + + K L G DI L+S++KY+NGH DV+ G + A +KF + G + +
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D +L RG+KTLP R++ H ++VAKFLE H + V HPGL S P H++AK Q +
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT 301
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
G F + E + +E L + A SLG +++L + PA MTH ++P+ G
Sbjct: 302 GYGSTFLFEMKSF-EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQG 360
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQAL 387
IT LVR+SVG+E D+IADL QAL
Sbjct: 361 ITPELVRISVGIENVDDIIADLKQAL 386
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 552 bits (1425), Expect = 0.0
Identities = 112/396 (28%), Positives = 196/396 (49%), Gaps = 16/396 (4%)
Query: 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ--------PPQGFEYSRSN 57
D T+ V+ G + V I +++ ++ Y R
Sbjct: 22 ADKKLDTQLVNAGRSKK-YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRG 80
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQ 116
T +L++ + LE + + G AV ++ + GDH++ + Y + + ++
Sbjct: 81 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSK 140
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDI 175
+ K+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+ PD
Sbjct: 141 ILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA 200
Query: 176 LLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
++++DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N +L+
Sbjct: 201 IIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYL 259
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
MG + ++ +RGL+TL RL++H S++VA++L HP V V HP LP HE
Sbjct: 260 MGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEF 319
Query: 296 AKSQWSGTSGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
K ++G+SG+ SF + EE +L++ +F A S GG ESL +I
Sbjct: 320 WKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR 379
Query: 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + + L+RL +G+E DLIADLD +
Sbjct: 380 PQGE--IDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 550 bits (1421), Expect = 0.0
Identities = 157/395 (39%), Positives = 233/395 (58%), Gaps = 11/395 (2%)
Query: 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSN 57
+ F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R
Sbjct: 4 CRTYGFNTQIVHAGQQPDPS-TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLG 62
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQ 116
NPT LE+ +A LE + GL +SG+ A+T + L GDHI+S +YG T+ + +
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSH 122
Query: 117 VAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176
PK G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + Q L
Sbjct: 123 SMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ-GAL 181
Query: 177 LVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNS 235
LV+DNTF++ Y Q+ L G DIV++S+TKY+NGH DV+ G V + + QAR L++
Sbjct: 182 LVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 241
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
G SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL
Sbjct: 242 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 301
Query: 296 AKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355
+ Q S G++SF + GG E R + S+ + A SLG E+L PA MTH + E
Sbjct: 302 GQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPE 361
Query: 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390
R GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 362 ERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 520 bits (1341), Expect = 0.0
Identities = 144/329 (43%), Positives = 202/329 (61%), Gaps = 3/329 (0%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE A+ +SG+GA+ A V L AGDH+IS D +YG T+ F K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDF+D+ N+ K++KPNT++V+ E P NP + V D++ ++ DIL+++DNT
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNT 122
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVPS 241
F + L GVDIV++S TKY+NGH+DVV G + D + + + + +++ G + S
Sbjct: 123 FASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRG TL R+K + +VA+FL H VK V +PGLP HP HE+AK Q
Sbjct: 183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK 242
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F V+G E+ + L++ + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 243 MFGSMIAFDVDGL-EKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRKA 390
+TDNL+RLSVG E D+I DL QAL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQALDLV 330
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 510 bits (1317), Expect = 0.0
Identities = 117/396 (29%), Positives = 205/396 (51%), Gaps = 15/396 (3%)
Query: 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRS 56
LP + AT V G + + L++ + + + YSR
Sbjct: 21 LPDGVSQATVGVRGGMLRSGFEE--TAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRY 78
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFA 115
NPT E + +E A +SG+ AV LL AGD +++ ++G + +
Sbjct: 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS 138
Query: 116 QVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175
++ P+ G++ FVD + + + T+ V+ E P+NP+ ++ D+ A++ +
Sbjct: 139 EILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA-GA 197
Query: 176 LLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
+VLDN F T Q+ P GVD+V+YS TK+++G V+ GA + + + + ++ L
Sbjct: 198 KVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH 257
Query: 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295
G S F+ W++ +GL+TL R++ + +A+FL HP V+ V +P LPSHP ++L
Sbjct: 258 TGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDL 317
Query: 296 AKSQWSGTSGMLSFYVNGGAEETR----IFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
AK Q SG +++F ++ + + L+ + + + +LG +SL PA TH++
Sbjct: 318 AKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRA 377
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
+ E R A+G+ D +VR+SVG+E DLIAD+D+AL
Sbjct: 378 MGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-105
Identities = 122/419 (29%), Positives = 202/419 (48%), Gaps = 39/419 (9%)
Query: 1 MSFLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFK-QNTP------GQPPQGFEY 53
+ F F T+A+H+ + P+ + F+ +N+ G Y
Sbjct: 18 LYFQGHMRGFTTRALHVPKAKRD-VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVY 76
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYR 112
SRS+NPT +LE+ + +L A L SG+ A++ A+ L AGD +++ D ++G T
Sbjct: 77 SRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLS 136
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172
F + P G+EV FVD+ + TK++++E +NP + V D++A+S VV
Sbjct: 137 LFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK 196
Query: 173 PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-------- 224
I LV+D T Y ++ GVDI + S TK+++G V G + D
Sbjct: 197 -GIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLI---DHGLFEWKSL 252
Query: 225 ----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
+AR + QN +G SP + +L + GL+T+ R++ + + E
Sbjct: 253 PSLAPYYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQE 311
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328
+A +L S P VK V HP LP P + +AK Q+ +L+F + E + F+++L +
Sbjct: 312 LAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-EASYRFMDALKLI 370
Query: 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
R A ++ +SL P + + E R L I+ ++RLSVG+E DL D+ QAL
Sbjct: 371 RRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = e-102
Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 49/419 (11%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP------PQGFEYSRSNNPTRRN 63
+ T AV G D + + PI + T + +G+ Y+R +PT +
Sbjct: 3 YTTLAVLAGLPEDPHGAVGL--PIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKA 60
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE + +LE A + +SG A A+ LL GD +++ ++G T F QV +G
Sbjct: 61 LEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMG 120
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+ V +VD + E + + + T+ V++E NP + V D++A++ + ++ + LV+DNT
Sbjct: 121 VTVRYVD-PEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA-GVALVVDNT 178
Query: 183 FL-TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS----------------- 224
F + L WG +V+ SLTK+ +GH V+ GA +
Sbjct: 179 FGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVL---SRETELWRNYPQFLQPDLK 235
Query: 225 --------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270
+ R L G+ SPF+ +L+ +GL+T+ R+ + +A
Sbjct: 236 GQIPWEALRARCFPERVRTLGLSL-CGMALSPFNAYLLFQGLETVALRVARMSETARFLA 294
Query: 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRC 330
+ L+ HP VK + +PGLP P H A+ + +L+ + G E FL ++ + +
Sbjct: 295 ERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLKA 353
Query: 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
A +LG +L P TH + +E R G+T LVR+SVG+E DL+A ++AL
Sbjct: 354 A-NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 6e-98
Identities = 126/421 (29%), Positives = 205/421 (48%), Gaps = 46/421 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFK-QNTP------GQPPQGFEYSRSNNPTRR 62
F T +H G EP+ + PI +T++ ++ G YSR NPT
Sbjct: 3 FETLQLHAGYEPEP-TTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVD 61
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+LE K L +SG A A+T L AGD+I+S ++YGGT+ F ++
Sbjct: 62 VLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL 121
Query: 122 GLEVDFVDLR-KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV F + E + T+ W+E+ NP + + D++A++ ++ + L++D
Sbjct: 122 GIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK-GVALIVD 180
Query: 181 NTFLT-AYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATV----------------TNDD 223
NTF Y + L WG +V +SLTK++ GH V+ GA V
Sbjct: 181 NTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP 240
Query: 224 S----------------LQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267
++AR+ L++ G PF+ W+V G++TL R + H ++
Sbjct: 241 GYHGLRLTEAFGELAFIVKARVDGLRD-QGQALGPFEAWVVLLGMETLSLRAERHVENTL 299
Query: 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS-GTSGMLSFYVNGGAEETRIFLESLL 326
+A +L P V V +PGLP HP+H+ A+ + +L+F + GG E + F+ L
Sbjct: 300 HLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLK 359
Query: 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386
+ ++G +LA PA TH + E + G++ +VRLSVG+E DL A+L +A
Sbjct: 360 LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEA 419
Query: 387 L 387
L
Sbjct: 420 L 420
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 266 bits (682), Expect = 8e-86
Identities = 57/302 (18%), Positives = 104/302 (34%), Gaps = 37/302 (12%)
Query: 38 TFKQNTPGQPP----QGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH 92
+F ++ G+ Y T + + E SG A+ TA+
Sbjct: 43 SFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFG 102
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVA----------PKIGLEVDFVDLRK-----IENLI 137
+L GD ++ + G Y ++ + + + V L + E +
Sbjct: 103 ILRPGDELLY---ITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVA 159
Query: 138 KYIKPNTKMVWIENP----TNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTA-YYQKS 191
I NTKM+ I+ T P T+ +K + A VK+ PD+++ +DN + Q+
Sbjct: 160 AAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP 219
Query: 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251
G D++ SL K G G V + + S G+ +
Sbjct: 220 CHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGASLYSLQE 278
Query: 252 LKTL----PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307
+ P + +G+I A FLE + P + + Q+ M+
Sbjct: 279 MYQGFFLAPHVAGQALKGAIFTAAFLEK---LGMNTSPAWNAPRTDLIQSVQFDDKDRMI 335
Query: 308 SF 309
+F
Sbjct: 336 AF 337
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 8e-75
Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 52/319 (16%)
Query: 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGA 86
Q + ++ + Y+ + + I + E A + +G A
Sbjct: 46 QLKVLKAFQEERISESHFTNSSG-YGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHA 104
Query: 87 V-TAVTHLLSAGDHIIS--------GDDVYGGTYRYFAQVAPKIGLEVDFVDLRK----I 133
+ A+ L D ++S D+ G + G++ VDL+ I
Sbjct: 105 IGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDI 164
Query: 134 ENLIKYIKPN--TKMVWIENPTN----PLMTVFDVKAISAVVKQH-PDILLVLDNTFLTA 186
+ + +K + K++ I+ T + + ++ I +++ ++++ +DN +
Sbjct: 165 NTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF 224
Query: 187 YYQKS-LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVVPSPF 243
+K G DI+ SL K + G G ++ + + G S F
Sbjct: 225 VEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTF 284
Query: 244 DCW-------LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELA 296
+ + + +E+A G P +
Sbjct: 285 GVMRSLYEGLFMAPHVTIEAVKGAVFCARIMELA---------------GFDVLPKYNDK 329
Query: 297 KSQ------WSGTSGMLSF 309
++ ++ ++ F
Sbjct: 330 RTDIIQAIKFNDEKKLIDF 348
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 1e-65
Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 36/277 (12%)
Query: 48 PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISG--- 103
G+ Y + + + + E A + +G A+ A+ L G+ ++S
Sbjct: 65 SSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGE 124
Query: 104 -----DDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPT 153
DV G T + G+ VDL++ +E + K +K + + +
Sbjct: 125 PYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184
Query: 154 N------PLMTVFDVKAISAVVK-QHPDILLVLDNTFLTAYY-QKSLPWGVDIVLYSLTK 205
+ + + D+K+I VK DI+ +DN + ++ G D++ SL K
Sbjct: 185 STGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIK 244
Query: 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR----GLKTLPCRLKE 261
+ G G D + + G+ + V R GL P E
Sbjct: 245 NIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISME 303
Query: 262 HERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298
+G+I ++ +E G P ++ +S
Sbjct: 304 ALKGAILCSRIMELA---------GFEVMPKYDEKRS 331
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 2e-63
Identities = 40/338 (11%), Positives = 98/338 (28%), Gaps = 35/338 (10%)
Query: 53 YSRSNNPTR-----RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY 107
+ + +E + ++ A+ A L I ++
Sbjct: 50 LNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELP 109
Query: 108 GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTN-PLMTVFDVKAIS 166
G + + + + K+ ++ I +T ++ + + ++ + + K +
Sbjct: 110 GHPSIERS----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVI 165
Query: 167 AVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN 221
K + ++ +D+ +L G D+V+ S K M G G +
Sbjct: 166 NTAKNK-EAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP----RGGLLAG 220
Query: 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEVA----KFLESH 276
L ++ G+ P + R LK R+++ + + L
Sbjct: 221 KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKE 280
Query: 277 P-CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAES-- 333
+ ++ P + K + + E L++ I +
Sbjct: 281 LKAIDDNINIVYERTPTGFVIKRV----YKDDTINIKKLIEIGFNLLKNYGIITITVAGM 336
Query: 334 LGGIESLADLPAEMTHKSI-PKETRDALGITDNLVRLS 370
G +SL + I A I +++
Sbjct: 337 PGASKSLRIDLTSRDAERIDDNYIIKA--IVESIKMAF 372
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 3e-63
Identities = 48/271 (17%), Positives = 89/271 (32%), Gaps = 33/271 (12%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIIS--- 102
P G+ Y T + + E A SG A+ T + +L D ++
Sbjct: 50 PSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITG 109
Query: 103 -----GDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENP 152
+++ G + + V L + + K + P TKM+ I+
Sbjct: 110 QPYDTLEEIVGIRKQGQ-GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRS 168
Query: 153 ----TNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLT-AYYQKSLPWGVDIVLYSLTKY 206
P T+ +K + VK P++++ +DN + YQ+ G DI+ SL K
Sbjct: 169 RGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKN 228
Query: 207 MNGHSDVVMGATVTNDD-SLQARLKFLQNSMGVV--PSPFDCWLVTRGLKTLPCRLKEHE 263
G G + + +G S + + +G P +
Sbjct: 229 PGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAI 288
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHE 294
+G+ A L G+ + P +
Sbjct: 289 KGARFTAAMLAEF---------GVEADPVWD 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 3e-12
Identities = 61/412 (14%), Positives = 126/412 (30%), Gaps = 108/412 (26%)
Query: 22 DQWRSQCVIPPIILSTTFKQNTPGQ-PPQGF-EYSRSNNPTRRNLERCIASLEEAK---- 75
+++ P ++ +Q Q F +Y+ S L + + L AK
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 76 HGLCYSSGLG-AVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134
G+ G G A+ LS ++ + L ++
Sbjct: 156 DGV---LGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNC------NSPETVLEMLQ 203
Query: 135 NLIKYIKPNTKMVWIENPTNPLMTVFDVK-AISAVV--KQHPDILLVLDN---------- 181
L+ I PN ++ +N + + ++ + ++ K + + LLVL N
Sbjct: 204 KLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 182 -----TFLTAYYQKSLPWGVDIVLYSLTKY--MNGHSDVVMGATVTNDDSLQARLKFLQN 234
LT + K + D + + T + ++ HS T+T D+ LK+L
Sbjct: 263 NLSCKILLTTRF-KQV---TDFLSAATTTHISLDHHSM-----TLTPDEVKSLLLKYLDC 313
Query: 235 SMGVVP------SPFDCWLVTRGLKTLPCRLKEHERGSIE-VAKFLESHPCVKGVLHPGL 287
+P +P ++ ++ + + + + +ES + VL P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLN-VLEP-- 368
Query: 288 PSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347
E R + L +F S A +P +
Sbjct: 369 ----------------------------AEYRKMFDRLSVFP--PS-------AHIPTIL 391
Query: 348 T----HKSIPKETRDALGITDNLVRLSV---GVEGYTDLIADLDQALRKACK 392
I + + + L + S+ + T I + L+ +
Sbjct: 392 LSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 67/351 (19%), Positives = 111/351 (31%), Gaps = 85/351 (24%)
Query: 98 DHIISGDDVYGGTYRYFAQVAPKIGLEV--DFVD--LRK----IENLIK--YIKPNTKMV 147
DHII D GT R F + K E+ FV+ LR + + IK +P+
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 148 WIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIVLYSLTKY 206
+ L V A V + P L L A + + +++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLRQ----ALLELRPAKN---VLIDG---- 157
Query: 207 MNGHSDVVMGATVTNDDSLQARLKF----LQNSMGVVPSP-------------FDCWLVT 249
+ G + V +Q ++ F L ++ SP D +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVL------HPGLPSHPNHE---LAKSQW 300
R + +L+ H E+ + L+S P +L + + N L +++
Sbjct: 216 RSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 301 SGTSGMLSFYVNGGAEETRIFL----------ESLLIFRCAESLGGIESLADLPAEMTHK 350
+ LS A T I L E + + L DLP E+
Sbjct: 275 KQVTDFLS-----AATTTHISLDHHSMTLTPDEVKSLL--LKYLD--CRPQDLPREVLTT 325
Query: 351 S------IPKETRDALGITDNLVRLSVGVEGYTDLI----ADLDQALRKAC 391
+ I + RD L DN V + T +I L+ A +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKM 374
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
++ + EV F E++ + N W+ NP NP + I ++
Sbjct: 98 SFAEYEDACRMYEHEVCFYPSN--EDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLL 155
Query: 170 KQHPDILLVLDNTFL--TAYYQKSLPWGVD----IVLYSLTK 205
HPD VLD +++ T +++YS +
Sbjct: 156 NDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH 197
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 111 YRYFAQVAPKIGLEVDFVDLRKIEN------LIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
Y + G E+ LR+ + +++ + P+ +++ P NP + +
Sbjct: 111 YGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPL 167
Query: 165 ISAVVKQHP--DILLVLDNTFL--TAYYQKSLPWGVD----IVLYSLTK 205
+ A+ + +I L+LD F+ + +P D VL SLTK
Sbjct: 168 LQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTK 216
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 93 LLSAGDHIISGDDVYG-GTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
LL + + YR A + G EV + L + +E ++ I T +
Sbjct: 104 LLDTTTNTVMAT--PTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTI 158
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
VWI NP NP ++ I A + + P D+L+VLD AY
Sbjct: 159 VWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLD----EAYI 197
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 93 LLSAGDHIISGDDVYG-GTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKM 146
L++ + + Y +A+ G + + L + K K+
Sbjct: 102 KLNSKNAFLQAG--VTFAMYEIYAKQC---GAKCYKTQSITHNLDEFKKLYETHKDEIKL 156
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
+++ P NPL D + +K D L+V+D AY
Sbjct: 157 IFLCLPNNPLGECLDASEATEFIKGVNEDCLVVID----AAYN 195
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-08
Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 35/212 (16%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRY 113
LER + L KH + G GA ++ L ++G+ + G +
Sbjct: 80 LERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVD 139
Query: 114 -FAQVAPKIGLEVDF---VDLRKIENLIK-YIKPNTKMVWIENPTNPL----MTVFDVKA 164
A GL + F +DL+K++ LI N + + N +++ +++A
Sbjct: 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRA 199
Query: 165 ISAVVKQHPDILLVLDNT--FLTAYYQKSLPWGV-DIVLYSLTKYMNGHSDVVM------ 215
+ + + H I + D T AY+ K G + + + M ++D
Sbjct: 200 VRELTEAH-GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 216 ------GATVTNDDSLQARLKFLQNSMGVVPS 241
G NDD + + K L +PS
Sbjct: 259 CLVNIGGFLCMNDDEMFSSAKELVVVYEGMPS 290
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-------IENLIKYIKPNTK 145
L+ GDH+I TY+ + +G EVD + + +E L + I+P TK
Sbjct: 101 LIEPGDHVI----SLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTK 156
Query: 146 MVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
M+ I N NP +M ++ + + + ++ D
Sbjct: 157 MICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSD 193
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL 123
+ Y A HLL GD I + ++ +V
Sbjct: 173 GTAAIVY---AFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYE---LVEVDLHSYE 226
Query: 124 EVDFVDLRKI--ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLV 178
+ D+ +I + K P+ K + + NPTNP + AI V+++P ++++
Sbjct: 227 KNDW----EIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMII 282
Query: 179 LD 180
D
Sbjct: 283 SD 284
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 6e-07
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKA 164
+Y + A K G+ V F L + E++I I + V I NP NP + + +
Sbjct: 107 SYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-DVDSVIIGNPNNPNGGLINKEK 165
Query: 165 ISAVVKQ--HPDILLVLDNT---FLTAYYQKSLPWGVD----IVLYSLTK 205
V+K +++D F + + ++ ++TK
Sbjct: 166 FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTK 215
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNT--K 145
S ++ + YG +FA++A G++V V + IE L + +
Sbjct: 88 YASLEAQLVIPELTYG-DGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPS 143
Query: 146 MVWIENPTNPLMTVFDVKAISAVVKQHP-DILLVLDNTFLTAYY 188
+V++ NP NP T+ I + P + + ++D AY
Sbjct: 144 IVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD----EAYA 183
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 26/123 (21%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVY----------GGTYRYFAQVAPKIGL 123
+ Y + + LL AGD + G V+ VA
Sbjct: 174 GTAAMAY---IFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEE---VAINADP 227
Query: 124 EVDFVDLRKI--ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQH-PDILL 177
+++ + L K P K+ + NP+NP M ++ + +V +H PD+++
Sbjct: 228 SLNW----QYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMI 283
Query: 178 VLD 180
+ D
Sbjct: 284 LTD 286
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 81 SSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF--------VDLRK 132
G A+ +VT LL D I+ + G + Q+ + + V V +
Sbjct: 61 GGGTSAMESVTSLLKPNDKILVVSNGVFGDR--WEQIFKRYPVNVKVLRPSPGDYVKPGE 118
Query: 133 IENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLTAY 187
+E ++ K K+V + E T V VK + ++++ L+V+D + + A
Sbjct: 119 VEEEVR--KSEYKLVALTHVETST----GVREPVKDVINKIRKY-VELIVVDGVSSVGAE 171
Query: 188 YQKSLPWGVDIVL 200
K+ W VD+ L
Sbjct: 172 EVKAEEWNVDVYL 184
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+ + + ++ D ++ G + ++A + G V D
Sbjct: 69 GTSRAGIEAVLASVIEPEDDVLIPI---YGRFGYLLTEIAERYGANVHMLECEWGTVFDP 125
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
I IK K K+V + E T +KAI + D L ++D +
Sbjct: 126 EDIIREIK--KVKPKIVAMVHGETST----GRIHPLKAIGEACRTE-DALFIVDAVATIG 178
Query: 186 AYYQKSLPWGVDIVL 200
K W +D +
Sbjct: 179 GCEVKVDEWKIDAAI 193
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
AV L+ G ++ + D Y G V G +D LR+
Sbjct: 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRR----- 155
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ P T+ + I +P NP V ++ AI+ + +++++ D
Sbjct: 156 -AVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITD 199
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 20/132 (15%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY--RYFAQVAPKIGLEVDFVDLR-----K 132
S G++ V + + D ++ D GG++ R F Q+ + + L
Sbjct: 78 CSSTGSMEAVVMNCFTKKDKVLVID---GGSFGHR-FVQLCEIHEIPYVALKLEHGKKLT 133
Query: 133 IENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLTAYY 188
E L +Y N + + E T ++D I K++ ++ V D + A
Sbjct: 134 KEKLYEYDNQNFTGLLVNVDETSTA---VLYDTMMIGEFCKKN-NMFFVCDCVSAFLADP 189
Query: 189 QKSLPWGVDIVL 200
G D+++
Sbjct: 190 FNMNECGADVMI 201
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
+ + A L+S D +++ VYG F A + + +D
Sbjct: 66 GEPVLGLEAAAASLISPDDVVLNLASGVYGK---GFGYWAKRYSPHLLEIEVPYNEAIDP 122
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQHPDILLVLDN-TFLTA 186
+ + +++K P +V + + P+ T+ + AI A+V H L++D +
Sbjct: 123 QAVADMLKA-HPEITVVSVCHHDTPSG---TINPIDAIGALVSAH-GAYLIVDAVSSFGG 177
Query: 187 YYQKSLPWGVDIVL 200
DI +
Sbjct: 178 MKTHPEDCKADIYV 191
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+ + + + GD ++ G + ++A + EV
Sbjct: 71 GTSRAGIEAILVSAIRPGDKVLVPV---FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTP 127
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
++E+ +K I+P +++ + T T+ + + + +++ D L D L
Sbjct: 128 DQVEDAVKRIRP--RLLLTVQGDTST----TMLQPLAELGEICRRY-DALFYTDATASLG 180
Query: 186 AYYQKSLPWGVDIVL 200
++ WG+D V
Sbjct: 181 GNPLETDVWGLDAVS 195
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SG A+ TA+ +LL GD ++G + ++G A++A +IG V L
Sbjct: 81 GSGHCAMETALFNLLEPGDSFLTGTNGIWGM---RAAEIADRIGARVHQMIKKPGEHYTL 137
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+++E + KP ++++ E+ T V + + ++ LL++D+ L
Sbjct: 138 QEVEEGLAQHKP--VLLFLVHGESST----GVVQPLDGFGELCHRY-QCLLLVDSVASLG 190
Query: 186 AYYQKSLPWGVDIVL 200
G+DI+
Sbjct: 191 GVPIYMDQQGIDIMY 205
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
S + +++LL GD ++ G + +++ + G +V L
Sbjct: 76 GSAHAGMEAMLSNLLEEGDRVLIAV---NGIWAERAVEMSERYGADVRTIEGPPDRPFSL 132
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+ I+ K +++ ++ + + ++ + + QH D LL++D L
Sbjct: 133 ETLARAIE--LHQPKCLFLTHGDSSS----GLLQPLEGVGQICHQH-DCLLIVDAVASLC 185
Query: 186 AYYQKSLPWGVDIVL 200
W +D V
Sbjct: 186 GVPFYMDKWEIDAVY 200
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIEN 151
++ D + Y YR FA+ G + V L K + + +V+I N
Sbjct: 91 VMMLMFDRSVFFPPTYS-CYRIFAKAV---GAKFLEVPLTKDLRIPEVNVGEGDVVFIPN 146
Query: 152 PTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
P NP VF+ + I ++K + LD AYY
Sbjct: 147 PNNPTGHVFEREEIERILKT--GAFVALDE----AYY 177
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDFVDL--RKIENL 136
SG A+ V +L + G+ ++ + R F ++A + GL V+ +D
Sbjct: 58 GSGTLAMEALVKNLFAPGERVLVPVYGKFSE--R-FYEIALEAGLVVERLDYPYGDTPRP 114
Query: 137 IKYIKPNTKMVWI---ENPTNPLMTVFDVKAISAVVKQH-PDILLVLDN-TFLTAYYQKS 191
K + + E T + D+ A++ K+ P+ L+ D T L
Sbjct: 115 EDVAKEGYAGLLLVHSETSTG---ALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL 171
Query: 192 LPWGVDIVL 200
GVD
Sbjct: 172 EAMGVDAAA 180
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDL 130
+G A+ + + + GD ++ G G + +A + G +V L
Sbjct: 92 GTGTAAMEATIANAVEPGDVVLIGV---AGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 148
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
++ ++ +P ++ + E T ++ + + ++ LL++D T L
Sbjct: 149 EELRTALETHRP--AILALVHAETST----GARQPLEGVGELCREF-GTLLLVDTVTSLG 201
Query: 186 AYYQKSLPWGVDIVL 200
WGVD+
Sbjct: 202 GVPIFLDAWGVDLAY 216
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
+NL +I TK + + NP NP + +++ + + ++H + L++D
Sbjct: 165 QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVD 213
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLV 178
G VD +ENL + + PTNP ++T ++ ++ + K++ DI L+
Sbjct: 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLI 243
Query: 179 LDN 181
+DN
Sbjct: 244 IDN 246
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SSG G + ++ + +S G ++ +G + +V G + V
Sbjct: 78 SSGTGIMEASIRNGVSKGGKVLVTIIGAFGK---RYKEVVESNGRKAVVLEYEPGKAVKP 134
Query: 131 RKIENLIKYIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLT 185
+++ ++ + V I E T V + ++ V K+H D L+ +D + +
Sbjct: 135 EDLDDALRKNPD-VEAVTITYNETST----GVLNPLPELAKVAKEH-DKLVFVDAVSAMG 188
Query: 186 AYYQKSLPWGVDIVL 200
K WG+D+V
Sbjct: 189 GADIKFDKWGLDVVF 203
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 33/191 (17%)
Query: 62 RNLERCIASLEEAKHGLCYSSG----LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQV 117
+ E A +K+ + SSG L + A+ + GD++ +
Sbjct: 37 KQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPR--LKKGDEIIVPAVSWSTTY 94
Query: 118 APKI--GLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169
P GL V FVD+ IE+L + + +TK + N L + I+ ++
Sbjct: 95 YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAIL---TVNLLGNPNNFDEINKII 151
Query: 170 KQHPDILLVLDN--TFLTAYYQKSL-PWGVDIVLYSL--TKYM---NGHSDVVMGATVTN 221
DI+L+ DN + + K +G + +S + ++ G G VT+
Sbjct: 152 GGR-DIILLEDNCESMGATFNNKCAGTFG-LMGTFSSFYSNHIATMEG------GCIVTD 203
Query: 222 DDSLQARLKFL 232
D+ + L +
Sbjct: 204 DEEIYHILLCI 214
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 31/126 (24%)
Query: 74 AKHGLCYSSGLGAVTAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGL 123
A G+ + + LL+AGD +I + D Y GG Y PK
Sbjct: 127 ANEGIL--------SCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD 178
Query: 124 -----EVDF-VDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPD 174
++ +D + E I TK V I P NP+ VF ++ + + +H +
Sbjct: 179 QRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-N 234
Query: 175 ILLVLD 180
++++ D
Sbjct: 235 VVIISD 240
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-05
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
+ L+ GD ++ + DVY G R G +D L K
Sbjct: 93 VLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEK----- 147
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ P T+ + + P NP VF +++AI+ + + H D+ L+ D
Sbjct: 148 -ALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISD 191
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 110 TYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNP---LMTV 159
+ ++ G + + DL + + + NP NP MT
Sbjct: 145 LNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTD 201
Query: 160 FDVKAISAVVKQHPDILLVLD 180
+++ I + +H D++++ D
Sbjct: 202 EELRIIGELATKH-DVIVIED 221
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 9e-05
Identities = 46/370 (12%), Positives = 104/370 (28%), Gaps = 69/370 (18%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGD-DVYGGTYRYFA 115
+ +L+ L + + G GA LL V+ + +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT 134
Query: 116 QVAPKIGLEVDFV--------------------DLRKIENLIK-YIKPNTKMVWIENPTN 154
A + D++K++ I + N + N
Sbjct: 135 TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 194
Query: 155 PL----MTVFDVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWG------------- 195
+++ ++K + + KQH I +V+D+ AY+ K+
Sbjct: 195 SAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253
Query: 196 ---VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL 252
D + S K + ++ + +++ + + M + L R +
Sbjct: 254 YKYADALTMSAKK--DPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG--LAGRDM 309
Query: 253 KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312
+ L+E ++L L L +G + +V+
Sbjct: 310 AAMVQGLEEGTE-----EEYLHYRIGQVKYLGDRLREAGIPIQYP------TGGHAVFVD 358
Query: 313 GGAEETRI----FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
+I F +I G+ ++ + T + +R
Sbjct: 359 CKKLVPQIPGDQFPAQAVINALYLE-SGVRAVEIGSFLL---GRDPATGEQKHADMEFMR 414
Query: 369 LSVGVEGYTD 378
L++ YT+
Sbjct: 415 LTIARRVYTN 424
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLR-KIENL 136
+ + GD +I + D Y GG R+ K G + D L
Sbjct: 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175
Query: 137 IKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
TKM+ I P NPL V +++ ++ + K+ ++L V D
Sbjct: 176 EALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSD 221
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 88 TAVTHLLSAGDHIISGDDVYGGTY-RYFAQVAPKIGLEVDF--------VDLRKIENLIK 138
+ +LL GD I+ G G + A +A + G +V + L +I + +
Sbjct: 85 ATLCNLLEDGDVILIGH---TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALL 141
Query: 139 YIKPNTKMVWI---ENPTNPLMTVF-DVKAISAVVKQHPDILLVLDN-TFLTAYYQKSLP 193
KP ++++ ++ T V ++ + A+ QH + LL++D L
Sbjct: 142 IHKP--SVLFLTQGDSST----GVLQGLEGVGALCHQH-NCLLIVDTVASLGGAPMFMDR 194
Query: 194 WGVDIVL 200
W +D +
Sbjct: 195 WEIDAMY 201
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137
A+T L+ GD +I D D Y GG + A P VD+ +
Sbjct: 106 AAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP--HFRVDWQEFAA----- 158
Query: 138 KYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+ T++V + P NP TV+ D A+ + H +I ++ D
Sbjct: 159 -LLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISD 202
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAP----KIGLEVDF-VDLRKIENLIKYIKPNTKMV 147
G +++ + Y AQ A + L DF +D + + + +V
Sbjct: 105 AARPGAKVMAPVPGFV-MYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMA--EHQPAIV 161
Query: 148 WIENPTNPLMTVFDVKAISAVVKQHP----DILLVLD 180
++ P NP +FD + A+V+ L+V+D
Sbjct: 162 YLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVD 198
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLD 180
+ L KY+ T+ + I +P NP ++T D++ I+ V +H D++++ D
Sbjct: 151 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISD 199
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENP 152
++ GD ++ + Y Y+ F + G + F D +E+L + + TK + I +P
Sbjct: 109 IIDDGDEVLIQNPCYP-CYKNFIRFL---GAKPVFCDFT-VESLEEALSDKTKAIIINSP 163
Query: 153 TNPLMTVFDVKAISAVVKQHPDILLVLD 180
+NPL V D + I ++ ++ D
Sbjct: 164 SNPLGEVID-REIYEFAYEN-IPYIISD 189
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 44/188 (23%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIE 134
+G+ + HLL A D ++ + Y +Y A+VA L + LR ++
Sbjct: 94 IGSQEGLAHLLLALTEPEDLLLLPEVAYP-SYFGAARVA---SLRTFLIPLREDGLADLK 149
Query: 135 NLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAY---- 187
+ + + K++ + P NP + + + ++H + L+ DN Y
Sbjct: 150 AVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLIHDN----PYVDQV 204
Query: 188 ---YQKSLP-----WGVDIVLYSLTKYMNGHSDVVM-----GATVTNDDSLQARLKFLQN 234
S + L+SL+K N + G + ++++L +
Sbjct: 205 YEGEAPSPLALPGAKERVVELFSLSKSYN------LAGFRLGFALGSEEALARLERVKGV 258
Query: 235 SMGVVPSP 242
+
Sbjct: 259 IDFNQYAG 266
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRY-----FAQVAPKIGLEVDF-VDLR 131
TA L+ GD +I + D Y GG + ++G ++ +D
Sbjct: 106 TAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPM 165
Query: 132 KIENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
++ TK + + P NPL VF +++ ++++ +QH D++ + D
Sbjct: 166 ELA---GKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITD 213
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIK-PNTKM 146
G + Y + A+ E V ++ ++ I+ +
Sbjct: 112 FGGPGRTALGFQPSYS-MHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDI 167
Query: 147 VWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
V++ P NP V + + ++ P ++++D
Sbjct: 168 VFVTTPNNPTGDVTSLDDVERIINVAPG-IVIVD 200
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 88 TAVTHLLSAGDHIISGD---DVY-------GGTYRY----FAQVAPKIGLEVDF-VDLRK 132
++ L+ GD +I D Y G + D+ D R+
Sbjct: 100 NSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159
Query: 133 IENLIKYIKPNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLD 180
+E TK + + P NPL V+ +++ I+ + +H D L + D
Sbjct: 160 LE---SKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKH-DTLCISD 206
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 111 YRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165
Y A+ G+E V ++ + + K+V++ +P NP + + +
Sbjct: 113 YSVSAETI---GVECRTVPTLDNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDF 168
Query: 166 SAVVKQHP-DILLVLD 180
+++ ++V D
Sbjct: 169 RTLLELTRGKAIVVAD 184
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-IENLIKYIKPNTKMVWIEN 151
+ G+ I Y Y A+V G V L + K+ ++
Sbjct: 102 FAAEGEEIGYVHPSYS-YYGTLAEVQ---GARVRTFGLTGDFRIAGFPERYEGKVFFLTT 157
Query: 152 PTNPLMTVFDVKAISAVVKQHPDILLVLD 180
P PL F ++ I + ++ + LVLD
Sbjct: 158 PNAPLGPSFPLEYIDELARRCAGM-LVLD 185
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 37/185 (20%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------I 133
G + + + GD+++ D Y Y +A + ++L
Sbjct: 116 YGTKNGLVAVPTCVINPGDYVLLPDPGYT-DYLAGVLLA---DGKPVPLNLEPPHYLPDW 171
Query: 134 ENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK 190
+ I TK++++ P NP T A K D +V D + +
Sbjct: 172 SKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA 230
Query: 191 ------SLP--WGVDIVLYSLTKYMNGHSDVVM-----GATVTNDDSLQARLKFLQNSMG 237
+ V I +YSL+K N M G V N D +QA K+ ++
Sbjct: 231 KNPSILASENGKDVAIEIYSLSKGYN------MSGFRVGFAVGNKDMIQALKKYQTHTNA 284
Query: 238 VVPSP 242
+
Sbjct: 285 GMFGA 289
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 133 IENLIKYIKPNTKMVWIENPTNP---LMTVFDVKAISAVVKQHP-----DILLVLD 180
+ L + I +T+ V I +P NP + + +K +S ++++ I ++ D
Sbjct: 162 FDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIAD 217
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 81 SSGLGAV-TAVTHLLSAGDHIISGDD-VYGGTYRYFAQVAPKIGLEVDF--------VDL 130
SG AV + L D ++ + YG R ++A +G+ D+
Sbjct: 63 GSGSYAVEAVLGSALGPQDKVLIVSNGAYGA--R-MVEMAGLMGIAHHAYDCGEVARPDV 119
Query: 131 RKIENLIKYIKPNTKMVWI---ENPT---NPLMTVFDVKAISAVVKQHPDILLVLD 180
+ I+ ++ P + + E T NP+ + A+ ++ ++D
Sbjct: 120 QAIDAILNA-DPTISHIAMVHSETTTGMLNPI------DEVGALAHRY-GKTYIVD 167
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 15/105 (14%)
Query: 83 GLGAVTAVTHLLSA--GDHIISGDDVYGGTYRYFAQVA----PKIGLEVDF-VDLRKIEN 135
G + + ++ + YR V+ +IGL D +D +
Sbjct: 74 VRGIDECFDRISAEFSSMRFVTAWPGFD-GYRARIAVSGLRHFEIGLTDDLLLDPNDLA- 131
Query: 136 LIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
V + NP+NP + + ++ L++D
Sbjct: 132 ----QVSRDDCVVLANPSNPTGQALSAGELDQLRQRAG--KLLID 170
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 84 LGAVTAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------- 132
+G+ + HL+ A GD I+ + Y + Y A +A G +V V L
Sbjct: 106 IGSKEGLAHLMLATLDHGDTILVPNPSYP-IHIYGAVIA---GAQVRSVPLVPGIDFFNE 161
Query: 133 IENLIKYIKPNTKMVWIE---NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY 187
+E I+ P +M+ + NPT + + + + A+ KQ+ D+++V D AY
Sbjct: 162 LERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDL----AY 214
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 108 GGTYRYFAQVAPKI-GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNP---LMTVFDVK 163
G F P I L ++ +I T M+ + PTNP ++T ++
Sbjct: 145 GLEDDLFVSARPNIELLPEGQFKYH-VDFEHLHIGEETGMICVSRPTNPTGNVITDEELM 203
Query: 164 AISAVVKQHPDILLVLDN 181
+ + QH +I LV+DN
Sbjct: 204 KLDRLANQH-NIPLVIDN 220
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 100.0 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 100.0 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 100.0 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 100.0 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 100.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 100.0 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 100.0 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 100.0 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 100.0 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 100.0 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.98 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.98 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.98 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.98 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.98 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.98 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.98 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.98 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.97 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.97 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.97 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.97 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.97 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.96 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.96 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.96 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.96 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.92 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.96 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.95 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.95 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.95 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.95 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.95 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.95 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.95 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.95 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.95 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.95 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.94 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.94 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.94 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.94 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.94 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.94 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.94 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.94 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.94 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.94 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.93 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.93 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.93 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.93 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.93 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.93 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.93 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.93 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.93 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.93 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.93 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.92 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.92 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.92 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.92 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.92 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.92 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.92 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.92 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.91 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.91 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.91 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.9 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.9 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.9 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.89 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.89 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.89 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.89 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.89 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.89 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.89 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.88 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.88 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.88 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.88 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.88 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.87 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.87 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.87 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.87 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.87 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.87 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.87 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.86 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.86 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.86 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.86 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.86 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.86 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.86 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.86 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.86 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.85 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.85 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.84 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.84 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.84 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.84 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.83 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.83 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.72 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.78 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.69 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.58 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.5 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.5 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.48 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.45 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.37 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.33 |
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=405.27 Aligned_cols=382 Identities=47% Similarity=0.808 Sum_probs=342.8
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
|.+.+++.|.++|+|..++... ++..+|++++++|.....+. ...+.|+|+++|...+|+++||++.|.++.++++||
T Consensus 14 ~~~~~~~~t~~~~~~~~~~~~~-~~~~~pi~~~s~~~~~~~~~-~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG 91 (400)
T 3nmy_A 14 GDRALSLATLAIHGGQSPDPST-GAVMPPIYATSTYAQSSPGE-HQGFEYSRTHNPTRFAYERCVAALEGGTRAFAFASG 91 (400)
T ss_dssp ---CCCHHHHHHHTTCCCCTTT-CBSSCCBCCCSBBBCSBTTB-SSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred cccCCCcchheeeCCCCCCCCC-CCcCCCccccceeeccCccc-cCCcccccCCCHHHHHHHHHHHHHhCCCCEEEecCH
Confidence 4556789999999998876544 57888999999998776544 346889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCccchHHHHHHh-cccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCH
Q psy12791 84 LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQV-APKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV 162 (393)
Q Consensus 84 ~~al~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~-~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~ 162 (393)
++|+.++..++++||+|++++++|++++..+... ++..|++++.++.+|++++++++.+++++|++++|+||||.++|+
T Consensus 92 ~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l 171 (400)
T 3nmy_A 92 MAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDI 171 (400)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecH
Confidence 8888446778899999999999999887766666 677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEE-EEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMG-ATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||+++|+....+| +++.+++++.++++......+...+
T Consensus 172 ~~i~~la~~~-g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~ 250 (400)
T 3nmy_A 172 AAIAVIARKH-GLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQG 250 (400)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCC
T ss_pred HHHHHHHHHc-CCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999999 9999999999987777777789999999999999654333456 5676668899999888888888899
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
+..++++.+.++.+..+++++.++++.+.++|+++|.+..+.+|++++.+.+.++.++++++|++++|.++++.+...+|
T Consensus 251 ~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~ 330 (400)
T 3nmy_A 251 PFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRF 330 (400)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997556789999
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
+++++.+.++.++|+.+|++++|..++|..++.+....+|+.+++||||+|.+++++++++|.+||+
T Consensus 331 ~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 331 CEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp HHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=405.30 Aligned_cols=376 Identities=31% Similarity=0.508 Sum_probs=338.5
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
..++.|.++|+|..++. . ++..+|+++++++..+..+ .....+.|+||++|...+|++++|+++|.++.++
T Consensus 24 ~~~~~t~~~~~~~~~~~-~-~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~ 101 (414)
T 3ndn_A 24 GVSQATVGVRGGMLRSG-F-EETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFA 101 (414)
T ss_dssp TCCHHHHHHHTTCCCCT-T-CBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCccceeeecCCCCCC-C-CCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEE
Confidence 45799999999987643 2 5788999999999876531 1134688999999999999999999999989999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+++|++|+ .++.+++++||+|++++|+|+++...+...++..|+++++++.+|++++++++++++++|++++|+||||.
T Consensus 102 ~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~ 181 (414)
T 3ndn_A 102 TASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQS 181 (414)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCC
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCc
Confidence 99999998 77788899999999999999987766666667799999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHH-HHHHHHHhc
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQA-RLKFLQNSM 236 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~-~~~~~~~~~ 236 (393)
+.|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||++ |.+| +++|+++++ ++.+. .++......
T Consensus 182 ~~~l~~i~~la~~~-g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l-~~~G~~~~G~vv~~-~~~~~~~l~~~~~~~ 258 (414)
T 3ndn_A 182 LVDIAAVTELAHAA-GAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHI-DGQGRVLGGAILGD-REYIDGPVQKLMRHT 258 (414)
T ss_dssp CCCHHHHHHHHHHT-TCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTT-TCSSCCCCEEEEEC-HHHHTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHc-CCEEEEECCCcccccCCchhcCCCeEeccCCccc-cCCCCceEEEEEEC-HHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999987766777788999999999999 4667 899999998 55554 677666677
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-- 314 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (393)
+...++..++++.+.++.+..+++++.++++.+.++|+++|.+..+.+|++++.+.+.++.++++++|++++|.++++
T Consensus 259 g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~ 338 (414)
T 3ndn_A 259 GPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED 338 (414)
T ss_dssp CCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred --HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 315 --AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 315 --~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
.+++.+|+++++.+++++++|+.+|+.++|+.++|..++.++...+|..+++||||+|.+++++++++|.++|
T Consensus 339 ~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 339 VAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp GHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999987
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-52 Score=395.95 Aligned_cols=387 Identities=57% Similarity=0.948 Sum_probs=333.1
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEecc
Q psy12791 3 FLPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS 82 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~ 82 (393)
+|++.++++|+++|+|..++....++..+|++.++++....... ...+.|+||++|...+||+++|+++|.++++++++
T Consensus 12 ~~~~~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~-~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~~~s 90 (403)
T 3cog_A 12 FLPHFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ-HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFAS 90 (403)
T ss_dssp CCCCCTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC---------------CHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred hhcccCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccc-cCCCcccCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence 36666789999999998765543147899999999887655433 22477999999999999999999999989999999
Q ss_pred HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|++++ .++. ++++||+|++++|+|++++..+...++..|++++.++.+|++++++.+++++++|++++|+||||.++|
T Consensus 91 G~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~ 169 (403)
T 3cog_A 91 GLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVID 169 (403)
T ss_dssp HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeC
Confidence 99778 6666 889999999999999987777777778899999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC
Q psy12791 162 VKAISAVVKQHPD-ILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240 (393)
Q Consensus 162 ~~~l~~l~~~~~~-~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
+++|.++|+++ | +++|+|++|+.+....++..++|++++|+||+++|+.|+|+||++++++++.+.++.....++...
T Consensus 170 l~~i~~la~~~-g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~ 248 (403)
T 3cog_A 170 IEGCAHIVHKH-GDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP 248 (403)
T ss_dssp HHHHHHHHTSS-SCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHc-CCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCC
Confidence 99999999999 9 999999999998766777788999999999999767777899999976889898887777778888
Q ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
++..++++.+.++.+..+++++.++...+.+++++++.+..+.++++++.+.+.++.+...+.++++.|.+++..+...+
T Consensus 249 ~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 328 (403)
T 3cog_A 249 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEI 328 (403)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHH
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHH
Confidence 89999888889999988999999999999999999999999999999988888888887778899999999656678889
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
+++.++++..+.++|+.+|+.+.|..+.|...+.+.....|..+++||||+|.++++++++++.++|+++.+
T Consensus 329 ~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 329 FLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 999999888899999999999999888888888888888888889999999999999999999999987653
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=390.92 Aligned_cols=373 Identities=42% Similarity=0.700 Sum_probs=336.3
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV- 87 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al- 87 (393)
++.|.++|+|..++... ++..+|+..++++..+........+.|+|++++...++++++|+++|.++.+++++|++++
T Consensus 17 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~ 95 (392)
T 3qhx_A 17 GLATRAIHSGYRPDPAT-GAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAAD 95 (392)
T ss_dssp CHHHHHHHSSCCCCTTT-CBSSCCBCCCSBBCCSSTTCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHH
T ss_pred CcchhheeCCCCCCCCC-CCccCCcccCcceEecCcccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 68999999998876544 4788899999998877665544578999999999999999999999999999999999888
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
.++..++++||+|+++.++|++++..+...++..|++++.++.+|++++++++.+++++|++++|+||||.+.|+++|.+
T Consensus 96 ~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 175 (392)
T 3qhx_A 96 CALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQ 175 (392)
T ss_dssp HHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHH
Confidence 77777889999999999999987777777778899999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
+|+++ |+++|+|++|+.++...+...++|+++.|+||+++ .+| +|+||++++++++.+.++......+...++..++
T Consensus 176 la~~~-g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg-~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 253 (392)
T 3qhx_A 176 LGADS-SAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIG-GHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAY 253 (392)
T ss_dssp HHHHH-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHc-CCEEEEECCCcccccCChHHhCCcEEEEcCccccC-CCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999 99999999999877667777789999999999995 555 8999999987789998888877788889999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
++.+.++.+..+++++.++.+.+.++|+.+|.+..+.+|+++..+.+.++.+.+++.|++++|.++++.+..++|++.++
T Consensus 254 ~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~ 333 (392)
T 3qhx_A 254 LTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTN 333 (392)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCS
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCC
Confidence 99999999998999999999999999999999999999999999999999999999999999999766788999999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
..++++++|+.+++.+.|..+++..++.+ .+|..++.||||+|.++++++++++.++|
T Consensus 334 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 334 IFILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp SSEECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CceECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 99999999999999988887777765544 67888999999999999999999999987
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=401.30 Aligned_cols=376 Identities=31% Similarity=0.468 Sum_probs=296.5
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC-------CCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
+|.|.++|+|..+++.. ++..+|++++++|..+..+.. ...+.|+|+++|...+|++++|+++|.+++++++
T Consensus 26 ~~~t~~~h~~~~~~~~~-~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~ 104 (430)
T 3ri6_A 26 GFTTRALHVPKAKRDVH-GALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLALG 104 (430)
T ss_dssp CHHHHHHCCC---------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CcchhheeCCCCCCCCC-CCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEEC
Confidence 38999999998776543 478889999999887654321 2357899999999999999999999999999999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
||++|+ .++.+++++||+|++++++|++++..+...++..|++++.++.+|++++++++++++++|++++|+||||.++
T Consensus 105 sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~ 184 (430)
T 3ri6_A 105 SGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVA 184 (430)
T ss_dssp CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeec
Confidence 999888 7778889999999999999998877666677889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecCh-HH--------------
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDD-SL-------------- 225 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~~-------------- 225 (393)
|+++|.++|+++ |+++|+|++|+.+....+...++|+++.|+||+++|+....+|+++.+.. .+
T Consensus 185 dl~~i~~la~~~-g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g 263 (430)
T 3ri6_A 185 DLEALSKVVHAK-GIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG 263 (430)
T ss_dssp CHHHHHHHHHTT-TCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG
T ss_pred CHHHHHHHHHHc-CCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc
Confidence 999999999999 99999999999887777777889999999999996544445777774322 11
Q ss_pred ----HHHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc
Q psy12791 226 ----QARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300 (393)
Q Consensus 226 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~ 300 (393)
+++++ ......+...++..++++.++++.+..+++++.++++.+.++|+++|.+.++.+|++++.+.|.++.+++
T Consensus 264 ~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~ 343 (430)
T 3ri6_A 264 PMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF 343 (430)
T ss_dssp GGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC
T ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC
Confidence 23332 2334568888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc-eEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 301 SGTSG-MLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 301 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
++|+ +++|.++ +.+.+.+|+++++.++++.++|+.+|++++|..++|..++.++....|..+++||||+|.|+++++
T Consensus 344 -g~Gg~~lsf~l~-~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl 421 (430)
T 3ri6_A 344 -RYAGSILTFELE-SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDL 421 (430)
T ss_dssp -SSCCSEEEEECS-SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHH
T ss_pred -CCCceEEEEEEC-CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHH
Confidence 9999 9999995 788999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHH
Q psy12791 380 IADLDQALR 388 (393)
Q Consensus 380 i~~l~~al~ 388 (393)
+++|.+||+
T Consensus 422 ~~dl~~al~ 430 (430)
T 3ri6_A 422 KEDILQALC 430 (430)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999999873
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=394.17 Aligned_cols=379 Identities=34% Similarity=0.554 Sum_probs=335.5
Q ss_pred Cc-cceeeccCCCCC--CCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 9 AF-ATKAVHIGSEPD--QWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 9 ~~-~~~~~~~g~~~~--~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
+| +|+++|+|..++ +.. .+..+|++++++|..+..+. -...+.|++++++...++|+++|+++|.++++
T Consensus 55 ~~~~t~~~~~~~~~~~~~~~-~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~~~~v 133 (445)
T 1qgn_A 55 NSDGSVAIHAGERLGRGIVT-DAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL 133 (445)
T ss_dssp CSHHHHHHHTTTTTCCSSCC-SBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCcccEEEecCCCCCcCCCC-CCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCCCcEE
Confidence 46 899999998875 433 58899999999998654221 12358899999999999999999999998999
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCC-cEEEEecCCCCc
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNT-KMVWIENPTNPL 156 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~-~~v~l~~p~npt 156 (393)
++++|++++ .++.+++++||+|++++++|++++..+...++..|+++++++.+|++++++++++++ ++|++++|+|||
T Consensus 134 ~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~Npt 213 (445)
T 1qgn_A 134 LMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPF 213 (445)
T ss_dssp EESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTT
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 999999778 777778899999999999999877666666788999999999999999999998889 999999999999
Q ss_pred ccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 157 MTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 157 G~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
|.+.|+++|.++|+++ |+++|+|++|+.++...+...++|++++|+||+++|...+++||++++ +++++.++.....+
T Consensus 214 G~v~dl~~I~~la~~~-g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~-~~l~~~l~~~~~~~ 291 (445)
T 1qgn_A 214 LRCVDIELVSKLCHEK-GALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHIL 291 (445)
T ss_dssp CCCCCHHHHHHHHHHT-TCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHc-CCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEEC-HHHHHHHHHHHHHh
Confidence 9999999999999999 999999999998776667777899999999999964434689999997 78888887777777
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
|...++..++++.++++.+..+++++.++++.+.++|+++|.+..+.+|++++.+.|.++.+++++.+++++|.+++..+
T Consensus 292 g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~ 371 (445)
T 1qgn_A 292 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLL 371 (445)
T ss_dssp CCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHH
T ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHH
Confidence 88888988888889999998899999999999999999999988889999998999999999988899999999976667
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....++++++.+++++++|+.+|+..+|..++|..++.+....+|..+++||||+|.++.++++++|.++|+++
T Consensus 372 ~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 372 TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 79999999998899999999999998888888988888888899998999999999999999999999998753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=381.76 Aligned_cols=383 Identities=48% Similarity=0.780 Sum_probs=332.3
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
+++.+++.|.++|+|..++ . .++..+|++++++|..+........+.|++++++...++|+++|+++|.++.+++++|
T Consensus 2 ~~~~~~~~t~~~~~~~~~~-~-~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sG 79 (393)
T 1n8p_A 2 LQESDKFATKAIHAGEHVD-V-HGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSG 79 (393)
T ss_dssp CCSSCCHHHHHHHTTCCCC-S-SCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCH
T ss_pred CCCCCCccceEEecCCCcc-C-CCCcCCCcccccceeeccccccccCcceecCCChhHHHHHHHHHHHhCCCcEEEECCh
Confidence 4667789999999998765 2 2689999999999987654332246889999999999999999999999899999999
Q ss_pred HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCH
Q psy12791 84 LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDV 162 (393)
Q Consensus 84 ~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~ 162 (393)
++++ .++. ++++||+|+++.|+|++++..+...++..|++++.++.+| +++++++++++++|++++|+||||.++|+
T Consensus 80 t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l 157 (393)
T 1n8p_A 80 SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDI 157 (393)
T ss_dssp HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCH
T ss_pred HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCH
Confidence 8788 6666 8899999999999999877666667888999999999888 99999998889999999999999999999
Q ss_pred HHHHHHHHhCC---CcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHHHHHHHHHhcCC
Q psy12791 163 KAISAVVKQHP---DILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 163 ~~l~~l~~~~~---~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
++|.++|++++ |+++|+|++|+.+....+...++|+++.|+||++ |++|+|+ ||++++++++++.++.....++.
T Consensus 158 ~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~-g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~ 236 (393)
T 1n8p_A 158 QKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYI-NGHSDVVLGVLATNNKPLYERLQFLQNAIGA 236 (393)
T ss_dssp HHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccc-cCCCCceeEEEEeCCHHHHHHHHHHHHhcCC
Confidence 99999999983 7999999999987665555568999999999999 6899988 99998657888888777666777
Q ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCC-cceEeCCCCCCCcchHHHhhhcCC-C-cceEEEEEcCCH
Q psy12791 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPC-VKGVLHPGLPSHPNHELAKSQWSG-T-SGMLSFYVNGGA 315 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 315 (393)
..++..++.+...++.+..++++..++...+.++|++++. +..+.+|++...+.+.++.+..++ . +++++|.+++..
T Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 316 (393)
T 1n8p_A 237 IPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA 316 (393)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH
Confidence 7788888877788888888999999999999999998887 777888998888888888877666 6 899999997566
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++.+.+++.++..+++++.|+++++...|....|..++.+...++|..++.||||+|.++++++++++.++|+++.
T Consensus 317 ~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 317 EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 7899999999988999999999998887777788777777777888888999999999999999999999998764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-51 Score=389.40 Aligned_cols=374 Identities=28% Similarity=0.486 Sum_probs=322.3
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC--------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ--------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
+++|+++|+|..+++.. ++..+|++.+++|..+..+. ....+.|+|+++|..+++|+++|+++|.++.+++
T Consensus 25 ~~~t~~~~~~~~~~~~~-~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ 103 (415)
T 2fq6_A 25 KLDTQLVNAGRSKKYTL-GAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLF 103 (415)
T ss_dssp CHHHHHHHTTCCHHHHT-TBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcCceeEeCCCCCCCCC-CCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEe
Confidence 78999999998765433 57899999999998654321 0235889999999999999999999999889999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
++|++++ .++.+++++||+|+++.++|++++..+...++..|+++++++.+|+++++++++++|++|++++|+||||.+
T Consensus 104 ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v 183 (415)
T 2fq6_A 104 PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEV 183 (415)
T ss_dssp SSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEe
Confidence 9999888 777788899999999999999988777777788899999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHh--CCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHHhc
Q psy12791 160 FDVKAISAVVKQ--HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 160 ~~~~~l~~l~~~--~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
+|+++|.++|++ + |+++|+|++|+.++...++..++|+++.|+||+++ ++| ..+|+++++ +++++.++......
T Consensus 184 ~dl~~I~~la~~~~~-g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg-~~g~~~~G~l~~~-~~~~~~l~~~~~~~ 260 (415)
T 2fq6_A 184 HDVPAIVAAVRSVVP-DAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLV-GHSDAMIGTAVCN-ARCWEQLRENAYLM 260 (415)
T ss_dssp CCHHHHHHHHHHHCT-TCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTT-CSSSCCCEEEEEC-TTTHHHHHHHHHHT
T ss_pred ecHHHHHHHHHhhcC-CCEEEEECCCcccccCCccccCCeEEEEeCccccC-CCCCceEEEEEeC-HHHHHHHHHHHHhc
Confidence 999999999999 9 99999999999876666777789999999999995 555 557999987 56778887766667
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--C
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--G 314 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 314 (393)
|...++..++.+.+.++.+..++++..+++..+.++|+++|.+.++.+|+++..+.+.++.++..+.+++++|.+++ +
T Consensus 261 G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~ 340 (415)
T 2fq6_A 261 GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN 340 (415)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC
T ss_pred CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC
Confidence 77788888888888888888899999999999999999999998899999998888888888888889999999965 2
Q ss_pred HHHHHHHHHhcCccccccccCCccccccC--cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADL--PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~--~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++.+.|++.++.+++++++|+.||+... |..+++... ..++|..++.||||+|.++++++++++.++|+++
T Consensus 341 ~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 341 NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 78899999999999999999999998875 544443211 0135666799999999999999999999999864
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=370.51 Aligned_cols=376 Identities=37% Similarity=0.608 Sum_probs=330.4
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
.+++|.++|+| +++.. ++..+|++.+++|.....+ .....+.|+++++|...++++++|+++|.++.+++
T Consensus 4 ~~~~t~~~~~~--~~~~~-~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~ 80 (389)
T 3acz_A 4 QDITTTLLHPK--GDHVL-HSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF 80 (389)
T ss_dssp CCHHHHHHSCS--SCCST-TBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcceeEEecC--CCCCC-CCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence 46889999999 33322 5889999999998865421 11346889999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+||++++ .++..++++||+|++++++|++++..+...++..|++++.++..|++++++.+++++++|++++|+||||.+
T Consensus 81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 160 (389)
T 3acz_A 81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKV 160 (389)
T ss_dssp SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCee
Confidence 9999888 666677899999999999999877666666788999999999999999999999899999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHHHHHHHHHhcCC
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
+|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||++ |.+|.|+ ||++++++++++.++.....++.
T Consensus 161 ~~l~~i~~~~~~~-~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~-~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~ 238 (389)
T 3acz_A 161 SDIKGIAVVCHER-GARLVVDATFTSPCFLKPLELGADIALHSVSKYI-NGHGDVIGGVSSAKTAEDIATIKFYRKDAGS 238 (389)
T ss_dssp CCHHHHHHHHHHH-TCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTT-TCSSCCCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHc-CCEEEEECCCccccccCccccCCeEEEECChhhc-cCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence 9999999999999 9999999999987766677778999999999999 4677787 99999843888888777766788
Q ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
..++..++.+.+.++.+..+++++.++...+.++|++++.+..+.++++++.+.+.++.+..++.+++++|.+++ .+..
T Consensus 239 ~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~ 317 (389)
T 3acz_A 239 LMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAA 317 (389)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHH
T ss_pred CCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHH
Confidence 888988888888999988899999999999999999999999999999998888888888878889999999964 7788
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..+++++++...+.++|+.+|+...+....|..++.+.....|.++++||+|++.++++++++++.++|++
T Consensus 318 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 318 KKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALEL 388 (389)
T ss_dssp HHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 99999999888899999999999988888888888888888898889999999999999999999999864
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=362.40 Aligned_cols=380 Identities=37% Similarity=0.595 Sum_probs=306.4
Q ss_pred CCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Q psy12791 7 DTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC 79 (393)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~ 79 (393)
..++.|.++|+|..+++.. .+...|.++++++..+.... ....+.|++++++...++++.+|+++|.++.++
T Consensus 7 ~~~~~t~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~ 85 (398)
T 1gc0_A 7 LPGFATRAIHHGYDPQDHG-GALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLA 85 (398)
T ss_dssp CCCHHHHHHHTTCCGGGGT-TBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcCceeEeCCCCCCCCC-CCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 3468899999998765433 47788888888877654221 123467899999999999999999999999999
Q ss_pred eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 80 YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 80 ~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+++|++++ .++..++++||+|+++.++|+++...+...++..|++++.++.+|++++++.+++++++|++++|+||||.
T Consensus 86 ~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 165 (398)
T 1gc0_A 86 LASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMH 165 (398)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred ECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcc
Confidence 99998778 77777889999999999999987666655567889999999999999999999989999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHH-HHHHHHHh-
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQA-RLKFLQNS- 235 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~-~~~~~~~~- 235 (393)
++|+++|.++|+++ |+++|+|++|+.+....++..++|+++.|+||++ |.+|.|+ ||++++ +++++ .++.....
T Consensus 166 ~~~l~~i~~l~~~~-~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~-~~~~~~~~G~l~~~-~~~~~~~~~~~~~~~ 242 (398)
T 1gc0_A 166 MADIAGVAKIARKH-GATVVVDNTYCTPYLQRPLELGADLVVHSATKYL-SGHGDITAGIVVGS-QALVDRIRLQGLKDM 242 (398)
T ss_dssp CCCHHHHHHHHGGG-TCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT-TCSSSCCCEEEEEC-HHHHHHHHHTHHHHH
T ss_pred cccHHHHHHHHHHc-CCEEEEECCCcccccCCchhhCceEEEECCcccc-CCCCCCeEEEEEEC-hHHHHHHHHHHhhcc
Confidence 99999999999999 9999999999987766666678999999999999 5677786 999997 55444 66655555
Q ss_pred cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
++...++..++.+.+.++.+..++++..++.+.+.++|++++.+..+.+|++++.+.+.++.+..++.++++.|.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (398)
T 1gc0_A 243 TGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGI 322 (398)
T ss_dssp TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHH
T ss_pred CCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCH
Confidence 67778888888888888988889999999999999999999998888899998888888877766778899999996445
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+....+++++++.....++|+.+++++++....|...+.+....+|..+++||+|++.++++++++++.++|+++
T Consensus 323 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 323 GAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 678899999998888899999999999888888888888888889998999999999999999999999999875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=359.87 Aligned_cols=382 Identities=37% Similarity=0.605 Sum_probs=323.4
Q ss_pred CCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
+++++.|.++|+|.. +.. +.+...|.++++.+..+... .....+.|++.+++..+++++++|+++|.++.+
T Consensus 4 ~~~~~~t~~~~~~~~-~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i 81 (404)
T 1e5e_A 4 ERMTPATACIHANPQ-KDQ-FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACV 81 (404)
T ss_dssp CCCCHHHHHHHSSCC-CCT-TCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCccceeeecCCC-CCC-CCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEE
Confidence 446789999999987 332 35677888888877754421 112357788888898999999999999999899
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
++++|++++ .++.+++++||+|+++.|+|+++...+...++..|++++.++.+|++++++.+.+++++|++++|+||||
T Consensus 82 ~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG 161 (404)
T 1e5e_A 82 ATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTL 161 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTC
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCC
Confidence 999999778 7777788999999999999997655444467889999999999999999999998999999999999999
Q ss_pred cccCHHHHHHHHHh-CCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHH-HHHHHHH
Q psy12791 158 TVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQA-RLKFLQN 234 (393)
Q Consensus 158 ~~~~~~~l~~l~~~-~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~-~~~~~~~ 234 (393)
.++|+++|.++|++ + |+++|+||+|+.+.+..++..++|+++.|+||++ |.+|.|+ ||++++ +++++ .++....
T Consensus 162 ~v~~l~~i~~la~~~~-~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~-~~~g~ri~G~~~~~-~~~~~~~l~~~~~ 238 (404)
T 1e5e_A 162 KIIDMERVCKDAHSQE-GVLVIADNTFCSPMITNPVDFGVDVVVHSATKYI-NGHTDVVAGLICGK-ADLLQQIRMVGIK 238 (404)
T ss_dssp CCCCHHHHHHHHHTST-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEEC-HHHHHHHHHTCCC
T ss_pred cccCHHHHHHHHHhhc-CCEEEEECCCchhhhCCccccCCEEEEEcCcccc-CCCCCCeEEEEEEC-HHHHHHHHHHHHH
Confidence 99999999999999 9 9999999999988765566678999999999999 5889997 999998 66666 6665544
Q ss_pred hc-CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 235 SM-GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
.+ +...++..++++.+.++.+..++++..++.+.+.+++++++.+..+.++.+++.+.+.++....++.++++.|.+++
T Consensus 239 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~ 318 (404)
T 1e5e_A 239 DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS 318 (404)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred hCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC
Confidence 45 66678888888888888888889999999999999999998888889999988888888887777888999999954
Q ss_pred CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 314 GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+....+++++++...+.++|+.+|++..+....+..++.+.....|.++++||||++.++.+++++++.++++++.+
T Consensus 319 ~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 319 GFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 397 (404)
T ss_dssp HHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 3356788899888877788999999999988888888888888888888789999999999999999999999987643
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=353.46 Aligned_cols=376 Identities=32% Similarity=0.545 Sum_probs=317.7
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEec
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYS 81 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~ 81 (393)
++.|.++|+|..+++.. ++..+|++++++|..+..+. ....+.|+++.++...++++++|+++|.++.++++
T Consensus 2 ~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~ 80 (421)
T 2ctz_A 2 RFETLQLHAGYEPEPTT-LSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA 80 (421)
T ss_dssp CHHHHHHHTTCCCCTTT-CBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CcceeeeeCCCCCCcCC-CCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEec
Confidence 56899999998776543 57889999999988654211 12357799998999999999999999998899999
Q ss_pred cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee-CCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 82 SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV-DLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 82 ~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~-~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+|++++ .++..++++||+|+++.++|+++...+...++..|++++.+ +.+|++++++.+++++++|++++|+||||.+
T Consensus 81 sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~ 160 (421)
T 2ctz_A 81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNI 160 (421)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcc
Confidence 998888 77777789999999999999987666655567889999999 9889999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCcc-CcccccCCCCCcCcEEEEcccccccCCCCceEEEEEec--ChHH----HHHHH--
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTF-LTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTN--DDSL----QARLK-- 230 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~-~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~--~~~~----~~~~~-- 230 (393)
+|+++|.++|+++ |+++|+|++| +.++...++..++|+++.|+||+++ .+|.++|++++. ++++ .+.+.
T Consensus 161 ~~l~~i~~~a~~~-g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~-~~g~~~G~~~~~~~~~~~~~~~~~~l~~~ 238 (421)
T 2ctz_A 161 PDLEALAQAAREK-GVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVG-GHGAVIAGAIVDGGNFPWEGGRYPLLTEP 238 (421)
T ss_dssp CCHHHHHHHHHHH-TCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred cCHHHHHHHHHHc-CCEEEEECCcccccccCCccccCCeEEEECCccccc-CCCCcEEEEEEeccchhhcccchhhhccc
Confidence 9999999999999 9999999999 7665445556689999999999994 678788877764 2221 11111
Q ss_pred --------------------H----HHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCC
Q psy12791 231 --------------------F----LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPG 286 (393)
Q Consensus 231 --------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~ 286 (393)
. ....+|...++..++++...++.+..+++++.++++++.++|+++|.+..+.+|+
T Consensus 239 ~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~ 318 (421)
T 2ctz_A 239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG 318 (421)
T ss_dssp BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred cchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCC
Confidence 0 1123566778888888889999998888988899999999999999998888899
Q ss_pred CCCCcchHHHhhhc-CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCC
Q psy12791 287 LPSHPNHELAKSQW-SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365 (393)
Q Consensus 287 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 365 (393)
++..+.|.++.+++ ++.++++.|.+.+..+....++++++..+++.++|+.+++..++....|..++.+....+|+.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~ 398 (421)
T 2ctz_A 319 LPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE 398 (421)
T ss_dssp STTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred CCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCC
Confidence 98888999988887 67899999999644578899999999988999999999998888888898888888888999899
Q ss_pred eEEEEecCCChHHHHHHHHHHH
Q psy12791 366 LVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 366 ~iRls~~~~~~~~~i~~l~~al 387 (393)
.||+|+|.+++|+++++|.++|
T Consensus 399 ~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 399 MVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp EEEEECCSSCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999886
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=341.30 Aligned_cols=381 Identities=38% Similarity=0.624 Sum_probs=318.2
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
+++.|.++|+|..+++.. ++..+|+.+++++....... ...+.|++|+++...++++++|++++.++.+++++|++++
T Consensus 3 ~~~~t~~~~~~~~~~~~~-~~~~~pi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~ 80 (386)
T 1cs1_A 3 RKQATIAVRSGLNDDEQY-GCVVPPIHLSSTYNFTGFNE-PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAI 80 (386)
T ss_dssp CCHHHHHHHTTTTCCTTT-CBSSCCBCCCSBBCCSBTTB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred CCcceeEEecCCCccccC-CCCCCCccccceeeccccCC-CCCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence 467899999998765433 58899999999998755433 3468899999999999999999999998999999997778
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++..++++||+|+++.|+|++++..+...++..|++++.++.+|++++++.+++++++|++++|+||||.++|+++|.
T Consensus 81 ~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~ 160 (386)
T 1cs1_A 81 HLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC 160 (386)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHH
Confidence 7777778999999999999998776666667888999999999999999999988899999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
++|+++ |+++|+||+|+.+....+...++|+++.|+||+++ .+|.|+ ||++++++++.+.++.....++...++..+
T Consensus 161 ~l~~~~-~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~-~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 238 (386)
T 1cs1_A 161 HLAREV-GAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLN-GHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDS 238 (386)
T ss_dssp HHHHHT-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHH
T ss_pred HHHHHc-CCEEEEECCCcccccCCccccCceEEEEcCccccc-CCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999999 99999999999876655556688999999999994 667675 999998558888887776666666788887
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 246 WLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
+.+...++.+..++++..++...+.++|++++.+..+.++.+.+.+.+.+.....++.++++.|.+++..+....+++..
T Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (386)
T 1cs1_A 239 YLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGL 318 (386)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTC
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhC
Confidence 77777778888888889999999999999988888788898888877777776667778999999965545666666665
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
++...+.++|+.+++.+.+....+...+.+....+|..+++||+|++.++++++++++.++|+++.+
T Consensus 319 gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~~ 385 (386)
T 1cs1_A 319 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANK 385 (386)
T ss_dssp SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTC
T ss_pred CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhhc
Confidence 5544444578888888777666666667666777788789999999999999999999999998764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=346.80 Aligned_cols=379 Identities=39% Similarity=0.656 Sum_probs=316.7
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
+++.|+++|+|..++... .+...|.++++.+..+... .....+.|++++++...++++++++++|.++.+++
T Consensus 7 ~~~~t~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~ 85 (398)
T 2rfv_A 7 YGFNTQIVHAGQQPDPST-GALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT 85 (398)
T ss_dssp SCHHHHHHHTTCCCCTTT-CCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCceeEeecCCcCccCC-CCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 468899999998764432 4566777777766654311 11235778888899999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
++|++++ .++..++++||+|+++.|+|+++...+...++..|.+++.++.+|++++++.+++++++|++++|+||||.+
T Consensus 86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 165 (398)
T 2rfv_A 86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSL 165 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcc
Confidence 9999888 777778899999999999999866555555578899999999999999999999899999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceE-EEEEecChHHHH-HHHHHHHhc-
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVM-GATVTNDDSLQA-RLKFLQNSM- 236 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~-G~~~~~~~~~~~-~~~~~~~~~- 236 (393)
+|+++|.++|+++ |+++|+||+|+.+....+...++|+++.|+||++ |.+|.|+ ||++++ +++++ .++.....+
T Consensus 166 ~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~-~~~g~~~~G~~~~~-~~~~~~~~~~~~~~~~ 242 (398)
T 2rfv_A 166 VDIETVAGIAHQQ-GALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYI-NGHGDVIGGIIVGK-QEFIDQARFVGLKDIT 242 (398)
T ss_dssp CCHHHHHHHHHHT-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEEC-HHHHHHHHHTHHHHTT
T ss_pred cCHHHHHHHHHHc-CCEEEEECCCcccccCCchhhCCcEEEEeCcccc-cCCCCceEEEEEEC-HHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999987765566668999999999999 4688887 999998 66665 666555555
Q ss_pred CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 237 GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
+...++..++.+.+.++.+..++++..++...+.++|++++.+..+.++.+++.+.+.+.....++.+++++|.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 322 (398)
T 2rfv_A 243 GGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLE 322 (398)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHH
T ss_pred CCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHH
Confidence 66778888888888888888888888999999999999998888888999988887777776656778999999954346
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....+++.++..++.+++|+.++++.++....+..++.+.....|..++.||||++.++++++++++.++|+++
T Consensus 323 ~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 323 AGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 78889999988899999999998887776667776677777777887899999999999999999999999875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=343.75 Aligned_cols=374 Identities=31% Similarity=0.500 Sum_probs=315.7
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC------CCCCccccCCCCchHHHHHHHHHHHhCCCcEEEecc
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS 82 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~ 82 (393)
++.|.++|+|..++ . .++..+|+..+.++.....+. ....+.|+++.++...++|+.+|+++|.++.+++++
T Consensus 2 ~~~t~~~~~~~~~~-~-~~~~~~pi~~s~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~ 79 (412)
T 2cb1_A 2 EYTTLAVLAGLPED-P-HGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGALEAVVLAS 79 (412)
T ss_dssp CHHHHHHHTTCCCC-T-TCCSSCCCCCCSBCCCSSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred CccceeeecCCCcC-C-CCCcCCCccccceeecCChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECC
Confidence 46899999998775 2 257889998887777643211 023577998888999999999999999988888888
Q ss_pred HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 83 GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 83 G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
|++++ .++..++++||+|+++.++|++++..+...++..|++++.++.+ ++++++.+++++++|++++|+||||.++|
T Consensus 80 gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~~~~~v~~~~~~n~~G~~~~ 158 (412)
T 2cb1_A 80 GQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSAKTRAVFVETVANPALLVPD 158 (412)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhccCCeEEEEeCCCCCCccccc
Confidence 88888 77777789999999999999887666666678889999999875 99999999989999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcc-cccCCCCCcCcEEEEcccccccCCCCceEEEEEecC-h----------------
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTA-YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTND-D---------------- 223 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~-~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~-~---------------- 223 (393)
+++|.++|+++ |+++|+|++|+.+ ....+...++|+++.|+||+++ .+|.|+|+++..+ .
T Consensus 159 l~~i~~l~~~~-~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 236 (412)
T 2cb1_A 159 LEALATLAEEA-GVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWAS-GHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236 (412)
T ss_dssp HHHHHHHHHHH-TCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred HHHHHHHHHHc-CCEEEEECCCccccccCCccccCCeEEEECCccccc-CCCCcEEEEEEeccccccccccccccccccc
Confidence 99999999999 9999999999987 4445555689999999999994 6777888877653 2
Q ss_pred ----------HHHHHHHHHH-HhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcc
Q psy12791 224 ----------SLQARLKFLQ-NSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPN 292 (393)
Q Consensus 224 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~ 292 (393)
++.+.++... ...+....+..+++....++.+..++++..++.+.+.++|.+++.+..+..|+....+.
T Consensus 237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~ 316 (412)
T 2cb1_A 237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA 316 (412)
T ss_dssp ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence 3445554433 33455567888888888888888888888889999999999999988888899888889
Q ss_pred hHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 293 HELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
+.++.+.+++.+++++|.+ ++.+....+++++++.. +.++|+.+++..++....+..++.+...++|..++.||+|+|
T Consensus 317 ~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g 394 (412)
T 2cb1_A 317 HRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVG 394 (412)
T ss_dssp HHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEec
Confidence 9999999888899999999 78889999999999888 999999999988877777777888888889998999999999
Q ss_pred CCChHHHHHHHHHHHHH
Q psy12791 373 VEGYTDLIADLDQALRK 389 (393)
Q Consensus 373 ~~~~~~~i~~l~~al~~ 389 (393)
.++++++++++.++|++
T Consensus 395 ~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 395 LEDPLDLLALFEEALEA 411 (412)
T ss_dssp SSCHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999999975
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=343.18 Aligned_cols=377 Identities=39% Similarity=0.692 Sum_probs=309.9
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHH
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVT 88 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~ 88 (393)
++++.++|.|...+ .|....+|+.....+....... ...+.|++++++...++++.+++++|.++.+++++|++++.
T Consensus 86 ~~~~~~i~l~~g~~--~~~~~~~~i~~a~~~~~~~~~~-~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~ 162 (464)
T 1ibj_A 86 SVSTLLVNLDNKFD--PFDAMSTPLYQTATFKQPSAIE-NGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALS 162 (464)
T ss_dssp CHHHHHTCCCCSSC--TTCCSSCCCCCCSBCCCSSSSC-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred CcCCeEEECCCCCC--CCCCCCccHHhhhhhhhhcccc-cCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHH
Confidence 46677777766421 1335566666655544222111 23577888899999999999999999988999999988884
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
++..++++||+|++++|+|+++...+...++..|++++.++.+|++++++++.+++++|++++|+||||.++|+++|.++
T Consensus 163 ~~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~l 242 (464)
T 1ibj_A 163 AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEM 242 (464)
T ss_dssp HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHH
Confidence 44457899999999999999765545556788899999999999999999999899999999999999999999999999
Q ss_pred HHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
|+++ |+++|+||+|..+....+...++|+++.|+||+++|++|+|+||++++++++.+.++......+...++..++++
T Consensus 243 a~~~-gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~ 321 (464)
T 1ibj_A 243 AHAQ-GALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC 321 (464)
T ss_dssp HHTT-TCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred HHHc-CCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999 999999999997655455567899999999999987889999999998668888887776666777788888888
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
.+.++.+..++++..++...+.+++++++.+..+.++++.+.+.+.++.....+++++++|.+. +.+..+.+++.+...
T Consensus 322 ~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~L~~~ 400 (464)
T 1ibj_A 322 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKHLVETTKYF 400 (464)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHHHHHHHCSSS
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-CHHHHHHHHHhcCcc
Confidence 8888888888888888999999999998888889999998887777777666677899999994 555567799999888
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++.++.|+.+++.+.|..+.+...+.+.....|..+++||+|++.++.++.+++|.++|+++
T Consensus 401 gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 401 SIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTF 462 (464)
T ss_dssp EECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSC
T ss_pred eEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999988887666665555555556777899999999999999999999998754
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=302.50 Aligned_cols=325 Identities=42% Similarity=0.650 Sum_probs=271.2
Q ss_pred HHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcC
Q psy12791 63 NLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK 141 (393)
Q Consensus 63 ~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~ 141 (393)
++|+++|+++|.++++++++|++++ .++.+++++||+|+++.|+|+++...+...++..|++++.++..|++++++.++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 6899999999999999999998778 667777899999999999999765544444566899999999889999999999
Q ss_pred CCCcEEEEecCCCCcccccCHHHHHHHHHh-CCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCce-EEEEE
Q psy12791 142 PNTKMVWIENPTNPLMTVFDVKAISAVVKQ-HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVV-MGATV 219 (393)
Q Consensus 142 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~-~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r-~G~~~ 219 (393)
+++++|++++|+||||.++|+++|.++|++ + |+++|+|++|+.+....+...++|+++.|+||++ |.+|.| +||++
T Consensus 82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~-~~~~~r~~G~~~ 159 (331)
T 1pff_A 82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQK-DILVIVDNTFASPILTNPLDLGVDIVVHSATKYI-NGHTDVVAGLVC 159 (331)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS-SCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT-SSSSSCCCEEEE
T ss_pred CCCeEEEEECCCCCcCcccCHHHHHHHHhhhc-CCEEEEECCCcccccCChhhcCCcEEEEECcccc-CCCCCceEEEEE
Confidence 889999999999999999999999999999 9 9999999999987655555678999999999999 578888 89999
Q ss_pred ecChHHHHHHHHHHHh-cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhh
Q psy12791 220 TNDDSLQARLKFLQNS-MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298 (393)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~ 298 (393)
++++++.+.++..... ++...++..++.+...++.+..++++..++...+.+++++++.+..+.++.+.+.+...+...
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~ 239 (331)
T 1pff_A 160 SRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKK 239 (331)
T ss_dssp ECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHH
T ss_pred eCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHh
Confidence 9833888877665554 455677777776666666666778888889999999999888877788888887777777766
Q ss_pred hcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH
Q psy12791 299 QWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~ 378 (393)
..++.++++.|.+. +.+....+++..++...+.++|+.+|+...+....+...+.+....+|..++++|+|++.+++++
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~ 318 (331)
T 1pff_A 240 QMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQD 318 (331)
T ss_dssp HCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred hCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHH
Confidence 65667889999995 67778888887776666788999888887766666666666666777887899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy12791 379 LIADLDQALRKA 390 (393)
Q Consensus 379 ~i~~l~~al~~~ 390 (393)
+++.+.++|+++
T Consensus 319 ~i~~l~~~l~~~ 330 (331)
T 1pff_A 319 IIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999999764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=273.13 Aligned_cols=303 Identities=16% Similarity=0.184 Sum_probs=222.7
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.+++| ++|+||+++++.+ ++ . ...+|+++...++|+++|++++.+ ++|++++|+++ + .++.+++++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v--a~----~---~~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g 99 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL--TQ----Q---TLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPG 99 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC--CC----C---CTTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTT
T ss_pred CceEEeeCCCCCCCCCHhH--hh----h---hhccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCC
Confidence 46778 9999999988776 21 1 234556667889999999999986 78999999776 6 6677778899
Q ss_pred -CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHh
Q psy12791 98 -DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171 (393)
Q Consensus 98 -d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 171 (393)
|+|+++.|+|++ +...++..|.+++.++.+ |++++++.++ ++++|++++||||||.++|.+++.++++.
T Consensus 100 ~d~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~ 174 (356)
T 1fg7_A 100 KDAILYCPPTYGM----YSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLEL 174 (356)
T ss_dssp TCEEEECSSSCTH----HHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCCChHH----HHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 999999999985 566677789999999874 7899999888 89999999999999999996665555443
Q ss_pred --CCCcEEEEeCccCcccccCC-C----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 172 --HPDILLVLDNTFLTAYYQKS-L----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 172 --~~~~~livDea~~~~~~~~~-~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
+ |+++|+||+|..+....+ . ..+++++++|+||++ |++|+|+||++++ +++++.++.....+ ..++..
T Consensus 175 ~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~~~--~~~~~~ 249 (356)
T 1fg7_A 175 TRG-KAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLAN-EEVINLLMKVIAPY--PLSTPV 249 (356)
T ss_dssp HTT-TCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEEC-HHHHHHHHHHSCSS--CSCHHH
T ss_pred CCC-CCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeC-HHHHHHHHHhcCCC--CCCHHH
Confidence 8 999999999997652111 1 135789999999999 6999999999996 88888887655443 455666
Q ss_pred HHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 245 CWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 245 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
+..+...++. +...+++..++++.+.+.|++++.+.. ..|. .+.++++.++ + ..
T Consensus 250 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~----------------~~~~~~~~~~-~---~~ 308 (356)
T 1fg7_A 250 ADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ-VFDS----------------ETNYILARFK-A---SS 308 (356)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-ECCC----------------SSSEEEEEET-T---HH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-ECCC----------------CCeEEEEECC-C---HH
Confidence 6666666654 344555666777888888887765322 2232 2567898884 3 33
Q ss_pred HHHHhcCcccccccc-CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 320 IFLESLLIFRCAESL-GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~-g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.+.|...++.+.. |..+ |. ++++|+|++ ++++++.+.++|+++
T Consensus 309 ~l~~~L~~~gI~v~~~g~~~----------------------~~-~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 309 AVFKSLWDQGIILRDQNKQP----------------------SL-SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHHHHHTTEECEECTTST----------------------TC-TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCEEEEECCCCC----------------------CC-CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 455555444555554 3321 11 469999998 467788888888754
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=269.98 Aligned_cols=311 Identities=16% Similarity=0.229 Sum_probs=230.1
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~~~g 97 (393)
.+++| +++.||+.+++.+.+++.+.+.. +..|+++...++|+++|++++.+ +.+++++|++ ++ .++..++++|
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~g 108 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVE---TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTT 108 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSC---CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTT
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHH---hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCC
Confidence 46788 89999999888888776655332 44456778899999999999975 6677766665 57 6677788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|+|+++.|+|.+ +...++..|++++.++.+ |++++++.+++++++|++++|+||||.++|.+++.++++.+
T Consensus 109 d~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 184 (363)
T 3ffh_A 109 TNTVMATPTFVQ----YRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRV 184 (363)
T ss_dssp CEEEEEESSCHH----HHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTS
T ss_pred CEEEEcCCChHH----HHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 999999999985 666677889999999887 89999999998999999999999999999999999999976
Q ss_pred C-CcEEEEeCccCcccccC---C----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHH
Q psy12791 173 P-DILLVLDNTFLTAYYQK---S----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFD 244 (393)
Q Consensus 173 ~-~~~livDea~~~~~~~~---~----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
+ |+++|+||+|+.+.... . ...+.++++.|+||++ |++|+|+||++++ +++.+.++.... ....++..
T Consensus 185 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~ 260 (363)
T 3ffh_A 185 PSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIAD-KEIIRQLNIVRP--PFNTTSIG 260 (363)
T ss_dssp CTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEEC-HHHHHHHHHTCC--SCCCBHHH
T ss_pred CCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecC-HHHHHHHHHhCC--CCCCCHHH
Confidence 3 89999999999654311 1 1134569999999999 7999999999996 888888765544 23455665
Q ss_pred HHHHHhccC---CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 245 CWLVTRGLK---TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 245 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
+..+...++ .+...+++..++++.+.+.|++++++. + .+. .+.++++.++.+ ...+
T Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~----------------~~~~~~~~~~~~---~~~~ 319 (363)
T 3ffh_A 261 QKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVK-L-YPA----------------NGNFVLIDLGIE---AGTI 319 (363)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCE-E-CCC----------------CSSEEEEECSSC---HHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCce-E-CCC----------------CCeEEEEECCCC---HHHH
Confidence 555554443 244556666777888888888765543 2 222 256788888533 3344
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.+...++.+..|..+. . ++++|+|++ ++++++.+.++|+++
T Consensus 320 ~~~l~~~gi~v~~g~~~~----------------------~-~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 320 FSYLEKNGYITRSGAALG----------------------F-PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHTTEECEETTTTT----------------------C-TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEEeCccCC----------------------C-CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 444444466665554321 1 589999998 777888888888764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=271.66 Aligned_cols=310 Identities=14% Similarity=0.160 Sum_probs=231.9
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.+++| +++.||+.+++.+.+++.+.+. .+..|+++...++|+++|+++|.+ +.+++++|+++ + .++..++++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~---~~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~g 106 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNAN---KAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSK 106 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGG---GTTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTT
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHH---hhccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCC
Confidence 46778 8899999888887776654422 244555555589999999999975 67777776664 7 6677788999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-----CCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHH--
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-----RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK-- 170 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-----~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~-- 170 (393)
|+|+++.|+|.+ +...++..|++++.++. .|++++++.+++++++|++++|+||||.++|.+++.++++
T Consensus 107 d~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 182 (365)
T 3get_A 107 NAFLQAGVTFAM----YEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGV 182 (365)
T ss_dssp CEEEECSSCCTH----HHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS
T ss_pred CEEEEeCCChHH----HHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC
Confidence 999999999985 56667788999999997 3678999999888999999999999999999999988888
Q ss_pred hCCCcEEEEeCccCcccc--c--CCCC-------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC
Q psy12791 171 QHPDILLVLDNTFLTAYY--Q--KSLP-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239 (393)
Q Consensus 171 ~~~~~~livDea~~~~~~--~--~~~~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
++ |+++|+||+|+.+.+ . .+.. .+.+++++|+||++ |++|+|+||++++ +++.+.++.....+ .
T Consensus 183 ~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~--~ 257 (365)
T 3get_A 183 NE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIAN-ANIISAFYKLRAPF--N 257 (365)
T ss_dssp CT-TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEEC-HHHHHHHHHHSCTT--C
T ss_pred CC-CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcC-HHHHHHHHHhcCCC--C
Confidence 67 999999999996652 1 1111 25679999999999 6999999999996 88988887655543 3
Q ss_pred CCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 240 PSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
.++..+..+...++. +...+++..++++.+.+.|+++ ++. + .+. .+.++++.+++.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~~----------------~~~~~~~~~~~~-- 316 (365)
T 3get_A 258 VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIK-I-IDS----------------YTNFITYFFDEK-- 316 (365)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCC----------------SSSEEEEECSSS--
T ss_pred cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE-E-CCC----------------CCeEEEEECCCC--
Confidence 556665555555544 4455666777788888888876 332 2 222 256788888542
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+.+.|...++.+..|..+ + ++++|+|++ ++++++.+.++|+++.
T Consensus 317 ~~~~~~~~l~~~gi~v~~g~~~----------------------~--~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 NSTDLSEKLLKKGIIIRNLKSY----------------------G--LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CHHHHHHHHHTTTEECEECGGG----------------------T--CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEECccC----------------------C--CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 3445555555456666655432 1 479999998 6777888888887754
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=265.61 Aligned_cols=312 Identities=14% Similarity=0.137 Sum_probs=232.1
Q ss_pred CCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhc
Q psy12791 19 SEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLL 94 (393)
Q Consensus 19 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~ 94 (393)
....+++| +++.||+.+++.+.+++.+.+. ...+|+++...++|+++|++++.+ +.+++++|+++ + .++..++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~---~~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~ 89 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAVV---KANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA 89 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTGG---GTTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHHh---hCcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh
Confidence 34457778 8899999888888877655433 244556788899999999999975 67777777665 7 6677778
Q ss_pred CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcC--CCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIK--PNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~--~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
++||+|+++.|+|.+ +...++..|++++.++.+ |++++++.++ +++++|++++|+||||.++|.+++.+
T Consensus 90 ~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 165 (354)
T 3ly1_A 90 SLEAQLVIPELTYGD----GEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEP 165 (354)
T ss_dssp CTTCEEEEESSSCTH----HHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCCeEEECCCCchH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 999999999999985 566678889999999987 8999999998 78999999999999999999888888
Q ss_pred HHHh--CCCcEEEEeCccCcccccCC----C----CC-cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 168 VVKQ--HPDILLVLDNTFLTAYYQKS----L----PW-GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 168 l~~~--~~~~~livDea~~~~~~~~~----~----~~-~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
+++. + |+++|+||+|+.+..... . .. +.+++++|+||++ |++|+|+||++++ +++.+.++.....
T Consensus 166 l~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~~- 241 (354)
T 3ly1_A 166 WIASKPA-NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAH-PTVIALMGRYVAG- 241 (354)
T ss_dssp HHHTCCT-TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECC-HHHHHHHGGGTTC-
T ss_pred HHHhCCC-CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecC-HHHHHHHHHhcCC-
Confidence 8887 8 999999999997654321 1 12 5679999999999 7999999999996 8888887655443
Q ss_pred CCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 237 GVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
...++..+..+...++. +...+++..++++.+.+.|+++ ++. + .+. .+.++++.+++
T Consensus 242 -~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~-~~~----------------~~~~~~~~~~~ 301 (354)
T 3ly1_A 242 -EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLP-Y-LPS----------------EGNFVFHQLVV 301 (354)
T ss_dssp -SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCC----------------CSSEEEEECSS
T ss_pred -CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCC----------------CceEEEEECCC
Confidence 35566666666666655 4445666677777888888764 222 1 111 25678888853
Q ss_pred CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 314 GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+. ..+.+.|...++.+. |..+ ..++++|+|++ ++++++.+.++|+++.
T Consensus 302 ~~---~~~~~~l~~~gi~v~-g~~~-----------------------~~~~~iRis~~---~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 302 PL---KDYQTHMADAGVLIG-RAFP-----------------------PADNWCRISLG---TPQEMQWVADTMREFR 349 (354)
T ss_dssp CH---HHHHHHHHHTTEECC-CCCT-----------------------TCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHCCEEEe-ecCC-----------------------CCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 33 334444433455555 3321 02689999987 5667788888877654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=260.56 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=223.9
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-HHHHHHhcCCC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-VTAVTHLLSAG 97 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l~~~~~~~~~g 97 (393)
+.+.++ ++|+||+++++.+.+++.+... .+.+|++++..++|+++|++++.+ ++|++++|+++ +.++...+ +|
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~---~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-~g 90 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAA---RINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-SS 90 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGG---GTTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS-TT
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhh---hhccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc-CC
Confidence 446777 8999999999888776654422 345567889999999999999987 68999999886 64444444 99
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
|+|++++|+|.+ +...++..|++++.++.+ |++++++. .+++++++++|+||||.++|.+++.++|+++
T Consensus 91 d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~ 164 (337)
T 3p1t_A 91 MRFVTAWPGFDG----YRARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRA 164 (337)
T ss_dssp SEEEEESSSCSH----HHHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHC
T ss_pred CeEEEeCCCcHH----HHHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 999999999985 667788899999999865 78888876 4689999999999999999999999999999
Q ss_pred CCcEEEEeCccCcccccCC--CC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12791 173 PDILLVLDNTFLTAYYQKS--LP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~--~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
+. +|+||+|..+..... .. .+.+++++|+||++ |++|+|+||++++ +++++.++.... ....+...+..+.
T Consensus 165 -~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~a~~ 238 (337)
T 3p1t_A 165 -GK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGP-SELIAAMKRKQW--FCNVGTLDLHALE 238 (337)
T ss_dssp -SE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECC-HHHHHHHHTTSC--TTCSCHHHHHHHH
T ss_pred -Cc-EEEECCChhhccccccccccCCCEEEEeeCchhc-cCcchheEEEEeC-HHHHHHHHhhcC--CCCCCHHHHHHHH
Confidence 86 566999987543322 12 35689999999999 7999999999997 888887765432 2334455554444
Q ss_pred hccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 250 RGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 250 ~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
..++. +..++++..++++.+.+.|+++ ++. + .+. .++++++... +.+... +.+.
T Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~~~~~~~~~~-~~~~~~---~~l~ 295 (337)
T 3p1t_A 239 AALDNDRAREAHIAKTLAQRRRVADALRGL-GYR-V-ASS----------------EANFVLVENA-AGERTL---RFLR 295 (337)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCC----------------SSSEEEEECT-TTHHHH---HHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCE-E-CCC----------------CCeEEEEEcC-CHHHHH---HHHH
Confidence 44443 3445666667777888888765 322 1 111 2567888774 333333 3333
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++.+..|..+. .++++|+|++ ++++++.+.++|+++.
T Consensus 296 ~~gi~v~~g~~~~-----------------------~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 296 ERGIQVKDAGQFG-----------------------LHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HTTEECEEGGGGT-----------------------CCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HCCeEEEECccCC-----------------------CCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 3456665554321 1479999998 5778889999988764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=265.69 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=229.2
Q ss_pred CCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH
Q psy12791 6 QDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG 83 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G 83 (393)
|+..+...+...|....+++| +++.+|+++++.+.+++.+.+.. ..+|+++...++|+++|++++.+ +.+++++|
T Consensus 8 ~g~~~~~~~~~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g 84 (364)
T 1lc5_A 8 HGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDC---IERYPDADYFHLHQALARHHQVPASWILAGNG 84 (364)
T ss_dssp SSCCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGG---GGSCCCTTCHHHHHHHHHHHTSCGGGEEEESS
T ss_pred CCccHHHHHHhcCCCccceEEeccccCCCCCCHHHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHCcCHHHEEECCC
Confidence 444444433344555556788 88888888777776655444322 33455667899999999999986 67888887
Q ss_pred HHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCC------HHHHHhhcCCCCcEEEEecCCCC
Q psy12791 84 LGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNP 155 (393)
Q Consensus 84 ~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d------~~~l~~~l~~~~~~v~l~~p~np 155 (393)
+++ + .++..+ +||+|+++.|+|++ +...++..|.+++.++.+. ++++.+.+.+++++|++++|+||
T Consensus 85 ~~~al~~~~~~~--~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~np 158 (364)
T 1lc5_A 85 ETESIFTVASGL--KPRRAMIVTPGFAE----YGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 158 (364)
T ss_dssp HHHHHHHHHHHH--CCSEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTT
T ss_pred HHHHHHHHHHHc--CCCeEEEeCCCcHH----HHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCC
Confidence 665 6 444445 78999999999985 5666778899999988752 35455666677999999999999
Q ss_pred cccccC---HHHHHHHHHhCCCcEEEEeCccCccccc--CCC----CCcCcEEEEcccccccCCCCceEEEEE-ecChHH
Q psy12791 156 LMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ--KSL----PWGVDIVLYSLTKYMNGHSDVVMGATV-TNDDSL 225 (393)
Q Consensus 156 tG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~--~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~-~~~~~~ 225 (393)
||.++| +++|.++|+++ |+++|+||+|+.+... ... ..+++++++|+||++ |++|+|+||++ ++ +++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~ 235 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSL-NINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSD-DAA 235 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCC-HHH
T ss_pred CCCCCCHHHHHHHHHHhhhc-CcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECC-HHH
Confidence 999999 88999999999 9999999999976531 111 146789999999999 68999999999 76 888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 226 QARLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
++.++.... ....++..+..+...++. +...+++..++++.+.+.|+++|++. + .+.
T Consensus 236 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~---------------- 295 (364)
T 1lc5_A 236 MARMRRQQM--PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT-V-YPG---------------- 295 (364)
T ss_dssp HHHHHHHSC--TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCC----------------
T ss_pred HHHHHHhCC--CCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-CCC----------------
Confidence 888766543 234566676666666665 33455556677788888888776653 2 222
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
.+.++++.++++ ...+.+.+...++.+..|..+.. ..++++|+|++. +++++.
T Consensus 296 ~g~~~~~~~~~~---~~~l~~~l~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~---~~~~~~ 348 (364)
T 1lc5_A 296 RANYLLLRCERE---DIDLQRRLLTQRILIRSCANYPG---------------------LDSRYYRVAIRS---AAQNER 348 (364)
T ss_dssp SSSEEEEEESCT---TCCHHHHHHTTTEECEECTTSTT---------------------CCTTEEEEECCC---HHHHHH
T ss_pred CCeEEEEECCCc---HHHHHHHHHHCCcEEeeCcccCC---------------------CCCCEEEEEeCC---HHHHHH
Confidence 256788888532 22344444444666665543320 125899999873 455666
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
+.++|+++
T Consensus 349 l~~~l~~~ 356 (364)
T 1lc5_A 349 LLAALRNV 356 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=262.87 Aligned_cols=314 Identities=18% Similarity=0.222 Sum_probs=226.7
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-HHHHHHhcCCC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-VTAVTHLLSAG 97 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l~~~~~~~~~g 97 (393)
..+++| +++.||+.+++.+.+++.+.+. .+.+|+++...++|+++|++++.+ +.+++++|+++ +.++...+
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~---~~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--- 98 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIK---NLGVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--- 98 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHH---GGGSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC---
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHH---HhcCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc---
Confidence 356788 8899999888777766654322 245567788899999999999975 67777777665 64444444
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHH
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVV 169 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~ 169 (393)
|+|+++.|+|.+ +...++..|++++.++.+ +++++++.+++ +++|++++|+||||.++| +++|.++|
T Consensus 99 d~vi~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~ 173 (361)
T 3ftb_A 99 EKILIIVPSYAE----YEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLA 173 (361)
T ss_dssp SEEEEEESCCTH----HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHH
T ss_pred CcEEEecCChHH----HHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 899999999985 566677889999999865 57899999988 999999999999999998 56677778
Q ss_pred HhCCCcEEEEeCccCccccc---CCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCH
Q psy12791 170 KQHPDILLVLDNTFLTAYYQ---KSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~---~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393)
+++ |+++|+||+|+.+... ... ..+.+++++|+||.+ |++|+|+||++..++++.+.++..... ...++
T Consensus 174 ~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~~~~~~~--~~~~~ 249 (361)
T 3ftb_A 174 EEK-KKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKIKAKQNP--WNINC 249 (361)
T ss_dssp HHH-TCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHHHTTSCT--TCSCH
T ss_pred hhc-CCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHHHhhCCC--CCCCH
Confidence 899 9999999999876542 111 124568999999999 699999999994448888887654442 34566
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 243 FDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
..+..+...++. +...+++..++.+.+.+.|++++++..+..+. ++++++.+++ ....
T Consensus 250 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~--~~~~ 310 (361)
T 3ftb_A 250 FAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPH-----------------ANFVLCRLEN--ISGE 310 (361)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCS-----------------SSEEEEEESS--SCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCC-----------------CeEEEEEcCC--CCHH
Confidence 777666666665 33455666777888889998887764232222 5788888853 2334
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.+.+.+...++.+..|..+. +..++++|+|++ ++++++.+.++|+++.+
T Consensus 311 ~l~~~l~~~gi~v~~g~~~~---------------------~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 311 KLYDSLLKEDIVIRRCCNFI---------------------GLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp HHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEeeCccCC---------------------CCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 45555544466666655432 112689999997 55566777777776643
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=266.33 Aligned_cols=315 Identities=16% Similarity=0.183 Sum_probs=230.2
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC-C-cEEEeccHHHH-H-HHHHHhcC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA-K-HGLCYSSGLGA-V-TAVTHLLS 95 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~-~-~~i~~~~G~~a-l-~~~~~~~~ 95 (393)
+.+.+| +++.||+.+++.+.+++.+.+.. ..+.+|+++...++|+++|+++|. + +.+++++|+++ + .++..+++
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~ 107 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELAARLGE-VALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAAR 107 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHHHHHHH-HHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCC
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHHHHhhh-hhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcC
Confidence 456778 88999998887777665443211 134556677889999999999998 4 68888888775 7 66777889
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCH---HHHH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDV---KAIS 166 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~---~~l~ 166 (393)
+||+|+++.|+|.+ +...++..|++++.++.+ |++++++.+++ ++++|++++||||||.+++. ++|.
T Consensus 108 ~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~ 183 (367)
T 3euc_A 108 PGAKVMAPVPGFVM----YAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIV 183 (367)
T ss_dssp TTCEEEEEESCSCC----SCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCEEEEcCCCHHH----HHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 99999999999986 455567889999999865 89999999987 89999999999999999974 4555
Q ss_pred HHHHhCC-CcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 167 AVVKQHP-DILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 167 ~l~~~~~-~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
++|++++ |+++|+||+|+.+...... ..+.++++.|+||+ |++|+|+||++++ +++.+.++..... ...+
T Consensus 184 ~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~ 258 (367)
T 3euc_A 184 RAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL--GLAGIRLGYVAGD-PQWLEQLDKVRPP--YNVN 258 (367)
T ss_dssp HHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT--TSCSCCEEEEEEC-HHHHHHHGGGCCS--SCCC
T ss_pred HhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh--cccccCceeeeeC-HHHHHHHHHhCCC--CCCC
Confidence 5566652 6999999999975432211 23567999999999 4899999999997 8888877544332 2356
Q ss_pred HHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 242 PFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
+..+..+...++. +...+++..++++.+.+.|+++|++. + .+. .+.++++.++ + .
T Consensus 259 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~----------------~~~~~~~~~~-~---~ 316 (367)
T 3euc_A 259 VLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-FPS----------------AANFLLARVP-D---A 316 (367)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-CCC----------------SSSEEEEECS-C---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC----------------CCeEEEEECC-C---H
Confidence 6666655555554 34556667778888888998877654 2 222 2567888884 3 3
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+.+.+...++.+..|+.+.. ..++++|+|++ ++++++.+.++|+++.
T Consensus 317 ~~l~~~l~~~gi~v~~~~~~~~---------------------~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 317 AQTFDRLLARKVLIKNVSKMHP---------------------LLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp HHHHHHHHTTTEECEECGGGCG---------------------GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCeEEEECCccCC---------------------CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 3455555555666665544310 12689999987 7778889988888764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=266.47 Aligned_cols=316 Identities=16% Similarity=0.143 Sum_probs=215.1
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~ 90 (393)
.+.++ +.+.+++.+++.+.+++.+.+... ...|+. .+..++|+++|+++ |. +++|++|+|+++ + .++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~ 108 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQG--KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLF 108 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT--CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHH
Confidence 35667 777787776665554432221111 123333 45788999999987 32 367888888665 7 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
.+++++||+|+++.|+|++ +...++..|++++.++.+ |++++++++.+++++|++++||||||.+++
T Consensus 109 ~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~ 184 (385)
T 1b5p_A 109 QAILDPGDEVIVLSPYWVS----YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184 (385)
T ss_dssp HHHCCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred HHhcCCCCEEEEcCCCchh----HHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHH
Confidence 7788999999999999984 667778889999998873 688999999888999999999999999998
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC---C-CCC--cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK---S-LPW--GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~---~-~~~--~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+++|.++|+++ |++||+||+|+.+.+.. + ... +++++++||||.+ |++|+|+||++++ +++++.+.....
T Consensus 185 ~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~-~~~~~~l~~~~~ 261 (385)
T 1b5p_A 185 VLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGP-KEVIKAMASVSR 261 (385)
T ss_dssp HHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhc-CCcccceEEEEeC-HHHHHHHHHHHh
Confidence 88899999999 99999999999865421 1 112 5689999999999 6999999999997 888888877665
Q ss_pred hcCCCCCHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT-------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
......+...+..+...++. +...++++.++++.+.+.|+++ ++. +..|. .+.++
T Consensus 262 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~ 323 (385)
T 1b5p_A 262 QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK-AVRPS----------------GAFYV 323 (385)
T ss_dssp TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BCCCS----------------BTTEE
T ss_pred hccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------eeEEE
Confidence 54445555555544444422 3344556666777778888764 332 11111 12356
Q ss_pred EEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
++.++........+.+.+...++.+..|..+. . ++++|+|++ ++++.++...+.|
T Consensus 324 ~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~----------------------~-~~~iRis~~--~~~~~i~~~l~~l 378 (385)
T 1b5p_A 324 LMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA----------------------A-FGHVRLSYA--TSEENLRKALERF 378 (385)
T ss_dssp EEECTTTCSSHHHHHHHHHHTTEECEESGGGT----------------------C-TTEEEEECC--SCHHHHHHHHHHG
T ss_pred EEecCCCCCCHHHHHHHHHHCCeEEecccccC----------------------C-CCeEEEEec--CCHHHHHHHHHHH
Confidence 77774100123344444444466666654331 0 479999998 4555444444444
Q ss_pred HH
Q psy12791 388 RK 389 (393)
Q Consensus 388 ~~ 389 (393)
.+
T Consensus 379 ~~ 380 (385)
T 1b5p_A 379 AR 380 (385)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=261.62 Aligned_cols=315 Identities=15% Similarity=0.149 Sum_probs=225.2
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhcCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLLSA 96 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~~~ 96 (393)
.+++| +++.||+.+++.+.+++.+.+.. ...+..|+++...++|+++|+++|.+ +.+++++|++ ++ .++..++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~ 105 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAE 105 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCT
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCC
Confidence 35678 89999998888877765443222 12245566677799999999999975 5666666655 57 777788899
Q ss_pred CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCc
Q psy12791 97 GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175 (393)
Q Consensus 97 gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 175 (393)
||+|+++.|+|.+ +...++..|++++.++.++-..+++... .+++++++++|+||||.++|.+++.++|+++ |+
T Consensus 106 gd~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~-~~ 180 (360)
T 3hdo_A 106 GEEIGYVHPSYSY----YGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRC-AG 180 (360)
T ss_dssp TCEEEEESSSCTH----HHHHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHB-SS
T ss_pred CCEEEEcCCChHH----HHHHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHC-CC
Confidence 9999999999985 5566778899999998863212222222 1478999999999999999999999999999 99
Q ss_pred EEEEeCccCcccccCCCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 176 LLVLDNTFLTAYYQKSLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 176 ~livDea~~~~~~~~~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
++|+||+|+.+....... .+.+++++|+||++ |++|+|+||++++ +++.+.++..... ...++..+..+...
T Consensus 181 ~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~ 256 (360)
T 3hdo_A 181 MLVLDETYAEFAESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIAR-PEVIAALDKIRDH--YNLDRLAQAACVAA 256 (360)
T ss_dssp EEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECC-HHHHHHHHHHSCS--CCSCHHHHHHHHHH
T ss_pred EEEEECChHhhCCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeC-HHHHHHHHHhCCC--CCCCHHHHHHHHHH
Confidence 999999999753322211 35679999999999 6999999999996 8888888765543 34556665555444
Q ss_pred cCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 252 LKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 252 ~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
++. +...+++..++++.+.+.|+++ ++. + .+. .+.++++.+++ ...+.+.+.+...
T Consensus 257 l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~----------------~~~~~~~~~~~--~~~~~l~~~l~~~ 315 (360)
T 3hdo_A 257 LRDQAYLSECCRRIRETREWFTTELRSI-GYD-V-IPS----------------QGNYLFATPPD--RDGKRVYDGLYAR 315 (360)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCC----------------SSSEEEEECTT--CCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-cCC----------------CccEEEEECCC--CCHHHHHHHHHHC
Confidence 443 4455666777788888888876 332 2 121 25678888753 1233444444444
Q ss_pred ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 329 RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
++.+..++. + ..++++|+|++ ++++++.+.++|+++.+
T Consensus 316 gi~v~~~~~------~-----------------~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 316 KVLVRHFSD------P-----------------LLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TEECBCCCS------T-----------------TTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCC------C-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 555554332 0 11589999998 78888999999998764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=260.87 Aligned_cols=310 Identities=14% Similarity=0.191 Sum_probs=222.7
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCC
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAG 97 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~g 97 (393)
.+++| ++|.||+.+++.+.+++.+.+ ..+..|+++...++|+++|++++.+ +.+++++|+++ + .++..+. |
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~---~~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--g 89 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL---NCIRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--G 89 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG---GGGGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--T
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH---hHHhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--C
Confidence 56788 899999998888777665543 3455666666689999999999986 67888888775 6 5555555 9
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-CCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcE
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-RKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 176 (393)
|+|+++.|+|.+ +...++..|++++.++. ++.+.+.. +++++|++++|+||||.++|.+++.++++.++..+
T Consensus 90 d~Vi~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 162 (350)
T 3fkd_A 90 SRSLIAIPSFAE----YEDACRMYEHEVCFYPSNEDIGEADF---SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTT 162 (350)
T ss_dssp CEEEEEESCCHH----HHHHHHHTTCEEEEEETTSCGGGSCC---TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSE
T ss_pred CEEEEeCCCcHH----HHHHHHHcCCeEEEEecCCccccCcc---CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCE
Confidence 999999999985 56677889999999998 54333321 57999999999999999999999999999982379
Q ss_pred EEEeCccCcccccCCC------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 177 LVLDNTFLTAYYQKSL------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 177 livDea~~~~~~~~~~------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
+|+||+|+.+...... ..+.+++++|+||++ |++|+|+||++++ +++.+.++..... ...++..+..+..
T Consensus 163 li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 238 (350)
T 3fkd_A 163 FVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVAN-KDFMKRVAAFSTP--WAVNALAIEAAKF 238 (350)
T ss_dssp EEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECC-HHHHHHHHTTCCT--TCSCHHHHHHHHH
T ss_pred EEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeC-HHHHHHHHHhCCC--CCCCHHHHHHHHH
Confidence 9999999875543211 235679999999999 6999999999996 8888887654432 2345555444433
Q ss_pred cc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 251 GL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 251 ~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
.+ +.+..++++..++++.+.+.|+++|++. + .+. .+.++++.+++. ..+.+.+.|..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~----------------~~~~~~~~~~~~--~~~~l~~~L~~ 298 (350)
T 3fkd_A 239 ILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE-V-HPS----------------GTTFFLLRLKKG--TAAELKKYMLE 298 (350)
T ss_dssp HHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE-E-CCC----------------SSSEEEEEESSS--CHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-CCC----------------CCcEEEEECCCC--CHHHHHHHHHH
Confidence 32 2122334444477888899998877654 2 222 256788888542 44556666654
Q ss_pred -cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 328 -FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 328 -~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.++.+..|..+. +..++++|+|++ ++++++.+.++|+++.
T Consensus 299 ~~gi~v~~g~~f~---------------------~~~~~~iRis~~---~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 299 EYNMLIRDASNFR---------------------GLDESYVRITTQ---RPAQNQLFIKALETFL 339 (350)
T ss_dssp TTCEECEECTTST---------------------TCCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HCCEEEEeCccCC---------------------CCCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 577777665542 112689999997 5556677777777664
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=260.95 Aligned_cols=328 Identities=15% Similarity=0.151 Sum_probs=224.5
Q ss_pred eccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCC---------CCCccccCCCCc-hHHHHHHHHHHHhC--------CC
Q psy12791 15 VHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQP---------PQGFEYSRSNNP-TRRNLERCIASLEE--------AK 75 (393)
Q Consensus 15 ~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~---------~~~~~y~~~~~~-~~~~lr~~la~~~~--------~~ 75 (393)
.|..-.+..++| ++|+||+.++ .+.+.+.+.. .......+|+++ +..++|+++|++++ .+
T Consensus 29 ~~~~~~~~~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~ 107 (428)
T 1iay_A 29 FHPLKNPNGVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD 107 (428)
T ss_dssp CCSSSSTTSBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC
T ss_pred CCcccCCCceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Confidence 444444456778 8899999765 3332221110 011123556655 48899999999986 43
Q ss_pred -cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHH-hcccCCcEEEeeCCC-------CHHHHHhhcCC--
Q psy12791 76 -HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQ-VAPKIGLEVDFVDLR-------KIENLIKYIKP-- 142 (393)
Q Consensus 76 -~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~-~~~~~g~~v~~~~~~-------d~~~l~~~l~~-- 142 (393)
+.+++++|+++ + .++..++++||+|+++.|+|++ +.. ++...|++++.++.+ |++++++.+.+
T Consensus 108 ~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 183 (428)
T 1iay_A 108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPA----FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQ 183 (428)
T ss_dssp TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTT----HHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHH
T ss_pred hhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcc----hHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHH
Confidence 68888888776 7 6777788999999999999986 333 345789999999863 68888887752
Q ss_pred ----CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-CC-C-----Cc-------Cc--EE
Q psy12791 143 ----NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-SL-P-----WG-------VD--IV 199 (393)
Q Consensus 143 ----~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~~-~-----~~-------~d--i~ 199 (393)
++++|++++||||||.++| +++|.++|+++ |+++|+||+|..+.+.. .. . .. .| ++
T Consensus 184 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred hcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 6899999999999999999 88999999999 99999999999854321 11 1 11 45 89
Q ss_pred EEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH-------HHHHHHHHHHHHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL-------PCRLKEHERGSIEVAKF 272 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~ 272 (393)
+.|+||++ |++|+|+||++++++++++.++.....+ ..++..+..+...++.. ...++++.++.+.+.+.
T Consensus 263 ~~s~sK~~-g~~Glr~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (428)
T 1iay_A 263 VYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSFG--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNG 339 (428)
T ss_dssp EEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eecchhhc-CCCCceEEEEEeCCHHHHHHHHHHHhcc--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 6999999999996588888887654432 34556666666666552 23444555667777888
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----HHHHHHHHHhcCc-cccccccCCccccccCccc
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-----AEETRIFLESLLI-FRCAESLGGIESLADLPAE 346 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~ 346 (393)
|+++ ++. +..+. .+.++++.+++. ......+.+.+.. .++.+..|+.+..
T Consensus 340 L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~------ 395 (428)
T 1iay_A 340 LEVV-GIK-CLKNN----------------AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC------ 395 (428)
T ss_dssp HHHT-TCC-BCCCS----------------SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC------
T ss_pred HHhc-CCc-ccCCC----------------eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC------
Confidence 8765 332 11110 245788888421 1234456666543 3666655443211
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++++|++++ ..++++++.+.++|+++.
T Consensus 396 ---------------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 396 ---------------QEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp ---------------SSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 01579999999 467777788888777653
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=260.92 Aligned_cols=318 Identities=14% Similarity=0.093 Sum_probs=222.7
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CCC---c-EEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EAK---H-GLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~~---~-~i~~~~G~~a-l-~~ 89 (393)
.+++| +++.+++++++.+.+++.+.+... ....|++ ++..++|+++|+++ |.+ + .|++++|+++ + .+
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDP-TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHL 103 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCG-GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCC-CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence 35677 778888877666666554433221 2334555 47889999999988 864 4 7888888665 7 67
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-----CCHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-----RKIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-----~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+..++++||+|+++.|+|++ +...++..|.+++.++. .|++++++.+.+++++|++++|+||||.++|
T Consensus 104 ~~~l~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 179 (376)
T 2dou_A 104 LLALTEPEDLLLLPEVAYPS----YFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGY 179 (376)
T ss_dssp HHHHCCTTCEEEEESSCCHH----HHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHH
T ss_pred HHHhcCCCCEEEECCCCcHh----HHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHH
Confidence 77788899999999999985 55667778999999886 2677787777667899999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC-C---CC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK-S---LP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~-~---~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ |+++|+||+|+.+.+.. + .. .+.+++++|+||++ |++|+|+||++++ +++++.++...
T Consensus 180 l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~ 256 (376)
T 2dou_A 180 FEEALGLARKH-GLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGS-EEALARLERVK 256 (376)
T ss_dssp HHHHHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEEC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecC-HHHHHHHHHHH
Confidence 67888999999 99999999999865421 1 11 25679999999999 6899999999987 88999887766
Q ss_pred HhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
..+....++..+..+...++. +...++...++.+.+.+.|+++ +. +..+. .+.++++
T Consensus 257 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~----------------~~~~~~~ 317 (376)
T 2dou_A 257 GVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LS-LLPPR----------------ATMYLWG 317 (376)
T ss_dssp HHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SE-ECCCC----------------BSSEEEE
T ss_pred HhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cC-ccCCC----------------eeEEEEE
Confidence 655555566666655555554 3334555566777788888764 22 22121 1346888
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.++. ......+.+.+...++.+..|..+.. ..++++|+|++. ++++++.+.+.|++
T Consensus 318 ~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 318 RLPE-GVDDLEFGLRLVERGVALAPGRGFGP---------------------GGKGFVRIALVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp ECCT-TCCHHHHHHHHHHTTEECEEGGGGCG---------------------GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred ECCC-CCCHHHHHHHHHHCCEEEcCchhhCC---------------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 8852 11223455554433666655543321 015899999986 45666666666655
Q ss_pred h
Q psy12791 390 A 390 (393)
Q Consensus 390 ~ 390 (393)
+
T Consensus 374 ~ 374 (376)
T 2dou_A 374 A 374 (376)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=257.87 Aligned_cols=315 Identities=17% Similarity=0.202 Sum_probs=222.0
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC------CC-cEEEeccHHH-HH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE------AK-HGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~------~~-~~i~~~~G~~-al-~~~ 90 (393)
.+++| +++.+++++++.+.+++.+.+.. ...|+. ..+..++|+++|++++ .+ +.+++++|++ ++ .++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~ 106 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTD--SRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFAL 106 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC--TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCC--CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHH
Confidence 35667 67777776665555544332111 222331 2467889999999874 22 5666666655 57 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHH
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK 170 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~ 170 (393)
..++++||+|++++|+|++ +...++..|.+++.++ .|++++++.+++++++|++++|+||||.++|.+ |.++|+
T Consensus 107 ~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~ 180 (370)
T 2z61_A 107 SSIIDDGDEVLIQNPCYPC----YKNFIRFLGAKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAY 180 (370)
T ss_dssp HHHCCTTCEEEEESSCCTH----HHHHHHHTTCEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHH
T ss_pred HHhcCCCCEEEEeCCCchh----HHHHHHHcCCEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHH
Confidence 7788999999999999985 5566778899999998 689999999988899999999999999999999 999999
Q ss_pred hCCCcEEEEeCccCcccccC---C---C--CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCH
Q psy12791 171 QHPDILLVLDNTFLTAYYQK---S---L--PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242 (393)
Q Consensus 171 ~~~~~~livDea~~~~~~~~---~---~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393)
++ |+++|+||+|+.+.... + + ..++|+++.|+||++ |++|+|+||++++ +++++.++.....+....++
T Consensus 181 ~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (370)
T 2z61_A 181 EN-IPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISN-DEIIEAILKLQQNLFISAPT 257 (370)
T ss_dssp HH-CSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHTSSSCH
T ss_pred Hc-CCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEEC-HHHHHHHHHHHhhcccCCCH
Confidence 99 99999999999865421 1 1 136789999999999 6999999999998 78888887766655556677
Q ss_pred HHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH
Q psy12791 243 FDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE 317 (393)
Q Consensus 243 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
..+..+...++. +...+++..++.+.+.+.|+++ ++. +..+. .+.++++.+++ .
T Consensus 258 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~---~ 316 (370)
T 2z61_A 258 ISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWE-VNNPI----------------GAYYVFPNIGE---D 316 (370)
T ss_dssp HHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCB-CCCCC----------------BTTEECCBCSS---C
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----------------cceEEEEecCC---C
Confidence 777766666654 2234455566777778888765 332 11111 13456777742 2
Q ss_pred HHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 318 TRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 318 ~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+.+.+. ..++.+..|..+.. ..++++|+|++ +++++++.+.+.|.++.
T Consensus 317 ~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 317 GREFAYKLLKEKFVALTPGIGFGS---------------------KGKNYIRISYA--NSYENIKEGLERIKEFL 368 (370)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGCG---------------------GGSSBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 344555543 34566555543321 01579999999 56666777777776554
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=258.39 Aligned_cols=322 Identities=16% Similarity=0.169 Sum_probs=223.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHhC--CC-cEEEeccHHH-HH-HHHHHhc
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLEE--AK-HGLCYSSGLG-AV-TAVTHLL 94 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~~--~~-~~i~~~~G~~-al-~~~~~~~ 94 (393)
.+.++ +.+.+++.+++.+.+++.+.+. ..+.|+....+..+++++.+++++| .+ +.+++++|++ ++ .++..++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~ 111 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT 111 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC
Confidence 45567 7777888777777765543322 2355665555666777777777778 33 5666666655 57 6777788
Q ss_pred CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---------CHHHHHhhcCCCCcEEEEecCCCCcccccC---H
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---V 162 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~ 162 (393)
++||+|+++.|+|++ +...++..|++++.++.+ |++++++.+++ +++|++++|+||||.+++ +
T Consensus 112 ~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l 186 (391)
T 4dq6_A 112 KANDKIMIQEPVYSP----FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDEL 186 (391)
T ss_dssp CTTCEEEECSSCCTH----HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHH
T ss_pred CCCCEEEEcCCCCHH----HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHH
Confidence 999999999999995 556677889999999875 78999999988 999999999999999976 7
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccC----CC-CC-----cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQK----SL-PW-----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~----~~-~~-----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
++|.++|+++ |+++|+||+|+.+.... ++ .. +.++++.|+||++ |++|+|+||++++++++.+.++..
T Consensus 187 ~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~ 264 (391)
T 4dq6_A 187 KKLGDICLKH-NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF-NIAGLQSSYVVLPDEKDYKLLDDA 264 (391)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-cCcccceEEEEeCCHHHHHHHHHH
Confidence 7888889999 99999999999865421 11 11 3449999999999 699999999999866888888776
Q ss_pred HHhcCC-CCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 233 QNSMGV-VPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
...++. ..++..+..+...++. +...+++..++++.+.+.|++ +|++. +..+. .+.+
T Consensus 265 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----------------~~~~ 327 (391)
T 4dq6_A 265 FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLK-VRKPE----------------GTYL 327 (391)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCS----------------BSSE
T ss_pred HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-ecCCC----------------ccEE
Confidence 554333 4555554443333321 445566677778888888876 56654 22221 1234
Q ss_pred EEEEEcCCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 307 LSFYVNGGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+++.++........+.+.+... ++.+..|..+.. ..++++|+|++ +++++++.+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~--~~~~~i~~~l~ 384 (391)
T 4dq6_A 328 LWVDFSALGLSDEELESILVQKGKVALNQGNSFGI---------------------GGSGYQRINLA--CPRSMLEEALI 384 (391)
T ss_dssp EEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT---------------------TCTTEEEEECC--SCHHHHHHHHH
T ss_pred EEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC---------------------CCCCeEEEEEc--CCHHHHHHHHH
Confidence 5687752011334455555443 666665544321 12589999999 46666777766
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
+|.++
T Consensus 385 ~l~~~ 389 (391)
T 4dq6_A 385 RIKNA 389 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=261.03 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=222.1
Q ss_pred CCCCCC-CC-CCCCCccCCeeeeCCCCCCCCC--ccccCC--CCchHHHHHHHHHHHhCC---C-cEEEeccHHH-HH-H
Q psy12791 21 PDQWRS-QC-VIPPIILSTTFKQNTPGQPPQG--FEYSRS--NNPTRRNLERCIASLEEA---K-HGLCYSSGLG-AV-T 88 (393)
Q Consensus 21 ~~~~~~-~~-~~~p~~~~~~~~~~~~~~~~~~--~~y~~~--~~~~~~~lr~~la~~~~~---~-~~i~~~~G~~-al-~ 88 (393)
+.+++| ++ +.+|+.+++.+.+++.+.+... +.|... .....+++++.+++++|. + +.+++++|++ ++ .
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~ 117 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 117 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 345677 54 5667778877776654432211 123321 112344455556666676 2 5677777765 47 6
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-------C----CHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-------R----KIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-------~----d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
++..++++||+|+++.|+|.+ +...++..|.+++.++. + |++++++.+.+++++|++++|+||||
T Consensus 118 ~~~~l~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG 193 (407)
T 3nra_A 118 AVAATVARGDKVAIVQPDYFA----NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAG 193 (407)
T ss_dssp HHHTTCCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTC
T ss_pred HHHHhCCCCCEEEEcCCcccc----hHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCC
Confidence 677788999999999999985 56677888999998886 2 79999999988899999999999999
Q ss_pred cccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----C------CCCcCcEEEEcccccccCCCCceEEEEEecChH
Q psy12791 158 TVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS 224 (393)
Q Consensus 158 ~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~ 224 (393)
.++| +++|.++|+++ |+++|+||+|+.+.+.. + ...++++++.|+||++ |++|+|+||++++ ++
T Consensus 194 ~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~ 270 (407)
T 3nra_A 194 VVYSAEEIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGS-RA 270 (407)
T ss_dssp CCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEEC-HH
T ss_pred cccCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcC-HH
Confidence 9999 89999999999 99999999999754321 1 1134679999999999 6999999999997 88
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc
Q psy12791 225 LQARLKFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300 (393)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~ 300 (393)
+++.++.....+....++..+..+...++. +...+++..++++.+.+.|+.++++..+ .+.
T Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~-------------- 335 (407)
T 3nra_A 271 IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR-TPQ-------------- 335 (407)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCC-CCS--------------
T ss_pred HHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceec-cCC--------------
Confidence 999888776666666666666555555532 5556777778888888888877654321 111
Q ss_pred CCCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 301 SGTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
.+.++++.++........+.+.|. ..++.+..|..+.. ..++++|+|++. ++++
T Consensus 336 --~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~--~~~~ 390 (407)
T 3nra_A 336 --AGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP---------------------HTADSVRLNFSQ--DHEA 390 (407)
T ss_dssp --BSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCT---------------------TCTTBEEEECCS--CHHH
T ss_pred --eeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEeCC--CHHH
Confidence 135667776421122334444442 23555555544320 126899999985 5555
Q ss_pred HHHHHHHHHHh
Q psy12791 380 IADLDQALRKA 390 (393)
Q Consensus 380 i~~l~~al~~~ 390 (393)
++.+.++|.++
T Consensus 391 i~~~~~~l~~~ 401 (407)
T 3nra_A 391 AVAAARRIVTL 401 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555543
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=255.00 Aligned_cols=314 Identities=17% Similarity=0.141 Sum_probs=218.3
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhcCCC
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLLSAG 97 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~~~g 97 (393)
+.+| +.+.+++.+++.+.+++.+.+.... .|+++ ...++|+++|++++.+ +.+++++|++ ++ .++..++++|
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~g 102 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPG 102 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTSC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTT
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCC
Confidence 4567 7777777766666655544322222 34333 6789999999999976 5566666655 57 6677778999
Q ss_pred CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHH
Q psy12791 98 DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAIS 166 (393)
Q Consensus 98 d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~ 166 (393)
|+|++++|+|++ +...++..|++++.++.+ |++++++.+.+++++|++++|+||||.++| +++|.
T Consensus 103 d~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~ 178 (381)
T 1v2d_A 103 DEVVVLEPFFDV----YLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIA 178 (381)
T ss_dssp CEEEEEESCCTT----HHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CEEEEcCCCchh----HHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHH
Confidence 999999999986 455677889999988764 789999999888999999999999999998 88999
Q ss_pred HHHHhCCCcEEEEeCccCcccccC-CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQK-SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP 240 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~-~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
++|+++ |+++|+||+|+.+.+.. +. ..++++++.|+||++ |++|+|+||++++ +++++.++..........
T Consensus 179 ~~~~~~-~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~ 255 (381)
T 1v2d_A 179 RLARAH-DLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGP-KEFMPRLAGMRQWTSFSA 255 (381)
T ss_dssp HHHHHT-TCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECC-TTTHHHHHHHHHHHTSSC
T ss_pred HHHHHc-CCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhc-CCcccceEEEEeC-HHHHHHHHHHHhhcccCC
Confidence 999999 99999999999765311 11 236899999999999 6899999999997 778888776555434444
Q ss_pred CHHHHHHHHhcc------CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 241 SPFDCWLVTRGL------KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 241 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
++..+..+...+ +.+...+++..++.+.+.+.|++. ++. +..+. .+.++++.+++.
T Consensus 256 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~ 317 (381)
T 1v2d_A 256 PTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR-VYVPE----------------GTYFLMAELPGW 317 (381)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCS----------------BSSEEEEECTTC
T ss_pred CcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ecCCC----------------cceEEEEecChH
Confidence 554443333222 224455666777788888888763 333 22221 135678888532
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+ +...+...++.+..|..+... ...++++|+|++. ++++++.+.+.|.++
T Consensus 318 -~----~~~~l~~~gi~v~~g~~~~~~-------------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 318 -D----AFRLVEEARVALIPASAFYLE-------------------DPPKDLFRFAFCK--TEEELHLALERLGRV 367 (381)
T ss_dssp -C----HHHHHHHTCEECEEGGGGCSS-------------------SCCTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred -h----HHHHHHhCCEEEecchHhCCC-------------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 2 333333335555544332210 0125799999987 566666666666544
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=256.04 Aligned_cols=285 Identities=15% Similarity=0.124 Sum_probs=213.1
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...++++.+|++++.++++++++|++++ .++..++++||.|+++.|+|++ +...++..|.+++.++..|++++
T Consensus 87 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~----~~~~~~~~g~~~~~~~~~d~~~l 162 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHAS----IIDGIRLCKAQRYRYKNNAMGDL 162 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHH----HHHHHHSCCSEEEEECTTCTTHH
T ss_pred chHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHH----HHHHHHHcCCceeEeCCCCHHHH
Confidence 456899999999999999999999999887 7777888999999999999985 56667889999999998888888
Q ss_pred HhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---------CCCcCcEEEE
Q psy12791 137 IKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LPWGVDIVLY 201 (393)
Q Consensus 137 ~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~~~~di~~~ 201 (393)
++.+.+ ++++|++++|+||||.++|+++|.++|+++ |+++|+||+|+.++.... ...+.|++++
T Consensus 163 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~ 241 (399)
T 3tqx_A 163 EAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKY-NALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG 241 (399)
T ss_dssp HHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHT-TCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred HHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence 888765 799999999999999999999999999999 999999999975432211 1125689999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~ 275 (393)
|+||+++|++ +||++++ +++++.+..... .+....++..+..+...++ .....+++..++.+.+.+.|++
T Consensus 242 s~sK~~~g~~---gG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 317 (399)
T 3tqx_A 242 TLGKALGGAS---GGYTSGH-KEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK 317 (399)
T ss_dssp ESSSSSCSSC---CEEEEEC-HHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhcccCc---eEEEEcC-HHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999995454 5999997 888888876422 2344556665544444433 3455666777778888888876
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
. ++. +. + ..++++++.++ +......+.+.+...++.+..+.....
T Consensus 318 ~-g~~-~~-~----------------~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~--------------- 362 (399)
T 3tqx_A 318 L-GFQ-LV-P----------------GNHPIIPVMLG-DAQLATNMADHLLQEGIYVVGFSYPVV--------------- 362 (399)
T ss_dssp H-TCC-BC-C----------------CSSSEEEEEEE-CHHHHHHHHHHHHHTTEECCEECTTTS---------------
T ss_pred c-CCC-cC-C----------------CCCCEEEEEeC-CHHHHHHHHHHHHHCCCEEeeeCCCCC---------------
Confidence 4 221 11 1 13678899885 455666677766555665543221100
Q ss_pred hHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 356 TRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...++++|++++...++++++.+.++|+++.
T Consensus 363 -----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 363 -----PMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp -----CTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -----CCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 0125799999998888888888888887653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=253.45 Aligned_cols=313 Identities=16% Similarity=0.194 Sum_probs=219.4
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC---CcEEEeccHHH-HH-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA---KHGLCYSSGLG-AV-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~---~~~i~~~~G~~-al-~~~~ 91 (393)
+++| +++.+++.+++.+.+++.+.+... ...|+. ++..++|+++|+++ |. ++.+++++|++ ++ .++.
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~ 119 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKG--EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFM 119 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTC--CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHH
Confidence 5667 677777766665555443322111 113333 46789999999987 64 25777777766 57 6677
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
.++++||+|++++|+|++ +...++..|.+++.++.+ |++++++.+++++++|++++|+||||.++|
T Consensus 120 ~l~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~ 195 (389)
T 1o4s_A 120 ALLDPGDEVIVFSPVWVS----YIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREF 195 (389)
T ss_dssp HHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HhCCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHH
Confidence 778999999999999986 455667789999988764 789999999888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC-C-----CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK-S-----LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~-~-----~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ |+++|+||+|+.+.... + +. .++|++++|+||++ |++|+|+||++++ +++++.+....
T Consensus 196 l~~l~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~-~~~~~~l~~~~ 272 (389)
T 1o4s_A 196 LEGLVRLAKKR-NFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISS-EKVATAVSKIQ 272 (389)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeC-HHHHHHHHHHh
Confidence 88999999999 99999999999865421 1 11 36789999999999 6999999999997 88888887766
Q ss_pred HhcCCCCCHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT-LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
.......++..+..+...++. +...+++..++.+.+.+.|+++ ++. +..+. .+.++++.++
T Consensus 273 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~ 334 (389)
T 1o4s_A 273 SHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GVK-FVEPE----------------GAFYLFFKVR 334 (389)
T ss_dssp HHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCS----------------BSSEEEEECS
T ss_pred hhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCe-eecCC----------------cceEEEEeCC
Confidence 554445566665555555543 4556677778888888888865 332 11111 1345777773
Q ss_pred CCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 313 GGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 313 ~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....+.+.+. ..++.+..|..+. .++++|+|++. ++++++.+.+.|.++
T Consensus 335 ---~~~~~l~~~l~~~~gi~v~~g~~f~-----------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~ 385 (389)
T 1o4s_A 335 ---GDDVKFCERLLEEKKVALVPGSAFL-----------------------KPGFVRLSFAT--SIERLTEALDRIEDF 385 (389)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHCCEEEeCchhcC-----------------------CCCeEEEEEeC--CHHHHHHHHHHHHHH
Confidence 12234444443 3455555443321 03699999984 555666666666554
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=255.94 Aligned_cols=318 Identities=15% Similarity=0.121 Sum_probs=217.4
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC------CC-cEEEeccHHH-HH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE------AK-HGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~------~~-~~i~~~~G~~-al-~~~ 90 (393)
.+++| +++.+|+.+++.+.+++.+.+.. ...|. +..+..++|+++|++++ .+ +.+++++|++ ++ .++
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~ 108 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYT--VALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAF 108 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC--CCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHH
Confidence 46778 88888887777666655433221 22232 22357889999999874 33 5666666655 57 777
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
..++++||+|+++.|+|.+ +...++..|++++.++.+ |++++++. ++++|++++|+||||.++|
T Consensus 109 ~~l~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~ 181 (391)
T 3h14_A 109 TALFDSGDRVGIGAPGYPS----YRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHA 181 (391)
T ss_dssp HHHCCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHH
T ss_pred HHhcCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHH
Confidence 7888999999999999985 556677889999999875 77888766 7899999999999999998
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC-CCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK-SLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
+++|.++|+++ |+++|+||+|+.+.+.. +.. .+.+++++|+||++ |++|+|+||++++ +++.+.+......
T Consensus 182 ~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~~ 258 (391)
T 3h14_A 182 AMGALIEAAQAQ-GASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYF-SMTGWRVGWMVVP-EDQVRVVERIAQN 258 (391)
T ss_dssp HHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECC-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhcc-CCccceeEEEEeC-HHHHHHHHHHHhh
Confidence 88899999999 99999999999765422 111 25679999999999 7999999999997 7888888777766
Q ss_pred cCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 236 MGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
+....++..+..+...++. +...+++..++++.+.+.|++++... +..+. .+.++++.++
T Consensus 259 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~----------------~~~~~~~~~~ 321 (391)
T 3h14_A 259 MFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTR-IAPPD----------------GAFYVYADVS 321 (391)
T ss_dssp TTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-BCCCC----------------BTTEEEEECT
T ss_pred hccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccCCC----------------eeEEEEEecC
Confidence 6666667666555444443 34455666677778888887653321 11111 1346777774
Q ss_pred CCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 313 GGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 313 ~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
........+.+.+. ..++.+..|..+... ..++++|+|++. ++++++.+.+.|.++
T Consensus 322 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~--------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 322 DLTDDSRAFAAEILEKAGVAVTPGLDFDPE--------------------RGAGTLRFSYAR--ATADIEEGLDRLEAF 378 (391)
T ss_dssp TTCSCHHHHHHHHHHHHCEECEEGGGTCTT--------------------TGGGEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHCCEEEcCchhhCCC--------------------CCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 21122334444432 235666665543210 125899999998 445556555555544
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=255.31 Aligned_cols=316 Identities=15% Similarity=0.138 Sum_probs=216.6
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHH-HH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~-al-~~~ 90 (393)
.+++| +.+.+++.+++.+.+++.+.+. ....| +.+ ..++|+++|+++ | .+ +.+++++|++ ++ .++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y---~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~ 106 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGY---TGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSS---BCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCC---CCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHH
Confidence 56778 7788888777766665543321 12233 334 788999999975 5 33 5677777765 57 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcC-CCCcEEEEecCCCCcccccC
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIK-PNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~ 161 (393)
.+++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+. +++++|++++|+||||.++|
T Consensus 107 ~~l~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 182 (399)
T 1c7n_A 107 REFTKPGDGVIIITPVYYP----FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWK 182 (399)
T ss_dssp HHHCCTTCEEEECSSCCTH----HHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCC
T ss_pred HHhcCCCCEEEEcCCCcHh----HHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcC
Confidence 7788899999999999995 556677889999998862 6899999987 67999999999999999999
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC---C---CcCcEEEEcccccccCCCCceEEEEEecChHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL---P---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR 228 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~---~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~ 228 (393)
+++|.++|+++ |+++|+||+|+.+.+.. ++ . .+.++++.|+||++ |++|+|+||++++++++++.
T Consensus 183 ~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~ 260 (399)
T 1c7n_A 183 KDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRER 260 (399)
T ss_dssp HHHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCHHHHHH
Confidence 89999999999 99999999999865321 11 1 24569999999999 68999999999976778888
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 229 LKFLQNSMGV-VPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 229 ~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
++.....++. ..++..+..+...++ .+...++...++.+.+.+.|++ +|++..+ .+.
T Consensus 261 l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~---------------- 323 (399)
T 1c7n_A 261 FTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIE---------------- 323 (399)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCS----------------
T ss_pred HHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe-cCC----------------
Confidence 8776665532 445655544433332 2344455566777888888877 6664321 111
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~ 381 (393)
.+.++++.++........+.+.+. ..++.+..|..+.. ..++++|+|++.. +++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~~--~~~l~ 380 (399)
T 1c7n_A 324 GTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---------------------GGIGFERINLAAP--SSVIQ 380 (399)
T ss_dssp BSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---------------------GGTTEEEEECCSC--HHHHH
T ss_pred ceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC---------------------CCCCeEEEEeccC--HHHHH
Confidence 123457888520012334555553 44666655544321 0158999999876 33344
Q ss_pred HHHHHH
Q psy12791 382 DLDQAL 387 (393)
Q Consensus 382 ~l~~al 387 (393)
.+.+.|
T Consensus 381 ~~l~~l 386 (399)
T 1c7n_A 381 ESLERL 386 (399)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=254.05 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=227.7
Q ss_pred CCCCC-CCCCC-CCccCCeeeeCCCCCCCC---CccccCC---CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCVIP-PIILSTTFKQNTPGQPPQ---GFEYSRS---NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~~~-p~~~~~~~~~~~~~~~~~---~~~y~~~---~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~ 92 (393)
.+++| +++.+ ++.+++.+.+++.+.+.. .+..++| ..+...++|+++|+++|.++.+++++|++++ .++..
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~ 118 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAA 118 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHH
Confidence 35677 66665 445666666554332111 1112223 3477899999999999999999999998887 77777
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCC---CcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPN---TKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
++++||.|+++.|+|+. +...++..|.+++.+|..|++++++.+++. +++|++++|+||||.++|+++|.++|
T Consensus 119 ~~~~gd~v~~~~~~~~~----~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 194 (384)
T 1bs0_A 119 MMAKEDRIAADRLSHAS----LLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVT 194 (384)
T ss_dssp HCCTTCEEEEETTCCHH----HHHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred hCCCCcEEEEcccccHH----HHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHH
Confidence 88999999999999985 455667789999999988999999888653 78999999999999999999999999
Q ss_pred HhCCCcEEEEeCccCccccc---CC----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCC
Q psy12791 170 KQHPDILLVLDNTFLTAYYQ---KS----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVP 240 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~---~~----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~ 240 (393)
+++ |+++|+||+|+.+... .+ ...+.|++++|+||++ |++| ||++++ +++++.++.... ..+...
T Consensus 195 ~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~ 268 (384)
T 1bs0_A 195 QQH-NGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSG---AAVLCS-STVADYLLQFARHLIYSTSM 268 (384)
T ss_dssp HHT-TCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCC
T ss_pred HHc-CcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hccC---cEEEeC-HHHHHHHHHhchhhhcCCCC
Confidence 999 9999999999876431 11 1234789999999999 5766 999997 888888765422 223345
Q ss_pred CHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 241 SPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 241 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
++..+..+...++. ....+++..++.+.+.+.|++++ +. +. +. .+.++++.++ +.
T Consensus 269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-~~-~~----------------~~~~~~~~~~-~~ 328 (384)
T 1bs0_A 269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-FT-LA-DS----------------CSAIQPLIVG-DN 328 (384)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CE-EC-SC----------------CSSBCCEEEE-SH
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-Cc-cc-CC----------------CCCEEEEEeC-CH
Confidence 66665544433332 23456666777888888887652 22 21 11 2567788884 44
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....+.+.+...++.+..|..+.. ...++++|++++..+++++++.+.++|+++
T Consensus 329 ~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 329 SRALQLAEKLRQQGCWVTAIRPPTV--------------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHHHHTTEECCEECTTSS--------------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEeecCCCC--------------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 4556676666555666655432210 012579999999998999999999988865
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=260.68 Aligned_cols=318 Identities=16% Similarity=0.119 Sum_probs=220.0
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CCC----cEEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EAK----HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~~----~~i~~~~G~~a-l-~~~ 90 (393)
+++| +++.+++++++.+.+++.+.+... ....|++ ++..++|+++|+++ |.+ ++|++++|+++ + .++
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~ 126 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIP-ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVP 126 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCH-HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHH
Confidence 4677 778888877666665554432221 1234444 46789999999998 864 57888888665 7 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
..++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+.+++++|++++|+||||.++|
T Consensus 127 ~~l~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 202 (404)
T 2o1b_A 127 TCVINPGDYVLLPDPGYTD----YLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEV 202 (404)
T ss_dssp HHHCCTTCEEEEEESCCSS----HHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHH
T ss_pred HHhcCCCCEEEEcCCCchh----HHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHH
Confidence 7788899999999999997 455667789999888763 567777777667899999999999999997
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCccccc-CC---CCC----cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQ-KS---LPW----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~-~~---~~~----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ |+++|+||+|+.+.+. .+ ... ++++++.|+||++ |++|+|+||++++ +++++.++...
T Consensus 203 l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~ 279 (404)
T 2o1b_A 203 FDEAIAKFKGT-DTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGN-KDMIQALKKYQ 279 (404)
T ss_dssp HHHHHHHHTTS-SCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEEC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecC-HHHHHHHHHHH
Confidence 67889999999 9999999999986532 11 111 4579999999999 6899999999997 88988887766
Q ss_pred HhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 234 NSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
..+....++..+..+...++. +...+++..++.+.+.+.|+++ ++. +..+. .+.++++
T Consensus 280 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~ 341 (404)
T 2o1b_A 280 THTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLP-FVHAK----------------GGIYVWL 341 (404)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCC----------------BSSEEEE
T ss_pred hhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCe-ecCCC----------------cceEEEE
Confidence 655555666665554444332 3444555667778888888775 333 22221 1335888
Q ss_pred EEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
.++.. .....+.+.+. ..++.+..|..+... .++++|||++. ++++++.+.+.|.
T Consensus 342 ~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------~~~~iRis~~~--~~e~l~~~l~~l~ 397 (404)
T 2o1b_A 342 ETPPG-YDSEQFEQFLVQEKSILVAPGKPFGEN---------------------GNRYVRISLAL--DDQKLDEAAIRLT 397 (404)
T ss_dssp ECCTT-CCHHHHHHHHHHHHCEECEESGGGCGG---------------------GTTEEEEECCS--CTTHHHHHHHHHH
T ss_pred eCCCC-CCHHHHHHHHHHHCCEEEeCchhhCcC---------------------CCCeEEEEEcC--CHHHHHHHHHHHH
Confidence 88421 12233444432 335555555443210 15899999997 4455666666665
Q ss_pred Hh
Q psy12791 389 KA 390 (393)
Q Consensus 389 ~~ 390 (393)
++
T Consensus 398 ~~ 399 (404)
T 2o1b_A 398 EL 399 (404)
T ss_dssp GG
T ss_pred HH
Confidence 54
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=256.51 Aligned_cols=320 Identities=13% Similarity=0.064 Sum_probs=228.6
Q ss_pred CCCCC-CCCCCCCcc--CCeeeeCCCCCCCC------CccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCVIPPIIL--STTFKQNTPGQPPQ------GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~--~~~~~~~~~~~~~~------~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~ 91 (393)
.+++| +++ +|+++ ++.+.+++.+.+.. ...|.....+...++|+++|+++|.++++++++|++++ .++.
T Consensus 45 ~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~ 123 (401)
T 1fc4_A 45 SHVINFCAN-NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFE 123 (401)
T ss_dssp CEEEECCCS-CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHH
T ss_pred ccEEEeecc-CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHH
Confidence 35667 555 77763 55555544322110 11222112567899999999999999999999999987 6677
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC------CCcEEEEecCCCCcccccCHHHH
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP------NTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l 165 (393)
.++++||.|+++.|+|+++ ...++..|++++.++..|++++++.+++ ++++|++++|+||||.++|+++|
T Consensus 124 ~~~~~gd~v~~~~~~~~~~----~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i 199 (401)
T 1fc4_A 124 TLLGAEDAIISDALNHASI----IDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGV 199 (401)
T ss_dssp HHCCTTCEEEEETTCCHHH----HHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHH
T ss_pred HHcCCCCEEEEcchhHHHH----HHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHH
Confidence 7889999999999999753 3456788999999998889999888864 78999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccC-ccccc--------CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--
Q psy12791 166 SAVVKQHPDILLVLDNTFL-TAYYQ--------KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-- 234 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~-~~~~~--------~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-- 234 (393)
.++|+++ |+++|+||+|+ .+... ..+..+.|++++|+||+++|++| ||++++ +++++.+.....
T Consensus 200 ~~l~~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g---G~~~~~-~~~~~~l~~~~~~~ 274 (401)
T 1fc4_A 200 CDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAAR-KEVVEWLRQRSRPY 274 (401)
T ss_dssp HHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEEC-HHHHHHHHHHCHHH
T ss_pred HHHHHHc-CCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC---EEEEcC-HHHHHHHHHhCcCc
Confidence 9999999 99999999996 44321 11223579999999999955554 999997 888888875432
Q ss_pred hcCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
.+....++..+..+...++.+ ...+++..++.+.+.+.|+++ ++. + .+. .+.++++.+
T Consensus 275 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~~~~~~~~~ 335 (401)
T 1fc4_A 275 LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFT-L-AGA----------------DHAIIPVML 335 (401)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCS----------------SSSEEEEEE
T ss_pred eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCc-c-cCC----------------CCCEEEEEc
Confidence 234456666665555444333 356667778888888888865 322 1 121 367889998
Q ss_pred cCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+ +......+.+.+...++.+..|..+.. + ..++++|++++...++++++.+.++|+++.
T Consensus 336 ~-~~~~~~~l~~~l~~~gi~v~~~~~~~~---~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 336 G-DAVVAQKFARELQKEGIYVTGFFYPVV---P-----------------KGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp E-CHHHHHHHHHHHHHTTEECCEECTTSS---C-----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHCCcEEeeecCCCC---C-----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 5 444556666666555666655433211 0 114789999998888888888888887653
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=256.23 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=224.0
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHh----CC----Cc-EEEeccHHHH-H-H
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLE----EA----KH-GLCYSSGLGA-V-T 88 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~----~~----~~-~i~~~~G~~a-l-~ 88 (393)
.+++| +++.+++.+++.+.+++.+.+. ....|+++ +..++|+++|+++ |. ++ .+++++|+++ + .
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~---~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~ 106 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLH---ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFS 106 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGG---GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhh---hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHH
Confidence 46778 8888888877777766655432 23344443 4678999998876 53 35 7888888765 7 6
Q ss_pred HHHHhcCCC-----CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 89 AVTHLLSAG-----DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 89 ~~~~~~~~g-----d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
++..++++| |+|+++.|+|++ +...++..|.+++.++.+ |++++++++.+++++|++++||||||
T Consensus 107 ~~~~~~~~g~~~~~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG 182 (396)
T 3jtx_A 107 FVQTVLNPVSDGIKPAIVSPNPFYQI----YEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSG 182 (396)
T ss_dssp HHHHHCCC---CCCCEEEEEESCCHH----HHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTC
T ss_pred HHHHHhCCCCccCCCEEEEcCCCcHh----HHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCC
Confidence 677788886 799999999985 566778899999999863 67788888877899999999999999
Q ss_pred cccCHHH---HHHHHHhCCCcEEEEeCccCcccccC--CC-----------CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 158 TVFDVKA---ISAVVKQHPDILLVLDNTFLTAYYQK--SL-----------PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 158 ~~~~~~~---l~~l~~~~~~~~livDea~~~~~~~~--~~-----------~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
.+++.++ |.++|+++ |+++|+||+|+.+.... +. ..+.++++.|+||.+ |++|+|+||++++
T Consensus 183 ~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~ 260 (396)
T 3jtx_A 183 SVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRSGFVAGD 260 (396)
T ss_dssp CCCCHHHHHHHHHHHHHH-CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCCEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccceEEEEeC
Confidence 9998555 88899999 99999999999865432 22 146789999999999 6999999999987
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhh
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK---TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~ 298 (393)
+++.+.+.......+...++..+..+...++ .+...++++.++.+.+.+.|++... +..+.
T Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~------------ 324 (396)
T 3jtx_A 261 -AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFD---VKLPD------------ 324 (396)
T ss_dssp -HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTSC---CCCCS------------
T ss_pred -HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccCCC------------
Confidence 8899988877666566666666555544432 3445566666777777888875411 11111
Q ss_pred hcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChH
Q psy12791 299 QWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYT 377 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~ 377 (393)
.+.++++.+++ .....+.+.+ +..++.+..|..++..... .+..++++|||++. ++
T Consensus 325 ----~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~---------------~~~~~~~iRis~~~--~~ 381 (396)
T 3jtx_A 325 ----ASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLARDTEQ---------------GNPGEGYVRIALVA--DV 381 (396)
T ss_dssp ----SSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCCCCTT---------------CCTTTTEEEEECCS--CH
T ss_pred ----eeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCCcccc---------------cCCCCCeEEEEEcC--CH
Confidence 24578888853 1223344443 3336666666554321100 01236899999987 56
Q ss_pred HHHHHHHHHHHHh
Q psy12791 378 DLIADLDQALRKA 390 (393)
Q Consensus 378 ~~i~~l~~al~~~ 390 (393)
++++.+.+.|.++
T Consensus 382 ~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 382 ATCVKAAEDIVSL 394 (396)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=253.99 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=218.6
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~ 91 (393)
+++| +++.+|+.+++.+.+++.+.+ .....|++ .+..++|+++|+++ |. ++.+++++|+++ + .++.
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~---~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~ 100 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT---HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPS 100 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG---GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh---hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHH
Confidence 7788 888899888777777665553 23344544 35688999999886 74 367777777665 7 6777
Q ss_pred HhcCC--CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH----HHHhhcCCCCcEEEEecCCCCcccccC---H
Q psy12791 92 HLLSA--GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE----NLIKYIKPNTKMVWIENPTNPLMTVFD---V 162 (393)
Q Consensus 92 ~~~~~--gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~----~l~~~l~~~~~~v~l~~p~nptG~~~~---~ 162 (393)
.++++ ||+|+++.|+|.+ +...++..|.+++.++.++.+ ++++.+.+++++|++++||||||.++| +
T Consensus 101 ~~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l 176 (376)
T 3ezs_A 101 FVLFDYQNPTIAYPNPFYQI----YEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEEL 176 (376)
T ss_dssp HHTTTCSSCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHH
T ss_pred HHcCCCCCCEEEEecCCcHh----HHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHH
Confidence 88899 9999999999985 566678889999999875321 455555567899999999999999998 6
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccC-CC------------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQK-SL------------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~-~~------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
++|.++|+++ |+++|+||+|..+.... +. ..++++++.|+||++ |++|+|+||++++ +++.+.+
T Consensus 177 ~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~ 253 (376)
T 3ezs_A 177 ISWVKLALKH-DFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD-SRLLEKY 253 (376)
T ss_dssp HHHHHHHHHH-TCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC-HHHHHHH
T ss_pred HHHHHHHHHc-CcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC-HHHHHHH
Confidence 6777779999 99999999999865422 11 346779999999999 7999999999987 8899988
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
...........++..+..+...++. +...++.+.++.+.+.+.|+ ++ ..|. .+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~---~~~~----------------~~~~ 311 (376)
T 3ezs_A 254 KAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NT---LIYP----------------YSFY 311 (376)
T ss_dssp HHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TC---CCCS----------------BSSE
T ss_pred HHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CC---CCCC----------------cceE
Confidence 8766655555666665555444432 34445555555666666554 21 1121 3567
Q ss_pred EEEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 307 LSFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+++.++ + ...+.+.+.. .++.+..|..+... +..++++|||++. ++++++.+.+
T Consensus 312 ~~~~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~-------------------~~~~~~iRis~~~--~~~~i~~~l~ 366 (376)
T 3ezs_A 312 VYLPVQ-N---GENFAKTLYQNEGIITLPALYLGRN-------------------RIGADYVRLALVY--DTPLLEKPLE 366 (376)
T ss_dssp EEEECS-C---HHHHHHHHHHHHCCBCEEGGGGCST-------------------TTTTTEEEEECCS--CHHHHHHHHH
T ss_pred EEEECC-C---HHHHHHHHHHhCCEEEeCcHHhCCC-------------------CCCCCeEEEEEcC--CHHHHHHHHH
Confidence 888884 3 2334444433 45556555543210 0126899999985 6677777777
Q ss_pred HHHHhh
Q psy12791 386 ALRKAC 391 (393)
Q Consensus 386 al~~~~ 391 (393)
+|+++.
T Consensus 367 ~l~~~l 372 (376)
T 3ezs_A 367 IIETYR 372 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=260.72 Aligned_cols=317 Identities=13% Similarity=0.133 Sum_probs=220.2
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC------CC-cEEEeccHHH-HH-HH
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE------AK-HGLCYSSGLG-AV-TA 89 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~------~~-~~i~~~~G~~-al-~~ 89 (393)
..+++| +++.+|+.+++.+.+++.+.+.. .+.|+. .+ .++|+++|++++ .+ +.+++++|++ ++ .+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~ 97 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP---DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIA 97 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC---SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC---CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHH
Confidence 356778 78889988887777665443221 233443 23 678888888876 43 5666666655 57 67
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---CHHHHHhhcCCCCcEEEEecCCCCcccccC---HH
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~ 163 (393)
+..++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+.++++++++++|+||||.++| ++
T Consensus 98 ~~~~~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 173 (377)
T 3fdb_A 98 IDHFTPAQSKVIVPTPAYPP----FFHLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLN 173 (377)
T ss_dssp HHHHSCTTCCEEEEESCCTH----HHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHH
T ss_pred HHHhcCCCCEEEEcCCCcHh----HHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 77788999999999999995 556677789999999887 899999999888999999999999999997 66
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccC-----CCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQK-----SLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN 234 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~-----~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~ 234 (393)
+|.++|+++ |+++|+||+|+.+.... ++. .+.++++.|+||++ |++|+|+||+++.++++.+.++....
T Consensus 174 ~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~ 251 (377)
T 3fdb_A 174 ELCDLAHRY-DARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDAEHWQQLSP 251 (377)
T ss_dssp HHHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHHHHHHHSCH
T ss_pred HHHHHHHHc-CCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHHHHHHHHHH
Confidence 677779999 99999999999865432 111 23459999999999 79999999999866888888876544
Q ss_pred hcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 235 SMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
......++..+..+...++. +...+++..++.+.+.+.|++ +|++. +..+. .+.++++
T Consensus 252 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~----------------~~~~~~~ 314 (377)
T 3fdb_A 252 VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAK-ITPMQ----------------ATYLMWI 314 (377)
T ss_dssp HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCE-ECCCS----------------BCSEEEE
T ss_pred hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCce-EecCC----------------eeEEEEE
Confidence 44445566655544443322 345566677788888888877 66654 22221 1234578
Q ss_pred EEcC---CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 310 YVNG---GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 310 ~~~~---~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
.++. +.+..+.++++ .++.+..|..+... .++++|+|++. ++++++...++
T Consensus 315 ~~~~~~~~~~~~~~l~~~---~gi~v~~g~~~~~~---------------------~~~~~Ris~~~--~~e~i~~~l~~ 368 (377)
T 3fdb_A 315 DFRDTTIEGSPSEFFIEK---AKVAMNDGAWFGED---------------------GTGFCRLNFAT--SREVLEEAIDR 368 (377)
T ss_dssp ECTTSCCCSCHHHHHHHH---HCEECEEGGGGCGG---------------------GTTEEEEECCS--CHHHHHHHHHH
T ss_pred ECcccCCCHHHHHHHHHh---CCEEecCChhccCC---------------------CCCEEEEEeCC--CHHHHHHHHHH
Confidence 7752 11223333332 24555555443211 16899999985 55666666666
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
|.++
T Consensus 369 l~~~ 372 (377)
T 3fdb_A 369 MAKA 372 (377)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=254.87 Aligned_cols=322 Identities=19% Similarity=0.166 Sum_probs=215.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC--CC-cEEEeccHHH-HH-HHHHHhcC
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE--AK-HGLCYSSGLG-AV-TAVTHLLS 95 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~--~~-~~i~~~~G~~-al-~~~~~~~~ 95 (393)
+++| +...+++.+++.+.+++.+.+.. .+.|+.......+++++.+++.+| .+ +.+++++|++ ++ .++..+++
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~ 107 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTS 107 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSC
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCC
Confidence 5677 66667777777766655433222 344544322334445555555556 33 6777777755 57 67777889
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC--------CCHHHHHhhcC-CCCcEEEEecCCCCcccccC---HH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--------RKIENLIKYIK-PNTKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--------~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~---~~ 163 (393)
+||+|+++.|+|++ +...++..|.+++.++. .|++++++++. +++++|++++|+||||.+++ ++
T Consensus 108 ~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~ 183 (391)
T 3dzz_A 108 PGDQILVQEPVYNM----FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVK 183 (391)
T ss_dssp TTCEEEECSSCCHH----HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CCCeEEECCCCcHH----HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHH
Confidence 99999999999985 55667788999999987 37899999997 68999999999999999965 88
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccC--CCC--------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQK--SLP--------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~--~~~--------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+|.++|+++ |+++|+||+|+.+.... +.. .++++++.|+||++ |++|+|+||++++++++.+.++...
T Consensus 184 ~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~ 261 (391)
T 3dzz_A 184 RIAELCAKH-QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNPDLRARAEESF 261 (391)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCHHHHHHHHHHH
Confidence 888999999 99999999999755321 111 12349999999999 6999999999997688888887664
Q ss_pred HhcC-CCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 234 NSMG-VVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 234 ~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
...+ ...++..+..+...++ .+....++..++.+.+.+.|++ +|++. +..+. .+.++
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----------------~~~~~ 324 (391)
T 3dzz_A 262 FLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLDSN----------------ASYLA 324 (391)
T ss_dssp HHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCC----------------BSSEE
T ss_pred HhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EeccC----------------ceEEE
Confidence 4222 2333333333322222 2455666677788888898987 67654 22222 13456
Q ss_pred EEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
++.++........+.+.+ +..++.+..|..+... .++++|+|++ +++++++.+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------~~~~iRis~~--~~~~~i~~~l~~ 381 (391)
T 3dzz_A 325 WVDISALGMNAEDFCKYLREKTGLIISAGNGYRGN---------------------GHEFVRINLA--CPKELVIDGMQR 381 (391)
T ss_dssp EEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTT---------------------GGGEEEEECC--SCHHHHHHHHHH
T ss_pred EEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCC---------------------CCCEEEEEec--CCHHHHHHHHHH
Confidence 777742111334455555 3456666666543211 1589999998 455666666666
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
|.++
T Consensus 382 l~~~ 385 (391)
T 3dzz_A 382 LKQG 385 (391)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=255.24 Aligned_cols=318 Identities=17% Similarity=0.133 Sum_probs=215.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC--CccccCCCCchHHHHHHHHHHHh----CC---C-cEEEeccHHH-HH-H
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ--GFEYSRSNNPTRRNLERCIASLE----EA---K-HGLCYSSGLG-AV-T 88 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~--~~~y~~~~~~~~~~lr~~la~~~----~~---~-~~i~~~~G~~-al-~ 88 (393)
.+++| +++.+++++++.+.+++.+.+.. .+.|+ +.++..++|+++|+++ |. + +.+++++|++ ++ .
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~--~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~ 114 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYS--TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAH 114 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHH
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHH
Confidence 35677 77777777666666655443322 12333 2466789999999998 74 2 4677766655 57 6
Q ss_pred HHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 89 ~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
++..++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+.+++++|++++|+||||.++|
T Consensus 115 ~~~~~~~~gd~Vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~ 190 (412)
T 2x5d_A 115 LMLATLDHGDTILVPNPSYPI----HIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVE 190 (412)
T ss_dssp HHHHHCCTTCEEEEEESCCHH----HHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCC
T ss_pred HHHHhCCCCCEEEEcCCCchh----HHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCC
Confidence 677788999999999999985 555667789999988774 468888888888999999999999999998
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcccccC----C---CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+++|.++|+++ |+++|+||+|+.+.+.. + +. .+++++++|+||++ |++|+|+||++++ +++++.+
T Consensus 191 ~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l 267 (412)
T 2x5d_A 191 LDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGN-PELVSAL 267 (412)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEEC-HHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcC-HHHHHHH
Confidence 67899999999 99999999999865421 1 11 35789999999999 6899999999997 8888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG 305 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 305 (393)
...........++..+..+...++. +...+++..++.+.+.+.|+++ ++. +..+. .+.
T Consensus 268 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~ 329 (412)
T 2x5d_A 268 ARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWM-VENPK----------------ASM 329 (412)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCC-CCCCS----------------BSS
T ss_pred HHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ecCCC----------------eee
Confidence 7766655555666665544444432 4445666667778888888764 222 11111 134
Q ss_pred eEEEEEcCCH--HHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 306 MLSFYVNGGA--EETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 306 ~~~~~~~~~~--~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
++++.++... .....+.+.+ +..++.+..|..+.. ..++++|||++. ++++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRis~~~--~~~~l~~ 386 (412)
T 2x5d_A 330 YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---------------------YGDDHVRFALIE--NRDRLRQ 386 (412)
T ss_dssp EEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEEECCS--CHHHHHH
T ss_pred EEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC---------------------CCCCeEEEEecC--CHHHHHH
Confidence 6888884211 0234455554 223566655544311 015899999997 3444554
Q ss_pred HHHHHHH
Q psy12791 383 LDQALRK 389 (393)
Q Consensus 383 l~~al~~ 389 (393)
+.+.|.+
T Consensus 387 ~l~~l~~ 393 (412)
T 2x5d_A 387 AVRGIKA 393 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-32 Score=255.12 Aligned_cols=318 Identities=16% Similarity=0.155 Sum_probs=216.7
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CC---CcEEEeccHHH-HH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EA---KHGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~---~~~i~~~~G~~-al-~~~ 90 (393)
.+++| +++.+++.+++.+.+++.+.+.. ...|.. .++..++|+++|+++ |. ++.+++++|++ ++ .++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~ 107 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGP--AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLM 107 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC--TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC--CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHH
Confidence 35667 77777777666555543322111 122322 245788999999987 32 36777777755 57 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~-- 161 (393)
..++++||+|++++|+|++ +...++..|++++.++.+ |++++++.+++++++|++++|+||||.++|
T Consensus 108 ~~~~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 183 (388)
T 1j32_A 108 LAMIEPGDEVIIPAPFWVS----YPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPD 183 (388)
T ss_dssp HHHCCTTCEEEEESSCCTH----HHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred HHhcCCCCEEEEcCCCChh----HHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHH
Confidence 7778999999999999985 556677889999998874 689999999888999999999999999987
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC----C---CC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---LP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ |+++|+||+|+.+.+.. + +. .++++++.|+||++ |++|+|+||++++ +++.+.++
T Consensus 184 ~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~ 260 (388)
T 1j32_A 184 EVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGP-VPLVKAAT 260 (388)
T ss_dssp HHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeC-HHHHHHHH
Confidence 88999999999 99999999999865421 1 11 34789999999999 6999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
..........++..+..+...++ .+...+++..++.+.+.+.|++++++.. ..+. .+.+
T Consensus 261 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~----------------~~~~ 323 (388)
T 1j32_A 261 KIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC-PKPD----------------GAFY 323 (388)
T ss_dssp HHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC-CCCC----------------BTTE
T ss_pred HHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcc-cCCC----------------eeEE
Confidence 76655444555655544333332 2445566777788888888987665431 1111 1234
Q ss_pred EEEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHH
Q psy12791 307 LSFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQ 385 (393)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~ 385 (393)
+++.++........+.+.+.. .++.+..|..+. .++++|+|++ +++++++.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~~~~iRis~~--~~~~~i~~~~~ 378 (388)
T 1j32_A 324 MFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----------------------ADDCIRLSYA--TDLDTIKRGME 378 (388)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTBEEEECC--SCHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----------------------CCCcEEEEec--CCHHHHHHHHH
Confidence 555553100122344444432 355555443221 1478999997 45666666666
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
.|+++
T Consensus 379 ~l~~~ 383 (388)
T 1j32_A 379 RLEKF 383 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=263.32 Aligned_cols=327 Identities=12% Similarity=0.079 Sum_probs=225.8
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~ 90 (393)
.+++| +++.+|+.+++.+.+++.+.+.. ..+..|+++ +..++|+++|++++ . ++.+++++|+++ + .++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~ 122 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLRE-GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSF 122 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHH-TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhC-CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHH
Confidence 35678 88889988777777665443221 111334433 46899999999987 2 367777777665 7 666
Q ss_pred HHhc--CCCC--eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhc-CCCCcEEEEecCCCCcccc
Q psy12791 91 THLL--SAGD--HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYI-KPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 91 ~~~~--~~gd--~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l-~~~~~~v~l~~p~nptG~~ 159 (393)
..++ ++|| +|+++.|+|.+ +...++..|++++.++.+ |++++++++ ++++++|++++||||||.+
T Consensus 123 ~~l~~~~~gd~~~Vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~ 198 (437)
T 3g0t_A 123 LVANRTHKNREYGTLFIDPGFNL----NKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQC 198 (437)
T ss_dssp HHHTTSCTTCSCCEEEEESCCHH----HHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCC
T ss_pred HHHhcCCCCCccEEEEeCCCcHh----HHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCc
Confidence 7777 8999 99999999985 566677789999998874 788999999 6789999999999999999
Q ss_pred cC---HHHHHHHHHhCCCcEEEEeCccCccccc--CCC------------CCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 160 FD---VKAISAVVKQHPDILLVLDNTFLTAYYQ--KSL------------PWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 160 ~~---~~~l~~l~~~~~~~~livDea~~~~~~~--~~~------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
++ +++|.++|+++ |+++|+||+|+.+.+. .+. ..+++++++|+||++ |++|+|+||++++
T Consensus 199 ~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~- 275 (437)
T 3g0t_A 199 MTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVLMIS- 275 (437)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEEEEC-
T ss_pred CCHHHHHHHHHHHHHC-CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEEEEC-
Confidence 98 66789999999 9999999999875432 111 145679999999999 6999999999998
Q ss_pred hHHHH-H-----------------HHHHHHhcCCCCCHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 223 DSLQA-R-----------------LKFLQNSMGVVPSPFDCWLVTRGLKT-------LPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 223 ~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
+++++ . +...........++..+..+...++. +...++++.++.+.+.+.|+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 354 (437)
T 3g0t_A 276 GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN- 354 (437)
T ss_dssp HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 78877 6 65544433444555555444433321 5667777788888899999876
Q ss_pred CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 278 CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 278 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
++. +..+.-.. .....+.++++.+++ .....+.+.|...++.+..|..+..
T Consensus 355 g~~-~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~~~~~~~----------------- 405 (437)
T 3g0t_A 355 GFN-IVYDKDGN---------EPLADGFYFTVGYKG--MDSSKLIEKFVRYGMCAITLKTTGS----------------- 405 (437)
T ss_dssp TEE-ESSCEETT---------EECCSSSEEEEEETT--CCHHHHHHHHHHTTEECEESTTTTC-----------------
T ss_pred CCE-EeccccCC---------CCCceeEEEEEecCC--CCHHHHHHHHHHcCeEEeeccccCC-----------------
Confidence 432 21000000 000125678888852 1233444444444666555443210
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++++|+|++.. ++++++.+.++|+++.
T Consensus 406 ----~~~~~iRis~~~~-~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 406 ----KRNEAMRICTSLL-PESQFPDLEKRLQMLN 434 (437)
T ss_dssp ----CCTTCEEEECSSS-CGGGHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 1137899999955 6666777777777654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=251.47 Aligned_cols=317 Identities=18% Similarity=0.187 Sum_probs=237.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEE---eccHHHHH-HHHHHhcCCCCeEEEcC-CCccchHHHH-------HHhcccCCcE
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLC---YSSGLGAV-TAVTHLLSAGDHIISGD-DVYGGTYRYF-------AQVAPKIGLE 124 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~---~~~G~~al-~~~~~~~~~gd~vl~~~-~~y~~~~~~~-------~~~~~~~g~~ 124 (393)
++++..+|++.+|+++|.+.+++ ++||++|+ .++.+++++||+|++++ +.|+++...+ ...++..|++
T Consensus 71 ~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 150 (427)
T 3i16_A 71 GDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGIN 150 (427)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCE
T ss_pred CHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCE
Confidence 45678999999999999998888 89999998 77888999999999999 9998754333 1456778999
Q ss_pred EEeeCC-----CCHHHHHhhcC--CCCcEEEEec----CCCCcccccCHHHHHHHHHh--CCCcEEEEeCccCccc-ccC
Q psy12791 125 VDFVDL-----RKIENLIKYIK--PNTKMVWIEN----PTNPLMTVFDVKAISAVVKQ--HPDILLVLDNTFLTAY-YQK 190 (393)
Q Consensus 125 v~~~~~-----~d~~~l~~~l~--~~~~~v~l~~----p~nptG~~~~~~~l~~l~~~--~~~~~livDea~~~~~-~~~ 190 (393)
++.++. .|+++++++++ +++++|++++ |+||||.+.|+++|.++|++ + |+++++|++|+.+. ...
T Consensus 151 ~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~-g~~livD~a~~~~~~~~~ 229 (427)
T 3i16_A 151 YKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK-DIICFVDNCYGEFMDTKE 229 (427)
T ss_dssp EEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT-TSEEEEECTTTTTSSSSC
T ss_pred EEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC-CCEEEEECCCccccccCC
Confidence 999998 38999999998 7899999999 99999999999999999999 9 99999999999877 456
Q ss_pred CCCCcCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHHH--hcCCCCCH-HH-HHHHHhccCCHHHHHHHHHHH
Q psy12791 191 SLPWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQN--SMGVVPSP-FD-CWLVTRGLKTLPCRLKEHERG 265 (393)
Q Consensus 191 ~~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 265 (393)
+...++|++++|+||+++ .+| .++||++++ ++++++++.... ..+...++ .. ++++.++++.+..+++++.++
T Consensus 230 p~~~gaDiv~~S~sK~lg-g~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~ 307 (427)
T 3i16_A 230 PTDVGADLIAGSLIKNIG-GGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKG 307 (427)
T ss_dssp GGGGTCSEEEEETTSGGG-TTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCeEEEecCcccCC-CCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999995 444 678999997 899998876432 23332333 33 677788888888899999999
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccC--------Cc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLG--------GI 337 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g--------~~ 337 (393)
+..++++|+.++. .+ +|+ ++.+.+ .-+++|.+ ++.+.+.+|++.++.+....++- |+
T Consensus 308 a~~la~~L~~~g~--~V-~p~-~~~~~~----------~~i~~i~l-~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~gy 372 (427)
T 3i16_A 308 AILCSRIMELAGF--EV-MPK-YDEKRS----------DIIQSIKF-NDKDKLIEFCKGIQTGSPIDSFVSCEPWDMPGY 372 (427)
T ss_dssp HHHHHHHHHHTTC--EE-ESC-TTSCCS----------SSCEEEEC-SSHHHHHHHHHHHHHTCSSSTTSCCCCBCC---
T ss_pred HHHHHHHHHhCCC--ee-cCC-CCCCCc----------cEEEEEEE-CCHHHHHHHHHHHhhcCcccccccCcCCCCCCC
Confidence 9999999999876 35 666 433332 23889999 68899999999998754333221 11
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+-........-..-.-+........+.++...-|-.+-+...-.+..+++++.
T Consensus 373 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (427)
T 3i16_A 373 TDQVIMAAGAFIQGSSIELSADAPIREPYIAYLQGGLTFDHAKIGILIALSRIV 426 (427)
T ss_dssp CCCEEEEECCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred CCceeeccCcCCCCccccccCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 111000000000000011111122346788888888888888888888887764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=252.66 Aligned_cols=317 Identities=15% Similarity=0.133 Sum_probs=214.1
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCC--ccccCC-CCchHHHHHHHHHHHh----C--C-CcEEEeccHHH-HH-H
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQG--FEYSRS-NNPTRRNLERCIASLE----E--A-KHGLCYSSGLG-AV-T 88 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~--~~y~~~-~~~~~~~lr~~la~~~----~--~-~~~i~~~~G~~-al-~ 88 (393)
.+++| +++.+++.+++.+.+++.+.+... .....| +..+..++|+++++++ | . ++.|++++|++ ++ .
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~ 114 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHH
Confidence 35677 666555556666665543332111 002233 3456688999999886 3 3 36777777765 57 6
Q ss_pred HHHHhcCCC-CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC
Q psy12791 89 AVTHLLSAG-DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 89 ~~~~~~~~g-d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 161 (393)
++..++++| |+|+++.|+|++ +...++..|++++.++.+ |++++++++.+++++|++++||||||.++|
T Consensus 115 ~~~~l~~~g~d~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~ 190 (398)
T 3ele_A 115 CFRALTSDAYDEFITIAPYFPE----YKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYS 190 (398)
T ss_dssp HHHHHCCSTTCEEEEESSCCTH----HHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCC
T ss_pred HHHHHcCCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCC
Confidence 777788999 999999999985 666778889999999875 789999999889999999999999999999
Q ss_pred ---HHHHHHHHHh------CCCcEEEEeCccCcccccC-C--C---CCcCcEEEEcccccccCCCCceEEEEEecCh---
Q psy12791 162 ---VKAISAVVKQ------HPDILLVLDNTFLTAYYQK-S--L---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDD--- 223 (393)
Q Consensus 162 ---~~~l~~l~~~------~~~~~livDea~~~~~~~~-~--~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~--- 223 (393)
+++|.++|++ + |+++|+||+|+.+.+.. . . ..+.+++++|+||++ |++|+|+||++++++
T Consensus 191 ~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~ 268 (398)
T 3ele_A 191 EETIKKLSDLLEKKSKEIGR-PIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPDEVYD 268 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCTTSTT
T ss_pred HHHHHHHHHHHHhhhhccCC-CeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcchhhh
Confidence 6677788988 9 99999999999865421 1 1 135679999999999 699999999999843
Q ss_pred --HHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc
Q psy12791 224 --SLQARLKFLQNSM-GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300 (393)
Q Consensus 224 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~ 300 (393)
.+.+.+....... ....+...+..+...++... .++.+.++++.+.+.|+++ ++. +..+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-------------- 331 (398)
T 3ele_A 269 KAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKENRDLLYEGLTRI-GYH-CFKPD-------------- 331 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHHHHHHHHHHHHH-TCC-EECCS--------------
T ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHc-CCe-ecCCC--------------
Confidence 2334443333332 23344555555555444321 3456667777888888764 222 22222
Q ss_pred CCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHH
Q psy12791 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLI 380 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i 380 (393)
.+.++++.+++. ....+.+.+...++.+..|..+. .++++|+|++ .+++++
T Consensus 332 --~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~~--~~~e~i 382 (398)
T 3ele_A 332 --GAFYMFVKALED--DSNAFCEKAKEEDVLIVAADGFG-----------------------CPGWVRISYC--VDREMI 382 (398)
T ss_dssp --BSSEEEEECSSS--CHHHHHHHHHTTTEECEESGGGT-----------------------CTTEEEEECC--SCHHHH
T ss_pred --eeEEEEEEcCCC--CHHHHHHHHHHCCEEEeCccccC-----------------------CCCeEEEEec--CCHHHH
Confidence 133488888531 23445555555567776665431 1479999997 456666
Q ss_pred HHHHHHHHHh
Q psy12791 381 ADLDQALRKA 390 (393)
Q Consensus 381 ~~l~~al~~~ 390 (393)
+.+.++|+++
T Consensus 383 ~~~l~~l~~~ 392 (398)
T 3ele_A 383 KHSMPAFEKI 392 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=253.53 Aligned_cols=319 Identities=18% Similarity=0.197 Sum_probs=216.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CC---CcE-EEeccH-HHHH-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EA---KHG-LCYSSG-LGAV-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~---~~~-i~~~~G-~~al-~~ 89 (393)
.+++| +.+.+++.+++.+.+++.+.+.. ...|+. ..+..++|+++|+++ |. ++. +++++| ++++ .+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP--NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC--TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 35667 67777776666655544332211 122331 236789999999988 73 245 666666 4557 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
+..++++||+|++++|+|++ +...++..|++++.++.+ |++++++.+.+++++|++++|+||||.+++
T Consensus 104 ~~~~~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~ 179 (389)
T 1gd9_A 104 LSAFLKDGEEVLIPTPAFVS----YAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 179 (389)
T ss_dssp HTTTCCTTCEEEEEESCCTT----HHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred HHHhCCCCCEEEEcCCCchh----HHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCH
Confidence 66778899999999999996 455567789999888753 789999999888999999999999999996
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-C----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-P----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ |+++|+||+|+.+.... ++ . .++|+++.|+||++ |++|+|+||++++ +++++.++
T Consensus 180 ~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~ 256 (389)
T 1gd9_A 180 KDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAP-SWIIERMV 256 (389)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc-CCcccceEEEEEC-HHHHHHHH
Confidence 88999999999 99999999999865421 11 1 35689999999999 6999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCCH------HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKTL------PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
..........++..+..+...++.. ...+++..++.+.+.+.|+++ ++. +..+. .+
T Consensus 257 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~ 318 (389)
T 1gd9_A 257 KFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLP-TVKPK----------------GA 318 (389)
T ss_dssp HHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCC----------------BT
T ss_pred HHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----------------ee
Confidence 7665544555666666555555542 334455566777778888765 332 11111 13
Q ss_pred ceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADL 383 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l 383 (393)
.++++.++........+.+.+. ..++.+..|..+... .++++|+|++. ++++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------~~~~iRi~~~~--~~~~i~~~ 375 (389)
T 1gd9_A 319 FYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA---------------------GEGYVRISYAT--AYEKLEEA 375 (389)
T ss_dssp TEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG---------------------GTTBEEEECCS--CHHHHHHH
T ss_pred eEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCC---------------------CCCeEEEEecC--CHHHHHHH
Confidence 3567777410112334555543 445555555433210 15799999986 45555555
Q ss_pred HHHHHHh
Q psy12791 384 DQALRKA 390 (393)
Q Consensus 384 ~~al~~~ 390 (393)
.+.|.++
T Consensus 376 l~~l~~~ 382 (389)
T 1gd9_A 376 MDRMERV 382 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-30 Score=246.90 Aligned_cols=290 Identities=16% Similarity=0.195 Sum_probs=202.4
Q ss_pred CchHHHHHHHHHHHh----CCC----------cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccC
Q psy12791 58 NPTRRNLERCIASLE----EAK----------HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 58 ~~~~~~lr~~la~~~----~~~----------~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
..++.+||+++++++ |.+ ++|++|+|+++ + .++..++++||+|++++|+|++ +...++..
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~ 152 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSG----TLQSLHPL 152 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHH----HHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHH----HHHHHHHc
Confidence 356778999988875 543 48899888775 7 7777888999999999999985 66677889
Q ss_pred CcEEEeeCCC----CHHHHHhhcC------------CCCcEEEE-ecCCCCcccccCHH---HHHHHHHhCCCcEEEEeC
Q psy12791 122 GLEVDFVDLR----KIENLIKYIK------------PNTKMVWI-ENPTNPLMTVFDVK---AISAVVKQHPDILLVLDN 181 (393)
Q Consensus 122 g~~v~~~~~~----d~~~l~~~l~------------~~~~~v~l-~~p~nptG~~~~~~---~l~~l~~~~~~~~livDe 181 (393)
|++++.++.+ |++++++.+. +++++|++ ++||||||.+++.+ +|.++|+++ |++||+||
T Consensus 153 g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De 231 (425)
T 2r2n_A 153 GCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDD 231 (425)
T ss_dssp TCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred CCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEC
Confidence 9999999874 7888988876 35888877 79999999999855 899999999 99999999
Q ss_pred ccCcccccC----CC---C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Q psy12791 182 TFLTAYYQK----SL---P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 182 a~~~~~~~~----~~---~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
+|+.+.+.. ++ + .+.+++++||||++ | +|+|+||++++ +++++.+...........+...+..+...++
T Consensus 232 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~ 308 (425)
T 2r2n_A 232 PYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGP-KPLIERVILHIQVSTLHPSTFNQLMISQLLH 308 (425)
T ss_dssp TTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEE-HHHHHHHHHHHHTTTCSSCHHHHHHHHHHHH
T ss_pred CcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 998754321 11 1 24679999999999 7 99999999998 7888888776665555566666655544443
Q ss_pred C---------HHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 254 T---------LPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 254 ~---------~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
. +...++.+.++++.+.+.|++ ++++..+..|. .+.++++.+++..+..+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~----------------~g~~~~~~~~~~~~~~~~~~~ 372 (425)
T 2r2n_A 309 EWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA----------------AGMFLWIKVKGINDVKELIEE 372 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS----------------BSSEEEEEETTCSCCHHHHHT
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC----------------ceEEEEEEeCCCCCHHHHHHH
Confidence 2 233344555667777788876 45543233332 246789998531111112233
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+...++.+..|..+.... +..++++|||++.. ++++++.+.+.|.++
T Consensus 373 ~l~~~gv~v~pg~~f~~~~------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 420 (425)
T 2r2n_A 373 KAVKMGVLMLPGNAFYVDS------------------SAPSPYLRASFSSA-SPEQMDVAFQVLAQL 420 (425)
T ss_dssp HHHHTTEECEEGGGGSSST------------------TSCCCEEEEECSSC-CHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEechhhhcCCC------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 3434466666665442110 01258999999853 555566666666544
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=250.71 Aligned_cols=307 Identities=13% Similarity=0.118 Sum_probs=218.7
Q ss_pred CC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHH------hCCC-cEEEeccHHHH-H-HHHHHh
Q psy12791 25 RS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASL------EEAK-HGLCYSSGLGA-V-TAVTHL 93 (393)
Q Consensus 25 ~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~------~~~~-~~i~~~~G~~a-l-~~~~~~ 93 (393)
+| +++.+|+++++.+.+++.+.+.. ......|+++...++|+++|++ ++.+ +.+++++|+++ + .++..+
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l 112 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAF 112 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHh
Confidence 67 88888888777776655433211 0112334444447999999998 4544 68888888776 7 677778
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHH
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
+++||+|++++|+|++ +...++..|.+++.++.+ |++++++.+.+ ++++|++++|+||||.++|.+++.+
T Consensus 113 ~~~gd~Vl~~~~~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (369)
T 3cq5_A 113 GGPGRTALGFQPSYSM----HPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER 188 (369)
T ss_dssp CSTTCEEEEEESSCTH----HHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred cCCCCEEEEcCCChHH----HHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 8999999999999985 556677889999988764 68999988877 7999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCccCcccccCC-C----CCc-CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQKS-L----PWG-VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~~-~----~~~-~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
+++.+ ++++|+||+|+.+....+ . ..+ .++++.|+||++ |++|+|+||++++ +++++.++.....+ ..+
T Consensus 189 l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~~~~~--~~~ 263 (369)
T 3cq5_A 189 IINVA-PGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVAN-PAFIDAVMLVRLPY--HLS 263 (369)
T ss_dssp HHHHC-SSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEEC-THHHHHHHTTSCTT--CSC
T ss_pred HHHhC-CCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeC-HHHHHHHHHcCCCC--CCC
Confidence 99999 899999999998653211 1 134 679999999999 6899999999998 77877776443333 355
Q ss_pred HHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 242 PFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
+..+..+...++. +...+++..++.+.+.+.|++. ++. +. +. .+.++++.++.+ .
T Consensus 264 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~-~~----------------~~~~~~~~~~~~---~ 321 (369)
T 3cq5_A 264 ALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYA-VV-PS----------------ESNFVFFGDFSD---Q 321 (369)
T ss_dssp HHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCE-EE-CC----------------SSSEEEEECCSS---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE-EC-CC----------------CCeEEEEECCCC---H
Confidence 6555555444433 3345556667777888888753 333 22 22 256788887422 2
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+.+.+...++.+..|+ .++++|+|++ ++++++.+.++|+++.
T Consensus 322 ~~l~~~l~~~gi~v~~~~--------------------------~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 322 HAAWQAFLDRGVLIRDVG--------------------------IAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp HHHHHHHHHTTEECBCCS--------------------------CTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEECC--------------------------CCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 334444444455554431 1478999998 5677888888887664
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=245.96 Aligned_cols=216 Identities=21% Similarity=0.330 Sum_probs=170.6
Q ss_pred CCchHHHHHHHHHHHhC-CC-cEEEeccH-HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 57 NNPTRRNLERCIASLEE-AK-HGLCYSSG-LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~-~~-~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
+.++..+||+++|++++ .+ +.+++++| ++++ .++.+++++||+|+++.|+|++ +...++..|++++.++.+
T Consensus 61 ~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~ 136 (375)
T 3op7_A 61 WIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQ----LYDIPKSLGAEVDLWQIEE 136 (375)
T ss_dssp CTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTH----HHHHHHHTTCEEEEEEEEG
T ss_pred CCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEeccc
Confidence 34667899999999873 33 55555555 5567 7777889999999999999986 455567889999988864
Q ss_pred ------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCCCC-----CcCc
Q psy12791 132 ------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-----WGVD 197 (393)
Q Consensus 132 ------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-----~~~d 197 (393)
|++++++++++++++|++++|+||||.++| +++|.++|+++ |+++|+||+|+.+... +.. .+.+
T Consensus 137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~~~~-~~~~~~~~~~~~ 214 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSFSEL-DVPSIIEVYDKG 214 (375)
T ss_dssp GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCCSSS-CCCCHHHHCTTE
T ss_pred cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccc-CCCchhhhcCCE
Confidence 899999999989999999999999999999 99999999999 9999999999986543 111 3567
Q ss_pred EEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH----HHHHHHHHHHHHHHHH
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC----RLKEHERGSIEVAKFL 273 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l 273 (393)
+++.|+||.+ |++|+|+||++++ +++.+.++..........++..+..+...++.... .++...++.+.+.+.|
T Consensus 215 i~~~s~sK~~-~~~G~r~G~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 292 (375)
T 3op7_A 215 IAVNSLSKTY-SLPGIRIGWVAAN-HQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWI 292 (375)
T ss_dssp EEEEESSSSS-SCGGGCCEEEECC-HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeEChhhc-CCcccceEEEEeC-HHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6899999999995 89999887666655556667776666555544332 3444466777888888
Q ss_pred hhCCCcc
Q psy12791 274 ESHPCVK 280 (393)
Q Consensus 274 ~~~~~~~ 280 (393)
++++.+.
T Consensus 293 ~~~~~~~ 299 (375)
T 3op7_A 293 EEEPLVS 299 (375)
T ss_dssp HHCTTEE
T ss_pred hhCCCce
Confidence 8776654
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=255.79 Aligned_cols=325 Identities=17% Similarity=0.158 Sum_probs=223.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhC------CC--cEEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEE------AK--HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~------~~--~~i~~~~G~~a-l-~~~ 90 (393)
+.++ +.+.+++.+++.+.+++.+.+........|+. .+..++|+++|++++ .+ +.+++++|+++ + .++
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 108 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAF 108 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHH
Confidence 5667 77778887777776655443222211234443 366789999998875 32 46777777665 7 677
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----------------CHHHHHhhcCCCCcEEEEecCC
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----------------KIENLIKYIKPNTKMVWIENPT 153 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----------------d~~~l~~~l~~~~~~v~l~~p~ 153 (393)
..++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+++++++|++++|+
T Consensus 109 ~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~ 184 (422)
T 3fvs_A 109 QALVDEGDEVIIIEPFFDC----YEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPN 184 (422)
T ss_dssp HHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHcCCCCEEEEcCCCchh----hHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCC
Confidence 7788999999999999986 556677789999888653 7899999998889999999999
Q ss_pred CCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----C---C--CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 154 NPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---L--PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 154 nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
||||.+++ +++|.++|+++ |+++|+||+|+.+.+.. + + ..+.++++.|+||.+ |++|+|+||++++
T Consensus 185 nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~ 262 (422)
T 3fvs_A 185 NPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVLGP 262 (422)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEECC
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc-CCccceEEEEEeC
Confidence 99999995 88999999999 99999999999754321 1 1 125669999999999 6999999999997
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCC
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGL-----------KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~ 290 (393)
+++++.+...........++..+..+...+ +.+...++++.++++.+.+.|+++ ++. +..|.
T Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---- 335 (422)
T 3fvs_A 263 -DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PIIPQ---- 335 (422)
T ss_dssp -HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----
T ss_pred -HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----
Confidence 788888876665444445555544433322 234556677778888889999876 333 23333
Q ss_pred cchHHHhhhcCCCcceEEEEEcCCHHH------------HHHHHHh-cCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 291 PNHELAKSQWSGTSGMLSFYVNGGAEE------------TRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
.+.++++.+...... ...+... ++..++.+..|+.+.....
T Consensus 336 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~-------------- 389 (422)
T 3fvs_A 336 ------------GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPH-------------- 389 (422)
T ss_dssp ------------BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHH--------------
T ss_pred ------------eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcC--------------
Confidence 245678777420000 2233333 3334666666655432100
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
....++++|||++. ++++++...+.|+++
T Consensus 390 --~~~~~~~iRis~~~--~~e~i~~~l~~l~~~ 418 (422)
T 3fvs_A 390 --QKHFDHYIRFCFVK--DEATLQAMDEKLRKW 418 (422)
T ss_dssp --HTTSCSEEEEECCC--CHHHHHHHHHHHHHH
T ss_pred --CCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 00126899999987 666666666666654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=252.36 Aligned_cols=314 Identities=12% Similarity=0.077 Sum_probs=216.9
Q ss_pred CCCCC-CCCCC-CCccCCee--eeCCCCCCCCCccccCCCCc-hHHHHHHHHHHHh-----CCC-cE---EEeccHHH-H
Q psy12791 22 DQWRS-QCVIP-PIILSTTF--KQNTPGQPPQGFEYSRSNNP-TRRNLERCIASLE-----EAK-HG---LCYSSGLG-A 86 (393)
Q Consensus 22 ~~~~~-~~~~~-p~~~~~~~--~~~~~~~~~~~~~y~~~~~~-~~~~lr~~la~~~-----~~~-~~---i~~~~G~~-a 86 (393)
.+++| +.+.+ +++.++.+ .+++.+.+.. .....|+++ +..++|+++|+++ +.+ +. +++++|++ +
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~a 125 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTP-DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHG 125 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCG-GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHH
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHH
Confidence 45677 77777 67776666 6666555322 123345443 6889999999998 765 56 77777766 4
Q ss_pred H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhccc-CCcEEEeeCCC------CHHHHHhhcCC---CCcEEEEecCCCC
Q psy12791 87 V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK-IGLEVDFVDLR------KIENLIKYIKP---NTKMVWIENPTNP 155 (393)
Q Consensus 87 l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~v~~~~~~------d~~~l~~~l~~---~~~~v~l~~p~np 155 (393)
+ .++..++++||+|++++|+|++ +...++. .|++++.++.+ |++++++.+.+ ++++|++++||||
T Consensus 126 l~~~~~~l~~~gd~Vl~~~p~y~~----~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~np 201 (430)
T 2x5f_A 126 LSLVGDLFVNQDDTILLPEHNWGN----YKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNP 201 (430)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTH----HHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTT
T ss_pred HHHHHHHHhCCCCEEEEcCCcCcc----HHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCC
Confidence 7 6777788999999999999995 5666777 89999998863 67888888865 7899999999999
Q ss_pred cccccC---HHHHHHHHHh-----CCCcEEEEeCccCcccccC----CC-----C-CcC---cEEEEcccccccCCCCce
Q psy12791 156 LMTVFD---VKAISAVVKQ-----HPDILLVLDNTFLTAYYQK----SL-----P-WGV---DIVLYSLTKYMNGHSDVV 214 (393)
Q Consensus 156 tG~~~~---~~~l~~l~~~-----~~~~~livDea~~~~~~~~----~~-----~-~~~---di~~~S~sK~~~G~~G~r 214 (393)
||.++| +++|.++|++ + |+++|+||+|+.+.+.. ++ . .+. +++++|+||++ |++|+|
T Consensus 202 tG~~~~~~~l~~i~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r 279 (430)
T 2x5f_A 202 TGYTPTHKEVTTIVEAIKALANKGT-KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAWGFR 279 (430)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTTC-EEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCGGGC
T ss_pred CCCcCCHHHHHHHHHHHHhhhhccC-CEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-CCCCCC
Confidence 999999 8899999999 9 99999999999765421 21 1 345 78999999999 689999
Q ss_pred EEEEEe---cChHHHHHHHHHHHh----cCCCCCHHHHHHHHhccC-C---HHH---HHHHHHHHHHHHHHHHhhC---C
Q psy12791 215 MGATVT---NDDSLQARLKFLQNS----MGVVPSPFDCWLVTRGLK-T---LPC---RLKEHERGSIEVAKFLESH---P 277 (393)
Q Consensus 215 ~G~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~---~~~---~~~~~~~~~~~l~~~l~~~---~ 277 (393)
+||+++ + +++.+.+...... .....++..+..+...++ . ... .++++.++.+.+.+.|+++ .
T Consensus 280 iG~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 358 (430)
T 2x5f_A 280 VGFMTFGTSD-QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS 358 (430)
T ss_dssp CEEEEEBCCC-HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEEecCC-HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999 6 8888888765543 344556666666555555 3 222 4455556667777777621 1
Q ss_pred CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhh
Q psy12791 278 CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 278 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
++. +..+. .+.++++.+++ .....+.+.+.. .++.+..|
T Consensus 359 g~~-~~~~~----------------~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g--------------------- 398 (430)
T 2x5f_A 359 HWQ-AYDFN----------------SGYFMAIKVHD--VDPEALRKHLIDKYSIGVIAL--------------------- 398 (430)
T ss_dssp TEE-ECCCC----------------BSSEEEEEESS--SCHHHHHHHHHHHHCEECEEC---------------------
T ss_pred Cce-eeCCC----------------ceEEEEeCCCC--CCHHHHHHHHHHhCCEEEecC---------------------
Confidence 222 21111 13358888852 123344444443 45544433
Q ss_pred HhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 357 ~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++++|+|++.. ++++++.+.++|+++
T Consensus 399 ------~~~~iRis~~~~-~~e~i~~~~~~l~~~ 425 (430)
T 2x5f_A 399 ------NATDIRIAFSCV-EKDDIPHVFDSIAKA 425 (430)
T ss_dssp ------SSSEEEEEGGGS-CGGGHHHHHHHHHHH
T ss_pred ------CCCeEEEEEecC-CHHHHHHHHHHHHHH
Confidence 157999999953 444455555555443
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=248.10 Aligned_cols=321 Identities=13% Similarity=0.064 Sum_probs=216.3
Q ss_pred CCC-CCCCCC---CccCCeeeeCCCCCC--CCCccccCCCCc-hHHHHHHHHHHHhCCC-cEEEeccHHHH-H--HHH-H
Q psy12791 24 WRS-QCVIPP---IILSTTFKQNTPGQP--PQGFEYSRSNNP-TRRNLERCIASLEEAK-HGLCYSSGLGA-V--TAV-T 91 (393)
Q Consensus 24 ~~~-~~~~~p---~~~~~~~~~~~~~~~--~~~~~y~~~~~~-~~~~lr~~la~~~~~~-~~i~~~~G~~a-l--~~~-~ 91 (393)
.++ +.+.+| +.+++.+.+++.+.. ........|+++ +..+||+++|++++.+ ++|++|+|+++ + .++ .
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 567 777777 777767777665442 111123345444 5889999999999987 78999999775 4 343 3
Q ss_pred HhcCC------------CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCC-CCcEEE-EecCC
Q psy12791 92 HLLSA------------GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKP-NTKMVW-IENPT 153 (393)
Q Consensus 92 ~~~~~------------gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~-~~~~v~-l~~p~ 153 (393)
.+..+ +|+|++++|+|++ +...++..|++++.++.+ |++++++.+.+ ++++|+ +++||
T Consensus 114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~ 189 (422)
T 3d6k_A 114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDR----HFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFG 189 (422)
T ss_dssp HHHHCCTTCSSCGGGSSCCEEEEEESCCHH----HHHHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSC
T ss_pred HhcCcccccccccccCCCCEEEEeCCccHH----HHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCC
Confidence 44454 3479999999985 666777889999998874 78999998875 689988 68999
Q ss_pred CCcccccCHH---HHHHHHH-hCCCcEEEEeCccCc--cccc----CCC--------CCcCcEEEEcccccccCCCCceE
Q psy12791 154 NPLMTVFDVK---AISAVVK-QHPDILLVLDNTFLT--AYYQ----KSL--------PWGVDIVLYSLTKYMNGHSDVVM 215 (393)
Q Consensus 154 nptG~~~~~~---~l~~l~~-~~~~~~livDea~~~--~~~~----~~~--------~~~~di~~~S~sK~~~G~~G~r~ 215 (393)
||||.+++.+ +|.++|+ ++ |+++|+||+|.. +... .++ ..+++++++||||+. .+|+|+
T Consensus 190 NPtG~~~~~~~l~~l~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~--~~Glri 266 (422)
T 3d6k_A 190 NPTGVTFSEQTCRELAEMSTAAP-DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKIT--HAGSGV 266 (422)
T ss_dssp TTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTS--CTTSSC
T ss_pred CCCCCCCCHHHHHHHHHHHhhcc-CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhc--Ccccce
Confidence 9999999966 7777777 89 999999999985 2221 121 235689999999983 679999
Q ss_pred EEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHhh----CCCcceEeC
Q psy12791 216 GATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT-------LPCRLKEHERGSIEVAKFLES----HPCVKGVLH 284 (393)
Q Consensus 216 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~----~~~~~~v~~ 284 (393)
||++++ +++++.+...........+...+..+...++. +...++.+.++.+.+.+.|.+ .+.+. +..
T Consensus 267 G~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~-~~~ 344 (422)
T 3d6k_A 267 SFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAK-WTS 344 (422)
T ss_dssp EEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEE-ECC
T ss_pred EEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceE-EeC
Confidence 999997 88999888776665556667776666665554 122233344556666666653 12221 222
Q ss_pred CCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCc-cccccCcccccCCCCChhhHhhcCCC
Q psy12791 285 PGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGI-ESLADLPAEMTHKSIPKETRDALGIT 363 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~s~~~~~~~~~~~~~~~~~~~~~g~~ 363 (393)
|. .+.++|+.+++. ..+.+.+.+...++.+..|+. +..... ..
T Consensus 345 p~----------------~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~------------------~~ 388 (422)
T 3d6k_A 345 PT----------------GGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHND------------------PN 388 (422)
T ss_dssp CS----------------BSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCC------------------TT
T ss_pred CC----------------cceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCC------------------CC
Confidence 32 245789999532 233444555555677766432 211000 12
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 364 DNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 364 ~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++++|||++. .++++++.+.++|+++
T Consensus 389 ~~~iRis~~~-~~~e~i~~~~~~l~~~ 414 (422)
T 3d6k_A 389 NENIRLAPSL-PPVAELEVAMDGFATC 414 (422)
T ss_dssp SCEEEECCSS-SCHHHHHHHHHHHHHH
T ss_pred CCeEEEecCC-CCHHHHHHHHHHHHHH
Confidence 5899999997 5666666666665543
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=244.90 Aligned_cols=317 Identities=17% Similarity=0.186 Sum_probs=235.1
Q ss_pred CCchHHHHHHHHHHHhCCCcEEE---eccHHHHH-HHHHHhcCCCCeEEEcC-CCccchHHHH-------HHhcccCCcE
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLC---YSSGLGAV-TAVTHLLSAGDHIISGD-DVYGGTYRYF-------AQVAPKIGLE 124 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~---~~~G~~al-~~~~~~~~~gd~vl~~~-~~y~~~~~~~-------~~~~~~~g~~ 124 (393)
++++..+|++.+|+++|.+++++ ++||++|+ .++.+++++||+|++++ +.|+++...+ ...++..|++
T Consensus 72 ~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 151 (427)
T 3hvy_A 72 NDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVK 151 (427)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCE
T ss_pred CchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCE
Confidence 34678999999999999998888 89999998 77888999999999999 9998754333 1456678999
Q ss_pred EEeeCC----CCHHHHHhhcC--CCCcEEEEec----CCCCcccccCHHHHHHHHHh--CCCcEEEEeCccCccc-ccCC
Q psy12791 125 VDFVDL----RKIENLIKYIK--PNTKMVWIEN----PTNPLMTVFDVKAISAVVKQ--HPDILLVLDNTFLTAY-YQKS 191 (393)
Q Consensus 125 v~~~~~----~d~~~l~~~l~--~~~~~v~l~~----p~nptG~~~~~~~l~~l~~~--~~~~~livDea~~~~~-~~~~ 191 (393)
++.++. .|+++++++++ +++|+|++++ |+||||.+.|+++|.++|++ + |+++++|++|+.+. ...+
T Consensus 152 ~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~-g~~livD~a~~~~~~~~~p 230 (427)
T 3hvy_A 152 YKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE-NVIVFVDNCYGEFVEEKEP 230 (427)
T ss_dssp EEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS-SSEEEEECTTCTTTSSSCG
T ss_pred EEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC-CCEEEEECCccccccCCCC
Confidence 999998 58999999998 7899999999 99999999999999999999 8 99999999999887 4566
Q ss_pred CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCC--CCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 192 LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGV--VPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 192 ~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
...++|++++|+||+++|....++||++++ ++++++++.... ..+. .++...++++.++++.+..+++++.+++.
T Consensus 231 ~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~~~~~a~ 309 (427)
T 3hvy_A 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAV 309 (427)
T ss_dssp GGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777899999999999954322568999997 899998876542 2221 12233367777888888889999999999
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc--------CCccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL--------GGIES 339 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------g~~~s 339 (393)
.++++|+.++. .+ +|+ ++.+.+ ..+++|.+ ++.+.+.+|++.++.+....++ .|+.+
T Consensus 310 ~la~~L~~~g~--~V-~p~-~~~~~~----------~li~~~~l-~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~Gy~~ 374 (427)
T 3hvy_A 310 FCARIMELAGF--DV-LPK-YNDKRT----------DIIQAIKF-NDEKKLIDFIKGIQTASPVDSFVQCEAWDMPGYED 374 (427)
T ss_dssp HHHHHHHHTTC--EE-ESC-TTSCCS----------SSEEEEEC-SSHHHHHHHHHHHHHTCSSSTTCCC----------
T ss_pred HHHHHHHhCCC--ee-cCC-CCCCCc----------eEEEEEeC-CCHHHHHHHHHHhccccccccccCCCCCCCCCCcC
Confidence 99999998875 34 565 333322 23889999 6889999999999765432222 22222
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.........=..-.-+........+.++...-|-.+-+...-.+..+++++
T Consensus 375 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 375 KVIMAAGTFVQGASIELSADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp CEEEECCCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred ceeeeccccCCCccccccCCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence 211110000000011111112234678888888888888888888888765
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=242.47 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=232.8
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEE---eccHHHHH-HHHHHhcCCCCeEEEcC-CCccchHHHHH------HhcccCCcE
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLC---YSSGLGAV-TAVTHLLSAGDHIISGD-DVYGGTYRYFA------QVAPKIGLE 124 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~---~~~G~~al-~~~~~~~~~gd~vl~~~-~~y~~~~~~~~------~~~~~~g~~ 124 (393)
|++++..+|++.+|+++|.+++++ ++||++|+ .++.+++++||+|++++ +.|.++..... ..++..|++
T Consensus 56 y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~ 135 (409)
T 3jzl_A 56 YDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIG 135 (409)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCE
T ss_pred CChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCE
Confidence 345778999999999999998888 78999998 77888899999999998 99987443221 456778999
Q ss_pred EEeeCC-----CCHHHHHhhcCCCCcEEEEec----CCCCcccccCHHHHHHHHHh--CCCcEEEEeCccCccc-ccCCC
Q psy12791 125 VDFVDL-----RKIENLIKYIKPNTKMVWIEN----PTNPLMTVFDVKAISAVVKQ--HPDILLVLDNTFLTAY-YQKSL 192 (393)
Q Consensus 125 v~~~~~-----~d~~~l~~~l~~~~~~v~l~~----p~nptG~~~~~~~l~~l~~~--~~~~~livDea~~~~~-~~~~~ 192 (393)
++.++. .|++++++++++++++|++++ |+||||.+.|+++|.++|++ + |+++++|++|+.+. ...+.
T Consensus 136 ~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~-~~~livD~a~~~~~~~~~p~ 214 (409)
T 3jzl_A 136 YSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP-EVIVFVDNCYGEFVEYQEPP 214 (409)
T ss_dssp EEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTTSSCCSG
T ss_pred EEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC-CCEEEEeCCcccccccCCcc
Confidence 999998 489999999999999999999 99999999999999999999 9 99999999999876 34566
Q ss_pred CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cC--CCCCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy12791 193 PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MG--VVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268 (393)
Q Consensus 193 ~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..++|++++|+||+++|....++||++++ ++++++++..... .+ .......+..+.++++.+..+++++.+++..
T Consensus 215 ~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~~~~a~~ 293 (409)
T 3jzl_A 215 EVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARF 293 (409)
T ss_dssp GGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67899999999999954333568999997 8999988764422 11 1122222345667777788899999999999
Q ss_pred HHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc--------CCcccc
Q psy12791 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL--------GGIESL 340 (393)
Q Consensus 269 l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------g~~~s~ 340 (393)
++++|+.++. .+ +|+ ++.+.+ .-++.|.+ ++.+.+.+|++.|+......++ .|+++.
T Consensus 294 la~~L~~~g~--~v-~p~-~~~~~~----------~~i~~i~l-~~~~~~~~~~~~L~~~~~~~s~~~p~~~~~~gy~~~ 358 (409)
T 3jzl_A 294 TAAMLAEFGV--EA-DPV-WDAPRT----------DLIQSVSF-HNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDD 358 (409)
T ss_dssp HHHHHHHTTC--EE-ESC-TTSCCS----------SSCCEEEC-SCHHHHHHHHHHHHHTSSSSTTSCCCCBCCTTCSSC
T ss_pred HHHHHHhCCC--cc-cCC-CCCCCc----------cEEEEEEe-CCHHHHHHHHHHHHhcCcccccCCCCCCCCCCCCCc
Confidence 9999998865 34 565 333222 23788999 5889999999999865432222 111111
Q ss_pred ccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 341 ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
........=..-.-+........+.++...-|-.+-+...-.+..+++++
T Consensus 359 ~~~~~~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 359 VIMAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp EEEECCCSSTTCSSSCEEEEESSTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred eeEeccccCCCcceeecCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHhh
Confidence 10000000000001111112234678888888888888878888887765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=250.57 Aligned_cols=324 Identities=16% Similarity=0.144 Sum_probs=221.2
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhC------C-C-cEEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEE------A-K-HGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~------~-~-~~i~~~~G~~a-l-~~ 89 (393)
.+.++ +.+.+++.+++.+.+++.+.+.. ..+..|+. .+..++|+++|++++ . + +.+++++|+++ + .+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~ 101 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFI-DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNS 101 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTC-GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH
Confidence 35666 67777777777776655443222 12334544 357889999999876 3 2 57777777665 7 67
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----------------CHHHHHhhcCCCCcEEEEecCC
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----------------KIENLIKYIKPNTKMVWIENPT 153 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----------------d~~~l~~~l~~~~~~v~l~~p~ 153 (393)
+..++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+.+++++|++++|+
T Consensus 102 ~~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~ 177 (410)
T 3e2y_A 102 IQGLVDPGDEVIIMVPFYDC----YEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPH 177 (410)
T ss_dssp HHHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHhcCCCCEEEEeCCCchh----hHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCC
Confidence 77788999999999999986 556677789999888764 7899999998889999999999
Q ss_pred CCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----C---C--CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 154 NPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---L--PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 154 nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
||||.+++ +++|.++|+++ |+++|+||+|+.+.+.. + . ..+.++++.|+||.+ |++|+|+||++++
T Consensus 178 nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~ 255 (410)
T 3e2y_A 178 NPLGKVYTRQELQVIADLCVKH-DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGWSIGP 255 (410)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEEEECC
T ss_pred CCCCcCcCHHHHHHHHHHHHHc-CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEEEEEC
Confidence 99999985 88899999999 99999999998754321 1 1 124569999999999 6999999999997
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCC
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGL-----------KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~ 290 (393)
+++++.++..........++..+..+...+ +.+...++++.++++.+.+.|+++ ++. +..|.
T Consensus 256 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---- 328 (410)
T 3e2y_A 256 -AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK-PIVPD---- 328 (410)
T ss_dssp -HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----
T ss_pred -HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----
Confidence 888888876665444445555554433322 224556667778888889999876 333 22332
Q ss_pred cchHHHhhhcCCCcceEEEEEcC--C---H-----HHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 291 PNHELAKSQWSGTSGMLSFYVNG--G---A-----EETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~--~---~-----~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
.+.++++.+.. . . .....+... ++..++.+..|+.+..... ..
T Consensus 329 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~----------~~---- 382 (410)
T 3e2y_A 329 ------------GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS----------KP---- 382 (410)
T ss_dssp ------------BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT----------HH----
T ss_pred ------------ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC----------CC----
Confidence 24567777642 0 0 001122222 2333566666654421100 00
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..++++|||++. ++++++.+.+.|++
T Consensus 383 --~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 383 --HFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp --HHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred --CCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 015899999887 66666666666654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=249.00 Aligned_cols=284 Identities=18% Similarity=0.160 Sum_probs=199.8
Q ss_pred chHHHHHHHHHHHh----CC--CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLE----EA--KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~~--~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
.+..+||+++|+++ |. ++.|++++|+++ + .++..++++||+|+++.|+|.+ +...++..|++++.++.
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLA----ALQAFNFYEPQYIQIPL 193 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTCCEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHH----HHHHHHHcCCEEEEecc
Confidence 56889999999998 87 467888888765 7 6777788999999999999985 56667788999999887
Q ss_pred C----CHHHHHhhcC----C--CCcEEE-EecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----CC
Q psy12791 131 R----KIENLIKYIK----P--NTKMVW-IENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL 192 (393)
Q Consensus 131 ~----d~~~l~~~l~----~--~~~~v~-l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~~ 192 (393)
+ |++++++.++ + ++++|+ +++|+||||.+++ +++|.++|+++ |++||+||+|..+.+.. ++
T Consensus 194 ~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~~~~~g~~~~~~ 272 (448)
T 3aow_A 194 DDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKI 272 (448)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTTCBCSSCCCCCT
T ss_pred CCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCH
Confidence 4 7899998886 5 789985 5899999999998 56899999999 99999999999865421 11
Q ss_pred -C---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC------HHHHHHHH
Q psy12791 193 -P---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT------LPCRLKEH 262 (393)
Q Consensus 193 -~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 262 (393)
. .+.++++.||||++ | +|+|+||++++ +++++.+...........++..+..+...++. +...++.+
T Consensus 273 ~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~ 349 (448)
T 3aow_A 273 KALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFY 349 (448)
T ss_dssp GGGCTTSCEEEEEESTTTT-C-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEccchhhc-c-ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 24679999999999 6 99999999998 88988887665543334456655555444432 33344555
Q ss_pred HHHHHHHHHHHhh-CC-CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCcccc
Q psy12791 263 ERGSIEVAKFLES-HP-CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESL 340 (393)
Q Consensus 263 ~~~~~~l~~~l~~-~~-~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~ 340 (393)
.++++.+.+.|++ +| ++. +..|. .+.++|+.++.. .....+.+.+...++.+..|..+..
T Consensus 350 ~~~~~~l~~~L~~~~~~g~~-~~~p~----------------~g~~~~v~~~~~-~~~~~l~~~l~~~gV~v~pg~~f~~ 411 (448)
T 3aow_A 350 KPRRDAMLEALEEFMPEGVK-WTKPE----------------GGMFIWVTLPDG-IDSKKMLERAIKKGVAYVPGEAFYA 411 (448)
T ss_dssp HHHHHHHHHHHHHHCCTTCE-ECCCS----------------BSSEEEEECSTT-CCHHHHHHHHHHTTEECEEGGGGST
T ss_pred HHHHHHHHHHHHHhCCCCeE-EeCCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCcEEEcchhhcC
Confidence 5677778888875 45 343 22232 245789988521 1233455554444666666544321
Q ss_pred ccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 341 ADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
. +..++++|||++.. ++++++...+.|.
T Consensus 412 ~-------------------~~~~~~iRls~~~~-~~e~i~~~~~~L~ 439 (448)
T 3aow_A 412 H-------------------RDVKNTMRLNFTYV-DEDKIMEGIKRLA 439 (448)
T ss_dssp T-------------------CCCCSEEEEECSSS-CTHHHHHHHHHHH
T ss_pred C-------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHH
Confidence 1 01258999999875 3333444444443
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=250.46 Aligned_cols=318 Identities=16% Similarity=0.176 Sum_probs=212.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CC---Cc-EEEeccHHH-HH-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EA---KH-GLCYSSGLG-AV-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~---~~-~i~~~~G~~-al-~~~ 90 (393)
+.+| +.+.+++.+++.+.+++.+.+.. ...|+. ..+..++|+++|+++ |. ++ .+++++|++ ++ .++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~ 108 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP--MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 108 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC--TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHH
Confidence 4566 66666766666665554332211 223332 235788999999985 53 25 677777765 47 667
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
..++++||+|++++|+|++ +...++..|.+++.++.+ |++++++.+.+++++|++++|+||||.++|
T Consensus 109 ~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 184 (386)
T 1u08_A 109 TALVRNGDEVICFDPSYDS----YAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQAD 184 (386)
T ss_dssp HHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HHhCCCCCEEEEeCCCchh----HHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHH
Confidence 7778999999999999996 455677889999988763 789999999888999999999999999997
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
+++|.++|+++ |+++|+||+|+.+.+.. ++ ..++++++.|+||++ |++|+|+||++++ +++++.++..
T Consensus 185 l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~~~ 261 (386)
T 1u08_A 185 FAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAP-APISAEIRKV 261 (386)
T ss_dssp HHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECC-HHHHHHHHHH
T ss_pred HHHHHHHHHHc-CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhc-CCcccceEEEEcC-HHHHHHHHHH
Confidence 68899999999 99999999999754321 11 135789999999999 6899999999997 8888888766
Q ss_pred HHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
........+...+..+...++ .+...+++..++.+.+.+.|+++ ++. +..+. .+.+++
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~ 323 (386)
T 1u08_A 262 HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLE-ILPCE----------------GTYFLL 323 (386)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCE-ECCCC----------------BSSEEE
T ss_pred HHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------ceEEEE
Confidence 554334444544443333332 13344555666777777777654 332 21121 145788
Q ss_pred EEEcCCH-HHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 309 FYVNGGA-EETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 309 ~~~~~~~-~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
+.+++.. .....+.+.+. ..++.+..|..+... + ..++++|+|++. ++++++.+.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~-----------------~~~~~iRis~~~--~~~~i~~~~~~ 382 (386)
T 1u08_A 324 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD--P-----------------FPHKLIRLCFAK--KESTLLAAAER 382 (386)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS--C-----------------CCSCEEEEECCS--CHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCC--C-----------------CCCCEEEEEEcC--CHHHHHHHHHH
Confidence 8885210 12334444332 335555554432210 0 125799999984 56656665555
Q ss_pred HH
Q psy12791 387 LR 388 (393)
Q Consensus 387 l~ 388 (393)
|+
T Consensus 383 l~ 384 (386)
T 1u08_A 383 LR 384 (386)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=250.56 Aligned_cols=319 Identities=16% Similarity=0.144 Sum_probs=212.2
Q ss_pred CCCCC-CCCCC---CCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh------CCC-cEEEeccHHH-HH-
Q psy12791 22 DQWRS-QCVIP---PIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE------EAK-HGLCYSSGLG-AV- 87 (393)
Q Consensus 22 ~~~~~-~~~~~---p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~------~~~-~~i~~~~G~~-al- 87 (393)
.+.+| +.+.+ ++.+++.+.+++.+.+... ...|+. .+..++|+++|+++ +.+ +.+++++|++ ++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~ 115 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG--HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQ 115 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT--CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcC--CCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHH
Confidence 35566 55555 5555555554432221111 112333 45688999999987 333 5677777755 57
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
.++..++++||+|++++|+|++ +...++..|++++.++.+ |++++++.+++++++|++++|+||||.++
T Consensus 116 ~~~~~l~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~ 191 (406)
T 1xi9_A 116 LIFGALLDPGDEILVPGPSYPP----YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALY 191 (406)
T ss_dssp HHHHHHCCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHhCCCCCEEEEcCCCCcc----HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCc
Confidence 6677778999999999999985 556677889999888763 78999999988899999999999999999
Q ss_pred C---HHHHHHHHHhCCCcEEEEeCccCcccccC-CCC-----CcC-cEEEEcccccccCCCCceEEEEE--ecCh----H
Q psy12791 161 D---VKAISAVVKQHPDILLVLDNTFLTAYYQK-SLP-----WGV-DIVLYSLTKYMNGHSDVVMGATV--TNDD----S 224 (393)
Q Consensus 161 ~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~-----~~~-di~~~S~sK~~~G~~G~r~G~~~--~~~~----~ 224 (393)
| +++|.++|+++ |+++|+||+|+.+.+.. +.. .++ +++++|+||++ |++|+|+||++ ++ + +
T Consensus 192 ~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~~~ 268 (406)
T 1xi9_A 192 DKKTLEEILNIAGEY-EIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDP-ENKLSE 268 (406)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECT-TCTTHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEcCccccccCCCCCCHHHcCCCceEEEEecccccc-CCCccEEEEEEEecC-chhHHH
Confidence 7 88999999999 99999999999865421 111 256 89999999999 68999999999 76 6 8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc---C-CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc
Q psy12791 225 LQARLKFLQNSMGVVPSPFDCWLVTRGL---K-TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300 (393)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~ 300 (393)
+++.+....... ...++..+..+...+ . .+...+++..++.+.+.+.|+++|++.. ..+.
T Consensus 269 l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~-------------- 332 (406)
T 1xi9_A 269 VREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQ-------------- 332 (406)
T ss_dssp HHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCC--------------
T ss_pred HHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCee-ecCC--------------
Confidence 888887665543 334444444333333 1 2444556667777888888887665431 1111
Q ss_pred CCCcceEEEEEcCC-HHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH
Q psy12791 301 SGTSGMLSFYVNGG-AEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378 (393)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~ 378 (393)
.+.++++.++.. ......+.+.+. ..++.+..|..+.. ..++++|+|++ ++++
T Consensus 333 --~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~lRis~~--~~~~ 387 (406)
T 1xi9_A 333 --GAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---------------------YGAGHFRAVFL--PPIE 387 (406)
T ss_dssp --BSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTBEEEECC--SCHH
T ss_pred --eeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---------------------CCCCEEEEEec--CCHH
Confidence 123456677420 112334444442 34555555443311 01579999998 5555
Q ss_pred HHHHHHHHHHHh
Q psy12791 379 LIADLDQALRKA 390 (393)
Q Consensus 379 ~i~~l~~al~~~ 390 (393)
+++.+.+.|.++
T Consensus 388 ~i~~~~~~l~~~ 399 (406)
T 1xi9_A 388 ILEEAMDRFEKF 399 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566555555543
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=247.09 Aligned_cols=316 Identities=13% Similarity=0.112 Sum_probs=211.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHH-HHHHHHHHh----C--CC-cEEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRN-LERCIASLE----E--AK-HGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~-lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~ 89 (393)
.+++| +.+.+++++++.+.+++.+.+.. ...| +.+ ..+ +|+++|+++ | .+ +.|++++|+++ + .+
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y---~~~-~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~ 103 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHGVFGY---SRW-KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL 103 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCC---CCS-CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCC---CCC-ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHH
Confidence 35677 77777777777666655433221 2233 334 566 899998876 4 33 67777777665 7 67
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC--------CCHHHHHhhcCC-CCcEEEEecCCCCccccc
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--------RKIENLIKYIKP-NTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--------~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~ 160 (393)
+..++++||+|+++.|+|++ +...++..|.+++.++. .|++++++.+.+ ++++|++++|+||||.++
T Consensus 104 ~~~l~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~ 179 (390)
T 1d2f_A 104 IRQWSETGEGVVIHTPAYDA----FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVW 179 (390)
T ss_dssp HHHSSCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCC
T ss_pred HHHhcCCCCEEEEcCCCcHH----HHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCc
Confidence 77788899999999999985 55667788999988876 278999999876 789999999999999999
Q ss_pred C---HHHHHHHHHhCCCcEEEEeCccCcccccC--CCC---C--cC-cEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 161 D---VKAISAVVKQHPDILLVLDNTFLTAYYQK--SLP---W--GV-DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 161 ~---~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~---~--~~-di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
| +++|.++|+++ |+++|+||+|+.+.... ... . +. |. +.|+||++ |++|+|+||++++++++.+.+
T Consensus 180 ~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~ 256 (390)
T 1d2f_A 180 TCDELEIMADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRDAY 256 (390)
T ss_dssp CTTHHHHHHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHHHH
Confidence 8 88999999999 99999999999865421 111 1 11 66 99999999 689999999998767888888
Q ss_pred HHHHH-hcC-CCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 230 KFLQN-SMG-VVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 230 ~~~~~-~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
+.... ... +..++..+..+...++ .+...++...++.+.+.+.|++ +|++.. ..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~---------------- 319 (390)
T 1d2f_A 257 LSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW-QIPQ---------------- 319 (390)
T ss_dssp HHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCS----------------
T ss_pred HHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE-ecCC----------------
Confidence 76554 222 2455555444333332 2334455566777788888876 565431 1111
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~ 381 (393)
.+.++++.+++.......+.+.+. ..++.+..|..+.. ..++++|+|++.. ++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~~--~~~l~ 376 (390)
T 1d2f_A 320 STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE---------------------EGRGFVRLNAGCP--RSKLE 376 (390)
T ss_dssp BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG---------------------GGTTEEEEECCSC--HHHHH
T ss_pred ccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC---------------------CCCCeEEEEecCC--HHHHH
Confidence 123457887421012344555554 44666666544321 0157999999974 34444
Q ss_pred HHHHHHH
Q psy12791 382 DLDQALR 388 (393)
Q Consensus 382 ~l~~al~ 388 (393)
...+.|.
T Consensus 377 ~~l~~l~ 383 (390)
T 1d2f_A 377 KGVAGLI 383 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=246.90 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=210.2
Q ss_pred CCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhC-----CC-cEEEeccHHH-HH-HHHHHhcCCCCeEEE
Q psy12791 32 PIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEE-----AK-HGLCYSSGLG-AV-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~-----~~-~~i~~~~G~~-al-~~~~~~~~~gd~vl~ 102 (393)
++.+++.+.+++.+.+.. ..+..| +..+..++|+++|++++ .+ +.+++++|++ ++ .++..++++||+|++
T Consensus 69 ~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~ 147 (427)
T 3dyd_A 69 NLPTDPEVTQAMKDALDS-GKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILV 147 (427)
T ss_dssp SSCCCHHHHHHHHHHHHH-CCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHhc-CcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEE
Confidence 455666666554332211 112234 34678899999999998 33 5666666655 57 777778899999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhC
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQH 172 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~ 172 (393)
+.|+|.+ +...++..|++++.++.+ |++++++.+++++++|++++|+||||.++| +++|.++|+++
T Consensus 148 ~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~ 223 (427)
T 3dyd_A 148 PRPGFSL----YKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ 223 (427)
T ss_dssp EESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred cCCCchh----HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 9999984 667788899999988763 799999999888999999999999999999 99999999999
Q ss_pred CCcEEEEeCccCcccccC----CC-CCc---CcEEEEcccccccCCCCceEEEEEecC------hHHHHHHHHHHHhcCC
Q psy12791 173 PDILLVLDNTFLTAYYQK----SL-PWG---VDIVLYSLTKYMNGHSDVVMGATVTND------DSLQARLKFLQNSMGV 238 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~----~~-~~~---~di~~~S~sK~~~G~~G~r~G~~~~~~------~~~~~~~~~~~~~~~~ 238 (393)
|+++|+||+|..+.+.. ++ ..+ ..++++|+||.+ |++|+|+||+++++ +++.+.+....... .
T Consensus 224 -~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~ 300 (427)
T 3dyd_A 224 -CVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRI-L 300 (427)
T ss_dssp -TCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHH-C
T ss_pred -CCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhcc-C
Confidence 99999999999865321 11 112 248899999999 69999999999975 36777666544332 3
Q ss_pred CCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 239 VPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
..++..+..+...++ .+...+++..++++.+.+.|+++|++. +..|. .+.++++.+..
T Consensus 301 ~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~p~----------------~g~~~~~~l~~ 363 (427)
T 3dyd_A 301 GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR-PVRPS----------------GAMYLMVGIEM 363 (427)
T ss_dssp CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCS----------------BTTEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCC----------------eeEEEEEecCH
Confidence 344555444443332 244566677778888899998887764 33333 24567777741
Q ss_pred C----HHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 314 G----AEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 314 ~----~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
. ......+.+.+ +..++.+..|+.+. .++++|+|++ .+++.++.+.+.|.
T Consensus 364 ~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----------------------~~~~iRis~~--~~~e~i~~~l~~l~ 418 (427)
T 3dyd_A 364 EHFPEFENDVEFTERLVAEQSVHCLPATCFE-----------------------YPNFIRVVIT--VPEVMMLEACSRIQ 418 (427)
T ss_dssp GGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEESC--SCHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----------------------CCCeEEEEEC--CCHHHHHHHHHHHH
Confidence 0 01223333333 23355555544321 1579999997 45555555555554
Q ss_pred Hh
Q psy12791 389 KA 390 (393)
Q Consensus 389 ~~ 390 (393)
++
T Consensus 419 ~~ 420 (427)
T 3dyd_A 419 EF 420 (427)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=248.91 Aligned_cols=326 Identities=14% Similarity=0.111 Sum_probs=221.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCC-chHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNN-PTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~-~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~ 89 (393)
+++| +.+.+++++++.+.+++.+.+.. ......|+. .+..++|+++|+++ |. ++ .+++++|+++ + .+
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 117 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 117 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence 5667 67777777666666554332221 012233433 35788999999986 63 25 7888888665 7 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC---------------CCHHHHHhhcCCCCcEEEEecCCC
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL---------------RKIENLIKYIKPNTKMVWIENPTN 154 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~---------------~d~~~l~~~l~~~~~~v~l~~p~n 154 (393)
+..++++||+|+++.|+|++ +...++..|.+++.++. .|++++++.+.+++++|++++|+|
T Consensus 118 ~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~n 193 (429)
T 1yiz_A 118 IQGHVDEGDEVIIIEPFFDC----YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 193 (429)
T ss_dssp HHHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred HHHhcCCCCEEEEcCCCchh----HHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCC
Confidence 77778999999999999996 45556778999888865 268999999988899999999999
Q ss_pred CcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----C---C--CCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 155 PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK----S---L--PWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 155 ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~----~---~--~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
|||.++| +++|.++|+++ |+++|+||+|+.+.+.. + + ..++++++.|+||++ |++|+|+||++++
T Consensus 194 ptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~- 270 (429)
T 1yiz_A 194 PLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGP- 270 (429)
T ss_dssp TTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEEESC-
T ss_pred CCCccCCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc-CCCCcceEEEEeC-
Confidence 9999996 88999999999 99999999999754311 1 1 246789999999999 6899999999997
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHhcc----------CC-HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCc
Q psy12791 223 DSLQARLKFLQNSMGVVPSPFDCWLVTRGL----------KT-LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291 (393)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~ 291 (393)
+++++.+...........++..+..+...+ +. +...++...++.+.+.+.|+++ ++. +..+.
T Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----- 343 (429)
T 1yiz_A 271 EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN-PTVPQ----- 343 (429)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCE-EEECS-----
T ss_pred HHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCC-----
Confidence 888888876654333344444443322222 22 4445566667777888888765 333 22222
Q ss_pred chHHHhhhcCCCcceEEEEEcCCH-----------HHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 292 NHELAKSQWSGTSGMLSFYVNGGA-----------EETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
.+.++++.+++.. .....+.+.+. ..++.+..|..+.....
T Consensus 344 -----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~---------------- 396 (429)
T 1yiz_A 344 -----------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN---------------- 396 (429)
T ss_dssp -----------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGG----------------
T ss_pred -----------cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcc----------------
Confidence 1457888885320 13445555442 44666665544321100
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+..++++|||++. ++++++.+.+.|.++.
T Consensus 397 ~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 397 KHLGEDFVRYCFFK--KDENLQKAAEILRKWK 426 (429)
T ss_dssp GGGTTTEEEEECCS--CHHHHHHHHHHHHHHS
T ss_pred cCCCCCeEEEEecC--CHHHHHHHHHHHHHhc
Confidence 00125799999984 6777777777777654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=250.83 Aligned_cols=326 Identities=13% Similarity=0.122 Sum_probs=218.2
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHh----CC--C-cEEEeccHHH-HH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLE----EA--K-HGLCYSSGLG-AV-TAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~----~~--~-~~i~~~~G~~-al-~~~ 90 (393)
.+++| +...+++.+++.+.+++.+.+.. .....|+. .+..+||+++|+++ |. + +.|++++|++ ++ .++
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~ 135 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKALDI-PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCL 135 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTS-GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhC-cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence 35667 66666666665555554433222 11223433 36789999999986 32 2 5678888866 47 777
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC-----------------CCHHHHHhhcCCCCcEEEEecCC
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL-----------------RKIENLIKYIKPNTKMVWIENPT 153 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~-----------------~d~~~l~~~l~~~~~~v~l~~p~ 153 (393)
..++++||+|++++|+|++ +...++..|.+++.++. .|++++++.+.+++++|++++|+
T Consensus 136 ~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~ 211 (447)
T 3b46_A 136 MGLLNAGDEVIVFEPFFDQ----YIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPH 211 (447)
T ss_dssp HHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSC
T ss_pred HHHcCCCCEEEEeCCCchh----HHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCC
Confidence 7888999999999999996 55667788999887763 26899999998889999999999
Q ss_pred CCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC---C---C---CCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 154 NPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---S---L---PWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 154 nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---~---~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
||||.+++ +++|.++|+++ |+++|+||+|..+.+.. + + ..++++++.|+||++ |++|+|+||++++
T Consensus 212 nptG~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG~~~~~ 289 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIGWVLSL 289 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCEEEECS
T ss_pred CCCCcccCHHHHHHHHHHHHHc-CcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhEEEEeC
Confidence 99999986 88899999999 99999999999755421 1 1 125789999999999 6899999999993
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHH
Q psy12791 222 DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295 (393)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~ 295 (393)
++++++.+...........+...+..+...++. +...++++.++++.+.+.|+++ ++. +..|.
T Consensus 290 ~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--------- 358 (447)
T 3b46_A 290 NAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLP-YTAPE--------- 358 (447)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCC-EECCS---------
T ss_pred CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC---------
Confidence 388888887655433334445444443333322 3345556667777788888765 333 22222
Q ss_pred HhhhcCCCcceEEEEEcCC--------------HHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhc
Q psy12791 296 AKSQWSGTSGMLSFYVNGG--------------AEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360 (393)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~ 360 (393)
.+.++++.++.. ......+.+.+. ..++.+.+|+.+......
T Consensus 359 -------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~---------------- 415 (447)
T 3b46_A 359 -------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHE---------------- 415 (447)
T ss_dssp -------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGG----------------
T ss_pred -------eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCcc----------------
Confidence 245678887421 123345555443 346666666544211000
Q ss_pred CCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 361 g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+..++++|||++. ++++++...+.|.++
T Consensus 416 ~~~~~~iRls~~~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 416 KAAENLLRFAVCK--DDAYLENAVERLKLL 443 (447)
T ss_dssp GGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred CCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence 0115899999985 455566655555543
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=244.16 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=214.9
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+|++.||+++|.++++++++|++++ .++..++++||.|+++.++|.+ +...++..|.+++.++..|++++
T Consensus 108 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~----~~~~~~~~g~~~~~~~~~d~~~l 183 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHAS----IYDGCQQGNAEIVRFRHNSVEDL 183 (427)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHH----HHHHHHHSCSEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHH----HHHHHHHcCCeeEEeCCCCHHHH
Confidence 467789999999999999999999999997 7777788999999999999985 44556778999999998899999
Q ss_pred HhhcCC----CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---------CCCCCcCcEEEEcc
Q psy12791 137 IKYIKP----NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---------KSLPWGVDIVLYSL 203 (393)
Q Consensus 137 ~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---------~~~~~~~di~~~S~ 203 (393)
++.+.+ ++++|++++++||||.+.|+++|.++|+++ |+++|+||+|+.+... ..+..+.|+++.|+
T Consensus 184 e~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~ 262 (427)
T 2w8t_A 184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKH-GAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262 (427)
T ss_dssp HHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHT-TCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred HHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHc-CCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecc
Confidence 998865 789999999999999999999999999999 9999999999986543 11223569999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHH-H-HhcCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFL-Q-NSMGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
||++ |++| ||++++ +++++.+... . ..++...++.....+...+ +.....+++..++.+.+.+.|++. +
T Consensus 263 sK~~-g~~g---G~v~~~-~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 336 (427)
T 2w8t_A 263 SKSV-GTVG---GFVVSN-HPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-G 336 (427)
T ss_dssp SSTT-CSCC---EEEEEC-CTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred hhhh-ccCC---CEEEeC-HHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9999 5665 999997 6777766543 1 2234455665554443333 334567777888888888888765 3
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
+. +..+. ..++++++.++ +......+.+.|...++.+..+..++..
T Consensus 337 ~~-~~~~~---------------~~~~~~~~~~~-~~~~~~~l~~~L~~~Gi~v~~~~~~~~~----------------- 382 (427)
T 2w8t_A 337 FR-LGTET---------------CDSAIVAVMLE-DQEQAAMMWQALLDGGLYVNMARPPATP----------------- 382 (427)
T ss_dssp CE-ESCSS---------------CCSSEEEEEES-SHHHHHHHHHHHHHTTEECEEECTTTSC-----------------
T ss_pred Cc-ccCCC---------------CCCCEEEEEEC-CHHHHHHHHHHHHHCCeEEeeeCCCCCC-----------------
Confidence 22 21011 02578999994 5556667777776556665554322110
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+++|++++..+++++++.+.++|+++.
T Consensus 383 ---~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 383 ---AGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp ---TTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 124799999999888888888888887653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=246.30 Aligned_cols=319 Identities=18% Similarity=0.207 Sum_probs=215.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC-chHHHHHHHHHHHhC------CC-cEEEeccHHH-HH-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN-PTRRNLERCIASLEE------AK-HGLCYSSGLG-AV-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~lr~~la~~~~------~~-~~i~~~~G~~-al-~~~~ 91 (393)
+++| +++.+++.+++.+.+++ +.+... ...|+. .+..++|+++|++++ .+ +.+++++|++ ++ .++.
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~~l~~~--~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~ 120 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-YENKPE--VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFA 120 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-HHTCCS--SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHH-HHHhcC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHH
Confidence 4566 67777776666666655 443221 122333 457899999999874 22 5666666655 57 6777
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCC------HHHHHhhcCCCCcEEEEecCCCCcccccC---H
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK------IENLIKYIKPNTKMVWIENPTNPLMTVFD---V 162 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d------~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~ 162 (393)
.++++||+|++++|+|++ +...++..|.+++.++.++ ++++++.+.+++++|++++|+||||.++| +
T Consensus 121 ~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 196 (409)
T 2gb3_A 121 VIANPGDEILVLEPFYAN----YNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEM 196 (409)
T ss_dssp HHCCTTCEEEEEESCCTH----HHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred HhCCCCCEEEEcCCCchh----HHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHH
Confidence 778999999999999985 5556677899999988752 67888888888999999999999999986 7
Q ss_pred HHHHHHHHhCCCcEEEEeCccCcccccC---C-CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 163 KAISAVVKQHPDILLVLDNTFLTAYYQK---S-LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 163 ~~l~~l~~~~~~~~livDea~~~~~~~~---~-~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
++|.++|+++ |+++|+||+|+.+.... + +. .++|+++.|+||++ |++|+|+||++++++++.+.++.....+
T Consensus 197 ~~i~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~~~~~~~ 274 (409)
T 2gb3_A 197 RYLVEIAERH-GLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLAQGR 274 (409)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-CCEEEEECcccccccCCCCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHHHHHhcc
Confidence 8999999999 99999999999865321 1 11 25789999999999 6899999999998448888887766655
Q ss_pred CCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 237 GVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
. ..++..+..+...++. +...+++..++.+.+.+.|+++ ++..+..|. .+.++++.++
T Consensus 275 ~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----------------~~~~~~~~~~ 336 (409)
T 2gb3_A 275 L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPS----------------GAFYITAELP 336 (409)
T ss_dssp C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCS----------------BSSEEEEECS
T ss_pred C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCC----------------eeEEEEEEeC
Confidence 4 5566666555555533 3334555667777788888765 332101111 1345677774
Q ss_pred CCHHHHHHHHHhcCcc------ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 313 GGAEETRIFLESLLIF------RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 313 ~~~~~~~~~~~~l~~~------~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
+ .....+.+.+... ++.+..|..+... + +..++++|++++ .++++++.+.++
T Consensus 337 ~--~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--~----------------~~~~~~iRis~~--~~~e~i~~~~~~ 394 (409)
T 2gb3_A 337 V--EDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--P----------------GLGKKEIRIACV--LEKDLLSRAIDV 394 (409)
T ss_dssp S--SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--T----------------TTTSSEEEEECC--SCHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHhccccccCcEEEeCchHhCCC--C----------------CCCCCEEEEEeC--CCHHHHHHHHHH
Confidence 2 1223344444322 5555554332110 0 112689999998 566666666655
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
|+++
T Consensus 395 l~~~ 398 (409)
T 2gb3_A 395 LMEG 398 (409)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=251.33 Aligned_cols=323 Identities=17% Similarity=0.134 Sum_probs=220.3
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHhC--CC-cEEEeccHHH-HH-HHHHHhcC
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLEE--AK-HGLCYSSGLG-AV-TAVTHLLS 95 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~~--~~-~~i~~~~G~~-al-~~~~~~~~ 95 (393)
+++| +...+++.+++.+.+++.+.+. ..+.|+....+..+++++.+++.++ .+ +.|++++|++ ++ .++..+++
T Consensus 62 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~ 141 (421)
T 3l8a_A 62 ELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE 141 (421)
T ss_dssp TCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC
T ss_pred CeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC
Confidence 5567 6666777777777665544321 2355665444555566666666667 33 6677777766 57 77777889
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcC-CCCcEEEEecCCCCcccccC---HH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIK-PNTKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~---~~ 163 (393)
+||+|+++.|+|++ +...++..|.+++.+|.+ |++++++++. +++++|++++|+||||.+++ ++
T Consensus 142 ~gd~Vi~~~~~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 142 KGDAVLINSPVYYP----FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp TEEEEEEEESCCHH----HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CCCEEEECCCCcHH----HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 99999999999986 555667789999988864 8999999997 78999999999999999965 88
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccC----C---C--C-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQK----S---L--P-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~----~---~--~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+|.++|+++ |+++|+||+|+.+.... + + + .+.++++.|+||++ |++|+|+||++++++++.+.+....
T Consensus 218 ~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~l~~~~~~~~ 295 (421)
T 3l8a_A 218 KIAELCKKH-GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNESLRRKFQYRQ 295 (421)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHHHHHHHHHHH
Confidence 899999999 99999999998754321 1 1 1 24569999999999 6899999999998788888887665
Q ss_pred HhcCC-CCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 234 NSMGV-VPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 234 ~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
...+. ..++..+..+...++ .+....+...++.+.+.+.|+++|.+..+ .+. .+.++|
T Consensus 296 ~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~-~~~----------------~~~~~~ 358 (421)
T 3l8a_A 296 LANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVM-EPE----------------GTYLVW 358 (421)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEE-CCS----------------BSSEEE
T ss_pred HhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEe-CCC----------------eeEEEE
Confidence 43332 455555444433332 24445666677788888888876665432 222 123456
Q ss_pred EEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.++........+.+.+ +..++.+..|..+.. ..++++||+++ .++++++...+.|
T Consensus 359 v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~--~~~~~i~~~l~~l 415 (421)
T 3l8a_A 359 LDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---------------------EGKYFARLNVA--TPKNTVQEALSRI 415 (421)
T ss_dssp EECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---------------------GGTTEEEEECC--SCHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHhCCEEEECchhhCC---------------------CCCCEEEEEec--CCHHHHHHHHHHH
Confidence 87742111223344444 233555555544321 12689999998 4666677777776
Q ss_pred HHhh
Q psy12791 388 RKAC 391 (393)
Q Consensus 388 ~~~~ 391 (393)
+++.
T Consensus 416 ~~~l 419 (421)
T 3l8a_A 416 ISVF 419 (421)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=240.70 Aligned_cols=300 Identities=14% Similarity=0.143 Sum_probs=209.6
Q ss_pred CCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC---CC-cEEEeccHHHH-H-HHH
Q psy12791 18 GSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE---AK-HGLCYSSGLGA-V-TAV 90 (393)
Q Consensus 18 g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~---~~-~~i~~~~G~~a-l-~~~ 90 (393)
|..+.+++| +++.+|+++++.+.+++.+.+.. .....|+++...++|+++|++++ .+ +++++++|+++ + .++
T Consensus 15 ~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 15 ETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-DALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCCCCCSEEESSCCCSSCCCHHHHHHHHHTCCG-GGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CCCCCcceECCCCCCCCCCCHHHHHHHHHHhhh-hhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 433456778 88888887777777665544311 22344555668899999999999 54 67888888665 6 444
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHH
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAI 165 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 165 (393)
..+ ||+|+++ |+|++ +...++..|.+++.++.+ |++++ +++++|++++||||||.++|.+++
T Consensus 94 ~~~---gd~Vl~~-p~y~~----~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l 160 (335)
T 1uu1_A 94 LMF---DRSVFFP-PTYSC----YRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEI 160 (335)
T ss_dssp HHS---SEEEECS-SSCHH----HHHHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHH
T ss_pred HHh---CCcEEEC-CCcHH----HHHHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHH
Confidence 444 8999999 99985 556677789999999874 33333 578999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccCCC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCC
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQKSL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPS 241 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
.++++.+ | ++|+||+|+.+...... ..+++++++|+||++ |++|+|+||++++ +++.+.++.....+ ..+
T Consensus 161 ~~l~~~~-~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~l~~~~~~~--~~~ 234 (335)
T 1uu1_A 161 ERILKTG-A-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVAS-EKFIDAYNRVRLPF--NVS 234 (335)
T ss_dssp HHHHHTT-C-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTT-TCGGGCCEEEEEC-HHHHHHHHHHSCTT--CSC
T ss_pred HHHHHhC-C-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhc-CCcccCeEEEEeC-HHHHHHHHHhcCCC--CcC
Confidence 9999999 9 99999999865432111 135689999999999 6899999999996 88888877654332 455
Q ss_pred HHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 242 PFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
+..+..+...++. +...+++..++++.+.+.|+++ ++. + .|. .+.++++.++ . ...
T Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----------------~~~~~~~~~~-~-~~~ 293 (335)
T 1uu1_A 235 YVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYR-I-TDS----------------RGNFVFVFME-K-EEK 293 (335)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCC----------------CSSEEEEECC-T-HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCC----------------CCeEEEEECC-C-CCH
Confidence 5555555544443 3445566667777888888764 322 1 122 2467888884 3 344
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..+.+.+...++.+.. .++++|+|++. +++++.+.++|++
T Consensus 294 ~~~~~~l~~~gi~v~~----------------------------~~~~iRis~~~---~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 294 ERLLEHLRTKNVAVRS----------------------------FREGVRITIGK---REENDMILRELEV 333 (335)
T ss_dssp HHHHHHHHHHTEEEEE----------------------------ETTEEEEECCC---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEEE----------------------------CCCeEEEEeCC---HHHHHHHHHHHHh
Confidence 4555555443444322 05789999964 3557777777664
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=235.71 Aligned_cols=319 Identities=12% Similarity=0.113 Sum_probs=223.1
Q ss_pred CCCCC-CCCCC-CCccCCeeeeCCCCCCCC-Ccccc-----CCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCVIP-PIILSTTFKQNTPGQPPQ-GFEYS-----RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~~~-p~~~~~~~~~~~~~~~~~-~~~y~-----~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~ 92 (393)
.+++| +++.+ ++.+++.+.+++.+.+.. ...|. ....+..+++++.+++++|.++.+++++|++++ .++..
T Consensus 43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~ 122 (398)
T 3a2b_A 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSC 122 (398)
T ss_dssp EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHH
T ss_pred ceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH
Confidence 35667 66655 444555555543322110 11121 112466788999999999987767777777778 77778
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCC----CCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKP----NTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~----~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
++++||.|+++.|+|++ +...++..|.+++.++..|++++++.+.+ ++++|++++|+||||.++|+++|.++
T Consensus 123 ~~~~gd~V~~~~p~~~~----~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~ 198 (398)
T 3a2b_A 123 LMGRNDYILLDERDHAS----IIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSI 198 (398)
T ss_dssp SSCTTCEEEEETTCCHH----HHHHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred HhCCCCEEEECCccCHH----HHHHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHH
Confidence 88999999999999985 55667788999999998899999998876 78999999999999999999999999
Q ss_pred HHhCCCcEEEEeCccCccccc---CCC-C-C----cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-H-HhcC
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQ---KSL-P-W----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-Q-NSMG 237 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~---~~~-~-~----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-~-~~~~ 237 (393)
|+++ |+++|+||+|+.+.+. .+. . . +.|++++|+||++ |++| ||++++ +++++.++.. . ....
T Consensus 199 ~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~G---G~~~~~-~~~~~~l~~~~~~~~~~ 272 (398)
T 3a2b_A 199 ANEF-DAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLG---GFVAGD-ADVIDFLKHNARSVMFS 272 (398)
T ss_dssp HHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSC---EEEEEC-HHHHHHHHHHCHHHHSS
T ss_pred HHHc-CcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc-cCCC---cEEEeC-HHHHHHHHHhcccceec
Confidence 9999 9999999999876431 111 1 1 2489999999999 5777 999997 8888888664 2 2333
Q ss_pred CCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 238 VVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
...++.+...+...++.. ...+++..++.+.+.+.|++. ++. +..+ .+.++++.++ +
T Consensus 273 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----------------~g~~~~~~~~-~ 332 (398)
T 3a2b_A 273 ASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFD-LGAT-----------------ESPILPIFIR-S 332 (398)
T ss_dssp BCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCC-BCSC-----------------CSSEEEEECC-C
T ss_pred CCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCC-cCCC-----------------CCCEEEEEcC-C
Confidence 445555543333333222 245666677778888888765 322 1111 2578888884 4
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.+...++.+..|..+... ..++++|+|++...++++++.+.++|+++
T Consensus 333 ~~~~~~l~~~l~~~gi~v~~~~~~~~~--------------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 333 NEKTFWVTKMLQDDGVFVNPVVSPAVP--------------------AEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp HHHHHHHHHHHHHTTEECEEECTTTSC--------------------GGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcEEEeeCCCCCC--------------------CCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 445566666665546666655433210 01589999999988888888888877755
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=241.37 Aligned_cols=291 Identities=13% Similarity=0.059 Sum_probs=202.7
Q ss_pred cCCCC-chHHHHHHHHHHHhCCC-cEEEeccHHHH-H---HHHHHhcC--C----------CCeEEEcCCCccchHHHHH
Q psy12791 54 SRSNN-PTRRNLERCIASLEEAK-HGLCYSSGLGA-V---TAVTHLLS--A----------GDHIISGDDVYGGTYRYFA 115 (393)
Q Consensus 54 ~~~~~-~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l---~~~~~~~~--~----------gd~vl~~~~~y~~~~~~~~ 115 (393)
..|++ .+..+||+++|++++++ ++|++|+|+++ + .++..++. + ||+|++++|+|.+ +.
T Consensus 72 ~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~----~~ 147 (427)
T 3ppl_A 72 RNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDR----HF 147 (427)
T ss_dssp TSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH----HH
T ss_pred cCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHH----HH
Confidence 34443 57889999999999987 78999999876 6 24445566 6 8999999999985 66
Q ss_pred HhcccCCcEEEeeCCC----CHHHHHhhcC-CCCcEEEEe-cCCCCcccccCHH---HHHHHH-HhCCCcEEEEeCccCc
Q psy12791 116 QVAPKIGLEVDFVDLR----KIENLIKYIK-PNTKMVWIE-NPTNPLMTVFDVK---AISAVV-KQHPDILLVLDNTFLT 185 (393)
Q Consensus 116 ~~~~~~g~~v~~~~~~----d~~~l~~~l~-~~~~~v~l~-~p~nptG~~~~~~---~l~~l~-~~~~~~~livDea~~~ 185 (393)
..++..|++++.++.+ |++++++++. +++++|+++ +||||||.++|.+ +|.++| +++ |+++|+||+|+.
T Consensus 148 ~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~ 226 (427)
T 3ppl_A 148 SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAV 226 (427)
T ss_dssp HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTT
T ss_pred HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcc
Confidence 7778899999999875 8999999994 578999875 8999999999966 888888 899 999999999997
Q ss_pred ccccC----CC----------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 186 AYYQK----SL----------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 186 ~~~~~----~~----------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
+.+.. +. ..+++++++||||++ .+|+|+||++++ +++++.+...........+...+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~--~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 303 (427)
T 3ppl_A 227 HTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT--LAGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARY 303 (427)
T ss_dssp CBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS--CTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred cccCCCCCCccchhhhhhccCCCCcEEEEechhhcc--CcCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHH
Confidence 44321 11 235679999999994 679999999997 88999888777666666777776666655
Q ss_pred cCC-------HHHHHHHHHHHHHHHHHHHhh-CCCc--ceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHH
Q psy12791 252 LKT-------LPCRLKEHERGSIEVAKFLES-HPCV--KGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIF 321 (393)
Q Consensus 252 ~~~-------~~~~~~~~~~~~~~l~~~l~~-~~~~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
++. +...++.+.++.+.+.+.|.+ ++.+ ..+..|. .+.++++.+++. ..+.+
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~ 365 (427)
T 3ppl_A 304 FGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA----------------GGYFISLDVVPG--TASRV 365 (427)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS----------------BSSCEEEECSTT--CHHHH
T ss_pred HhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC----------------ccEEEEEECCcc--hHHHH
Confidence 554 222333444555566666643 2211 1122222 256789998532 24445
Q ss_pred HHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 322 LESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 322 ~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
.+.+...++.+..|+.+..... +..++++|||++.. ++++++...+.|.
T Consensus 366 ~~~l~~~gv~v~~~g~~~~~~~-----------------~~~~~~~Ris~~~~-~~~~i~~~~~~l~ 414 (427)
T 3ppl_A 366 AELAKEAGIALTGAGSSYPLRQ-----------------DPENKNLRLAPSLP-PVEELEVAMDGVA 414 (427)
T ss_dssp HHHHHHTTEECCCTTTTSGGGC-----------------CTTSCEEEECCSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEecCcCcCCCCC-----------------CCCCCeEEEECCCC-CHHHHHHHHHHHH
Confidence 5555555777777543221100 01268999999876 4444444444443
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=246.79 Aligned_cols=329 Identities=16% Similarity=0.124 Sum_probs=213.7
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CC---Cc-EEEeccHHHH-H-HHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EA---KH-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~---~~-~i~~~~G~~a-l-~~~ 90 (393)
+.+| +.+.+++.+++.+.+++.+.+.. ...|.. ..+..++|+++|+++ |. ++ .+++++|+++ + .++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPP--GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCC--TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCC--CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 4566 66777766666665554333221 223332 234678999999986 53 24 7888887664 7 667
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC--------CCHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--------RKIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--------~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
..++++||+|+++.|+|++ +...++..|.+++.++. .|++++++.+.+++++|++++|+||||.++|
T Consensus 104 ~~~~~~gd~Vl~~~~~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~ 179 (411)
T 2o0r_A 104 LGLVEPGSEVLLIEPFYDS----YSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSA 179 (411)
T ss_dssp HHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred HHhcCCCCEEEEeCCCcHh----HHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCH
Confidence 7778999999999999996 45556788999988876 2789999999888999999999999999998
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccC----CC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~----~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ |+++|+||+|+.+.+.. ++ ..++|+++.|+||++ |++|+|+||++++ +++++.+.
T Consensus 180 ~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~l~ 256 (411)
T 2o0r_A 180 TELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMF-NCTGWKIGWACGP-AELIAGVR 256 (411)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCTTTCEEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhc-CCccceEEEEeeC-HHHHHHHH
Confidence 58999999999 99999999999765321 11 135789999999999 6999999999997 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcce
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGM 306 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 306 (393)
..........++..+..+...++ .+...+++..++.+.+.+.|++. ++. +..+. .+.+
T Consensus 257 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~ 318 (411)
T 2o0r_A 257 AAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFA-VHDSY----------------GTYF 318 (411)
T ss_dssp HHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCE-ECCCC----------------BSSE
T ss_pred HHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCE-ecCCC----------------eeEE
Confidence 65543332233333222222222 23344555666777777777754 332 21121 1347
Q ss_pred EEEEEcCC-HHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 307 LSFYVNGG-AEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 307 ~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
+++.+++. ......+.+.+. ..++.+..|..++.....+ .+.. ....++++|||++. ++++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~--~~~~--------~~~~~~~iRis~~~--~~e~i~~~~ 386 (411)
T 2o0r_A 319 LCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQ--ASQQ--------ADVWNHLVRFTFCK--RDDTLDEAI 386 (411)
T ss_dssp EEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC------------------CCGGGCEEEECCS--CHHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccc--cccc--------ccCCCCeEEEEecC--CHHHHHHHH
Confidence 88888520 011234444432 3355555554431100000 0000 00125789999974 566677777
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
++|+++
T Consensus 387 ~~l~~~ 392 (411)
T 2o0r_A 387 RRLSVL 392 (411)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 777654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=244.15 Aligned_cols=316 Identities=19% Similarity=0.141 Sum_probs=208.7
Q ss_pred CCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC
Q psy12791 21 PDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD 98 (393)
Q Consensus 21 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd 98 (393)
|++++| ++|++|+ |++.+.+.+.+.......|. +++...+||+++|+++|.++.+++++|++++ .++..++++||
T Consensus 2 ~~~~i~~~~~~~~~-p~~~~~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd 78 (347)
T 1jg8_A 2 PHMMIDLRSDTVTK-PTEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGD 78 (347)
T ss_dssp ---CEECSCGGGCC-CCHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTC
T ss_pred CceEEEeccccCCC-CCHHHHHHHhcCCCCCcccC--CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCC
Confidence 567788 8899988 66666665543322222333 5688899999999999998899999999887 77777889999
Q ss_pred eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCc-ccccC---HH
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPL-MTVFD---VK 163 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~npt-G~~~~---~~ 163 (393)
+|++++|+|.+++.. ...++..|++++.+ .+ |++++++++++ ++++|++++||||| |.++| ++
T Consensus 79 ~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~ 156 (347)
T 1jg8_A 79 EVILEADSHIFWYEV-GAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK 156 (347)
T ss_dssp EEEEETTCHHHHSST-THHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred EEEEcCcchhhhccc-cchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHH
Confidence 999999999753211 12356678898888 43 89999999875 68999999999999 99998 46
Q ss_pred HHHHHHHhCCCcEEEEeCccCccc---ccCC---CCCcCcEEEEcccccccCCCCceEE-EEEecChHHHHHHHHHHHhc
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAY---YQKS---LPWGVDIVLYSLTKYMNGHSDVVMG-ATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~---~~~~---~~~~~di~~~S~sK~~~G~~G~r~G-~~~~~~~~~~~~~~~~~~~~ 236 (393)
+|.++|+++ |+++++|++|..+. ...+ +..+.|.++.|+||+++ .+ +| +++++ ++++++++.....+
T Consensus 157 ~i~~~a~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~-~~---~G~~~~~~-~~~~~~~~~~~~~~ 230 (347)
T 1jg8_A 157 EICTIAKEH-GINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLC-AP---VGSVVVGD-RDFIERARKARKML 230 (347)
T ss_dssp HHHHHHHHH-TCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTC-CS---SCEEEEEC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccC-CC---ceEEEEcC-HHHHHHHHHHHHHc
Confidence 888999999 99999999875321 1111 11246777889999995 43 45 55665 88888877665555
Q ss_pred CCCC--CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 237 GVVP--SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 237 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
+... +...+..+...++....++++..++++.+.+.|+++ ++. +..+ ...++++++.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~---------------~~~~~~~~~~~~~~ 293 (347)
T 1jg8_A 231 GGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEI-GYS-VNPE---------------DVKTNMVILRTDNL 293 (347)
T ss_dssp TCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH-TCB-CCGG---------------GCCSSEEEEECTTS
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cce-eccC---------------CCcceEEEEEcccc
Confidence 4333 333333322222111112233345667777778754 322 1110 11256788888521
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......+.+.|...++.+..++ ++++|++++...++++++.+.++|+++.
T Consensus 294 ~~~~~~~~~~l~~~gi~v~~~~---------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 294 KVNAHGFIEALRNSGVLANAVS---------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp SSCHHHHHHHHHHHTEECEEEE---------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCEEecCC---------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1123445555544444443210 3689999998888888888888887653
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=237.68 Aligned_cols=314 Identities=14% Similarity=0.108 Sum_probs=216.5
Q ss_pred CCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEEeccHHH-HH-HHHHHhcCCCCeEEEcCC
Q psy12791 30 IPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLCYSSGLG-AV-TAVTHLLSAGDHIISGDD 105 (393)
Q Consensus 30 ~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~ 105 (393)
.+|...++.+.+++.+.... .|+....+..+++++.+++++|.+ +.+++++|++ ++ .++.+++++||+|++++|
T Consensus 26 ~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~ 103 (386)
T 2dr1_A 26 AGPVACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTII 103 (386)
T ss_dssp SSSCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCcCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcC
Confidence 44545555666666554321 232212356788999999999987 6676666655 57 677777899999999999
Q ss_pred CccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhc--CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 106 VYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYI--KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 106 ~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l--~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
+|++. .+...++..|++++.++.+ |++++++.+ .+++++|++++|+||||.+.|+++|.++|+++ |+++|
T Consensus 104 ~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li 180 (386)
T 2dr1_A 104 GAFGK--RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEH-DKLVF 180 (386)
T ss_dssp SHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHT-TCEEE
T ss_pred CchhH--HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHc-CCeEE
Confidence 99853 2566677889999998873 789999988 56799999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH----------------HHH--HhcCCC
Q psy12791 179 LDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK----------------FLQ--NSMGVV 239 (393)
Q Consensus 179 vDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~----------------~~~--~~~~~~ 239 (393)
+|++|+.+....++ ..++|+++.|+||+++++.| +||++++ +++++.++ ... ......
T Consensus 181 ~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (386)
T 2dr1_A 181 VDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG--LAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPST 257 (386)
T ss_dssp EECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS--CEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSC
T ss_pred EEccccccCccccccccCCcEEEEeccccccCCCc--eEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCC
Confidence 99999976543222 24789999999999964446 8999998 77777662 111 122334
Q ss_pred CCHHHHHHHHhccC------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 240 PSPFDCWLVTRGLK------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 240 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
.+...+..+...++ .+...+++..++.+.+.+.|+++ ++. +..+. . ...+.++++.++.
T Consensus 258 ~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--~-----------~~~~~~~~~~~~~ 322 (386)
T 2dr1_A 258 PPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLD-ILAEP--G-----------HESPTITAVLTPP 322 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCT--T-----------CBCSSEEEEECCT
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCe-eCcCc--c-----------ccCCceEEEEcCC
Confidence 45544443333332 24556777778888888888875 332 11111 0 0135788888842
Q ss_pred CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 314 GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.|...++.+..|..+ ..++++|+|++...++++++.+.++|+++
T Consensus 323 -~~~~~~~~~~l~~~gi~v~~~~~~-----------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 323 -GIKGDEVYEAMRKRGFELAKGYGS-----------------------VKEKTFRIGHMGYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp -TCCHHHHHHHHHHTTEECEECCGG-----------------------GTTTEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHCCeEEecCccc-----------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 122344555554435555544311 02579999999888888888888777654
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=239.92 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=200.3
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
++..++|+++|+++|.+ +++++++|+++ + .++..++++||+|+++.|+|++ +...++..|.+++.++.+
T Consensus 74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMG----AIQAFRLQGPRFLTVPAGEEGP 149 (397)
T ss_dssp TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTCCEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHH----HHHHHHHcCCEEEecCcCCCCC
Confidence 46889999999999875 67888888775 7 6677778999999999999985 556677789999988764
Q ss_pred CHHHHHhhcCC-CCcEEE-EecCCCCcccccCHH---HHHHHHHhCCCcEEEEeCccCcccccC--CCC---C------c
Q psy12791 132 KIENLIKYIKP-NTKMVW-IENPTNPLMTVFDVK---AISAVVKQHPDILLVLDNTFLTAYYQK--SLP---W------G 195 (393)
Q Consensus 132 d~~~l~~~l~~-~~~~v~-l~~p~nptG~~~~~~---~l~~l~~~~~~~~livDea~~~~~~~~--~~~---~------~ 195 (393)
|++++++.+++ ++++|+ +++|+||||.++|.+ +|.++|+++ |+++|+||+|+.+.+.. +.. . +
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCCCCCchhhhCcccCCC
Confidence 78999988875 788885 699999999999854 899999999 99999999999865421 111 1 3
Q ss_pred CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHH
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVA 270 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ 270 (393)
.+++++|+||++ | +|+|+||++++ +++.+.++.....+....++..+..+...++. +....+++.++++.+.
T Consensus 229 ~~i~~~s~sK~~-~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 305 (397)
T 2zyj_A 229 GVIYLGSFSKVL-S-PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAML 305 (397)
T ss_dssp CEEEEEESTTTT-C-GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecccccc-c-ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 449999999999 6 99999999997 88888887655443333356665555555543 3334455566777788
Q ss_pred HHHhh-CC-CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccccc
Q psy12791 271 KFLES-HP-CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT 348 (393)
Q Consensus 271 ~~l~~-~~-~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~ 348 (393)
+.|++ +| ++. +..|. .+.++++.++. ......+.+.+...++.+..|..+...
T Consensus 306 ~~L~~~~~~g~~-~~~~~----------------~g~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~~------- 360 (397)
T 2zyj_A 306 HALDREVPKEVR-YTRPK----------------GGMFVWMELPK-GLSAEGLFRRALEENVAFVPGGPFFAN------- 360 (397)
T ss_dssp HHHHHHSCTTSE-ECCCS----------------BSSEEEEECST-TCCHHHHHHHHHHTTEEEEESGGGCTT-------
T ss_pred HHHHHHCCCCeE-EccCC----------------ccEEEEEEcCC-CCCHHHHHHHHHHCCCEEechHHhcCC-------
Confidence 88875 45 343 22222 24578888842 112334445444446666555433210
Q ss_pred CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 349 HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+..++++|+|++.. ++++++.+.++|++
T Consensus 361 ------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 388 (397)
T 2zyj_A 361 ------------GGGENTLRLSYATL-DREGIAEGVRRLGR 388 (397)
T ss_dssp ------------SCCTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred ------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 01258999999986 55555555555543
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=241.31 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=195.9
Q ss_pred CchHHHHHHHHHHHhCCC-cEEEeccHHHH-HH---HHHHhcC--C---------CCeEEEcCCCccchHHHHHHhcccC
Q psy12791 58 NPTRRNLERCIASLEEAK-HGLCYSSGLGA-VT---AVTHLLS--A---------GDHIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l~---~~~~~~~--~---------gd~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
.++..+||+++|++++.+ ++|++|+|+++ +. ++..++. + ||+|+++.|+|.+ +...++..
T Consensus 69 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~ 144 (423)
T 3ez1_A 69 VAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDR----HFLLLQTL 144 (423)
T ss_dssp TTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHH----HHHHHHHH
T ss_pred CCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHH----HHHHHHHc
Confidence 356789999999999976 78888888775 54 4455667 7 5999999999985 56667788
Q ss_pred CcEEEeeCCC----CHHHHHhhc--CCCCcEEEE-ecCCCCcccccCHH---HHHHHH-HhCCCcEEEEeCccCcccccC
Q psy12791 122 GLEVDFVDLR----KIENLIKYI--KPNTKMVWI-ENPTNPLMTVFDVK---AISAVV-KQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 122 g~~v~~~~~~----d~~~l~~~l--~~~~~~v~l-~~p~nptG~~~~~~---~l~~l~-~~~~~~~livDea~~~~~~~~ 190 (393)
|++++.++.+ |++++++++ .+++++|++ ++||||||.+++.+ +|.++| +++ |+++|+||+|....+..
T Consensus 145 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~~~li~De~y~~~~~~~ 223 (423)
T 3ez1_A 145 GFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP-DFTIFADDAYRVHHLVE 223 (423)
T ss_dssp TCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST-TCEEEEECTTSSCBCCS
T ss_pred CCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc-CCEEEEECCcchhhcCC
Confidence 9999998875 899999998 567999986 48999999999966 777788 889 99999999999532211
Q ss_pred ----C-----------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-
Q psy12791 191 ----S-----------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 191 ----~-----------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (393)
+ ...+++++++||||++ .+|+|+||++++ +++++.++..........+...+..+...++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~--~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 300 (423)
T 3ez1_A 224 EDRAEPVNFVVLARDAGYPDRAFVFASTSKIT--FAGAGLGFVASS-EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEY 300 (423)
T ss_dssp SSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS--CSSSSCEEEEEC-HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCCcchhhhhhccCCCCeEEEEeCchhhc--cCCcceEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhc
Confidence 1 0235679999999984 679999999997 88999888777766666666665544333221
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhh-CCCc---ceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 255 -------LPCRLKEHERGSIEVAKFLES-HPCV---KGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 255 -------~~~~~~~~~~~~~~l~~~l~~-~~~~---~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
+....+.+.++.+.+.+.|.+ ++.+ ..+..|. .+.++++.+++. ..+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~ 362 (423)
T 3ez1_A 301 PGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK----------------GGYFISLDTAEP--VADRVVK 362 (423)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS----------------BSSCEEEEESSS--CHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC----------------ccEEEEEECCCC--cHHHHHH
Confidence 222233334455555555543 2221 1222222 246789999532 2344555
Q ss_pred hcCccccccccCC-ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 324 SLLIFRCAESLGG-IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 324 ~l~~~~~~~~~g~-~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.+...++.+..++ .+.... +..++++|||++.. ++++++.+.+.|.+
T Consensus 363 ~l~~~gv~v~~~g~~~~~~~------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 410 (423)
T 3ez1_A 363 LAEAAGVSLTPAGATYPAGQ------------------DPHNRNLRLAPTRP-PVEEVRTAMQVVAA 410 (423)
T ss_dssp HHHHTTEECCCTTTTSSTTC------------------CSSSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred HHHHCCcEEecCcccccCCC------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 5555567776633 321100 01268999999876 44445554444443
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=243.36 Aligned_cols=307 Identities=14% Similarity=0.140 Sum_probs=201.8
Q ss_pred CCccCCeeeeCCCCCCCCCccccCCC-CchHHHHHHHHHHHhC------------CC-cEEEeccHHHH-H-HHHHHhcC
Q psy12791 32 PIILSTTFKQNTPGQPPQGFEYSRSN-NPTRRNLERCIASLEE------------AK-HGLCYSSGLGA-V-TAVTHLLS 95 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~lr~~la~~~~------------~~-~~i~~~~G~~a-l-~~~~~~~~ 95 (393)
.+.+++.+.+++.+.+... ....|+ ..+..++|+++|++++ .+ +.+++++|+++ + .++..+++
T Consensus 48 ~~~~~~~v~~a~~~~~~~~-~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~ 126 (416)
T 1bw0_A 48 NLLTSAAQIKKLKEAIDSQ-ECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD 126 (416)
T ss_dssp CSCCCHHHHHHHHHHHHTT-CSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHhhCC-ccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC
Confidence 3555555555443321111 122333 3467899999999988 33 67777777665 7 66777889
Q ss_pred CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHH
Q psy12791 96 AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAI 165 (393)
Q Consensus 96 ~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l 165 (393)
+||+|+++.|+|++ +...++..|++++.++.+ |++++++.+.+++++|++++|+||||.++| +++|
T Consensus 127 ~gd~vl~~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i 202 (416)
T 1bw0_A 127 AGDYALVPQPGFPH----YETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDI 202 (416)
T ss_dssp TTCEEEEEESCCTH----HHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CCCEEEEcCCCcHh----HHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHH
Confidence 99999999999985 556678889999888752 789999999888999999999999999999 8999
Q ss_pred HHHHHhCCCcEEEEeCccCcccccC--------CCC----CcCcEEEEcccccccCCCCceEEEEEecCh-HHHHHH---
Q psy12791 166 SAVVKQHPDILLVLDNTFLTAYYQK--------SLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-SLQARL--- 229 (393)
Q Consensus 166 ~~l~~~~~~~~livDea~~~~~~~~--------~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~~~~~~--- 229 (393)
.++|+++ |+++|+||+|..+.+.. ++. .+.+++++|+||++ |.+|+|+||++++++ ++.+.+
T Consensus 203 ~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~G~~~~~~~~~~~~~~~~~ 280 (416)
T 1bw0_A 203 VRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEG 280 (416)
T ss_dssp HHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHH
T ss_pred HHHHHHc-CCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceEEEEEeeCchhhHHHHHHH
Confidence 9999999 99999999999854321 111 12358899999999 689999999999754 333333
Q ss_pred -HHHHHhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCC
Q psy12791 230 -KFLQNSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT 303 (393)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 303 (393)
+..... ....++..+..+...++ .+...+++..++.+.+.+.|+++|++. +..|. .
T Consensus 281 ~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------~ 342 (416)
T 1bw0_A 281 LKRVGML-VCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMPR----------------G 342 (416)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCC----------------B
T ss_pred HHHHhcc-ccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCC----------------e
Confidence 222211 22344555544444332 234456666777888888888766653 22222 1
Q ss_pred cceEEEEEcCC----HHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH
Q psy12791 304 SGMLSFYVNGG----AEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378 (393)
Q Consensus 304 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~ 378 (393)
+.++++.++.. ......+.+.+ +..++.+..|..+. .++++|+|++. +++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----------------------~~~~iRis~~~--~~e 397 (416)
T 1bw0_A 343 AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----------------------APGFTRLTTTR--PVE 397 (416)
T ss_dssp TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCS--CHH
T ss_pred eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----------------------CCCeEEEEecC--CHH
Confidence 45678887410 01233444443 33455555544321 14799999973 344
Q ss_pred HHHHHHHHHH
Q psy12791 379 LIADLDQALR 388 (393)
Q Consensus 379 ~i~~l~~al~ 388 (393)
.++...+.|.
T Consensus 398 ~l~~~l~~l~ 407 (416)
T 1bw0_A 398 VYREAVERIK 407 (416)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=248.34 Aligned_cols=320 Identities=13% Similarity=0.126 Sum_probs=210.8
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC---CccccCC-CCchHHHHHHHHHHHh----CCC-cEEEeccHHHH-HHHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ---GFEYSRS-NNPTRRNLERCIASLE----EAK-HGLCYSSGLGA-VTAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~---~~~y~~~-~~~~~~~lr~~la~~~----~~~-~~i~~~~G~~a-l~~~ 90 (393)
.+.+| +++.+++.+++.+.+++.+.+.. ......| +..+..+||+++|+++ +.+ ++|++++|+++ +.++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~ 148 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI 148 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH
Confidence 35677 77778777776666554332110 0112233 2356789999999998 544 78888888776 6444
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcE----------EEeeCCCCHHHHHhhcC--CCCcEEEEecCCCCccc
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE----------VDFVDLRKIENLIKYIK--PNTKMVWIENPTNPLMT 158 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~----------v~~~~~~d~~~l~~~l~--~~~~~v~l~~p~nptG~ 158 (393)
..++++||+|++++|+|++ +...++..|.+ ++.++.++.+.+...+. +++++|++++||||||.
T Consensus 149 ~~l~~~gd~Vl~~~p~~~~----~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~ 224 (449)
T 3qgu_A 149 QMMFGSKPTVAVQDPSYPV----YVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGA 224 (449)
T ss_dssp HHHHCSSSCEEEEESCCTH----HHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCC
T ss_pred HHHhCCCCEEEEcCCCChh----HHHHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCC
Confidence 7788999999999999985 55666777877 88888753222221121 47899999999999999
Q ss_pred ccC---HHHHHHHHHhCCCcEEEEeCccCcccccC--C--C---C--CcCcEEEEcccccccCCCCceEEEEEecChHHH
Q psy12791 159 VFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK--S--L---P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226 (393)
Q Consensus 159 ~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~--~--~---~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~ 226 (393)
+++ +++|.++|+++ |+++|+||+|+.+.... + + . .++++++.|+||++ |++|+|+||++++ ++++
T Consensus 225 ~~~~~~l~~l~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~ 301 (449)
T 3qgu_A 225 AATRAQLTELVNFARKN-GSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGWTVVP-KALK 301 (449)
T ss_dssp CCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEEEECC-TTCB
T ss_pred cCCHHHHHHHHHHHHHC-CcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEEEecC-HHHH
Confidence 998 77788889999 99999999999865431 1 1 1 24579999999999 7999999999997 5544
Q ss_pred H--------HHHHHHHhcCCCCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcch
Q psy12791 227 A--------RLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNH 293 (393)
Q Consensus 227 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~ 293 (393)
+ .+...........++..+..+...++. +...++++.++.+.+.+.|++. ++. +..+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~------- 372 (449)
T 3qgu_A 302 YANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFS-VYGGD------- 372 (449)
T ss_dssp CTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EEESS-------
T ss_pred hhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-eeCCC-------
Confidence 3 344444444445566666655555543 3445666677788888888765 333 22121
Q ss_pred HHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 294 ELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
.+.++++.+++ .....+.+.+. ..++.+..|..+.. ..+++||||+.
T Consensus 373 ---------~~~~~~~~~~~--~~~~~~~~~l~~~~gI~v~pg~~f~~---------------------~~~~~iRis~~ 420 (449)
T 3qgu_A 373 ---------DAPYIWVGFPG--KPSWDVFAEILERCNIVTTPGSGYGP---------------------AGEGFVRASAF 420 (449)
T ss_dssp ---------SSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEEECC
T ss_pred ---------CeeEEEEECCC--CCHHHHHHHHHHHCCEEEecchHhCC---------------------CCCCeEEEEec
Confidence 24678888842 11223333322 22555555544321 01589999964
Q ss_pred CCChHHHHHHHHHHHHHhh
Q psy12791 373 VEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 373 ~~~~~~~i~~l~~al~~~~ 391 (393)
. ++++++.+.++|+++.
T Consensus 421 ~--~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 421 G--SRENILEAVRRFKEAY 437 (449)
T ss_dssp S--CHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 4 6666777777776654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=241.03 Aligned_cols=285 Identities=16% Similarity=0.162 Sum_probs=197.5
Q ss_pred chHHHHHHHHHHHh----C---CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 59 PTRRNLERCIASLE----E---AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~---~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+..++|+++|+++ | .+ +.|++++|+++ + .++.+++++||+|+++.|+|++ +...++..|++++.+
T Consensus 85 ~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~v 160 (425)
T 1vp4_A 85 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLG----AINAFRQYLANFVVV 160 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHH----HHHHHHHcCCEEEEe
Confidence 46789999999998 8 43 68888888775 7 6777788999999999999985 566677889999988
Q ss_pred CCC----CHHHHHhhcCC--------CCcEEE-EecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC--
Q psy12791 129 DLR----KIENLIKYIKP--------NTKMVW-IENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-- 190 (393)
Q Consensus 129 ~~~----d~~~l~~~l~~--------~~~~v~-l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-- 190 (393)
+.+ |++++++.+++ ++++|+ +++|+||||.++| +++|.++|+++ |+++|+||+|+.+.+..
T Consensus 161 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~ 239 (425)
T 1vp4_A 161 PLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGET 239 (425)
T ss_dssp EEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCC
T ss_pred ccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCC
Confidence 764 78889888865 688885 6899999999998 56888999999 99999999999865421
Q ss_pred CCC------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC------HHHH
Q psy12791 191 SLP------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT------LPCR 258 (393)
Q Consensus 191 ~~~------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 258 (393)
+.. .+.+++++|+||++ | +|+|+||++++ +++++.+...........++..+..+...++. +...
T Consensus 240 ~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 316 (425)
T 1vp4_A 240 VDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPT 316 (425)
T ss_dssp CCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred CcCHHHhCCCCCEEEEecccccc-c-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 111 24679999999999 7 99999999998 88888887655544334455555544444322 2334
Q ss_pred HHHHHHHHHHHHHHHhhC-C---CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 259 LKEHERGSIEVAKFLESH-P---CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~-~---~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
++++.++++.+.+.|++. + ++. +..|. .+.++++.++.. .....+.+.+...++.+..
T Consensus 317 ~~~~~~~~~~l~~~L~~~~~~~~g~~-~~~~~----------------~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~ 378 (425)
T 1vp4_A 317 IELYRRKRTVMLNALEEYFSDIPGVK-WVKSE----------------GGLFIWLTLPEG-FDTWEMFEYAKRKKVFYVP 378 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCE-ECCCS----------------BSSEEEEECCTT-CCTTTTHHHHHHHTEECEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceE-EecCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEEC
Confidence 455566777888888763 4 232 22222 245788888521 1122333333333555555
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
|..+... +..++++|||++.. ++++++.+.++|++
T Consensus 379 g~~f~~~-------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 379 GRVFKVY-------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp GGGGCTT-------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred chhhcCC-------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 4433210 01257999999975 45555555555543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=239.20 Aligned_cols=295 Identities=16% Similarity=0.177 Sum_probs=209.4
Q ss_pred CchHHHHHHHHHHHhCC--CcEEEeccHH-HHH-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 58 NPTRRNLERCIASLEEA--KHGLCYSSGL-GAV-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~--~~~i~~~~G~-~al-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
.+...++|+++|++++. ++.+++++|+ +++ .++..+ +++||+|++++|+|++++..+...++..|++++.++
T Consensus 66 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 145 (406)
T 1kmj_A 66 TEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIP 145 (406)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEe
Confidence 46678999999999998 3666666665 557 667777 789999999999999877677777788899999998
Q ss_pred CC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcc
Q psy12791 130 LR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSL 203 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~ 203 (393)
.+ |++++++.+.+++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... ..++|+++.|+
T Consensus 146 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~ 224 (406)
T 1kmj_A 146 LNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQH-GAKVLVDGAQAVMHHPVDVQALDCDFYVFSG 224 (406)
T ss_dssp BCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHT-TCEEEEECTTTTTTSCCCHHHHTCSEEEEEG
T ss_pred cCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHc-CCEEEEEchhhcCCCCCcccccCCCEEEEEc
Confidence 74 78999999988899999999999999999999999999999 9999999999875431111 13689999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHHh---------------------c-CCCCCHHHHHHHHhccC-----CHH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNS---------------------M-GVVPSPFDCWLVTRGLK-----TLP 256 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~-----~~~ 256 (393)
||.+ |++| +||++++ +++++.++..... + .+.........+...++ .+.
T Consensus 225 ~K~~-g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 300 (406)
T 1kmj_A 225 HKLY-GPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN 300 (406)
T ss_dssp GGTT-SCTT--CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred hhcc-CCCC--cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 9999 7888 8999997 8887776432210 1 11222222221112222 234
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccC
Q psy12791 257 CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLG 335 (393)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g 335 (393)
...++..++.+.+.+.|++++++. +..+. ..++++.+.+++ +. ..+.+.+...++.+..|
T Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~l~~~gi~v~~g 361 (406)
T 1kmj_A 301 NIAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKHHA---YDVGSFLDNYGIAVRTG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTCCH---HHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE-EecCC---------------CcCCEEEEEECCCCH---HHHHHHHhhCCcEEEec
Confidence 455666677888888888776654 22221 025777788843 22 33444444445655555
Q ss_pred CccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 336 GIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 336 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++.. .....|. ++++|||++..+++++++.+.++|+++.
T Consensus 362 ~~~~~~--------------~~~~~g~-~~~iRis~~~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 362 HHCAMP--------------LMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp CTTCHH--------------HHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cccchH--------------HHHhcCC-CCeEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 432210 0000111 5899999999999999999999988764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=234.97 Aligned_cols=315 Identities=13% Similarity=0.079 Sum_probs=216.2
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC---cEEEeccHHH-HHHHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK---HGLCYSSGLG-AVTAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~---~~i~~~~G~~-al~~~~~~~~~gd~vl~~~ 104 (393)
+..|..+++.+.+++.+.+.. .+.....+...++++.+++++|.+ +.+++++|++ ++.++..++++||+|++++
T Consensus 7 ~~gp~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~vi~~~ 84 (384)
T 3zrp_A 7 HVGPTTIKEDVLVAGLENNVG--FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAMESVTSLLKPNDKILVVS 84 (384)
T ss_dssp CSSCSCCCHHHHHHTTCCSCC--TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHHHGGGGCCTTCEEEEEC
T ss_pred cCCCCCCCHHHHHHhhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHHHHHhhcCCCCEEEEec
Confidence 456666677777776654321 122112456788999999999976 4566666655 5565556789999999999
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
++|++. .+...++..|++++.++.+ |++++++.+.+ ++++|++++|+||||.++|+++|.++|+++ |+++|
T Consensus 85 ~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li 161 (384)
T 3zrp_A 85 NGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKY-VELIV 161 (384)
T ss_dssp SSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGG-EEEEE
T ss_pred CCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhc-CCEEE
Confidence 999753 3556678899999999886 89999999987 799999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH-------------HHHHHhc--------
Q psy12791 179 LDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL-------------KFLQNSM-------- 236 (393)
Q Consensus 179 vDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~-------------~~~~~~~-------- 236 (393)
+|++|+.+...... ..++|+++.|+||+++|++| +||++++ +++++.+ .......
T Consensus 162 ~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (384)
T 3zrp_A 162 VDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAG--LGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA 238 (384)
T ss_dssp EECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSS--EEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCC
T ss_pred EECcccccCccccccccCCCEEEecCcccccCCCc--eEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCC
Confidence 99999865543222 24789999999999877777 9999997 7777666 2222110
Q ss_pred --CCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 237 --GVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 237 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
.+..+......+...++ .+....++..++.+.+.+.|+++ ++. +..+. . ....+.+++|
T Consensus 239 ~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~--------~~~~~~~~~~ 304 (384)
T 3zrp_A 239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLE-IVARR----P--------ESYSNTVTGV 304 (384)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSCSS----G--------GGBCSSEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCe-EccCc----c--------cccCccEEEE
Confidence 01333333322222222 24456666777788888888876 332 11110 0 0112467788
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.+++ .....+.+.+...++.+..|..+ + .+++|++++..+++++++.+.++|++
T Consensus 305 ~~~~--~~~~~~~~~l~~~gi~v~~g~~~-----~-------------------~~~iRi~~~~~~~~e~i~~~~~~l~~ 358 (384)
T 3zrp_A 305 ILKV--ADPQKVLAGTVNEGVEFAPGVHP-----A-------------------FKYFRIGHMGWVTPNDAIIAISVIER 358 (384)
T ss_dssp ECSS--SCHHHHHHHHHTTTCCCEECCCT-----T-------------------CCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred ECCC--CCHHHHHHHHHHCCEEEecCCCC-----C-------------------cCEEEEeccccCCHHHHHHHHHHHHH
Confidence 8853 33445555554445555443210 0 17899999988888888888888876
Q ss_pred hh
Q psy12791 390 AC 391 (393)
Q Consensus 390 ~~ 391 (393)
+.
T Consensus 359 ~l 360 (384)
T 3zrp_A 359 TL 360 (384)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=244.13 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=162.1
Q ss_pred CchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhc-CCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLL-SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..++|+++|++++ . ++.|++|+|+++ + .++..++ ++||.|+++.|+|.. +...++..|++++.
T Consensus 133 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~ 208 (500)
T 3tcm_A 133 SQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPL----YSASIALHGGALVP 208 (500)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTH----HHHHHHHTTCEEEE
T ss_pred CcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHh----HHHHHHHcCCEEEE
Confidence 3567889999999863 3 367777777665 7 6666777 799999999999984 66777888999999
Q ss_pred eCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-
Q psy12791 128 VDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK- 190 (393)
Q Consensus 128 ~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~- 190 (393)
++++ |++++++.+.+ ++++|++++|+||||.+++ +++|.++|+++ ++++|+||+|..+.+..
T Consensus 209 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~-~~~li~Deay~~~~~~~~ 287 (500)
T 3tcm_A 209 YYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNE-GLVLLADEVYQENIYVDN 287 (500)
T ss_dssp EECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCCTT
T ss_pred EecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccccccCCC
Confidence 8853 78999998875 6899999999999999998 55667779999 99999999999865521
Q ss_pred -CC-C-------C------cCcEEEEcccccccCCCCceEEEEEec--ChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Q psy12791 191 -SL-P-------W------GVDIVLYSLTKYMNGHSDVVMGATVTN--DDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 191 -~~-~-------~------~~di~~~S~sK~~~G~~G~r~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
+. . . ...++++|+||.+.|++|+|+||+++. ++++++.+...... ..+.+...+..+...++
T Consensus 288 ~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~ 366 (500)
T 3tcm_A 288 KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMN 366 (500)
T ss_dssp CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhc
Confidence 11 1 1 124888999999866999999999982 37888888766543 33444544444433332
Q ss_pred --------------CHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 254 --------------TLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 254 --------------~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
.....++++.++++.+.+.|++++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~ 407 (500)
T 3tcm_A 367 PPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGIT 407 (500)
T ss_dssp CCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 233345566777888889998876654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=238.39 Aligned_cols=300 Identities=15% Similarity=0.119 Sum_probs=209.9
Q ss_pred CchHHHHHHHHHHHhCC-C-cEEEeccH-HHHH-HHHHHh----cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 58 NPTRRNLERCIASLEEA-K-HGLCYSSG-LGAV-TAVTHL----LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~-~-~~i~~~~G-~~al-~~~~~~----~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
.+...++|+++|++++. + +.+++++| ++++ .++..+ +++||+|++++|+|+++...+...++..|++++.++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 150 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 150 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEec
Confidence 35678999999999998 3 45555554 5567 677777 789999999999999865556666777899999998
Q ss_pred CC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcc
Q psy12791 130 LR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSL 203 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~ 203 (393)
.+ |++++++++++++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... ..++|+++.|+
T Consensus 151 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~D~a~~~~~~~~~~~~~~~di~~~s~ 229 (420)
T 1t3i_A 151 LDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQA-GAKVLVDACQSAPHYPLDVQLIDCDWLVASG 229 (420)
T ss_dssp BCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHT-TCEEEEECTTTTTTSCCCHHHHTCSEEEEEG
T ss_pred cCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHc-CCEEEEEhhhccCCccCchhhcCCCEEEEeh
Confidence 73 79999999998899999999999999999999999999999 9999999999976432111 23689999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHHh--------------------cCCCCCHHHHHHHHh-ccC-----CHHH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--------------------MGVVPSPFDCWLVTR-GLK-----TLPC 257 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~-----~~~~ 257 (393)
||.+ |++| +||++++ +++.+.++..... +....++..+.++.. .++ .+..
T Consensus 230 sK~~-~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 305 (420)
T 1t3i_A 230 HKMC-APTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMEN 305 (420)
T ss_dssp GGTT-SCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhhc-CCCc--eEEEEEc-hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHH
Confidence 9987 6888 9999997 7887766432211 111122233322221 222 2445
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCc
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGI 337 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 337 (393)
..++..++.+.+.+.|++++++. +..+... ..+.++++.+.+++ .....+.+.+...++.+..|..
T Consensus 306 ~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~ 371 (420)
T 1t3i_A 306 IHNYEVELTHYLWQGLGQIPQLR-LYGPNPK-----------HGDRAALASFNVAG--LHASDVATMVDQDGIAIRSGHH 371 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEE-EESCCGG-----------GSCBCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCeE-EeCCCcc-----------ccccCCEEEEEECC--CCHHHHHHHHHHCCeEEeeccc
Confidence 56677778888899998876654 2222100 00235788888853 1233455555555666666543
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++.. .....|. ++++|+|++..+++++++.+.++|+++.
T Consensus 372 ~~~~--------------~~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 372 CTQP--------------LHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp TCHH--------------HHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHhcCC-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 3210 0001111 5799999999889888998888887654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=235.80 Aligned_cols=285 Identities=18% Similarity=0.225 Sum_probs=197.7
Q ss_pred chHHHHHHHHHHHh----CC---CcEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 59 PTRRNLERCIASLE----EA---KHGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 59 ~~~~~lr~~la~~~----~~---~~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
.+..++|+++|+++ |. ++.+++++|++ ++ .++..++++||+|+++.|+|++ +...++..|++++.++
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~v~ 150 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYIN----TLLAFEQLGAKIEGVP 150 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHH----HHHHHHHcCCEEEEcc
Confidence 46789999999998 73 36777878765 57 6777778899999999999985 5566778899999887
Q ss_pred CC----CHHHHHhhcC----C--CCcEEE-EecCCCCcccccCHH---HHHHHHHhCCCcEEEEeCccCccccc-CC---
Q psy12791 130 LR----KIENLIKYIK----P--NTKMVW-IENPTNPLMTVFDVK---AISAVVKQHPDILLVLDNTFLTAYYQ-KS--- 191 (393)
Q Consensus 130 ~~----d~~~l~~~l~----~--~~~~v~-l~~p~nptG~~~~~~---~l~~l~~~~~~~~livDea~~~~~~~-~~--- 191 (393)
.+ |++++++.+. + ++++|+ +++|+||||.++|.+ +|.++|+++ |+++|+||+|+.+.+. .+
T Consensus 151 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~ 229 (407)
T 2zc0_A 151 VDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVP 229 (407)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBSSCSSCCC
T ss_pred cCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCcccccCCCCCCC
Confidence 74 7899998887 5 788875 689999999999976 999999999 9999999999986542 11
Q ss_pred C-C---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC-------HHHHHH
Q psy12791 192 L-P---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT-------LPCRLK 260 (393)
Q Consensus 192 ~-~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 260 (393)
+ . .+.+++++|+||++ | +|+|+||++++ +++.+.++.....+....++..+..+...++. +....+
T Consensus 230 ~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 306 (407)
T 2zc0_A 230 LKALDNEGRVIVAGTLSKVL-G-TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALL 306 (407)
T ss_dssp GGGGCSSCCEEEEEESTTTT-C-TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHH
T ss_pred hhhcCCCCCEEEEccccccc-C-CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 1 1 14568999999999 6 89999999997 88888887766554444455555444333322 223445
Q ss_pred HHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc-ccccccCCcc
Q psy12791 261 EHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF-RCAESLGGIE 338 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~ 338 (393)
+..++.+.+.+.|++ .+++. +..|. .+.++++.++. ......+.+.+... ++.+..|..+
T Consensus 307 ~~~~~~~~l~~~L~~~~~~~~-~~~~~----------------~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~~ 368 (407)
T 2zc0_A 307 GYKEKRDIMLKALENHLPNAE-FTKPI----------------AGMFVMFFLPE-GADGISFANELMEREGVVVVPGKPF 368 (407)
T ss_dssp HHHHHHHHHHHHHHHHCTTSC-BCCCS----------------BSSEEEEECST-TCCHHHHHHHHHHHTCEECBCSGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCE-EecCC----------------CcEEEEEEcCC-CCCHHHHHHHHHHhCCeEEECchhc
Confidence 556667777888865 34432 11122 24578888842 11233455555443 5666655433
Q ss_pred ccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 339 SLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 339 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
... +..++++|+|++.. ++++++.+.++|++
T Consensus 369 ~~~-------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 399 (407)
T 2zc0_A 369 YTD-------------------ESGKNAIRLNFSRP-SKEEIPIGIKKLAK 399 (407)
T ss_dssp CSS-------------------SCCTTEEEEECSSS-CTTHHHHHHHHHHH
T ss_pred cCC-------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 210 01258999999976 45555555555543
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=236.58 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHHhC--------C-CcEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCCcEEE
Q psy12791 59 PTRRNLERCIASLEE--------A-KHGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIGLEVD 126 (393)
Q Consensus 59 ~~~~~lr~~la~~~~--------~-~~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g~~v~ 126 (393)
.+..+||+++|++++ . ++.+++++|.+ ++ .++..++++||.|+++.|+|.+ +...+. ..|.+++
T Consensus 86 ~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~----~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 86 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPG----FDRDLKWRTGVEIV 161 (435)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTT----HHHHTTTTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCcccc----HHHHHHHhcCCEEE
Confidence 456899999999987 3 35667766665 57 7777888999999999999986 444455 7899999
Q ss_pred eeCCC-------CHHHHHhhcCC------CCcEEEEecCCCCcccccCH---HHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 127 FVDLR-------KIENLIKYIKP------NTKMVWIENPTNPLMTVFDV---KAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 127 ~~~~~-------d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~---~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
.++.+ |++++++.+.+ ++++|++++|+||||.+++. ++|.++|+++ |+++|+||+|+.+.+..
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~ 240 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSS 240 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCC
Confidence 98874 78899988864 78999999999999999984 7788889999 99999999998754321
Q ss_pred C--CC----------------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Q psy12791 191 S--LP----------------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL 252 (393)
Q Consensus 191 ~--~~----------------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
. .. .+.++++.|+||.+ |++|+|+||++++++.+.+.++.....+ ..++..+..+...+
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 317 (435)
T 3piu_A 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHLLSAML 317 (435)
T ss_dssp SCCCCHHHHHHC-------CGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHHHHHHH
T ss_pred CCCcCHHHhccccccccccCCCCCEEEEEeeeccc-CCCceeEEEEEeCCHHHHHHHHHHhhcC--CCCHHHHHHHHHHh
Confidence 1 11 23348999999999 7999999999997678888776554433 23444443333333
Q ss_pred CC-------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----HHHHHH
Q psy12791 253 KT-------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-----AEETRI 320 (393)
Q Consensus 253 ~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 320 (393)
+. +...++++.++.+.+.+.|++. ++. +..+. .+.++++.++.. .+....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~l~~~~~~~~~~~~~~ 379 (435)
T 3piu_A 318 SDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GIS-CLNGN----------------AGLFCWVDMRHLLRSNTFEAEME 379 (435)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCE-ECCCC----------------SSSEEEEECGGGSSSSSHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-ccCCC----------------eeEEEEEEcccccccCCchhHHH
Confidence 22 2334455566677777888765 332 21111 135788888521 113444
Q ss_pred HHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 321 FLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 321 ~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.+.+ +..++.+..|..+.. ..++++||+++.. ++++++.+.+.|+++
T Consensus 380 ~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 380 LWKKIVYEVHLNISPGSSCHC---------------------TEPGWFRVCFANL-PERTLDLAMQRLKAF 428 (435)
T ss_dssp HHHHHHHTSCEECEEGGGGTC---------------------SSTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCcccCC---------------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHH
Confidence 55544 333566655544321 1268999999765 555555555555443
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=239.57 Aligned_cols=217 Identities=13% Similarity=0.151 Sum_probs=164.8
Q ss_pred CchHHHHHHHHHHHh-----CC---CcEEEeccHHHH-H-HHHHHhcCCCC----eEEEcCCCccchHHHHHHhcccCCc
Q psy12791 58 NPTRRNLERCIASLE-----EA---KHGLCYSSGLGA-V-TAVTHLLSAGD----HIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 58 ~~~~~~lr~~la~~~-----~~---~~~i~~~~G~~a-l-~~~~~~~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
..+..++|+++|+++ |. ++.|++|+|+++ + .++..++++|| .|+++.|+|+. +...++..|+
T Consensus 128 ~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~----~~~~~~~~g~ 203 (498)
T 3ihj_A 128 SQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPL----YSAVISELDA 203 (498)
T ss_dssp CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTH----HHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchh----HHHHHHHcCC
Confidence 356778999999876 44 367888888776 7 66677888875 99999999984 6777788899
Q ss_pred EEEeeCCC-------CHHHHHhhcCC-----CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 124 EVDFVDLR-------KIENLIKYIKP-----NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 124 ~v~~~~~~-------d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
+++.++++ |++++++.+.+ ++++|++++||||||.+++ +++|.++|+++ +++||+||+|..+.+
T Consensus 204 ~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~-~~~li~De~y~~~~~ 282 (498)
T 3ihj_A 204 IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADEVYQDNVY 282 (498)
T ss_dssp EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBC
T ss_pred EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CcEEEEEcCcccccc
Confidence 99999876 78999998865 5899999999999999998 66788999999 999999999998765
Q ss_pred cCC---CCC--------------cCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12791 189 QKS---LPW--------------GVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKFLQNSMGVVPSPFDCWLVT 249 (393)
Q Consensus 189 ~~~---~~~--------------~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
... ... ...++++|+||.++|++|+|+||++. .++++++.+....... .+.+...+..+.
T Consensus 283 ~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~q~a~~ 361 (498)
T 3ihj_A 283 SPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSGQAAMD 361 (498)
T ss_dssp CTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHHHHHHH
Confidence 321 110 12478999999997799999999984 3488988887665533 344444444444
Q ss_pred hccCC--------------HHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 250 RGLKT--------------LPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 250 ~~~~~--------------~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
..++. ....++++.++++.+.+.|+++|++.
T Consensus 362 ~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~ 406 (498)
T 3ihj_A 362 IVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIH 406 (498)
T ss_dssp HHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 44431 22345666778888999998877654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=240.68 Aligned_cols=294 Identities=15% Similarity=0.110 Sum_probs=204.5
Q ss_pred CchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 58 NPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
.+...++++++|+++|.+ +.+++++|+++ + .++.++ +++||+|+++.++|+++...+...++..|++++.++.+
T Consensus 68 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~ 147 (406)
T 3cai_A 68 AAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD 147 (406)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC
Confidence 467889999999999987 67777777665 6 555555 78999999999999987655555555579999999875
Q ss_pred ------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccc
Q psy12791 132 ------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLT 204 (393)
Q Consensus 132 ------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~s 204 (393)
|++++++.+++++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... ..++|+++.|+|
T Consensus 148 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (406)
T 3cai_A 148 IETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDV-GALVVVDHSAAAPYRLLDIRETDADVVTVNAH 226 (406)
T ss_dssp TTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHT-TCEEEEECTTTTTTCCCCHHHHCCSEEEEEGG
T ss_pred cccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHc-CCEEEEEcccccCCCCCCchhcCCCEEEeehh
Confidence 78999999988899999999999999999999999999999 9999999999865431111 246899999999
Q ss_pred ccccCCCCceEE-EEEecChHHHHHHHHHHH---------hcCCCCCHHHHHH---HHhccC----------------CH
Q psy12791 205 KYMNGHSDVVMG-ATVTNDDSLQARLKFLQN---------SMGVVPSPFDCWL---VTRGLK----------------TL 255 (393)
Q Consensus 205 K~~~G~~G~r~G-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~~~~~----------------~~ 255 (393)
|++ | ++ +| |++++ +++.+.++.... ...+..+...... +...++ .+
T Consensus 227 K~~-g-~~--~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 301 (406)
T 3cai_A 227 AWG-G-PP--IGAMVFRD-PSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSM 301 (406)
T ss_dssp GGT-S-CS--CEEEEESC-HHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHH
T ss_pred hhc-C-CC--cCeEEEEe-hHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhH
Confidence 988 5 44 78 99987 777766543211 1122233333211 112111 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccC
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLG 335 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 335 (393)
....++..++++.+.+.|++++++. +..+. ...+++++|.+++ .....+.+.|...++.+..|
T Consensus 302 ~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~L~~~gi~v~~g 364 (406)
T 3cai_A 302 QSADAYLNRVFDYLMVSLRSLPLVM-LIGRP--------------EAQIPVVSFAVHK--VPADRVVQRLADNGILAIAN 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEE-ECCCC--------------SSBCSEEEEEETT--BCHHHHHHHHHHTTEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-EcCCc--------------cccCCEEEEEECC--cCHHHHHHHHHHCCcEEecC
Confidence 4455666677888888888776653 22221 1124588888853 12333444444345555554
Q ss_pred CccccccCcccccCCCCChhhHhhcCC--CCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 336 GIESLADLPAEMTHKSIPKETRDALGI--TDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 336 ~~~s~~~~~~~~~~~~~~~~~~~~~g~--~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...... ...|. ..+++|+|++..+++++++.+.++|+++
T Consensus 365 ~~~~~~----------------~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 365 TGSRVL----------------DVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp CSCHHH----------------HHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ChHHHH----------------HHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 411100 01122 2579999999999999999999998765
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=234.45 Aligned_cols=287 Identities=15% Similarity=0.116 Sum_probs=203.8
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+...++|+++|+++|.+ +.+++++| ++++ .++..+ +++||+|+++.|+|++....+...++..|++++.++.+
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 138 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL 138 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence 67889999999999986 45665555 5567 667777 78999999999999976544545567779999999873
Q ss_pred ----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHH----hCCCcEEEEeCccCcccccCCC-CCcCcEEEEc
Q psy12791 132 ----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVK----QHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYS 202 (393)
Q Consensus 132 ----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~----~~~~~~livDea~~~~~~~~~~-~~~~di~~~S 202 (393)
|++++++.+.+++++|++++|+||||.++|+++|.++|+ ++ |+++|+||+|+.+.....+ ..++|+++.|
T Consensus 139 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~-~~~li~Dea~~~g~~~~~~~~~~~d~~~~s 217 (390)
T 1elu_A 139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNY-PVRVLVDGAQSAGSLPLDFSRLEVDYYAFT 217 (390)
T ss_dssp SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSS-CCEEEEECTTTBTTBCCCTTTSCCSEEEEE
T ss_pred CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhc-CcEEEEEcccccCCcCCChhhcCCCEEEcc
Confidence 688999999888999999999999999999999999999 99 9999999999865432222 2468999999
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHHH----------------------HhcCCCCCHHHHHHH---Hhcc---CC
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFLQ----------------------NSMGVVPSPFDCWLV---TRGL---KT 254 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~---~~ 254 (393)
+||++.|+.| +||++++ +++++.++... ....+..+......+ +..+ ..
T Consensus 218 ~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~ 294 (390)
T 1elu_A 218 GHKWFAGPAG--VGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGT 294 (390)
T ss_dssp SSSTTCCCTT--CEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccCCCc--eEEEEEC-HHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9996656665 8999998 66666553211 111223333332222 2211 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
+...+++..++++.+.+.|++++++. +..|. .+.++++.+.++.. .....+.+.|...++.+..
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~ 358 (390)
T 1elu_A 295 AEERYQAICQRSEFLWRGLNQLPHVH-CLATS--------------APQAGLVSFTVDSP-LGHRAIVQKLEEQRIYLRT 358 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEE-ESCSS--------------CCSSSEEEEEECSS-SCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcE-EecCc--------------cccccEEEEEcCCC-CCHHHHHHHHHHCCEEEEe
Confidence 55667777888889999998876653 22221 12357888888411 1233444444433444443
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
|. .++++|+|++...++++++.+.++|+++.
T Consensus 359 ~~--------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 389 (390)
T 1elu_A 359 IA--------------------------DPDCIRACCHYITDEEEINHLLARLADFG 389 (390)
T ss_dssp ET--------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTCC
T ss_pred cC--------------------------CCCeEEEecccCCCHHHHHHHHHHHHhhC
Confidence 21 15799999999999999999998887653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=242.61 Aligned_cols=316 Identities=12% Similarity=0.070 Sum_probs=203.4
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCC---CCccccCCC-CchHHHHHHHHHHHh----CCC-cEEEeccHHHH-HHHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPP---QGFEYSRSN-NPTRRNLERCIASLE----EAK-HGLCYSSGLGA-VTAV 90 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~---~~~~y~~~~-~~~~~~lr~~la~~~----~~~-~~i~~~~G~~a-l~~~ 90 (393)
.+.++ +++.+++.+++.+.+++.+... ....+..|+ ..+..+|++++|+++ +.+ ++|++++|+++ +.++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l 135 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL 135 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH
Confidence 35677 7777777666666554432211 112223343 456789999999986 554 78888888876 6556
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCC------------cEEEeeCCCCHH----HHHhhcCCCCcEEEEecCCC
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIG------------LEVDFVDLRKIE----NLIKYIKPNTKMVWIENPTN 154 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g------------~~v~~~~~~d~~----~l~~~l~~~~~~v~l~~p~n 154 (393)
..++++||.|++++|+|++. ...++..| .+++.++.++.+ ++++ .+++++|++++|||
T Consensus 136 ~~l~~~gd~Vl~~~p~y~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~l~~p~N 209 (432)
T 3ei9_A 136 QVMFGSNVTIAVQDPSYPAY----VDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST--VGRTDIIFFCSPNN 209 (432)
T ss_dssp HHHHCTTCCEEEEESCCTHH----HHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG--CCCCSEEEEESSCT
T ss_pred HHHcCCCCEEEEeCCCCHHH----HHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh--CCCCCEEEEeCCCC
Confidence 77889999999999999863 33333333 356666654211 2222 25789999999999
Q ss_pred CcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-CC-------CCcCcEEEEcccccccCCCCceEEEEEecCh
Q psy12791 155 PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK-SL-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDD 223 (393)
Q Consensus 155 ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~-~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~ 223 (393)
|||.+++ +++|.++|+++ |+++|+||+|+++.... +. ..++++++.|+||.+ |++|+|+||++++ +
T Consensus 210 PtG~~~~~~~l~~l~~la~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~-~ 286 (432)
T 3ei9_A 210 PTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIP-K 286 (432)
T ss_dssp TTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECC-T
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEC-h
Confidence 9999998 56677779999 99999999999764421 11 124579999999999 6999999999998 4
Q ss_pred HH--------HHHHHHHHHhcCCCCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCC
Q psy12791 224 SL--------QARLKFLQNSMGVVPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSH 290 (393)
Q Consensus 224 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~ 290 (393)
++ .+.+...........++..+..+...+.. +...++++.++.+.+.+.|+++ ++... .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~---- 360 (432)
T 3ei9_A 287 KLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVY-GGK---- 360 (432)
T ss_dssp TCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE-ECS----
T ss_pred HHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cceec-CCC----
Confidence 44 67676655544445566665555554432 3445666677888888888865 33322 111
Q ss_pred cchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEE
Q psy12791 291 PNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRL 369 (393)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRl 369 (393)
.+.++|+.+++ . ....+.+.+ +..++.+..|..+.. ..++++|+
T Consensus 361 ------------~~~~~~~~~~~-~-~~~~~~~~ll~~~gv~v~~g~~f~~---------------------~~~~~iRi 405 (432)
T 3ei9_A 361 ------------NAPYVWVHFPN-Q-SSWDVFAEILEKTHVVTTPGSGFGP---------------------GGEGFVRV 405 (432)
T ss_dssp ------------SSSEEEEECTT-S-CHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEE
T ss_pred ------------cceEEEEECCC-C-CHHHHHHHHHHHCCEEEeCchHhCC---------------------CCCCEEEE
Confidence 24678998852 1 122222222 223555555544321 01589999
Q ss_pred EecCCChHHHHHHHHHHHHH
Q psy12791 370 SVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 370 s~~~~~~~~~i~~l~~al~~ 389 (393)
|+.. ++++++...+.|++
T Consensus 406 s~~~--~~e~l~~~l~rl~~ 423 (432)
T 3ei9_A 406 SAFG--HRENILEACRRFKQ 423 (432)
T ss_dssp ECCS--CHHHHHHHHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHH
Confidence 9843 55555555555543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=240.56 Aligned_cols=284 Identities=12% Similarity=0.100 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhCC------C-cEEEeccHHHH-H-HHHHHhcCCCC----eEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 62 RNLERCIASLEEA------K-HGLCYSSGLGA-V-TAVTHLLSAGD----HIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 62 ~~lr~~la~~~~~------~-~~i~~~~G~~a-l-~~~~~~~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
.+||+++|++++. + ++|++|+|+++ + .++..++++|| +|++++|+|.. +...++..|++++.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYST----YVEETTYVRSGMYKW 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTH----HHHHHHTTCBTTEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchh----HHHHHHHcCCeEEEe
Confidence 8999999999872 4 58999999886 7 66777889999 99999999984 677788889888887
Q ss_pred CCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC--CCcCcEEEEccccc
Q psy12791 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL--PWGVDIVLYSLTKY 206 (393)
Q Consensus 129 ~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~--~~~~di~~~S~sK~ 206 (393)
+.+ .+.++ .+++++|++++||||||.+++ +|.+.++.+ ++++|+||+|..... .++ ..+++++++||||.
T Consensus 147 ~~d-~~~l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~-~~~ii~De~y~~~~~-~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 147 EGD-AWGFD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDD-EAKVIHDFAYYWPHY-TPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEE-STTCC---CCSCEEEEEESSCTTTCCCCC--CCC-----C-CCEEEEECTTCSTTT-SCCCCCBCCSEEEEEHHHH
T ss_pred cCC-HHHcC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcC-CCEEEEeCCCCCCCC-CccccCCCCeEEEEechhh
Confidence 764 22232 357899999999999999997 454321222 499999999985211 122 24678999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-------------C-CHHHHHHHHHHHHHHHHHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL-------------K-TLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~l~~~ 272 (393)
+ |++|+|+||++++++++++.+...........+...+..+...+ + .+...++.+.++++.+.+.
T Consensus 219 ~-g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (391)
T 3bwn_A 219 T-GHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV 297 (391)
T ss_dssp H-SCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 79999999999844889888877665433444555444333322 2 2444566667788888999
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSI 352 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~ 352 (393)
|++++++. +..|. .. ............|.++|+.++. .+....+ +...++.+..|..+.
T Consensus 298 L~~~~~~~-~~~p~-~~--~~~f~~~~~~~~g~~~~~~~~~-~~~~~~~---l~~~gV~v~pg~~fg------------- 356 (391)
T 3bwn_A 298 VKESDAFT-LPKYP-EA--FCNYFGKSLESYPAFAWLGTKE-ETDLVSE---LRRHKVMSRAGERCG------------- 356 (391)
T ss_dssp HHTCSSEE-CCCCC-CE--EETTTTEEECCCCSEEEEEESS-SCCHHHH---HHHTTEECEEGGGGT-------------
T ss_pred HHhCCCcc-cccCC-cc--ccccccccCCCcceEEEecCCc-HHHHHHH---HHHCCEEEccCCCCC-------------
Confidence 98775432 11111 00 0000000001123478999952 2233333 333456666655431
Q ss_pred ChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 353 PKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 353 ~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++++|||++. ++++++.+.++|+++
T Consensus 357 ---------~~~~~iRis~~~--~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 357 ---------SDKKHVRVSMLS--REDVFNVFLERLANM 383 (391)
T ss_dssp ---------CCTTEEEEESCS--CHHHHHHHHHHHHSC
T ss_pred ---------CCCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 125899999984 566667777766654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=237.88 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=206.9
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHH
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~ 137 (393)
+...+++++++++++.+..+++++|++++ .++.+++++||.|+++.|+|.+ +...++..|.+++.++..|+++++
T Consensus 104 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~d~~~le 179 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMS----LWEGARYANAQAHPFMHNNCDHLR 179 (409)
T ss_dssp TTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHH----HHHHHHHTTCEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHH----HHHHHHHcCCeEEEecCCCHHHHH
Confidence 45678999999999999999999999887 7788889999999999999986 445567789999999988999999
Q ss_pred hhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCCCcCcEEEEcccccc
Q psy12791 138 KYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLPWGVDIVLYSLTKYM 207 (393)
Q Consensus 138 ~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~~~~di~~~S~sK~~ 207 (393)
+.+.+ ++++|++++|+||||.+.|+++|.++|+++ |++||+||+|+.+.+.. ....+.|+++.|+||++
T Consensus 180 ~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~ 258 (409)
T 3kki_A 180 MLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEF-GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTF 258 (409)
T ss_dssp HHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT
T ss_pred HHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHc-CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhh
Confidence 99875 489999999999999999999999999999 99999999998743311 11225789999999999
Q ss_pred cCCCCceEEEEEecChHHHHHHHHHH--HhcCCCCCHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 208 NGHSDVVMGATVTNDDSLQARLKFLQ--NSMGVVPSPFDCWLVTRGLKTL---PCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
+ ++ +||++++ +++++.++... ..++...++..+..+...++.. ...+++..++.+.+.+.|++.. +.
T Consensus 259 ~-~~---gg~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~-- 330 (409)
T 3kki_A 259 A-YR---AGAIWCN-NEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-LT-- 330 (409)
T ss_dssp C-SS---CEEEEES-SSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-CC--
T ss_pred C-CC---ceEEEEC-HHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-Cc--
Confidence 4 44 5999987 66666665422 2234445565544444433322 3455566777788888887642 11
Q ss_pred eCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
.. +.+.++++.++ .......+.+.+...++.+..+.. +. ...
T Consensus 331 -~~----------------~~~~~~~~~~~-~~~~~~~~~~~L~~~Gv~v~~~~~------~~--------------~~~ 372 (409)
T 3kki_A 331 -IR----------------SESQIIGLETG-DERNTEKVRDYLESNGVFGSVFCR------PA--------------TSK 372 (409)
T ss_dssp -CC----------------CSSSEEEEEEE-SHHHHHHHHHHHHHTTEECEEECT------TS--------------SCT
T ss_pred -cC----------------CCCCEEEEEeC-CHHHHHHHHHHHHHCCceEeeeCC------CC--------------cCC
Confidence 11 12578898884 455556666666544554433211 00 001
Q ss_pred CCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 363 TDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 363 ~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+++||++++..+++++++.+.++|+++.
T Consensus 373 ~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 373 NKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 25899999999999888888888887653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=237.10 Aligned_cols=316 Identities=14% Similarity=0.149 Sum_probs=213.1
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c-EEEeccHHH-HH-HHHHHhcCCCCeEEEc
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H-GLCYSSGLG-AV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i~~~~G~~-al-~~~~~~~~~gd~vl~~ 103 (393)
.+.+|+.+++.+.+++.+.... .|..++.+...++++.+++++|.+ + .+++++|++ ++ .++..++++||+|+++
T Consensus 23 ~~~g~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 100 (393)
T 2huf_A 23 MGPGPSNAPQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIG 100 (393)
T ss_dssp CSSSCCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ecCCCCCCCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4666777777887777665432 233233467889999999999986 3 677766655 57 6777778999999999
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
+|+|++. .+...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.++|+++|.++|+++ |+++
T Consensus 101 ~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~-~~~l 177 (393)
T 2huf_A 101 HTGHWGD--RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQH-NCLL 177 (393)
T ss_dssp ESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT-TCEE
T ss_pred CCCcchH--HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHc-CCEE
Confidence 9999863 2344556789999998863 78999999887 899999999999999999999999999999 9999
Q ss_pred EEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH----H-h---------cC-----
Q psy12791 178 VLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ----N-S---------MG----- 237 (393)
Q Consensus 178 ivDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~----~-~---------~~----- 237 (393)
|+|+++..+.....+ ..++|+++.|+||+++|++|+ ||++++ +++++.++... . . ++
T Consensus 178 i~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 2huf_A 178 IVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRP 254 (393)
T ss_dssp EEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSC
T ss_pred EEEcccccCCCCcchhhcCccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhcccccc
Confidence 999999864432222 246899999999987678995 999997 88888775431 1 0 11
Q ss_pred ----CCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 238 ----VVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 238 ----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
...+......+...++ .+....++..++++.+.+.|+++ ++. +..+. . ...+.+++
T Consensus 255 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~ 319 (393)
T 2huf_A 255 RIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFE-LYADP-----K--------DRLSTVTT 319 (393)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCTTEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCe-eccCc-----c--------ccCCcEEE
Confidence 1223333222222222 24455667777788888888765 332 11110 0 01135788
Q ss_pred EEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQA 386 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~a 386 (393)
+.++. ....+.+.+.|.. .++.+..|..+ ..++++|+++ ++.+++++++.+.++
T Consensus 320 ~~~~~-~~~~~~~~~~L~~~~gi~v~~g~~~-----------------------~~~~~~Ri~~~~~~~~~e~i~~~~~~ 375 (393)
T 2huf_A 320 IKVPQ-GVDWLKAAQYAMKTYLVEISGGLGP-----------------------TAGQVFRIGLMGQNATTERVDRVLQV 375 (393)
T ss_dssp EECCT-TCCHHHHHHHHHHHHCEECBCCCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred EEcCC-CCCHHHHHHHHHHhCCEEEecCccc-----------------------ccCCEEEEEcccCcCCHHHHHHHHHH
Confidence 88741 1123344444432 24555444321 0258999999 555567667777777
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
|+++
T Consensus 376 l~~~ 379 (393)
T 2huf_A 376 FQEA 379 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=231.31 Aligned_cols=314 Identities=16% Similarity=0.118 Sum_probs=216.6
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 53 YSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 53 y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
+.+++.+...++|+++|+++|.+++++++||++++ .++..+ +++||+|+++.|+|++ +...++..|++++.++.
T Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~----~~~~~~~~g~~~~~v~~ 107 (388)
T 1b9h_A 32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFIS----SSQAAQRLGAVTVPVDV 107 (388)
T ss_dssp CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECB
T ss_pred eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHH----HHHHHHHcCCEEEEEec
Confidence 34455688999999999999999999999998778 777777 7899999999999996 44556788999999886
Q ss_pred C------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCc--CcEEEEc
Q psy12791 131 R------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWG--VDIVLYS 202 (393)
Q Consensus 131 ~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~--~di~~~S 202 (393)
+ |++++++.+++++++|+ |+||||.+.++++|.++|+++ |+++|+|++|+.+........+ .|+++.|
T Consensus 108 ~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~-~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S 183 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT-GVPLLQDAAHAHGARWQGKRVGELDSIATFS 183 (388)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH-TCCBCEECTTCTTCEETTEEGGGSSSCEEEE
T ss_pred CCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc-CCEEEEecchhcCCccCCeecccccceEEEE
Confidence 4 78999999988888877 999999999999999999999 9999999999875432111111 2788899
Q ss_pred ccccccCCCCceEEEEEecChHH--HHHHHHHHHh-------------cCC--CCCHHHHHHHHhccCCHHHHHHHHHHH
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSL--QARLKFLQNS-------------MGV--VPSPFDCWLVTRGLKTLPCRLKEHERG 265 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~--~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
|||.. +++|.|+||++++++.+ .+.++..... .|. ..++..++.+...++.+...+++..++
T Consensus 184 ~s~~K-~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~ 262 (388)
T 1b9h_A 184 FQNGK-LMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDER 262 (388)
T ss_dssp CCTTS-SSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccCCC-cccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88544 24445899999985446 5655433211 011 145555555566677787788888888
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+.+.+.|+.++++. +..+. ... ....+.++++.+++. ....+.+.+.|...++.++.+... ....+
T Consensus 263 ~~~l~~~L~~~~~~~-~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~-~~~~~ 330 (388)
T 1b9h_A 263 WTLLSRLLGAIDGVV-PQGGD-VRA---------DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRA-IYRTD 330 (388)
T ss_dssp HHHHHHHHHTSTTCE-ECCCC-TTC---------CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCC-GGGSH
T ss_pred HHHHHHHhccCCCcc-ccCCC-cCC---------CccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCc-cccCh
Confidence 899999998876653 21111 000 011246789998531 234566666665556655543221 11111
Q ss_pred ccccCC-----------CCChhhHhhcCCCCCeEEEEecCCC-hHHHHHHHHHHHHHhh
Q psy12791 345 AEMTHK-----------SIPKETRDALGITDNLVRLSVGVEG-YTDLIADLDQALRKAC 391 (393)
Q Consensus 345 ~~~~~~-----------~~~~~~~~~~g~~~~~iRls~~~~~-~~~~i~~l~~al~~~~ 391 (393)
...... .++..... ..+.|||+++... ++++++.+.++|+++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 331 AFWELGAPDESVDAIARRCPNTDAI----SSDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp HHHHSSCCSSCHHHHHHTCHHHHHH----HHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HhHhcCCCcccccccccCCHHHHHH----HhCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 000000 01111111 1358999999999 9999999999998764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=237.25 Aligned_cols=292 Identities=15% Similarity=0.127 Sum_probs=203.9
Q ss_pred ccCCCCchHHHHHHH-HHHHhCCCcEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 53 YSRSNNPTRRNLERC-IASLEEAKHGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 53 y~~~~~~~~~~lr~~-la~~~~~~~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
+.+++.+...+++++ +|+++|.+ ++++++|++ ++ .++..++++||+|++++|+|++. ...++..|++++.++
T Consensus 47 ~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~----~~~~~~~g~~~~~v~ 121 (371)
T 2e7j_A 47 LDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSS----YVAAERAGLNIALVP 121 (371)
T ss_dssp ------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHH----HHHHHHTTCEEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHH----HHHHHHcCCeEEEee
Confidence 344567889999999 99999988 888888854 57 77777789999999999999863 444678899999999
Q ss_pred --CC-----CHHHHHhhcC-----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcC
Q psy12791 130 --LR-----KIENLIKYIK-----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGV 196 (393)
Q Consensus 130 --~~-----d~~~l~~~l~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~ 196 (393)
.+ |++++++.++ +++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... ..++
T Consensus 122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~ 200 (371)
T 2e7j_A 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEY-DVPLLVNGAYAIGRMPVSLKEIGA 200 (371)
T ss_dssp CCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTT-TCCEEEECTTTBTTBCCCHHHHTC
T ss_pred cccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHc-CCeEEEECccccCCCCCChhhcCC
Confidence 65 7999999887 6899999999999999999999999999999 9999999999986542211 2368
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHH-HHHHHH--hc-----CCCCCHHHHHHHHhccCCHH-HHHHHH--HHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR-LKFLQN--SM-----GVVPSPFDCWLVTRGLKTLP-CRLKEH--ERG 265 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 265 (393)
|++++|+||+++ .++ |+||++++ +++++. ++.... .. ....++.....+...++.+. ...++. .++
T Consensus 201 di~~~s~sK~~~-~~~-~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 277 (371)
T 2e7j_A 201 DFIVGSGHKSMA-ASG-PIGVMGMK-EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK 277 (371)
T ss_dssp SEEEEEHHHHSS-CCS-SCEEEEEC-TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred CEEEecCCcCCC-CCC-CcEEEEEe-chhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 343 79999998 566565 533222 11 22334444333333333332 234455 667
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
++.+.+.|+++ ++. +..+. ...++++++.++ ....+.+.+...++.+.. ..+...
T Consensus 278 ~~~l~~~L~~~-~~~-~~~~~--------------~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~---- 332 (371)
T 2e7j_A 278 ARRFAAEMEKL-GIK-QLGDN--------------PHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRK---- 332 (371)
T ss_dssp HHHHHHHHHHT-TCE-EESSS--------------SCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTT----
T ss_pred HHHHHHHHHHc-CcE-EecCC--------------CccCceEEEECC----CHHHHHHHHHHCCEEEEe-cccccc----
Confidence 77888888776 443 22221 112568888883 456677777655555432 110000
Q ss_pred cccCCCCChhhHhhcCCCCCeEE-EEecCC-ChHHHHHHHHHHHHHhh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVR-LSVGVE-GYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iR-ls~~~~-~~~~~i~~l~~al~~~~ 391 (393)
..|..++++| ++++.. .++++++.+.++|+++.
T Consensus 333 -------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 333 -------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp -------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred -------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHH
Confidence 0022368999 999988 88888888888887654
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=234.19 Aligned_cols=237 Identities=13% Similarity=0.125 Sum_probs=163.4
Q ss_pred CCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHh----CCC--cEEEeccHHHH-H-HHHHHhcCCCCeEEE
Q psy12791 32 PIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLE----EAK--HGLCYSSGLGA-V-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~----~~~--~~i~~~~G~~a-l-~~~~~~~~~gd~vl~ 102 (393)
++.+++.+.+++..... .....| +..+..++|+++++++ +.+ +.+++++|+++ + .++..++++||+|++
T Consensus 54 ~~~~~~~v~~a~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~ 131 (418)
T 3rq1_A 54 NLVFLKTVKEEYLSLSD--SEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLT 131 (418)
T ss_dssp CBCCCHHHHHHHHTCCH--HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccccHHHHHHHHHhcc--cccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEE
Confidence 56566555554433211 112233 3356789999999976 322 27777777665 7 777788999999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCC----CCc-EEEEecC-CCCcccccCHHHHH---H
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKP----NTK-MVWIENP-TNPLMTVFDVKAIS---A 167 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~----~~~-~v~l~~p-~nptG~~~~~~~l~---~ 167 (393)
+.|+|.+ +...++..|.+++.++.+ |++++++.+.+ +++ ++++++| |||||.++|.+++. +
T Consensus 132 ~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~ 207 (418)
T 3rq1_A 132 ADWYWGA----YRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILN 207 (418)
T ss_dssp ESSCCTH----HHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCchh----HHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 9999984 667788899999999863 78899888864 566 8888999 99999999966555 5
Q ss_pred HHH------hCCCcEEEEeCccCcccccC----CC-C----CcC---cEEEEcccccccCCCCceEEEEEe--cChHHHH
Q psy12791 168 VVK------QHPDILLVLDNTFLTAYYQK----SL-P----WGV---DIVLYSLTKYMNGHSDVVMGATVT--NDDSLQA 227 (393)
Q Consensus 168 l~~------~~~~~~livDea~~~~~~~~----~~-~----~~~---di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~ 227 (393)
+|+ ++ ++++|+||+|..+.+.. ++ . ... .++++|+||.+ |++|+|+||+++ +++++++
T Consensus 208 ~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~ 285 (418)
T 3rq1_A 208 FLKDLVAIGRN-NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIAD 285 (418)
T ss_dssp HHHHHHHTSSC-EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHH
T ss_pred HHHHhhhccCC-CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHH
Confidence 555 89 99999999998654321 11 1 112 38899999999 699999999998 2388888
Q ss_pred HHHHHHHhc----CCCCCHHHHHHHHhccCCHH----------HHHHHHHHHHHHHHHHHhhC
Q psy12791 228 RLKFLQNSM----GVVPSPFDCWLVTRGLKTLP----------CRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 228 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+....... ....+...+..+...++... ..++.+.++.+.+.+.|+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (418)
T 3rq1_A 286 EFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV 348 (418)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887654321 23345555555555444421 22344556666677777654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=237.14 Aligned_cols=316 Identities=13% Similarity=0.124 Sum_probs=215.4
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c-EEEeccHHH-HH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H-GLCYSSGLG-AV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i~~~~G~~-al-~~~~~~~~~gd~vl~~~ 104 (393)
+.+|..+++.+.+++.+.... .|+....+..+++++.+++++|.+ + .+++++|++ ++ .++..++++||+|++++
T Consensus 39 ~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~ 116 (393)
T 1vjo_A 39 GPGPSNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV 116 (393)
T ss_dssp SSSCCCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cCCCCCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEc
Confidence 556666666777666554322 232212245678899999999986 5 677776655 57 67777889999999999
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
|+|++. .+...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.+.|+++|.++|+++ |+++|
T Consensus 117 ~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li 193 (393)
T 1vjo_A 117 AGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREF-GTLLL 193 (393)
T ss_dssp SSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHH-TCEEE
T ss_pred CChhHH--HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHc-CCEEE
Confidence 999852 2566677889999999863 78999999887 899999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH----HH---------------hcCC
Q psy12791 179 LDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL----QN---------------SMGV 238 (393)
Q Consensus 179 vDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~----~~---------------~~~~ 238 (393)
+||+|+.+.....+ ..++|+++.|+||+++ .++ |+||++++ +++++.++.. .. ....
T Consensus 194 ~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~-~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
T 1vjo_A 194 VDTVTSLGGVPIFLDAWGVDLAYSCSQKGLG-CSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYH 270 (393)
T ss_dssp EECTTTTTTSCCCTTTTTCSEEECCSSSTTC-SCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCC
T ss_pred EECCccccCcCCcccccCccEEEEcCccccc-CCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCC
Confidence 99999944321111 2467999999999995 566 79999997 7777766321 00 1111
Q ss_pred -CCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 239 -VPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 239 -~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
..+...+..+...++. +...+++..++.+.+.+.|++. ++. +..|. . ...+.+++|.++
T Consensus 271 g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~ 335 (393)
T 1vjo_A 271 HTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLS-LHVEK-----E--------YRLPTLTTVCIP 335 (393)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCSSEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCc-----c--------ccCCcEEEEEcC
Confidence 4455544443333332 3445666777888888888765 332 11111 0 012467888874
Q ss_pred CCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHHHHHh
Q psy12791 313 GGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 313 ~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~al~~~ 390 (393)
. ......+.+.+... ++.+..|..+. .++++|+|+ ++.+++++++.+.++|+++
T Consensus 336 ~-~~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 336 D-GVDGKAVARRLLNEHNIEVGGGLGEL-----------------------AGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp T-TCCHHHHHHHHHHHHCEECEECCGGG-----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHhhCCEEEecCcccc-----------------------CCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 2 11234455555443 55555544211 158999995 6667777788888888765
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=236.29 Aligned_cols=301 Identities=19% Similarity=0.167 Sum_probs=200.7
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
+...++++.++++++.+ +.+++++| ++++ .++.++. ++||+|+++.++|++....+.. ++..|++++.++.+
T Consensus 68 ~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~ 146 (423)
T 3lvm_A 68 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLAPQ 146 (423)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEEEEeccC
Confidence 45688999999999987 45555555 5567 6666565 3799999999999875443332 36679999999886
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC-CCCCcCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK-SLPWGVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~-~~~~~~di~~~S~sK 205 (393)
|++++++.+.+++++|++++|+||||.++|+++|.++|+++ |++||+||+|+.+.... ....++|+++.|+||
T Consensus 147 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK 225 (423)
T 3lvm_A 147 RNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR-GIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK 225 (423)
T ss_dssp TTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHH-TCEEEEECTTTTTTSCCCTTTSCCSEEEEESTT
T ss_pred CCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHc-CCEEEEEhhhhcCCCCcChhhcCCCEEEechHH
Confidence 89999999998999999999999999999999999999999 99999999998755422 223578999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHh
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~ 274 (393)
++ |++| +|+++++ +++.+.+..... ......+......+...++. +....++..++.+.+.+.|+
T Consensus 226 ~~-g~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 226 IY-GPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp TT-SCSS--CEEEEEC-BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hc-CCCC--eEEEEEe-ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 6888 8999987 444443322111 11122333333222222222 34456666777788888888
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCCh
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK 354 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~ 354 (393)
.++++..+..+. ...++++.|.+.+ .....+.+.+.. +.+..|..++..... +.
T Consensus 302 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~l~~~l~~--i~v~~g~~~~~~~~~--------~~ 355 (423)
T 3lvm_A 302 DIEEVYLNGDLE--------------HGAPNILNVSFNY--VEGESLIMALKD--LAVSSGSACTSASLE--------PS 355 (423)
T ss_dssp TSTTEEEESCST--------------TBCTTEEEEEETT--SCHHHHHHHTTT--EECBCCCC-----CC--------CC
T ss_pred cCCCEEEeCCcc--------------ccCCCeEEEEeCC--CCHHHHHHHHhh--heeccCccccCCCcc--------cc
Confidence 777654322111 1124677777743 223445555554 555555443321110 01
Q ss_pred hhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 355 ETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 355 ~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......|.. ++++||+++...++++++.+.++|+++.
T Consensus 356 ~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 356 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp HHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 111122332 4899999998888888888888777553
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=233.53 Aligned_cols=318 Identities=12% Similarity=0.118 Sum_probs=212.0
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c-EEEeccHHH-HH-HHHHHhcCCCCeEEE
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H-GLCYSSGLG-AV-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i~~~~G~~-al-~~~~~~~~~gd~vl~ 102 (393)
..+.+|..+++.+.+++.+.... .|+.++.+...++|+++|+++|.+ + .+++++|++ ++ .++..++++||+|++
T Consensus 21 ~~~~~p~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~ 98 (396)
T 2ch1_A 21 MMGPGPSNCSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLI 98 (396)
T ss_dssp CCSSSSCCCCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEE
T ss_pred eecCCCCCCCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEE
Confidence 36788888888888877665322 243333345789999999999987 4 687777655 57 677778899999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcE
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDIL 176 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 176 (393)
++|+|++. .+...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.++|+++|.++|+++ |++
T Consensus 99 ~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~~ 175 (396)
T 2ch1_A 99 AVNGIWAE--RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQH-DCL 175 (396)
T ss_dssp EESSHHHH--HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT-TCE
T ss_pred EcCCcccH--HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHc-CCE
Confidence 99999863 1234667889999998863 78999998877 799999999999999999999999999999 999
Q ss_pred EEEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH--------------HHhcC----
Q psy12791 177 LVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL--------------QNSMG---- 237 (393)
Q Consensus 177 livDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~---- 237 (393)
+|+||+|+.+.....+ ..+.|+++.|++|+++|++| +|+++++ +++++.++.. ...++
T Consensus 176 li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (396)
T 2ch1_A 176 LIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG--ITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 252 (396)
T ss_dssp EEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS--CEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSS
T ss_pred EEEEccccccCCccchhhcCcCEEEEcCCccccCCCC--eEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcc
Confidence 9999999854322122 24579999999998877777 5999997 6777766421 01111
Q ss_pred -----CCCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceE
Q psy12791 238 -----VVPSPFDCWLVTRGL-----KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 238 -----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
...+...+..+...+ +.+...+++..++++.+.+.|+++ ++. +..+. .. ...+.++
T Consensus 253 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~ 318 (396)
T 2ch1_A 253 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLD-IFVKD----PR--------HRLPTVT 318 (396)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC-BSSCS----GG--------GBCTTEE
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCe-eccCC----cc--------ccCCceE
Confidence 123333333222222 234455666777778888888765 332 11111 00 0123578
Q ss_pred EEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHH
Q psy12791 308 SFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQ 385 (393)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~ 385 (393)
+|.++. ......+.+.|.. .++.+..|..+ ..++++|+++ ++..++++++.+.+
T Consensus 319 ~~~~~~-~~~~~~~~~~L~~~~gi~v~~g~~~-----------------------~~~~~iRi~~~~~~~~~e~i~~~~~ 374 (396)
T 2ch1_A 319 GIMIPK-GVDWWKVSQYAMNNFSLEVQGGLGP-----------------------TFGKAWRVGIMGECSTVQKIQFYLY 374 (396)
T ss_dssp EEECCT-TCCHHHHHHHHHHHHCBCCBCCCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred EEEcCC-CCCHHHHHHHHHHhCCEEEecCccc-----------------------cCCCEEEEECCCCcCCHHHHHHHHH
Confidence 888741 1123344444432 24444443210 0258999999 66666777777777
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
+|+++
T Consensus 375 ~l~~~ 379 (396)
T 2ch1_A 375 GFKES 379 (396)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=231.49 Aligned_cols=284 Identities=12% Similarity=0.121 Sum_probs=199.8
Q ss_pred chHHHHHHHHHHHhCCC--cEEEeccH-HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSSG-LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+...++++.+++++|.+ +.+++++| ++++ .++.++.++ +.+++..+.|.. .+...++..|++++.++.+
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~---~~~~~~~~~g~~~~~v~~~~~~ 118 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSK---RFYEFAGELGREAYKEEAAFGK 118 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHH---HHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHH---HHHHHHHHhCCCeEEEecCCCC
Confidence 45678999999999874 55666555 4557 777778777 555555555541 2344567789999998764
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccC
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNG 209 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G 209 (393)
|+++++ +++++++|++++|+||||.++|+++|.++|+++||+++|+|++|+.+....+.. ..|+++.|+||+++|
T Consensus 119 ~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~-~~d~~~~s~~K~~~~ 195 (362)
T 3ffr_A 119 GFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT-KIDSVFFSVQKCFGL 195 (362)
T ss_dssp CCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT-SCSEEEEETTSTTCC
T ss_pred CCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh-HCcEEEEecccccCC
Confidence 677777 677899999999999999999999999999998789999999998655322222 289999999999966
Q ss_pred CCCceEEEEEecChHHHHHHHHHHHh---------------------cCCCCCHHHHHHHHhccC-----CHHHHHHHHH
Q psy12791 210 HSDVVMGATVTNDDSLQARLKFLQNS---------------------MGVVPSPFDCWLVTRGLK-----TLPCRLKEHE 263 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 263 (393)
++| +|+++.+ +++++.++..... .....+......+...++ .+...+++..
T Consensus 196 ~~G--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 272 (362)
T 3ffr_A 196 PAG--LGVWILN-DRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE 272 (362)
T ss_dssp CSC--CEEEEEE-HHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCc--eEEEEEC-HHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 899 6888887 7888877654430 022233333222222222 2456677778
Q ss_pred HHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccC
Q psy12791 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 264 ~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
++++.+.+.|+++|++.. ..+. .. ...+.+++|.+++ ....+.+.|...++.+..|..+
T Consensus 273 ~~~~~l~~~L~~~~g~~~-~~~~----~~--------~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~----- 331 (362)
T 3ffr_A 273 EKAALINTYIESSKVFSF-GVED----AK--------LRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS----- 331 (362)
T ss_dssp HHHHHHHHHHHHCSSEEE-SSSC----GG--------GBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----
T ss_pred HHHHHHHHHHHHccCcee-ccCC----hh--------hcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----
Confidence 888899999998877542 1111 00 1124678898853 4556666666556666554210
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+++||+|++..+++++++++.++|+++.
T Consensus 332 ------------------~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 332 ------------------KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ------------------GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 125899999999999999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=231.70 Aligned_cols=302 Identities=15% Similarity=0.111 Sum_probs=200.4
Q ss_pred CCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 57 NNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
..+..+++++.+|+++|.+ +.+++++|++ ++ .++.++. ++||+|++++++|++....+. .++..|++++.++
T Consensus 41 ~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~~~~~v~ 119 (382)
T 4hvk_A 41 AREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIP 119 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCCEEEEec
Confidence 3456779999999999987 5677777766 57 6666666 899999999999987544332 3456799999998
Q ss_pred CC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEcc
Q psy12791 130 LR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSL 203 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~ 203 (393)
.+ |++++++.+++++++|++++|+||||.++|+++|.++|+++ |+ +|+|++|+.+....... .++|+++.|+
T Consensus 120 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~ 197 (382)
T 4hvk_A 120 VGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGK-AA-LHIDATASVGQIEVDVEKIGADMLTISS 197 (382)
T ss_dssp BCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSS-SE-EEEECTTTBTTBCCCHHHHTCSEEEEES
T ss_pred cCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHc-CE-EEEEhHHhcCCCCCCchhcCCCEEEEeH
Confidence 75 89999999998999999999999999999999999999999 99 99999998654322221 3689999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHH-------HhcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQ-------NSMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 272 (393)
||++ |++| +|+++++++. .++... .......+......+...+ +.+....++..++++.+.+.
T Consensus 198 ~K~~-g~~g--~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 198 NDIY-GPKG--VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp GGGT-SCTT--CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-CCCc--eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9987 6888 7777776332 111110 0112223333333222222 22344556666777788888
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSI 352 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~ 352 (393)
|+.++++. +..+. ....++++.|.+++ ...+.+.+.|...++.+..|..++.....
T Consensus 272 L~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~-------- 327 (382)
T 4hvk_A 272 VLKIEESY-LNGHP-------------EKRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKTLQ-------- 327 (382)
T ss_dssp HTTSTTEE-ECSCS-------------SSBCTTEEEEEETT--CCHHHHHHHHHHTTCBCBCC--------C--------
T ss_pred HhcCCCeE-EeCCc-------------cccCCCEEEEEECC--CCHHHHHHHHHHCCEEEeeCCccCCCCCc--------
Confidence 88776654 22111 01123578888853 12334455555456777776554322111
Q ss_pred ChhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 353 PKETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 353 ~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.......|.. +++||++++..+++++++.+.++|+++.
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11112223332 5899999999888888888888877653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=227.49 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=202.8
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~ 134 (393)
.+...++|+++|++++.++++++++|++++ .++..+ ..+||+|+++.|+|++. ...++..|++++.++.+|++
T Consensus 90 ~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~d~~ 165 (401)
T 2bwn_A 90 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASM----IEGIKRNAGPKRIFRHNDVA 165 (401)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHH----HHHHHHSCCCEEEECTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHH----HHHHHHcCCeEEEEcCCCHH
Confidence 357899999999999998999999999975 444333 35899999999999863 44456789999999998888
Q ss_pred HHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-CC------CC--CcCcEEEE
Q psy12791 135 NLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-KS------LP--WGVDIVLY 201 (393)
Q Consensus 135 ~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~~------~~--~~~di~~~ 201 (393)
++++.+. +++++|++++|+||||.++|+++|.++|+++ |+++|+||+|+.+.+. .. .. ...+++++
T Consensus 166 ~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~ 244 (401)
T 2bwn_A 166 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG 244 (401)
T ss_dssp HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred HHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHc-CCEEEEeccccccccCCCCceeeeccCccccCcEEEe
Confidence 8888775 5789999999999999999999999999999 9999999999954321 11 01 13589999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHH---HhccCCH--HHHHHHHHHHHHHHHHHHh
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLV---TRGLKTL--PCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~~l~ 274 (393)
|+||++ |.+| ||++++ +++.+.++.... .+....++..+..+ ++.++.. ...+++..++.+.+.+.|+
T Consensus 245 s~sK~~-~~~G---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 319 (401)
T 2bwn_A 245 TLAKAY-GVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLK 319 (401)
T ss_dssp ESSSTT-CSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhc-cCCC---CEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999 5666 999987 888887764322 22222334443322 2333443 4566677777888888887
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCC
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
+. ++. +..+ .++++++.++ +......+.+.+. ..++.+..+..+.. +
T Consensus 320 ~~-g~~-~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~~~~~~~---~--------- 367 (401)
T 2bwn_A 320 AL-GMP-IIDH-----------------GSHIVPVVIG-DPVHTKAVSDMLLSDYGVYVQPINFPTV---P--------- 367 (401)
T ss_dssp HH-TCC-BCCC-----------------SSSCEEEECC-CHHHHHHHHHHHHHHHCEECCEECTTTS---C---------
T ss_pred HC-CCc-ccCC-----------------CCCeEEEEeC-ChHHHHHHHHHHHhcCCEEEeecCCCCC---C---------
Confidence 64 322 1111 1458899884 3345556666663 44555544321100 0
Q ss_pred hhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 354 ~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+++|+|++..+++++++.+.++|+++.
T Consensus 368 --------~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 368 --------RGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp --------TTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred --------CCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 013689999999999999999999998764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=228.99 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=212.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.+...++|+++|++++.++.+++++|++++ .++..+ +++||+|+++.|+|++ +...++..|++++.++.+
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIA----SVGAIVQAGATPVLVDSENGY 111 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH----HHHHHHHTTCEEEEECBCTTS
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHH----HHHHHHHcCCEEEEEecCCCC
Confidence 5688999999999999999999999999998 777777 8999999999999986 455677889999999886
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc--CCCCCcCcEEEEccc--c
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ--KSLPWGVDIVLYSLT--K 205 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~--~~~~~~~di~~~S~s--K 205 (393)
|++++++.+++++++|+ |+||||.+.|+++|.++|+++ |+++|+|++|+.+... .+.....|+++.|+| |
T Consensus 112 ~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~-~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K 187 (374)
T 3uwc_A 112 VIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKH-NLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK 187 (374)
T ss_dssp SBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred CcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHc-CCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence 89999999988888887 899999999999999999999 9999999999975432 122223699999977 9
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFL 273 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 273 (393)
++ |.+|. +|+++++++++.+.++..... .........+.+....++.+....++..++.+.+.+.|
T Consensus 188 ~l-~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 188 NL-NVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp SS-CCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred cC-Cccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 46564 999998877888877655421 11123556666666666667767777777778888888
Q ss_pred hhCCC-cceEeCCCCCCCcchHHHhhhcCCCc--ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccccc--
Q psy12791 274 ESHPC-VKGVLHPGLPSHPNHELAKSQWSGTS--GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMT-- 348 (393)
Q Consensus 274 ~~~~~-~~~v~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~-- 348 (393)
+.++. +. .+..+.. ... ..+.+.. .+. +.+.+.|...++.+..+........+....
T Consensus 266 ~~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~-~~~---~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~ 327 (374)
T 3uwc_A 266 VDLSEFID---VPVRREG-----------VYHVFHIYVLRV-KYR---DQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLG 327 (374)
T ss_dssp GGGTTTEE---CCCCCTT-----------EECCCSSEEEEE-TTH---HHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGC
T ss_pred ccCCCeEE---eccCCCC-----------CceeeEEEEEEc-CCH---HHHHHHHHHCCCccccCCCCccccChhhhhcC
Confidence 77654 32 2221100 001 2244444 233 334444444455555543222222221110
Q ss_pred --CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 349 --HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 349 --~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+.... ...+.+||+++..+++++++.+.++|+++.
T Consensus 328 ~~~~~~~~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 328 YQQGDFPMAEK----HGEAVITLPAHPYLTEEEINYIIKKVREFY 368 (374)
T ss_dssp CCTTSCHHHHH----HHHHEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CccCCCccHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 001111111 114789999999999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=230.93 Aligned_cols=312 Identities=14% Similarity=0.074 Sum_probs=208.1
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhcCCCCeEEEcCC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLLSAGDHIISGDD 105 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~ 105 (393)
+.+|..+++.+.+++.+.+.. +.|. ...+...++|+++|+++|.+ +.+++++|++ ++ .++..++++||+|++++|
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~-~~~~-~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~ 83 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLH-HRTE-AAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 83 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCC-TTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCCCCCCCHHHHHHhccCCCC-ccCH-HHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeC
Confidence 456666666777666554321 1111 11245689999999999987 5677765555 57 777777899999999999
Q ss_pred CccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-CCcEEEE
Q psy12791 106 VYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVL 179 (393)
Q Consensus 106 ~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~liv 179 (393)
+|++.. +...++..|++++.++.+ |++++++ +++++|++++|+||||.++|+++|.++|+++ +|+++|+
T Consensus 84 ~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~ 158 (352)
T 1iug_A 84 GKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGA 158 (352)
T ss_dssp SHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEE
T ss_pred CchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEE
Confidence 998643 344556789999998874 5565554 5789999999999999999999999999997 3899999
Q ss_pred eCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHH---------HHHH---H--HhcCCCCCHHH
Q psy12791 180 DNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR---------LKFL---Q--NSMGVVPSPFD 244 (393)
Q Consensus 180 Dea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~---------~~~~---~--~~~~~~~~~~~ 244 (393)
|++|+.+...... ..+.|+++.|+||++.|++| +||++++ +++++. ++.. . .......+...
T Consensus 159 D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T 1iug_A 159 DMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINL 235 (352)
T ss_dssp ECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHH
T ss_pred ECCccccCcceeccccCeeEEEecCcccccCCCc--eeEEEEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHH
Confidence 9999854332122 13689999999997767777 7999997 666554 2211 1 11222333333
Q ss_pred HHHHHhcc----CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 245 CWLVTRGL----KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 245 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
...+...+ +.+...+++..++++.+.+.|+++ ++. +..+. ..+.+++|.++. ......
T Consensus 236 ~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~~~~~~~~~~-~~~~~~ 297 (352)
T 1iug_A 236 VLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLR-PVPKR---------------FSPAVAAFYLPE-GVPYAR 297 (352)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCE-ESCSS---------------BCTTCEEEECCT-TCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccccc---------------cCCeEEEEEcCC-CCCHHH
Confidence 32222211 225556777778888888888875 432 22110 125688888852 112344
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+.+...++.+..|.. + ..++++|++++..+++++++.+.++|+++.
T Consensus 298 ~~~~l~~~gi~v~~~~~------~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 298 VKEAFAQRGAVIAGGQG------P-----------------LKGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp HHHHHHTTTEECEECCG------G-----------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEeCCC------c-----------------cCCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 55555444665554431 0 025799999999888888888888887653
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=232.05 Aligned_cols=314 Identities=12% Similarity=0.045 Sum_probs=206.6
Q ss_pred CCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCc
Q psy12791 31 PPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVY 107 (393)
Q Consensus 31 ~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y 107 (393)
+|..+++.+.+++.+.+.. +.+ ........++|+++|+++|.+ +.+++++|++ ++ .++..++++||+|++++|+|
T Consensus 16 ~~~~~~~~v~~a~~~~~~~-~~~-~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~ 93 (392)
T 2z9v_A 16 GPVNAYPEVLRGLGRTVLY-DYD-PAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGV 93 (392)
T ss_dssp SCCCCCHHHHHHTTSCCCC-TTS-HHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSH
T ss_pred CCcCCCHHHHHHHhccccc-ccc-HHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCc
Confidence 4555666677666555332 111 111245788999999999986 6777766655 57 66777789999999999999
Q ss_pred cchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhc--CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEe
Q psy12791 108 GGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYI--KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 108 ~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l--~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livD 180 (393)
++.. +...++..|++++.++.+ |++++++.+ .+++++|++++|+||||.++|+++|.++|+++ |+++|+|
T Consensus 94 ~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~D 170 (392)
T 2z9v_A 94 YGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAH-GAYLIVD 170 (392)
T ss_dssp HHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHT-TCEEEEE
T ss_pred ccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHc-CCeEEEE
Confidence 8642 444556678899888864 789999988 45799999999999999999999999999999 9999999
Q ss_pred CccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH--------------------HhcCCC
Q psy12791 181 NTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ--------------------NSMGVV 239 (393)
Q Consensus 181 ea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~--------------------~~~~~~ 239 (393)
++|+.+.....+ ..+.|+++.|+||++.|++| +||++++ +++++.++... ......
T Consensus 171 ~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (392)
T 2z9v_A 171 AVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPG--LTMMGVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFT 247 (392)
T ss_dssp CTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSC--CEEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSC
T ss_pred cccccCCcccccccccceEEEecCcccccCCCc--eeEEEEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCC
Confidence 999864432122 23689999999998767888 5999997 78777765311 011122
Q ss_pred CCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 240 PSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
.+......+...++. +...+++..++++.+.+.|+++ ++. +..|. .. ...+.+++|.++.
T Consensus 248 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~- 312 (392)
T 2z9v_A 248 PSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLS-VWAAS----DS--------IASPTTTAVRTPD- 312 (392)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSSS----GG--------GBCTTEEEEECCT-
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCe-eccCC----cc--------ccCCceEEEECCC-
Confidence 333332222222222 3445666667777888888765 332 11111 00 0124678888841
Q ss_pred HHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.|... ++.+..|..+ ..++++|+|+ +...++++++.+.++|+++
T Consensus 313 ~~~~~~l~~~L~~~~gi~v~~g~~~-----------------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 313 GVDEKALRQAARARYGVVFSSGRGE-----------------------TLGKLTRIGHMGPTAQPIYAIAALTALGGA 367 (392)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEecCCCC-----------------------CCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 11233444544433 5555444321 0158999995 5467777777777777654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=230.54 Aligned_cols=304 Identities=15% Similarity=0.099 Sum_probs=209.1
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.+...++|+++|+++|.++.+++++|++++ .++..+ +++||+|+++.++|.++ ...++..|++++.++.+
T Consensus 34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~ 109 (373)
T 3frk_A 34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIAT----ALAVSYTGAKPIFVEPDIRT 109 (373)
T ss_dssp SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHH----HHHHHHHSCEEEEECEETTT
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHH----HHHHHHcCCEEEEEeccccc
Confidence 4688999999999999999999999999998 777777 89999999999999963 44566779999999875
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCc--CcEEEEccc--
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWG--VDIVLYSLT-- 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~--~di~~~S~s-- 204 (393)
|++++++.+++++++|+ |+||||.+.|+++|.++|+++ |+++|+|++|+.+........+ .|+++.||+
T Consensus 110 ~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 185 (373)
T 3frk_A 110 YNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY-NLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPA 185 (373)
T ss_dssp TEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred cCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc-CCEEEEECCcccCCEECCEeccccccEEEEeCcCC
Confidence 88999999988888888 778999999999999999999 9999999999875432221223 689999977
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhc------------CCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSM------------GVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (393)
|++ |.+| ++|+++++++++.++++...... ....++..+.+....++.+....++..++.+.+.+.
T Consensus 186 K~l-~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (373)
T 3frk_A 186 KNL-GSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAG 263 (373)
T ss_dssp SSS-CCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-Cccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 4545 38999998777888777655421 112356666665555566666666666777777777
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccC---
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTH--- 349 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~--- 349 (393)
|+..+ + ..+..+... ......+.+.. .+.+ .+.+.|...++.++.+......+.+.....
T Consensus 264 l~~~~-~---~~~~~~~~~---------~~~~~~~~~~~-~~~~---~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~ 326 (373)
T 3frk_A 264 INNPN-V---IIPVEADYA---------KHVWYTFVIRS-EKRD---ELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFK 326 (373)
T ss_dssp CCCTT-E---ECCCCCTTE---------ECCCSSEEEEE-SSHH---HHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCC
T ss_pred hccCc-e---EeccCCCCC---------ceeeEEEEEEe-CCHH---HHHHHHHHCCCCcccCcCCccccChHHHhcCCC
Confidence 76554 2 223211100 00012345555 2333 344444444555554432222222211110
Q ss_pred -CCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 350 -KSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 350 -~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++..+.. ..+.|||+++..+++++++.+.++|+++.
T Consensus 327 ~~~~~~~~~~----~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 327 TGNFPIAEKI----ANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp TTSSHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHH----HhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 011111111 14789999999999999999999998764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=231.64 Aligned_cols=315 Identities=13% Similarity=0.122 Sum_probs=210.4
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC---cEEEeccH-HHHH-HHHHHhcCCCCeEEEc
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK---HGLCYSSG-LGAV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~---~~i~~~~G-~~al-~~~~~~~~~gd~vl~~ 103 (393)
+.+|+.+++.+.+++.+.+. +.|..+..+...++|+++|+++|.+ +.+++++| ++++ .++..++++||+|++.
T Consensus 9 ~~gp~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~ 86 (366)
T 1m32_A 9 TPGPLTTSRTVKEAMLFDSC--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIV 86 (366)
T ss_dssp SSSSCCCCHHHHHTTCCCCC--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEE
T ss_pred cCCCcCCCHHHHHHHhhhhc--CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEE
Confidence 44477777888887766521 2222111267889999999999954 24555555 5567 7777788899998877
Q ss_pred C-CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC--CCcEEEEecCCCCcccccCHHHHHHHHHhCCCc
Q psy12791 104 D-DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP--NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175 (393)
Q Consensus 104 ~-~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 175 (393)
+ ++|++. +...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.++|+++|.++|+++ |+
T Consensus 87 ~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~ 162 (366)
T 1m32_A 87 SNGAYGAR---MVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRY-GK 162 (366)
T ss_dssp ESSHHHHH---HHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHH-TC
T ss_pred eCCCccHH---HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHc-CC
Confidence 6 555532 445567779899888763 78999988865 488999999999999999999999999999 99
Q ss_pred EEEEeCccCcccccCCCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH------------H---Hh---c
Q psy12791 176 LLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL------------Q---NS---M 236 (393)
Q Consensus 176 ~livDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~------------~---~~---~ 236 (393)
++|+||+|+.+.....+. .++|+++.|+||+++|+.| +||++++ +++++.++.. . .. .
T Consensus 163 ~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (366)
T 1m32_A 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 239 (366)
T ss_dssp EEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCC
T ss_pred EEEEECCccccCcCccccccCccEEEecCcccccCCCc--eEEEEEC-HHHHHhhcCCCCCccccHHHHHhhhcccCCCC
Confidence 999999998654322222 4689999999998866777 6999998 6776654321 0 00 0
Q ss_pred CCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 237 GVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
....+......+...++. +...+++..++.+.+.+.|+++ ++. +..+. . ...+.++++.
T Consensus 240 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~-----~--------~~~~~~~~~~ 304 (366)
T 1m32_A 240 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFN-TLLDD-----E--------LHSPIITAFY 304 (366)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCSSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCe-eccCc-----h--------hcCceEEEEE
Confidence 123444443333333322 3445666677778888888765 332 11110 0 0123578888
Q ss_pred EcCC-HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 311 VNGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 311 ~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
++.. ......+.+.+...++.+..|..+ .++++|++++..+++++++.+.++|++
T Consensus 305 ~~~~~~~~~~~~~~~l~~~gi~v~~~~~~------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 305 SPEDPQYRFSEFYRRLKEQGFVIYPGKVS------------------------QSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp CCCCTTCCHHHHHHHHHHTTEECEECCCS------------------------SSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred cCccCCCCHHHHHHHHHHCCEEEECCcCC------------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 8520 122344555554445555444321 157999999999999999999999987
Q ss_pred hh
Q psy12791 390 AC 391 (393)
Q Consensus 390 ~~ 391 (393)
+.
T Consensus 361 ~~ 362 (366)
T 1m32_A 361 AM 362 (366)
T ss_dssp HC
T ss_pred HH
Confidence 64
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-29 Score=235.65 Aligned_cols=318 Identities=15% Similarity=0.103 Sum_probs=199.5
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCC------CCccccCCCCchHHHHHHHHHHH--hC-CC-cEEEeccHHHH-HHH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPP------QGFEYSRSNNPTRRNLERCIASL--EE-AK-HGLCYSSGLGA-VTA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~------~~~~y~~~~~~~~~~lr~~la~~--~~-~~-~~i~~~~G~~a-l~~ 89 (393)
.++++ +.+.+++.+++.+.+++.+.+. ..+.|+ +..+..++|+++|++ .| .+ +.|++++|+++ +.+
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~--~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~ 110 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYG--PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFR 110 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCC--CTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCC--CCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHH
Confidence 35666 6677766666655554322110 122333 245778999999999 47 43 78888888776 644
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcE-EEeeCCCCHHHHHhhcC--CCCcEEEEecCCCCcccccC---HH
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE-VDFVDLRKIENLIKYIK--PNTKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~-v~~~~~~d~~~l~~~l~--~~~~~v~l~~p~nptG~~~~---~~ 163 (393)
+..++.+||+|+++.|+|++ +...++..|.+ ++.++.++-+.+...+. +++++|++++||||||.++| ++
T Consensus 111 ~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~ 186 (400)
T 3asa_A 111 LLSFFGPNQTVAIQDPSYPA----YLDIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLR 186 (400)
T ss_dssp HHHHHCSSCEEEEEESCCHH----HHHHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHcCCCCEEEECCCCcHH----HHHHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHH
Confidence 56667899999999999985 55566778988 88887752111111121 46899999999999999998 56
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccC--C--C-CC----cCcEEEEcccccccCCCCceEEEEEecChHH-------HH
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQK--S--L-PW----GVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-------QA 227 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~--~--~-~~----~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~-------~~ 227 (393)
+|.++|+++ |+++|+||+|..+.... + + .. +++++++|+||++ |++|+|+||++++ +++ ++
T Consensus 187 ~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~-~~~~~~~~~~~~ 263 (400)
T 3asa_A 187 AIVHYAIEH-EILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIP-QELTYADGHFVI 263 (400)
T ss_dssp HHHHHHHHT-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECC-TTCBCTTSCBHH
T ss_pred HHHHHHHHc-CCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeC-hhhccchhhhHH
Confidence 788889999 99999999999654321 1 1 11 2469999999999 6999999999997 555 45
Q ss_pred HHHH-HHHhcCCCCCHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 228 RLKF-LQNSMGVVPSPFDCWLVTRGLK--TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
.+.. .........+...+..+...++ .+...++.+.++.+.+.+.|++. ++. +..+. .+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~ 325 (400)
T 3asa_A 264 QDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFE-VFGGE----------------HA 325 (400)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCE-EEECS----------------SS
T ss_pred HHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCe-eeCCC----------------Cc
Confidence 4432 2222222344444433332221 33445666777788888888765 333 22121 14
Q ss_pred ceEEEE-EcCCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 305 GMLSFY-VNGGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 305 ~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
.++++. ++.. .....+.+.+ +..++.+..|..+... .++++|||+ ..++++++.
T Consensus 326 ~~~~~~~~~~~-~~~~~~~~~l~~~~gv~v~~g~~f~~~---------------------~~~~iRis~--~~~~e~i~~ 381 (400)
T 3asa_A 326 PYLWVKPTQAN-ISDRDLFDFFLREYHIAITPGIGFGRS---------------------GSGFVRFSS--LGKREDILA 381 (400)
T ss_dssp SEEEEECCCTT-CCTTTHHHHHHHHHSEECEEGGGGCGG---------------------GTTCEEEEC--CSCHHHHHH
T ss_pred eEEEEeccCCC-CCHHHHHHHHHHhCCEEEeChhHhCCC---------------------CCCEEEEEe--eCCHHHHHH
Confidence 678888 7421 1111233332 2225555555433210 157899994 456666776
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
+.++|+++
T Consensus 382 ~l~~l~~~ 389 (400)
T 3asa_A 382 ACERLQMA 389 (400)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 66666544
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=226.99 Aligned_cols=318 Identities=17% Similarity=0.033 Sum_probs=212.9
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCe--EEEc
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDH--IISG 103 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~--vl~~ 103 (393)
..++||+++++.+.+++.+.... ..| ++++...+|++++|++++.+..+++++|++++ .++..++.+||. |+++
T Consensus 19 ~~~~~~~g~~p~v~~ai~~~~~~-~~~--~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~ 95 (359)
T 3pj0_A 19 GNGPRNVGVLTEALQNIDDNLES-DIY--GNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYH 95 (359)
T ss_dssp SSSCCBHHHHHHHTTTSCTTCBC-CBT--TBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCccccCCCHHHHHHHHhhccc-Ccc--cCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 57889998888888888765322 223 24688999999999999998888999999887 777777788886 5555
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCCCcEEEEecCCCCc-ccccCHHHH---HHHHHhCCCc
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPNTKMVWIENPTNPL-MTVFDVKAI---SAVVKQHPDI 175 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~~~~v~l~~p~npt-G~~~~~~~l---~~l~~~~~~~ 175 (393)
.+.|...+ .........|++++.++.+ |+++++++ .+++++|++++|+||+ |.++|.+++ .++|+++ |+
T Consensus 96 ~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~-~~ 172 (359)
T 3pj0_A 96 PLSHLEIH-EQDGLKELQQITPLLLGTANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQ-GI 172 (359)
T ss_dssp TTCHHHHS-STTHHHHHHCCEEEECSCTTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHH-TC
T ss_pred ccceeeeh-hcchHHHhcCceEEecCCcCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHc-CC
Confidence 55543210 0011123468999998875 78999988 7789999999999998 799885555 9999999 99
Q ss_pred EEEEeCccCcccc---cCC---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC--CHHHHHH
Q psy12791 176 LLVLDNTFLTAYY---QKS---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP--SPFDCWL 247 (393)
Q Consensus 176 ~livDea~~~~~~---~~~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 247 (393)
+||+|++|..+.. ..+ +..+.|+++.|+||+++|+ + +||++++ +++++.++......+... ....+..
T Consensus 173 ~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~-~--gg~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a 248 (359)
T 3pj0_A 173 SLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI-A--GAILAGN-DDFVQEAKIWKRRYGGDLISLYPYILS 248 (359)
T ss_dssp EEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS-S--CEEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHH
T ss_pred EEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCc-c--eEEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 9999999875431 111 1135689999999998544 3 3888876 899998877655444322 2222222
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-HHHHHHHHhcC
Q psy12791 248 VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-EETRIFLESLL 326 (393)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 326 (393)
+...++....++++..++.+.+.+.|++++++.....|. .++++++.++... ...+.+.+.+.
T Consensus 249 ~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~ 312 (359)
T 3pj0_A 249 ADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVP----------------VSNMFHVYFENSADEIGAILTKIQD 312 (359)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSC----------------SSSEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCC----------------cceEEEEEecCccchhHHHHHHHHH
Confidence 222222222345566777888999999887764222222 2567888885332 34566667776
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++.+..|..+.. + ..+++|++++........+.+.++++.+.
T Consensus 313 ~~GV~v~~g~~~~~---~------------------~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 313 ETGVGISGYLQEKS---A------------------DVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp HHCEECCSCCEEEE---T------------------TEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred hcCcEecCCccccC---C------------------CceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 66777776643211 0 14789999986654444455555555543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=231.70 Aligned_cols=293 Identities=14% Similarity=0.117 Sum_probs=193.8
Q ss_pred CchHHHHHHHHHHHh------CCC-cEEEeccHHHH-H-HHHHHhcCCCC--------------eEEEc-CCCccchHHH
Q psy12791 58 NPTRRNLERCIASLE------EAK-HGLCYSSGLGA-V-TAVTHLLSAGD--------------HIISG-DDVYGGTYRY 113 (393)
Q Consensus 58 ~~~~~~lr~~la~~~------~~~-~~i~~~~G~~a-l-~~~~~~~~~gd--------------~vl~~-~~~y~~~~~~ 113 (393)
..+..++|+++|+++ +++ ++|++|+|+++ + .++..++++|| +|+++ .|+|..
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~---- 157 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIG---- 157 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccc----
Confidence 456789999999987 333 66777777664 7 66777888888 78876 899985
Q ss_pred HHH------hcccCCcEEEeeCCC----------CHHHHHhh---cCCCCcEEEEecCCCCcccccC---HHHHHHHHHh
Q psy12791 114 FAQ------VAPKIGLEVDFVDLR----------KIENLIKY---IKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQ 171 (393)
Q Consensus 114 ~~~------~~~~~g~~v~~~~~~----------d~~~l~~~---l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~ 171 (393)
+.. .+...|..++.++.+ |+++++++ +.+++++|++++||||||.++| +++|.++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~ 237 (444)
T 3if2_A 158 YSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKR 237 (444)
T ss_dssp GTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred hhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 333 345678888777632 78999988 6778999999999999999999 8889999999
Q ss_pred CCCcEEEEeCccCccccc---CC---CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHH
Q psy12791 172 HPDILLVLDNTFLTAYYQ---KS---LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDC 245 (393)
Q Consensus 172 ~~~~~livDea~~~~~~~---~~---~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
+ |+++|+||+|+.+... .. ...+.++++.|+||+ +.+|+|+||++++ +++.+.+.......+...++..+
T Consensus 238 ~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~--~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 313 (444)
T 3if2_A 238 Y-DIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI--GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGA 313 (444)
T ss_dssp T-TCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT--TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHH
T ss_pred C-CCEEEEECCCCCcccccccccccccCCCCEEEEechhhc--cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHH
Confidence 9 9999999999863321 11 123678999999995 4899999999987 88888887766554444444444
Q ss_pred HHHHhccCC--HH----H-HHHHHHHHHHHHHHHHhh-CCCcc-eEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 246 WLVTRGLKT--LP----C-RLKEHERGSIEVAKFLES-HPCVK-GVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 246 ~~~~~~~~~--~~----~-~~~~~~~~~~~l~~~l~~-~~~~~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
..+...++. +. . ..+.+.++.+.+.+.|.+ ++.+. .+..|. .+.++++.++....
T Consensus 314 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~ 377 (444)
T 3if2_A 314 AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----------------GAIFLWLWFKDLPI 377 (444)
T ss_dssp HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----------------BSSEEEEEETTCSS
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----------------ccEEEEEEcCCCCC
Confidence 443333322 11 1 233445566667777754 44421 122222 24678888852112
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
..+.+.+.+...++.+..|..|+....... .....++||||++. ++++++.+.+.|.+
T Consensus 378 ~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~-------------~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 435 (444)
T 3if2_A 378 STLDLYERLKAKGTLIVPSEYFFPGVDVSD-------------YQHAHECIRMSIAA--DEQTLIDGIKVIGE 435 (444)
T ss_dssp CHHHHHHHHHHTTEECEEGGGSCTTCCCTT-------------CSGGGSEEEEESSS--CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCeEEecchhhcCCCCCcc-------------cccCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 334455555555777777665432110000 00014799999998 55555555555544
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=231.97 Aligned_cols=315 Identities=11% Similarity=0.125 Sum_probs=208.1
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c-EE-EeccHHHHH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H-GL-CYSSGLGAV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i-~~~~G~~al-~~~~~~~~~gd~vl~~~ 104 (393)
...|...++.+.+.+.+.. ...|.....+...++++.+++++|.+ + .+ +.++|++++ .++..++++||+|++++
T Consensus 16 ~p~p~~~~~~v~~a~~~~~--~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~ 93 (416)
T 3isl_A 16 TPGPVEVDPRVLRVMSTPV--VGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPI 93 (416)
T ss_dssp SSSSCCCCHHHHHHTTSCC--CCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cCCCcCcCHHHHHHhcccC--CCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEec
Confidence 3445555555665554431 11222112355789999999999987 3 33 345566778 77778899999999999
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
++|++.. +...++..|++++.++.+ |+++++++++ +++++|++++|+||||.+.|+++|.++|+++ |+++|
T Consensus 94 ~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li 170 (416)
T 3isl_A 94 YGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE-DALFI 170 (416)
T ss_dssp SSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT-TCEEE
T ss_pred CCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc-CCEEE
Confidence 9997532 556678889999999886 8999999997 5899999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH------------------------
Q psy12791 179 LDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ------------------------ 233 (393)
Q Consensus 179 vDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~------------------------ 233 (393)
+|++|+.+...... ..++|+++.|+||++.|++| +|+++++ +++++.+....
T Consensus 171 ~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g--~g~~~~~-~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~ 247 (416)
T 3isl_A 171 VDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSG--MAPITYN-ERVADVIAARKKVERGIATQADRAALSGNRPITSN 247 (416)
T ss_dssp EECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSS--EEEEEEC-HHHHHHHHTC------------------CCCCSCS
T ss_pred EECCccccCCCcchhhcCCCEEEecCccccCCCCC--eEEEEEC-HHHHHHhhccccccccccccccchhccCCCCCCcc
Confidence 99999865432222 24789999999998657777 8999997 78877775321
Q ss_pred --------H------hcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchH
Q psy12791 234 --------N------SMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHE 294 (393)
Q Consensus 234 --------~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~ 294 (393)
. ......+......+...++ .+...+++..++++.+.+.|++. ++. +..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-------- 317 (416)
T 3isl_A 248 YFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLR-LFGDD-------- 317 (416)
T ss_dssp TTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSCG--------
T ss_pred ccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eccCc--------
Confidence 0 0111223333222222221 14455666677778888888763 332 11111
Q ss_pred HHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 295 LAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
....+.++++.++. ......+.+.|... ++.+..|.. ...++++|++++.
T Consensus 318 -----~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gi~v~~g~~-----------------------~~~~~~iRi~~~~ 368 (416)
T 3isl_A 318 -----SCKMPVVTCVEIPG-GIDGESVRDMLLAQFGIEIASSFG-----------------------PLAGKIWRIGTMG 368 (416)
T ss_dssp -----GGBCTTEEEEECCT-TCCHHHHHHHHHHHHCEECBCCCS-----------------------TTTTTEEEEECCG
T ss_pred -----cccCCcEEEEeCCC-CCCHHHHHHHHHHhCCEEEecCCC-----------------------CCCCCEEEEeccc
Confidence 01124678888842 12233455554332 555554421 0126899999965
Q ss_pred CChHHH-HHHHHHHHHHh
Q psy12791 374 EGYTDL-IADLDQALRKA 390 (393)
Q Consensus 374 ~~~~~~-i~~l~~al~~~ 390 (393)
..++++ ++.+.++|+++
T Consensus 369 ~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 369 YSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp GGCSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 544444 77777777654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=230.58 Aligned_cols=311 Identities=14% Similarity=0.094 Sum_probs=208.5
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCC--chHHHHHHHHHHHhCCC---cEEEeccHHH-HH-HHHHHhcCCCCeEE
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNN--PTRRNLERCIASLEEAK---HGLCYSSGLG-AV-TAVTHLLSAGDHII 101 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~~lr~~la~~~~~~---~~i~~~~G~~-al-~~~~~~~~~gd~vl 101 (393)
+.+|..+++.+.+++.+.+.. + +++. ....++|+++|+++|.+ +.+++++|++ ++ .++..+++ |+|+
T Consensus 5 ~~gp~~~~~~v~~a~~~~~~~-~---~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl 78 (353)
T 2yrr_A 5 TPGPTPIPERVQKALLRPMRG-H---LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVL 78 (353)
T ss_dssp SSSSCCCCHHHHGGGGSCCCC-T---TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEE
T ss_pred CCCCCCCCHHHHHHHhccccc-c---cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEE
Confidence 456777777777777665432 2 2222 44789999999999984 6787777755 57 55555555 8999
Q ss_pred EcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCc
Q psy12791 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDI 175 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 175 (393)
+++++|++. .+...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.++|+++|.++|+++ |+
T Consensus 79 ~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~ 155 (353)
T 2yrr_A 79 VLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEA-GA 155 (353)
T ss_dssp EEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHH-TC
T ss_pred EEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHc-CC
Confidence 999998864 2455667789999998864 78999998877 799999999999999999999999999999 99
Q ss_pred EEEEeCccCcccccCCCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH----------HH---H--HhcCCC
Q psy12791 176 LLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK----------FL---Q--NSMGVV 239 (393)
Q Consensus 176 ~livDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~----------~~---~--~~~~~~ 239 (393)
++|+|++|+.+....++. .+.|+++.|++|+++|++| +||++++ +++++.++ .. . ......
T Consensus 156 ~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 2yrr_A 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHT 232 (353)
T ss_dssp EEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSC
T ss_pred eEEEEcCcccccccccccccCceEEEecCcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCC
Confidence 999999997543211111 3579999999998767888 7999998 77776553 00 1 111223
Q ss_pred CCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 240 PSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
.+......+...++. +...+++..++++.+.+.|++. ++. +..+. ...+.+++|.++.
T Consensus 233 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--------------~~~~~~~~~~~~~- 295 (353)
T 2yrr_A 233 TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFR-PYPKA--------------SPLPTVLVVRPPE- 295 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCE-ESCSS--------------SBCTTEEEEECCT-
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCc-cccCc--------------cCCCeEEEEECCC-
Confidence 344333322222222 4445666777788888888775 432 21111 0124567888741
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH-HHHHHHHHhh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA-DLDQALRKAC 391 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~-~l~~al~~~~ 391 (393)
....+.+.+.+...++.+..|..+ ..++++|+|++...++++++ .+.++|+++.
T Consensus 296 ~~~~~~~~~~l~~~gi~v~~g~~~-----------------------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 296 GVDADRLVRALYAEGVAVAGGIGP-----------------------TRGQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp TCCHHHHHHHHHHTTEECEECCGG-----------------------GTTTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEeCCccc-----------------------cCCCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 112334555554445555554321 01578999997666666666 8888887654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=235.97 Aligned_cols=306 Identities=16% Similarity=0.132 Sum_probs=192.0
Q ss_pred cCCCCchHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhc----CCCC-eEEEcCCCccchHHHHHHhcccCCcEE
Q psy12791 54 SRSNNPTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLL----SAGD-HIISGDDVYGGTYRYFAQVAPKIGLEV 125 (393)
Q Consensus 54 ~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~----~~gd-~vl~~~~~y~~~~~~~~~~~~~~g~~v 125 (393)
+++..+...++++.+|+++|.+ +.+++++|++ ++ .++..++ ++|| +|+++.++|++....+.. +...|+++
T Consensus 58 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~g~~~ 136 (400)
T 3vax_A 58 GIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGRGFEV 136 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhcCCeE
Confidence 3333456789999999999987 5666666655 57 6666666 8999 999999999876544443 35679999
Q ss_pred EeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEE
Q psy12791 126 DFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIV 199 (393)
Q Consensus 126 ~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~ 199 (393)
+.++.+ |++++++++.+++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... .. .|++
T Consensus 137 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~-~~~li~D~a~~~~~~~~~~~~~-~d~~ 214 (400)
T 3vax_A 137 DFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRAT-PTYLHVDAAQGYGKVPGDLTTP-IDMI 214 (400)
T ss_dssp EEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTS-SCEEEEECTTTTTTSGGGGGSC-CSEE
T ss_pred EEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhc-CCEEEEEhhhhcCCCCcChhhc-CcEE
Confidence 999886 89999999998999999999999999999999999999999 9999999999865432221 12 8999
Q ss_pred EEcccccccCCCCceEEEEE-ecChHHH---HHHHHHH-------HhcCCCCCHHHHHHHHhcc----CCHHHHHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATV-TNDDSLQ---ARLKFLQ-------NSMGVVPSPFDCWLVTRGL----KTLPCRLKEHER 264 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~-~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 264 (393)
+.|+||++ |++| +|+++ ++++++. ..+.... .......+......+...+ +.+...+++..+
T Consensus 215 ~~s~~K~~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 291 (400)
T 3vax_A 215 SISGHKIG-APKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQD 291 (400)
T ss_dssp EEETGGGT-SCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred EEeHHHhC-CCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999976 6777 77777 7642221 1111100 1112233333333222222 234556666677
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
+++.+.+.|+ .+++. +..+. ....++++.+.+++ ...+.+.+.|. .++.+..|..++.....
T Consensus 292 ~~~~l~~~L~-~~~~~-~~~~~-------------~~~~~~~~~~~~~~--~~~~~l~~~L~-~gi~v~~g~~~~~~~~~ 353 (400)
T 3vax_A 292 LRSRLLAGLA-STSFQ-VNGDQ-------------DHVVPHILNLSFED--VDAEAFLVTLK-DLVAVATGSASTSASFT 353 (400)
T ss_dssp HHHHHHHHHT-TTTCE-ECSCT-------------TSBCTTEEEEECTT--CCHHHHHHHHH-HHHHHTTTTEEEEEEEC
T ss_pred HHHHHHHhhC-CCCEE-EeCCc-------------ccCCCCEEEEEeCC--CCHHHHHHHHh-cCcEEEecccccCCCCC
Confidence 7778888887 66543 22111 01124678888753 23445566666 67877777655432111
Q ss_pred ccccCCCCChhhHhhcCCC----CCeEEEEe-cCCChHHHHHHHHHHHHHhh
Q psy12791 345 AEMTHKSIPKETRDALGIT----DNLVRLSV-GVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~----~~~iRls~-~~~~~~~~i~~l~~al~~~~ 391 (393)
+.......|.. +++||||+ +..+++++++.+.++|+++.
T Consensus 354 --------~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 354 --------PSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLK 397 (400)
T ss_dssp --------CHHHHHTTTCCHHHHTSEEEEEEEEC------------------
T ss_pred --------ccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence 11122223333 48999999 99999988999888887764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-31 Score=249.44 Aligned_cols=317 Identities=16% Similarity=0.157 Sum_probs=211.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh----C--C-CcEEEeccHHHH-H-HHHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE----E--A-KHGLCYSSGLGA-V-TAVTH 92 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~----~--~-~~~i~~~~G~~a-l-~~~~~ 92 (393)
+++| +.+.+++.+++.+.+++.+.+... ...|+++ ..++|+++|+++ | . ++.+++++|+++ + .++..
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~ 108 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL--VYGYTYA-SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQA 108 (392)
Confidence 5567 677778888888888776654321 2233344 778999998875 3 2 267888888665 7 66777
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcC-CCCcEEEEecCCCCcccccC--
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIK-PNTKMVWIENPTNPLMTVFD-- 161 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~-- 161 (393)
++++||+|+++.|+|++ +...++..|.+++.++.+ |++++++.+. +++++|++++|+||||.+++
T Consensus 109 ~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 184 (392)
T 3b1d_A 109 FTKEGEAVLINSPVYPP----FARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWERE 184 (392)
Confidence 78899999999999985 556677889998888762 6778888887 57899999999999999997
Q ss_pred -HHHHHHHHHhCCCcEEEEeCccCcccccC----CC----C--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 -VKAISAVVKQHPDILLVLDNTFLTAYYQK----SL----P--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 -~~~l~~l~~~~~~~~livDea~~~~~~~~----~~----~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ |+++|+||+|..+.+.. ++ . .+.+++++|+||++ |++|+|+||++++++++++.++
T Consensus 185 ~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~ 262 (392)
T 3b1d_A 185 VLEQIGHLCQKH-HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPTLCAQFK 262 (392)
Confidence 88899999999 99999999999865321 11 1 34569999999999 6899999999997566888877
Q ss_pred HHHHhcC-CCCCHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 231 FLQNSMG-VVPSPFDCWLVTRGLKT----LPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 231 ~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
.....++ ...++..+..+...++. +...++...++.+.+.+.|++ +|++..+ .+ .+
T Consensus 263 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-----------------~~ 324 (392)
T 3b1d_A 263 HQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KP-----------------QG 324 (392)
Confidence 6555442 22344444433333322 233344455566666666665 4443211 11 13
Q ss_pred ce-EEEEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 305 GM-LSFYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
++ +|+.++........+.+.+. ..++.+..|..+.. ..++++|++++.. +++++.
T Consensus 325 ~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~--~e~i~~ 381 (392)
T 3b1d_A 325 TYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS---------------------EGELHARLNIAAP--KSLVEE 381 (392)
Confidence 33 46777321123455666663 45666665544310 1257899998863 444554
Q ss_pred HHHHHHH
Q psy12791 383 LDQALRK 389 (393)
Q Consensus 383 l~~al~~ 389 (393)
..+.|++
T Consensus 382 ~l~~l~~ 388 (392)
T 3b1d_A 382 ICKRIVC 388 (392)
Confidence 4444443
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=226.58 Aligned_cols=295 Identities=15% Similarity=0.124 Sum_probs=190.0
Q ss_pred CchHHHHHHHHHHHh------CCC-cEEEeccHHHH-H-HHHHHhcCCCC-----eEEEc-CCCccchHHHHHH--hccc
Q psy12791 58 NPTRRNLERCIASLE------EAK-HGLCYSSGLGA-V-TAVTHLLSAGD-----HIISG-DDVYGGTYRYFAQ--VAPK 120 (393)
Q Consensus 58 ~~~~~~lr~~la~~~------~~~-~~i~~~~G~~a-l-~~~~~~~~~gd-----~vl~~-~~~y~~~~~~~~~--~~~~ 120 (393)
..+..+||+++|+++ +.+ +.|++|+|+++ + .++..++++|| +|+++ .|+|++....... ....
T Consensus 74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 456889999999987 343 67777777665 7 67777888987 89997 9999852211100 1223
Q ss_pred CCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc--
Q psy12791 121 IGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ-- 189 (393)
Q Consensus 121 ~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~-- 189 (393)
.+..+..++.+ |+++++ +.+++++|++++||||||.++| +++|.++|+++ |+++|+||+|+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~De~~~~~~~~~~ 230 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH-NIPLVIDNAYGVPFPGII 230 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTTTCCB
T ss_pred ccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEeCCCcccccccc
Confidence 45566666543 677776 6678999999999999999999 88899999999 9999999999863321
Q ss_pred ----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC--CHHH-----H
Q psy12791 190 ----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK--TLPC-----R 258 (393)
Q Consensus 190 ----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~ 258 (393)
.+...+.++++.|+|| + +.+|+|+||++++ +++.+.+......+....++..+..+...++ .+.. .
T Consensus 231 ~~~~~~~~~~~~i~~~s~sK-~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 307 (417)
T 3g7q_A 231 FSEARPLWNPNIILCMSLSK-L-GLPGSRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVI 307 (417)
T ss_dssp CSCCCCCCCTTEEEEEESGG-G-TCTTSCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTH
T ss_pred ccccccCCCCCEEEEEechh-c-cCCCcceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHH
Confidence 1112467899999999 5 5899999999997 8999988877666555555555444433332 2221 2
Q ss_pred HHHHHHHHHHHHHHHhh-CCCc-ceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCC
Q psy12791 259 LKEHERGSIEVAKFLES-HPCV-KGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~-~~~~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
.+.+.++.+.+.+.|++ ++.+ ..+..|. .+.++++.++......+.+.+.+...++.+..|.
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~ 371 (417)
T 3g7q_A 308 KPFYYQRVQQTIAIIRRYLSEERCLIHKPE----------------GAIFLWLWFKDLPITTELLYQRLKARGVLMVPGH 371 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTTCEEECCC----------------BSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCceeeCCC----------------cceEEEEEcCCCCCCHHHHHHHHHHCCEEEECch
Confidence 33445666677777765 4432 1222232 2467888885311233445555555567777665
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.|+...... . +..++++|||++. ++++++.+.+.|.++
T Consensus 372 ~f~~~~~~~------~--------~~~~~~iRis~~~--~~~~i~~~~~~l~~~ 409 (417)
T 3g7q_A 372 YFFPGLDKP------W--------PHTHQCMRMNYVP--EPDKIEAGVKILAEE 409 (417)
T ss_dssp GGCTTBSSC------C--------GGGGGEEEEESCS--CHHHHHHHHHHHHHH
T ss_pred hhCCCCccc------c--------ccCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 543211000 0 0014799999996 555555555555443
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=227.76 Aligned_cols=333 Identities=17% Similarity=0.144 Sum_probs=219.1
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCe
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDH 99 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~ 99 (393)
+++| +++.+++. +.+.+++.+.+.. ..|. +.+...++|+++|++++.++.+++++|++++ .++..+ +++||+
T Consensus 31 ~~id~~~~~~~~~--~~v~~a~~~~~~~-~~y~--~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~ 105 (399)
T 2oga_A 31 PFLDLKAAYEELR--AETDAAIARVLDS-GRYL--LGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDE 105 (399)
T ss_dssp CSCCHHHHHHHTH--HHHHHHHHHHHHH-TCCS--SSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred cccccCcCCCCCC--HHHHHHHHHHHhc-CCCC--CchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCE
Confidence 5667 66666653 3444443322111 1222 3477899999999999998899999998888 777777 889999
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCC
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP 173 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 173 (393)
|+++.|+|++ +...++..|++++.++.+ |++++++.+++++++|+ |+||||.+.|+++|.++|+++
T Consensus 106 vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~- 177 (399)
T 2oga_A 106 VIVPSHTYIA----SWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRH- 177 (399)
T ss_dssp EEEESSSCTH----HHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH-
T ss_pred EEECCCccHH----HHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHc-
Confidence 9999999986 445567789999998763 78999999988888887 678999999999999999999
Q ss_pred CcEEEEeCccCcccccCCCCCc--CcEEEEcc--cccccCCCCceEEEEEecChHHHHHHHHHHHhc----------C--
Q psy12791 174 DILLVLDNTFLTAYYQKSLPWG--VDIVLYSL--TKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM----------G-- 237 (393)
Q Consensus 174 ~~~livDea~~~~~~~~~~~~~--~di~~~S~--sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~----------~-- 237 (393)
|+++|+|++|+.+........+ .|+++.|+ +|++ |++| |+||++++++++.+.++...... +
T Consensus 178 ~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~-~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~ 255 (399)
T 2oga_A 178 GLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNL-GCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTN 255 (399)
T ss_dssp TCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSS-CCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCB
T ss_pred CCEEEEECcccccCccCCeecccccCEEEEeCCCCccC-CcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccC
Confidence 9999999999876422111122 58999999 6999 6888 99999987688888876654321 1
Q ss_pred CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc-CCHH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN-GGAE 316 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 316 (393)
...++..++++...++.+....++..++.+.+.+.|++++++.....|. .+.+.++.+.+. .+.+
T Consensus 256 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 321 (399)
T 2oga_A 256 SRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAP--------------DTDPVWHLFTVRTERRD 321 (399)
T ss_dssp CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT--------------TEECCCSSEEEECSSHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCC--------------CCcceeEEEEEECCCHH
Confidence 2346677666666666666666666667777777777665543111111 001112224442 2333
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccC----CCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTH----KSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~----~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+.+.|...++.+..+........+..... ...+.... ...++|||+++..+++++++.+.++|+++.
T Consensus 322 ---~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 393 (399)
T 2oga_A 322 ---ELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAES----FARQVLSLPIGPHLERPQALRVIDAVREWA 393 (399)
T ss_dssp ---HHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHH----HHHHEEEECCSTTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 344444333554443221100000000000 00000000 013689999999999999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=233.42 Aligned_cols=317 Identities=10% Similarity=0.091 Sum_probs=211.4
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c-EEEec-cHHHHH-HHHHHhcCCCCeEEEc
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H-GLCYS-SGLGAV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i~~~-~G~~al-~~~~~~~~~gd~vl~~ 103 (393)
.+..|..+++.+.+++.+... ..+.........++++.++++++.+ + .++++ +|++++ .++..++++||+|+++
T Consensus 17 ~~pgp~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~ 94 (411)
T 3nnk_A 17 MGPGPINADPRVLRAMSSQLI--GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVP 94 (411)
T ss_dssp ESSSCCCCCHHHHHHHTSCCC--CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ecCCCCCCCHHHHHHhhcccc--ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEe
Confidence 356677777777766655421 1111101244688999999999987 3 35555 557778 7777889999999999
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
+|+|++.. +...++..|++++.++.+ |++++++.+++ ++++|++++|+||||.+.|+++|.++|+++ |+++
T Consensus 95 ~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~l 171 (411)
T 3nnk_A 95 VFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRY-DALF 171 (411)
T ss_dssp ECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHH-TCEE
T ss_pred cCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHc-CCEE
Confidence 99997532 566678889999999876 89999999976 899999999999999999999999999999 9999
Q ss_pred EEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-----------------------
Q psy12791 178 VLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ----------------------- 233 (393)
Q Consensus 178 ivDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~----------------------- 233 (393)
|+|++++.+...... ..++|+++.|+||++.|++| +|+++++ +++.+.++...
T Consensus 172 i~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~ 248 (411)
T 3nnk_A 172 YTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSG--TSPITLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNY 248 (411)
T ss_dssp EEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSS--EEEEEEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCST
T ss_pred EEECCcccCCcccchhccCCcEEEecCccccCCCCc--eEEEEEC-HHHHHHHhhcccccccccccccccccCCCCcccc
Confidence 999998865432222 24789999999998657776 8999997 78887775432
Q ss_pred -------------HhcCCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHH
Q psy12791 234 -------------NSMGVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHEL 295 (393)
Q Consensus 234 -------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~ 295 (393)
.......+......+...++ .+....++..++.+.+.+.|++. ++. +..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--------- 317 (411)
T 3nnk_A 249 FDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLE-TFGDL--------- 317 (411)
T ss_dssp TCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSCG---------
T ss_pred cchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eCCCc---------
Confidence 00111223333222222222 14455666677778888888764 322 11111
Q ss_pred HhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc-cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cC
Q psy12791 296 AKSQWSGTSGMLSFYVNGGAEETRIFLESLLI-FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GV 373 (393)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~ 373 (393)
....+.++++.++. ......+.+.+.. .++.+..|.. ...++++|+++ +.
T Consensus 318 ----~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~-----------------------~~~~~~iRi~~~~~ 369 (411)
T 3nnk_A 318 ----KHKMNNVLGVVIPQ-GINGDQARKLMLEDFGIEIGTSFG-----------------------PLHGKVWRIGTMGY 369 (411)
T ss_dssp ----GGBCSSEEEEECCT-TCCHHHHHHHHHHHHSEEEEECCG-----------------------GGTTTEEEEECCGG
T ss_pred ----ccccccEEEEECCC-CCCHHHHHHHHHHhcCeEEeCccC-----------------------CCCCCEEEEeCccC
Confidence 01135678888842 1122334443322 2444443310 01257999998 77
Q ss_pred CChHHHHHHHHHHHHHhh
Q psy12791 374 EGYTDLIADLDQALRKAC 391 (393)
Q Consensus 374 ~~~~~~i~~l~~al~~~~ 391 (393)
.+++++++.+.++|+++.
T Consensus 370 ~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 370 NARKDCVMTTLSALEAVL 387 (411)
T ss_dssp GCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 778888888888777653
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=224.76 Aligned_cols=300 Identities=16% Similarity=0.114 Sum_probs=198.6
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHH-HHH-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGL-GAV-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~-~al-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
+...++|+.+|+++|.+ +.+++++|+ +++ .++.++. ++||+|++++++|++...... .++..|++++.++.+
T Consensus 43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~ 121 (382)
T 4eb5_A 43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPVG 121 (382)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEeccC
Confidence 46788999999999986 566666654 557 6666666 899999999999986543332 345579999999874
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC---CcCcEEEEcc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP---WGVDIVLYSL 203 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~---~~~di~~~S~ 203 (393)
|++++++.+++++++|++++|+||||.++|+++|.++|+++ |++ |+|++|+.+.. +.. .+.|+++.|+
T Consensus 122 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~-i~D~a~~~g~~--~~~~~~~~~di~~~s~ 197 (382)
T 4eb5_A 122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGK-AAL-HIDATASVGQI--EVDVEKIGADMLTISS 197 (382)
T ss_dssp TTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTS-SEE-EEECTTTBTTB--CCCHHHHTCSEEEEET
T ss_pred CCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHC-CCE-EEEcchhcCCc--ccCccccCCCEEEeeh
Confidence 79999999988899999999999999999999999999999 999 99999985432 222 3679999999
Q ss_pred cccccCCCCceEEEEEecChH-HHHHHHH---HHHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhh
Q psy12791 204 TKYMNGHSDVVMGATVTNDDS-LQARLKF---LQNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~ 275 (393)
||++ |++| +||++++++. +...+.. .........+......+...++ .+...+++..++++.+.+.|++
T Consensus 198 sK~~-g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4eb5_A 198 NDIY-GPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp GGGT-CCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhc-CCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 9997 7888 7999887432 1111000 0011122333333222222222 2344556667777888888887
Q ss_pred CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 276 HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 276 ~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
++++. +..+. . ...+++++|.+++ ...+.+.+.+...++.+..|..++..... +..
T Consensus 275 ~~~~~-~~~~~--~-----------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~--------~~~ 330 (382)
T 4eb5_A 275 IEESY-LNGHP--E-----------KRLPNNVNVRFSY--IEGESIVLSLDMAGIQASTGSACSSKTLQ--------PSH 330 (382)
T ss_dssp STTEE-ECSCS--S-----------SBCTTEEEEEETT--SCHHHHHHHHHHHTCBCBCCCGGGTSSCC--------CCH
T ss_pred CCCeE-EeCCc--c-----------cCCCCEEEEEeCC--cCHHHHHHHHHHCCEEEeccccccCCCCc--------ccH
Confidence 66643 22111 0 0124678888853 12334555554446666666544321100 111
Q ss_pred hHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 356 TRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 356 ~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....|.+ ++++|++++..+++++++.+.++|+++
T Consensus 331 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 331 VLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp HHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11122332 589999999888888888887777654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=223.11 Aligned_cols=303 Identities=18% Similarity=0.170 Sum_probs=214.4
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.+...++|+++|+++|.++.+++++|++++ .++..+ +++||+|+++.++|++ +...++..|++++.++.+
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~----~~~~~~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVA----TAETVALLGAKPVYVDIDPRT 108 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHH----HHHHHHHcCCEEEEEecCCcc
Confidence 5688999999999999999999999999998 777777 8899999999999996 445567789999999875
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcC--cEEEEcc--c
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGV--DIVLYSL--T 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~--di~~~S~--s 204 (393)
|++++++++++++++|+ |+||||...++++|.++|+++ |+++|+|++|+.+........+. |+++.|| +
T Consensus 109 ~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~-~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKY-GIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHT-TCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHc-CCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence 78999999988888888 888999999999999999999 99999999998654322211222 9999997 8
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHh------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNS------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (393)
|++ |.+|. +|+++++++++.++++..... .....++..+.++...++.+....++..++.+.+.+.
T Consensus 185 K~l-~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~ 262 (367)
T 3nyt_A 185 APL-GCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS 262 (367)
T ss_dssp SSS-CCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcC-CCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 56675 999999778888888765432 2344667777777777777777777777888888888
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccc-cCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM-THKS 351 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~-~~~~ 351 (393)
|++.+ +. .+...... .....++.+.++ +.+ .+.+.|...++.++.+....+...+... ....
T Consensus 263 L~~~~-~~---~~~~~~~~---------~~~~~~~~~~~~-~~~---~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~ 325 (367)
T 3nyt_A 263 LKQVG-IG---TPFIEVNN---------ISVYAQYTVRMD-NRE---SVQASLKAAGVPTAVHYPIPLNKQPAVADEKAK 325 (367)
T ss_dssp HHHTT-CC---CCCCCTTE---------ECCCSSEEEECS-SHH---HHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCC
T ss_pred hccCC-ee---ccCCCCCC---------ceeeEEEEEEeC-CHH---HHHHHHHHCCCceeccCCCccccChhhhccCCC
Confidence 88763 21 11111000 001123555552 333 4444444445544443321222112111 1112
Q ss_pred CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 352 ~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++..... ..+.|||+++...++++++.+.+++++.
T Consensus 326 ~~~~~~~----~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 326 LPVGDKA----ATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChHHHHH----HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 2222221 2578999999999999999999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=226.02 Aligned_cols=247 Identities=14% Similarity=0.121 Sum_probs=166.0
Q ss_pred CCCCC-CCCCC-CCccCCeeeeCCCCCC-CCCccccCCCCchHHHHHHHHHHHh-CCC------cEE---EeccHHHHH-
Q psy12791 22 DQWRS-QCVIP-PIILSTTFKQNTPGQP-PQGFEYSRSNNPTRRNLERCIASLE-EAK------HGL---CYSSGLGAV- 87 (393)
Q Consensus 22 ~~~~~-~~~~~-p~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~lr~~la~~~-~~~------~~i---~~~~G~~al- 87 (393)
.+.++ +.+.+ .+..++.+.++..+.. ...+.|. +..+..+||+++|+++ +.. +.+ .+.+|+.++
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~ 118 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYA--PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALR 118 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCC--CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHH
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCccccccCC--CCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHH
Confidence 35566 55554 3333444444333321 1123333 3567789999999976 543 333 244444455
Q ss_pred HH---HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcC---CCCcEEEEecCCC
Q psy12791 88 TA---VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIK---PNTKMVWIENPTN 154 (393)
Q Consensus 88 ~~---~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~---~~~~~v~l~~p~n 154 (393)
.+ +..++++||+|++++|+|.+ +...++..|.+++.++.. |++++++.+. ++++++++++|||
T Consensus 119 ~~~~~~~~~~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~N 194 (409)
T 4eu1_A 119 IGGDLLNRFVANCNRIYGPDVGYPN----HESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHN 194 (409)
T ss_dssp HHHHHGGGTSSSCCEEEEESSCCTH----HHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCT
T ss_pred HHHHHHHHhcCCCCEEEEeCCCcHh----HHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 22 23456889999999999985 667778899999999872 7899998885 3466777799999
Q ss_pred CcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC------C-----CCCcCcEEEEcccccccCCCCceEEEE--
Q psy12791 155 PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK------S-----LPWGVDIVLYSLTKYMNGHSDVVMGAT-- 218 (393)
Q Consensus 155 ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~------~-----~~~~~di~~~S~sK~~~G~~G~r~G~~-- 218 (393)
|||.+++ +++|.++|+++ |+++|+||+|..+.+.. + ......++++|+||.+ |++|+|+||+
T Consensus 195 PtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~riG~~~~ 272 (409)
T 4eu1_A 195 PTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF-GLYGHRCGALHI 272 (409)
T ss_dssp TTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS-SCGGGCCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc-cCccCCceEEEE
Confidence 9999999 45589999999 99999999999765422 0 1124568999999999 6999999997
Q ss_pred EecChH----HHHHHHHHHHhcCCCCCHHHHHHHHhccCC----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 219 VTNDDS----LQARLKFLQNSMGVVPSPFDCWLVTRGLKT----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 219 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+..+++ +.+.++..........+...+..+...++. +...++++.++++.+.+.|++.
T Consensus 273 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (409)
T 4eu1_A 273 STASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC 344 (409)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666577 656565544333334445555544444332 3344556667777788888764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=224.84 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=183.0
Q ss_pred CchHHHHHHHHHHHhCC-------CcEEEe--ccHHHH-H-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 58 NPTRRNLERCIASLEEA-------KHGLCY--SSGLGA-V-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~-------~~~i~~--~~G~~a-l-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
..+..++|+++|++++. ++.|++ |+|+++ + .++..+ +++||+|++++|+|.+ +...++..|.
T Consensus 70 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~----~~~~~~~~g~ 145 (401)
T 7aat_A 70 IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGN----HTPIFRDAGL 145 (401)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTT----HHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchh----HHHHHHHcCC
Confidence 35678999999998753 456654 777665 6 444433 4899999999999986 5666788899
Q ss_pred EEEeeCCC-------CHHHHHhhc---CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 EVDFVDLR-------KIENLIKYI---KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 ~v~~~~~~-------d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+++.++.+ |++++++.+ .++++++++++||||||.+++ +++|.++|+++ |+++|+||+|..+.+..
T Consensus 146 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~ 224 (401)
T 7aat_A 146 QLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGD 224 (401)
T ss_dssp EEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSC
T ss_pred eeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccccccCCC
Confidence 99998863 566555544 357899999999999999998 77888899999 99999999999765432
Q ss_pred C-----------CCCcCcEEEEcccccccCCCCceEEEEEe--cChH----HHHHHHHHHHhcCCCCCHHHHHHHHhcc-
Q psy12791 191 S-----------LPWGVDIVLYSLTKYMNGHSDVVMGATVT--NDDS----LQARLKFLQNSMGVVPSPFDCWLVTRGL- 252 (393)
Q Consensus 191 ~-----------~~~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (393)
. ......++++|+||.+ |++|+|+||+++ .+++ +.+.++..........+...+..+...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (401)
T 7aat_A 225 INRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN 303 (401)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhcCCcEEEEecCCccc-ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence 1 1124679999999999 799999999987 3355 4444444433333344444444333222
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHH
Q psy12791 253 ---------KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLE 323 (393)
Q Consensus 253 ---------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
+.+...++++.++++.+.+.|+++..- +++ ... . ...+.++++.+ +.+....+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-----~~~------~~~-~--~~~~~~~~~~~--~~~~~~~ll~ 367 (401)
T 7aat_A 304 TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS-----HNW------QHI-T--DQIGMFCFTGL--KPEQVERLTK 367 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----SCC------HHH-H--HCCSSEEECCC--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCC------cee-c--CCcceEEecCC--CHHHHHHHHH
Confidence 123334556667777788888764200 000 000 0 11133455555 3455555544
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+ .+ ...+|+|++..++++ ++.+.++|+++.
T Consensus 368 ~~gi---~v-------------------------------~~~~Ris~~~~~~~~-i~~~~~~l~~~~ 400 (401)
T 7aat_A 368 EFSI---YM-------------------------------TKDGRISVAGVASSN-VGYLAHAIHQVT 400 (401)
T ss_dssp HHCE---EC-------------------------------CTTCEEEGGGCCTTT-HHHHHHHHHHHH
T ss_pred hCCE---ec-------------------------------cCCCeEEeccCChhh-HHHHHHHHHHHh
Confidence 3332 22 123699999877777 888888888764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=232.38 Aligned_cols=316 Identities=15% Similarity=0.102 Sum_probs=209.8
Q ss_pred CCCCC-CCCCCCCc---cCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC
Q psy12791 22 DQWRS-QCVIPPII---LSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS 95 (393)
Q Consensus 22 ~~~~~-~~~~~p~~---~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~ 95 (393)
..++| +++.+|.. .++.+.+++.+.+.. .+.+..++++...++++.+++++|.++.+++++|++++ .++..+..
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~ 115 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARR 115 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHH
Confidence 45667 66554433 344455443332211 12223356788999999999999966777777788887 55554443
Q ss_pred C----------CCeEEEcCCCccchHHHHHHhcccC---------CcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 96 A----------GDHIISGDDVYGGTYRYFAQVAPKI---------GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 96 ~----------gd~vl~~~~~y~~~~~~~~~~~~~~---------g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
+ +|+|++..++|++............ ...+..++.+|++++++++++++++|++++|+|||
T Consensus 116 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~npt 195 (392)
T 3ruy_A 116 WAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEA 195 (392)
T ss_dssp HHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTT
T ss_pred hhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCC
Confidence 2 6799999999976433222221110 12366777779999999999889999999999999
Q ss_pred ccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcccccccCCCC-ceEEEEEecChHH
Q psy12791 157 MTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSLTKYMNGHSD-VVMGATVTNDDSL 225 (393)
Q Consensus 157 G~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~ 225 (393)
|.++| +++|.++|+++ |+++|+||+|+.+... .+. ....|++ |+||.++| | +|+||++++ +++
T Consensus 196 G~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g--G~~~~G~~~~~-~~~ 269 (392)
T 3ruy_A 196 GINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG--GVFPISCAAAN-RDI 269 (392)
T ss_dssp TSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TTSCCEEEEEC-HHH
T ss_pred CCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC--ChhhhEEEEEC-HHH
Confidence 99998 99999999999 9999999999753221 111 1234665 67799843 6 899999997 777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhCC--CcceEeCCCCCCCcchHHHhhhcC
Q psy12791 226 QARLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESHP--CVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~--~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
.+.+...........++..+..+...++.+ ....++..++.+.+.+.|+++. .+..+ .
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------------------~ 331 (392)
T 3ruy_A 270 LGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV------------------R 331 (392)
T ss_dssp HTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE------------------E
T ss_pred HhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE------------------E
Confidence 776654333333455666666555554433 2345556667777777777542 11111 1
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~ 381 (393)
+.+.++.+.+++ ....+.+.+...++.+..|+ ++++|++++...++++++
T Consensus 332 ~~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~~~i~ 381 (392)
T 3ruy_A 332 GKGLFIGIELNE---PARPYCEQLKAAGLLCKETH---------------------------ENVIRIAPPLVISEEDLE 381 (392)
T ss_dssp EETTEEEEEESS---CSHHHHHHHHTTTEECCCBT---------------------------TTEEEECCCTTCCHHHHH
T ss_pred eeeeEEEEEEcc---hHHHHHHHHHHCCcEEecCC---------------------------CCEEEEECCCCCCHHHHH
Confidence 225788888853 33445555544455544321 579999999999999999
Q ss_pred HHHHHHHHhh
Q psy12791 382 DLDQALRKAC 391 (393)
Q Consensus 382 ~l~~al~~~~ 391 (393)
.+.++|+++.
T Consensus 382 ~~~~~l~~~l 391 (392)
T 3ruy_A 382 WAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=228.45 Aligned_cols=317 Identities=16% Similarity=0.159 Sum_probs=211.1
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEEe-ccHHHHH-HHHHHhcCCCCeEEEc
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLCY-SSGLGAV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~~-~~G~~al-~~~~~~~~~gd~vl~~ 103 (393)
.+.+|..+++.+.+++.+.... + +.....+...++++.++++++.+ +.+++ ++|++++ .++..++++||+|+++
T Consensus 27 ~~p~p~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~ 104 (393)
T 3kgw_A 27 LGPGPSNLAPRVLAAGSLRMIG-H-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTG 104 (393)
T ss_dssp CSSSCCCCCHHHHHHTTCCCCC-T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEE
T ss_pred ccCCCCCCCHHHHHHhcccccC-c-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 4667777777787777654221 1 11111356678999999999976 34655 5556677 7777889999999999
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
.++|.+. .+...++..|.+++.++.+ |++++++.+++ ++++|++++|+||||.++|+++|.++|+++ |+++
T Consensus 105 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~l 181 (393)
T 3kgw_A 105 TNGIWGM--RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRY-QCLL 181 (393)
T ss_dssp ESSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT-TCEE
T ss_pred eCCchhH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHc-CCEE
Confidence 8887532 2456677889999988864 78999999987 899999999999999999999999999999 9999
Q ss_pred EEeCccCcccccCC-CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--------------hc------
Q psy12791 178 VLDNTFLTAYYQKS-LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--------------SM------ 236 (393)
Q Consensus 178 ivDea~~~~~~~~~-~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--------------~~------ 236 (393)
|+||+|+.+..... ...+.|+++.|+||+++|++| +|+++++ +++++.+..... .+
T Consensus 182 i~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (393)
T 3kgw_A 182 LVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPG--ISLISFN-DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGET 258 (393)
T ss_dssp EEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSS--CEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSC
T ss_pred EEECCccccCcccchhhcCCCEEEecCcccccCCCc--eeEEEEC-HHHHHHHhccCCCCCceeecHHHHHHhhhhcccc
Confidence 99999985433222 234689999999998867777 8999997 788777653211 11
Q ss_pred ---CCCCCHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 237 ---GVVPSPFDCWLVTRGLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
....+......+...++ .+....++..++.+.+.+.|+++ ++. +..+. . ....+.+++
T Consensus 259 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~--------~~~~~~~~~ 324 (393)
T 3kgw_A 259 RVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLK-FFVKD----P--------EIRLPTITT 324 (393)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSSS----G--------GGBCSSEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe-eccCC----h--------hhcCCeEEE
Confidence 12233333332222222 24556677778888888888876 332 11111 0 011235667
Q ss_pred EEEcCCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQA 386 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~a 386 (393)
+.++. ......+.+.+... ++.+..|..+ ..++++|+++ +...++++++.+.++
T Consensus 325 ~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~-----------------------~~~~~iRi~~~~~~~~~~~i~~~~~~ 380 (393)
T 3kgw_A 325 VTVPA-GYNWRDIVSYVLDHFSIEISGGLGP-----------------------TEERVLRIGLLGYNATTENVDRVAEA 380 (393)
T ss_dssp EECCT-TBCHHHHHHHHHHHHCEECBCCCGG-----------------------GTTTEEEEECCGGGCCHHHHHHHHHH
T ss_pred EeCCC-CCCHHHHHHHHHHhCCEEEeCCccc-----------------------CCCCEEEEEecccCCCHHHHHHHHHH
Confidence 87742 12233444444332 5555544310 1257999998 665566666666666
Q ss_pred HHHh
Q psy12791 387 LRKA 390 (393)
Q Consensus 387 l~~~ 390 (393)
|+++
T Consensus 381 l~~~ 384 (393)
T 3kgw_A 381 LREA 384 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=225.03 Aligned_cols=303 Identities=16% Similarity=0.133 Sum_probs=198.1
Q ss_pred CchHHHHHHHHHHHhCCC-cEEEeccHH-HHH-HHHHHhc----CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 58 NPTRRNLERCIASLEEAK-HGLCYSSGL-GAV-TAVTHLL----SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~-~~i~~~~G~-~al-~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
.....++++++|+++|.+ +.+++++|+ +++ .++..+. ++||+|++++|+|++..... ..++..|++++.++.
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~ 121 (384)
T 1eg5_A 43 NLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPV 121 (384)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCB
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHH-HHHHhcCCEEEEEcc
Confidence 355689999999999986 566666655 457 6666665 79999999999998643322 234667999999987
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCC--cEEEEeCccCcccccCCC-CCcCcEEEEc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPD--ILLVLDNTFLTAYYQKSL-PWGVDIVLYS 202 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--~~livDea~~~~~~~~~~-~~~~di~~~S 202 (393)
+ |++++++.+.+++++|++++|+||||.++|+++|.++|+++ | +++|+||+|+.+.....+ ..++|+++.|
T Consensus 122 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s 200 (384)
T 1eg5_A 122 DSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKK-NKETLVHVDAVQTIGKIPFSLEKLEVDYASFS 200 (384)
T ss_dssp CTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH-CTTCEEEEECTTTTTTSCCCCTTTCCSEEEEE
T ss_pred CCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhc-CCceEEEEEhhhhcCCcccCchhcCCCEEEec
Confidence 4 78999999988899999999999999999999999999999 8 999999999843221122 2368999999
Q ss_pred ccccccCCCCceEEEEEecChHH--HHHHHHH---HHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHH
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSL--QARLKFL---QNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFL 273 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l 273 (393)
+||++ |++| +||++++ +++ ...+... ........+...+..+...++ .+...+++..++++.+.+.|
T Consensus 201 ~sK~~-g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 276 (384)
T 1eg5_A 201 AHKFH-GPKG--VGITYIR-KGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL 276 (384)
T ss_dssp GGGGT-SCTT--CEEEEEC-TTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCc--eEEEEEc-CCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 99998 7888 7999998 443 2211110 001122344444433333332 34456666777788888888
Q ss_pred hhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCC
Q psy12791 274 ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 274 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
++ +++. +..+. ....+.+++|.+++. ....+.+.|...++.+..|..++..... +
T Consensus 277 ~~-~g~~-~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~--------~ 331 (384)
T 1eg5_A 277 MN-LGAH-IITPL-------------EISLPNTLSVSFPNI--RGSTLQNLLSGYGIYVSTSSACTSKDER--------L 331 (384)
T ss_dssp HT-TTCE-ECSCT-------------TSBCTTEEEEECTTC--CHHHHHHHHHHTTEECBC-------------------
T ss_pred CC-CCeE-EeCCc-------------ccCCCCEEEEEeCCC--CHHHHHHHHhhCCeEEeccccccCCCCc--------c
Confidence 76 4442 22111 011346778877431 2334555555556666665543211000 0
Q ss_pred hhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 354 KETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 354 ~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.......|.+ ++++||+++...++++++.+.++|+++.
T Consensus 332 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 373 (384)
T 1eg5_A 332 RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (384)
T ss_dssp -CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 0111122322 4799999998888888888888877653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=233.16 Aligned_cols=323 Identities=14% Similarity=0.097 Sum_probs=203.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCC--CCCccccCCCCc--h---HHHHHHHHHHHhC------C-CcEEEeccHHHH-
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQP--PQGFEYSRSNNP--T---RRNLERCIASLEE------A-KHGLCYSSGLGA- 86 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~--~~~~~y~~~~~~--~---~~~lr~~la~~~~------~-~~~i~~~~G~~a- 86 (393)
..++ +.+.+++.+++.+.+.+.+.+ ..... ..|+++ + ..+||+++|++++ . +++|++|+|+++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~-~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTT-CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCccc-ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 4556 666777665554443332221 11111 113333 4 7899999999985 3 368999998876
Q ss_pred H-HHHHHh--------cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 87 V-TAVTHL--------LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 87 l-~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
+ .++.++ +++||+|+++.|+|.. +...++..|++++.+.. |++++++.+.+++++|++++||||||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~-d~~~l~~~~~~~~k~v~l~~p~NPtG 210 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPV----FREQTKYFDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEG 210 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH----HHHHHHHSCBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTC
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCccc----HHHHHHHcCCeeeeecC-CHHHHHHhhcCCceEEEEcCCCCCcc
Confidence 7 667778 8999999999999984 66677778887766543 67888888877899999999999999
Q ss_pred cccCHHHHHHHHHhCCCcEEEEeCccCcccc-cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc
Q psy12791 158 TVFDVKAISAVVKQHPDILLVLDNTFLTAYY-QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM 236 (393)
Q Consensus 158 ~~~~~~~l~~l~~~~~~~~livDea~~~~~~-~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~ 236 (393)
.+++ + +++ ++..++|+++..... ...+..+++++++||||.+ |++|+|+||++++++++++.++......
T Consensus 211 ~~~~-~----~l~---~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~l~~~l~~~~~~~ 281 (427)
T 2hox_A 211 LLRH-A----VIK---GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKN 281 (427)
T ss_dssp CCCC-C----SST---TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHH
T ss_pred cccH-H----HHc---CCCEEEeecccCCCCCccccCCCceEEEEeChhcC-CCCCceEEEEEECCHHHHHHHHHHHHhc
Confidence 9999 4 222 557889998764211 0112246889999999999 7999999999996589999988777655
Q ss_pred CCCCCHHHHHHHHhccC--------------C-HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 237 GVVPSPFDCWLVTRGLK--------------T-LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
....+...+..+...++ . +...++.+.++.+.+.+.|++.+++. ...+........+.....
T Consensus 282 ~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~---~~~~~~~~~~~~~~~~~p 358 (427)
T 2hox_A 282 TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS---YQELPQSEYCNYFRRMRP 358 (427)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEE---CCCCCSCEEETTTTEEEC
T ss_pred CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcc---ccccccccccccccccCC
Confidence 55555555443333222 2 33345666777888888888765542 110000000000000001
Q ss_pred CCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHH
Q psy12791 302 GTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLI 380 (393)
Q Consensus 302 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i 380 (393)
..+.++|+.++.+ .+..+.+++ ..++.+..|..+.. .++++|||++. +++.+
T Consensus 359 ~~g~f~~~~~~~~~~~~~~~ll~---~~gI~v~pg~~f~~----------------------~~~~~Ris~~~--~~e~l 411 (427)
T 2hox_A 359 PSPSYAWVKCEWEEDKDCYQTFQ---NGRINTQNGVGFEA----------------------SSRYVRLSLIK--TQDDF 411 (427)
T ss_dssp CCCSEEEEEECSGGGCSHHHHHH---HTTEECEEGGGGTS----------------------CTTEEEEECSS--CHHHH
T ss_pred CCceEEEEECCCcHHHHHHHHHH---HCCEEEcCCCccCC----------------------CCCEEEEEecC--CHHHH
Confidence 1246789999531 112223322 33555555544311 15899999985 44445
Q ss_pred HHHHHHHHHh
Q psy12791 381 ADLDQALRKA 390 (393)
Q Consensus 381 ~~l~~al~~~ 390 (393)
+...+.|.++
T Consensus 412 ~~~l~~l~~~ 421 (427)
T 2hox_A 412 DQLMYYLKDM 421 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=224.17 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=155.4
Q ss_pred CchHHHHHHHHHHHhCC-------Cc--EEEeccHHHH-H-HH--HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 58 NPTRRNLERCIASLEEA-------KH--GLCYSSGLGA-V-TA--VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~-------~~--~i~~~~G~~a-l-~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
..+..++|+++|++++. ++ .+++++|+++ + .+ +.+++++||+|+++.|+|.+ +...++..|.+
T Consensus 69 ~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~ 144 (397)
T 3fsl_A 69 MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWEN----HVAIFAGAGFE 144 (397)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHH----HHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchh----HHHHHHHcCCc
Confidence 35678999999998743 35 7888888775 6 44 34567999999999999985 66677888999
Q ss_pred EEeeCC----C---CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-
Q psy12791 125 VDFVDL----R---KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK- 190 (393)
Q Consensus 125 v~~~~~----~---d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~- 190 (393)
++.++. + |++++++.+. ++++++++++||||||.+++ +++|.++|+++ |+++|+||+|..+.+..
T Consensus 145 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~ 223 (397)
T 3fsl_A 145 VSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGME 223 (397)
T ss_dssp EEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTSSSCTT
T ss_pred eEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhhccCcc
Confidence 999988 2 7999999987 56889999999999999988 55888999999 99999999999865431
Q ss_pred ----C-----CCCcCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHHH-HH---HhcCCCCCHHHHHHHHhccCC-
Q psy12791 191 ----S-----LPWGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKF-LQ---NSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 191 ----~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~- 254 (393)
+ ...+.+++++|+||.+ |++|+|+||+++ .++++++.+.. .. .......+...+..+...+..
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (397)
T 3fsl_A 224 EDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDE 302 (397)
T ss_dssp GGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSH
T ss_pred cccHHHHHHHhcCCCEEEEecccccc-cCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCH
Confidence 1 1135679999999999 799999999975 34566654422 21 112223333333333332322
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 255 ---------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 255 ---------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+...++++.++++.+.+.|+++
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 303 ALKASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556667777888888764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=224.61 Aligned_cols=306 Identities=14% Similarity=0.106 Sum_probs=216.7
Q ss_pred CchHHHHHHHH-HHHhC-CCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 58 NPTRRNLERCI-ASLEE-AKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 58 ~~~~~~lr~~l-a~~~~-~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
.|...+||+++ |+++| .++.++++||++++ .++.++ +++||+|+++.++|.+ +...++..|++++.++.+
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~----~~~~~~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPA----TPLAAIWCGLEPYFIDISID 110 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTH----HHHHHHHTTCEEEEECBCTT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH----HHHHHHHcCCEEEEEecCCc
Confidence 47889999999 99999 67899999999998 777776 8999999999999996 445567789999999864
Q ss_pred ----CHHHHHhhc-CCC--CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC--CC-CCcCcEEEE
Q psy12791 132 ----KIENLIKYI-KPN--TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK--SL-PWGVDIVLY 201 (393)
Q Consensus 132 ----d~~~l~~~l-~~~--~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~--~~-~~~~di~~~ 201 (393)
|++++++++ +++ |++|+ |+||+|.+.|+++|.++|+ + |+++|+|++|+.+.... +. ....|+.+.
T Consensus 111 ~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~-~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~ 185 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-K-GVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY 185 (377)
T ss_dssp TCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-T-TCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred cCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-c-CCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence 789999988 556 88887 7789999999999999999 9 99999999998754322 22 122577777
Q ss_pred cc--cccccCCCCceEEEEEecChHHHHHHHHHHHh------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 202 SL--TKYMNGHSDVVMGATVTNDDSLQARLKFLQNS------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 202 S~--sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
|| +|+++ . | ++|+++++++++.++++..+.. +....+.+.+++....++.+..+.++..++++
T Consensus 186 S~~~~K~l~-~-g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~ 262 (377)
T 3ju7_A 186 SFHATKPFG-I-G-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE 262 (377)
T ss_dssp ECBTTSSSC-C-B-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCCCCcCC-C-C-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 69994 4 4 5899999888998888766542 23446778888888888888888999999999
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
.+.+.|+.++.+.....+.-.. ..+..++.+.++ +....+.+.+.|...++.++.+....+...+...
T Consensus 263 ~~~~~L~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~ 330 (377)
T 3ju7_A 263 WYKQLLQSNGLMKKGWQLQKTE-----------AVIQQFMPILCP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFR 330 (377)
T ss_dssp HHHHHHHHTTTTTTTCBCCCCS-----------CBCCSSEEEECC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGT
T ss_pred HHHHHhcCCCCccccccCCCCC-----------cceEEEEEEEeC-ChhhHHHHHHHHHHCCCceecccCCccccchhhh
Confidence 9999998876542111111000 001123455553 2122556666666556665554321111111111
Q ss_pred --cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 348 --THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 348 --~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....++..+.. ..+.|||+++...++++++.+.++++++.
T Consensus 331 ~~~~~~~p~~~~~----~~~~l~lp~~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 331 NYKSTDLTRTNKI----AKRIVSLPLWEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp TSCBSCCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHH----HhCEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 11122222222 25799999999999999999999987654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=227.68 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHhCC-------Cc--EEEeccHHHH-H-HH--HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 58 NPTRRNLERCIASLEEA-------KH--GLCYSSGLGA-V-TA--VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~-------~~--~i~~~~G~~a-l-~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
..+..++|+++++++.. ++ ++++|+|+++ + .+ +.+++++||+|++++|+|.+ +...++..|.+
T Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~ 166 (420)
T 4f4e_A 91 IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWEN----HRALFDMAGFE 166 (420)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH----HHHHHHHTTCC
T ss_pred CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHh----HHHHHHHcCCe
Confidence 45778999999998743 34 7888888775 6 55 35668999999999999985 66777888999
Q ss_pred EEeeCC----C---CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC-
Q psy12791 125 VDFVDL----R---KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK- 190 (393)
Q Consensus 125 v~~~~~----~---d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~- 190 (393)
++.++. + |++++++.+. ++++++++++||||||.+++ +++|.++|+++ |+++|+||+|..+.+..
T Consensus 167 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~ 245 (420)
T 4f4e_A 167 VVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGESIE 245 (420)
T ss_dssp EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCTT
T ss_pred EEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEccccccccCCcc
Confidence 999987 2 7899999887 56899999999999999998 56888889999 99999999998765431
Q ss_pred ----C-----CCCcCcEEEEcccccccCCCCceEEEEEe--cChHHHHHH----HHHHHhcCCCCCHHHHHHHHhccCC-
Q psy12791 191 ----S-----LPWGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARL----KFLQNSMGVVPSPFDCWLVTRGLKT- 254 (393)
Q Consensus 191 ----~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (393)
+ ...+.+++++|+||.+ |++|+|+||+++ +++++++.+ +..........+...+..+...+..
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (420)
T 4f4e_A 246 ADAAAVRLFAAANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASP 324 (420)
T ss_dssp GGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCH
T ss_pred hhhHHHHHHHhcCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCH
Confidence 0 0135679999999999 699999999864 446655543 2222222223334443333322222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 255 ---------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 255 ---------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+...++++.++++.+.+.|+++
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 325 ELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566667777888888765
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=230.71 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=132.8
Q ss_pred CchHHHHHHHHHHHh----CC------CcEEEeccHHHH-H-HHHHH-----hcCCCCeEEEcCCCccchHHHHHHhccc
Q psy12791 58 NPTRRNLERCIASLE----EA------KHGLCYSSGLGA-V-TAVTH-----LLSAGDHIISGDDVYGGTYRYFAQVAPK 120 (393)
Q Consensus 58 ~~~~~~lr~~la~~~----~~------~~~i~~~~G~~a-l-~~~~~-----~~~~gd~vl~~~~~y~~~~~~~~~~~~~ 120 (393)
..+..++|+++|+++ +. ++.|++|+|+++ + .++.. ++++||+|++++|+|.+ +...++.
T Consensus 137 ~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~----~~~~~~~ 212 (533)
T 3f6t_A 137 DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTP----YLRIPEL 212 (533)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHH----HHTSGGG
T ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHH----HHHHHHH
Confidence 456788999999986 32 258888888776 6 55555 68999999999999984 6777788
Q ss_pred CCcEEEeeCCC---------CHHHHHhhcCCCCcEEEEecCCCCcccccCHH---HHHHHHH-hCCCcEEEEeCccCccc
Q psy12791 121 IGLEVDFVDLR---------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVK---AISAVVK-QHPDILLVLDNTFLTAY 187 (393)
Q Consensus 121 ~g~~v~~~~~~---------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~---~l~~l~~-~~~~~~livDea~~~~~ 187 (393)
.|.+++.++.+ |++++++.+.+++++|++++|+||||.+++.+ +|.++|+ ++ ++++|+||+|..+.
T Consensus 213 ~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~-~~~li~De~y~~~~ 291 (533)
T 3f6t_A 213 KDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNP-KLMIISDEVYGAFV 291 (533)
T ss_dssp GGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCT-TCEEEEECTTGGGS
T ss_pred cCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCC-CCEEEEcCCccccc
Confidence 89998888763 78999999998999999999999999999966 7778888 68 99999999999765
Q ss_pred ccCC----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 188 YQKS----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 188 ~~~~----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
.... ...+++++++||||.+ |++|+|+||++++++++.+
T Consensus 292 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~~~ 334 (533)
T 3f6t_A 292 PNFKSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEKNVFD 334 (533)
T ss_dssp TTCCCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESSCHHH
T ss_pred cCccCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcHHHHH
Confidence 4211 1124679999999999 7999999999998553433
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=225.29 Aligned_cols=278 Identities=15% Similarity=0.064 Sum_probs=194.5
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHhcCC-------------CCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHLLSA-------------GDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~~~~-------------gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
....++++.+++++|.+ +.+++++| ++++ .++..+..+ ||+|+++.|+|++ +...++..|
T Consensus 69 ~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~----~~~~~~~~g 144 (397)
T 3f9t_A 69 LLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFS----FEKGREMMD 144 (397)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTH----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhH----HHHHHHHcC
Confidence 34567889999999987 45555555 5567 666666554 9999999999996 556667789
Q ss_pred cEEEeeCCC-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-------
Q psy12791 123 LEVDFVDLR-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ------- 189 (393)
Q Consensus 123 ~~v~~~~~~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~------- 189 (393)
++++.++.+ |++++++.+.+ ++++|++++|+||||.+.|+++|.++|+++ |+++|+||+|+.+...
T Consensus 145 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 145 LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH-TCEEEEECTTGGGTGGGCCGGGC
T ss_pred ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh-CCeEEEEccccchhhhhcccccc
Confidence 999999886 89999999988 899999999999999999999999999999 9999999999864321
Q ss_pred -----CCCCC--cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC---------CCC--CHHHHHHHHhc
Q psy12791 190 -----KSLPW--GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG---------VVP--SPFDCWLVTRG 251 (393)
Q Consensus 190 -----~~~~~--~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~ 251 (393)
.+... +.|+++.|+||+++ +|.|+|+++++++.+.+.++.....+. ... +...++.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~s~~K~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 301 (397)
T 3f9t_A 224 KKGVNYKFDFSLGVDSITIDPHKMGH--CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY 301 (397)
T ss_dssp CTTCCCCCSGGGTCSEEECCTTTTTC--CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred cccccccccccccCCeEEEccccccC--CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence 02222 67999999999883 345799999886666654432111111 111 22223333322
Q ss_pred c--CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccc
Q psy12791 252 L--KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329 (393)
Q Consensus 252 ~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (393)
+ ..+....++..++.+.+.+.|+++ ++..+ .+ ..++++++.++ + ...+.+.+...+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~-~---~~~~~~~l~~~g 359 (397)
T 3f9t_A 302 LGREGQRKIVNECMENTLYLYKKLKEN-NFKPV-IE----------------PILNIVAIEDE-D---YKEVCKKLRDRG 359 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SC----------------CSSSEEEEECT-T---HHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-cC----------------CCccEEEEEeC-C---HHHHHHHHHhCC
Confidence 2 234456666777888888888876 33211 11 12577888874 3 233444443334
Q ss_pred cccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 330 ~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.+..|. .++++|++++..+++++++.+.++|+++.
T Consensus 360 i~v~~~~--------------------------~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 360 IYVSVCN--------------------------CVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp CBCEECS--------------------------SSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred eEEeccC--------------------------CCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 4443321 14899999999999999999999998764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=216.31 Aligned_cols=306 Identities=16% Similarity=0.113 Sum_probs=212.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.+...++|+++|++++.++.+++++|++++ .++..+ +++||+|+++.|+|++ +...++..|++++.++.+
T Consensus 54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~ 129 (391)
T 3dr4_A 54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIA----SANSVTYCGATPVLVDNDPRT 129 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHH----HHHHHHHCCCEEEEEecCccc
Confidence 3688999999999999999999999999898 777777 8999999999999996 455667789999999875
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CCCcCcEEEEccc--
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LPWGVDIVLYSLT-- 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~~~~di~~~S~s-- 204 (393)
|++++++.+++++++|+ ++||||.+.|+++|.++|+++ |+++|+|++|+.+..... ...-.|+++.||+
T Consensus 130 ~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~ 205 (391)
T 3dr4_A 130 FNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRH-NLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGN 205 (391)
T ss_dssp CSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECBTT
T ss_pred cCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHc-CCEEEEECcccccceECCeeecccCCEEEEECCCC
Confidence 78999999988888888 678999999999999999999 999999999987543222 2222478888876
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhcC--------------CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG--------------VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (393)
|+++ . | ++|+++++++++.+.++....... .......+.+....++.+....++..++.+.+.
T Consensus 206 K~l~-~-g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~ 282 (391)
T 3dr4_A 206 AIIT-T-G-EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYE 282 (391)
T ss_dssp SSSC-C-B-SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CcCC-c-C-CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8884 2 3 599999887778887765543211 234555555555555666666777777888888
Q ss_pred HHHhhCCCcceEeC--CCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCccccccccCCccccccCcccc
Q psy12791 271 KFLESHPCVKGVLH--PGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIFRCAESLGGIESLADLPAEM 347 (393)
Q Consensus 271 ~~l~~~~~~~~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~ 347 (393)
+.|++. ++..... +.. ......++++.++.. ....+.+.+.|...++.++.|... +.+.+...
T Consensus 283 ~~L~~~-g~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p-~~~~~~~~ 348 (391)
T 3dr4_A 283 QKLARL-GNRVTKPHVALT------------GRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHP-MHIMPPYA 348 (391)
T ss_dssp HHHGGG-TTSEECCCCCTT------------SCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCC-GGGSGGGG
T ss_pred HHhhcC-CccccCcCCCCC------------CcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCc-cccChhhh
Confidence 888876 4432211 110 011124567777420 122344555554446665554321 12222111
Q ss_pred c--CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 348 T--HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 348 ~--~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
. ...++..... ..+.|||+++...++++++.+.++|+++.
T Consensus 349 ~~~~~~~~~~~~~----~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 349 HLATDDLKIAEAC----GVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp GGCCTTCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hcCcCCChHHHHH----HhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1 1112221111 24789999999999999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=221.25 Aligned_cols=314 Identities=14% Similarity=0.117 Sum_probs=204.7
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC---cEEEeccH-HHHH-HHHHHhcCCCCeEEE
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK---HGLCYSSG-LGAV-TAVTHLLSAGDHIIS 102 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~---~~i~~~~G-~~al-~~~~~~~~~gd~vl~ 102 (393)
.+..|..+++.+.+++.+.... +.+.. ..+..+++++.+++++|.+ +.+++++| ++++ .++..++++||+|++
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~~-~~~~~-~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~ 100 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVPY-FRTTE-FSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLV 100 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCCC-CSSHH-HHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEE
T ss_pred ecCCCCCCcHHHHHHhcCCCCC-CCCHH-HHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEE
Confidence 4566777777777766554221 11111 1245678999999999986 34554555 6668 777788899999999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
++|.|.+.. +...+...|++++.++.+ |++++++.+++++++|++++|+||||.++|+++|.++|+++ |+++
T Consensus 101 ~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~l 177 (376)
T 3f0h_A 101 IDGGSFGHR--FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKN-NMFF 177 (376)
T ss_dssp EESSHHHHH--HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHT-TCEE
T ss_pred EeCChhhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHc-CCEE
Confidence 998776532 334567789888888764 78999998888999999999999999999999999999999 9999
Q ss_pred EEeCccCcccccCCCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-----------------hcCCC
Q psy12791 178 VLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-----------------SMGVV 239 (393)
Q Consensus 178 ivDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-----------------~~~~~ 239 (393)
|+|++++.+....... .++|+++.|+||+++|++| +|+++++ +++.+.+..... .....
T Consensus 178 i~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (376)
T 3f0h_A 178 VCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG--ISVIVLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFT 254 (376)
T ss_dssp EEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS--CEEEEEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSC
T ss_pred EEEcCccccCccccccccCccEEEecCcccccCCCc--eEEEEEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCC
Confidence 9999998654322221 3689999999999966888 6888887 787777653100 00112
Q ss_pred CCHHHHHHHHhccC------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 240 PSPFDCWLVTRGLK------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 240 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
.+......+...++ .+....++..++++.+.+.|++++ +. + .+. .....++.+...+
T Consensus 255 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-~-~~~--------------~~~~~~~~~~~~~ 317 (376)
T 3f0h_A 255 PAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FE-L-VSE--------------SPANGVTSVHPTT 317 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EE-E-CCS--------------SBBTTEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-Cc-c-Ccc--------------ccCceEEEEeCCC
Confidence 22211111222221 134455555566666666666542 11 1 111 0112344444422
Q ss_pred CHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 314 GAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 314 ~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.....+.+.+... ++.+..|.. + ..++++|+|++...++++++.+.++|+++.
T Consensus 318 --~~~~~l~~~l~~~~gi~v~~g~~------~-----------------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 318 --ANAYDIFLKLKDEYGIWICPNGG------E-----------------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp --SCHHHHHHHHHHHSSEECEECCG------G-----------------GTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHhCCEEEecCcc------c-----------------cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 1223344444333 455444310 0 125799999999999999999999888764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=228.71 Aligned_cols=313 Identities=14% Similarity=0.126 Sum_probs=203.3
Q ss_pred CCCC-CCCC--CCCc-cCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCcEEEecc-HHHHH-HHHHH---
Q psy12791 23 QWRS-QCVI--PPII-LSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSS-GLGAV-TAVTH--- 92 (393)
Q Consensus 23 ~~~~-~~~~--~p~~-~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~-G~~al-~~~~~--- 92 (393)
.++| +++. ++++ +++.+.+++.+.+.. .+....|+++...++++++|+++|.++.+++++ |++++ .++..
T Consensus 29 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~ 108 (375)
T 2eh6_A 29 EYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARK 108 (375)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHH
Confidence 4567 4444 5776 666666554332110 011123456788999999999999854455555 45566 44432
Q ss_pred hc---CCC-CeEEEcCCCccchHHHHHHhccc----CCcE-----EEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 93 LL---SAG-DHIISGDDVYGGTYRYFAQVAPK----IGLE-----VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 93 ~~---~~g-d~vl~~~~~y~~~~~~~~~~~~~----~g~~-----v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+. ++| |+|++++|+|++........... .|.. +..++..|++++++.+++++++|++++|+||||.+
T Consensus 109 ~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~ 188 (375)
T 2eh6_A 109 YWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVN 188 (375)
T ss_dssp HHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSE
T ss_pred HhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCc
Confidence 34 778 99999999998753322222111 1222 66777779999999998889999999999999999
Q ss_pred cC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC---CCc--CcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 160 FD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL---PWG--VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 160 ~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~---~~~--~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
++ +++|.++|+++ |+++|+||+|+++.. ..+. ..+ .|++ |+||++ | +|+|+||++++ +++++.+
T Consensus 189 ~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~-~-~g~~~G~~~~~-~~~~~~~ 262 (375)
T 2eh6_A 189 EASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGL-G-GGVPIGAILAR-EEVAQSF 262 (375)
T ss_dssp ECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGG-G-TTSCCEEEEEE-HHHHTTC
T ss_pred CCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccc-c-CCCCeEEEEEc-HHHHhhh
Confidence 88 99999999999 999999999995321 1111 123 6766 677999 4 58999999998 6777665
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
+..........++..+..+...++......++..++.+.+.+.|++++. ..+ .+.+.++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~------------------~~~g~~~~~ 323 (375)
T 2eh6_A 263 TPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGK-GKV------------------KGRGLMLGL 323 (375)
T ss_dssp CTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SEE------------------EEETTEEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc------------------eEEEEEEEE
Confidence 4311111223356665555554544434556666777778888876543 111 112578888
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
.++++ ...+.+.+...++.+..+ .++++|++++...++++++.+.++|++
T Consensus 324 ~~~~~---~~~~~~~l~~~gi~~~~~---------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 324 ELERE---CKDYVLKALEKGLLINCT---------------------------AGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp ECSSC---CHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEcCc---HHHHHHHHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88532 223333333233333221 157899999988899989998888876
Q ss_pred h
Q psy12791 390 A 390 (393)
Q Consensus 390 ~ 390 (393)
+
T Consensus 374 ~ 374 (375)
T 2eh6_A 374 I 374 (375)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=210.63 Aligned_cols=317 Identities=15% Similarity=0.097 Sum_probs=208.2
Q ss_pred cCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHhCCCcE-EEeccHHHHH-HHHHHh
Q psy12791 17 IGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLEEAKHG-LCYSSGLGAV-TAVTHL 93 (393)
Q Consensus 17 ~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~~~~~~-i~~~~G~~al-~~~~~~ 93 (393)
||...++.+|-++.++..+++.+.+++.+.... +. ..| .++...++++.+++++|.+.+ +++++|++++ .++..+
T Consensus 2 ~~~~~~~~id~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~ 79 (356)
T 1v72_A 2 GETSRPPALGFSSDNIAGASPEVAQALVKHSSG-QA-GPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM 79 (356)
T ss_dssp ----CCCCCBCSCGGGCCCCHHHHHHHHHTTSS-CC-CSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred CCCCCCceEeeccCCccCCCHHHHHHHHhhccC-cc-cccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh
Confidence 455556778822346666777776665444221 11 223 357788999999999995454 5556677777 777777
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccC--CcEEEeeCCC----CHHHHHh-hcCC-------CCcEEEEecCCCCcccc
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKI--GLEVDFVDLR----KIENLIK-YIKP-------NTKMVWIENPTNPLMTV 159 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~--g~~v~~~~~~----d~~~l~~-~l~~-------~~~~v~l~~p~nptG~~ 159 (393)
.++||+|+++.|+|.+++.. ..+... |.+++.++.+ |++++++ .+.+ ++++|++++|+| ||.+
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~ 156 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSI 156 (356)
T ss_dssp CCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCC
T ss_pred cCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCcc
Confidence 88999999999998753211 013444 8999999875 7999999 8875 589999999987 9997
Q ss_pred cC---HHHHHHHHHhCCCcEEEEeCccCcccc---c-CCCC----CcCcEEEEcccccccCCCCceEEEEEecChHHHHH
Q psy12791 160 FD---VKAISAVVKQHPDILLVLDNTFLTAYY---Q-KSLP----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQAR 228 (393)
Q Consensus 160 ~~---~~~l~~l~~~~~~~~livDea~~~~~~---~-~~~~----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~ 228 (393)
++ +++|.++|+++ |+++|+|++|..+.. . .+.. .+.|+++.|+||+ +++.| .||++++ +++.+.
T Consensus 157 ~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G--~g~~~~~-~~~~~~ 231 (356)
T 1v72_A 157 YTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA--EAIVLFN-TSLATE 231 (356)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC--EEEEESS-GGGHHH
T ss_pred CCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc--cEEEEEC-HHHHhh
Confidence 76 78899999999 999999999975321 1 1211 2578889999999 34433 5688886 788887
Q ss_pred HHHHHHhcCCCCC--HHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 229 LKFLQNSMGVVPS--PFDCWLVTRGLKT--LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 229 ~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
++......+.... ........+.++. +....++..++.+.+.+.|++++++.. ..|. .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~----------------~~ 294 (356)
T 1v72_A 232 MSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEV-LGGT----------------EA 294 (356)
T ss_dssp HHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-ESCC----------------CS
T ss_pred HHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEE-ccCC----------------Cc
Confidence 7655443333222 2222222333332 333456667777888888887666542 2232 24
Q ss_pred ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
.++++.++ . .+.+.+...++.+..|. + + ++++|++++...++++++.+.
T Consensus 295 ~~~~~~~~--~----~~~~~l~~~gi~v~~g~-~----------------------~--~~~iRi~~~~~~~~~~i~~~~ 343 (356)
T 1v72_A 295 NILFCRLD--S----AMIDALLKAGFGFYHDR-W----------------------G--PNVVRFVTSFATTAEDVDHLL 343 (356)
T ss_dssp SEEEEEEC--H----HHHHHHHHTTCBCBCSS-S----------------------S--TTEEEEECCTTCCHHHHHHHH
T ss_pred cEEEEEcC--H----HHHHHHHhcCeEEeccc-c----------------------C--CCeEEEEecCCCCHHHHHHHH
Confidence 67888883 2 34444433344444332 0 1 478999999999999999998
Q ss_pred HHHHHhh
Q psy12791 385 QALRKAC 391 (393)
Q Consensus 385 ~al~~~~ 391 (393)
++|+++.
T Consensus 344 ~~l~~~l 350 (356)
T 1v72_A 344 NQVRLAA 350 (356)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 8887653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=219.49 Aligned_cols=349 Identities=16% Similarity=0.139 Sum_probs=216.9
Q ss_pred ccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCC--chHHHHHHHHHHHhCCCcEEEeccHHHH
Q psy12791 10 FATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNN--PTRRNLERCIASLEEAKHGLCYSSGLGA 86 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~~lr~~la~~~~~~~~i~~~~G~~a 86 (393)
..+.+++||.+.... + +.+.+++.+++.+.+++.+.+ ...+|+. +...++|+++|++++.++.+++++|+++
T Consensus 5 ~~~~~~~gg~~~~~~-~l~~~~p~~~~p~~~~~a~~~~~----~~~~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~a 79 (424)
T 2po3_A 5 LSDLAFFGGPAAFDQ-PLLVGRPNRIDRARLYERLDRAL----DSQWLSNGGPLVREFEERVAGLAGVRHAVATCNATAG 79 (424)
T ss_dssp TTTCGGGTCCCSCSS-CEETTCCCCCCHHHHHHHHHHHH----HHTCCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHH
T ss_pred hhhhhhhcCCccccc-cccccCCCCCChHHHHHHHHHHH----hcCCcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHH
Confidence 346778999774321 3 577888877666665543321 1223543 7889999999999998766666666667
Q ss_pred H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 87 V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 87 l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+ .++..+ .+||+|++++|+|++ +...++..|++++.++.+ |++++++.+++++++|++++ |||..
T Consensus 80 l~~~l~~l-~~gd~Vlv~~~~~~~----~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~ 151 (424)
T 2po3_A 80 LQLLAHAA-GLTGEVIMPSMTFAA----TPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRP 151 (424)
T ss_dssp HHHHHHHH-TCCSEEEEESSSCTH----HHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCC
T ss_pred HHHHHHHc-CCCCEEEECCCccHH----HHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCc
Confidence 7 555554 478999999999996 445667789999999874 78999999988899999864 89999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCccc-cc-CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAY-YQ-KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~-~~-~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 237 (393)
.++++|.++|+++ |+++|+|++|+.+. +. .++....|+++.||||.. +++|.|+||++++++++++.++.......
T Consensus 152 ~~l~~i~~la~~~-~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K-~l~~~~~G~~v~~~~~l~~~l~~~~~~~~ 229 (424)
T 2po3_A 152 CAADQLRKVADEH-GLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATK-AVNAFEGGAVVTDDADLAARIRALHNFGF 229 (424)
T ss_dssp CCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS-SSCCSSCEEEEESCHHHHHHHHHHHBTTT
T ss_pred CCHHHHHHHHHHc-CCEEEEECccccCCeECCeecccccCEEEEeCCCCC-CccCCCCeEEEeCCHHHHHHHHHHHhcCc
Confidence 9999999999999 99999999999533 21 122222579999999444 24446899999976788888776543211
Q ss_pred ------------CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCC--
Q psy12791 238 ------------VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGT-- 303 (393)
Q Consensus 238 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~-- 303 (393)
...++..+..+...++.+....++..++.+.+.+.|++++++.....+. .+.
T Consensus 230 ~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------------~~~~~ 295 (424)
T 2po3_A 230 DLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDR--------------HGLNN 295 (424)
T ss_dssp TCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGG--------------GSCCC
T ss_pred cccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCC--------------CCccc
Confidence 1224455555444444444445555556666667776555543111011 001
Q ss_pred cceEEEEEcCC--HHHHHHHHHhcCccccccccCCccccccCccccc--CCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 304 SGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIESLADLPAEMT--HKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 304 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~--~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
..++++.+++. ....+.+.+.+...++.+...........+.... ....+..... ....||++++...++++
T Consensus 296 ~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~----~~~~l~l~~~~~~t~e~ 371 (424)
T 2po3_A 296 HQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERL----AARVLSLPTGTAIGDDD 371 (424)
T ss_dssp CCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHH----HTTEEEECCSTTCCHHH
T ss_pred cEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHH----hcCEEEeeCCCCCCHHH
Confidence 14566777410 0123334444443344443310000000000000 0000111110 13457888778999999
Q ss_pred HHHHHHHHHHhh
Q psy12791 380 IADLDQALRKAC 391 (393)
Q Consensus 380 i~~l~~al~~~~ 391 (393)
++.+.++|+++.
T Consensus 372 i~~~~~~L~~~~ 383 (424)
T 2po3_A 372 IRRVADLLRLCA 383 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=217.46 Aligned_cols=227 Identities=11% Similarity=0.093 Sum_probs=163.7
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHHHhcCCCC
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVTHLLSAGD 98 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~~~~~~gd 98 (393)
++| +...+|...++.+.+++. .|.. +.....++++.+++++|. ++.+++++|++++ .++..+ +||
T Consensus 30 v~~~~~~~~~~~~~~~v~~a~~-------~~~~-~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd 99 (374)
T 2aeu_A 30 LYDLSGLSGGFLIDEKDKALLN-------TYIG-SSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPK 99 (374)
T ss_dssp CEECSSCCCCCCCCHHHHHHHT-------STTH-HHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCS
T ss_pred eeeecccCCCCCCCHHHHHHHH-------HhcC-chHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCC
Confidence 445 333445555555555543 1111 122345677777888898 4567777777777 666655 999
Q ss_pred eEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcE-EEEecCCCCcc-cccCHHHHHHHHHhCCCcE
Q psy12791 99 HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKM-VWIENPTNPLM-TVFDVKAISAVVKQHPDIL 176 (393)
Q Consensus 99 ~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~-v~l~~p~nptG-~~~~~~~l~~l~~~~~~~~ 176 (393)
+|+++.|+|++++..+. .++..|++++.+ .|++++++. .+++++ |++++|||||| ...++++|.++|+++ |++
T Consensus 100 ~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~-~~~ 174 (374)
T 2aeu_A 100 KVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK-EAI 174 (374)
T ss_dssp EEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH-TCC
T ss_pred EEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc-CCE
Confidence 99999999988665554 567889999988 589999988 778999 99999999999 888899999999999 999
Q ss_pred EEEeCccCcccc--c-C--CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 177 LVLDNTFLTAYY--Q-K--SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 177 livDea~~~~~~--~-~--~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
+|+||+|+.+.. . . +...+.|++++|+||+++| +|+||++++ +++++.++.....++...++..+..+...
T Consensus 175 li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g---~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~a 250 (374)
T 2aeu_A 175 VFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG---PRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRA 250 (374)
T ss_dssp EEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS---CSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHH
T ss_pred EEEECCcccccccccccCCccccCCcEEEecCcccccC---cceEEEEEC-HHHHHHHHHhhccccCCCCHHHHHHHHHH
Confidence 999999987641 1 1 2334679999999999743 579999997 88999888777666666677766655554
Q ss_pred cCCHH-HHHHHHHHHHHHH
Q psy12791 252 LKTLP-CRLKEHERGSIEV 269 (393)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~l 269 (393)
++.+. .+++++.++.+.+
T Consensus 251 l~~~~~~~~~~~~~~~~~~ 269 (374)
T 2aeu_A 251 LKNFNLERIRKAFERAKNF 269 (374)
T ss_dssp HHHCCHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 43222 2445555555444
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=216.07 Aligned_cols=314 Identities=17% Similarity=0.205 Sum_probs=205.0
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCC--chHHHHHHHHHHHhCCC-----cEEEeccH-HHHH-HHHHHhc---CC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNN--PTRRNLERCIASLEEAK-----HGLCYSSG-LGAV-TAVTHLL---SA 96 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~~lr~~la~~~~~~-----~~i~~~~G-~~al-~~~~~~~---~~ 96 (393)
..+|...++.+.+++.+.... + + ++. ....++++.++++++.. +.+++++| ++++ .++..+. ++
T Consensus 10 ~p~p~~~~~~v~~a~~~~~~~-~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~ 85 (385)
T 2bkw_A 10 IPGPIILSGAVQKALDVPSLG-H-T--SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAP 85 (385)
T ss_dssp SSSSCCCCHHHHHTTSCCCCC-T-T--SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCS
T ss_pred cCCCcCchHHHHHHHhccccc-c-C--CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCC
Confidence 344666666777776554221 1 1 221 24677899999998763 56666655 5567 6667776 89
Q ss_pred CCeEEEcC-CCccchHHHHHHhcccCCcEEEeeCC-C-----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHH
Q psy12791 97 GDHIISGD-DVYGGTYRYFAQVAPKIGLEVDFVDL-R-----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAV 168 (393)
Q Consensus 97 gd~vl~~~-~~y~~~~~~~~~~~~~~g~~v~~~~~-~-----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l 168 (393)
||+|++++ +.|+.. +...++..|++++.++. + |++++++.+++ ++++|++++|+||||.++|+++|.++
T Consensus 86 gd~vlv~~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~ 162 (385)
T 2bkw_A 86 NKNVLVVSTGTFSDR---FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA 162 (385)
T ss_dssp CCEEEEECSSHHHHH---HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred CCeEEEEcCCcchHH---HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHH
Confidence 99998874 455532 23456778999999988 4 78999998876 79999999999999999999999999
Q ss_pred HHhC-CCcEEEEeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHH-HHH---------------
Q psy12791 169 VKQH-PDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA-RLK--------------- 230 (393)
Q Consensus 169 ~~~~-~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~-~~~--------------- 230 (393)
|+++ +|+++|+|++|+.+....++ ..++|+++.|+||+++|++| +||++++ +++++ .++
T Consensus 163 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 239 (385)
T 2bkw_A 163 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLR 239 (385)
T ss_dssp HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHH
T ss_pred HHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCc--ceEEEEc-HHHHHHHHhhccCCCCCceeecHH
Confidence 9997 48999999999865432222 24689999999998867888 5999997 66655 431
Q ss_pred ---HH--HHhcC-----CCCCHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHH-hhCCCcceEeCCCCCCCcchH
Q psy12791 231 ---FL--QNSMG-----VVPSPFDCWLVTRGLKT-----LPCRLKEHERGSIEVAKFL-ESHPCVKGVLHPGLPSHPNHE 294 (393)
Q Consensus 231 ---~~--~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l-~~~~~~~~v~~~~l~~~~~~~ 294 (393)
.. ....+ ...+......+...++. +...+++..++++.+.+.| +++ ++. +..+. +..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~-~~~~~-~~~---- 312 (385)
T 2bkw_A 240 RWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT-SVSRY-PSN---- 312 (385)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE-ESSCS-SST----
T ss_pred HHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce-ecccC-ccc----
Confidence 11 11111 23444443332222222 3445666677788888888 765 332 21111 000
Q ss_pred HHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEE-ecC
Q psy12791 295 LAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLS-VGV 373 (393)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls-~~~ 373 (393)
...+.+++|.++ + ...+.+.|...++.+..|..+. ..++++|+| ++.
T Consensus 313 ------~~~~~~~~~~~~-~---~~~~~~~l~~~gi~v~~g~~~~----------------------~~~~~iRis~~~~ 360 (385)
T 2bkw_A 313 ------MSAHGLTAVYVA-D---PPDVIAFLKSHGVVIAGGIHKD----------------------IGPKYIRIGHMGV 360 (385)
T ss_dssp ------TBCSSCEEEECS-C---HHHHHHHHHHTTEECBCCCCTT----------------------TGGGEEEECCCGG
T ss_pred ------ccCCceEEEecC-C---HHHHHHHHHHCCeEEeCCCCcc----------------------cCCCEEEEEcccc
Confidence 012578888884 3 3445555544466655543210 125789999 773
Q ss_pred ---CChHHHHHHHHHHHHHhh
Q psy12791 374 ---EGYTDLIADLDQALRKAC 391 (393)
Q Consensus 374 ---~~~~~~i~~l~~al~~~~ 391 (393)
..++++++.+.++|+++.
T Consensus 361 ~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 361 TACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp GTSSTTCTHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHH
Confidence 467778888888887664
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=214.64 Aligned_cols=287 Identities=13% Similarity=0.043 Sum_probs=193.6
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC--eEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD--HIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd--~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
++...+|++++|+++|.+..+++++|++++ .++..++.+|| .|+++.+.|...+. ........|++++.++.+
T Consensus 46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~ 124 (357)
T 3lws_A 46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHE-QDGLKELHPIETILVGAADRL 124 (357)
T ss_dssp ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSS-TTHHHHHSSCEEEECSCTTSC
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeec-cchhhhccCcEEEEecCCCCC
Confidence 478899999999999998889999999887 77777788888 67776666543211 011234568999998864
Q ss_pred -CHHHHHhhcCCCCcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEEEeCccCcc---cccCC---CCCcCcEEE
Q psy12791 132 -KIENLIKYIKPNTKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLVLDNTFLTA---YYQKS---LPWGVDIVL 200 (393)
Q Consensus 132 -d~~~l~~~l~~~~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~livDea~~~~---~~~~~---~~~~~di~~ 200 (393)
|+++++++. ++++|++++||||| |.+++ +++|.++|+++ |++||+|++|... ....+ +....|+++
T Consensus 125 ~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~ 201 (357)
T 3lws_A 125 MTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY 201 (357)
T ss_dssp CCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred cCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence 789998873 48999999999998 99887 88899999999 9999999998721 11111 112467889
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC--CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP--SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
.|+||+++|+.| ||++++ +++++.++......+... ....+..+...++....++++..++++.+.+.|+++++
T Consensus 202 ~s~sK~~~~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g 277 (357)
T 3lws_A 202 ISFYKGLGGIAG---AILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPG 277 (357)
T ss_dssp EESSSTTCCSSC---EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred EeccccCCCCce---EEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999965554 999887 889888876665544322 22222222222322223444556777888999988877
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhH
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~ 357 (393)
+.....|. .++++++.+++.. ...+.+.+.+...++.+..|..+. +
T Consensus 278 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~----~------------- 324 (357)
T 3lws_A 278 VHTTPEVP----------------VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK----D------------- 324 (357)
T ss_dssp EEEESSSC----------------SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEEC----S-------------
T ss_pred CeeccCCC----------------cceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccC----C-------------
Confidence 65222222 2578899886432 235566666665667666653211 1
Q ss_pred hhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 358 ~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+++|++++........+.+.++++.+
T Consensus 325 -----~~~~~r~~i~~~~~~~~~~~l~~al~~l 352 (357)
T 3lws_A 325 -----GYCSTEISVGDAYGELDQQTRDAGFARL 352 (357)
T ss_dssp -----SEEEEEEEBCTTGGGSCHHHHHHHHHHH
T ss_pred -----CceEEEEEecchhhhcCHHHHHHHHHHH
Confidence 1468999998765433344555555544
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=214.81 Aligned_cols=307 Identities=16% Similarity=0.151 Sum_probs=209.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.+...++|+++|++++.++.+++++|++++ .++..+ +++||+|++++|+|++ +...++..|++++.++.+
T Consensus 37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVS----TLNMIVLLGANPVMVDVDRDT 112 (393)
T ss_dssp SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHH----HHHHHHHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHh----HHHHHHHCCCEEEEEeccCCc
Confidence 4578899999999999998888888888888 777777 8999999999999986 445667789999998863
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCc-CcEEEEccc--c
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWG-VDIVLYSLT--K 205 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~-~di~~~S~s--K 205 (393)
|++++++.+++++++|+++ ||||.+.++++|.++|+++ |+++|+|++|+.+........+ .|+++.|+| |
T Consensus 113 ~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 113 LMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERY-GIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp CCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHH-TCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred CCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHc-CCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence 7899999998889998875 4899999999999999999 9999999999975322111234 899999999 7
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHhc----------------------C--CCCCHHHHHHHHhccCCHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNSM----------------------G--VVPSPFDCWLVTRGLKTLPCRLKE 261 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
+++ |.|+||++++++++.+.++...... | ...++..+.++...++.+....++
T Consensus 189 ~l~---~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~ 265 (393)
T 1mdo_A 189 NIT---CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 265 (393)
T ss_dssp SSC---SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ccc---cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 773 2379999997678888776543210 0 113455555555555566666677
Q ss_pred HHHHHHHHHHHHhhCCCcceEe-CCCCCCCcchHHHhhhcCCCcceEEEEEcCC--HHHHHHHHHhcCccccccccCCcc
Q psy12791 262 HERGSIEVAKFLESHPCVKGVL-HPGLPSHPNHELAKSQWSGTSGMLSFYVNGG--AEETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
..++.+.+.+.|.+.+ +. +. .+.. . ....+.+++|.++.. ......+.+.+...++.++.|..+
T Consensus 266 ~~~~~~~l~~~L~~~~-~~-~~~~~~~-~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~ 332 (393)
T 1mdo_A 266 RAAIAAQYHQAMADLP-FQ-PLSLPSW-E----------HIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRA 332 (393)
T ss_dssp HHHHHHHHHHHHHTSS-CE-ECCCCSS-C----------EECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCC
T ss_pred HHHHHHHHHHHHhcCC-cc-cccCCCC-C----------CCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCc
Confidence 7777888888888765 32 21 1100 0 011234688888410 012344555555456666655432
Q ss_pred ccccCccccc---CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 339 SLADLPAEMT---HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 339 s~~~~~~~~~---~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
... .+.... ....+.... ...+.+|++++...++++++.+.++|+++.+
T Consensus 333 ~~~-~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 333 AHT-QKYYRERFPTLTLPDTEW----NSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp GGG-SHHHHHHSTTCCCHHHHH----HHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ccc-ChhhhccCCccCChhHHH----HHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 100 000000 000111000 0146899999999999999999999987653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=212.57 Aligned_cols=304 Identities=16% Similarity=0.129 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------C
Q psy12791 61 RRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------K 132 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d 132 (393)
..++++.+++++|.++.+++++|++++ .++.++ +++||+|+++.|+|.+ +...++..|++++.++.+ |
T Consensus 44 ~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~d 119 (418)
T 2c81_A 44 ERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIA----TATAVLNVNALPVFVDVEADTYCID 119 (418)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH----HHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHh----HHHHHHHcCCEEEEEecCCCCCCcC
Confidence 889999999999999999999999888 777777 7899999999999996 445567889999998874 7
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc-cc-CCCCCcCcEEEEcc--ccccc
Q psy12791 133 IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY-YQ-KSLPWGVDIVLYSL--TKYMN 208 (393)
Q Consensus 133 ~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~-~~-~~~~~~~di~~~S~--sK~~~ 208 (393)
++++++.+++++++|+++ ||||...++++|.++|+++ |+++|+|++|+.+. +. .+...-.|+++.|| ||++
T Consensus 120 ~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~- 194 (418)
T 2c81_A 120 PQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEH-NLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVL- 194 (418)
T ss_dssp HHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-
T ss_pred HHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHC-CCEEEEECcccccCccCCEecccccceEEEeccCCccc-
Confidence 899999998889998864 5899999999999999999 99999999999875 32 12222236888888 9999
Q ss_pred CCCCceEEEEEecChHHHHHHHHHHHhc--------------C------C------CCCHHHHHHHHhccCCHHHHHHHH
Q psy12791 209 GHSDVVMGATVTNDDSLQARLKFLQNSM--------------G------V------VPSPFDCWLVTRGLKTLPCRLKEH 262 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~~~~~~~--------------~------~------~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
|+ | |+||++++++++.+.++...... . . ...+..+.+....++.+....++.
T Consensus 195 ~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~ 272 (418)
T 2c81_A 195 TA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIR 272 (418)
T ss_dssp CS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred CC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 56 7 89999996678888776544321 0 0 023344444445566677777777
Q ss_pred HHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCcc-ccc---cccC
Q psy12791 263 ERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLIF-RCA---ESLG 335 (393)
Q Consensus 263 ~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~~---~~~g 335 (393)
.++.+.+.+.|..++++.....+. . .. ...-.++.+.+++ .....+.+.+.|... ++. ++.|
T Consensus 273 ~~~~~~l~~~L~~~~g~~~~~~~~--~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~ 341 (418)
T 2c81_A 273 EKNAMFLNDALSKIDGIKVMKRPP--Q-VS--------RQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPP 341 (418)
T ss_dssp HHHHHHHHHHHTTSTTEEECCCCT--T-EE--------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred HHHHHHHHHHhccCCCcccCCCCC--C-Cc--------ccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccc
Confidence 788888888998776654211111 0 00 0001245577741 011233444544433 444 4444
Q ss_pred CccccccCcccccC------------------CCCChhhHhhcCCCCCeEEEEecCCC-hHHHHHHHHHHHHHhh
Q psy12791 336 GIESLADLPAEMTH------------------KSIPKETRDALGITDNLVRLSVGVEG-YTDLIADLDQALRKAC 391 (393)
Q Consensus 336 ~~~s~~~~~~~~~~------------------~~~~~~~~~~~g~~~~~iRls~~~~~-~~~~i~~l~~al~~~~ 391 (393)
... ....+..... ..++..+.. ..+.|||+++..+ ++++++.+.++|+++.
T Consensus 342 ~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 342 YLP-VHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA----SGQSIVIHHAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp CCC-GGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH----HHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred ccc-cccCchhcccccccccccccccccccccCCChHHHHH----HhCEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 311 1111100000 001111000 1368999999999 9999999999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=218.27 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=156.8
Q ss_pred CCchHHHHHHHHHHHh-CCC------cEEEe--ccHHH-HH-H--HHHHhcCCCCeEEEcCCCccchHHHHHHhcc----
Q psy12791 57 NNPTRRNLERCIASLE-EAK------HGLCY--SSGLG-AV-T--AVTHLLSAGDHIISGDDVYGGTYRYFAQVAP---- 119 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~-~~~------~~i~~--~~G~~-al-~--~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~---- 119 (393)
+..+..++|+++++++ |.+ +.|++ |+|.+ ++ . .+.+++.+||+|++++|+|.+ +...++
T Consensus 92 ~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~----~~~~~~~~~~ 167 (448)
T 3meb_A 92 PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPN----HYGIYDKVFN 167 (448)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTH----HHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHh----HHHHHHhhHH
Confidence 3467889999999987 764 56776 66655 56 4 345678899999999999985 555566
Q ss_pred cCCcEEEeeCC---C-----CHHHHHhhcC---CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCc
Q psy12791 120 KIGLEVDFVDL---R-----KIENLIKYIK---PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLT 185 (393)
Q Consensus 120 ~~g~~v~~~~~---~-----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~ 185 (393)
..|++++.++. + |++++++.+. ++++++++++||||||.+++ +++|.++|+++ |+++|+||+|..
T Consensus 168 ~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~ 246 (448)
T 3meb_A 168 KLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQG 246 (448)
T ss_dssp TTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred hCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEeccccc
Confidence 88999988876 2 7888988886 35788888999999999998 55589999999 999999999997
Q ss_pred ccccC------CC-----CCcCcEEEEcccccccCCCCceEEEE--Ee--------cCh----HHHHHHHHHHHhcCCCC
Q psy12791 186 AYYQK------SL-----PWGVDIVLYSLTKYMNGHSDVVMGAT--VT--------NDD----SLQARLKFLQNSMGVVP 240 (393)
Q Consensus 186 ~~~~~------~~-----~~~~di~~~S~sK~~~G~~G~r~G~~--~~--------~~~----~~~~~~~~~~~~~~~~~ 240 (393)
+.... ++ .....+++.|+||.+ |++|+|+||+ ++ +++ .+.+.+..........+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 325 (448)
T 3meb_A 247 FATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMS 325 (448)
T ss_dssp TSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred ccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCc
Confidence 55421 00 123458899999999 7999999998 77 545 55555555444444445
Q ss_pred CHHHHHHHHhccCC----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 241 SPFDCWLVTRGLKT----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 241 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+...+..+...+.. +...++++.++++.+.+.|+++
T Consensus 326 ~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 326 AIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp CHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555443 3334555666777777878754
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=223.83 Aligned_cols=169 Identities=22% Similarity=0.312 Sum_probs=130.3
Q ss_pred CCCCc-hHHHHHHHHHHHh-------CC----CcEEEeccHHHH-H-HHHHH-----hcCCCCeEEEcCCCccchHHHHH
Q psy12791 55 RSNNP-TRRNLERCIASLE-------EA----KHGLCYSSGLGA-V-TAVTH-----LLSAGDHIISGDDVYGGTYRYFA 115 (393)
Q Consensus 55 ~~~~~-~~~~lr~~la~~~-------~~----~~~i~~~~G~~a-l-~~~~~-----~~~~gd~vl~~~~~y~~~~~~~~ 115 (393)
.|+++ +..++++++++.+ +. +++|++|+|+++ + .++.. ++++||.|++++|+|++ |.
T Consensus 133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~----~~ 208 (546)
T 2zy4_A 133 NYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTP----YI 208 (546)
T ss_dssp SCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHH----HH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCcc----HH
Confidence 44444 5667888877643 22 368999999886 6 44544 47899999999999985 44
Q ss_pred Hh--cccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHH--HhCCCcEEEEeC
Q psy12791 116 QV--APKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVV--KQHPDILLVLDN 181 (393)
Q Consensus 116 ~~--~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~--~~~~~~~livDe 181 (393)
.. ....|++++.++.+ |++++++.+.+++++|++++||||||.+++ +++|.++| +++ +++||+||
T Consensus 209 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~-~~~ii~De 287 (546)
T 2zy4_A 209 EIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRP-DLMILTDD 287 (546)
T ss_dssp HHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCT-TCEEEEEC
T ss_pred HHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccC-CcEEEEeC
Confidence 44 34457888888763 688998888778999999999999999998 55677888 678 99999999
Q ss_pred ccCcccccC-CC---CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 182 TFLTAYYQK-SL---PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 182 a~~~~~~~~-~~---~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+|+++.... ++ ..+++++++||||.+ |++|+|+||++++++++++.+
T Consensus 288 ~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 288 VYGTFADDFQSLFAICPENTLLVYSFSKYF-GATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp TTGGGSTTCCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEEEESSCHHHHH
T ss_pred cchhhcccCcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEEECCHHHHHHH
Confidence 999865421 11 125789999999999 799999999999844466665
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=219.13 Aligned_cols=213 Identities=13% Similarity=0.104 Sum_probs=152.7
Q ss_pred CCchHHHHHHHHHHHh-CC------CcEEEe--ccHHH-HH-HHH--HHhcCCC-----CeEEEcCCCccchHHHHHHhc
Q psy12791 57 NNPTRRNLERCIASLE-EA------KHGLCY--SSGLG-AV-TAV--THLLSAG-----DHIISGDDVYGGTYRYFAQVA 118 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~-~~------~~~i~~--~~G~~-al-~~~--~~~~~~g-----d~vl~~~~~y~~~~~~~~~~~ 118 (393)
+..+..++|+++|+++ +. ++.|++ ++|.+ ++ .++ ..++.+| |+|+++.|+|++ +...+
T Consensus 72 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~----~~~~~ 147 (412)
T 1ajs_A 72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN----HNGVF 147 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH----HHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH----HHHHH
Confidence 4567789999999998 53 356666 66655 46 442 3456899 999999999985 56667
Q ss_pred ccCCcE-EEeeCC---C----CHHHHHhhcCC---CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccC
Q psy12791 119 PKIGLE-VDFVDL---R----KIENLIKYIKP---NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFL 184 (393)
Q Consensus 119 ~~~g~~-v~~~~~---~----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~ 184 (393)
+..|++ ++.++. + |++++++.+.+ +++++++++||||||.+++ +++|.++|+++ |+++|+||+|.
T Consensus 148 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~y~ 226 (412)
T 1ajs_A 148 TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQ 226 (412)
T ss_dssp HHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCT
T ss_pred HHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcccc
Confidence 788999 988887 3 78888888753 6778889999999999987 56789999999 99999999998
Q ss_pred cccccC------CCC-----CcCcEEEEcccccccCCCCceEEEEEe---cChH----HHHHHHHHHHhcCCCCCHHHHH
Q psy12791 185 TAYYQK------SLP-----WGVDIVLYSLTKYMNGHSDVVMGATVT---NDDS----LQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 185 ~~~~~~------~~~-----~~~di~~~S~sK~~~G~~G~r~G~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
.+.... ++. .+.++++.|+||.+ |++|+|+||+++ + ++ +.+.+...........++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (412)
T 1ajs_A 227 GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKE-PDSILRVLSQMQKIVRVTWSNPPAQGAR 304 (412)
T ss_dssp TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSS-HHHHHHHHHHHHHHHHTTTSSCCSHHHH
T ss_pred cccCCcccccchHHHHHhccCCcEEEEEeccccc-CCCCcceEEEEEecCC-HHHHHHHHHHHHHHHhcccCCCChHHHH
Confidence 764421 111 23459999999999 689999999999 5 66 4444444222222333444444
Q ss_pred HHHhccCC----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 247 LVTRGLKT----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 247 ~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+...++. +...++++.++...+.+.|+++
T Consensus 305 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1ajs_A 305 IVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL 344 (412)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433 2334555566777778888764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=211.65 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=152.4
Q ss_pred ccccCCCCchHHHHHHHHHHHh-CC------Cc--EEEeccHHH-HH-HHHHHhcC--CCCeEEEcCCCccchHHHHHHh
Q psy12791 51 FEYSRSNNPTRRNLERCIASLE-EA------KH--GLCYSSGLG-AV-TAVTHLLS--AGDHIISGDDVYGGTYRYFAQV 117 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~-~~------~~--~i~~~~G~~-al-~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~ 117 (393)
+.|. +..+..+||+++|+++ +. ++ .+++|+|++ ++ .++..+.. + |+|++++|+|+ .|...
T Consensus 66 ~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~----~~~~~ 138 (405)
T 3k7y_A 66 KPYL--LGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYI----NHVNM 138 (405)
T ss_dssp CCCC--TTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCH----HHHHH
T ss_pred CCCC--CCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCH----hHHHH
Confidence 4454 3468889999999986 31 13 457777766 47 66666666 8 99999999998 47788
Q ss_pred cccCCcEEEeeCC-C------CHHHHHhhcC--CCCcEEEEecC-CCCcccccC---HHHHHHHHHhCCCcEEEEeCccC
Q psy12791 118 APKIGLEVDFVDL-R------KIENLIKYIK--PNTKMVWIENP-TNPLMTVFD---VKAISAVVKQHPDILLVLDNTFL 184 (393)
Q Consensus 118 ~~~~g~~v~~~~~-~------d~~~l~~~l~--~~~~~v~l~~p-~nptG~~~~---~~~l~~l~~~~~~~~livDea~~ 184 (393)
++..|++++.+++ + |++++++.+. ++++++++++| |||||.+++ +++|.++|+++ ++++|+||+|.
T Consensus 139 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~ 217 (405)
T 3k7y_A 139 IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQ 217 (405)
T ss_dssp HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCT
T ss_pred HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcc
Confidence 8999999999987 1 7889988885 35688888665 899999998 66778889999 99999999999
Q ss_pred cccccC------CC----C-CcCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHHH----HHHhcCCCCCHHHHHH
Q psy12791 185 TAYYQK------SL----P-WGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLKF----LQNSMGVVPSPFDCWL 247 (393)
Q Consensus 185 ~~~~~~------~~----~-~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 247 (393)
++.+.. +. . ....++++||||.| |++|+|+||+++ .++++++.+.. .......+.+...+.+
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 296 (405)
T 3k7y_A 218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRI 296 (405)
T ss_dssp TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred cccCCCcccchHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 866431 01 1 23569999999999 699999999864 45776665532 2222222334444433
Q ss_pred HHhccCC----------HHHHHHHHHHHHHHHHHHHh
Q psy12791 248 VTRGLKT----------LPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 248 ~~~~~~~----------~~~~~~~~~~~~~~l~~~l~ 274 (393)
+...+.. +...++++.+++..+.+.|+
T Consensus 297 ~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~ 333 (405)
T 3k7y_A 297 LCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE 333 (405)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 22334556677788888887
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=209.34 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=206.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
+.+...++|+++|+++|.++.+++++|++++ .++.++ +++||+|+++.++|++ +...++..|++++.++.+
T Consensus 30 ~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~ 105 (375)
T 2fnu_A 30 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA----TANMLLESGYTPVFAGIKN 105 (375)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH----HHHHHHHTTCEEEECCBCT
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHh----HHHHHHHCCCEEEEeccCC
Confidence 3577899999999999988666667777778 777777 7899999999999996 444566789999999874
Q ss_pred ----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CCCcCcEEEEccc-
Q psy12791 132 ----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LPWGVDIVLYSLT- 204 (393)
Q Consensus 132 ----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~~~~di~~~S~s- 204 (393)
|++++++.+++++++|++++| ||.+.|+++|.++|+++ |+++|+|++|+.+..... ...-.|+++.|+|
T Consensus 106 ~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~ 181 (375)
T 2fnu_A 106 DGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKH-SLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA 181 (375)
T ss_dssp TSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHH-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred CCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHc-CCEEEEECccccCCeECCeeccccCCeEEEeCCC
Confidence 788999999888999888877 99999999999999999 999999999987653222 2211378888888
Q ss_pred -ccccCCCCceEEEEEe-cChHHHHHHHHHHHhc--------------C--CCCCHHHHHHHHhccCCHHHHHHHHHHHH
Q psy12791 205 -KYMNGHSDVVMGATVT-NDDSLQARLKFLQNSM--------------G--VVPSPFDCWLVTRGLKTLPCRLKEHERGS 266 (393)
Q Consensus 205 -K~~~G~~G~r~G~~~~-~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
|++ |+ | +|++++ +++++.++++...... + ....+..+.+....++.+....++..+++
T Consensus 182 ~K~~-~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2fnu_A 182 IKPI-TT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAA 257 (375)
T ss_dssp TSSS-CC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCc-cc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 56 7 667666 4577888776543211 1 13456666555555677777788888888
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH-HHHHHHHhcCccccccccCCccccccCcc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE-ETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
+.+.+.|++++++. +..+. .. ....+.++++.++.... ....+.+.|...++.++.+. ......+.
T Consensus 258 ~~l~~~L~~~~~~~-~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~-~p~~~~~~ 324 (375)
T 2fnu_A 258 LTYDRIFKDNPYFT-PLHPL-LK----------DKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHY-KPIYQYQL 324 (375)
T ss_dssp HHHHHHHTTCSSEE-ESGGG-CS----------SCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCC-CCGGGSHH
T ss_pred HHHHHHhhcCCCcc-ccCCC-CC----------CCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccc-cccccchh
Confidence 99999998876643 21110 00 01112456777742101 34455565554455544211 01000000
Q ss_pred cc---cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 346 EM---THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~---~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.. .....+.... ...++|||+++..+++++++.+.++|+++.
T Consensus 325 ~~~~~~~~~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 325 YQQLFNTAPLKSAED----FYHAEISLPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp HHHHHCCCCCHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCccCChHHHH----HHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 00 0000110000 113789999999999999999999988764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=213.41 Aligned_cols=256 Identities=22% Similarity=0.236 Sum_probs=195.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEE---eccHHHHH-HHHHHhcCCCCeEEEcC-CCccchHHHHH------HhcccCCcE
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLC---YSSGLGAV-TAVTHLLSAGDHIISGD-DVYGGTYRYFA------QVAPKIGLE 124 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~---~~~G~~al-~~~~~~~~~gd~vl~~~-~~y~~~~~~~~------~~~~~~g~~ 124 (393)
|+++..+++++.+++++|.+..++ +++|++++ .++.+++++||+|++++ +.|+++..... ..++..|++
T Consensus 62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~ 141 (431)
T 3ht4_A 62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG 141 (431)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence 456788999999999999986555 88999888 77788899999999998 99986432221 345668999
Q ss_pred EEeeCCC-----CHHHHHhhcCCCCcEEEEec-CCCCccccc---CHHHHHHHHHh--CCCcEEEEeCccCcccc-cCCC
Q psy12791 125 VDFVDLR-----KIENLIKYIKPNTKMVWIEN-PTNPLMTVF---DVKAISAVVKQ--HPDILLVLDNTFLTAYY-QKSL 192 (393)
Q Consensus 125 v~~~~~~-----d~~~l~~~l~~~~~~v~l~~-p~nptG~~~---~~~~l~~l~~~--~~~~~livDea~~~~~~-~~~~ 192 (393)
++.++.+ |++++++++++++++|++++ ||||+|... ++++|.++|++ + |+++++|++|+.+.. ..+.
T Consensus 142 ~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 142 YNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCCGG
T ss_pred EEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCCcc
Confidence 9999984 89999999999999999995 777777666 48899999999 9 999999999998764 4556
Q ss_pred CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc--CCC--CCHHHHHHHHhccCCHHHHHHHHHHHHHH
Q psy12791 193 PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVV--PSPFDCWLVTRGLKTLPCRLKEHERGSIE 268 (393)
Q Consensus 193 ~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
..++|++++|+||+++|..+..+||++++ +++++.++...... +.. .+...++.+.+.++.+..++++..+++..
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 299 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIF 299 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 67899999999999865334446999997 88988887654432 211 11222344556666677788899999999
Q ss_pred HHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcc
Q psy12791 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIF 328 (393)
Q Consensus 269 l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (393)
+.++|++++. .+ +|. +.. ++.+-++.|.+ ++.+...+|++.++..
T Consensus 300 l~~~L~~~g~--~v-~p~-~~~----------~~~~li~~i~l-~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 300 TAAFLEKLGM--NT-SPA-WNA----------PRTDLIQSVQF-DDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHTC--CE-ESC-TTS----------CCSSSCCEEEC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcC--Ee-cCC-CCC----------CCccEEEEEEe-CCHHHHHHHHHHHHhc
Confidence 9999987654 23 343 211 12234788888 5788999999988764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=225.12 Aligned_cols=314 Identities=13% Similarity=0.097 Sum_probs=200.6
Q ss_pred CCCC-CCCC--CCCc-cCCeeeeCCCCCCCCCccc-cCCCCchHHHHHHHHHHHhCCC-cEEEe-ccHHHHH-HHHHHhc
Q psy12791 23 QWRS-QCVI--PPII-LSTTFKQNTPGQPPQGFEY-SRSNNPTRRNLERCIASLEEAK-HGLCY-SSGLGAV-TAVTHLL 94 (393)
Q Consensus 23 ~~~~-~~~~--~p~~-~~~~~~~~~~~~~~~~~~y-~~~~~~~~~~lr~~la~~~~~~-~~i~~-~~G~~al-~~~~~~~ 94 (393)
.++| +++. +|++ +++.+.+++.+.+.....+ ..|+.+...++++.++++++.+ +.+++ ++|++++ .++..+.
T Consensus 46 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~ 125 (395)
T 1vef_A 46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFAR 125 (395)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHH
Confidence 4557 4554 6776 5555555443321111111 1245788899999999999754 45555 5556667 5555442
Q ss_pred --CCCCeEEEcCCCccchHHHHHHhcccCCcE------------EEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccccc
Q psy12791 95 --SAGDHIISGDDVYGGTYRYFAQVAPKIGLE------------VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 95 --~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~------------v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~ 160 (393)
.+||.|++++|+|++.+... +...|.+ +..++..|++++++.+++++++|++++++||||.++
T Consensus 126 ~~~~~~~vi~~~~~y~~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 202 (395)
T 1vef_A 126 AHTGRKKFVAAMRGFSGRTMGS---LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRP 202 (395)
T ss_dssp HHHSCCEEEEETTCCCCSSHHH---HHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEE
T ss_pred HHhCCCeEEEEcCCcCCCchhh---hhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccC
Confidence 57899999999997643222 2233432 566666799999999988899999888889999998
Q ss_pred C----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 161 D----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 161 ~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
| +++|.++|+++ |+++|+||+|+.+.. .... ....|++ |+||+++ . |+|+||++++ +++++.++
T Consensus 203 ~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~-g~~~G~~~~~-~~~~~~l~ 276 (395)
T 1vef_A 203 ATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALG-G-GVPLGVAVMR-EEVARSMP 276 (395)
T ss_dssp CCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG-T-TSSCEEEEEE-HHHHHTSC
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEccccc-C-CCceEEEEeh-HHHHhhhc
Confidence 8 99999999999 999999999995321 1111 1235665 8899994 4 8999999998 66776654
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
..........++..+..+...++.+. ...++..++.+.+.+.|++.+. ..+. ...+.+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~---------------~~~~~g~~~~ 340 (395)
T 1vef_A 277 KGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS-PKIR---------------EVRGMGLMVG 340 (395)
T ss_dssp TTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC-TTEE---------------EEEEETTEEE
T ss_pred cCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CceE---------------EEEEEEEEEE
Confidence 31111122345655555444444332 2345555666777777775432 0000 0011257889
Q ss_pred EEEcCCHHHHHHHHHhcC-ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLL-IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~-~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
+.++++ ...+.+.+. ..++.+..+ .++++|++++...++++++.+.++|
T Consensus 341 ~~~~~~---~~~l~~~l~~~~gi~v~~~---------------------------~~~~iRi~~~~~~~~~~i~~~~~~l 390 (395)
T 1vef_A 341 LELKEK---AAPYIARLEKEHRVLALQA---------------------------GPTVIRFLPPLVIEKEDLERVVEAV 390 (395)
T ss_dssp EEESSC---SHHHHHHHHHHHCEECEES---------------------------STTEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEcCh---HHHHHHHHHHHCCeEEecC---------------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 998532 233444443 334443321 1579999999999999999998888
Q ss_pred HHhh
Q psy12791 388 RKAC 391 (393)
Q Consensus 388 ~~~~ 391 (393)
+++.
T Consensus 391 ~~~l 394 (395)
T 1vef_A 391 RAVL 394 (395)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=219.37 Aligned_cols=318 Identities=15% Similarity=0.103 Sum_probs=210.0
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc-
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL- 94 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~- 94 (393)
.+++| +++ .+|++. ++.+.+++.+.+.. .+.++.++++...++++.++++++.++.+++++|++++ .++..+.
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~ 115 (395)
T 3nx3_A 36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARK 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 45678 776 678774 45555544332222 23345567889999999999999966677777777777 5554443
Q ss_pred ------CCCCeEEEcCCCccchHH---------HHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 95 ------SAGDHIISGDDVYGGTYR---------YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 95 ------~~gd~vl~~~~~y~~~~~---------~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
.++|+|++.+|+|++... .+.......+.++..++.+|++++++++++++++|++++++|++|.+
T Consensus 116 ~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~ 195 (395)
T 3nx3_A 116 YAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGIN 195 (395)
T ss_dssp HHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCE
T ss_pred HhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcc
Confidence 457999999999976431 12222334456788888889999999999889999999999999999
Q ss_pred cC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHH-HHH
Q psy12791 160 FD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QAR 228 (393)
Q Consensus 160 ~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~-~~~ 228 (393)
.+ +++|.++|+++ |+++|+||+|.++.. ... .....|++ |+||.++ . |+|+||++++ +++ .+.
T Consensus 196 ~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~-~-G~~~G~~~~~-~~~~~~~ 269 (395)
T 3nx3_A 196 PANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALG-C-GLSVGAFVIN-QKVASNS 269 (395)
T ss_dssp ECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGT-T-TSCCEEEEEC-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcchhHHhcCCCCCEE--Eeccccc-C-CCceEEEEEc-hhhhhhh
Confidence 87 99999999999 999999999985421 111 11234544 6889994 4 8999999997 776 666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh----hCCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 229 LKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE----SHPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~----~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
++..........++..+..+...++.+. ...++..++.+.+.+.|+ .++.+..+ ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~ 331 (395)
T 3nx3_A 270 LEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR------------------KG 331 (395)
T ss_dssp SCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EE
T ss_pred cCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------Ee
Confidence 6432222223445666555544443221 123334444444444443 33433221 12
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
.+.++++.+.+ ......+.+.+...++.+..+ .++++|++++...++++++.
T Consensus 332 ~g~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~---------------------------~~~~iRi~~~~~~t~e~i~~ 383 (395)
T 3nx3_A 332 LGFMQGLSLDK-SVKVAKVIQKCQENALLLISC---------------------------GENDLRFLPPLILQKEHIDE 383 (395)
T ss_dssp ETTEEEEEECT-TSCHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHH
T ss_pred EEEEEEEEeCC-cchHHHHHHHHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHH
Confidence 35788999853 223455555554444444322 15799999999999999999
Q ss_pred HHHHHHHhh
Q psy12791 383 LDQALRKAC 391 (393)
Q Consensus 383 l~~al~~~~ 391 (393)
+.++|+++.
T Consensus 384 ~l~~l~~~l 392 (395)
T 3nx3_A 384 MSEKLRKAL 392 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=219.07 Aligned_cols=214 Identities=11% Similarity=0.072 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHhCC-------CcEEEe--ccHHH-HH-HH--HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 57 NNPTRRNLERCIASLEEA-------KHGLCY--SSGLG-AV-TA--VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~-------~~~i~~--~~G~~-al-~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
+..+..++|+++|++++. ++.|++ ++|.+ ++ .+ +...+.+||+|++++|+|++ +...++..|+
T Consensus 71 ~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~----~~~~~~~~g~ 146 (412)
T 1yaa_A 71 GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN----HMAIFENQGL 146 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT----HHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCcc----HHHHHHHcCc
Confidence 346788999999998832 456776 76655 56 44 34556799999999999996 5666778899
Q ss_pred EEEeeCC-C------CHHHHHhhcCCC---CcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 EVDFVDL-R------KIENLIKYIKPN---TKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 ~v~~~~~-~------d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+++.++. + |++++++.+.++ +.++++++||||||.+++ +++|.++|+++ |+++|+||+|..+.+..
T Consensus 147 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~ 225 (412)
T 1yaa_A 147 KTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGD 225 (412)
T ss_dssp CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSC
T ss_pred eEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCc
Confidence 9998887 2 788998887643 345555999999999997 55788889999 99999999998654321
Q ss_pred ------CC-C----Cc---CcEEEEcccccccCCCCceEEEEE--e----cChH----HHHHHHHHHHhcCCCCCHHHHH
Q psy12791 191 ------SL-P----WG---VDIVLYSLTKYMNGHSDVVMGATV--T----NDDS----LQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 191 ------~~-~----~~---~di~~~S~sK~~~G~~G~r~G~~~--~----~~~~----~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++ . .. .+++++|+||.+ |++|+|+||++ + ++++ +.+.+...........+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 304 (412)
T 1yaa_A 226 LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAK 304 (412)
T ss_dssp HHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred ccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHH
Confidence 11 1 12 578999999999 68999999998 7 2366 6776665333333344555554
Q ss_pred HHHhccCC----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 247 LVTRGLKT----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 247 ~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
.+...++. +...++++.++.+.+.+.|+++
T Consensus 305 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 305 IVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444433 2334455556677777777654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=214.32 Aligned_cols=321 Identities=12% Similarity=0.104 Sum_probs=208.7
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS 95 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~ 95 (393)
..++| +++ .+|++. ++.+.+++.+.+... +.+..++++...++++.++++++.++.+++++|++++ .++..+..
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~ 118 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK 118 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 34667 554 356655 344444433322221 2234466788999999999999988777777777787 66655543
Q ss_pred -------CC-CeEEEcCCCccchHHHHHHhc---------ccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 96 -------AG-DHIISGDDVYGGTYRYFAQVA---------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 96 -------~g-d~vl~~~~~y~~~~~~~~~~~---------~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+| |+|++.+|+|++......... ...+..+..++..|++++++.+.+++++|+++ |+||||.
T Consensus 119 ~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~ 197 (406)
T 4adb_A 119 FAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGG 197 (406)
T ss_dssp HHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTT
T ss_pred HHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCC
Confidence 55 999999999987532222211 11224677788889999999999889999999 9999998
Q ss_pred cc-----CHHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 159 VF-----DVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 159 ~~-----~~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
++ ++++|.++|+++ |+++|+||+|+++... .+. ....|++ |+||++ | +|+|+||++++ +++++
T Consensus 198 ~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~-~-~G~r~G~~~~~-~~~~~ 271 (406)
T 4adb_A 198 VVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKAL-G-GGFPVGALLAT-EECAR 271 (406)
T ss_dssp SEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGG-G-TTSCCEEEEEC-HHHHH
T ss_pred CccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhh-c-CCCCeEEEEEc-HHHHh
Confidence 77 388999999999 9999999999854221 111 1235666 679999 5 79999999997 78877
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcc
Q psy12791 228 RLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG 305 (393)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 305 (393)
.+...........++..+..+...++.+ ....++..++.+.+.+.|+..... ++. ....++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~----------~~~~~~~g~ 337 (406)
T 4adb_A 272 VMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHR----YGL----------FSEVRGLGL 337 (406)
T ss_dssp TCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH----HCC----------EEEEEEETT
T ss_pred hhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----CCC----------ceEEEEEEE
Confidence 6654333333345566655554443321 445566666677777777643110 000 001122357
Q ss_pred eEEEEEcCCH-HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 306 MLSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 306 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
++++.+.+.. .....+.+.+...++.+..++ ++++|++++...++++++.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~e~i~~~~ 390 (406)
T 4adb_A 338 LIGCVLNADYAGQAKQISQEAAKAGVMVLIAG---------------------------GNVVRFAPALNVSEEEVTTGL 390 (406)
T ss_dssp EEEEEECTTTTTCHHHHHHHHHHTTEECEESS---------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC---------------------------CCeEEEECCCCCCHHHHHHHH
Confidence 8899985311 134455555544454443321 579999999998888888887
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
++|+++
T Consensus 391 ~~l~~~ 396 (406)
T 4adb_A 391 DRFAAA 396 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=217.25 Aligned_cols=324 Identities=13% Similarity=0.064 Sum_probs=203.2
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC--CccccC--C--CCchHHHH----HHHHHHHhCCCc-EEEeccHHHHH-HH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ--GFEYSR--S--NNPTRRNL----ERCIASLEEAKH-GLCYSSGLGAV-TA 89 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~--~~~y~~--~--~~~~~~~l----r~~la~~~~~~~-~i~~~~G~~al-~~ 89 (393)
+++| +++++|+ ++.+.+++.+.+.. .+.|.. + +.+....+ |+.+++++|.+. .+++++|++++ .+
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~ 101 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAV 101 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHH
Confidence 5567 7888887 55666665554321 223321 1 22322233 348999999884 57789999887 77
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCc--EEEeeCC------CCHHHHHhhcCC-CCcEEEEecCCCCccccc
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL--EVDFVDL------RKIENLIKYIKP-NTKMVWIENPTNPLMTVF 160 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~--~v~~~~~------~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~ 160 (393)
+..++++||+|++++|+|++.... ...++..|. ..+.++. .|++++++.+.+ ++++|++++|+|| ...
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~ 178 (407)
T 2dkj_A 102 YMALMEPGDTLMGMDLAAGGHLTH-GSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFW 178 (407)
T ss_dssp HHHHCCTTCEEEEECGGGTCCGGG-TCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCC
T ss_pred HHHhcCCCCEEEEecccccCccch-HHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCC
Confidence 777789999999999999863210 233444455 4555532 278999998874 7999999999998 678
Q ss_pred CHHHHHHHHHhCCCcEEEEeCccCcccc-cC----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 161 DVKAISAVVKQHPDILLVLDNTFLTAYY-QK----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 161 ~~~~l~~l~~~~~~~~livDea~~~~~~-~~----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
|+++|.++|+++ |+++|+||+|+.+.. .. +.. ..|++++|+||+++ |.|+||++++++++.+.++.....
T Consensus 179 ~l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~---g~~~G~~~~~~~~~~~~l~~~~~~ 253 (407)
T 2dkj_A 179 DFKAFREIADEV-GAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLR---GPRGGLILSNDPELGKRIDKLIFP 253 (407)
T ss_dssp CHHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGC---CCSCEEEEESCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHc-CCEEEEEccccccccccCccCCccc-cccEEEEeccccCC---CCCceEEEECCHHHHHHHHhhhcc
Confidence 999999999999 999999999997332 11 111 37999999999773 457899999757888888765533
Q ss_pred cC-CCCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEE
Q psy12791 236 MG-VVPSPFDCWLVTRGL-----KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSF 309 (393)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (393)
+. ...++.....+...+ +.+...+++..++.+.+.+.|++. ++. +..+ ...+.++++
T Consensus 254 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~---------------~~~~~~~~~ 316 (407)
T 2dkj_A 254 GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYR-IVTG---------------GTDNHLFLV 316 (407)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGG---------------SCSSSEEEE
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cce-eecC---------------CCCceEEEE
Confidence 32 233443322222222 234556667777888888888865 332 2111 113578888
Q ss_pred EEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC----ChHHHHHHHHH
Q psy12791 310 YVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE----GYTDLIADLDQ 385 (393)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~----~~~~~i~~l~~ 385 (393)
.++........+.+.+...++.+..|..+.....+ ..++++|+|++.. .++++++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~-----------------~~~~~iRis~~~~~~~~~~~~~i~~~~~ 379 (407)
T 2dkj_A 317 DLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPP-----------------RVTSGIRIGTPAITTRGFTPEEMPLVAE 379 (407)
T ss_dssp ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCT-----------------TTCSEEEEECHHHHHTTCCGGGHHHHHH
T ss_pred ECcccCCCHHHHHHHHHHcCceecCCcCccccccc-----------------cCCCceeeecccccccCCCHHHHHHHHH
Confidence 88521012334444454445555554321000000 1257899999753 45555666666
Q ss_pred HHHHh
Q psy12791 386 ALRKA 390 (393)
Q Consensus 386 al~~~ 390 (393)
+|+++
T Consensus 380 ~l~~~ 384 (407)
T 2dkj_A 380 LIDRA 384 (407)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=220.82 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=146.7
Q ss_pred CchHHHHHHHHHHHh-CC---CcEEEe--ccHHH-HH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLE-EA---KHGLCY--SSGLG-AV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~-~~---~~~i~~--~~G~~-al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..++|+++|+++ +. ++.|++ ++|.+ ++ .++..+ +.+||+|+++.|+|++ +...++..|.+++.
T Consensus 68 ~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~----~~~~~~~~g~~~~~ 143 (394)
T 2ay1_A 68 LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPN----HVSIMNFMGLPVQT 143 (394)
T ss_dssp SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH----HHHHHHHHTCCEEE
T ss_pred CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChh----HHHHHHHcCCceEE
Confidence 356789999999997 54 366665 66655 57 554444 3489999999999985 55667778999998
Q ss_pred eCC---C----CHHHHHhhcCC---CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc-----
Q psy12791 128 VDL---R----KIENLIKYIKP---NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ----- 189 (393)
Q Consensus 128 ~~~---~----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~----- 189 (393)
++. + |++++++.+.+ +++++++++||||||.+++ +++|.++|+++ |+++|+||+|+.+...
T Consensus 144 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~ 222 (394)
T 2ay1_A 144 YRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDA 222 (394)
T ss_dssp EECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHH
T ss_pred EecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCccccccCcccch
Confidence 887 3 78999888864 3677778999999999998 55788999999 9999999999975431
Q ss_pred CCCC-----CcCcEEEEcccccccCCCCceEEEEEe--cChHHHHHHH----HHHHhcCCCCCHHHHHHHHhccCC----
Q psy12791 190 KSLP-----WGVDIVLYSLTKYMNGHSDVVMGATVT--NDDSLQARLK----FLQNSMGVVPSPFDCWLVTRGLKT---- 254 (393)
Q Consensus 190 ~~~~-----~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---- 254 (393)
.++. ...+++++|+||++ |++|+|+||+++ +++++.+.+. ..........++..+..+...++.
T Consensus 223 ~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~ 301 (394)
T 2ay1_A 223 AGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR 301 (394)
T ss_dssp HHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHH
T ss_pred HHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHH
Confidence 0111 13458899999999 699999999998 3366544432 222222222244444444443332
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhh
Q psy12791 255 ------LPCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 255 ------~~~~~~~~~~~~~~l~~~l~~ 275 (393)
+....+++.++++.+.+.|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (394)
T 2ay1_A 302 ADWMAELEAVRSGMLRLREQLAGELRD 328 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233344555566666676664
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=208.79 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=152.2
Q ss_pred CCchHHHHHHHHHHHh---CC----CcEEEe--ccHHH-HH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCc
Q psy12791 57 NNPTRRNLERCIASLE---EA----KHGLCY--SSGLG-AV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~---~~----~~~i~~--~~G~~-al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
+.++..++|+++|+++ +. ++.|++ ++|++ ++ .++..+ +.+||+|+++.|+|++ +...++..|.
T Consensus 67 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~----~~~~~~~~g~ 142 (396)
T 2q7w_A 67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN----HKSVFNSAGL 142 (396)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH----HHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchh----HHHHHHHcCC
Confidence 4567889999999987 21 356665 66655 56 444333 4699999999999995 6667788899
Q ss_pred EEEeeCC---C----CHHHHHhhcCC---CCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccccc-
Q psy12791 124 EVDFVDL---R----KIENLIKYIKP---NTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ- 189 (393)
Q Consensus 124 ~v~~~~~---~----d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~- 189 (393)
+++.++. + |++++++.+.+ +++++++++||||||.+++ +++|.++|+++ |+++|+||+|..+...
T Consensus 143 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~ 221 (396)
T 2q7w_A 143 EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGL 221 (396)
T ss_dssp EEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCH
T ss_pred ceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCc
Confidence 9999987 3 78999998864 3678888999999999997 55788999999 9999999999875432
Q ss_pred --C--CCC-----CcCcEEEEcccccccCCCCceEEEEEe--cChH----HHHHHHHHHHhcCCCCCHHHHHHHHhccCC
Q psy12791 190 --K--SLP-----WGVDIVLYSLTKYMNGHSDVVMGATVT--NDDS----LQARLKFLQNSMGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 190 --~--~~~-----~~~di~~~S~sK~~~G~~G~r~G~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
. ++. ...+++++|+||.+ |++|+|+||+++ ++++ +.+.+...........++..+..+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 300 (396)
T 2q7w_A 222 EEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300 (396)
T ss_dssp HHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTS
T ss_pred cchhHHHHHHHhcCCcEEEEEeccccc-cccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcC
Confidence 1 111 13569999999999 799999999997 3353 444444322222333456666555555544
Q ss_pred H----------HHHHHHHHHHHHHHHHHHhhC
Q psy12791 255 L----------PCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 255 ~----------~~~~~~~~~~~~~l~~~l~~~ 276 (393)
. ....+++.++++.+.+.|++.
T Consensus 301 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (396)
T 2q7w_A 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEK 332 (396)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 223344456667777777764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=217.50 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHhCCCc--E-EEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 60 TRRNLERCIASLEEAKH--G-LCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~--~-i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
..+++++.+++++|.++ . +++|+|++ ++ .++.+++++||+|+++++.+.+.+ +...++..| +++.++.+
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~ 126 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS 126 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence 46789999999999873 4 57766655 47 777788899999998876644321 234556678 88777643
Q ss_pred ------CHHHHHhhcCCCCcEEEEecCCCCcccc-cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEccc
Q psy12791 132 ------KIENLIKYIKPNTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204 (393)
Q Consensus 132 ------d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~s 204 (393)
|.+++ .++++|++|++++|+||||.+ .|+++| + |+++++|++|+.+....++. ..|+++.|+|
T Consensus 127 ~~~~~~~~~~~--~i~~~t~~v~~~~~~n~tG~~~~~l~~i------~-~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~ 196 (362)
T 2c0r_A 127 NYMTLPKLQEI--QLQDNAAYLHLTSNETIEGAQFKAFPDT------G-SVPLIGDMSSDILSRPFDLN-QFGLVYAGAQ 196 (362)
T ss_dssp TTCSCCCGGGC--CCCTTEEEEEEESEETTTTEECSSCCCC------T-TSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred ccccCCCHHHc--ccCCCcCEEEEeCCcCccceeccccccc------C-CCEEEEEChhhccCCccchh-HCcEEEEecc
Confidence 23332 267789999999999999996 567766 7 99999999999765422222 2489999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHH------------HHhcCCCCCHHHHHHHHhccC------CHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFL------------QNSMGVVPSPFDCWLVTRGLK------TLPCRLKEHERGS 266 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 266 (393)
|++ |++| +||++++ +++++.++.. ......+.+...+..+...++ .+..++++..+++
T Consensus 197 K~~-g~~G--~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 272 (362)
T 2c0r_A 197 KNL-GPSG--VTVVIVR-EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKA 272 (362)
T ss_dssp TTT-CCSS--CEEEEEE-GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccc-cCcC--cEEEEEc-HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999 6999 9999997 6665544321 001222344444333333332 2455666777778
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
+.+.+.|++++.+..+..+. . ...+.+++|.++ +......+.+.|...++.+..|..
T Consensus 273 ~~l~~~L~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~-~~~~~~~~~~~L~~~gi~~~~g~~--------- 329 (362)
T 2c0r_A 273 SLIYDAIDQSGGFYRGCVDV-----D--------SRSDMNITFRLA-SEELEKEFVKASEQEGFVGLKGHR--------- 329 (362)
T ss_dssp HHHHHHHHTSTTSSEESSCG-----G--------GBCSSEEEEECS-CHHHHHHHHHHHHHTTEESCBCCT---------
T ss_pred HHHHHHHHHcCCccccCCCh-----H--------HcCCcEEEEEcC-CcchHHHHHHHHHHCCCeeccCCC---------
Confidence 88888888765321121110 0 011356888884 344566677777655554433211
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+.||+|++..+++++++.+.++|+++.
T Consensus 330 ----------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 330 ----------------SVGGLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp ----------------TTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred ----------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 02579999999999999999999998764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=211.42 Aligned_cols=283 Identities=13% Similarity=0.106 Sum_probs=189.2
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhc------CCCCe-EEEcCCCccchHHHHHHhcccC--CcEEE
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLL------SAGDH-IISGDDVYGGTYRYFAQVAPKI--GLEVD 126 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~------~~gd~-vl~~~~~y~~~~~~~~~~~~~~--g~~v~ 126 (393)
+...++++.+++++|.+ +.+++++|++ ++ .++..++ ++||+ |+++.++|+++...+...++.. |++++
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~ 150 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR 150 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE
Confidence 56789999999999986 5666666655 47 5666555 88987 4555667776544443334444 99999
Q ss_pred eeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 127 FVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 127 ~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
.++. ++++++.+.+++++|++++|+||||.++|+++|.++|+++ |+++|+|++|+.+...... ..+.|+++.|+||
T Consensus 151 ~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K 227 (416)
T 1qz9_A 151 LVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHEC-GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYK 227 (416)
T ss_dssp EESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH-TCEEEEECTTTTTTSCCCHHHHTCSEEEECSSS
T ss_pred EeCc--HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHc-CCEEEEEccccccCcCCChhhcCCCEEEecCcc
Confidence 9987 7888888888899999999999999999999999999999 9999999999864332111 1368999999999
Q ss_pred cccCCCCceE-EEEEecChHHHHHHHHHH-----------------------HhcCCCCCHHHHHH---HHhcc--CCHH
Q psy12791 206 YMNGHSDVVM-GATVTNDDSLQARLKFLQ-----------------------NSMGVVPSPFDCWL---VTRGL--KTLP 256 (393)
Q Consensus 206 ~~~G~~G~r~-G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~---~~~~~--~~~~ 256 (393)
+++|.+| + |+++++ +++.+.++... ....+..+...... ++..+ +.+.
T Consensus 228 ~l~~g~~--~~g~l~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 304 (416)
T 1qz9_A 228 YLNGGPG--SQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA 304 (416)
T ss_dssp TTCCCTT--CCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCC--CeEEEEEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 9854444 5 999997 66655443210 01112233333222 22222 3456
Q ss_pred HHHHHHHHHHHHHHHHHhhC-C--CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccc
Q psy12791 257 CRLKEHERGSIEVAKFLESH-P--CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAES 333 (393)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~-~--~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 333 (393)
...++..++.+.+.+.|++. + ++. +..+. .. ...+++++|.++ + ...+.+.|...++.+.
T Consensus 305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~~---~~---------~~~~~~~~~~~~-~---~~~l~~~l~~~gi~~~ 367 (416)
T 1qz9_A 305 SLRRKSLALTDLFIELVEQRCAAHELT-LVTPR---EH---------AKRGSHVSFEHP-E---GYAVIQALIDRGVIGD 367 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCE-ECSCS---SG---------GGBCSEEEEECT-T---HHHHHHHHHTTTEECE
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCeE-EeCCC---CH---------HHcCCEEEEecC-C---HHHHHHHHHhCCcEec
Confidence 66777778888888888764 4 432 22121 00 012467888884 3 3344444443333321
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec-CCChHHHHHHHHHHHHHhh
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG-VEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~l~~al~~~~ 391 (393)
. ..++++|+|++ +.+++++++.+.++|+++.
T Consensus 368 ~---------------------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 368 Y---------------------------REPRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp E---------------------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred c---------------------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 0 01579999998 5888888888888887653
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-26 Score=219.86 Aligned_cols=317 Identities=14% Similarity=0.101 Sum_probs=200.0
Q ss_pred CCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccc-cCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC-
Q psy12791 23 QWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEY-SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS- 95 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y-~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~- 95 (393)
.++| +++. +|++. ++.+.+++.+.+.....+ ..|+.+...++++.|++++|.++.+++++|++++ .++..+..
T Consensus 58 ~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~ 137 (420)
T 2pb2_A 58 EYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHY 137 (420)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 4567 4442 66654 444554443322211111 1245678899999999999876667777777787 66655543
Q ss_pred ------CC-CeEEEcCCCccchHHHHHHhcc---------cCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCccc-
Q psy12791 96 ------AG-DHIISGDDVYGGTYRYFAQVAP---------KIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMT- 158 (393)
Q Consensus 96 ------~g-d~vl~~~~~y~~~~~~~~~~~~---------~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~- 158 (393)
+| ++|++.+|+|++.......... .....+..++..|++++++.+.+++++|++++++|++|.
T Consensus 138 ~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 138 ACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp HHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred hhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCee
Confidence 67 4899999999764322221111 011136777778999999999888999999999998885
Q ss_pred cc---CHHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 159 VF---DVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 159 ~~---~~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
++ ++++|.++|+++ |++||+||+|..+... ... ....|++ |+||++ | +|+|+||++++ +++++.+
T Consensus 218 ~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l-~-~G~~iG~~~~~-~~l~~~l 291 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEH-QALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKAL-G-GGFPVSAMLTT-QEIASAF 291 (420)
T ss_dssp ECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGG-G-TTSCCEEEEEC-HHHHTTC
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eecccc-c-CCCceEEEEEh-HHHHHhh
Confidence 34 388999999999 9999999999753221 111 1245766 689999 5 68999999998 6777766
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHhhhcCCC
Q psy12791 230 KFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAKSQWSGT 303 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~~~~~~~ 303 (393)
+..........++..+..+...++.+ ....++..++.+.+.+.|++. +.+..+ ++.
T Consensus 292 ~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~ 353 (420)
T 2pb2_A 292 HVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI------------------RGM 353 (420)
T ss_dssp C----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE------------------EEE
T ss_pred cCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------Eec
Confidence 43222222234566655544433221 345566666667777777543 222111 223
Q ss_pred cceEEEEEcCCH-HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHH
Q psy12791 304 SGMLSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382 (393)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 382 (393)
|.+++|.+.... .....+.+.+...++.+..+ .++++||+++...++++++.
T Consensus 354 g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~---------------------------~~~~iRl~~~~~~t~eei~~ 406 (420)
T 2pb2_A 354 GLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA---------------------------GADVMRFAPSLVVEEADIHE 406 (420)
T ss_dssp TTEEEEEECGGGTTCHHHHHHHHHHTTEECEES---------------------------STTEEEECCCTTCCHHHHHH
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC---------------------------CCCEEEEECCCCCCHHHHHH
Confidence 678888884210 02445555554444444322 14789999988888888888
Q ss_pred HHHHHHHh
Q psy12791 383 LDQALRKA 390 (393)
Q Consensus 383 l~~al~~~ 390 (393)
+.++|+++
T Consensus 407 ~~~~l~~~ 414 (420)
T 2pb2_A 407 GMQRFAQA 414 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=216.89 Aligned_cols=275 Identities=13% Similarity=0.091 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHH-H-HH-HHHHHhcCC---CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGL-G-AV-TAVTHLLSA---GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~-~-al-~~~~~~~~~---gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
..+++++.+++++|.+ +.+++++|+ + ++ .++..++.+ ||.|+++.++|.. ...++..| +++.++.+
T Consensus 49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~-----~~~~~~~g-~~~~v~~~ 122 (360)
T 1w23_A 49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA-----LKEAKLLG-ETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH-----HHHHHTTS-EEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH-----HHHHHHhC-CeEEeecc
Confidence 4678999999999986 478887766 5 47 666777655 5667776655542 23356679 99888753
Q ss_pred ------CHHHHHh-hcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEccc
Q psy12791 132 ------KIENLIK-YIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204 (393)
Q Consensus 132 ------d~~~l~~-~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~s 204 (393)
|++++++ .+++++++|++++|+||||.++| + +++++ |+++|+|++|+.+....++. ..|++++|+|
T Consensus 123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~---i~~~~-~~~li~D~a~~~~~~~~~~~-~~di~~~s~s 195 (360)
T 1w23_A 123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--N---FPEIN-HAPLIADMSSDILSRPLKVN-QFGMIYAGAQ 195 (360)
T ss_dssp GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS--S---CCCCC-SSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc--c---ccccC-CceEEEechhhcCCCCcCcc-cCCEEEEEcc
Confidence 6678888 88888999999999999999988 3 33478 99999999998765322221 2389999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHH------------hcCCCCCHHHHHHHHhccC------CHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN------------SMGVVPSPFDCWLVTRGLK------TLPCRLKEHERGS 266 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 266 (393)
|++ |++| +||++++ ++++++++.... ......+......+...++ .+...+++..+++
T Consensus 196 K~~-~~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 196 KNL-GPSG--VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKA 271 (360)
T ss_dssp TTT-SCTT--CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ccc-CCCC--cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999 6888 8999998 666665432110 1112333333322222222 2445566777888
Q ss_pred HHHHHHHhhCCCcceEeC-CCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcc
Q psy12791 267 IEVAKFLESHPCVKGVLH-PGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~ 345 (393)
+.+.+.|++++++..... +. ...+.+++|.++ +......+++.+...++.+..|..
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~~~-------- 328 (360)
T 1w23_A 272 KIIYDTIDESNGFYVGHAEKG--------------SRSLMNVTFNLR-NEELNQQFLAKAKEQGFVGLNGHR-------- 328 (360)
T ss_dssp HHHHHHHHTTTTSSEESSCGG--------------GBCSSEEEEECS-SHHHHHHHHHHHHHTTEESCBCCT--------
T ss_pred HHHHHHHHHccCcccccCCch--------------hccCcEEEEEcC-CCccHHHHHHHHHHCCeeeecCCC--------
Confidence 888888987654311110 11 011348899884 444566677776555554433211
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+++||+|++..+++++++.+.++|+++.
T Consensus 329 -----------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 329 -----------------SVGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp -----------------TTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred -----------------CCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 14789999999999999999999998764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=203.44 Aligned_cols=304 Identities=19% Similarity=0.147 Sum_probs=198.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-------cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-------LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
+.+...++|+++|+++|.++.+++++|++++ .++.++ +++||+|+++.++|++ +...++..|++++.+
T Consensus 32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~----~~~~~~~~g~~~~~~ 107 (390)
T 3b8x_A 32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWST----TYYPLQQYGLRVKFV 107 (390)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHH----HHHHHHHTTCEEEEE
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHH----HHHHHHHcCCEEEEE
Confidence 4688999999999999999999999999987 777777 7889999999999986 344566789999998
Q ss_pred CCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEc
Q psy12791 129 DLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYS 202 (393)
Q Consensus 129 ~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S 202 (393)
+.+ |++++++.+++++++|++++ ++|...++++|.++|+++ |+++|+|++|+.+........+.+..+.+
T Consensus 108 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~~~~-~~~li~D~a~~~g~~~~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 108 DIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKIIGGR-DIILLEDNCESMGATFNNKCAGTFGLMGT 183 (390)
T ss_dssp CBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHHTTS-CCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred ecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHHHHc-CCEEEEECcCcccCEECCcccccccceEE
Confidence 875 78999999988899999874 668889999999999999 99999999999654432222344333344
Q ss_pred cccccc-CC-CCceEEEEEecChHHHHHHHHHHHhc-----------------------------CC--CCCHHHHHHHH
Q psy12791 203 LTKYMN-GH-SDVVMGATVTNDDSLQARLKFLQNSM-----------------------------GV--VPSPFDCWLVT 249 (393)
Q Consensus 203 ~sK~~~-G~-~G~r~G~~~~~~~~~~~~~~~~~~~~-----------------------------~~--~~~~~~~~~~~ 249 (393)
++|..+ ++ +| ++|+++++++++.++++...... |. ..++..++++.
T Consensus 184 ~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l 262 (390)
T 3b8x_A 184 FSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGI 262 (390)
T ss_dssp EECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHH
T ss_pred EEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHH
Confidence 444321 11 22 46999998667777665433210 11 14556666665
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-HHHHHHHHHhcCcc
Q psy12791 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-AEETRIFLESLLIF 328 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 328 (393)
..++.+....++..++...+.+.|++++++. + +.-.. ......+.+.++.. ....+.+.+.|...
T Consensus 263 ~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~--~~~~~-----------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~ 328 (390)
T 3b8x_A 263 EQLKKLPRFISVRRKNAEYFLDKFKDHPYLD-V--QQETG-----------ESSWFGFSFIIKKDSGVIRKQLVENLNSA 328 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE-E--CCCCS-----------BCCCCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-c--CCCCC-----------CcccEEEEEEecCcCcccHHHHHHHHHHC
Confidence 5566666677777788888888888776643 2 11000 00112356666410 01223344444333
Q ss_pred ccccccCCccccccC-ccc----cc-CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHH
Q psy12791 329 RCAESLGGIESLADL-PAE----MT-HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 329 ~~~~~~g~~~s~~~~-~~~----~~-~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al 387 (393)
++.++....-+.+.. +.. .. ...++..+.. ..+.|||+++...++++++.+.++|
T Consensus 329 gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 329 GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH----HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH----hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 454443111111111 110 00 1122222211 1468999999999999999998876
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-26 Score=214.40 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=199.1
Q ss_pred CCCC-CCC--CCCCcc-CCeeeeCCCCCCCCCccc-cCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC-
Q psy12791 23 QWRS-QCV--IPPIIL-STTFKQNTPGQPPQGFEY-SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS- 95 (393)
Q Consensus 23 ~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~~~y-~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~- 95 (393)
.++| +++ .+|+++ ++.+.+++.+.+.....+ ..|+.+...++++.+++++|.++.+++++|++++ .++..+..
T Consensus 41 ~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~ 120 (397)
T 2ord_A 41 AYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKY 120 (397)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 4567 444 267765 444554443321111111 1234578899999999999976666777777787 55555542
Q ss_pred -----C-CCeEEEcCCCccchHHHHHHhcccCCcE------------EEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 96 -----A-GDHIISGDDVYGGTYRYFAQVAPKIGLE------------VDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 96 -----~-gd~vl~~~~~y~~~~~~~~~~~~~~g~~------------v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
+ ++.|++.+|+|++.+. ..++..|.+ ++.++.+|++++++.+++++++|++++|+||||
T Consensus 121 ~~~~~~~~~~vi~~~~~yh~~~~---~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG 197 (397)
T 2ord_A 121 GKKKSEKKYRILSAHNSFHGRTL---GSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESG 197 (397)
T ss_dssp HHHHCTTCCEEEEEBTCCCCSSH---HHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTT
T ss_pred hhcCCCCCceEEEEcCCcCCCch---hhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCC
Confidence 4 4789999999976432 223334443 778888899999999988899999999999999
Q ss_pred c-ccC---HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 158 T-VFD---VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 158 ~-~~~---~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
. +++ +++|.++|+++ |+++|+||+|+.+... .+. ....|++ |+||++ | +|+|+||++++ +++.
T Consensus 198 ~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~-~-~G~r~G~~~~~-~~~~- 270 (397)
T 2ord_A 198 IVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGL-G-GGVPIGAVIVN-ERAN- 270 (397)
T ss_dssp CEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGG-G-TTSCCEEEEEC-STTC-
T ss_pred cccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCccchhhhhhCCCCCee--eecccc-C-CCcCeEEEEEc-hHhc-
Confidence 9 554 88999999999 9999999999853221 111 1125765 789999 5 78999999998 4454
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 228 RLKFLQNSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
.++..........++..+..+...++.+ ....++..++.+.+.+.|++. +.+..+ .
T Consensus 271 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~ 332 (397)
T 2ord_A 271 VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV------------------R 332 (397)
T ss_dssp CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------E
T ss_pred ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE------------------E
Confidence 4432111122234555555444433221 234556666667777777643 211100 1
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHH
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIA 381 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~ 381 (393)
+.+.++++.+++. .....+.+.+...++.+..| .++++|+|++...++++++
T Consensus 333 ~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~---------------------------~~~~iRis~~~~~~~e~i~ 384 (397)
T 2ord_A 333 GMGLMIGIQFREE-VSNREVATKCFENKLLVVPA---------------------------GNNTIRFLPPLTVEYGEID 384 (397)
T ss_dssp EETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHH
T ss_pred EEeEEEEEEECCh-HHHHHHHHHHHHCCCEEccC---------------------------CCCEEEEECCcCCCHHHHH
Confidence 1357888888531 12344555544334444332 1478999999888888888
Q ss_pred HHHHHHHHhh
Q psy12791 382 DLDQALRKAC 391 (393)
Q Consensus 382 ~l~~al~~~~ 391 (393)
.+.++|+++.
T Consensus 385 ~~~~~l~~~l 394 (397)
T 2ord_A 385 LAVETLKKVL 394 (397)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=216.17 Aligned_cols=317 Identities=15% Similarity=0.071 Sum_probs=192.3
Q ss_pred CCCC-CCCCC--CCc-cCCeeeeCCCCCCCCC-c-cccCCCCchHHHHHHHHHHHh-C-CCcEEEeccHHH-HH-HHHH-
Q psy12791 23 QWRS-QCVIP--PII-LSTTFKQNTPGQPPQG-F-EYSRSNNPTRRNLERCIASLE-E-AKHGLCYSSGLG-AV-TAVT- 91 (393)
Q Consensus 23 ~~~~-~~~~~--p~~-~~~~~~~~~~~~~~~~-~-~y~~~~~~~~~~lr~~la~~~-~-~~~~i~~~~G~~-al-~~~~- 91 (393)
.++| +++.+ |++ +++.+.+++.+.+... + ....++.+...+|+++||+++ + .++.+++++|++ ++ .++.
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~ 121 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI 121 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHH
Confidence 4566 45444 665 4455555443332211 1 112345688899999999999 5 336666666655 56 5544
Q ss_pred --HhcCCCCeEEEcCCCccchHHHHHHhccc-------CCc---EEEeeCCC----------CHHHHHhhcC-----CCC
Q psy12791 92 --HLLSAGDHIISGDDVYGGTYRYFAQVAPK-------IGL---EVDFVDLR----------KIENLIKYIK-----PNT 144 (393)
Q Consensus 92 --~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-------~g~---~v~~~~~~----------d~~~l~~~l~-----~~~ 144 (393)
.+.++| .|++.+|+|++........... .+. .++.++.+ |++++++.+. +++
T Consensus 122 a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 200 (426)
T 1sff_A 122 ARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI 200 (426)
T ss_dssp HHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCce
Confidence 456666 8999999998643222222111 111 25555543 5788888775 456
Q ss_pred cEEEEe-cCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CC--C---CCcCcEEEEcccccccCCCCc
Q psy12791 145 KMVWIE-NPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KS--L---PWGVDIVLYSLTKYMNGHSDV 213 (393)
Q Consensus 145 ~~v~l~-~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~--~---~~~~di~~~S~sK~~~G~~G~ 213 (393)
++|+++ +++| ||.+.+ +++|.++|+++ |++||+||+|+++... .. . ....|++ ||||++ |+ |+
T Consensus 201 ~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~-~~-Gl 274 (426)
T 1sff_A 201 AAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSI-AG-GF 274 (426)
T ss_dssp EEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGG-GT-SS
T ss_pred EEEEEecccCC-CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccc-cC-CC
Confidence 788774 5677 997776 99999999999 9999999999964221 11 1 1124544 899999 56 99
Q ss_pred eEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh----CCCcceEeCCCC
Q psy12791 214 VMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES----HPCVKGVLHPGL 287 (393)
Q Consensus 214 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l 287 (393)
|+||++++ +++++.+...........++..+..+...++.+.. ..++..++.+.+.+.|+. ++.+..+
T Consensus 275 riG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----- 348 (426)
T 1sff_A 275 PLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDV----- 348 (426)
T ss_dssp CCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE-----
T ss_pred ceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-----
Confidence 99999998 77777654211112223456665555444432221 334445555566666653 2221111
Q ss_pred CCCcchHHHhhhcCCCcceEEEEEcC-------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhc
Q psy12791 288 PSHPNHELAKSQWSGTSGMLSFYVNG-------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360 (393)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~ 360 (393)
.+.+.++++.+.+ +......+.+.+...++.+..|+.
T Consensus 349 -------------~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~----------------------- 392 (426)
T 1sff_A 349 -------------RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP----------------------- 392 (426)
T ss_dssp -------------EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-----------------------
T ss_pred -------------EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-----------------------
Confidence 1125788999841 234455666666544655554321
Q ss_pred CCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 361 g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++++|++++...++++++.+.++|+++
T Consensus 393 --~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 393 --YYNVLRILVPLTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp --TSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 1578999999888888888887777654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=214.65 Aligned_cols=287 Identities=11% Similarity=0.118 Sum_probs=193.5
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCCe---EEEcCCCccchHHHHHHhcccCCcEE-----Ee
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGDH---IISGDDVYGGTYRYFAQVAPKIGLEV-----DF 127 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd~---vl~~~~~y~~~~~~~~~~~~~~g~~v-----~~ 127 (393)
...+++++.+|+++|++ +.|++++|+++ + .++.+++++||. |+++.|+|++....+...++..|+++ ..
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~ 190 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI 190 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence 34577999999999987 67888888776 7 667777766554 99999999987766777778888774 23
Q ss_pred eCCC-----CHHHHHhhcC---CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcE
Q psy12791 128 VDLR-----KIENLIKYIK---PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDI 198 (393)
Q Consensus 128 ~~~~-----d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di 198 (393)
.+.+ |+++++++++ +++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+.....+ ..++|+
T Consensus 191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~-g~~vi~D~a~~~g~~~~~~~~~~~D~ 269 (465)
T 3e9k_A 191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK-GCYVGFDLAHAVGNVELYLHDWGVDF 269 (465)
T ss_dssp CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT-TCEEEEECTTTTTTSCCCHHHHTCCE
T ss_pred ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc-CCEEEEEhhhhcCCcCCchhhcCCCE
Confidence 3432 7899999985 5789999999999999999999999999999 9999999999876542222 247899
Q ss_pred EEEcccccccCCCCceEEEEEecChHHHHHHHHHHH---------h----------------cCCCCCHHHHHHHHhccC
Q psy12791 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN---------S----------------MGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 199 ~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------~----------------~~~~~~~~~~~~~~~~~~ 253 (393)
++.|++|+++|.|+ ++|+++++ +++.+.+..... . ..+..+......+...++
T Consensus 270 ~~~s~~K~l~~gp~-~~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~ 347 (465)
T 3e9k_A 270 ACWCSYKYLNAGAG-GIAGAFIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE 347 (465)
T ss_dssp EEECSSSTTCCCTT-CCCEEEEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred EEECcccccccCCC-ceEEEEEc-HHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence 99999999953343 47898887 666554321100 0 011333333333333332
Q ss_pred C-----HHHHHHHHHHHHHHHHHHHhhC----------CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHH
Q psy12791 254 T-----LPCRLKEHERGSIEVAKFLESH----------PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEET 318 (393)
Q Consensus 254 ~-----~~~~~~~~~~~~~~l~~~l~~~----------~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
. +...+++..++...+.+.|+++ +++. +..|. +....+++++|.++.+ .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~p~------------~~~~~g~~~~~~~~~~---~ 411 (465)
T 3e9k_A 348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN-IITPS------------HVEERGCQLTITFSVP---N 411 (465)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE-ECSCS------------SGGGBCSCEEEEECCT---T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE-EeCCC------------CHhhcccEEEEEecCC---H
Confidence 2 3445555666677777777653 3332 22121 0012357888888422 2
Q ss_pred HHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHHHHHhh
Q psy12791 319 RIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 319 ~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~al~~~~ 391 (393)
..+.+.|...++.+.. ..+++||+|+ +.++++++++.+.++|+++.
T Consensus 412 ~~l~~~L~~~Gi~v~~---------------------------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l 458 (465)
T 3e9k_A 412 KDVFQELEKRGVVCDK---------------------------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSIL 458 (465)
T ss_dssp CCHHHHHHTTTEECEE---------------------------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEec---------------------------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 2333433333433321 0158999999 79999999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=213.95 Aligned_cols=314 Identities=13% Similarity=0.050 Sum_probs=195.8
Q ss_pred CCCC-CCC--CCCCc-cCCeeeeCCCCCCCCCcccc-CCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc--
Q psy12791 23 QWRS-QCV--IPPII-LSTTFKQNTPGQPPQGFEYS-RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL-- 94 (393)
Q Consensus 23 ~~~~-~~~--~~p~~-~~~~~~~~~~~~~~~~~~y~-~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~-- 94 (393)
.++| +++ .++++ +++.+.+++.+.+.....++ .++.+...++++.|+++++.++.+++++|++++ .++..+.
T Consensus 66 ~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~ 145 (433)
T 1z7d_A 66 RYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKW 145 (433)
T ss_dssp EEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 4567 442 45776 66666665544322222222 245677889999999999877777777888887 5554332
Q ss_pred -------CCC-CeEEEcCCCccchHHHHHHhcccCC------------cEEEeeCCCCHHHHHhhc-CCCCcEEEEecCC
Q psy12791 95 -------SAG-DHIISGDDVYGGTYRYFAQVAPKIG------------LEVDFVDLRKIENLIKYI-KPNTKMVWIENPT 153 (393)
Q Consensus 95 -------~~g-d~vl~~~~~y~~~~~~~~~~~~~~g------------~~v~~~~~~d~~~l~~~l-~~~~~~v~l~~p~ 153 (393)
.+| |+|++.+++|++.... .....| ..+..++.+|++++++.+ .+++++|+++..+
T Consensus 146 ~~~~~g~~~gr~~vi~~~~~yhg~~~~---~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~ 222 (433)
T 1z7d_A 146 GYEVKKIPENMAKIVVCKNNFSGRTLG---CISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQ 222 (433)
T ss_dssp HHHTSCCCTTCCEEEEETTC-----------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSB
T ss_pred hhhccCCCCCCCeEEEEeCCcCCcchh---hhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCC
Confidence 467 9999999999864321 122222 356777888999999999 5678888887777
Q ss_pred CCccccc----CHHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcccccccCCCC-ceEEEEEecC
Q psy12791 154 NPLMTVF----DVKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSD-VVMGATVTND 222 (393)
Q Consensus 154 nptG~~~----~~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~ 222 (393)
|++|.+. ++++|.++|+++ |++||+||+|..+.. ... .....|++ |+||++ | +| +|+||++++
T Consensus 223 ~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-~-~G~~~~G~v~~~- 296 (433)
T 1z7d_A 223 GEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKAL-S-GGHYPISAVLAN- 296 (433)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGG-G-TTSSCCEEEEEC-
T ss_pred CCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccc-c-CCCCCeEEEEEC-
Confidence 8899876 599999999999 999999999985321 111 11245765 789999 5 68 899999998
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHH
Q psy12791 223 DSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELA 296 (393)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~ 296 (393)
+++++.+...........++..+..+...++.+. ...++..++.+.+.+.|++. +.+..
T Consensus 297 ~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--------------- 361 (433)
T 1z7d_A 297 DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRD--------------- 361 (433)
T ss_dssp HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE---------------
T ss_pred HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE---------------
Confidence 7777665431111122345666655555444332 23445555566666666542 21111
Q ss_pred hhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh
Q psy12791 297 KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376 (393)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~ 376 (393)
.++.+.++++.+.+.......+.+.+...++.+..+ ..+++|++++...+
T Consensus 362 ---~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------~~~~iRi~~~~~~t 411 (433)
T 1z7d_A 362 ---VRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------------------------HDKTIRLTPPLCIT 411 (433)
T ss_dssp ---EEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------------------------TTTEEEECCCTTCC
T ss_pred ---EEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCcCCC
Confidence 122367889998532012344555554334443321 15789999998888
Q ss_pred HHHHHHHHHHHHHh
Q psy12791 377 TDLIADLDQALRKA 390 (393)
Q Consensus 377 ~~~i~~l~~al~~~ 390 (393)
+++++.+.++|+++
T Consensus 412 ~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 412 KEQLDECTEIIVKT 425 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=208.34 Aligned_cols=305 Identities=16% Similarity=0.119 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHhc--------CCCCeEEEcCCCccc-------------hHHHHHH
Q psy12791 61 RRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHLL--------SAGDHIISGDDVYGG-------------TYRYFAQ 116 (393)
Q Consensus 61 ~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~~--------~~gd~vl~~~~~y~~-------------~~~~~~~ 116 (393)
..++|+++|+++|.+ +.+++++|++ ++ .++..++ ++||+|+++.|+|+. +...+..
T Consensus 63 ~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~ 142 (432)
T 3a9z_A 63 INTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEH 142 (432)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHH
Confidence 478999999999986 6777777755 57 5555554 589888888888753 1222344
Q ss_pred hcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCC----------cEEEEe
Q psy12791 117 VAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPD----------ILLVLD 180 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~----------~~livD 180 (393)
.++..|++++.++.+ |++++++.+++++++|++++|+||||.++|+++|.++|+++ + +++|+|
T Consensus 143 ~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~-~~~~~~~~~~~~~livD 221 (432)
T 3a9z_A 143 LVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKAL-NQIRAASGLPRVLVHTD 221 (432)
T ss_dssp HHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHH-HHHHHHHTCCCCEEEEE
T ss_pred HHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhc-CcccccccCCceEEEEE
Confidence 556679999999873 78999999988899999999999999999999999999999 8 999999
Q ss_pred CccCcccccCCCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-------HHhcCCCCCHHHHHHHHh
Q psy12791 181 NTFLTAYYQKSLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 181 ea~~~~~~~~~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 250 (393)
++|+.+.. +.+ .+.|+++.|+||++ |+ |+||++++++.....++.. ........+......+..
T Consensus 222 ea~~~~~~--~~~~~~~~~d~~~~s~~K~~-g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 295 (432)
T 3a9z_A 222 AAQALGKR--RVDVEDLGVDFLTIVGHKFY-GP---RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGK 295 (432)
T ss_dssp CTTTTTTS--CCCHHHHCCSEEEEEGGGTT-CC---SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHH
T ss_pred chhhhCCc--ccChhhcCCCEEEEehhHhc-CC---cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHH
Confidence 99987542 322 36789999999988 53 5999999843212222110 011112334433333322
Q ss_pred ccCC----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 251 GLKT----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 251 ~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
.++. +....++..++++.+.+.|++++++. +...+-.. .....+.+++|.+.+.......+.+.+.
T Consensus 296 al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (432)
T 3a9z_A 296 AADLVSENCETYEAHMRDIRDYLEERLEAEFGKR-IHLNSRFP---------GVERLPNTCNFSIQGSQLRGYMVLAQCQ 365 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-EEESSCCT---------TCCBCTTEEEEEECSTTCCHHHHHHHCS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCc-EEEeCCCC---------cccCCCCEEEEEeCCCCCcHHHHHHHhc
Confidence 2322 23344555566677777776543332 22111000 0012345788888531112334555553
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++....|..++.... ..+.......|.. +++||+|++..+++++++.+.++|+++.
T Consensus 366 --~i~~~~G~~~~~~~~-------~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 366 --TLLASVGASCHSDHE-------DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp --SEECBSSCGGGGGGT-------TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --CeEEeccccccCCCC-------CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 444555544322100 0000111122322 4899999999888888888888887653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=207.29 Aligned_cols=197 Identities=18% Similarity=0.084 Sum_probs=146.6
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEE
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHII 101 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl 101 (393)
++| +++.+|...++...+++... ...|. +.+...+||+++|++++.++.+++++|++++ .++..++++|| +
T Consensus 44 ylD~~~~~~~~~~~~~~~~a~~~~---~~~y~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i 116 (456)
T 2ez2_A 44 YIDLLTDSGTNAMSDKQWAGMMMG---DEAYA--GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--Y 116 (456)
T ss_dssp SEECSCSSSCCCCCHHHHHHHTTC---CCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--E
T ss_pred eeeeccccCCccCCHHHHHHhhcc---hhhcc--cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--E
Confidence 446 55566554444444444321 12243 4678899999999999998888889999888 77777789999 7
Q ss_pred EcCCCccchHHHHHHhcccCCcEEEeeCCC---------------CHHHHHhhcCCCC----cEEEEecCCC-CcccccC
Q psy12791 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---------------KIENLIKYIKPNT----KMVWIENPTN-PLMTVFD 161 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---------------d~~~l~~~l~~~~----~~v~l~~p~n-ptG~~~~ 161 (393)
++.|+|.+ .+...++..|++++.++.+ |++++++++.+++ ++|++++|+| |||.+++
T Consensus 117 ~~~~~~~~---~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~ 193 (456)
T 2ez2_A 117 VAGNMYFT---TTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVS 193 (456)
T ss_dssp EEESSCCH---HHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCC
T ss_pred eccccccc---hhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCC
Confidence 88899943 2455567789999988653 6889998887655 8999999999 9999998
Q ss_pred ---HHHHHHHHHhCCCcEEEEeCccCcc---------c-c-cCCC-------CCcCcEEEEcccccccCCCCceEEEEEe
Q psy12791 162 ---VKAISAVVKQHPDILLVLDNTFLTA---------Y-Y-QKSL-------PWGVDIVLYSLTKYMNGHSDVVMGATVT 220 (393)
Q Consensus 162 ---~~~l~~l~~~~~~~~livDea~~~~---------~-~-~~~~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~ 220 (393)
+++|.++|+++ |+++|+||+|+.+ . + ..+. ....|+++.|++|++ + +| |+||+++
T Consensus 194 ~~~l~~i~~la~~~-~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~-~-~~-~gG~~~~ 269 (456)
T 2ez2_A 194 MANMRAVRELTEAH-GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDC-L-VN-IGGFLCM 269 (456)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT-C-CS-SCEEEEE
T ss_pred HHHHHHHHHHHHHc-CCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccC-C-CC-ceeEEEE
Confidence 99999999999 9999999999863 1 1 1111 123577777888986 4 55 7999998
Q ss_pred cChHHHHHHHHHHH
Q psy12791 221 NDDSLQARLKFLQN 234 (393)
Q Consensus 221 ~~~~~~~~~~~~~~ 234 (393)
+++++++.++....
T Consensus 270 ~~~~~~~~~~~~~~ 283 (456)
T 2ez2_A 270 NDDEMFSSAKELVV 283 (456)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 55888888765543
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-25 Score=210.45 Aligned_cols=313 Identities=14% Similarity=0.046 Sum_probs=194.3
Q ss_pred CCCC-CCCC--CCCccC--CeeeeCCCCCCCCCccc--cCCCCchHHHHHHHHHHHhCCC--cEEEeccHHH-HH-HHHH
Q psy12791 23 QWRS-QCVI--PPIILS--TTFKQNTPGQPPQGFEY--SRSNNPTRRNLERCIASLEEAK--HGLCYSSGLG-AV-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~~--~~~~~~~~~~~~~~~~y--~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~-al-~~~~ 91 (393)
.++| +++. +|++++ +.+.+++.+.+.....| .+|+++...+++++++++++.+ +.+++++|.+ ++ .++.
T Consensus 43 ~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~ 122 (419)
T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIK 122 (419)
T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH
T ss_pred EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHH
Confidence 4567 5666 678764 66666554432222222 3467778899999999999974 5677766655 57 5555
Q ss_pred HhcC-CCCeEEEcCCCccchHHHHHHhcc----------cCCcEEEeeCCC---------------------CHHHHH-h
Q psy12791 92 HLLS-AGDHIISGDDVYGGTYRYFAQVAP----------KIGLEVDFVDLR---------------------KIENLI-K 138 (393)
Q Consensus 92 ~~~~-~gd~vl~~~~~y~~~~~~~~~~~~----------~~g~~v~~~~~~---------------------d~~~l~-~ 138 (393)
.+.. +||+|++.+|+|++.......... ....+++.++.+ |+++++ +
T Consensus 123 ~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 202 (419)
T 2eo5_A 123 VVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDY 202 (419)
T ss_dssp HHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHH
Confidence 4332 389999999999864332222111 112345666553 256788 7
Q ss_pred hcC-----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC--C---CCcCcEEEEcc
Q psy12791 139 YIK-----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS--L---PWGVDIVLYSL 203 (393)
Q Consensus 139 ~l~-----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~--~---~~~~di~~~S~ 203 (393)
.++ +++++|+++..|||||.+.+ +++|.++|+++ |+++|+||+|.++.. ... . ....|++ ||
T Consensus 203 ~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~ 279 (419)
T 2eo5_A 203 IFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKY-GILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TL 279 (419)
T ss_dssp HHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EE
T ss_pred HHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCcchhhHHhcCCCCCEE--Ee
Confidence 775 34555555444567898776 99999999999 999999999986421 111 1 1234554 79
Q ss_pred cccccCCCC-ceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 204 TKYMNGHSD-VVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 204 sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
||.+ |. | +|+||++++ ++++ .+. .........++..+..+...++......++..++.+.+.+.|+++ +..+
T Consensus 280 sK~~-~~-G~~riG~~~~~-~~~~-~~~-~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~ 352 (419)
T 2eo5_A 280 AKAL-GG-GIMPIGATIFR-KDLD-FKP-GMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDV 352 (419)
T ss_dssp CGGG-GT-TTSCCEEEEEE-GGGC-CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEE
T ss_pred cccc-cC-CccceEEEEEc-hHhh-cCC-cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhe
Confidence 9999 44 8 999999998 6665 552 111122334566665555555544445556666777777777653 1111
Q ss_pred eCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
.+.+.++++.+.++..... +.+.+...++.+..++
T Consensus 353 ------------------~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-------------------------- 387 (419)
T 2eo5_A 353 ------------------RGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-------------------------- 387 (419)
T ss_dssp ------------------EEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET--------------------------
T ss_pred ------------------EeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC--------------------------
Confidence 1235678888832222344 6666544454443311
Q ss_pred CCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 363 TDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 363 ~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
++++|+++++..++++++.+.++|+++.
T Consensus 388 -~~~lRis~~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 388 -RSAIRVIPPLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999888888888887653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=202.45 Aligned_cols=308 Identities=15% Similarity=0.079 Sum_probs=200.5
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHhcCCCCe
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHLLSAGDH 99 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~~~~gd~ 99 (393)
.++ +++.++ .+++.+.+++.+.+. .+.+.....+..+++++.+++++|.+ +.+++++| ++++ .++..++++||+
T Consensus 15 ~i~l~~~~~~-~~~~~v~~a~~~~~~-~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~ 92 (359)
T 1svv_A 15 PYSFVNDYSV-GMHPKILDLMARDNM-TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEA 92 (359)
T ss_dssp CEECSCSCSS-CCCHHHHHHHHHHTT-CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEE
T ss_pred eEEecCCCcC-CCCHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCE
Confidence 444 445555 455556555544322 12233334577889999999999976 56666655 4557 777778889999
Q ss_pred EEEcCCCccchHHHHHH--hcccCCcEEEeeCCC----CHHHHHhhcCCC-------CcEEEEecCCCCcccccC---HH
Q psy12791 100 IISGDDVYGGTYRYFAQ--VAPKIGLEVDFVDLR----KIENLIKYIKPN-------TKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~--~~~~~g~~v~~~~~~----d~~~l~~~l~~~-------~~~v~l~~p~nptG~~~~---~~ 163 (393)
|++++|+|++ +.. .++..|.+++.++.+ |++++++.++++ +++|++++| ||||.++| ++
T Consensus 93 vl~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~ 167 (359)
T 1svv_A 93 VIATQLGHIS----THETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELE 167 (359)
T ss_dssp EEEETTSHHH----HSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHH
T ss_pred EEEcccchHH----HHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHH
Confidence 9999999985 333 356789999999876 589999888655 899999999 79999999 88
Q ss_pred HHHHHHHhCCCcEEEEeCccCcc---cccCCCC-----CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTA---YYQKSLP-----WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~---~~~~~~~-----~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
+|.++|+++ |+++|+||+|..+ ....... ...|+++.|++|+. |+.| .|+++++ +++++.++.....
T Consensus 168 ~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~--~g~l~~~-~~~~~~~~~~~~~ 242 (359)
T 1svv_A 168 DISASCKEH-GLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFG--EALIILN-DALKPNARHLIKQ 242 (359)
T ss_dssp HHHHHHHHH-TCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSC--EEEEECS-GGGCTTHHHHHHH
T ss_pred HHHHHHHHh-CCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCc--eEEEEEc-ccHHHHHHHHHhc
Confidence 899999999 9999999999432 1111111 24689999999985 5655 8999987 7777766544322
Q ss_pred cCCC--CCHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 236 MGVV--PSPFDCWLVTRGLKT--LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 236 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
.+.. ........+...++. +...+++..++.+.+.+.| +.+++. +..|. .+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~-~~~~~----------------~~~~~~~~~ 304 (359)
T 1svv_A 243 RGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIR-LAWPS----------------ASNQLFPIL 304 (359)
T ss_dssp TTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCC-BSSCC----------------SSSEECBEE
T ss_pred CCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeE-EccCC----------------ccceEEEEc
Confidence 2221 121111111222322 3455666777778888888 444432 11121 135667777
Q ss_pred cCCHHHHHHHHHhcCcc-ccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 312 NGGAEETRIFLESLLIF-RCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~-~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+ . .+.+.+... ++.+ ++. . + ..++++|++++...++++++.+.++|+++
T Consensus 305 ~--~----~~~~~l~~~~gi~v-~~~----~--~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 354 (359)
T 1svv_A 305 E--N----TMIAELNNDFDMYT-VEP----L--K-----------------DGTCIMRLCTSWATEEKECHRFVEVLKRL 354 (359)
T ss_dssp E--H----HHHHHHTTTEECEE-EEE----E--T-----------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred C--H----HHHHHHHHhcCEEE-Eec----c--c-----------------CCCceEEEEccCcCCHHHHHHHHHHHHHH
Confidence 3 2 344444433 4333 110 0 0 11579999999999999999998888765
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 355 ~ 355 (359)
T 1svv_A 355 V 355 (359)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=211.80 Aligned_cols=317 Identities=14% Similarity=0.073 Sum_probs=203.0
Q ss_pred CCCC-CCC--CCCCc-cCCeeeeCCCCCCCCCcccc-CCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhc--
Q psy12791 23 QWRS-QCV--IPPII-LSTTFKQNTPGQPPQGFEYS-RSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLL-- 94 (393)
Q Consensus 23 ~~~~-~~~--~~p~~-~~~~~~~~~~~~~~~~~~y~-~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~-- 94 (393)
.++| +++ ..+++ .++.+.+++.+.+.....++ .++.+...++++.|++++|.+..+++++|++++ .++..+.
T Consensus 77 ~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~ 156 (439)
T 2oat_A 77 KYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKW 156 (439)
T ss_dssp EEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 4567 443 34565 66666665544322222222 234577899999999999876677777888887 5554432
Q ss_pred -------CCC-CeEEEcCCCccchHHHHHHhcccCC------------cEEEeeCCCCHHHHHhhcC-CCCcEEEEecCC
Q psy12791 95 -------SAG-DHIISGDDVYGGTYRYFAQVAPKIG------------LEVDFVDLRKIENLIKYIK-PNTKMVWIENPT 153 (393)
Q Consensus 95 -------~~g-d~vl~~~~~y~~~~~~~~~~~~~~g------------~~v~~~~~~d~~~l~~~l~-~~~~~v~l~~p~ 153 (393)
.+| |+|++.+++|++..... +...| .++..++.+|++++++.+. +++++|+++..+
T Consensus 157 ~~~~~g~~~g~~~vi~~~~~yhg~~~~~---~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~ 233 (439)
T 2oat_A 157 GYTVKGIQKYKAKIVFAAGNFWGRTLSA---ISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQ 233 (439)
T ss_dssp HHHTTCCCTTCCEEEEETTCCCCSSHHH---HTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSB
T ss_pred hhhccCCCCCCCeEEEEcCCCCCCCHhH---hhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCC
Confidence 356 89999999997643222 22222 4677888889999999994 667888877777
Q ss_pred CCccccc----CHHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcccccccCCCC-ceEEEEEecC
Q psy12791 154 NPLMTVF----DVKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSLTKYMNGHSD-VVMGATVTND 222 (393)
Q Consensus 154 nptG~~~----~~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~sK~~~G~~G-~r~G~~~~~~ 222 (393)
|++|.+. ++++|.++|+++ |+++|+||+|..+.. ... .....|++ |+||+++ +| +|+||++++
T Consensus 234 ~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~--~G~~~~G~v~~~- 307 (439)
T 2oat_A 234 GEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALS--GGLYPVSAVLCD- 307 (439)
T ss_dssp TTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--TTSSCCEEEEEC-
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCcchhHHHhCCCCcEE--Eeccccc--CCCCCeEEEEEC-
Confidence 8899877 599999999999 999999999975321 111 11235765 8899994 37 899999998
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhc
Q psy12791 223 DSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300 (393)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~ 300 (393)
+++++.+...........++..+..+...++.+. ...++..++.+.+.+.|+.+. ...+ ...
T Consensus 308 ~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~---------------~~~ 371 (439)
T 2oat_A 308 DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVV---------------TAV 371 (439)
T ss_dssp HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSC-TTTE---------------EEE
T ss_pred HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc-CCCc---------------EEE
Confidence 7777665431111222345666655555544332 234555566667777776531 1100 011
Q ss_pred CCCcceEEEEEcCCH-HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHH
Q psy12791 301 SGTSGMLSFYVNGGA-EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL 379 (393)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~ 379 (393)
++.|.++++.+.++. .....+.+.+...++.+..+ .++++|++++...++++
T Consensus 372 ~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~---------------------------~~~~iRi~~~~~~t~e~ 424 (439)
T 2oat_A 372 RGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT---------------------------HGDIIRFAPPLVIKEDE 424 (439)
T ss_dssp EEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS---------------------------SSSEEEECCCTTCCHHH
T ss_pred EeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECccCCCHHH
Confidence 224678899885320 12334555554334443321 15789999999999999
Q ss_pred HHHHHHHHHHhh
Q psy12791 380 IADLDQALRKAC 391 (393)
Q Consensus 380 i~~l~~al~~~~ 391 (393)
++.+.++|+++.
T Consensus 425 i~~~l~~l~~~l 436 (439)
T 2oat_A 425 LRESIEIINKTI 436 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=214.19 Aligned_cols=316 Identities=13% Similarity=0.058 Sum_probs=196.2
Q ss_pred CCCCC-CCCCC--CCc-cCCeeeeCCCCCCCCC--ccccCCCCchHHHHHHHHHHHhC--C-CcEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCVIP--PII-LSTTFKQNTPGQPPQG--FEYSRSNNPTRRNLERCIASLEE--A-KHGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~~~--p~~-~~~~~~~~~~~~~~~~--~~y~~~~~~~~~~lr~~la~~~~--~-~~~i~~~~G~~al-~~~~ 91 (393)
..++| +++.+ |++ .++.+.+++.+.+... +.+..++++...++++.|+++++ . ++.+++++|++++ .++.
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~ 122 (439)
T 3dxv_A 43 RELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYR 122 (439)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 35567 55544 555 4445554433322111 22345567888999999999984 4 3566666667777 5555
Q ss_pred Hh--cCCCCeEEEcCCCccchHHHHHHhcccCCcE--------------EEeeCCC----------CHHHHHhhc----C
Q psy12791 92 HL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLE--------------VDFVDLR----------KIENLIKYI----K 141 (393)
Q Consensus 92 ~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~--------------v~~~~~~----------d~~~l~~~l----~ 141 (393)
.+ ..+++.|++.++.|++.+. ......|.. +..++.+ |++++++.+ .
T Consensus 123 ~~~~~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (439)
T 3dxv_A 123 AIVKATGRSGVIAFAGAYHGCTV---GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPA 199 (439)
T ss_dssp HHHHHHSCCEEEEETTCCCCSSH---HHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCT
T ss_pred HHHHHhCCCEEEEECCCCCCCcH---HHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCC
Confidence 43 3466789998999876432 222222221 2344544 588999988 5
Q ss_pred CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-C-----CCCCcCcEEEEcccccccCCC
Q psy12791 142 PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-K-----SLPWGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 142 ~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~-----~~~~~~di~~~S~sK~~~G~~ 211 (393)
+++++|++++++|++|.+.+ +++|.++|++| |++||+||+|+++... . ......|++ |+||.+ | +
T Consensus 200 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~-~-~ 274 (439)
T 3dxv_A 200 GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH-GILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGL-G-G 274 (439)
T ss_dssp TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGG-G-T
T ss_pred CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchh-c-C
Confidence 56889999999999999998 99999999999 9999999999853211 1 111235665 899999 4 4
Q ss_pred CceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhh----CCCcceEeCC
Q psy12791 212 DVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLES----HPCVKGVLHP 285 (393)
Q Consensus 212 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~----~~~~~~v~~~ 285 (393)
|+|+||++++ +++++.+......... .++..+..+...++.+. ...++..++.+.+.+.|++ ++.+..+
T Consensus 275 G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 349 (439)
T 3dxv_A 275 GLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI--- 349 (439)
T ss_dssp TSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE---
T ss_pred CcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE---
Confidence 9999999997 7887766433222222 55666555544443221 2344444555555555543 3433221
Q ss_pred CCCCCcchHHHhhhcCCCcceEEEEEc-------CCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 286 GLPSHPNHELAKSQWSGTSGMLSFYVN-------GGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
.+.+.++++.+. ++......+.+.+...++.+..++
T Consensus 350 ---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------- 392 (439)
T 3dxv_A 350 ---------------RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG---------------------- 392 (439)
T ss_dssp ---------------EEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES----------------------
T ss_pred ---------------EEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC----------------------
Confidence 123577888772 134556666666654455544331
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++++|++++...++++++.+.++|+++
T Consensus 393 ---~~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 421 (439)
T 3dxv_A 393 ---MNGNVLEFTPPLTITETDIHKALDLLDRA 421 (439)
T ss_dssp ---TTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11589999999988888887777777654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-23 Score=194.04 Aligned_cols=304 Identities=13% Similarity=0.074 Sum_probs=201.5
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----- 131 (393)
+...++|+++|+++|.++.+++++|++++ .++.++ +++||+|+++.|+|+++ ...++..|++++.++.+
T Consensus 32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~v~~~~~~~~ 107 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIAS----VAPICYLKAKPVFIDCDETYNI 107 (394)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGG----THHHHHTTCEEEEECBCTTSSB
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH----HHHHHHcCCEEEEEEeCCCCCc
Confidence 45899999999999987667777777778 777777 89999999999999974 44456689999999864
Q ss_pred CHHHHHhhcCC---CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--C-C-CcCcEEEEccc
Q psy12791 132 KIENLIKYIKP---NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--L-P-WGVDIVLYSLT 204 (393)
Q Consensus 132 d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~-~-~~~di~~~S~s 204 (393)
|++++++.+++ ++++|++++ |||...++++|.++|+++ |+++|+|++|+.+..... . . .+.|+...|.+
T Consensus 108 d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~ 183 (394)
T 1o69_A 108 DVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKEN-DIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN 183 (394)
T ss_dssp CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred CHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHc-CCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence 78999988875 689999986 899999999999999999 999999999985332111 1 1 12344444447
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC--------------CCHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV--------------PSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (393)
|.+ | |.|+||++++++++++.++......... .++..+.++...++.+...+++..++.+.+.
T Consensus 184 K~l-~--~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~ 260 (394)
T 1o69_A 184 KII-T--TSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK 260 (394)
T ss_dssp SSS-C--CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccC-C--CCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 3 3479999996688888886653321100 2345555554456777777888888888888
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH--------------------HHHHHHHHhcCcccc
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA--------------------EETRIFLESLLIFRC 330 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~ 330 (393)
+.|++. +. ..+. ..... .. ..+++|.++.+. ...+.+.+.|...++
T Consensus 261 ~~L~~~--~~--~~~~-~~~~~--------~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI 326 (394)
T 1o69_A 261 EFLGEY--FS--FLDE-LENSR--------SN-RWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQI 326 (394)
T ss_dssp HHHTTT--EE--CCCC-CTTEE--------CC-CSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTC
T ss_pred HHhccc--cc--ccCC-CCCCc--------ce-eEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCC
Confidence 888764 21 1121 00000 01 125677774211 245556666655567
Q ss_pred ccccCCccccccCcccccCC--CCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 331 AESLGGIESLADLPAEMTHK--SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 331 ~~~~g~~~s~~~~~~~~~~~--~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.++.|..+.. +.|...... .++..... ....+|+..+..+++++++.+.++|+++.+
T Consensus 327 ~v~~~~~~~~-~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 327 ETRPLWKAMH-TQEVFKGAKAYLNGNSELF----FQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CCBCCCCCGG-GCGGGTTCEEEECSHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCccc-cchhhhccCCCCChHHHHH----hcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 6666543211 111110000 01111111 124677777999999999999999987753
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=206.76 Aligned_cols=315 Identities=11% Similarity=0.036 Sum_probs=192.0
Q ss_pred CCCCCCccCCeeeeCCCCCCCCCcc-ccCCCC--chHHHHHHHHHHHhCCC--cEEEe-ccHHH-HH-HHHHHhcCCCCe
Q psy12791 28 CVIPPIILSTTFKQNTPGQPPQGFE-YSRSNN--PTRRNLERCIASLEEAK--HGLCY-SSGLG-AV-TAVTHLLSAGDH 99 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~~~~~-y~~~~~--~~~~~lr~~la~~~~~~--~~i~~-~~G~~-al-~~~~~~~~~gd~ 99 (393)
.+..|..+++.+.+++.+....... +.++++ +..+++|+.+|+++|.+ +.+++ ++|++ ++ .++.+++++| .
T Consensus 44 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v 122 (398)
T 2fyf_A 44 FGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-S 122 (398)
T ss_dssp CCSSSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-E
T ss_pred ccCCCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-e
Confidence 4456666776777766542101111 123322 34678999999999986 46776 66655 57 6777788887 2
Q ss_pred EEEcCCCccchHHHHHHhcccC--CcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEE
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKI--GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILL 177 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~--g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~l 177 (393)
+++....|... +...+... |.+++.++.++-......+.+++++|++++|+||||.++|+++|.++ + |+++
T Consensus 123 ~~v~~~~~~~~---~~~~~~~~~~g~~~~~v~~~~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~-~~~v 195 (398)
T 2fyf_A 123 LHLTYGEFSAK---FASAVSKNPFVGEPIIITSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---D-DALV 195 (398)
T ss_dssp EEEECSHHHHH---HHHHHHHCTTSCCCEEEECCTTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C--CEE
T ss_pred EEEeCCHHHHH---HHHHHHHhCCCCceEEEecCCCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---c-CCeE
Confidence 33344444321 12223333 77777776641000111356679999999999999999999888876 7 9999
Q ss_pred EEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH---------------------hc
Q psy12791 178 VLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN---------------------SM 236 (393)
Q Consensus 178 ivDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~ 236 (393)
|+|++|+.+.....+ .+.|+++.|+||++ |++| ++||++++ +++++.++.... ..
T Consensus 196 ivD~a~~~~~~~~~~-~~~di~~~s~sK~~-~~~g-g~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (398)
T 2fyf_A 196 VIDATSGAGGLPVDI-AETDAYYFAPQKNF-ASDG-GLWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQT 271 (398)
T ss_dssp EEECTTTTTTSCCCG-GGCSEEEECTTSTT-CSCS-SEEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCC
T ss_pred EEEeccccCCcccCc-ccCcEEEEecCccc-CCCC-ceEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCC
Confidence 999999876532222 24789999999999 5675 49999997 788777643210 01
Q ss_pred CCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 237 GVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
....+...+..+...++. +....++..++++.+.+.|++++++. +..+. +. ...+.+++|.
T Consensus 272 ~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----~~--------~~~~~~~~~~ 338 (398)
T 2fyf_A 272 YNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTT-PFVTD----PG--------LRSQVVGTID 338 (398)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEE-ESCCS----GG--------GBCSSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCce-eccCC----hh--------hcCCcEEEEE
Confidence 122333332222222221 45566677778888888998776543 21101 00 0112388998
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++. ......+.+.|...++.+..|.. ...++++|+|++..+++++++.+.++|+++
T Consensus 339 ~~~-~~~~~~l~~~L~~~gI~v~~g~~-----------------------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 339 FVD-DVDAGTVAKILRANGIVDTEPYR-----------------------KLGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp ECT-TSCHHHHHHHHHHTTCBCCSCCT-----------------------TTCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHCCcEEecCcc-----------------------cCCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 842 11233444544433555443310 011579999999999999999999998876
Q ss_pred h
Q psy12791 391 C 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 395 l 395 (398)
T 2fyf_A 395 V 395 (398)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=209.03 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=151.1
Q ss_pred HHHHHHHHHhCCC---cE---EEeccHHHHH-HHHHHhcCCC--------CeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 63 NLERCIASLEEAK---HG---LCYSSGLGAV-TAVTHLLSAG--------DHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 63 ~lr~~la~~~~~~---~~---i~~~~G~~al-~~~~~~~~~g--------d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
++++.+++++|.+ +. +++++|++++ .++.++..+| |+|+++.++|.+ +...++..|++++.
T Consensus 143 ~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~----~~~~~~~~G~~v~~ 218 (514)
T 3mad_A 143 EVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAA----FDKAAQYFGIKLVR 218 (514)
T ss_dssp HHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTH----HHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchH----HHHHHHHcCCeeEE
Confidence 4556668888877 44 5555556667 6666666655 899999999985 66777788999999
Q ss_pred eCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---------CCC-
Q psy12791 128 VDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---------KSL- 192 (393)
Q Consensus 128 ~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---------~~~- 192 (393)
++.+ |++++++++++++++|++++|+||||.+.|+++|.++|+++ |+++|+|++|+.+... .++
T Consensus 219 v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~-~i~livDea~~~~~~~~~~~~g~~~~~~~ 297 (514)
T 3mad_A 219 TPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH-GIGCHVDACLGGFILPWAERLGYPVPPFD 297 (514)
T ss_dssp ECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH-TCEEEEECTTTTTTHHHHHHTTCCCCCCS
T ss_pred eeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh-CCeEEEecccccccchhHHhcCCCCCccc
Confidence 9976 89999999998999999999999999999999999999999 9999999999875431 112
Q ss_pred --CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc----------CCCCCH---HHHHHHHhcc--CCH
Q psy12791 193 --PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM----------GVVPSP---FDCWLVTRGL--KTL 255 (393)
Q Consensus 193 --~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~--~~~ 255 (393)
..+.|+++.|++|++.|+ .++|+++++++.+..........+ .+.... ..++.+.+.+ ..+
T Consensus 298 ~~~~g~d~~~~s~~K~l~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~ 375 (514)
T 3mad_A 298 FRLEGVTSVSADTHKYGYGA--KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGY 375 (514)
T ss_dssp TTSTTCCEEEECTTTTTCCC--SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEECchhccCCC--CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHH
Confidence 247899999999996444 458999998554433110000000 111111 2223333222 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
...+++..++++.+.+.|++++++.
T Consensus 376 ~~~~~~~~~~~~~l~~~L~~~~g~~ 400 (514)
T 3mad_A 376 LDATRRILQAADRLKAGVRAIPSLK 400 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 5567777788888999998776654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=209.43 Aligned_cols=274 Identities=15% Similarity=0.183 Sum_probs=178.5
Q ss_pred HHHHHHHHHhCCC---cEEEeccH-HHHH-HHHHHhcC-----CC---CeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 63 NLERCIASLEEAK---HGLCYSSG-LGAV-TAVTHLLS-----AG---DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 63 ~lr~~la~~~~~~---~~i~~~~G-~~al-~~~~~~~~-----~g---d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
++++.+++++|.+ +.+++++| ++++ .++.++.+ +| |+|+++.++|.+ +...++..|++++.++
T Consensus 111 ~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~----~~~~~~~~G~~~~~v~ 186 (497)
T 3mc6_A 111 EVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAG----FDKAAYYFGMKLRHVE 186 (497)
T ss_dssp HHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHH----HHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHH----HHHHHHHcCCeEEEEe
Confidence 4556677788876 45555555 5566 66655543 45 899999999985 6677788899999998
Q ss_pred CC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc---------C-CC-
Q psy12791 130 LR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ---------K-SL- 192 (393)
Q Consensus 130 ~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~---------~-~~- 192 (393)
.+ |++++++++++++++|++++|+||||.+.|+++|.++|+++ |+++|+|++|+.+... . ++
T Consensus 187 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~-g~~livD~a~~~~~~~f~~~~~~~~~~~~~ 265 (497)
T 3mc6_A 187 LDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY-KLPLHVDSCLGSFIVSFMEKAGYKNLPLLD 265 (497)
T ss_dssp BCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT-TCCEEEETTTTHHHHGGGTTTTCCSCCCCS
T ss_pred cCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh-CCEEEEECcchhhhhhhhhhhcccCCcccc
Confidence 64 58899999998999999999999999999999999999999 9999999999854321 1 12
Q ss_pred --CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc-CC---CCC---------HHHHHHHHhcc--CCH
Q psy12791 193 --PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GV---VPS---------PFDCWLVTRGL--KTL 255 (393)
Q Consensus 193 --~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~---~~~---------~~~~~~~~~~~--~~~ 255 (393)
..++|+++.|++|++.|+. ++|+++++++.+..........+ +. ... ...++.+.+.+ +.+
T Consensus 266 ~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~ 343 (497)
T 3mc6_A 266 FRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGY 343 (497)
T ss_dssp TTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHH
Confidence 2478999999999975454 48999998544432211000110 11 000 22233333332 224
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 256 PCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
....++..++++.+.+.|++ ++++..+..+ .++++.|...+ .....+.+.|...++.+..
T Consensus 344 ~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-----------------~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v~~ 404 (497)
T 3mc6_A 344 IESCQEIVGAAMKFKKYIQENIPDLDIMGNP-----------------RYSVISFSSKT--LNIHELSDRLSKKGWHFNA 404 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-----------------CSSEEEEECTT--TTHHHHHHHHHTTTCBCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------CeeEEEEeCCC--CCHHHHHHHHHhCCEEEec
Confidence 55667777888899999988 5765422112 24677777642 2234455555443443322
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+. .+..+|++++ ..++++++.+.++|++
T Consensus 405 ~~--------------------------~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 405 LQ--------------------------KPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp CC--------------------------SSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred CC--------------------------CCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 11 1346789987 4455555555555443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=194.36 Aligned_cols=288 Identities=14% Similarity=0.082 Sum_probs=186.8
Q ss_pred chHHHHHHHHHHHhCCCcEEEec-cHHHHHHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCC--cEEEeeCC-----
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYS-SGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG--LEVDFVDL----- 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~-~G~~al~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g--~~v~~~~~----- 130 (393)
...+++++.+++++|.++.++++ +|++++.+++..+.+||+|++++++|++.. +...++..| .+++.++.
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~ 112 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTED 112 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEecccccc
Confidence 45678899999999988767665 666667444456789999999999987632 334445555 46666542
Q ss_pred ---------CCHHHHHhhcC-CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCCCC---C
Q psy12791 131 ---------RKIENLIKYIK-PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKSLP---W 194 (393)
Q Consensus 131 ---------~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~~~---~ 194 (393)
.|++++++.+. +++++|++++++||||.++| +++|.++|+++ |+++|+|++++ +. .++. .
T Consensus 113 ~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g~--~~~~~~~~ 188 (379)
T 3ke3_A 113 TEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-GC--VWLDMKEL 188 (379)
T ss_dssp CSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-TT--CCCCHHHH
T ss_pred ccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-CC--cccccccc
Confidence 37899999885 47999999999999999999 99999999999 99999999997 43 3333 3
Q ss_pred cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH----------------H-hcC-----CCCCHHHHHHHHhcc
Q psy12791 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ----------------N-SMG-----VVPSPFDCWLVTRGL 252 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~----------------~-~~~-----~~~~~~~~~~~~~~~ 252 (393)
+.|+++.|++|+++|++| +|+++++ +++++.+.... . ..+ .+.+....+.+...+
T Consensus 189 ~~d~~~~s~~K~l~~~~g--~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal 265 (379)
T 3ke3_A 189 GIDVLISAPQKGWSSTPC--AGLVMLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAI 265 (379)
T ss_dssp TCSEEEECTTTTTCSCCC--EEEEEEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHH
T ss_pred CCCEEEecchhhcCCCCc--eEEEEEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHH
Confidence 789999999999977777 9999997 77777664210 0 011 133333333222332
Q ss_pred C-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCc
Q psy12791 253 K-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLI 327 (393)
Q Consensus 253 ~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (393)
+ .+....++..+..+.+.+.|+++ ++. +..+. . ...+.+..+.+ ++.+.. +.+.|..
T Consensus 266 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~-~~~~~--~-----------~~~~~i~~~~~-~~~~~~--~~~~L~~ 327 (379)
T 3ke3_A 266 LEAKEIGFDILRDAQWELGNRVRKVLTDK-GIE-SVAAE--G-----------FEAPGVVVSYT-ERDDMH--KGSAFAE 327 (379)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSBCT--T-----------CBCSSEEEEEC-SCHHHH--SSHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCE-ecCCc--c-----------ccCceEEEEcc-CCcchH--HHHHHHH
Confidence 2 23445556666777777777765 222 11111 0 00123444444 333221 1233333
Q ss_pred cccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 328 ~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.++.++.|..++.. .+ ...+.+|+|++..+++++++.+.++|+++.
T Consensus 328 ~Gi~v~~g~~~~~~-~~-----------------~~~~~lRis~~~~~t~~di~~~~~~l~~~l 373 (379)
T 3ke3_A 328 AGLQIAAGVPLKVG-EP-----------------DNFKTFRLGLFGLDKLTDIDGTVERFEKAL 373 (379)
T ss_dssp TTCCCEECCCCSSC-CC-----------------TTCCEEEEECCSHHHHTCHHHHHHHHHHHH
T ss_pred CCeEEeCCcccccc-cc-----------------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 35555544322110 00 125799999998888888888888877653
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=201.49 Aligned_cols=289 Identities=13% Similarity=0.006 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhCCC-c-----EEEecc-HHHHH-HHHHHhcC--------CC-----CeEEEcCCCccchHHHHHHhccc
Q psy12791 62 RNLERCIASLEEAK-H-----GLCYSS-GLGAV-TAVTHLLS--------AG-----DHIISGDDVYGGTYRYFAQVAPK 120 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~-----~i~~~~-G~~al-~~~~~~~~--------~g-----d~vl~~~~~y~~~~~~~~~~~~~ 120 (393)
.++++.+++++|.+ + .+++++ |++++ .++.++.. +| ++|++++ +|. .+...++.
T Consensus 84 ~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~----~~~~~~~~ 158 (452)
T 2dgk_A 84 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQI----CWHKFARY 158 (452)
T ss_dssp HHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCH----HHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcH----HHHHHHHH
Confidence 45666678889986 2 244544 45566 55555432 55 5899999 876 46777888
Q ss_pred CCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHh------CCCcEEEEeCccCcccc
Q psy12791 121 IGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ------HPDILLVLDNTFLTAYY 188 (393)
Q Consensus 121 ~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~------~~~~~livDea~~~~~~ 188 (393)
.|++++.++.+ |+++++++++++|++|++++|+||||.+.|+++|.++|++ + ++++++|++|+.+..
T Consensus 159 ~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~-~~~l~vD~a~~~~~~ 237 (452)
T 2dgk_A 159 WDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLA 237 (452)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTH
T ss_pred cCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCC-CCcEEEEcccHHHHH
Confidence 99999999874 7999999999899999999999999999999999999999 5 999999999997642
Q ss_pred ---cC--CCC---CcCcEEEEcccccccCCCCceEEEEEecChHHH-HHHHHHHHhcC----------CCC--CHHHHHH
Q psy12791 189 ---QK--SLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMG----------VVP--SPFDCWL 247 (393)
Q Consensus 189 ---~~--~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~-~~~~~~~~~~~----------~~~--~~~~~~~ 247 (393)
.. +.. .++|+++.|+||++. .+.++||++++++.+. +.+.....+.+ ... ....++.
T Consensus 238 ~~~~~~~~~~~~~~~~d~~~~~~hK~~~--~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~a 315 (452)
T 2dgk_A 238 PFVAPDIVWDFRLPRVKSISASGHKFGL--APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY 315 (452)
T ss_dssp HHHCTTCCCSTTSTTEEEEEEETTTTTC--CCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHH
T ss_pred HhhCccchhhcCCCCCcEEEECcccccC--CCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHH
Confidence 11 122 267899999999763 4456999999755433 33311111111 111 1122222
Q ss_pred HHhc--cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH---HHHHHHH
Q psy12791 248 VTRG--LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA---EETRIFL 322 (393)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 322 (393)
+++. .+.+..++++..++++.+.+.|++++++..+ .|+.+ ....+++.|.+++.. .....+.
T Consensus 316 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~------------~~~~~~v~f~~~~~~~~~~~~~~l~ 382 (452)
T 2dgk_A 316 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI-CTGRP------------DEGIPAVCFKLKDGEDPGYTLYDLS 382 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE-EECCT------------TTBSSEEEEEECTTCCCSCCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCCCC------------CCCeEEEEEEecCcccccCCHHHHH
Confidence 3222 2335556777778888999999888766533 22210 012467888885310 0123444
Q ss_pred HhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 323 ~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.|...++.+.. ...+.. + ...+++|+|++..+++++++.+.++|+++.
T Consensus 383 ~~L~~~Gi~v~~------~~~~~~-----~---------~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 383 ERLRLRGWQVPA------FTLGGE-----A---------TDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp HHHHHTTCBCCE------EECSTT-----C---------TTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeeee------eeCCcc-----c---------CCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 554433332221 000100 0 014689999999988888988888887653
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=199.24 Aligned_cols=325 Identities=10% Similarity=0.041 Sum_probs=200.2
Q ss_pred CCCCCCCCCCCccCCeeeeCCCCCCC-C-Cccc--cC-C-CCchHHHHH----HHHHHHhCCCcE-EEeccHHHHH-HHH
Q psy12791 23 QWRSQCVIPPIILSTTFKQNTPGQPP-Q-GFEY--SR-S-NNPTRRNLE----RCIASLEEAKHG-LCYSSGLGAV-TAV 90 (393)
Q Consensus 23 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~-~~~y--~~-~-~~~~~~~lr----~~la~~~~~~~~-i~~~~G~~al-~~~ 90 (393)
.+++.++++|+ ++.+.+++.+.+. . ...| ++ + +.+...+++ +++++++|.+.. +++++|++++ .++
T Consensus 25 ~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~ 102 (405)
T 2vi8_A 25 KIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102 (405)
T ss_dssp SEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred ceeeccCcccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHH
Confidence 44555566776 5566665554432 1 1112 11 1 234445554 699999998854 5579997777 777
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCc--EEEeeCCC------CHHHHHhhcCC-CCcEEEEecCCCCcccccC
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGL--EVDFVDLR------KIENLIKYIKP-NTKMVWIENPTNPLMTVFD 161 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~--~v~~~~~~------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~ 161 (393)
..++++||+|+++.|+|+++.... ..+...|. +++.++.+ |++++++.+.+ ++++|++ +|+|. |...+
T Consensus 103 ~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~ 179 (405)
T 2vi8_A 103 FTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIID 179 (405)
T ss_dssp HHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCC
T ss_pred HHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCC
Confidence 778899999999999998632100 00122333 77777642 78999998875 7898887 44444 56778
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccC---CCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQK---SLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~---~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 237 (393)
+++|.++|+++ |+++|+||+|+.+.... +.. ...|++++|+||+++|+.| ||++++ +++.+.++.....+.
T Consensus 180 l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~ 254 (405)
T 2vi8_A 180 FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGI 254 (405)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHc-CCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccc
Confidence 99999999999 99999999999643211 111 1578999999999965766 999997 888888766543222
Q ss_pred -CCCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE
Q psy12791 238 -VVPSPFDCWLVTRGL-----KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV 311 (393)
Q Consensus 238 -~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (393)
+..++.....+...+ +.+...+++..++.+.+.+.|++. ++. +..|. +.+.++++.+
T Consensus 255 ~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~~~~~~~~ 317 (405)
T 2vi8_A 255 QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFT-LVSGG---------------TDNHLLLVDL 317 (405)
T ss_dssp CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGS---------------CSSSEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCe-EecCC---------------CCceEEEEEc
Confidence 222343332222222 133456667777788888888765 332 21111 1256788888
Q ss_pred cCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC----CChHHHHHHHHHHH
Q psy12791 312 NGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV----EGYTDLIADLDQAL 387 (393)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~----~~~~~~i~~l~~al 387 (393)
+........+.+.|...++.+..|... ..... ...++++|+|++. ..++++++.+.++|
T Consensus 318 ~~~~~~~~~~~~~l~~~gi~v~~g~~~-~~~~~----------------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 380 (405)
T 2vi8_A 318 RPQQLTGKTAEKVLDEVGITVNKNTIP-YDPES----------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380 (405)
T ss_dssp GGGTCCHHHHHHHHHHHTEECEEECCT-TCSSC----------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCceeccCcCc-cccCC----------------CCCCCceEEeeeeeeecCCCHHHHHHHHHHH
Confidence 521012233444444445555544321 00000 0124689999997 34577788888877
Q ss_pred HHhh
Q psy12791 388 RKAC 391 (393)
Q Consensus 388 ~~~~ 391 (393)
+++.
T Consensus 381 ~~~~ 384 (405)
T 2vi8_A 381 GLVL 384 (405)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=204.40 Aligned_cols=316 Identities=13% Similarity=0.055 Sum_probs=191.1
Q ss_pred CCCC-CCCC--CCCcc-CCeeeeCCCCCCCCC--ccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHh
Q psy12791 23 QWRS-QCVI--PPIIL-STTFKQNTPGQPPQG--FEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHL 93 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~--~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~ 93 (393)
.++| +++. ++++. ++.+.+++.+.+... ..++.|+++...+++++++++++.+ +.+++++| ++++ .++..+
T Consensus 44 ~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~ 123 (429)
T 1s0a_A 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMA 123 (429)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 4567 5555 56764 455555443322111 1123455677889999999999754 55666555 5567 555433
Q ss_pred c---C----CCCeEEEcCCCccchHHHHHHhcc------------cCCcEEEeeCC---------CCHHHHHhhcC---C
Q psy12791 94 L---S----AGDHIISGDDVYGGTYRYFAQVAP------------KIGLEVDFVDL---------RKIENLIKYIK---P 142 (393)
Q Consensus 94 ~---~----~gd~vl~~~~~y~~~~~~~~~~~~------------~~g~~v~~~~~---------~d~~~l~~~l~---~ 142 (393)
. + +||+|++.+|+|++.......... ..++..+.++. .|++++++.++ +
T Consensus 124 ~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 203 (429)
T 1s0a_A 124 LQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203 (429)
T ss_dssp HHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTT
T ss_pred HHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCC
Confidence 2 2 689999999999864322211111 11345555542 26888888876 4
Q ss_pred CCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cC--C---CCCcCcEEEEcccccccCCC
Q psy12791 143 NTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QK--S---LPWGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 143 ~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~--~---~~~~~di~~~S~sK~~~G~~ 211 (393)
++++|+++.+ |||||.+++ +++|.++|+++ |+++|+||+|.++.. .. . .....|++ |+||.++ +
T Consensus 204 ~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~--~ 278 (429)
T 1s0a_A 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALT--G 278 (429)
T ss_dssp TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--T
T ss_pred CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCcccchHHHhhhcCCCCCEE--Eeccccc--C
Confidence 5666666555 799998887 99999999999 999999999985321 11 1 12235655 6889994 3
Q ss_pred C-ceEEEEEecChHHHHHHHHHH-----HhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhhC---CCcc
Q psy12791 212 D-VVMGATVTNDDSLQARLKFLQ-----NSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLESH---PCVK 280 (393)
Q Consensus 212 G-~r~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~---~~~~ 280 (393)
| +|+||++++ +++++.+.... .......++..+..+...++.+ ....++..++.+.+.+.|+.+ +.+.
T Consensus 279 G~~~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 357 (429)
T 1s0a_A 279 GTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVA 357 (429)
T ss_dssp SSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEE
T ss_pred CCccceEEEeC-HHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 8 899999997 78877765320 0011223455554444443321 123455566667777777653 2221
Q ss_pred eEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhc
Q psy12791 281 GVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360 (393)
Q Consensus 281 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~ 360 (393)
.+ .+.+.++++.+++. .....+.+.+...++.+..
T Consensus 358 ~~------------------~~~g~~~~~~~~~~-~~~~~l~~~l~~~Gi~v~~-------------------------- 392 (429)
T 1s0a_A 358 DV------------------RVLGAIGVVETTHP-VNMAALQKFFVEQGVWIRP-------------------------- 392 (429)
T ss_dssp EE------------------EEETTEEEEEESSC-BCHHHHHHHHHHTTEECCC--------------------------
T ss_pred EE------------------EEeeEEEEEEECCc-ccHHHHHHHHHHCCCEEec--------------------------
Confidence 11 11246788888531 1223344444333443321
Q ss_pred CCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 361 GITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 361 g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+++|+|++...++++++.+.++|+++.
T Consensus 393 --~~~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 393 --FGKLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp --BTTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred --cCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 03689999999999999999999988754
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=197.21 Aligned_cols=286 Identities=12% Similarity=0.080 Sum_probs=172.2
Q ss_pred HHHHHHHHhCCCcE-EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCC--cEEEeeCCC------CH
Q psy12791 64 LERCIASLEEAKHG-LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG--LEVDFVDLR------KI 133 (393)
Q Consensus 64 lr~~la~~~~~~~~-i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g--~~v~~~~~~------d~ 133 (393)
.++.+++++|.+.. +++++|++++ .++..++++||+|++++|+|++... +.......| .+++.++.+ |+
T Consensus 83 a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 161 (425)
T 3ecd_A 83 AIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLT-HGAKPALSGKWFNALQYGVSRDTMLIDY 161 (425)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCTTTSSCCH
T ss_pred HHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEccccccccee-cchhhhhcccceeeeecCCCcccCccCH
Confidence 44778899998865 5588999887 7777789999999999999986221 111112233 356666654 89
Q ss_pred HHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CC--CcCcEEEEccccccc
Q psy12791 134 ENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LP--WGVDIVLYSLTKYMN 208 (393)
Q Consensus 134 ~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~--~~~di~~~S~sK~~~ 208 (393)
+++++.+. +++++|++++|+|| ...++++|.++|+++ |+++|+||+|..+..... .. ...|+++.|+||+++
T Consensus 162 ~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~ 238 (425)
T 3ecd_A 162 DQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSV-GAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLR 238 (425)
T ss_dssp HHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGC
T ss_pred HHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHc-CCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccC
Confidence 99999886 57999999999995 577899999999999 999999999765433111 11 136899999999984
Q ss_pred CCCCceEEEEEecChHHHHHHHHHHHhc-CCCCCH-HHHHH--HH-hcc-CCHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 209 GHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSP-FDCWL--VT-RGL-KTLPCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
| .|+||++++++.+.+.+....... ...... ..+.. +. ... +.+....++..++.+.+.+.|.+. ++. +
T Consensus 239 g---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~ 313 (425)
T 3ecd_A 239 G---PRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVD-L 313 (425)
T ss_dssp C---CSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E
T ss_pred C---CCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe-e
Confidence 4 478999998677777776543321 112222 22211 11 112 234456667777778888888763 222 1
Q ss_pred eCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
..+ ...+.++++.+.+.....+.+.+.+...++.+..+........ ..
T Consensus 314 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~-----------------~~ 361 (425)
T 3ecd_A 314 VTG---------------GTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEK-----------------PT 361 (425)
T ss_dssp GGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSC-----------------TT
T ss_pred ccC---------------CCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCC-----------------CC
Confidence 111 1124678888742111223333333333444442221000000 01
Q ss_pred CCCeEEEEecCCCh----HHHHHHHHHHHHHh
Q psy12791 363 TDNLVRLSVGVEGY----TDLIADLDQALRKA 390 (393)
Q Consensus 363 ~~~~iRls~~~~~~----~~~i~~l~~al~~~ 390 (393)
.++.+|++++..++ +++++.+.++|+++
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 24689999665544 78888887777654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=203.18 Aligned_cols=286 Identities=15% Similarity=0.085 Sum_probs=191.6
Q ss_pred HHHHHHHHHhCCC-------cEEEeccHHHHH-HHHHHhcCC--------CC-----eEEEcCCCccchHHHHHHhcccC
Q psy12791 63 NLERCIASLEEAK-------HGLCYSSGLGAV-TAVTHLLSA--------GD-----HIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 63 ~lr~~la~~~~~~-------~~i~~~~G~~al-~~~~~~~~~--------gd-----~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
++++.+++++|.+ ..+++++|++++ .++.++..+ |+ +|+++.++|.+ +...++..
T Consensus 99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s----~~~~~~~~ 174 (502)
T 3hbx_A 99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC----WEKFARYF 174 (502)
T ss_dssp HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH----HHHHHHHT
T ss_pred HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH----HHHHHHHc
Confidence 5666788899987 233466666776 555555443 76 89999999984 67778889
Q ss_pred CcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCC-----CcEEEEeCccCcccc--
Q psy12791 122 GLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP-----DILLVLDNTFLTAYY-- 188 (393)
Q Consensus 122 g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----~~~livDea~~~~~~-- 188 (393)
|++++.++.+ |++++++++.+++++|++++|+||||.+.|+++|.++|++++ |+++++|++|+.+..
T Consensus 175 G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~ 254 (502)
T 3hbx_A 175 EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPF 254 (502)
T ss_dssp TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHH
T ss_pred CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhh
Confidence 9999999864 789999999999999999999999999999999999999862 899999999986531
Q ss_pred -cC--CCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHH-HHHHHHHhcCC----------CC--CHHHHHHHH
Q psy12791 189 -QK--SLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA-RLKFLQNSMGV----------VP--SPFDCWLVT 249 (393)
Q Consensus 189 -~~--~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~-~~~~~~~~~~~----------~~--~~~~~~~~~ 249 (393)
.. +.. .++|++..|++|++.++.| +|++++++++.+. .+.....+.+. .. ....++.++
T Consensus 255 ~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al 332 (502)
T 3hbx_A 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL 332 (502)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHH
T ss_pred hCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHH
Confidence 11 111 3689999999999866666 8988887555432 11110011111 11 122233333
Q ss_pred h--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-HHHHHHHHhcC
Q psy12791 250 R--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-EETRIFLESLL 326 (393)
Q Consensus 250 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 326 (393)
+ ..+.+..++++..++++.+.+.|+.++++..+ .+. ...+++.|.++++. .....+.+.|.
T Consensus 333 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~---------------~~~~~v~f~~~~~~~~~~~~l~~~L~ 396 (502)
T 3hbx_A 333 IRLGHEGYRNVMENCRENMIVLREGLEKTERFNIV-SKD---------------EGVPLVAFSLKDSSCHTEFEISDMLR 396 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEC-SCS---------------SSSSEEEEEESSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-eCC---------------CCceEEEEEecCCCcCCHHHHHHHHH
Confidence 3 22445667788888899999999988765532 220 01468888885421 12234555555
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++.++. ...|.. . ....++|++++...++++++.+.++|+++
T Consensus 397 ~~Gi~v~~------~~~p~~-----~---------~~~~~lRisv~~~~t~edid~li~~L~~~ 440 (502)
T 3hbx_A 397 RYGWIVPA------YTMPPN-----A---------QHITVLRVVIREDFSRTLAERLVIDIEKV 440 (502)
T ss_dssp TTTCBCCE------EECCTT-----C---------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred hCCcEEee------ccCCcc-----c---------CCceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44443321 111100 0 01468999999998888888888877754
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=203.89 Aligned_cols=321 Identities=11% Similarity=-0.004 Sum_probs=184.9
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCCCccc--cCCCCchHHHHHHHHHHHhCCC-cEEEecc-HHHHH-HHHHH
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQGFEY--SRSNNPTRRNLERCIASLEEAK-HGLCYSS-GLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~~~y--~~~~~~~~~~lr~~la~~~~~~-~~i~~~~-G~~al-~~~~~ 92 (393)
..++| +++ .+|++. ++.+.+++.+.+.....| ..++++...++++.++++++.+ +.+++++ |++++ .++..
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~ 108 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKL 108 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 45678 665 678876 455555443322111112 2456678899999999999764 5566555 55567 65555
Q ss_pred hc--------CCCCeEEEcCCCccchHHHHHHhcccCCc---------------EEEeeCCC--------CHHHHHhhcC
Q psy12791 93 LL--------SAGDHIISGDDVYGGTYRYFAQVAPKIGL---------------EVDFVDLR--------KIENLIKYIK 141 (393)
Q Consensus 93 ~~--------~~gd~vl~~~~~y~~~~~~~~~~~~~~g~---------------~v~~~~~~--------d~~~l~~~l~ 141 (393)
+. ..+|.|++.+|+|++... .+...+. .+..++.+ |++++++.++
T Consensus 109 ~~~~~~~~g~~~~~~vi~~~~~yhg~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~ 184 (430)
T 3i4j_A 109 ARQYHVERGEPGRFKVITRVPSYHGASL----GSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLE 184 (430)
T ss_dssp HHHHHHHTTCTTCCEEEEETTC-----------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEeCCcCCCCc----ccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHH
Confidence 44 347899999999986321 1111111 33334443 3477877775
Q ss_pred ----CCCcEEEEecCCC-CcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CC-----C-CCcCcEEEEcccc
Q psy12791 142 ----PNTKMVWIENPTN-PLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KS-----L-PWGVDIVLYSLTK 205 (393)
Q Consensus 142 ----~~~~~v~l~~p~n-ptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~-----~-~~~~di~~~S~sK 205 (393)
+++++|+++.+|| ++|.+.+ +++|.++|+++ |+++|+||+|.++... .. . ....|++ ++||
T Consensus 185 ~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK 261 (430)
T 3i4j_A 185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGK 261 (430)
T ss_dssp HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECG
T ss_pred hcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccchhhhhhhcCCCCcEE--EEcc
Confidence 3456777777777 9998887 99999999999 9999999999864221 11 1 2224554 6889
Q ss_pred cccCCCC-ceEEEEEecChHHHHHHHHH----HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh----
Q psy12791 206 YMNGHSD-VVMGATVTNDDSLQARLKFL----QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE---- 274 (393)
Q Consensus 206 ~~~G~~G-~r~G~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~---- 274 (393)
.++ +| +|+||++++ +++++.+... ........++..+..+...++.+. ...++..++.+.+.+.|+
T Consensus 262 ~l~--~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (430)
T 3i4j_A 262 GLA--AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQA 338 (430)
T ss_dssp GGT--TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 994 39 999999997 8888877653 111223445666555554443221 123444444444444443
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--------HHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG--------AEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
.++.+..+ ++.+.++++.+.+. .+....+.+.+...++.+..+....
T Consensus 339 ~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~------- 393 (430)
T 3i4j_A 339 RFPQMMQV------------------RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE------- 393 (430)
T ss_dssp HCTTEEEE------------------EEETTEEEEEEC------------CHHHHHHHHHHTTEECC-------------
T ss_pred hCCCeEEE------------------EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc-------
Confidence 44444322 12356788887421 1112445555544455544431100
Q ss_pred ccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 347 MTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 347 ~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+..++++|+++++..++++++.+.++|+++
T Consensus 394 -------------~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 424 (430)
T 3i4j_A 394 -------------PNGRGDHLLLGPPLSITAAEVDGLLALLAGA 424 (430)
T ss_dssp ------------------CEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0122579999999888888777777777654
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=201.13 Aligned_cols=286 Identities=11% Similarity=0.051 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccHHH-H-H-HHHHHhcC--CCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC---C
Q psy12791 60 TRRNLERCIASLEEAKHGLCYSSGLG-A-V-TAVTHLLS--AGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL---R 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~~~i~~~~G~~-a-l-~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~---~ 131 (393)
..+++++.+|+++|.+..+++++|++ + + .++..+.. +++.|++++++|.+ +...++..|++++.++. +
T Consensus 134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s----~~~~~~~~G~~~~~v~~~~~~ 209 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS----PIKAVSFVGMNMRLVETVLDG 209 (456)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH----HHHHHHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH----HHHHHHHcCCCceEEEEeccC
Confidence 34668999999999874366777766 3 3 34444333 67889999999985 45567778999998876 2
Q ss_pred -----CHHHHHhhc-C----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCc
Q psy12791 132 -----KIENLIKYI-K----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWG 195 (393)
Q Consensus 132 -----d~~~l~~~l-~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~ 195 (393)
|++++++++ + .++.+|++++||||||.+.|+++|.++|+++ |+++++|++|+.... ..+. ..+
T Consensus 210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~-g~~v~vD~A~~~~~~g~~~~~~~~~~~~ 288 (456)
T 2z67_A 210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAFKYR 288 (456)
T ss_dssp TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCcEEEECcchHHHHHhhHHHHHhhCCC
Confidence 789999988 4 3677888899999999999999999999999 999999999886432 1111 116
Q ss_pred CcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCC-C-HHHHHHHHhcc--CCHHHHHHHHHHHHHHHHH
Q psy12791 196 VDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVP-S-PFDCWLVTRGL--KTLPCRLKEHERGSIEVAK 271 (393)
Q Consensus 196 ~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 271 (393)
.|+++.|+||++.|+. ++||++++++++.+.+.. ...+... . ....+.++..+ +.+....++..++++.+.+
T Consensus 289 ~D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~--~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 364 (456)
T 2z67_A 289 VDAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISL--SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDE 364 (456)
T ss_dssp CSEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHT--TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999875554 499999965777776632 1222211 1 22222222222 2344456666777788888
Q ss_pred HHhhCC---CcceEeCCCCCCCcchHHHhhhcCCCcceEEEEE--cCC-HHHHHHHHHhcCccccccc--cCCccccccC
Q psy12791 272 FLESHP---CVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYV--NGG-AEETRIFLESLLIFRCAES--LGGIESLADL 343 (393)
Q Consensus 272 ~l~~~~---~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~--~g~~~s~~~~ 343 (393)
.|++.+ ++. + .+. . ++++|.+ ++. .+-.+.+.+. ......+. .| .+.
T Consensus 365 ~L~~~~~~~g~~-v-~~~----------------~-~~v~~~~~~~~~~~~l~~~L~~~-gi~~~rv~~~~g-~f~---- 419 (456)
T 2z67_A 365 LLNDLSKKTGGK-F-LDV----------------E-SPIASCISVNSDPVEIAAKLYNL-RVTGPRGIKKTD-HFG---- 419 (456)
T ss_dssp HHHHHHHHSSCC-B-CCC----------------C-CSSEEEEECSSCHHHHHHHHHHT-TEESCEEECTTC-HHH----
T ss_pred HHHhcccccCCE-e-cCC----------------C-CeEEEEEecccHHHHHHHHHHHc-CCCcceEEeecC-ccc----
Confidence 887653 321 1 111 1 3455555 322 1222222221 11001110 00 000
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+.. -...+++|+|++..+++++++.+.++|+++.
T Consensus 420 ---G~~~~---------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 420 ---NCYLG---------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ---HTCSS---------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ---ccccc---------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 00000 0124799999999999999999999998754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-23 Score=195.10 Aligned_cols=285 Identities=14% Similarity=0.076 Sum_probs=175.9
Q ss_pred HHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHH-hcccCCcEEEeeCCC-----CHH
Q psy12791 63 NLERCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQ-VAPKIGLEVDFVDLR-----KIE 134 (393)
Q Consensus 63 ~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~-~~~~~g~~v~~~~~~-----d~~ 134 (393)
.+++.+++++|.+ +.+++++|++++ .++..++++||+|++++|+|++....... .....+..++.++.+ |++
T Consensus 75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 154 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE 154 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence 3455889999988 459999998778 77788899999999999999753221111 112244556666652 789
Q ss_pred HHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---CCC-CcCcEEEEcccccccC
Q psy12791 135 NLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---SLP-WGVDIVLYSLTKYMNG 209 (393)
Q Consensus 135 ~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---~~~-~~~di~~~S~sK~~~G 209 (393)
++++.+. +++++|++++|+| |.+.|+++|.++|+++ |+++|+|++|..+.... +.. ...|+++.|+||+++
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~- 230 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLR- 230 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTC-
T ss_pred HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHc-CCEEEEECccchhhhhcccCCCccccceEEEeeCccccC-
Confidence 9999987 5899999888886 8899999999999999 99999999976543211 111 146899999999884
Q ss_pred CCCceEEEEEecChHHHHHHHHHHHhcC-CCCCHHHHHH---HHhc-c-CCHHHHHHHHHHHHHHHHHHHhhCCCcceEe
Q psy12791 210 HSDVVMGATVTNDDSLQARLKFLQNSMG-VVPSPFDCWL---VTRG-L-KTLPCRLKEHERGSIEVAKFLESHPCVKGVL 283 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~ 283 (393)
|.|+||++++++++.+.++....... .......... +... . +.+...+++..++++.+.+.|++ .++. +.
T Consensus 231 --g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~ 306 (417)
T 3n0l_A 231 --GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFK-LV 306 (417)
T ss_dssp --SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE-EG
T ss_pred --CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCce-ec
Confidence 34689999986788888766544221 2222322211 1111 1 23455666777777888888876 3332 11
Q ss_pred CCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhc
Q psy12791 284 HPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360 (393)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~ 360 (393)
+. ...+.++++.+.+ +.+....++.. .++.+..+........+
T Consensus 307 -~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi~v~~~~~~~~~~~~---------------- 352 (417)
T 3n0l_A 307 -SD--------------GTDNHLVLMSFLDREFSGKDADLALGN---AGITANKNTVPGEIRSP---------------- 352 (417)
T ss_dssp -GG--------------SCSSSEEEEECTTSSSCHHHHHHHHHH---TTEECEECCCTTCCSCT----------------
T ss_pred -cC--------------CCCceEEEEEcccCCCCHHHHHHHHHH---cCeEEeccccCCCCccc----------------
Confidence 10 1124577887742 34444444443 34444332211000000
Q ss_pred CCCCCeEEEEecCCC----hHHHHHHHHHHHHHh
Q psy12791 361 GITDNLVRLSVGVEG----YTDLIADLDQALRKA 390 (393)
Q Consensus 361 g~~~~~iRls~~~~~----~~~~i~~l~~al~~~ 390 (393)
.....+|+++...+ ++++++.+.++|+++
T Consensus 353 -~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~ 385 (417)
T 3n0l_A 353 -FITSGLRLGTPALTARGFKEKEMEIVSNYIADI 385 (417)
T ss_dssp -TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 12467999986433 366677777776654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.60 Aligned_cols=284 Identities=15% Similarity=0.095 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhCCCcEEEe-ccHHHHH-HHHHHh----cCCCC-----eEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 61 RRNLERCIASLEEAKHGLCY-SSGLGAV-TAVTHL----LSAGD-----HIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 61 ~~~lr~~la~~~~~~~~i~~-~~G~~al-~~~~~~----~~~gd-----~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
..++++.+++++|.+..+++ ++|++++ .++..+ .++|| +|+++.++|++ +...++..|++++.++
T Consensus 109 ~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~----~~~~~~~~G~~vv~v~ 184 (474)
T 1wyu_B 109 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS----NPATASMAGYQVREIP 184 (474)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH----HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChh----hHHHHHHCCCEEEEec
Confidence 56788888889998866655 5556666 434332 35787 99999999985 4556778899999998
Q ss_pred CC-----CHHHHHhhcCCCCcEEEEecCCCCcccc-cCHHHHHHHHHhCCCcEEEEeCccCccccc--CCCCCcCcEEEE
Q psy12791 130 LR-----KIENLIKYIKPNTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVLDNTFLTAYYQ--KSLPWGVDIVLY 201 (393)
Q Consensus 130 ~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~livDea~~~~~~~--~~~~~~~di~~~ 201 (393)
.+ |++++++++++++++|++++| ||||.+ .++++|.++|+++ |+++|+|++|+.+... .+...+.|+++.
T Consensus 185 ~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~-g~~li~Dea~~~~~~g~~~~~~~g~di~~~ 262 (474)
T 1wyu_B 185 SGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEA-GVQLYYDGANLNAIMGWARPGDMGFDVVHL 262 (474)
T ss_dssp BCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHH-TCEEEEEGGGGGGTTTTCCHHHHTCSEEEC
T ss_pred CCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHc-CCEEEEeCchhhhhccCCCcccCCCcEEEE
Confidence 85 899999999988999999998 589998 5899999999999 9999999999765531 111246899999
Q ss_pred cccccccCC---CCceEEEEEecChHHHHHHHH-HH------------------HhcCCCCCHHHHHHHHhcc-----CC
Q psy12791 202 SLTKYMNGH---SDVVMGATVTNDDSLQARLKF-LQ------------------NSMGVVPSPFDCWLVTRGL-----KT 254 (393)
Q Consensus 202 S~sK~~~G~---~G~r~G~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~-----~~ 254 (393)
|+||+++++ .|.|+||++++ +++++.+.. .. .......+...+..+...+ +.
T Consensus 263 s~~K~~~~p~g~gG~~~G~~~~~-~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~ 341 (474)
T 1wyu_B 263 NLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG 341 (474)
T ss_dssp CTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eCccccccCCCCCCCCeEEEEEc-HHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH
Confidence 999999633 24689999998 566554431 00 0000112333333222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccccc
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESL 334 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (393)
+....++..++++.+.+.|++. ++. +..+. .....+++.+. .......+.+.|...++.+ .
T Consensus 342 l~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~---------------~~~~~~~~~~~-~~~~~~~l~~~L~~~Gi~~-~ 402 (474)
T 1wyu_B 342 LKKAAALAVLNARYLKELLKEK-GYR-VPYDG---------------PSMHEFVAQPP-EGFRALDLAKGLLELGFHP-P 402 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCB-CSSCS---------------SCCSCEEEBCS-TTCCHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CcE-ecCCC---------------CcceEEEEEcC-CCCCHHHHHHHHHHCCccc-c
Confidence 4444666677788888888765 332 11111 00011333332 1112233444333223321 1
Q ss_pred CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 335 GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 335 g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+..+ + ...++++|++++..+++++++.+.++|+++.
T Consensus 403 ~~~~-----~----------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 403 TVYF-----P----------------LIVKEALMVEPTETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp EESC-----S----------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred cccc-----c----------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 1000 0 0115789999999888999999999988764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=198.86 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=120.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC--C
Q psy12791 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--R 131 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--~ 131 (393)
++.+...++++.+|+ +|.++++++++|+++ + .++.+++++||+|++++++|.+. ...+...|+++++++. +
T Consensus 54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~----~~~~~~~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSV----LHALDISQQEGHFIETHQS 128 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHH----HHHHHHHTCCEEECEEEEC
T ss_pred CcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHH----HHHHHHcCCeEEEEeCeec
Confidence 456788999999999 998888899999765 7 77777889999999999999864 3445567888888776 3
Q ss_pred ---------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc-ccC-CC---CCcCc
Q psy12791 132 ---------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY-YQK-SL---PWGVD 197 (393)
Q Consensus 132 ---------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~-~~~-~~---~~~~d 197 (393)
|++++ +.+++++|++++| |++|.+.|+++|.++|+++ |+++++||+|+... +.. +. ..+.|
T Consensus 129 ~~~~~~~~~d~~~l---~~~~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~-~~~livDea~~~~~~f~~~~~~~~~~g~D 203 (446)
T 2x3l_A 129 PLTNHYNKVNLSRL---NNDGHKLVVLTYP-NYYGETFNVEEVIKSLHQL-NIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203 (446)
T ss_dssp TTTSSEEEEEC----------CCEEEEESS-CTTSCCCCHHHHHHHHHHT-TCCEEEECTTCTTTTSTTSCCCGGGGTCS
T ss_pred cccCcCCCCCHHHH---cCCCceEEEEECC-CCCeEecCHHHHHHHHHhc-CCeEEEcchhhhhhccCCCCCChHHcCCC
Confidence 34555 4567999999995 5599999999999999999 99999999998622 111 22 24689
Q ss_pred EEEEcccccccCCCCceEEEEEecC
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
+++.|+||+++|+.| +||+++++
T Consensus 204 i~~~S~~K~l~~~~g--~g~l~~~~ 226 (446)
T 2x3l_A 204 YVVQSFHKTLPALTM--GSVLYIHK 226 (446)
T ss_dssp EEEECHHHHSSSCTT--CEEEEEET
T ss_pred EEEECCccccccccc--cEEEEEcC
Confidence 999999997766766 89999974
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=192.64 Aligned_cols=284 Identities=12% Similarity=0.076 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCC--cEEEeeCC-----CC
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG--LEVDFVDL-----RK 132 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g--~~v~~~~~-----~d 132 (393)
+.+++.+++++|.+ +.+++++|++++ .++.+++++||+|+++.|+|+++.... ......| ...+.++. .|
T Consensus 79 ~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~d 157 (420)
T 3gbx_A 79 QLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-SPVNFSGKLYNIVPYGIDESGKID 157 (420)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-------------CHHHHSEEEEEEECTTCSCC
T ss_pred HHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccc-hhhhhcccceeEEeccCCccCCcC
Confidence 34567889999987 457789998887 777888999999999999997632111 1112222 34444432 28
Q ss_pred HHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----CCCCCcCcEEEEccccc
Q psy12791 133 IENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-----KSLPWGVDIVLYSLTKY 206 (393)
Q Consensus 133 ~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-----~~~~~~~di~~~S~sK~ 206 (393)
++++++++.+ ++++|++++|+||+ ..++++|.++|+++ |+++|+||+|..+... ... ...|++++|+||+
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~--~~~l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~-~~~di~~~s~sK~ 233 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSG--VVDWAKMREIADSI-GAYLFVDMAHVAGLIAAGVYPNPV-PHAHVVTTTTHKT 233 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCS--CCCHHHHHHHHHHT-TCEEEEECTTTHHHHHTTSSCCST-TTSSEEEEESSGG
T ss_pred HHHHHHHHHhcCCeEEEEecCccCC--ccCHHHHHHHHHHc-CCEEEEECCcchhceecccCCccc-ccCCEEEeecccC
Confidence 9999999876 59999999999874 78899999999999 9999999998764431 122 2478999999999
Q ss_pred ccCCCCceEEEEEecC--hHHHHHHHHHHHhc--CCCCCHHHHHH--HH-hcc-CCHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 207 MNGHSDVVMGATVTND--DSLQARLKFLQNSM--GVVPSPFDCWL--VT-RGL-KTLPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
++|+ ++||+++++ +++.+.++...... +....+..+.. +. ... +.+...+++..++.+.+.+.|++. +
T Consensus 234 ~~g~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 309 (420)
T 3gbx_A 234 LAGP---RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-G 309 (420)
T ss_dssp GCSC---SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCC---CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 9544 469999984 27777765443322 22222222121 21 222 234556777778888888888762 2
Q ss_pred cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChh
Q psy12791 279 VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKE 355 (393)
Q Consensus 279 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~ 355 (393)
+. +..+ ...+.++++.+.+ +.+.....+. ..++.+..++.......+
T Consensus 310 ~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gi~v~~~~~~~~~~~~----------- 359 (420)
T 3gbx_A 310 YK-VVSG---------------GTENHLFLLDLVDKNLTGKEADAALG---RANITVNKNSVPNDPKSP----------- 359 (420)
T ss_dssp CE-EGGG---------------SCSSSEEEEECGGGTCCHHHHHHHHH---HTTEECEEECCTTCSSCT-----------
T ss_pred Ce-eccC---------------CCCCeEEEEEcCCCCCCHHHHHHHHH---HCCcEeccccCCCCcccc-----------
Confidence 22 1111 1124678887742 2333333333 334443331110000000
Q ss_pred hHhhcCCCCCeEEEEecCCCh----HHHHHHHHHHHHHh
Q psy12791 356 TRDALGITDNLVRLSVGVEGY----TDLIADLDQALRKA 390 (393)
Q Consensus 356 ~~~~~g~~~~~iRls~~~~~~----~~~i~~l~~al~~~ 390 (393)
..+..+|++++..++ +++++.+.++|+++
T Consensus 360 ------~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 360 ------FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp ------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------CCCcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 113559999976543 67777777777654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=194.81 Aligned_cols=295 Identities=15% Similarity=0.049 Sum_probs=183.2
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcC----CCCe---EEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLS----AGDH---IISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~----~gd~---vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
.+...+||+++|++++.++.+++++|++++ .++..++. +||+ |+++.+.|.. +...+...|.+++.++
T Consensus 75 ~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~----~~~~~~~~g~~~~~~~ 150 (467)
T 1ax4_A 75 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT----TAAHVELNGCKAINIV 150 (467)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHH----HHHHHHHTTCEEEECB
T ss_pred CccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccch----hhHHHhccCCceeccc
Confidence 567899999999999987777777788887 77777777 9998 9888555543 3445566788877543
Q ss_pred C---------------CCHHHHHhhcCC----CCcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEEEeCccCc-
Q psy12791 130 L---------------RKIENLIKYIKP----NTKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLVLDNTFLT- 185 (393)
Q Consensus 130 ~---------------~d~~~l~~~l~~----~~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~livDea~~~- 185 (393)
. .|++++++++++ ++++|++++|+||| |.+++ +++|.++|++| |++||+|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~-gi~li~De~~~~~ 229 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCE 229 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-CCEEEEEchhhhh
Confidence 1 178999988863 68999999999999 88876 67899999999 999999998654
Q ss_pred cc--------ccCCCC---------CcCcEEEEcccccccCCCCceEEEEEecCh-HHHHHHHHHHHhcCC-----CCCH
Q psy12791 186 AY--------YQKSLP---------WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-SLQARLKFLQNSMGV-----VPSP 242 (393)
Q Consensus 186 ~~--------~~~~~~---------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~-----~~~~ 242 (393)
+. ...+.. ...|+++.|+||++ |++ .+|+++++++ ++.+.+......++. ..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~-g~~--~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP-LLN--IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT-CCS--SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccC-CCC--cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence 11 111111 13678889999999 565 1477777656 888877654432211 1121
Q ss_pred HHHH-H--HHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE-------Ec
Q psy12791 243 FDCW-L--VTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY-------VN 312 (393)
Q Consensus 243 ~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~ 312 (393)
.... + .+..... ...+++..++.+.+.+.|++ +++. +..|. .+.++++. +.
T Consensus 307 ~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~-~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~ 367 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLRE-AGIP-IQYPT----------------GGHAVFVDCKKLVPQIP 367 (467)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH-TTCC-BCSSC----------------CSSEEEEESTTTCTTSC
T ss_pred hHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHh-CCCC-cccCC----------------CceEEEEehhhhccccc
Confidence 1111 1 1222222 12344445666778888876 3332 11121 13456766 32
Q ss_pred CCHHHHHHHHHhc-Ccccccccc-CCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHHHHHHHH
Q psy12791 313 GGAEETRIFLESL-LIFRCAESL-GGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADLDQALRK 389 (393)
Q Consensus 313 ~~~~~~~~~~~~l-~~~~~~~~~-g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l~~al~~ 389 (393)
+.......+.+.| ...++.+.. |..+. ...+.. .. ......+++|||++.. .++++++.+.++|++
T Consensus 368 ~~~~~~~~l~~~L~~~~gv~v~~~g~~~~-~~~~~~----g~------~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 436 (467)
T 1ax4_A 368 GDQFPAQAVINALYLESGVRAVEIGSFLL-GRDPAT----GE------QKHADMEFMRLTIARRVYTNDHMDYIADALIG 436 (467)
T ss_dssp GGGCHHHHHHHHHHHHHCEECEEESHHHH-CBCTTT----CS------BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCceeeecCcccc-cccccc----cc------ccccccceEEEecccccCCHHHHHHHHHHHHH
Confidence 1111345566666 555666655 32210 000000 00 0001147999999954 778888888888775
Q ss_pred h
Q psy12791 390 A 390 (393)
Q Consensus 390 ~ 390 (393)
+
T Consensus 437 ~ 437 (467)
T 1ax4_A 437 L 437 (467)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=199.34 Aligned_cols=320 Identities=14% Similarity=0.093 Sum_probs=192.3
Q ss_pred CCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCc--cccCCCCchHHHHHHHHHHHhCCC-cEEEe-ccHHHHH-HHHHHh
Q psy12791 23 QWRS-QCVI--PPIIL-STTFKQNTPGQPPQGF--EYSRSNNPTRRNLERCIASLEEAK-HGLCY-SSGLGAV-TAVTHL 93 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~--~y~~~~~~~~~~lr~~la~~~~~~-~~i~~-~~G~~al-~~~~~~ 93 (393)
.++| +++. ++++. ++.+.+++.+.+.... .+..++.+...++++.++++++.. +.+++ ++|++++ .++..+
T Consensus 51 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~ 130 (449)
T 3a8u_X 51 KVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMV 130 (449)
T ss_dssp EEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3556 4443 56655 3555554433322221 122456677889999999998754 45555 5556667 555544
Q ss_pred cC--------CCCeEEEcCCCccchHHHHHHhcc-----------cCCcEEEeeCC--------CC--------HHHHHh
Q psy12791 94 LS--------AGDHIISGDDVYGGTYRYFAQVAP-----------KIGLEVDFVDL--------RK--------IENLIK 138 (393)
Q Consensus 94 ~~--------~gd~vl~~~~~y~~~~~~~~~~~~-----------~~g~~v~~~~~--------~d--------~~~l~~ 138 (393)
.. ++|+|++.+|+|++.......... ..|+..+.++. .| ++++++
T Consensus 131 ~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~ 210 (449)
T 3a8u_X 131 RAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLK 210 (449)
T ss_dssp HHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHH
Confidence 42 679999999999874322211111 12344444442 04 888888
Q ss_pred hcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-ccCCC-----CCcCcEEEEccc
Q psy12791 139 YIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-YQKSL-----PWGVDIVLYSLT 204 (393)
Q Consensus 139 ~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~~~~~-----~~~~di~~~S~s 204 (393)
.+. +++++|+++..+|+||.+++ +++|.++|+++ |++||+||+|..+. ..... ....|++ |+|
T Consensus 211 ~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~s 287 (449)
T 3a8u_X 211 LIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH-NILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIA 287 (449)
T ss_dssp HHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EEC
T ss_pred HHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh-CCEEEEeccccCccccCcchhhhhcCCCCCEE--EEc
Confidence 886 35667766665678999888 99999999999 99999999996432 11111 1235665 888
Q ss_pred ccccCCCC-ceEEEEEecChHHHHHHHHHH---------HhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSD-VVMGATVTNDDSLQARLKFLQ---------NSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKF 272 (393)
Q Consensus 205 K~~~G~~G-~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 272 (393)
|+++ . | +|+||++++ +++++.+.... .......++..+..+...++.+. ...++..++...+.+.
T Consensus 288 K~l~-~-G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~ 364 (449)
T 3a8u_X 288 KQVT-N-GAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKA 364 (449)
T ss_dssp GGGG-T-TSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cccc-C-CCCceEEEEEC-HHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9994 3 7 899999997 78887775421 01112335655555554444322 2445556666777777
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH--H--HHHHHHHhcCccccccccCCccccccCccccc
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA--E--ETRIFLESLLIFRCAESLGGIESLADLPAEMT 348 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~ 348 (393)
|++++....+. ..++.+.++++.+.+.. . ....+.+.+...++.+..+
T Consensus 365 L~~l~~~~~~~---------------~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------- 416 (449)
T 3a8u_X 365 LHGIKGAKNVI---------------DIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG------------- 416 (449)
T ss_dssp HHTTTTSTTEE---------------EEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE-------------
T ss_pred HHHHhcCCCeE---------------EEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC-------------
Confidence 76532111010 01123578899985321 1 1123444443334333221
Q ss_pred CCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 349 HKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+++||+++...++++++.+.++|+++.
T Consensus 417 ---------------g~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 417 ---------------GDTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp ---------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------CCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 2689999998888888888888887653
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=197.68 Aligned_cols=280 Identities=11% Similarity=0.077 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhCCCc-----EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHH----HhcccCC--cEEEeeC
Q psy12791 62 RNLERCIASLEEAKH-----GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFA----QVAPKIG--LEVDFVD 129 (393)
Q Consensus 62 ~~lr~~la~~~~~~~-----~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~----~~~~~~g--~~v~~~~ 129 (393)
+.+++.+++++|.+. +|++++|++++ .++.++++|||+|++++++|+++..... ..+...| .+++.++
T Consensus 93 ~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~ 172 (483)
T 1rv3_A 93 TLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYK 172 (483)
T ss_dssp HHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEEC
T ss_pred HHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECc
Confidence 345588999999872 49999999776 6678889999999999999986421110 1122233 4555553
Q ss_pred CC------CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----CCCCCcCc
Q psy12791 130 LR------KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-----KSLPWGVD 197 (393)
Q Consensus 130 ~~------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-----~~~~~~~d 197 (393)
.+ |++++++.+. +++++|++ +++|++ .+.|+++|.++|+++ |+++++|++|..+... .++. ++|
T Consensus 173 ~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~~-~~d 248 (483)
T 1rv3_A 173 VNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPFE-HCH 248 (483)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGGG-TCS
T ss_pred cccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCCC-CCc
Confidence 22 7899999997 78999999 999998 899999999999999 9999999998854321 1221 679
Q ss_pred EEEEcccccccCCCCceEEEEEecCh--------------HHHHHHHHHHH-hcCCCCCHHHH-H--HHHhccC--CHHH
Q psy12791 198 IVLYSLTKYMNGHSDVVMGATVTNDD--------------SLQARLKFLQN-SMGVVPSPFDC-W--LVTRGLK--TLPC 257 (393)
Q Consensus 198 i~~~S~sK~~~G~~G~r~G~~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~-~--~~~~~~~--~~~~ 257 (393)
+++.|+||++.|+ |+||++++++ ++.+.+..... ...+.+..... . .+..... .+..
T Consensus 249 iv~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~ 325 (483)
T 1rv3_A 249 VVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKE 325 (483)
T ss_dssp EEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred EEEecCcccCCCC---CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHH
Confidence 9999999998544 6799999853 24444433221 11122222221 1 1222222 3455
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc--C-CHHHHHHHHHhcCccccccc-
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN--G-GAEETRIFLESLLIFRCAES- 333 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~- 333 (393)
..++..++++.+.+.|.+. ++. +..++ . ...++++.+. + +.++...+++. .++.++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-g~~-~~~~~--------------~-~~~~~~v~~~~~g~~~~~~~~~L~~---~gI~v~~ 385 (483)
T 1rv3_A 326 YQRQVVANCRALSAALVEL-GYK-IVTGG--------------S-DNHLILVDLRSKGTDGGRAEKVLEA---CSIACNK 385 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCE-EGGGS--------------C-SSSEEEEEGGGGTCCHHHHHHHHHH---TTEECEE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCE-eccCC--------------C-CCceEEEeccCCCCCHHHHHHHHHh---CCcEEec
Confidence 6777788889999999876 432 22121 0 1235566663 2 34455555544 344443
Q ss_pred ---cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh----HHHHHHHHHHHHHh
Q psy12791 334 ---LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY----TDLIADLDQALRKA 390 (393)
Q Consensus 334 ---~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~----~~~i~~l~~al~~~ 390 (393)
+|..+ + ..++.+|||++..++ +++++.+.++|.++
T Consensus 386 ~~~pg~~~-----~-----------------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~ 427 (483)
T 1rv3_A 386 NTCPGDKS-----A-----------------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRG 427 (483)
T ss_dssp ECCSSCSC-----T-----------------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCc-----C-----------------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHH
Confidence 33210 0 125799999998877 88888888887754
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=197.33 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=153.4
Q ss_pred CCCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhc-
Q psy12791 22 DQWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTHLL- 94 (393)
Q Consensus 22 ~~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~- 94 (393)
.+++| +++. ++++. ++.+.+++.+++.....+ .|+++...+|+++++++++.. +.+++++|++++ .++..+.
T Consensus 55 ~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~ 133 (434)
T 3l44_A 55 NKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY-GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARA 133 (434)
T ss_dssp CEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC-CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence 35677 5543 67764 455555544332211112 356788899999999998634 455556677777 5555443
Q ss_pred -CCCCeEEEcCCCccchHHHHHHhcccCC-------------------cEEEeeCCCCHHHHHhhcC---CCCcEEEEec
Q psy12791 95 -SAGDHIISGDDVYGGTYRYFAQVAPKIG-------------------LEVDFVDLRKIENLIKYIK---PNTKMVWIEN 151 (393)
Q Consensus 95 -~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------------------~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~ 151 (393)
.++++|++.+++|++.. .......| .++..++.+|++++++.+. +++++|+++.
T Consensus 134 ~~~~~~vi~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 210 (434)
T 3l44_A 134 YTGRTKIMKFAGCYHGHS---DLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEP 210 (434)
T ss_dssp HHCCCEEEEETTCCCCSS---GGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred hhCCCEEEEEcCccCCCc---HHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcC
Confidence 36789999999997632 11111111 1456667778999998886 4567777777
Q ss_pred CCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCCC-----CCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 152 PTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 152 p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
++|++|.+.+ +++|.++|++| |++||+||+|.++...... ....|+ .|+||.+ | +|+|+||++++
T Consensus 211 ~~~~~G~~~~~~~~l~~l~~l~~~~-~illI~DEv~~g~~~g~~~~~~~~~~~~di--~t~sK~~-~-~G~~iG~~~~~- 284 (434)
T 3l44_A 211 IVGNFGIVEPKPGFLEKVNELVHEA-GALVIYDEVITAFRFMYGGAQDLLGVTPDL--TALGKVI-G-GGLPIGAYGGK- 284 (434)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTSSSSCHHHHHTCCCSE--EEEEGGG-G-TTSSCEEEEEC-
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccceeccccHHHHHcCCCCCe--eehhhhh-c-CCcCeeeEEEc-
Confidence 7888888887 99999999999 9999999999865111111 123454 4788999 5 68999999987
Q ss_pred hHHHHHHHHHH---HhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhh
Q psy12791 223 DSLQARLKFLQ---NSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~ 275 (393)
+++++.+.... .......++..+..+...++.+ +...++..++.+.+.+.|++
T Consensus 285 ~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 285 KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 88877664311 1112234555555444433211 22344555555555555543
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-21 Score=191.50 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=155.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHh-cccCCcEEEeeCCC--
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQV-APKIGLEVDFVDLR-- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~-~~~~g~~v~~~~~~-- 131 (393)
+++...++++.+|+++|.+..+++++|+++ + .++.+++++||+|+++.++|.+.+ .. ++..|+++++++..
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~----~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVY----NSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHH----HHHTTTTCCEEEEECEEEC
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHH----HHHHHHCCCEEEEEeCCcc
Confidence 456788999999999999988999999865 6 777888999999999999998633 33 67789998887641
Q ss_pred --------CHHHH-----HhhcCCC------C----cEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc
Q psy12791 132 --------KIENL-----IKYIKPN------T----KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188 (393)
Q Consensus 132 --------d~~~l-----~~~l~~~------~----~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~ 188 (393)
|++++ ++++.++ + ++|++++| ||+|.+.|+++|.++|+++ ++++++||+|+....
T Consensus 247 ~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~-g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 247 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL-CDYIEFDSAWVGYEQ 324 (730)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG-BSEEEEECTTCCGGG
T ss_pred ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc-CCeEEEEcccccccc
Confidence 66667 8888765 5 89999999 5899999999999999999 999999999975321
Q ss_pred -------cCCCCC---cCc----EEEEcccccccCCCCceEEEEEecChHH--------HHHHHHHHHhc-CCCCCHHHH
Q psy12791 189 -------QKSLPW---GVD----IVLYSLTKYMNGHSDVVMGATVTNDDSL--------QARLKFLQNSM-GVVPSPFDC 245 (393)
Q Consensus 189 -------~~~~~~---~~d----i~~~S~sK~~~G~~G~r~G~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~ 245 (393)
..++.. +.| +++.|+||+++|+.+ +|+++.+++.+ ..+++...... ...++....
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~i 402 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 402 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCC--EEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHH
Confidence 122332 666 999999999866655 67776654432 12333222222 233333322
Q ss_pred HH---HHhccCC--HHHHHHHHHHHHHHHHHHHhh-CCCcc
Q psy12791 246 WL---VTRGLKT--LPCRLKEHERGSIEVAKFLES-HPCVK 280 (393)
Q Consensus 246 ~~---~~~~~~~--~~~~~~~~~~~~~~l~~~l~~-~~~~~ 280 (393)
.. +.+.++. ...++++..++.+.+++.|++ .+++.
T Consensus 403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~ 443 (730)
T 1c4k_A 403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR 443 (730)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence 21 1121222 344677777888888999987 56654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=190.51 Aligned_cols=322 Identities=13% Similarity=0.052 Sum_probs=190.5
Q ss_pred CCCC-CCCCC--CCcc-CCeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCC-cEEEec-cHHHHH-HHHHHhc
Q psy12791 23 QWRS-QCVIP--PIIL-STTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAK-HGLCYS-SGLGAV-TAVTHLL 94 (393)
Q Consensus 23 ~~~~-~~~~~--p~~~-~~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~-~G~~al-~~~~~~~ 94 (393)
.++| +++.+ +++. ++.+.+++.+.+... +....|+.+...++++.++++++.+ +.++++ +|++++ .++..+.
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~ 123 (433)
T 1zod_A 44 AILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK 123 (433)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 4556 44443 5553 344444433321111 1113455677889999999999854 556555 456667 5554332
Q ss_pred --CCCCeEEEcCCCccchHHHHHHhc----------ccCCcEEEeeCC------C---------CHHHHHhhcC----CC
Q psy12791 95 --SAGDHIISGDDVYGGTYRYFAQVA----------PKIGLEVDFVDL------R---------KIENLIKYIK----PN 143 (393)
Q Consensus 95 --~~gd~vl~~~~~y~~~~~~~~~~~----------~~~g~~v~~~~~------~---------d~~~l~~~l~----~~ 143 (393)
..+|+|++.+|+|++......... ...|+..+.++. + |++++++.++ ++
T Consensus 124 ~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 203 (433)
T 1zod_A 124 LVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203 (433)
T ss_dssp HHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSC
T ss_pred HhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCC
Confidence 346799999999976432211111 112555554432 1 3888888886 45
Q ss_pred CcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCcCcEEEEcccccccCCCCc
Q psy12791 144 TKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWGVDIVLYSLTKYMNGHSDV 213 (393)
Q Consensus 144 ~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~~di~~~S~sK~~~G~~G~ 213 (393)
+++|+++..+||||.+.+ +++|.++|+++ |+++|+||+|+++.. .... ....|+ .|+||.++ . |+
T Consensus 204 ~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~g~~g~~~~~~~~~~~~di--~s~sK~~~-~-G~ 278 (433)
T 1zod_A 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTMFACQRDGVTPDI--LTLSKTLG-A-GL 278 (433)
T ss_dssp EEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCSE--EEECHHHH-T-TS
T ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCchHhHHhhcCCCCCE--EEeccccc-C-CC
Confidence 667666555688998766 99999999999 999999999996422 1111 123454 48899994 4 89
Q ss_pred eEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhh----CCCcceEeCC
Q psy12791 214 VMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLES----HPCVKGVLHP 285 (393)
Q Consensus 214 r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~----~~~~~~v~~~ 285 (393)
|+||++++ +++++.+...... .....++..+..+...++.+. ...++..++.+.+.+.|++ ++.+..+
T Consensus 279 ~ig~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--- 354 (433)
T 1zod_A 279 PLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV--- 354 (433)
T ss_dssp SCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE---
T ss_pred CeeEEEEh-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE---
Confidence 99999997 7888877542111 112235555554444443221 1334445555555555543 2332211
Q ss_pred CCCCCcchHHHhhhcCCCcceEEEEEcCC-------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHh
Q psy12791 286 GLPSHPNHELAKSQWSGTSGMLSFYVNGG-------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRD 358 (393)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~ 358 (393)
.+.|.++++.+.+. ......+.+.+...++.+..|+.+
T Consensus 355 ---------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------- 399 (433)
T 1zod_A 355 ---------------RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP-------------------- 399 (433)
T ss_dssp ---------------EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT--------------------
T ss_pred ---------------EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC--------------------
Confidence 12356788877421 123455666554445555544321
Q ss_pred hcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 359 ALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 359 ~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+ .++++|+++++..++++++.+.++|+++.
T Consensus 400 --~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 400 --G-MGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp --T-SCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --C-CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 0 14899999999988888888888877653
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=196.57 Aligned_cols=324 Identities=13% Similarity=0.080 Sum_probs=198.2
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCCC-ccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhc
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTHLL 94 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~~-~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~ 94 (393)
..++| +++ .++++.+ +.+.+++.+.+... +....++++...++++.|+++++.+ +.+++++|++++ .++..+.
T Consensus 49 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~ 128 (452)
T 3n5m_A 49 KRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIAR 128 (452)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHH
Confidence 45678 555 4677654 45555443332221 2123355678899999999998865 544445556667 5555544
Q ss_pred -----C---CCCeEEEcCCCccchHHHHHHhc---------ccCCcEEEeeCC--------CC---------HHHHHhhc
Q psy12791 95 -----S---AGDHIISGDDVYGGTYRYFAQVA---------PKIGLEVDFVDL--------RK---------IENLIKYI 140 (393)
Q Consensus 95 -----~---~gd~vl~~~~~y~~~~~~~~~~~---------~~~g~~v~~~~~--------~d---------~~~l~~~l 140 (393)
. ++|+|++.+++|++......... ......+..++. +| ++++++.+
T Consensus 129 ~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 208 (452)
T 3n5m_A 129 QYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVM 208 (452)
T ss_dssp HHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHH
Confidence 4 78999999999986432211110 001112344433 23 88898888
Q ss_pred C----CCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcccc
Q psy12791 141 K----PNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSLTK 205 (393)
Q Consensus 141 ~----~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~sK 205 (393)
. +++++|+++.+ +| ||.+++ +++|.++|++| |++||+||+|..+.. ... .....|++ ++||
T Consensus 209 ~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK 284 (452)
T 3n5m_A 209 TWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH-GALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAK 284 (452)
T ss_dssp HHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECG
T ss_pred HhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcccccchhhhcCCCCCEE--eecc
Confidence 6 45788888888 89 999887 99999999999 999999999986421 111 11234555 6889
Q ss_pred cccCCCC-ceEEEEEecChHHHHHHHH---HH---HhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh--
Q psy12791 206 YMNGHSD-VVMGATVTNDDSLQARLKF---LQ---NSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE-- 274 (393)
Q Consensus 206 ~~~G~~G-~r~G~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~-- 274 (393)
.++ . | +|+||++++ +++++.+.. .. .......++..+..+...++.+. ...++..++.+.+.+.|+
T Consensus 285 ~l~-~-G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 361 (452)
T 3n5m_A 285 GIT-S-AYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE 361 (452)
T ss_dssp GGG-T-TSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-C-CCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 994 5 8 999999997 888876632 11 11223345666665555444321 123444455555555554
Q ss_pred --hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--------HHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 275 --SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG--------AEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 275 --~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.++.+..+ ++.|.++++.+..+ .+....+.+.+...++.+..++.+..
T Consensus 362 ~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~---- 419 (452)
T 3n5m_A 362 IGEHPLVGDI------------------RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA---- 419 (452)
T ss_dssp HTTCTTEEEE------------------EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST----
T ss_pred HhcCCCeEEE------------------EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC----
Confidence 33433222 22356777776321 23344555555544555554432210
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+++|||+++...++++++.+.++|+++.
T Consensus 420 -----------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 420 -----------------GYNNILTLAPPLVISSEEIAFVIGTLKTAM 449 (452)
T ss_dssp -----------------TCCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 125899999999999999999888887664
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-23 Score=198.14 Aligned_cols=321 Identities=12% Similarity=0.062 Sum_probs=191.1
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCCCccc--cCCCCchHHHHHHHHHHHhCC---CcEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQGFEY--SRSNNPTRRNLERCIASLEEA---KHGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~~~y--~~~~~~~~~~lr~~la~~~~~---~~~i~~~~G~~al-~~~~ 91 (393)
..++| +++ .++++. ++.+.+++.+++.....| ..++++...+|++.|+++++. ++.+++++|++|+ .++.
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk 140 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVK 140 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHH
Confidence 35677 555 677765 445555443332222223 346678889999999999863 2456666677777 5554
Q ss_pred Hhc--CCCCeEEEcCCCccchHHHHHHh----------cccCCcEEEeeCCC------------------CHHHHHhhc-
Q psy12791 92 HLL--SAGDHIISGDDVYGGTYRYFAQV----------APKIGLEVDFVDLR------------------KIENLIKYI- 140 (393)
Q Consensus 92 ~~~--~~gd~vl~~~~~y~~~~~~~~~~----------~~~~g~~v~~~~~~------------------d~~~l~~~l- 140 (393)
... ..+++|++.+++|++.......+ .......+..++.. +++.+++.+
T Consensus 141 ~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 220 (451)
T 3oks_A 141 IARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVID 220 (451)
T ss_dssp HHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHH
Confidence 433 24588999999998644222211 11111244555443 133333333
Q ss_pred ---CCC-CcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CC-----CCCcCcEEEEccccc
Q psy12791 141 ---KPN-TKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KS-----LPWGVDIVLYSLTKY 206 (393)
Q Consensus 141 ---~~~-~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~-----~~~~~di~~~S~sK~ 206 (393)
.++ +++|+++..+++.|.+.+ +++|.++|++| |++||+||+|..+... .. .....|++ |+||.
T Consensus 221 ~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~ 297 (451)
T 3oks_A 221 KQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN-DVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKG 297 (451)
T ss_dssp HHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGG
T ss_pred hhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCCccccchhhhhcCCCCCee--eehhh
Confidence 333 455555555555566666 99999999999 9999999999864211 11 11234555 78899
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh----hCCCcc
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE----SHPCVK 280 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~----~~~~~~ 280 (393)
++ . |+|+||++++ +++++.+...........++..+..+...++.+. ...++..++.+.+.+.|+ .++.+.
T Consensus 298 l~-~-G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 374 (451)
T 3oks_A 298 IA-G-GLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIG 374 (451)
T ss_dssp GG-T-TSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred hh-C-CcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 94 4 8999999997 8887766533332333456666665555544322 123444444444444443 344432
Q ss_pred eEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCCh
Q psy12791 281 GVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK 354 (393)
Q Consensus 281 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~ 354 (393)
.+ ++.|.++++.+.. +......+.+.+...++.+..++.
T Consensus 375 ~~------------------~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------- 419 (451)
T 3oks_A 375 DV------------------RGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT----------------- 419 (451)
T ss_dssp EE------------------EEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT-----------------
T ss_pred EE------------------EEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC-----------------
Confidence 22 2236788888831 344566666666554555433221
Q ss_pred hhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 355 ETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 355 ~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+++|+++++..++++++.+.++|+++.
T Consensus 420 --------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 420 --------YGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp --------TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 14789999999999888888888887654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=191.09 Aligned_cols=286 Identities=14% Similarity=0.164 Sum_probs=186.0
Q ss_pred chHHHHHHH----HHHHhCCCc-----------EEEeccHHHHH-HHHHHhcC---C------CC--------e--EEEc
Q psy12791 59 PTRRNLERC----IASLEEAKH-----------GLCYSSGLGAV-TAVTHLLS---A------GD--------H--IISG 103 (393)
Q Consensus 59 ~~~~~lr~~----la~~~~~~~-----------~i~~~~G~~al-~~~~~~~~---~------gd--------~--vl~~ 103 (393)
+...+++++ +++++|.+. .+++++|++++ .++.+... + || . |+++
T Consensus 109 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s 188 (486)
T 1js3_A 109 PACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188 (486)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEEC
Confidence 455555554 567778763 46666667775 55544321 1 42 3 7789
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCc------EEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTK------MVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~------~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
.++|.+ +.+.++..|++++.+|.+ |+++|++++.++++ +|++++|+||||.+.|+++|.++|+++
T Consensus 189 ~~~h~s----~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~ 264 (486)
T 1js3_A 189 DQAHSS----VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264 (486)
T ss_dssp TTCCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred CCCcHH----HHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc
Confidence 999985 667778889999999985 79999999976654 888899999999999999999999999
Q ss_pred CCcEEEEeCccCcccccCC-CC------CcCcEEEEcccccccCCCCceEEEEEecChHH-HHHHHHHHHhc--------
Q psy12791 173 PDILLVLDNTFLTAYYQKS-LP------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSM-------- 236 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~-~~------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~-~~~~~~~~~~~-------- 236 (393)
|+++++|++|+.+....+ .. .++|+++.|+||+++ .| .++|+++++++.. .+.+.....+.
T Consensus 265 -~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~-~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 341 (486)
T 1js3_A 265 -DIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLL-VN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSG 341 (486)
T ss_dssp -TCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSS-CC-SSCEEEEESCHHHHHGGGC------------CC
T ss_pred -CCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcC-CC-cceEEEEEeCHHHHHHHhcCCchhhCCCccccc
Confidence 999999999997654221 11 257999999999995 44 4699999986654 33331111100
Q ss_pred ------------CCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCC
Q psy12791 237 ------------GVVPSPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSG 302 (393)
Q Consensus 237 ------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 302 (393)
+........+.+++ +.+.+....++..++++.+.+.|++.|++..+..|.
T Consensus 342 ~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---------------- 405 (486)
T 1js3_A 342 LITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT---------------- 405 (486)
T ss_dssp SCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC----------------
T ss_pred CCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCc----------------
Confidence 00112233333332 223455667777788889999998877765221121
Q ss_pred CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHH
Q psy12791 303 TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIA 381 (393)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~ 381 (393)
.+++.|.+.+.......+.+.|...+.....++. + ...+++|+++ +..+++++++
T Consensus 406 -~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------~---------~~~~~lRi~~~~~~~t~~di~ 461 (486)
T 1js3_A 406 -LGLVCFRLKGSDGLNEALLERINSARKIHLVPCR--------------L---------RGQFVLRFAICSRKVESGHVR 461 (486)
T ss_dssp -SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE--------------E---------TTEEEEEEECCCTTCCHHHHH
T ss_pred -eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEE--------------E---------CCEEEEEEEeCCCCCCHHHHH
Confidence 4678888854333346666665432321111000 0 0147999998 4557788888
Q ss_pred HHHHHHHHhh
Q psy12791 382 DLDQALRKAC 391 (393)
Q Consensus 382 ~l~~al~~~~ 391 (393)
.+.++|+++.
T Consensus 462 ~~~~~l~~~~ 471 (486)
T 1js3_A 462 LAWEHIRGLA 471 (486)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776553
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=193.69 Aligned_cols=316 Identities=12% Similarity=0.054 Sum_probs=189.4
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCC---CccccCCCCchHHHHHHHHHHHhCCC-cEEEe-ccHHHHH-HHHH
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQ---GFEYSRSNNPTRRNLERCIASLEEAK-HGLCY-SSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~---~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~-~~G~~al-~~~~ 91 (393)
..++| +++ .++++.+ +.+.+++.+++.. .+.+..++++...+|++.|+++++.+ +.+++ ++|++++ .++.
T Consensus 50 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~ 129 (459)
T 4a6r_A 50 NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIR 129 (459)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHH
Confidence 45678 666 6777664 4555444332211 12234567788899999999998754 45555 5556667 6665
Q ss_pred HhcC--------CCCeEEEcCCCccchHHHHHHh---------cccC--CcEEEeeCC----C---C--------HHHHH
Q psy12791 92 HLLS--------AGDHIISGDDVYGGTYRYFAQV---------APKI--GLEVDFVDL----R---K--------IENLI 137 (393)
Q Consensus 92 ~~~~--------~gd~vl~~~~~y~~~~~~~~~~---------~~~~--g~~v~~~~~----~---d--------~~~l~ 137 (393)
.+.. +++.|++.+|+|++........ .... +...+.+|. . | +++++
T Consensus 130 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le 209 (459)
T 4a6r_A 130 MVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLE 209 (459)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHH
Confidence 5543 5789999999998643221111 1111 223333332 1 2 67788
Q ss_pred hhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CCC-----CCcCcEEEEcc
Q psy12791 138 KYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSL-----PWGVDIVLYSL 203 (393)
Q Consensus 138 ~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~~-----~~~~di~~~S~ 203 (393)
+.+. +++++|+++.++|++|.+.+ +++|.++|++| |++||+||+|..+... ... ....|++ ++
T Consensus 210 ~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~--t~ 286 (459)
T 4a6r_A 210 EKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY-DVLLVADEVICGFGRTGEWFGHQHFGFQPDLF--TA 286 (459)
T ss_dssp HHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EE
T ss_pred HHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccchHhhcCCCCCee--eh
Confidence 8775 34667777777777888776 99999999999 9999999999864211 111 1234565 57
Q ss_pred cccccCCCCceEEEEEecChHHHHHHH-----HHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHH-HHHHHHHHHH--
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLK-----FLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHE-RGSIEVAKFL-- 273 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~l-- 273 (393)
||.++ ..|+|+||++++ +++++.+. .....+ ..++..+..+...++.+. ...++.. ++...+.+.|
T Consensus 287 sK~l~-gg~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~--~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (459)
T 4a6r_A 287 AKGLS-SGYLPIGAVFVG-KRVAEGLIAGGDFNHGFTY--SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRE 362 (459)
T ss_dssp CGGGG-TTSSCCEEEEEC-HHHHHHHHHHCTTHHHHHH--CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhc-CCCCCccceeeC-HHHHHHhhcCCCcccCCCC--CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 89994 555899999997 88888876 222233 335666555555444221 1233444 4444444444
Q ss_pred --hhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC----------HHHHHHHHHhcCccccccccCCccccc
Q psy12791 274 --ESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG----------AEETRIFLESLLIFRCAESLGGIESLA 341 (393)
Q Consensus 274 --~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~g~~~s~~ 341 (393)
..++.+..+ ++.|.++.+.+..+ ......+.+.+...++.+..+
T Consensus 363 ~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------ 418 (459)
T 4a6r_A 363 TFSRFEHVDDV------------------RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC------ 418 (459)
T ss_dssp HHTTCTTEEEE------------------EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE------
T ss_pred HHhcCCCeEEE------------------EEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC------
Confidence 334433222 22356778887421 112444545444334333221
Q ss_pred cCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 342 DLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+++||++++..++++++.+.++|+++
T Consensus 419 ----------------------g~~iRi~~~~~~t~e~i~~~l~~l~~~ 445 (459)
T 4a6r_A 419 ----------------------GDHIVSAPPLVMTRAEVDEMLAVAERC 445 (459)
T ss_dssp ----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 268999999888888887777777654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=192.05 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=144.0
Q ss_pred HHHH-HHHHHHhCCCcEEE-eccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhccc--CCcEEEeeCCC-----
Q psy12791 62 RNLE-RCIASLEEAKHGLC-YSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK--IGLEVDFVDLR----- 131 (393)
Q Consensus 62 ~~lr-~~la~~~~~~~~i~-~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~--~g~~v~~~~~~----- 131 (393)
+++. +.+++++|.+...+ +++|++++ .++.+++++||+|++++|+|++.+. +...... .+..++.++.+
T Consensus 93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (447)
T 3h7f_A 93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLT-HGMRLNFSGKLYENGFYGVDPATHL 171 (447)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGG-GTCTTSHHHHSSEEEEECCCTTTCS
T ss_pred HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccc-hhhhhhhcCCeeEEEEcCcCcccCC
Confidence 3344 88999999986555 89999887 7788889999999999999875211 0000111 23456666542
Q ss_pred -CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc-----cCCCCCcCcEEEEccc
Q psy12791 132 -KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVLYSLT 204 (393)
Q Consensus 132 -d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~-----~~~~~~~~di~~~S~s 204 (393)
|++++++.+. .++++|++++|+||++. ++++|.++|+++ |+++|+||+|..+.. ..+. .+.|+++.|+|
T Consensus 172 ~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~s 247 (447)
T 3h7f_A 172 IDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEV-GAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVH 247 (447)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESS
T ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHc-CCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCC
Confidence 7899998885 36899999999999876 999999999999 999999999865421 1122 25689999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhc--CCCCCHHHHH--HHHhc-cC-CHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSM--GVVPSPFDCW--LVTRG-LK-TLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
|+++| .|+||++++ +++.+.+....... +....+..+. .+... .+ .+....++..++.+.+.+.|++.
T Consensus 248 K~l~G---~~gG~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 248 KTLGG---GRSGLIVGK-QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp GGGCC---CSCEEEEEC-GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred cCCCC---CCeEEEEEC-HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99844 478999997 77877776554322 2222221221 22222 22 34556777888888888888754
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=192.34 Aligned_cols=320 Identities=14% Similarity=0.094 Sum_probs=190.4
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCCC--ccccCCCCchHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQG--FEYSRSNNPTRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~--~~y~~~~~~~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~ 91 (393)
..++| +++ .++++. ++.+.+++.+++... +.+..++++...+|++.|+++++.+ +.+++++|++|+ .++.
T Consensus 64 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk 143 (453)
T 4ffc_A 64 NSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIK 143 (453)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHH
Confidence 45678 666 677765 455555443332112 2233467788899999999998732 455556667777 5554
Q ss_pred Hhc--CCCCeEEEcCCCccchHHHHHHhcc----------cCCcEEEeeCCC----C-------------HHHHHhhcCC
Q psy12791 92 HLL--SAGDHIISGDDVYGGTYRYFAQVAP----------KIGLEVDFVDLR----K-------------IENLIKYIKP 142 (393)
Q Consensus 92 ~~~--~~gd~vl~~~~~y~~~~~~~~~~~~----------~~g~~v~~~~~~----d-------------~~~l~~~l~~ 142 (393)
... ..++.|++.+++|++.......+.. .....+..++.. | ++.+++.+.+
T Consensus 144 ~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~ 223 (453)
T 4ffc_A 144 VARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA 223 (453)
T ss_dssp HHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC
Confidence 332 3468999999999865432222111 111134444432 3 3566666655
Q ss_pred CCcEEEEecCCCCc-ccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCCC-----CcCcEEEEcccccccCCC
Q psy12791 143 NTKMVWIENPTNPL-MTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSLP-----WGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 143 ~~~~v~l~~p~npt-G~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~~-----~~~di~~~S~sK~~~G~~ 211 (393)
++.+++++.|+|++ |.+.+ +++|.++|++| |++||+||+|..+.. ..... ...|++ +|||.++ .
T Consensus 224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~-~- 298 (453)
T 4ffc_A 224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN-GVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIA-G- 298 (453)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG-T-
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhc-C-
Confidence 55555555666655 55555 99999999999 999999999986421 11111 123444 6889994 5
Q ss_pred CceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHH----hhCCCcceEeCC
Q psy12791 212 DVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFL----ESHPCVKGVLHP 285 (393)
Q Consensus 212 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l----~~~~~~~~v~~~ 285 (393)
|+|+||++++ +++++.+...........++..+..+...++.+. ...++..++.+.+.+.| ..++.+..+
T Consensus 299 G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 374 (453)
T 4ffc_A 299 GMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV--- 374 (453)
T ss_dssp TSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE---
T ss_pred CcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE---
Confidence 8999999997 8887766533322233446666655554443221 12333344444444444 344443222
Q ss_pred CCCCCcchHHHhhhcCCCcceEEEEEcC------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 286 GLPSHPNHELAKSQWSGTSGMLSFYVNG------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
++.|.++++.+.. +.+....+.+.+...++.+..++.
T Consensus 375 ---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------- 417 (453)
T 4ffc_A 375 ---------------RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT---------------------- 417 (453)
T ss_dssp ---------------EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT----------------------
T ss_pred ---------------EeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC----------------------
Confidence 2235788888831 344566666666555555543221
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+.+|+++++..++++++.+.++|+++
T Consensus 418 ---~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 445 (453)
T 4ffc_A 418 ---FGNVIRLLPPLVIGDDLLDEGITALSDI 445 (453)
T ss_dssp ---TSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1478999999888888777777776654
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=186.75 Aligned_cols=290 Identities=11% Similarity=0.091 Sum_probs=191.0
Q ss_pred CCchHHHHHHHH----HHHhCCC----cEEEeccHHHHH-HHHHHhcC--------------CCCeEEEcCCCccchHHH
Q psy12791 57 NNPTRRNLERCI----ASLEEAK----HGLCYSSGLGAV-TAVTHLLS--------------AGDHIISGDDVYGGTYRY 113 (393)
Q Consensus 57 ~~~~~~~lr~~l----a~~~~~~----~~i~~~~G~~al-~~~~~~~~--------------~gd~vl~~~~~y~~~~~~ 113 (393)
..|...++++.+ ++++|.+ ..+++++|+.++ .++.+... +++.|+++.++|.+
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s---- 204 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS---- 204 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH----
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH----
Confidence 356666666654 6667765 345566666675 55544432 56789999999985
Q ss_pred HHHhcccCCc---EEEeeCCC-----CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEE
Q psy12791 114 FAQVAPKIGL---EVDFVDLR-----KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179 (393)
Q Consensus 114 ~~~~~~~~g~---~v~~~~~~-----d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~liv 179 (393)
+.+.++..|+ +++.++.+ |+++|++++.++ +++|++++++|+||.+.|+++|.++|+++ |+++++
T Consensus 205 ~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~-~~~lhv 283 (511)
T 3vp6_A 205 IKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY-NLWLHV 283 (511)
T ss_dssp HHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH-TCEEEE
T ss_pred HHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc-CCEEEE
Confidence 5666777787 88888876 899999998754 78999999999999999999999999999 999999
Q ss_pred eCccCcccccCC-----CC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-Hhc---------------
Q psy12791 180 DNTFLTAYYQKS-----LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-NSM--------------- 236 (393)
Q Consensus 180 Dea~~~~~~~~~-----~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-~~~--------------- 236 (393)
|++|+.+....+ +. .++|+++.++||+++++.| .|+++.+++.+.+...... .+.
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 361 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGD 361 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGG
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHHHHHHhccCCccccCcccccccccCccC
Confidence 999998655222 11 2569999999999965655 7888887676655432110 010
Q ss_pred -----CCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEe--CCCCCCCcchHHHhhhcCCCcceE
Q psy12791 237 -----GVVPSPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVL--HPGLPSHPNHELAKSQWSGTSGML 307 (393)
Q Consensus 237 -----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~--~~~l~~~~~~~~~~~~~~~~~~~~ 307 (393)
+........+.+++ +.+.+..++++..++++.+.+.|++.|+++.+. .|. .+++
T Consensus 362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~-----------------~~~v 424 (511)
T 3vp6_A 362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE-----------------HTNV 424 (511)
T ss_dssp GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCS-----------------SSCE
T ss_pred CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC-----------------eEEE
Confidence 00112233333333 234566778888899999999999887765322 121 3456
Q ss_pred EEEEcCC--------HH-------HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-
Q psy12791 308 SFYVNGG--------AE-------ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV- 371 (393)
Q Consensus 308 ~~~~~~~--------~~-------~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~- 371 (393)
.|.+.+. .. .+..+.+.|...++.+.. . .+. +...+++|+++
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~--~-----~~~---------------~~~~~~lRi~~~ 482 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG--Y-----QPQ---------------GDKANFFRMVIS 482 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE--E-----EEE---------------TTEEEEEEECCC
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE--E-----EEe---------------CCceEEEEEEec
Confidence 6654211 11 122344444332211100 0 000 01135799999
Q ss_pred cCCChHHHHHHHHHHHHHhhc
Q psy12791 372 GVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 372 ~~~~~~~~i~~l~~al~~~~~ 392 (393)
+..+++++++.+.++++++.+
T Consensus 483 ~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 483 NPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp CTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999987753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=186.08 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHH-hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----C
Q psy12791 61 RRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----K 132 (393)
Q Consensus 61 ~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~-~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d 132 (393)
..++++.+++++|.+ +++++++|+++ + .+..+ .+++||+|+++.++|+++...+...++..|++++.++.+ |
T Consensus 110 ~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d 189 (438)
T 1wyu_A 110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP 189 (438)
T ss_dssp HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC
T ss_pred HHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccC
Confidence 568999999999987 44566666653 3 22222 357899999999999987666666667789999999863 2
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCc-cCcccccCCCCCcCcEEEEccccccc---
Q psy12791 133 IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT-FLTAYYQKSLPWGVDIVLYSLTKYMN--- 208 (393)
Q Consensus 133 ~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea-~~~~~~~~~~~~~~di~~~S~sK~~~--- 208 (393)
+++ ++++|++|++++| ||||.+.|+++|.++|+++ |+++++|.. .+.+....+...++|+++.|.+| |+
T Consensus 190 ~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~-g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk-~~~~~ 262 (438)
T 1wyu_A 190 LPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA-GALFVAVADPLSLGVLKPPGAYGADIAVGDGQS-LGLPM 262 (438)
T ss_dssp CCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT-TCEEEEECCTTGGGTBCCHHHHTCSEEEEECTT-TTCCC
T ss_pred HHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc-CCEEEEEechhhccCcCCCccCCCCEEEECCcc-cCCCc
Confidence 333 6678999999999 9999999999999999999 999996633 32222222323578999999444 21
Q ss_pred CCCCceEEEEEecChHHHHHHHH-------------------------HHHhcCCC-C---CHHHHHHH---Hhcc--CC
Q psy12791 209 GHSDVVMGATVTNDDSLQARLKF-------------------------LQNSMGVV-P---SPFDCWLV---TRGL--KT 254 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~~~-------------------------~~~~~~~~-~---~~~~~~~~---~~~~--~~ 254 (393)
++.|.++||++++ +++.+.+.. .+...+.. . ....+..+ +..+ +.
T Consensus 263 ~~~Gp~~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g 341 (438)
T 1wyu_A 263 GFGGPHFGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEG 341 (438)
T ss_dssp GGGCSCCEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEc-HHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHH
Confidence 1233359999997 666554310 01111111 1 22222111 1111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccc--
Q psy12791 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAE-- 332 (393)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 332 (393)
+....++..++++.+.+.|++.+++. +..+. ..-.++.|.+..+ ...+.+.|...++.+
T Consensus 342 ~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~---------------~~~~~~~~~~~~~---~~~~~~~L~~~gi~v~~ 402 (438)
T 1wyu_A 342 LREVALKSVEMAHKLHALLLEVPGVR-PFTPK---------------PFFNEFALALPKD---PEAVRRALAERGFHGAT 402 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCE-ECSCS---------------SBCSEEEEECSSC---HHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeE-ECCCC---------------CeEEEEEEeCCCC---HHHHHHHHHHCCceecc
Confidence 44455666677788888888776654 22121 0113344554212 233444443334433
Q ss_pred ccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 333 SLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 333 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..+..+ +++++|+|++..+++++++.+.++|+++.
T Consensus 403 ~~~~~~------------------------~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 403 PVPREY------------------------GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ECCTTS------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccccc------------------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 222110 15799999999999999999999998753
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=188.38 Aligned_cols=281 Identities=15% Similarity=0.100 Sum_probs=179.2
Q ss_pred HHHHHHHHhCCC--cEEE-eccHHHHH-HHHHH----hc---------CC------CC-eEEEcCCCccchHHHHHHhcc
Q psy12791 64 LERCIASLEEAK--HGLC-YSSGLGAV-TAVTH----LL---------SA------GD-HIISGDDVYGGTYRYFAQVAP 119 (393)
Q Consensus 64 lr~~la~~~~~~--~~i~-~~~G~~al-~~~~~----~~---------~~------gd-~vl~~~~~y~~~~~~~~~~~~ 119 (393)
+++.+++++|.+ +.++ +++|++++ .++.. ++ .+ || .|+++.++|.+ +...++
T Consensus 145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s----~~~~~~ 220 (497)
T 2qma_A 145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFT----VQKSAS 220 (497)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTH----HHHHHH
T ss_pred HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHH----HHHHHH
Confidence 455599999874 4454 45556666 54443 22 12 46 78999999986 444555
Q ss_pred cCCc---EEEeeCCC-----CHHHHHhhcCCC----Cc--EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCc
Q psy12791 120 KIGL---EVDFVDLR-----KIENLIKYIKPN----TK--MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLT 185 (393)
Q Consensus 120 ~~g~---~v~~~~~~-----d~~~l~~~l~~~----~~--~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~ 185 (393)
..|. +++.+|.+ |++++++.+.++ ++ +|++++++||||.+.|+++|.++|+++ |+++++|++|+.
T Consensus 221 ~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~-~~~l~vD~a~~~ 299 (497)
T 2qma_A 221 WMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH-DMWMHVDGAYGG 299 (497)
T ss_dssp HTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH-TCEEEEEETTGG
T ss_pred HcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc-CCEEEEehhhhH
Confidence 5554 78888875 788888888643 44 888899999999999999999999999 999999999998
Q ss_pred ccccCCC-----CC-cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC----C-------------CH
Q psy12791 186 AYYQKSL-----PW-GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV----P-------------SP 242 (393)
Q Consensus 186 ~~~~~~~-----~~-~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~-------------~~ 242 (393)
+....+. .. .+|+++.|+||+++++ .++|+++++++...+.+.....+.... . ..
T Consensus 300 ~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p--~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 300 ALILSSHKSRLKGVERAHSISVDFHKLFYQT--ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp GGGGSTTGGGGTTGGGCSEEEEETTTTTCCC--SSCEEEEESCGGGGGGGCC--------------------CCSCCCTH
T ss_pred HHHhCcchHhhcCcccCCEEEEcchhccCCC--cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhH
Confidence 6653321 12 5799999999999544 369999987665444332111110000 0 11
Q ss_pred HHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH----H
Q psy12791 243 FDCWLVTRGL--KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA----E 316 (393)
Q Consensus 243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 316 (393)
...+.+++.+ +.+...+++..++++.+.+.|++.+++..+..|. .+++.|.+.+.. +
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-----------------~~~v~f~~~~~~~~~~~ 440 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS-----------------LSTVLFRATHETADLDE 440 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCS-----------------SSEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCC-----------------ceEEEEEEcCCccCHHH
Confidence 2223333333 2345566777788889999998877654221121 468888885321 2
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEe-cCCChHHHHHHHHHHHHHhh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSV-GVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~-~~~~~~~~i~~l~~al~~~~ 391 (393)
....+.+.+...++.+..+.. . ...+++|+++ +..+++++++.+.++|+++.
T Consensus 441 l~~~l~~~l~~~G~~~~~~~~------~-----------------~g~~~lRis~~~~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 441 LNKALRLEALTRGIAVLGETI------V-----------------DGKTALKFTILNPCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp HHHHHHHHHHHHTSCBCEEEE------E-----------------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeeE------E-----------------CCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 233444444332322211000 0 0146899998 88899999999998888764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=194.69 Aligned_cols=243 Identities=14% Similarity=0.101 Sum_probs=156.7
Q ss_pred CCCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHhc-
Q psy12791 22 DQWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTHLL- 94 (393)
Q Consensus 22 ~~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~~- 94 (393)
.+++| +++. ++++. ++.+.+++.+++.....+ .|+++...+|+++++++++.. +.+++++|++++ .++..+.
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~ 131 (429)
T 3k28_A 53 NEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARG 131 (429)
T ss_dssp CEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 45678 5553 77774 555655544332222212 356788999999999998533 455556677777 5554443
Q ss_pred -CCCCeEEEcCCCccchHHHHHHhcccCC-------------------cEEEeeCCCCHHHHHhhcC---CCCcEEEEec
Q psy12791 95 -SAGDHIISGDDVYGGTYRYFAQVAPKIG-------------------LEVDFVDLRKIENLIKYIK---PNTKMVWIEN 151 (393)
Q Consensus 95 -~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------------------~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~ 151 (393)
.++++|++.+++|++.. .......| .++..++.+|++++++.+. +++++|+++.
T Consensus 132 ~~~~~~vi~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 208 (429)
T 3k28_A 132 YTGRNKILKFIGCYHGHG---DSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEP 208 (429)
T ss_dssp HHTCCEEEEEETCCCCSC---GGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred hhCCCEEEEECCCcCCCc---HHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcC
Confidence 36789999999987532 11111111 1455666678999988886 3567788777
Q ss_pred CCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC------CCCcCcEEEEcccccccCCCCceEEEEEec
Q psy12791 152 PTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS------LPWGVDIVLYSLTKYMNGHSDVVMGATVTN 221 (393)
Q Consensus 152 p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~ 221 (393)
++|++|.+.+ +++|.++|++| |++||+||+|.++ .... .....|++ ++||.+ |. |+|+||++++
T Consensus 209 ~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~--t~sK~~-~~-G~~iG~~~~~ 282 (429)
T 3k28_A 209 VAGNMGVVPPQPGFLEGLREVTEQN-GALLIFDEVMTGF-RVAYNCGQGYYGVTPDLT--CLGKVI-GG-GLPVGAYGGK 282 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTT-TSSTTHHHHHHTCCCSEE--EECGGG-GT-TSCCEEEEEC
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcchHHHHhCCCCcee--hhhhhh-cC-CCCeEEEEEc
Confidence 7888888888 99999999999 9999999999865 2111 11234554 688999 43 8999999997
Q ss_pred ChHHHHHHHHHH---HhcCCCCCHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHhh
Q psy12791 222 DDSLQARLKFLQ---NSMGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 222 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ 275 (393)
+++++.+.... .......++..+..+...++.. +...++..++.+.+.+.|++
T Consensus 283 -~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 283 -AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp -HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78877664321 1112234566555444433211 45566667777777777664
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=186.08 Aligned_cols=286 Identities=9% Similarity=0.061 Sum_probs=181.4
Q ss_pred HHHHHHHHHhCCC---cEEEe-ccHHHHH-HHHHHhc--------CCC-----C-eEEEcCCCccchHHHHHHhcccCCc
Q psy12791 63 NLERCIASLEEAK---HGLCY-SSGLGAV-TAVTHLL--------SAG-----D-HIISGDDVYGGTYRYFAQVAPKIGL 123 (393)
Q Consensus 63 ~lr~~la~~~~~~---~~i~~-~~G~~al-~~~~~~~--------~~g-----d-~vl~~~~~y~~~~~~~~~~~~~~g~ 123 (393)
++++.+++++|.+ +.+++ ++|++++ .++..+. ++| + .|+++.++|.+ +...++..|.
T Consensus 136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s----~~~~~~~~g~ 211 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS----IKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH----HHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH----HHHHHHHcCC
Confidence 3445568888875 34555 4555566 5555442 246 6 78899999985 4555555555
Q ss_pred ---EEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 124 ---EVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 124 ---~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
+++.+|.+ |++++++.+.+ ++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+...
T Consensus 212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~-g~~lhvD~a~~~~~~~ 290 (504)
T 2okj_A 212 GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY-NLWLHVDAAWGGGLLM 290 (504)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH-TCEEEEEETTGGGGGG
T ss_pred CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc-CCEEEEehhhhhHHHh
Confidence 88888875 89999998865 589999999999999999999999999999 9999999999986643
Q ss_pred C-----CCC--CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH-HHHHhc-CCC-------------------CC
Q psy12791 190 K-----SLP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK-FLQNSM-GVV-------------------PS 241 (393)
Q Consensus 190 ~-----~~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~-~~~~~~-~~~-------------------~~ 241 (393)
. .+. .++|+++.|+||+++++. ++|+++++++++.+... ....+. +.. ..
T Consensus 291 ~~~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~ 368 (504)
T 2okj_A 291 SRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368 (504)
T ss_dssp CTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCC
T ss_pred CHhhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCcc
Confidence 1 122 267999999999995443 59999998655555321 111111 100 11
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----
Q psy12791 242 PFDCWLVTRGL--KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG----- 314 (393)
Q Consensus 242 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 314 (393)
....+++.+.+ +.+....++..++++.+.+.|++.++++ +..+. ....+++.|...+.
T Consensus 369 ~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~--------------~p~~~~v~f~~~~~~~~~~ 433 (504)
T 2okj_A 369 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFE-MVFNG--------------EPEHTNVCFWYIPQSLRGV 433 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE-ESSSS--------------CCSSSCEEEEECCGGGSSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EEecC--------------CCCeEEEEEEEeCcccccc
Confidence 23333333322 2344566677778888888898777654 22210 00134555654221
Q ss_pred ---H-------HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec-CCChHHHHHHH
Q psy12791 315 ---A-------EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG-VEGYTDLIADL 383 (393)
Q Consensus 315 ---~-------~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~l 383 (393)
. +....+.+.+...+.....+. +. +...+++|++++ ..+++++++.+
T Consensus 434 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~-------~~---------------~~~~~~lRis~~~~~~t~edi~~~ 491 (504)
T 2okj_A 434 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQ-------PQ---------------GDKANFFRMVISNPAATQSDIDFL 491 (504)
T ss_dssp CCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEE-------EE---------------TTEEEEEEECCCCTTCCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCcEEEEee-------EE---------------CCceEEEEEEeCCCCCCHHHHHHH
Confidence 0 012344444433221110000 00 001368999997 88999999999
Q ss_pred HHHHHHhhc
Q psy12791 384 DQALRKACK 392 (393)
Q Consensus 384 ~~al~~~~~ 392 (393)
.++|+++.+
T Consensus 492 ~~~l~~~~~ 500 (504)
T 2okj_A 492 IEEIERLGQ 500 (504)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=194.86 Aligned_cols=314 Identities=13% Similarity=0.075 Sum_probs=189.8
Q ss_pred CCCC-CCCC--CCCc-cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh-CCCcEEEeccHHHHH-HHHHH--hc
Q psy12791 23 QWRS-QCVI--PPII-LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE-EAKHGLCYSSGLGAV-TAVTH--LL 94 (393)
Q Consensus 23 ~~~~-~~~~--~p~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~-~~~~~i~~~~G~~al-~~~~~--~~ 94 (393)
.++| +++. ++++ .++.+.+++.+.+.....+ .++.+...++++.|++++ +.+..+++++|++++ .++.. .+
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLY-GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCC-SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4567 5554 4565 3455555544332222112 346678899999999998 554566666777777 55543 24
Q ss_pred CCCCeEEEcCCCccchHHHHHHhc----------ccCCc------EEEeeCCCCHHHHHhhcCC---CCcEEEEecCCCC
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVA----------PKIGL------EVDFVDLRKIENLIKYIKP---NTKMVWIENPTNP 155 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~----------~~~g~------~v~~~~~~d~~~l~~~l~~---~~~~v~l~~p~np 155 (393)
.+++.|++.+++|++......... ...|+ .+..++..|++++++.+++ ++++|+++..+|+
T Consensus 136 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~ 215 (434)
T 2epj_A 136 TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIAN 215 (434)
T ss_dssp HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCS
T ss_pred hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 456788888999976321100000 11243 3666777799999988863 5677777766788
Q ss_pred cccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHH
Q psy12791 156 LMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ 226 (393)
Q Consensus 156 tG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~ 226 (393)
||.+++ +++|.++|+++ |++||+||+|+.+..... .....|++ |+||+++ . |+|+||++++ ++++
T Consensus 216 ~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~v~~~-~~~~ 289 (434)
T 2epj_A 216 AGVIPPRREFLAALQRLSRES-GALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIG-G-GFPVGAVAGS-REVM 289 (434)
T ss_dssp SSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGG-T-TSSCEEEEEC-HHHH
T ss_pred CCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhc-C-Ccceeeeeec-HHHH
Confidence 999998 99999999999 999999999995421111 11235654 8899994 5 8999999998 7777
Q ss_pred HHHHHHHH-hcC--CCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHHHh
Q psy12791 227 ARLKFLQN-SMG--VVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHELAK 297 (393)
Q Consensus 227 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~~~ 297 (393)
+.+..... ..+ ...++..+..+...++.+. ...++..++...+.+.|++. +....+
T Consensus 290 ~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------- 354 (434)
T 2epj_A 290 SLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTI--------------- 354 (434)
T ss_dssp TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE---------------
T ss_pred HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE---------------
Confidence 76543111 111 1345666555544443332 23445555566666666542 211111
Q ss_pred hhcCCCcceEEEEEcCC------------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCC
Q psy12791 298 SQWSGTSGMLSFYVNGG------------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365 (393)
Q Consensus 298 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 365 (393)
++.|.++++.+.+. ......+.+.+...++.+..|+. .
T Consensus 355 ---~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~ 404 (434)
T 2epj_A 355 ---NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL---------------------------E 404 (434)
T ss_dssp ---EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---------------------------S
T ss_pred ---EEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC---------------------------C
Confidence 12367889998531 23456666666555555544321 1
Q ss_pred eEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 366 LVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 366 ~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
. ++++...++++++.+.++|+++
T Consensus 405 ~--~~~~~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 405 A--VFTGLPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp C--EECCTTCSHHHHHHHHHHHHHH
T ss_pred c--EEEeccCCHHHHHHHHHHHHHH
Confidence 2 3444567777777777766654
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=179.37 Aligned_cols=214 Identities=13% Similarity=0.028 Sum_probs=140.3
Q ss_pred CCchHHHHHHHHHHHh-CCC---c---EEEeccHHHHH-HHHH----HhcCCCCeEEEcCCCccchHHHHHHhcccCCcE
Q psy12791 57 NNPTRRNLERCIASLE-EAK---H---GLCYSSGLGAV-TAVT----HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLE 124 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~-~~~---~---~i~~~~G~~al-~~~~----~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 124 (393)
|..+..+||+++++++ |.. + .+...+|+.++ .++. .+..|||+|++++|+|+. |..+++..|.+
T Consensus 85 p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~----y~~i~~~aG~~ 160 (420)
T 4h51_A 85 PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPN----HYGVVKAAGWK 160 (420)
T ss_dssp CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTH----HHHHHHHTTCC
T ss_pred CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchh----HHHHHHHcCCe
Confidence 4578899999999974 321 1 22234445555 3332 245799999999999984 77778888886
Q ss_pred -EEeeCCC-------CHHHHHhhc---CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 125 -VDFVDLR-------KIENLIKYI---KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 125 -v~~~~~~-------d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+..++.. |.+.+.+.+ .++++++++++||||||.+++ +++|.++|+++ ++++++|++|.++.+..
T Consensus 161 ~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~~~~~ 239 (420)
T 4h51_A 161 NICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGYASGS 239 (420)
T ss_dssp CEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSC
T ss_pred EEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhhccCC
Confidence 4333331 555555444 456788888999999999998 77888899999 99999999999865431
Q ss_pred C----C-------CCcCcEEEEcccccccCCCCceEEEEEecChHHH------HHHHHHHHhcCCCCCHHHHHHHHhccC
Q psy12791 191 S----L-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ------ARLKFLQNSMGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 191 ~----~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (393)
. . .....+++.||||.+ |++|+|+||+++..+... ..+.........+++...+..+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~ 318 (420)
T 4h51_A 240 LDTDAYAARLFARRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILS 318 (420)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred cccchHHHHhHHhhCceEEEEecccccc-ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhc
Confidence 1 0 113458999999999 699999999988633221 122222233344445555444443332
Q ss_pred C----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 254 T----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 254 ~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
. +...++++.+.++.+.+.|+..
T Consensus 319 d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~ 351 (420)
T 4h51_A 319 NNELRKEWEAELSAMAERIRTMRRTVYDELLRL 351 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2234445556666777777653
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=179.20 Aligned_cols=320 Identities=12% Similarity=0.007 Sum_probs=191.2
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCC---CccccCCCCchHHHHHHHHHHHhCCC-cEE-EeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQ---GFEYSRSNNPTRRNLERCIASLEEAK-HGL-CYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~---~~~y~~~~~~~~~~lr~~la~~~~~~-~~i-~~~~G~~al-~~~~ 91 (393)
.+++| +++ .+|++.+ +.+.+++.+++.. .+.+..++++...+|++.|+++++.. +.+ ++++|++++ .++.
T Consensus 51 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~ 130 (460)
T 3gju_A 51 RKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIK 130 (460)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHH
Confidence 45678 665 5777654 4555444332111 12233456778889999999997654 444 455566677 6665
Q ss_pred Hhc--------CCCCeEEEcCCCccchHHHHHHh---------cccCCcEEEeeC--C----CC------------HHHH
Q psy12791 92 HLL--------SAGDHIISGDDVYGGTYRYFAQV---------APKIGLEVDFVD--L----RK------------IENL 136 (393)
Q Consensus 92 ~~~--------~~gd~vl~~~~~y~~~~~~~~~~---------~~~~g~~v~~~~--~----~d------------~~~l 136 (393)
.+. .+++.|++.+++|++........ .......+..++ . +| ++++
T Consensus 131 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l 210 (460)
T 3gju_A 131 LIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKL 210 (460)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHH
Confidence 544 24689999999998643222111 111122333343 3 22 5788
Q ss_pred HhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCcCcEEEEc
Q psy12791 137 IKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWGVDIVLYS 202 (393)
Q Consensus 137 ~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~~di~~~S 202 (393)
++.+. +++++|+++.++|++|.+.+ +++|.++|++| |++||+||+|..+.. .... ....|++ +
T Consensus 211 e~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t 287 (460)
T 3gju_A 211 EEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--T 287 (460)
T ss_dssp HHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--E
T ss_pred HHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccchHhhcCCCCCee--e
Confidence 88775 45788888888888888776 99999999999 999999999986421 1111 1234555 6
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHHHH-------HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHH-
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKF- 272 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~- 272 (393)
+||.++ ..++|+||++++ +++++.+... ........++..+..+...++.+. ...++..++...+.+.
T Consensus 288 ~sK~l~-gG~~~lg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l 365 (460)
T 3gju_A 288 IAKGLT-SAYAPLSGVIVA-DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAEL 365 (460)
T ss_dssp ECGGGT-TTSSCCEEEEEE-HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred eehhhc-CCCCCeEEEEEC-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 789995 322799999998 8888887532 111223345666665555554221 1233444444444444
Q ss_pred ---HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH----------HHHHHHHHhcCccccccccCCccc
Q psy12791 273 ---LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA----------EETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 273 ---l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
+..++.+..+ ++.|.++++.+..+. +....+.+.+...++.+..++
T Consensus 366 ~~~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 424 (460)
T 3gju_A 366 AKAVGGHKNVGEV------------------RGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--- 424 (460)
T ss_dssp HHHHTTSTTEEEE------------------EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS---
T ss_pred HHHHhcCCCeEEE------------------eeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence 4444443322 223567888874221 123444554443344333221
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++++||++++..++++++.+.++|+++
T Consensus 425 -----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 452 (460)
T 3gju_A 425 -----------------------QGDILGFAPPLCLTREQADIVVSKTADA 452 (460)
T ss_dssp -----------------------SSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1479999999888888887777777654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=189.97 Aligned_cols=246 Identities=12% Similarity=0.051 Sum_probs=142.6
Q ss_pred CCCC-CCCC--CCCc-cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHHHh--c
Q psy12791 23 QWRS-QCVI--PPII-LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE-AKHGLCYSSGLGAV-TAVTHL--L 94 (393)
Q Consensus 23 ~~~~-~~~~--~p~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~~~--~ 94 (393)
.++| +++. ++++ .++.+.+++.+.+.....| .++++...++.+.+++.++ .++.+++++|++++ .++... +
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~ 136 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQY-AASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAF 136 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSS-CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4567 4554 5554 3445555443332222223 3456667777777777764 33455566667777 555441 3
Q ss_pred CCCCeEEEcCCCccchHHHHHHhc-------ccCCc------EEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCccc
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVA-------PKIGL------EVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMT 158 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~-------~~~g~------~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~ 158 (393)
..++.|++.+|+|++......... ...|+ .+..++..|++++++.+. +++++|+++..+|+||.
T Consensus 137 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~ 216 (453)
T 2cy8_A 137 TGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGV 216 (453)
T ss_dssp HCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHT
T ss_pred hCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCC
Confidence 345788888999986332111101 01243 355667679999998886 35677777666788999
Q ss_pred ccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 159 VFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 159 ~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+++ +++|.++|++| |++||+||+|+++..... .....|++ |+||+++ . |+|+||++++ +++++.+
T Consensus 217 ~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~v~~~-~~~~~~l 290 (453)
T 2cy8_A 217 TPVSDSFLREGAELARQY-GALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASA-G-GLPGGILGGR-EDVMGVL 290 (453)
T ss_dssp EECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGG-T-TSSCEEEEEC-HHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhh-C-CcceEEEech-HHHHHHh
Confidence 887 99999999999 999999999985421111 11234654 8899994 4 8999999998 7887766
Q ss_pred HH---H--HHhcCCCCCHHHHHHHHhccCC-H-HHHHHHHHHHHHHHHHHHhh
Q psy12791 230 KF---L--QNSMGVVPSPFDCWLVTRGLKT-L-PCRLKEHERGSIEVAKFLES 275 (393)
Q Consensus 230 ~~---~--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~ 275 (393)
.. . ........++..+..+...++. + +...++..++.+.+.+.|++
T Consensus 291 ~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (453)
T 2cy8_A 291 SRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNH 343 (453)
T ss_dssp SSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 43 1 1111223456665554444433 2 22345555556666666654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-22 Score=191.86 Aligned_cols=314 Identities=10% Similarity=0.071 Sum_probs=181.1
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCCCccc--cCCCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQGFEY--SRSNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~~~~y--~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~ 92 (393)
..++| +++ .++++.. +.+.+++.+++.....| ..++++...++++.|+++++.. ..+++++|++|+ .++..
T Consensus 44 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~ 123 (448)
T 3dod_A 44 KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123 (448)
T ss_dssp CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHH
Confidence 35667 444 4556543 44444443332222222 3345677889999999998644 455566667777 66655
Q ss_pred hcC----CC----CeEEEcCCCccchHHHHHHhcccCC------------cEEEeeCCCC----------------HHHH
Q psy12791 93 LLS----AG----DHIISGDDVYGGTYRYFAQVAPKIG------------LEVDFVDLRK----------------IENL 136 (393)
Q Consensus 93 ~~~----~g----d~vl~~~~~y~~~~~~~~~~~~~~g------------~~v~~~~~~d----------------~~~l 136 (393)
+.. +| |+|++.+++|++.... .....| ..+..++..+ ++++
T Consensus 124 ~~~~~~~~G~~~~~~vi~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 200 (448)
T 3dod_A 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTIG---AVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLREL 200 (448)
T ss_dssp HHHHHHHTTCTTCCEEEEEC--------------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCCCCccHH---HHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHH
Confidence 443 44 9999999999763211 111111 1233444332 7888
Q ss_pred HhhcC---CCCcEEEEecCC-CCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEc
Q psy12791 137 IKYIK---PNTKMVWIENPT-NPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYS 202 (393)
Q Consensus 137 ~~~l~---~~~~~v~l~~p~-nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S 202 (393)
++.+. +++++|+++.++ |++|.+.+ +++|.++|++| |++||+||+|..+.. ... .....|++ +
T Consensus 201 e~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t 277 (448)
T 3dod_A 201 AQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMFACEHENVQPDLM--A 277 (448)
T ss_dssp HHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred HHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchhhhhhcCCCCCEE--E
Confidence 88876 456788888887 99998876 99999999999 999999999985421 111 11234554 6
Q ss_pred ccccccCCCC-ceEEEEEecChHHHHHHHH-------HHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHH
Q psy12791 203 LTKYMNGHSD-VVMGATVTNDDSLQARLKF-------LQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKF 272 (393)
Q Consensus 203 ~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 272 (393)
+||.++ . | +|+||++++ +++++.+.. .........++..+..+...++.+. ...++..++.+.+.+.
T Consensus 278 ~sK~l~-~-G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~ 354 (448)
T 3dod_A 278 AGKGIT-G-GYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL 354 (448)
T ss_dssp ECGGGG-T-TSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred eccccc-C-CcCceEEEEEC-HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 889994 3 8 699999998 888887643 1111223345666665555554322 2344445555555555
Q ss_pred Hhh---CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH----------HHHHHHHhcCccccccccCCccc
Q psy12791 273 LES---HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE----------ETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 273 l~~---~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
|++ ++.+..+ ++.|.++++.+..+.. ....+.+.+...++.+.++
T Consensus 355 l~~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---- 412 (448)
T 3dod_A 355 LQDLHALPHVGDI------------------RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---- 412 (448)
T ss_dssp HHHHTTSTTEEEE------------------EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----
T ss_pred HHHHhcCCCeEEE------------------EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc----
Confidence 543 3322211 2235688888853211 0234444443334333211
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++||+++++..++++++.+.++|+++
T Consensus 413 ------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 439 (448)
T 3dod_A 413 ------------------------GDVIAFLPPLASTAEELSEMVAIMKQA 439 (448)
T ss_dssp ------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 378999999888888777777777654
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=184.58 Aligned_cols=212 Identities=17% Similarity=0.116 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhCCC-cEE-EeccHHHHH-HHHHHhc-------C-CCC------eEEEcCCCccchHHHHHHhcccCCc-
Q psy12791 62 RNLERCIASLEEAK-HGL-CYSSGLGAV-TAVTHLL-------S-AGD------HIISGDDVYGGTYRYFAQVAPKIGL- 123 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i-~~~~G~~al-~~~~~~~-------~-~gd------~vl~~~~~y~~~~~~~~~~~~~~g~- 123 (393)
.++++.+++++|.+ +.+ ++++|++++ .++..+. + +|| .|+++.++|++ +...++..|.
T Consensus 151 ~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s----~~~~~~~~g~g 226 (515)
T 2jis_A 151 EEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS----IQKGAAFLGLG 226 (515)
T ss_dssp HHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH----HHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH----HHHHHHHcCCC
Confidence 45677799999986 444 455556665 4444432 2 575 78999999986 4455566666
Q ss_pred --EEEeeCCC-----CHHHHHhhcCC------CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC
Q psy12791 124 --EVDFVDLR-----KIENLIKYIKP------NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK 190 (393)
Q Consensus 124 --~v~~~~~~-----d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~ 190 (393)
+++.+|.+ |++++++++.+ ++++|++++|+|+||.+.|+++|.++|+++ |+++++|++|+.+....
T Consensus 227 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~-g~~l~vD~a~~~~~~~~ 305 (515)
T 2jis_A 227 TDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH-GLWLHVDAAWGGSVLLS 305 (515)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH-TCEEEEEETTGGGGGGC
T ss_pred CCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc-CCeEEEehhhhhHHHhC
Confidence 88888875 78999998864 489999999999999999999999999999 99999999999876543
Q ss_pred C-----CC--CcCcEEEEcccccccCCCCceEEEEEecCh-HHHHHHHH-HHHhc-CC-------------------CCC
Q psy12791 191 S-----LP--WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-SLQARLKF-LQNSM-GV-------------------VPS 241 (393)
Q Consensus 191 ~-----~~--~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~~~~~~~~-~~~~~-~~-------------------~~~ 241 (393)
+ +. .++|+++.|+||+++++.| +|+++++++ ++.+.... ...+. +. ...
T Consensus 306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~ 383 (515)
T 2jis_A 306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD 383 (515)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred hhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence 2 22 2679999999999965555 899999866 45554210 11100 00 011
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 242 PFDCWLVTRGL--KTLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 242 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
....+++.+.+ +.+....++..++++.+.+.|++.+++.
T Consensus 384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 22222222222 2344566677778888889998877654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=185.43 Aligned_cols=317 Identities=12% Similarity=0.052 Sum_probs=194.0
Q ss_pred CCCC-CCC--CCCCcc-CCeeeeCCCCCCCCC-c-cccCCCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh
Q psy12791 23 QWRS-QCV--IPPIIL-STTFKQNTPGQPPQG-F-EYSRSNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL 93 (393)
Q Consensus 23 ~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~-~-~y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~ 93 (393)
+++| +++ .++++- ++.+.+++.+++... + .++.++++...+|+++|+++++.. ..+++++|++++ .++..+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a 155 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMA 155 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHH
Confidence 5678 555 567763 445554443322111 1 124556788899999999999754 455556667777 555544
Q ss_pred cC-------CC-CeEEEcCCCccchHHHHHHh----------cccCCcEEEeeCC-------CCHHHHHhhcC---CCCc
Q psy12791 94 LS-------AG-DHIISGDDVYGGTYRYFAQV----------APKIGLEVDFVDL-------RKIENLIKYIK---PNTK 145 (393)
Q Consensus 94 ~~-------~g-d~vl~~~~~y~~~~~~~~~~----------~~~~g~~v~~~~~-------~d~~~l~~~l~---~~~~ 145 (393)
.. +| +.|++.+++|++........ .......+..++. .|++++++.++ ++++
T Consensus 156 ~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~a 235 (457)
T 3tfu_A 156 LQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELA 235 (457)
T ss_dssp HHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEE
Confidence 43 55 48899999997643211111 1111112333333 26788888886 5688
Q ss_pred EEEEec-CCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCcCcEEEEcccccccCCCCce
Q psy12791 146 MVWIEN-PTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWGVDIVLYSLTKYMNGHSDVV 214 (393)
Q Consensus 146 ~v~l~~-p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~~di~~~S~sK~~~G~~G~r 214 (393)
+|+++. ++|++|.+++ +++|.++|+++ |++||+||+|..+.. .... ....|++ ||||.++ ...+|
T Consensus 236 avi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~-gG~~~ 311 (457)
T 3tfu_A 236 AVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALT-GGYLS 311 (457)
T ss_dssp EEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGG-TTSSC
T ss_pred EEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhh-CCCcc
Confidence 899988 9999999987 99999999999 999999999986421 1111 1235666 8899984 32269
Q ss_pred EEEEEecChHHHHHHHHH-----HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhC---CCcceEeC
Q psy12791 215 MGATVTNDDSLQARLKFL-----QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESH---PCVKGVLH 284 (393)
Q Consensus 215 ~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~---~~~~~v~~ 284 (393)
+||++++ +++++.+... ........++..+..+...++.+. ...++..+..+.+.+.|+++ +.+..+
T Consensus 312 lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-- 388 (457)
T 3tfu_A 312 LAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV-- 388 (457)
T ss_dssp CEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE--
T ss_pred eEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee--
Confidence 9999998 8888877421 111122345666655555443221 23455555666667777643 222211
Q ss_pred CCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCC
Q psy12791 285 PGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITD 364 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~ 364 (393)
++.|.+++|.+... .....+.+.+...++.+.. ..
T Consensus 389 ----------------r~~G~~~~i~l~~~-~~~~~~~~~l~~~Gv~v~~----------------------------~~ 423 (457)
T 3tfu_A 389 ----------------RVCGAIGVIECDRP-VDLAVATPAALDRGVWLRP----------------------------FR 423 (457)
T ss_dssp ----------------EECSSCEEEEESSC-CCHHHHHHHHHHTTEECCC----------------------------BT
T ss_pred ----------------ecCCeEEEEEECCc-ccHHHHHHHHHHCCeEEEe----------------------------cC
Confidence 22367888888532 1234454544433433321 03
Q ss_pred CeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 365 NLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 365 ~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
+++|+++++..++++++.+.++|+++.
T Consensus 424 ~~lRi~p~~~~t~eei~~~l~~L~~~l 450 (457)
T 3tfu_A 424 NLVYAMPPYICTPAEITQITSAMVEVA 450 (457)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 689999998888888888888777653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=189.23 Aligned_cols=313 Identities=13% Similarity=0.075 Sum_probs=189.9
Q ss_pred CCCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCc-EEEeccHHHHH-HHHHH--h
Q psy12791 22 DQWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKH-GLCYSSGLGAV-TAVTH--L 93 (393)
Q Consensus 22 ~~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~-~i~~~~G~~al-~~~~~--~ 93 (393)
.+++| +++. +|++. ++.+.+++.+.+.....|+ ++++...+|++.++++++..+ .+++++|++++ .++.. .
T Consensus 52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~ 130 (427)
T 3fq8_A 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFG-APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRA 130 (427)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCS-SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcC-CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 45677 5554 67764 5555555443332222233 367888999999999986444 44555556667 55522 2
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhccc-------------CC------cEEEeeCCCCHHHHHhhcCC---CCcEEEEec
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPK-------------IG------LEVDFVDLRKIENLIKYIKP---NTKMVWIEN 151 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~-------------~g------~~v~~~~~~d~~~l~~~l~~---~~~~v~l~~ 151 (393)
...+++|++.+++|++... ..... .| ..+..++.+|++++++.+.+ ++++|+++.
T Consensus 131 ~~~~~~vi~~~~~yhg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p 207 (427)
T 3fq8_A 131 YTGRDKIIKFEGCYHGHAD---MFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEP 207 (427)
T ss_dssp HHCCCEEEEEETCCCCSCG---GGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred hhCCCEEEEECCCcCCCCH---HHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcC
Confidence 2345789999999875321 11111 11 12566677789999988864 578888888
Q ss_pred CCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccC-----CCCCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 152 PTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQK-----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 152 p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~-----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
++|++|.+.+ +++|.++|++| |++||+||+|+++.... ......|+ .|+||.+ | +|+|+||++++
T Consensus 208 ~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~~~g~~~~~~~~~~~~di--~t~sK~~-~-~G~~~G~~~~~- 281 (427)
T 3fq8_A 208 IVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGFRIAYGGVQEKFGVTPDL--TTLGKII-G-GGLPVGAYGGK- 281 (427)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBTTTBTTHHHHHTTCCCSE--EEECGGG-G-TTSSCEEEEEC-
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCcchhhHhcCCCCCh--hhhhhhh-h-CCcceEEEEEc-
Confidence 8999999999 99999999999 99999999998541111 11123454 5788999 4 69999999997
Q ss_pred hHHHHHHHHHHH-hcCC--CCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcch
Q psy12791 223 DSLQARLKFLQN-SMGV--VPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNH 293 (393)
Q Consensus 223 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~ 293 (393)
+++++.+..... ..+. ..++..+..+...++.+ +...++..++.+.+.+.|++ ++....+
T Consensus 282 ~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------- 350 (427)
T 3fq8_A 282 REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG----------- 350 (427)
T ss_dssp HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-----------
T ss_pred HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-----------
Confidence 888876653211 1121 23566655544433211 22344555555555555543 2211111
Q ss_pred HHHhhhcCCCcceEEEEEcC------------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcC
Q psy12791 294 ELAKSQWSGTSGMLSFYVNG------------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361 (393)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g 361 (393)
++.+.++++.+.. +......+.+.+...++.+..++
T Consensus 351 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~------------------------- 398 (427)
T 3fq8_A 351 -------GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ------------------------- 398 (427)
T ss_dssp -------EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------------------------
T ss_pred -------EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-------------------------
Confidence 1235677777632 12234455555544444443321
Q ss_pred CCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 362 ITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 362 ~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..|++++...++++++.+.++|+++.
T Consensus 399 ----~~r~~~~~~~t~e~i~~~l~~l~~~l 424 (427)
T 3fq8_A 399 ----FEAGFTSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp ----TSCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ----CCCEEeeCcCCHHHHHHHHHHHHHHH
Confidence 11566777888888888888887653
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=180.15 Aligned_cols=282 Identities=14% Similarity=0.093 Sum_probs=188.2
Q ss_pred chHHHHHHHHHHHhCCC--cEEEe-ccH-HHHH-HHHHHhcCC--CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCY-SSG-LGAV-TAVTHLLSA--GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~-~~G-~~al-~~~~~~~~~--gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
...++.|+.+++++|++ +.|++ ++| +.++ .++..++.+ ||++++...++.+. .+...++..|..++.++.+
T Consensus 58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~ 135 (377)
T 3e77_A 58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKL 135 (377)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccC
Confidence 45678999999999986 35665 555 4457 777777765 89998877766553 3556778889988887764
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEEEEcccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIVLYSLTK 205 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~~~S~sK 205 (393)
++++++..++++|++|.+++..|.||.++|+ +++++ |+++++|.+++.+.. |++. ..++++.|.+|
T Consensus 136 ~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-----i~~~~-~~~~~vD~~q~~g~~--~id~~~~~~~~~s~~K 207 (377)
T 3e77_A 136 GSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-----IPDVK-GAVLVCDMSSNFLSK--PVDVSKFGVIFAGAQK 207 (377)
T ss_dssp SSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----CCCCT-TCCEEEECTTTTTSS--CCCGGGCSEEEEEGGG
T ss_pred CCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----hhccC-CCEEEEEcccccCCC--CCchhhcCEEEEeccc
Confidence 4566777788889999999999999999998 47788 999999999997654 4442 23478899999
Q ss_pred cccCCCCceEEEEEecChHHHHHHH----------HHH--HhcCCCCCHHHHHHHHhccC------CHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLK----------FLQ--NSMGVVPSPFDCWLVTRGLK------TLPCRLKEHERGSI 267 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 267 (393)
++ ||+| +|+++.+ +++.+++. ... .....+++....+.+..+++ .++.+.++..+..+
T Consensus 208 ~~-gp~G--~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~ 283 (377)
T 3e77_A 208 NV-GSAG--VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQ 283 (377)
T ss_dssp TT-SCTT--CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cc-CCCc--cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99 7999 8888887 44432211 111 01122333333332222222 24455566667778
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+.+.|++.+++. + .+. .+. ...+.++.|.+++ +.+....+++.+...++.+..|..
T Consensus 284 ~l~~~L~~~~g~~-~-~~~---~~~--------~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~------- 343 (377)
T 3e77_A 284 TIYEIIDNSQGFY-V-CPV---EPQ--------NRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR------- 343 (377)
T ss_dssp HHHHHHHTSTTSE-E-CCS---CGG--------GBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT-------
T ss_pred HHHHHHHhcCCce-e-cCC---CHH--------HcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC-------
Confidence 8888888777653 1 111 000 0113468999964 132224566665544554433210
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+.+|+|++.++++++++.+.++|+++.+
T Consensus 344 ------------------~~g~iRiS~~~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 344 ------------------SVGGIRASLYNAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp ------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 135699999999999999999999998753
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=187.91 Aligned_cols=312 Identities=15% Similarity=0.102 Sum_probs=188.4
Q ss_pred CCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhC-CCcEEEeccHHHHH-HHHHH--hc
Q psy12791 23 QWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEE-AKHGLCYSSGLGAV-TAVTH--LL 94 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~-~~~~i~~~~G~~al-~~~~~--~~ 94 (393)
.++| +++. ++++. ++.+.+++.+.+.....| .++.+...++++.++++++ .++.+++++|++++ .++.. .+
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~ 131 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGLTF-GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGY 131 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCC-SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4567 5554 56654 555655554432222223 3456778999999999984 44555666677777 55543 23
Q ss_pred CCCCeEEEcCCCccchHHHHHHhc----------ccCCc------EEEeeCCCCHHHHHhhcC---CCCcEEEEecCCC-
Q psy12791 95 SAGDHIISGDDVYGGTYRYFAQVA----------PKIGL------EVDFVDLRKIENLIKYIK---PNTKMVWIENPTN- 154 (393)
Q Consensus 95 ~~gd~vl~~~~~y~~~~~~~~~~~----------~~~g~------~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n- 154 (393)
.+++.|++.+|+|++......... ...|+ ++..++..|++++++.+. +++++|++ +|+|
T Consensus 132 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~-ep~~~ 210 (424)
T 2e7u_A 132 TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIF-EPVVG 210 (424)
T ss_dssp HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEE-CSSBC
T ss_pred hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEE-eCCCC
Confidence 456789999999986321110000 01232 466777779999998886 34555555 5554
Q ss_pred CcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHH
Q psy12791 155 PLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL 225 (393)
Q Consensus 155 ptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~ 225 (393)
+||.+++ +++|.++ ++| |++||+||+|+++..... .....|++ |+||++ | +|+|+||++++ +++
T Consensus 211 ~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l-~-~G~~~G~~~~~-~~~ 283 (424)
T 2e7u_A 211 NAGVLVPTEDFLKALHEA-KAY-GVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKIL-G-GGLPAAAYAGR-REI 283 (424)
T ss_dssp TTSCBCCCHHHHHHHHHG-GGG-TCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGG-G-TTSSCEEEEEC-HHH
T ss_pred CCCCcCCCHHHHHHHHHH-HHc-CCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhh-h-CCcceEEEEEc-HHH
Confidence 4898887 9999999 999 999999999996421111 11234654 889999 4 48999999998 787
Q ss_pred HHHHHHHHH-hc--CCCCCHHHHHHHHhccCCHH---HHHHHHHHHHHHHHHHHhhC----CCcceEeCCCCCCCcchHH
Q psy12791 226 QARLKFLQN-SM--GVVPSPFDCWLVTRGLKTLP---CRLKEHERGSIEVAKFLESH----PCVKGVLHPGLPSHPNHEL 295 (393)
Q Consensus 226 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~l~~~~~~~~ 295 (393)
++.+..... .. ....++..+..+...++.+. ...++..++.+.+.+.|++. +.+..+
T Consensus 284 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------- 350 (424)
T 2e7u_A 284 MEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV------------- 350 (424)
T ss_dssp HTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-------------
T ss_pred HhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE-------------
Confidence 776643111 11 11345666555554444332 24555566666666666542 221111
Q ss_pred HhhhcCCCcceEEEEEcC------------CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCC
Q psy12791 296 AKSQWSGTSGMLSFYVNG------------GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363 (393)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~ 363 (393)
.+.|.++++.+.+ +......+.+.+...++.+..++
T Consensus 351 -----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------- 398 (424)
T 2e7u_A 351 -----NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN--------------------------- 398 (424)
T ss_dssp -----EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS---------------------------
T ss_pred -----EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC---------------------------
Confidence 1235788888843 12345566666655555554432
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 364 DNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 364 ~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+| ++...++++++.+.++|+++
T Consensus 399 ~~~~~--~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 399 FEAAF--LSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp SSCEE--CCTTCCHHHHHHHHHHHHHH
T ss_pred CCceE--eeccCCHHHHHHHHHHHHHh
Confidence 11244 45678888888888888754
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=181.95 Aligned_cols=287 Identities=13% Similarity=0.116 Sum_probs=190.2
Q ss_pred CchHHHHHHHH----HHHhCCC-----------cEEEeccHHHHH-HHHHHhc-------------------CCCCeEEE
Q psy12791 58 NPTRRNLERCI----ASLEEAK-----------HGLCYSSGLGAV-TAVTHLL-------------------SAGDHIIS 102 (393)
Q Consensus 58 ~~~~~~lr~~l----a~~~~~~-----------~~i~~~~G~~al-~~~~~~~-------------------~~gd~vl~ 102 (393)
.|...++++.+ ++++|.+ ..+++++|++++ .++.+.. .+++.|++
T Consensus 108 ~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~ 187 (475)
T 3k40_A 108 SPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYC 187 (475)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEE
Confidence 57777777765 6677776 357777778885 4444321 13468999
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC----CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHHHhC
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR----KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVVKQH 172 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 172 (393)
+..+|.+ +.+.++..|++++.+|.+ |++++++++.++ +.+|++++++|+||.+.|+++|.++|+++
T Consensus 188 s~~~H~s----~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~ 263 (475)
T 3k40_A 188 SDQAHSS----VERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH 263 (475)
T ss_dssp ETTSCHH----HHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred CCCchHH----HHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence 9999986 455667789999999985 899999988654 56788899999999999999999999999
Q ss_pred CCcEEEEeCccCcccccCC----CC---CcCcEEEEcccccccCCCCceEEEEEecChHHH-HHHHHHHHhcCC------
Q psy12791 173 PDILLVLDNTFLTAYYQKS----LP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMGV------ 238 (393)
Q Consensus 173 ~~~~livDea~~~~~~~~~----~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~-~~~~~~~~~~~~------ 238 (393)
|+++++|++|+.+....+ .. ..+|.++.|+||+++++.| +|+++.+++... +.+.....+...
T Consensus 264 -~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 340 (475)
T 3k40_A 264 -NLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSA 340 (475)
T ss_dssp -TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGGC-------------------
T ss_pred -CCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHHHHHHhcCCccccCCCcCCCC
Confidence 999999999987543211 11 1369999999999976777 788887766543 222211111000
Q ss_pred --------CC----CHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 239 --------VP----SPFDCWLVTRG--LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 239 --------~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
.. .....+.+++. .+.+...+++..++++.+.+.|++.++++.+ .+. ..
T Consensus 341 ~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~-~~~----------------~~ 403 (475)
T 3k40_A 341 PDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA-AEI----------------NM 403 (475)
T ss_dssp --------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES-SCC----------------BT
T ss_pred CCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe-cCC----------------ce
Confidence 00 12222333222 2345667777888889999999988776522 111 14
Q ss_pred ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADL 383 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l 383 (393)
+++.|.+++.......+.+.+...+..... +... ....++|++++.. +++++++.+
T Consensus 404 ~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~---------~~~~--------------~g~~~lR~~~~~~~tt~~di~~~ 460 (475)
T 3k40_A 404 GLVCFRLKGSNERNEALLKRINGRGHIHLV---------PAKI--------------KDVYFLRMAICSRFTQSEDMEYS 460 (475)
T ss_dssp TEEEEEESSCHHHHHHHHHHHHHHTSCBCE---------EEEE--------------TTEEEEEEECCCTTCCHHHHHHH
T ss_pred EEEEEEeCCchHHHHHHHHHHHhCCcEEEE---------eeEE--------------CCEEEEEEEeCCCCCCHHHHHHH
Confidence 688898865555667777776543221100 0000 0146899998754 578888888
Q ss_pred HHHHHHhh
Q psy12791 384 DQALRKAC 391 (393)
Q Consensus 384 ~~al~~~~ 391 (393)
.++|+++.
T Consensus 461 ~~~i~~~~ 468 (475)
T 3k40_A 461 WKEVSAAA 468 (475)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=186.26 Aligned_cols=316 Identities=12% Similarity=0.087 Sum_probs=186.4
Q ss_pred CCCCC-CCCC--CCCcc-CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHHh--
Q psy12791 22 DQWRS-QCVI--PPIIL-STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTHL-- 93 (393)
Q Consensus 22 ~~~~~-~~~~--~p~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~~-- 93 (393)
..++| +++. ++++. ++.+.+++.+.+.....| .|+++...+|+++++++++.. ..+++++|++++ .++...
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~ 131 (429)
T 4e77_A 53 KAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF-GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARG 131 (429)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC-SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc-CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHH
Confidence 45677 5544 56653 455555544433332222 256788999999999998634 455566667777 555422
Q ss_pred cCCCCeEEEcCCCccchHHHHH----------HhcccCC------cEEEeeCCCCHHHHHhhcC---CCCcEEEEecCCC
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFA----------QVAPKIG------LEVDFVDLRKIENLIKYIK---PNTKMVWIENPTN 154 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~----------~~~~~~g------~~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n 154 (393)
...++.|++.++.|++...... ......| ..+..++.+|++++++.+. +++++|+++..++
T Consensus 132 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~ 211 (429)
T 4e77_A 132 YTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAG 211 (429)
T ss_dssp HHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBC
T ss_pred hhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccC
Confidence 2456789999999887432100 0001111 2456667778999998886 3456666555555
Q ss_pred CcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHH
Q psy12791 155 PLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL 225 (393)
Q Consensus 155 ptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~ 225 (393)
++|.+.+ +++|.++|+++ |++||+||+|.++..... .....|++ |+||.+ | +|+|+||++++ +++
T Consensus 212 ~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~-~-~G~~~G~~~~~-~~~ 285 (429)
T 4e77_A 212 NMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKII-G-GGMPVGAFGGR-REV 285 (429)
T ss_dssp TTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGG-G-TTSCCEEEEEC-HHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcccCcchHHHhcCCCCCee--eecccc-c-CCCCeEEEEEC-HHH
Confidence 6677777 99999999999 999999999995411111 11234654 889999 4 58999999997 888
Q ss_pred HHHHHHHH---HhcCCCCCHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHH
Q psy12791 226 QARLKFLQ---NSMGVVPSPFDCWLVTRGLKTL--PCRLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELA 296 (393)
Q Consensus 226 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~ 296 (393)
++.+.... .......++..+..+...++.+ +...++..++.+.+.+.|++ ++.+..+
T Consensus 286 ~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------- 351 (429)
T 4e77_A 286 MNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV-------------- 351 (429)
T ss_dssp HTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE--------------
T ss_pred HHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE--------------
Confidence 77665321 1112234566655444443211 22344455555555555543 2221111
Q ss_pred hhhcCCCcceEEEEEcCC-------------HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCC
Q psy12791 297 KSQWSGTSGMLSFYVNGG-------------AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363 (393)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~ 363 (393)
++.|.++++.+.+. ......+.+.+...++.+..++
T Consensus 352 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------------------------- 400 (429)
T 4e77_A 352 ----NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA--------------------------- 400 (429)
T ss_dssp ----EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST---------------------------
T ss_pred ----EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC---------------------------
Confidence 22367788887532 1334556666554455544332
Q ss_pred CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 364 DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 364 ~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
... ++++...++++++.+.++|+++.
T Consensus 401 ~~~--~~~~~~~t~e~i~~~l~~l~~~l 426 (429)
T 4e77_A 401 FEA--GFMSLAHSNEDIQKTVNAARRCF 426 (429)
T ss_dssp TSC--EECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCC--EEEeccCCHHHHHHHHHHHHHHH
Confidence 122 44556778888888888887664
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=181.67 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=192.8
Q ss_pred CCchHHHHHHHH----HHHhCCCc------------EEEeccHHHHH-HHHHHhc-------------------CCCCeE
Q psy12791 57 NNPTRRNLERCI----ASLEEAKH------------GLCYSSGLGAV-TAVTHLL-------------------SAGDHI 100 (393)
Q Consensus 57 ~~~~~~~lr~~l----a~~~~~~~------------~i~~~~G~~al-~~~~~~~-------------------~~gd~v 100 (393)
..|...++++.+ ++++|.++ .+++++|+.++ .++.+.. .+++.|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 357777787766 55577652 36777778885 5444321 256789
Q ss_pred EEcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 101 ISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 101 l~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
+++..+|.+ +.+.++..|.+++.+|.+ |+++|++++.++ +.+|++++++|+||.+.|+++|.++|
T Consensus 192 ~~s~~~H~s----~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la 267 (481)
T 4e1o_A 192 YASDQAHSS----VEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPIC 267 (481)
T ss_dssp EEETTSCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred EEcCcchHH----HHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHH
Confidence 999999986 455566789999999975 899999998653 67788899999999999999999999
Q ss_pred HhCCCcEEEEeCccCcccccCC----CCC---cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH-HHHhc-----
Q psy12791 170 KQHPDILLVLDNTFLTAYYQKS----LPW---GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF-LQNSM----- 236 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~~~----~~~---~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~-~~~~~----- 236 (393)
+++ |+++++|++|+.+....+ ... .+|.++.++||+++++.| .|+++.+++........ ...+.
T Consensus 268 ~~~-~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 268 ARE-GLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHH-TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHc-CCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 999 999999999987543211 111 359999999999977777 77777776665432110 00110
Q ss_pred -------------CCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 237 -------------GVVPSPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 237 -------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
+........+.+++ +.+.+..++++..++++.+.+.|++.|+++.+..+.
T Consensus 345 ~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~--------------- 409 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH--------------- 409 (481)
T ss_dssp TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCC---------------
T ss_pred CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc---------------
Confidence 00112233333333 234466677888888999999999887754221111
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHH
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLI 380 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i 380 (393)
.++++|.+++.......+.+.+...+..... +... ....++|++++.. ++++++
T Consensus 410 --~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---------~~~~--------------~g~~~lR~~~~~~~tt~~di 464 (481)
T 4e1o_A 410 --LGLVVFRLKGPNSLTENVLKEIAKAGRLFLI---------PATI--------------QDKLIIRFTVTSQFTTRDDI 464 (481)
T ss_dssp --SSEEEEEESSCHHHHHHHHHHHHHHCSSBCE---------EEEE--------------TTEEEEEEECCCTTCCHHHH
T ss_pred --eeEEEEEeCCchHHHHHHHHHHHhCCeEEEE---------eeEE--------------CCEEEEEEEeCCCCCCHHHH
Confidence 3688998865555667777776543211100 0000 0146899998755 578888
Q ss_pred HHHHHHHHHhh
Q psy12791 381 ADLDQALRKAC 391 (393)
Q Consensus 381 ~~l~~al~~~~ 391 (393)
+.+.++|+++.
T Consensus 465 ~~~~~~i~~~~ 475 (481)
T 4e1o_A 465 LRDWNLIRDAA 475 (481)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=185.81 Aligned_cols=320 Identities=14% Similarity=0.075 Sum_probs=194.3
Q ss_pred CCCCC-CCC--CCCCcc-CCeeeeCCCCCCCCC-cccc-CCCCchHHHHHHHHHHHhCC--CcEEEeccHHHHH-HHHHH
Q psy12791 22 DQWRS-QCV--IPPIIL-STTFKQNTPGQPPQG-FEYS-RSNNPTRRNLERCIASLEEA--KHGLCYSSGLGAV-TAVTH 92 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~-~~~~~~~~~~~~~~~-~~y~-~~~~~~~~~lr~~la~~~~~--~~~i~~~~G~~al-~~~~~ 92 (393)
..++| +++ .++++. ++.+.+++.+++... +.++ .++++...+|++.|+++++. +..+++++|++|+ .++..
T Consensus 54 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~ 133 (476)
T 3i5t_A 54 RRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRF 133 (476)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHH
Confidence 35677 666 677764 445555443332211 2222 45678889999999998863 3556666677777 55554
Q ss_pred hc--------CCCCeEEEcCCCccchHHHHHHhcc-----------cCCcEEEeeCC-----C-C--------HHHHHhh
Q psy12791 93 LL--------SAGDHIISGDDVYGGTYRYFAQVAP-----------KIGLEVDFVDL-----R-K--------IENLIKY 139 (393)
Q Consensus 93 ~~--------~~gd~vl~~~~~y~~~~~~~~~~~~-----------~~g~~v~~~~~-----~-d--------~~~l~~~ 139 (393)
+. ..++.|++.++.|++.......... ..+...+..|. + + ++++++.
T Consensus 134 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~ 213 (476)
T 3i5t_A 134 SEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDR 213 (476)
T ss_dssp HHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHH
Confidence 43 3357899999999864322111100 11223333332 1 1 6788887
Q ss_pred cC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cC------CCCCcCcEEEEccc
Q psy12791 140 IK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QK------SLPWGVDIVLYSLT 204 (393)
Q Consensus 140 l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~------~~~~~~di~~~S~s 204 (393)
+. +++++|+++.++|++|.+.+ +++|.++|+++ |++||+||+|..+.. .. ......|++ +++
T Consensus 214 i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~-gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~--t~s 290 (476)
T 3i5t_A 214 IESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH-DILYISDEVVTGFGRCGEWFASEKVFGVVPDII--TFA 290 (476)
T ss_dssp HHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEE--EEC
T ss_pred HHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccccCceeeecccCCCcchh--hhh
Confidence 75 45788998999999998665 99999999999 999999999986421 11 122235666 578
Q ss_pred ccccCCCC-ceEEEEEecChHHHHHHHHH-------HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh
Q psy12791 205 KYMNGHSD-VVMGATVTNDDSLQARLKFL-------QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 205 K~~~G~~G-~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~ 274 (393)
|.++| | +|+|+++++ +++++.+... ........++..+..+...++.+. ...++..++.+.+.+.|+
T Consensus 291 K~l~~--G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~ 367 (476)
T 3i5t_A 291 KGVTS--GYVPLGGLAIS-EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALA 367 (476)
T ss_dssp GGGGT--TSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhhcC--CCcCeEEEEEC-HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99953 8 899999997 8888876532 111223446777666665554332 235555666677777776
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH----------HHHHHHHhcCccccccccCCccccccCc
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE----------ETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+... |. +...++.|.++.+.+..+.. ....+.+.+...++.+..
T Consensus 368 ~l~~~-----~~----------v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~---------- 422 (476)
T 3i5t_A 368 SLRDL-----PG----------VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRP---------- 422 (476)
T ss_dssp TTTTS-----TT----------EEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEE----------
T ss_pred HHhcC-----CC----------eEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEe----------
Confidence 43211 10 01112346778888753211 244455544433333211
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
. .+++||++++..++++++.+.++|+++
T Consensus 423 ---------------~---g~~iRi~p~l~~t~e~i~~~l~~l~~~ 450 (476)
T 3i5t_A 423 ---------------L---GDLCVISPPLIISRAQIDEMVAIMRQA 450 (476)
T ss_dssp ---------------E---TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ---------------c---CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0 278999988888877777777766654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-20 Score=186.97 Aligned_cols=213 Identities=13% Similarity=0.051 Sum_probs=151.8
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.....++++.+++++|.++.+++++|+++ + .++.+++++||+|+++.++|.+.+ ..+...|+++++++.+
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~----~~~~~~G~~~v~v~~~~~~ 278 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE----QGLMLTGAKPVYMVPSRNR 278 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHH----HHHHHHCCEEEEECCCBCT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHH----HHHHHcCCEEEEEeCCCCc
Confidence 456778999999999999988999999865 7 777888999999999999998743 3355679999988752
Q ss_pred ------------CHHHHHhhcCC--CCc--------EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 132 ------------KIENLIKYIKP--NTK--------MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 132 ------------d~~~l~~~l~~--~~~--------~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
|++++++++.+ +++ ++++++| ||+|.+.|+++|.++|+++ ++++++|++|+.....
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~-~~~livDeA~~~~~~~ 356 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT-SDRLHFDEAWYGYARF 356 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT-CSEEEEECTTCTTGGG
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc-CCEEEEECcCchhccc
Confidence 78889888853 344 8999998 6999999999999999999 9999999999853211
Q ss_pred -------CCCCCc--CcE------EEEcccccccCCCCceEEEEEecCh--HH-HHHHHHHHHhc-CCCCCHHHHH---H
Q psy12791 190 -------KSLPWG--VDI------VLYSLTKYMNGHSDVVMGATVTNDD--SL-QARLKFLQNSM-GVVPSPFDCW---L 247 (393)
Q Consensus 190 -------~~~~~~--~di------~~~S~sK~~~G~~G~r~G~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~---~ 247 (393)
.++ .+ +|+ ++.|+||+++|+.+ +|+++.+++ .+ ...+....... ...++..... .
T Consensus 357 ~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~a 433 (755)
T 2vyc_A 357 NPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQ--ASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDV 433 (755)
T ss_dssp CGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred CcccCCcchh-cCCcCCccCCCeEEEECccccccCcCC--eeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 122 34 565 99999999876655 788877643 12 12333222222 2233332211 1
Q ss_pred HHhccCC--HHHHHHHHHHHHHHHHHHHhhCCC
Q psy12791 248 VTRGLKT--LPCRLKEHERGSIEVAKFLESHPC 278 (393)
Q Consensus 248 ~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~ 278 (393)
+.+.++. ...++++..++.+.+++.|+++++
T Consensus 434 A~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 434 AVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2222222 345677777778888888876544
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=181.32 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=164.5
Q ss_pred HHHHHHHhCCCc----E-EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH-H--H-HhcccCCc--EEEeeCCC-
Q psy12791 65 ERCIASLEEAKH----G-LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY-F--A-QVAPKIGL--EVDFVDLR- 131 (393)
Q Consensus 65 r~~la~~~~~~~----~-i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~-~--~-~~~~~~g~--~v~~~~~~- 131 (393)
++.+++++|.+. . ++++||+.++ .++.+++++||+|+++++.|++.+.. + . ..+...|. +++.++.+
T Consensus 106 ~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~ 185 (490)
T 2a7v_A 106 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP 185 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT
T ss_pred HHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc
Confidence 389999999885 3 4456999997 78888999999999999998653210 0 0 01223443 33444322
Q ss_pred -----CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc-----cCCCCCcCcEEE
Q psy12791 132 -----KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY-----QKSLPWGVDIVL 200 (393)
Q Consensus 132 -----d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~-----~~~~~~~~di~~ 200 (393)
|++++++.+. .++++|+++.++||+ ..|+++|.++|+++ |+++++|+++..+.. ..++. ++|+++
T Consensus 186 ~~~~iD~d~le~~l~~~~~klIi~~~s~~~~--~~dl~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~ 261 (490)
T 2a7v_A 186 KTGLIDYNQLALTARLFRPRLIIAGTSAYAR--LIDYARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFK-HADIVT 261 (490)
T ss_dssp TTCSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCCHHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGG-TCSEEE
T ss_pred ccCCcCHHHHHHHHhhcCCcEEEEcCCCCCC--cccHHHHHHHHHHc-CCEEEEccccccccccCCcCCCCCC-CCCEEE
Confidence 8999999885 368999999888874 67999999999999 999999999875322 22332 689999
Q ss_pred EcccccccCCCCceEEEEEecCh--------------HHHHHHHHHHHhc-CCCCCHHH-HHHH--Hh-cc-CCHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDD--------------SLQARLKFLQNSM-GVVPSPFD-CWLV--TR-GL-KTLPCRLK 260 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~-~~~~--~~-~~-~~~~~~~~ 260 (393)
.|+||+++|+ |+|+++++++ ++.++++...... .+.+.... +.++ .. .. +.+..+.+
T Consensus 262 ~S~hK~l~Gp---~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~ 338 (490)
T 2a7v_A 262 TTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 338 (490)
T ss_dssp EESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ECCcccCccc---cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999998654 5799998853 3556665443321 11222221 1111 11 11 23455677
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCccccccccCCc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLIFRCAESLGGI 337 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~g~~ 337 (393)
+..++++.+.+.|.+. ++. +..++ .-..++++.+.+ +..+...+++. .++.++.+..
T Consensus 339 ~~~~na~~L~~~L~~~-G~~-v~~~~---------------t~t~lv~vdl~~~g~~~~~~~~~L~~---~GI~v~~~~~ 398 (490)
T 2a7v_A 339 QVLKNARAMADALLER-GYS-LVSGG---------------TDNHLVLVDLRPKGLDGARAERVLEL---VSITANKNTC 398 (490)
T ss_dssp HHHHHHHHHHHHHHHT-TCE-EGGGS---------------CSSSEEEEECTTTTCCHHHHHHHHHH---TTEECEEECC
T ss_pred HHHHHHHHHHHHHHHc-CcE-EecCC---------------CCCeEEEEEeCCCCCCHHHHHHHHHh---CCeEEecCcc
Confidence 7788999999999874 332 21111 013578888742 33444444443 3444443211
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecC----CChHHHHHHHHHHHHHh
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV----EGYTDLIADLDQALRKA 390 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~----~~~~~~i~~l~~al~~~ 390 (393)
..- ..| ..++.|||+... ..++++++.+.+++.++
T Consensus 399 p~d-~~p-----------------~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~ 437 (490)
T 2a7v_A 399 PGD-RSA-----------------ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp TTC-CCS-----------------SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCC-CCC-----------------CCCCceEecccccccCCCCHHHHHHHHHHHHHH
Confidence 100 001 125789997743 34566677777766544
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=176.78 Aligned_cols=279 Identities=11% Similarity=0.058 Sum_probs=177.7
Q ss_pred CchHHHHHHHHHHHhCCC--cEEEe-c-cHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 58 NPTRRNLERCIASLEEAK--HGLCY-S-SGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~~i~~-~-~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
....++.|+.+|+++|++ +.|++ + +|+.++ .++..++++||++++..-++.+. .+...++..| ++..++.+
T Consensus 71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~ 147 (386)
T 3qm2_A 71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKI 147 (386)
T ss_dssp --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCc
Confidence 356788999999999986 35555 4 556668 77788889999987655544433 3455677888 88877654
Q ss_pred -------CHHHHHhhcCCCCcEEEEecCCCCcccc-cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEEEEc
Q psy12791 132 -------KIENLIKYIKPNTKMVWIENPTNPLMTV-FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIVLYS 202 (393)
Q Consensus 132 -------d~~~l~~~l~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~~~S 202 (393)
++++++..++++|++|.+++..|.||.+ .|+++|. + |+++++|.+++.+.. |++. ..++++.|
T Consensus 148 ~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~-----~-g~~~~vDa~qs~g~~--pidv~~~~~~~~s 219 (386)
T 3qm2_A 148 TVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG-----P-EVVVTADFSSTILSA--PLDVSRYGVIYAG 219 (386)
T ss_dssp EETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC-----T-TCCEEEECTTTTTSS--CCCGGGCSEEEEE
T ss_pred ccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc-----C-CCEEEEEcccccCCC--CCCccccCEEEEe
Confidence 3567777888899999999999999996 8888875 7 999999999997654 4442 23578899
Q ss_pred ccccccCCCCceEEEEEecChHHHHHHH----------HHH---HhcCCCCCHHHHHHHHhccCC------HHHHHHHHH
Q psy12791 203 LTKYMNGHSDVVMGATVTNDDSLQARLK----------FLQ---NSMGVVPSPFDCWLVTRGLKT------LPCRLKEHE 263 (393)
Q Consensus 203 ~sK~~~G~~G~r~G~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 263 (393)
.+|++ ||+| +|+++.+ +++.+++. ... ...+ +++....+.+..+++. +....++..
T Consensus 220 ~hK~l-GP~G--~g~l~v~-~~~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~ 294 (386)
T 3qm2_A 220 AQKNI-GPAG--LTLVIVR-EDLLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQ 294 (386)
T ss_dssp TTTTT-CCTT--EEEEEEE-GGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccc-CCCc--cEEEEEC-HHHHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999 7999 9999987 44422111 010 0112 1111111112222221 333444555
Q ss_pred HHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccC
Q psy12791 264 RGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 264 ~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
+..+.+.+.|++.+ + +..+. . +. .....++.|.+++.... ..++..|...++.+..|..
T Consensus 295 ~l~~~l~~~l~~~~-~--~~~~~-~--~~--------~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~------ 353 (386)
T 3qm2_A 295 QKAELLYGVIDNSD-F--YRNDV-A--QA--------NRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHR------ 353 (386)
T ss_dssp HHHHHHHHHHHTCS-S--EECCB-C--GG--------GBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCT------
T ss_pred HHHHHHHHHHHHCC-C--cccCC-C--HH--------HcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCC------
Confidence 56667777776552 1 11110 0 00 11236899999531112 4555556554555433311
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+.+|+|++.++|+++|+++.++|+++.+
T Consensus 354 -------------------~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 354 -------------------VVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp -------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 024599999999999999999999998754
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=178.87 Aligned_cols=317 Identities=13% Similarity=0.069 Sum_probs=194.1
Q ss_pred CCCCC-CCC--CCCCccC-CeeeeCCCCCCCC---CccccCCCCchHHHHHHHHHHHhCCC-c-EEEeccHHHHH-HHHH
Q psy12791 22 DQWRS-QCV--IPPIILS-TTFKQNTPGQPPQ---GFEYSRSNNPTRRNLERCIASLEEAK-H-GLCYSSGLGAV-TAVT 91 (393)
Q Consensus 22 ~~~~~-~~~--~~p~~~~-~~~~~~~~~~~~~---~~~y~~~~~~~~~~lr~~la~~~~~~-~-~i~~~~G~~al-~~~~ 91 (393)
.+++| +++ .++++.. +.+.+++.+++.. .+.+..++++...+|+++|+++++.. + .++.++|++++ .++.
T Consensus 55 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik 134 (472)
T 3hmu_A 55 EEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIR 134 (472)
T ss_dssp CEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Confidence 45778 666 6788743 4555544333211 12233456788899999999998754 4 55556667777 5555
Q ss_pred HhcC--------CCCeEEEcCCCccchHHHHHHh---------cccCCcEEEeeCCC---------C--------HHHHH
Q psy12791 92 HLLS--------AGDHIISGDDVYGGTYRYFAQV---------APKIGLEVDFVDLR---------K--------IENLI 137 (393)
Q Consensus 92 ~~~~--------~gd~vl~~~~~y~~~~~~~~~~---------~~~~g~~v~~~~~~---------d--------~~~l~ 137 (393)
.+.. ++++|++.+++|++........ .. ....+..++.. | +++++
T Consensus 135 ~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 135 MVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELE 213 (472)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHH
Confidence 4432 4678999999998643211111 11 11123334321 1 67788
Q ss_pred hhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCC-----CCCcCcEEEEcc
Q psy12791 138 KYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKS-----LPWGVDIVLYSL 203 (393)
Q Consensus 138 ~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~-----~~~~~di~~~S~ 203 (393)
+.+. +++++|+++.++|++|.+.+ +++|.++|+++ |++||+||+|..+.. ... .....|++ ++
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~--t~ 290 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-DILLIADEVICGFGRTGNWFGTQTMGIRPHIM--TI 290 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EE
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccCCcccCccchhHHhCCCCcee--ee
Confidence 7775 45778888888889999887 99999999999 999999999986421 111 11235666 57
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHH--HHhcCCCCCHHHHHHHHhccCCHH--HHHHHHH-HHHHHHHHHHhhC--
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFL--QNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHE-RGSIEVAKFLESH-- 276 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~l~~~-- 276 (393)
+|.++ ..|+|+||++++ +++++.+... ........++..+..+...++.+. ...++.. ++...+.+.|+.+
T Consensus 291 sK~l~-gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 368 (472)
T 3hmu_A 291 AKGLS-SGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTD 368 (472)
T ss_dssp CGGGT-TTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGG
T ss_pred chhhh-cCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89994 556899999997 8888877211 111122345666666655554332 2344555 5556666666543
Q ss_pred -CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC-----------HHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 277 -PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-----------AEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 277 -~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
+.+..+ ++.|.++.|.+..+ ......+.+.+...++.+..+
T Consensus 369 ~~~v~~v------------------r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--------- 421 (472)
T 3hmu_A 369 HPLVGEA------------------KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV--------- 421 (472)
T ss_dssp STTEEEE------------------EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE---------
T ss_pred CCCeEEE------------------EecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec---------
Confidence 222211 23467888888432 122444555444333332210
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.++|||++.+..++++++.+.++|+++
T Consensus 422 -------------------g~~iRi~p~~~~t~e~i~~~l~~l~~~ 448 (472)
T 3hmu_A 422 -------------------GDRMIISPPLVITPAEIDEMFVRIRKS 448 (472)
T ss_dssp -------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 278999999888888888777777654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=178.02 Aligned_cols=296 Identities=16% Similarity=0.059 Sum_probs=174.0
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCC-----C----CeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSA-----G----DHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~-----g----d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
.+...+||+++|++++.++.+++++|++++ .++..+.++ | |+|++. +.|..++ .......|..+..
T Consensus 73 ~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~---~~~~~~~~~~~~~ 148 (467)
T 2oqx_A 73 SRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTT---QGHSQINGCTVRN 148 (467)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHH---HHHHHHTTCEEEE
T ss_pred CchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccc---hhhhhccCcceee
Confidence 567889999999999987777778888777 777766777 8 997776 4554432 2222334444432
Q ss_pred e------C------C---CCHHHHHhhcC----CCCcEEEEecCCCCc-ccccC---HHHHHHHHHhCCCcEEEEeCccC
Q psy12791 128 V------D------L---RKIENLIKYIK----PNTKMVWIENPTNPL-MTVFD---VKAISAVVKQHPDILLVLDNTFL 184 (393)
Q Consensus 128 ~------~------~---~d~~~l~~~l~----~~~~~v~l~~p~npt-G~~~~---~~~l~~l~~~~~~~~livDea~~ 184 (393)
. + . .|+++++++++ +++++|++++|+||+ |.+++ +++|.++|++| |++||+|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~D~a~~ 227 (467)
T 2oqx_A 149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARF 227 (467)
T ss_dssp CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTH
T ss_pred ccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhh
Confidence 1 1 1 17899999887 379999999999998 88776 77999999999 99999997665
Q ss_pred c-cc--------ccCCCC---------CcCcEEEEcccccccCCCCceEEEEEecCh---HHHHHHHHHHHhcC-----C
Q psy12791 185 T-AY--------YQKSLP---------WGVDIVLYSLTKYMNGHSDVVMGATVTNDD---SLQARLKFLQNSMG-----V 238 (393)
Q Consensus 185 ~-~~--------~~~~~~---------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~---~~~~~~~~~~~~~~-----~ 238 (393)
. .. ...... ...|+++.|+||++ |++ .+|+++++++ +...+++......+ .
T Consensus 228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~-g~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (467)
T 2oqx_A 228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA-MVP--MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 (467)
T ss_dssp HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT-CCS--SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred hhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc-CCC--CceEEEecChhHHHHHHHHHHhhhccCCccccc
Confidence 4 11 011111 13678899999999 565 1488888744 34444433321111 1
Q ss_pred CCCHHHHHHHHhccC-CH-HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc----
Q psy12791 239 VPSPFDCWLVTRGLK-TL-PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN---- 312 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 312 (393)
.........+...++ .+ ...+++..++.+.+.+.|++. ++..+ |. .+.++++.+.
T Consensus 305 ~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~----------------~~~~~~~~~~~~~~ 365 (467)
T 2oqx_A 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ--QA----------------GGHAAFVDAGKLLP 365 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE--EE----------------CSSCEEEEHHHHST
T ss_pred chhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee--cC----------------CceEEEEechhhcc
Confidence 111111111111111 11 123445566777888888765 43322 22 1345677662
Q ss_pred C-CHHH--HHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCC-ChHHHHHHHHHHH
Q psy12791 313 G-GAEE--TRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVE-GYTDLIADLDQAL 387 (393)
Q Consensus 313 ~-~~~~--~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~-~~~~~i~~l~~al 387 (393)
+ +.++ ...+.+.| ...++.+..++.+.....+. + .. ......++||++++.. .++++++.+.++|
T Consensus 366 ~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~---~-g~------~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l 435 (467)
T 2oqx_A 366 HIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK---T-GK------QLPCPAELLRLTIPRATYTQTHMDFIIEAF 435 (467)
T ss_dssp TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT---T-CS------BCCCSCCEEEECCCTTTSCHHHHHHHHHHH
T ss_pred cCCcccccHHHHHHHHHHhcCceeccccccccccccc---c-cc------cccCccCeEEEEecCCCCCHHHHHHHHHHH
Confidence 1 1111 34455555 44466665544321110000 0 00 0001247999999988 8888888887777
Q ss_pred HHh
Q psy12791 388 RKA 390 (393)
Q Consensus 388 ~~~ 390 (393)
+++
T Consensus 436 ~~~ 438 (467)
T 2oqx_A 436 KHV 438 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=178.38 Aligned_cols=313 Identities=13% Similarity=0.058 Sum_probs=188.3
Q ss_pred CCCC-CCCC--CCCcc-CCeee-e-CCCC---CCCCCccc-cCCCCchHHHHHHHHHHHhC-C-CcEE-EeccHHHHH-H
Q psy12791 23 QWRS-QCVI--PPIIL-STTFK-Q-NTPG---QPPQGFEY-SRSNNPTRRNLERCIASLEE-A-KHGL-CYSSGLGAV-T 88 (393)
Q Consensus 23 ~~~~-~~~~--~p~~~-~~~~~-~-~~~~---~~~~~~~y-~~~~~~~~~~lr~~la~~~~-~-~~~i-~~~~G~~al-~ 88 (393)
.++| +++. ++++. ++.+. + ++.+ ++.....| +.|+.+...++++.|+++++ . .+.+ ++++|++++ .
T Consensus 55 ~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~ 134 (449)
T 2cjg_A 55 RYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVEN 134 (449)
T ss_dssp EEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH
T ss_pred EEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH
Confidence 3556 3332 56654 45555 5 4444 32222122 24566778999999999986 2 3444 555566777 5
Q ss_pred HHHHh---cC-----------CCCeEEEcCCCccchHHHH----------HHhcccCCcEEEeeCCCC--HH--------
Q psy12791 89 AVTHL---LS-----------AGDHIISGDDVYGGTYRYF----------AQVAPKIGLEVDFVDLRK--IE-------- 134 (393)
Q Consensus 89 ~~~~~---~~-----------~gd~vl~~~~~y~~~~~~~----------~~~~~~~g~~v~~~~~~d--~~-------- 134 (393)
++..+ .. +||+|++.+|.|++..... .........++..+|.+| .+
T Consensus 135 aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 214 (449)
T 2cjg_A 135 ALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214 (449)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhh
Confidence 55322 22 2899999999998632111 111111112667777665 33
Q ss_pred -----HHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccc-cCCC-----CCcC
Q psy12791 135 -----NLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYY-QKSL-----PWGV 196 (393)
Q Consensus 135 -----~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~-~~~~-----~~~~ 196 (393)
++++.+. +++++|+++.++||+|...+ +++|.++|+++ |+++|+||+|..+.. .... ....
T Consensus 215 ~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~~~~~~~~~~ 293 (449)
T 2cjg_A 215 AEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF-DALLIFDEVQTGCGLTGTAWAYQQLDVAP 293 (449)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSTHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccccCCCccCcceeecccCCCc
Confidence 3777773 56888888777899997666 99999999999 999999999995321 1111 1235
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHH-----HHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHH
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF-----LQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEV 269 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 269 (393)
|++ |+||++ |+||++++ +++.+.+.. .........++..+..+...++.+. ...++..++...+
T Consensus 294 di~--t~sK~l------~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l 364 (449)
T 2cjg_A 294 DIV--AFGKKT------QVCGVMAG-RRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364 (449)
T ss_dssp SEE--EECGGG------SSEEEEEC-GGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred eEE--EecCcc------cEEEEEEC-HHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 665 688987 48999997 677664211 1111122335666555555544322 2344555666666
Q ss_pred HHHHhh----CCC-cceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 270 AKFLES----HPC-VKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 270 ~~~l~~----~~~-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
.+.|++ ++. +..+ ++.|.++.+.+. +......+.+.+...++.+..+
T Consensus 365 ~~~L~~l~~~~~~~~~~~------------------~~~g~~~~~~~~-~~~~~~~~~~~l~~~Gv~v~~~--------- 416 (449)
T 2cjg_A 365 RARLDELAADFPAVVLDP------------------RGRGLMCAFSLP-TTADRDELIRQLWQRAVIVLPA--------- 416 (449)
T ss_dssp HHHHHHHHHHSTTTSEEE------------------EEETTEEEEECS-SHHHHHHHHHHHHHTTEECEEE---------
T ss_pred HHHHHHHHhhCCCceeeE------------------eeccEEEEEEEC-ChHHHHHHHHHHHHCCeEEecC---------
Confidence 666654 232 2211 123678888884 3334455666554434443321
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+++||+++++..++++++.+.++|+++.
T Consensus 417 ------------------g~~~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 417 ------------------GADTVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp ------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 14799999999999988888888887653
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=166.24 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=180.9
Q ss_pred chHHHHHHHHHHHhCCC--cEEEe-ccHHHH-H-HHHHHhcCCCCeEE-EcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCY-SSGLGA-V-TAVTHLLSAGDHII-SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~-~~G~~a-l-~~~~~~~~~gd~vl-~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
...++.|+.+++++|++ +.|++ |+|.++ + .++..++ +||++. +..-.|. . .+...++..|+++..++.+
T Consensus 50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~-~--~~~~~a~~~G~~v~~~~~~~ 125 (361)
T 3m5u_A 50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWT-K--KAIKEAQILGVNVKTVASSE 125 (361)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHH-H--HHHHHHHHTTCCEEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHH-H--HHHHHHHHcCCceEEEeccc
Confidence 45678999999999985 35665 776665 7 6777777 788653 3222332 2 3445567789888887653
Q ss_pred ------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccc
Q psy12791 132 ------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTK 205 (393)
Q Consensus 132 ------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK 205 (393)
++++ + ++++|++|.++|..|.||.++|. +++ + |+++++|.+++.+.....+. ..|+++.|.+|
T Consensus 126 ~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-~-~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K 194 (361)
T 3m5u_A 126 ESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----YPK-T-KTPLIVDASSDFFSRKVDFS-NIALFYGGVQK 194 (361)
T ss_dssp TTTSCSCCCC--C-CCTTSSEEEEESEETTTTEECSS-----CCC-C-SSCEEEECGGGTTSSCCCCT-TEEEEEEETTT
T ss_pred CcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-c-CCEEEEEcccccCCCCCCcc-cCCEEEEechh
Confidence 2344 3 78889999999999999999772 333 6 99999999999776533333 47899999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHH--------HH---H--hcCCCCCHHHHHHHHhcc----C--CHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKF--------LQ---N--SMGVVPSPFDCWLVTRGL----K--TLPCRLKEHERGS 266 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~--------~~---~--~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~ 266 (393)
++ ||+| +|+++.+ +++.+++.. .. . ....+++....+.+..++ + .++...++..+..
T Consensus 195 ~~-gp~G--~g~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 195 NA-GISG--LSCIFIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp TS-SCTT--CEEEEEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cc-CCCc--cEEEEEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99 7999 9999998 777766542 01 0 011223332222222222 2 3555666677778
Q ss_pred HHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--CHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 267 IEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 267 ~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
+++.+.|++++++.....+. . ....+++.|.+++ ..+ ..+...|...++.+..|..
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~-----~--------~rs~~ivsf~~~~~~~~~--~~~~~~L~~~gI~~~~g~~------- 328 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHADK-----K--------DRSLMNVSFNIAKNKDLE--PLFVKEAEEAGMIGLKGHR------- 328 (361)
T ss_dssp HHHHHHHHTSTTSEEESSCG-----G--------GBCSSEEEEEESSCTTHH--HHHHHHHHHTTEECCBCCT-------
T ss_pred HHHHHHHHHCCCeeeccCCH-----H--------HcCCeEEEEECCCchhhh--HHHHHHHHHCCCEEecCCC-------
Confidence 88888888777542221110 0 1124689999964 122 3455666554555443311
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
..+.+|+|++.++++++++.+.++|+++.+
T Consensus 329 ------------------~~g~iRiS~~~~~t~edId~l~~al~~~~~ 358 (361)
T 3m5u_A 329 ------------------ILGGIRASIYNALNLDQVKTLCEFMKEFQG 358 (361)
T ss_dssp ------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 025699999999999999999999998753
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-22 Score=191.08 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=158.6
Q ss_pred CCCCC-CCCCCC--Cc-cCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh-CCCcEEEeccHHHHH-HHHHHh--
Q psy12791 22 DQWRS-QCVIPP--II-LSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE-EAKHGLCYSSGLGAV-TAVTHL-- 93 (393)
Q Consensus 22 ~~~~~-~~~~~p--~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~-~~~~~i~~~~G~~al-~~~~~~-- 93 (393)
.+++| .++..| ++ ..+.+.+++.+++.... ...|+++...+|+++|++++ +.+..++++||++|+ .++...
T Consensus 100 ~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~-~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~ 178 (465)
T 2yky_A 100 HAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL-NLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATA 178 (465)
Confidence 35677 555543 43 35677777766644422 22456788899999999998 555677778888887 555432
Q ss_pred cCCCCeEEEcCCCccchHHHHHHhcccCCc--EEEeeCCCCHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHH
Q psy12791 94 LSAGDHIISGDDVYGGTYRYFAQVAPKIGL--EVDFVDLRKIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKA 164 (393)
Q Consensus 94 ~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~--~v~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~ 164 (393)
...+++|++.+++|++............|+ .+..++..|++++++.++ +++++|+++..++++|.+.+ +++
T Consensus 179 ~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~ 258 (465)
T 2yky_A 179 ITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDL 258 (465)
Confidence 245689999999997633211100112344 455666678999999887 57899998877777998887 999
Q ss_pred HHHHHHhCCCcEEEEeCccCcccccCCCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH--H---Hhc
Q psy12791 165 ISAVVKQHPDILLVLDNTFLTAYYQKSLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL--Q---NSM 236 (393)
Q Consensus 165 l~~l~~~~~~~~livDea~~~~~~~~~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~--~---~~~ 236 (393)
|.++|+++ |+++|+||+|. +....... .+...-+.||+|+++ . |+|+||++++ +++++.+... . ...
T Consensus 259 l~~l~~~~-g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg-~-G~piG~v~~~-~~i~~~l~~~~~g~~~~~~ 333 (465)
T 2yky_A 259 LRAEASRC-GALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIG-G-GMSFGAFGGR-RDLMERFDPARDGAFAHAG 333 (465)
Confidence 99999999 99999999999 53211111 122222348999994 4 8999999997 7888877651 1 111
Q ss_pred CCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHh
Q psy12791 237 GVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~ 274 (393)
....++..+..+...++.+. ...++..+..+.+.+.|+
T Consensus 334 T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~ 373 (465)
T 2yky_A 334 TFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLN 373 (465)
Confidence 22334555555545554432 123334444444444444
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-18 Score=169.76 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=152.5
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHH-HH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLG-AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~-al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+.....++++.+|+++|++.++++++|++ ++ .++.+++++||+|++++++|.+. ...+...|+++++++.+
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~----~~~l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSL----THLMMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHH----HHHHHHSCCEEEEECCCBCT
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHH----HHHHHHcCCEEEEEeccccc
Confidence 45668899999999999999999999975 56 77888999999999999999874 34567789999988753
Q ss_pred ------------CHHHHHhhcCC--CCc---EEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-----
Q psy12791 132 ------------KIENLIKYIKP--NTK---MVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ----- 189 (393)
Q Consensus 132 ------------d~~~l~~~l~~--~~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~----- 189 (393)
|++++++++.+ +++ ++++++| |++|.+.|+++|.++|+++ + +++||+|+.+...
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~-~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK-S--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS-E--EEEECTTCTTGGGSGGGT
T ss_pred cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC-c--EEEccccccccccCCccc
Confidence 68889998863 344 8999999 9999999999999999876 4 7999999875311
Q ss_pred --CCCCCc--CcEE---EEcccccccCCCCceEEEEEecChHHHHHHHHHHHhc-CCCCCHHHHHHHHhc---cC--CHH
Q psy12791 190 --KSLPWG--VDIV---LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSM-GVVPSPFDCWLVTRG---LK--TLP 256 (393)
Q Consensus 190 --~~~~~~--~di~---~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~--~~~ 256 (393)
..+..+ +|++ +.|+||+++|+.+ .|++.+++....++++...... .+.++....+.+..+ ++ .-.
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltq--gs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~ 422 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGK 422 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTT--CEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCC--eeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccH
Confidence 122222 5655 9999999976656 8888887442233444443333 333444332222222 22 123
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q psy12791 257 CRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~~ 277 (393)
.++++..+++..+++.|++++
T Consensus 423 ~~~~~l~~~a~~~r~~L~~i~ 443 (715)
T 3n75_A 423 RLINGSIERAIKFRKEIKRLR 443 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 466777778888888777654
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=154.70 Aligned_cols=273 Identities=12% Similarity=0.077 Sum_probs=160.8
Q ss_pred HHHHHHHHHH----Hh--CCCcEEEeccHHHHH-HHHHHhc-------C------------------CC---CeEEEcCC
Q psy12791 61 RRNLERCIAS----LE--EAKHGLCYSSGLGAV-TAVTHLL-------S------------------AG---DHIISGDD 105 (393)
Q Consensus 61 ~~~lr~~la~----~~--~~~~~i~~~~G~~al-~~~~~~~-------~------------------~g---d~vl~~~~ 105 (393)
..++++++++ +. +.+..+++++|++|+ .++.... + +| ++|++.++
T Consensus 108 ~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~ 187 (472)
T 1ohv_A 108 PENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG 187 (472)
T ss_dssp BTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECC
Confidence 3456666555 44 333577778888887 5554331 1 45 89999999
Q ss_pred CccchHHHHHHhcc-----cCCcE-----EEeeCC-----------C------CHHHHHhhcCC------CCcEEEEecC
Q psy12791 106 VYGGTYRYFAQVAP-----KIGLE-----VDFVDL-----------R------KIENLIKYIKP------NTKMVWIENP 152 (393)
Q Consensus 106 ~y~~~~~~~~~~~~-----~~g~~-----v~~~~~-----------~------d~~~l~~~l~~------~~~~v~l~~p 152 (393)
.|++.......+.. ..|.. .+.+|. + |++++++.+.+ ++++|++++.
T Consensus 188 ~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v 267 (472)
T 1ohv_A 188 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI 267 (472)
T ss_dssp CCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCC
Confidence 99874332222111 11211 112221 0 46788888865 7889999888
Q ss_pred CCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc-CCCC---Cc----CcEEEEccccc-ccCCCCceEEEEE
Q psy12791 153 TNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLP---WG----VDIVLYSLTKY-MNGHSDVVMGATV 219 (393)
Q Consensus 153 ~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~-~~~~---~~----~di~~~S~sK~-~~G~~G~r~G~~~ 219 (393)
+|++|.+.+ +++|.++|+++ |+++|+||+|..+... .... .+ .|++ ||||+ ++ +||++
T Consensus 268 ~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~ 338 (472)
T 1ohv_A 268 QSEGGDNHASDDFFRKLRDISRKH-GCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH 338 (472)
T ss_dssp BCTTTCBCCCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh-CCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC
Confidence 899999887 99999999999 9999999999842211 1111 23 5654 78899 53 47776
Q ss_pred ecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHhhC----CC-cceEeCCCCCCCcc
Q psy12791 220 TNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP--CRLKEHERGSIEVAKFLESH----PC-VKGVLHPGLPSHPN 292 (393)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~----~~-~~~v~~~~l~~~~~ 292 (393)
+ +++.. +...........++..+..+...++.+. ...++..+..+.+.+.|+++ |. +..+
T Consensus 339 -~-~~~~~-~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~---------- 405 (472)
T 1ohv_A 339 -K-EEFRP-NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV---------- 405 (472)
T ss_dssp -C-GGGSC-SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE----------
T ss_pred -c-hhhcc-cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee----------
Confidence 4 55421 1111111111335666555544443322 13344445555555555432 21 1111
Q ss_pred hHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec
Q psy12791 293 HELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG 372 (393)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 372 (393)
++.+.++.+.+. +......+.+.+...++.+..+ ..++||++++
T Consensus 406 --------~~~g~~~~~~~~-~~~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~iRi~~~ 449 (472)
T 1ohv_A 406 --------RGRGTFCSFDTP-DESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPT 449 (472)
T ss_dssp --------EEETTEEEEECS-SHHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCC
T ss_pred --------cCCceEEEEEeC-ChhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECC
Confidence 223568888874 4444556666664434333221 1479999999
Q ss_pred CCChHHHHHHHHHHHHHhh
Q psy12791 373 VEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 373 ~~~~~~~i~~l~~al~~~~ 391 (393)
+.+++++++.+.++|+++.
T Consensus 450 ~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 450 LVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=134.24 Aligned_cols=207 Identities=12% Similarity=0.038 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhCCCc--EEEeccHHH-HH-HHHHHhcCC----CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 62 RNLERCIASLEEAKH--GLCYSSGLG-AV-TAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 62 ~~lr~~la~~~~~~~--~i~~~~G~~-al-~~~~~~~~~----gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
+.+...+.+++|.++ ..++++|++ .+ .++++.+++ ++.|+++..+|.+ ..+++...|+..++++..
T Consensus 101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkS----v~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS----CFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH----HHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHH----HHHHHHHcCCeeEEEEeeec
Confidence 345555666778873 445555554 43 444444443 8999999999986 566778899999888762
Q ss_pred ------CHHHHHhhcCC---CCcEEEEecC-CCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-C-----CCCC-
Q psy12791 132 ------KIENLIKYIKP---NTKMVWIENP-TNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-K-----SLPW- 194 (393)
Q Consensus 132 ------d~~~l~~~l~~---~~~~v~l~~p-~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~-----~~~~- 194 (393)
|++.+++++.+ +..++++.+| ++.+|.+-|+++|.++|++| |++++||+||+..... . .+..
T Consensus 177 ~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~-gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 177 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred CccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC-CCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 78999998854 2345555555 44467888999999999999 9999999999963221 1 1122
Q ss_pred cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC-CCCCH-HHHHHHHhc--cCCHHHHHHHHHHHHHHHH
Q psy12791 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG-VVPSP-FDCWLVTRG--LKTLPCRLKEHERGSIEVA 270 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 270 (393)
++|+++.|.||++..+-| .+++..++++..+.+... +.+ ...+| +..+..... .+.+.+.+++..+.++.+.
T Consensus 256 ~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~--~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~ 331 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKM--YPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS 331 (450)
T ss_dssp CCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHH--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHH--hhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999965545 777777767777666432 111 11222 333332222 2234444455566677777
Q ss_pred HHHhhCC
Q psy12791 271 KFLESHP 277 (393)
Q Consensus 271 ~~l~~~~ 277 (393)
+.+++++
T Consensus 332 ~~l~~~~ 338 (450)
T 3bc8_A 332 TQLKKLA 338 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHhhH
Confidence 7776654
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-14 Score=130.93 Aligned_cols=196 Identities=12% Similarity=0.031 Sum_probs=133.3
Q ss_pred hCCC--cEEEeccHHHH-H-HHHHHhcCC----CCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHH
Q psy12791 72 EEAK--HGLCYSSGLGA-V-TAVTHLLSA----GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIEN 135 (393)
Q Consensus 72 ~~~~--~~i~~~~G~~a-l-~~~~~~~~~----gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~ 135 (393)
+|.+ ...++.+|++. + .++++.+++ +|+|+++..+|.+ ..+.+...|+++++++.. |+++
T Consensus 129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKS----v~kAliL~Gl~Pv~V~p~~d~~~~~id~e~ 204 (501)
T 3hl2_A 129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS----CFKSMITAGFEPVVIENVLEGDELRTDLKA 204 (501)
T ss_dssp TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH----HHHHHHHTTCEEEEECEEEETTEEEECHHH
T ss_pred cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHH----HHHHHHHcCCeEEEEeeeecccccCCCHHH
Confidence 4777 35777788775 4 556666553 4999999999986 455677889999998772 7889
Q ss_pred HHhhcCC---CCcEEEE-ecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc------CCCCCc-CcEEEEccc
Q psy12791 136 LIKYIKP---NTKMVWI-ENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ------KSLPWG-VDIVLYSLT 204 (393)
Q Consensus 136 l~~~l~~---~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~------~~~~~~-~di~~~S~s 204 (393)
+++++++ +..++++ +.++|..+.+-|+++|.++|++| |++++||+||+..... ..+..| +|+++.|.|
T Consensus 205 le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~H 283 (501)
T 3hl2_A 205 VEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLD 283 (501)
T ss_dssp HHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEeccc
Confidence 9888864 2334444 44455455667899999999999 9999999999974321 112246 999999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHhcCC-CCCHHH-HHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV-VPSPFD-CWLVTR--GLKTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
|++.-+-| +|.+..+++++++.+...- .|. ..++.. .++.+. +.+.+...+++..++.+.+.+.|+++
T Consensus 284 K~llvpIG--G~ii~~~d~e~l~~~~~~y--PGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 284 KNFMVPVG--GAIIAGFNDSFIQEISKMY--PGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp HHHCCCSS--CEEEEESCHHHHHHHHHTS--CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecC--ceEEEeCCHHHHHHHHHhC--CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99853323 5566577777777763322 122 222322 333332 33456667777778888888888764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=123.33 Aligned_cols=290 Identities=17% Similarity=0.093 Sum_probs=169.8
Q ss_pred CCchHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhccc----------
Q psy12791 57 NNPTRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPK---------- 120 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~---------- 120 (393)
+.+...+|.+.|+++...+ ...+++||++|+ .++. ......++|+....+|++...........
T Consensus 105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p 184 (456)
T 4atq_A 105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP 184 (456)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence 3456677888999887543 466778999997 5542 22344568888888887753222211110
Q ss_pred CCcEEEeeCCC-----------CH-------HHHHhhcC-CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEE
Q psy12791 121 IGLEVDFVDLR-----------KI-------ENLIKYIK-PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILL 177 (393)
Q Consensus 121 ~g~~v~~~~~~-----------d~-------~~l~~~l~-~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~l 177 (393)
....+..+|.. +. +.++..+. +++.+|+++..+...|.+.+ +++|.++|++| |+++
T Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gill 263 (456)
T 4atq_A 185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVF 263 (456)
T ss_dssp CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEE
T ss_pred ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCce
Confidence 11234445432 12 22333333 35788999988888888876 99999999999 9999
Q ss_pred EEeCccCccc-c-----cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Q psy12791 178 VLDNTFLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG 251 (393)
Q Consensus 178 ivDea~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
|+||++..+. . ........|+++ ++|.++ .|+.+|.++++ +++.+.+...........+|..+..+++.
T Consensus 264 I~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg--gg~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~ 338 (456)
T 4atq_A 264 IADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIA--GGLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAA 338 (456)
T ss_dssp EEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGG--TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHH
T ss_pred EecccccccCCccccccccccCCCCchhh--hhhccc--CcCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHH
Confidence 9999998631 1 122233578886 569985 45679999998 77777654322222233467777777666
Q ss_pred cCCHHH--HHHHHHHHHHHHHHHHh----hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC------CHHHHH
Q psy12791 252 LKTLPC--RLKEHERGSIEVAKFLE----SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG------GAEETR 319 (393)
Q Consensus 252 ~~~~~~--~~~~~~~~~~~l~~~l~----~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 319 (393)
++.+++ ..++..+..+.+.+.|+ +++.. ..+ .+.+.+|.|.++.|.+.. +.+...
T Consensus 339 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~---~~~----------~v~~VRG~Gl~~giel~~~~~~~~~~~~~~ 405 (456)
T 4atq_A 339 IDTMEQHDLNGRARHIEELALGKLRELAAELSAG---GGS----------VVGDIRGRGAMLAIELVQPGSKEPNAELTK 405 (456)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC------------------CEEEEEEETTEEEEEEBCTTSCCBCHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccc---cCC----------ceEEeeecceEEEEEEecCCCCCcCHHHHH
Confidence 654432 12222232333333333 22210 000 112235567788888741 344566
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++.+.+...++-+... |...+.|||.+.+..++++++.+.++|++.
T Consensus 406 ~v~~~~~~~Gvl~~~~-------------------------g~~~~~irl~PpL~it~~~id~~l~~l~~a 451 (456)
T 4atq_A 406 AVAAACLKEGVIILTC-------------------------GTYGNVIRLLPPLVISDELLIDGLEVLAAA 451 (456)
T ss_dssp HHHHHHHHTTEECEEE-------------------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEec-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6666655444333211 112578999988877777777666666544
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-12 Score=118.53 Aligned_cols=239 Identities=14% Similarity=0.120 Sum_probs=149.6
Q ss_pred HHHHHHHhCCCc-----EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH-H-HH--hcccCC--cEEEeeCCC-
Q psy12791 65 ERCIASLEEAKH-----GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY-F-AQ--VAPKIG--LEVDFVDLR- 131 (393)
Q Consensus 65 r~~la~~~~~~~-----~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~-~-~~--~~~~~g--~~v~~~~~~- 131 (393)
.+...+++|++. .|-.-||++|. .+..++++|||+|+..+..+++...- + .. -....| .+.+.++++
T Consensus 106 ~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~ 185 (490)
T 3ou5_A 106 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP 185 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEET
T ss_pred HHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCC
Confidence 344566889874 58889999996 88899999999999998877653110 0 00 001111 133333332
Q ss_pred -----CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEEE
Q psy12791 132 -----KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIVL 200 (393)
Q Consensus 132 -----d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~~ 200 (393)
|.+++++...+ ++++|++....+| ..+|.++++++|++. |++|++|.++..+ .+.+|+.+ +|+++
T Consensus 186 ~t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVT 261 (490)
T 3ou5_A 186 KTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFKH-ADIVT 261 (490)
T ss_dssp TTTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGGT-CSEEE
T ss_pred CCCcccHHHHHHHHhhcCCCeEEECCccCc--cccCHHHHHHHHhhc-ccEEEechhhhhhhhcccccCCcccc-ceEEe
Confidence 77888776543 6899998766666 578999999999999 9999999999874 34567765 89999
Q ss_pred EcccccccCCCCceEEEEEecCh--------------HHHHHHHHHHHh--cCCCCCHHHHHHHH---h-ccCCHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDD--------------SLQARLKFLQNS--MGVVPSPFDCWLVT---R-GLKTLPCRLK 260 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~~~---~-~~~~~~~~~~ 260 (393)
.|.||.+.|| |+|.+.++++ ++.+++.....+ .|+......+..+. . .........+
T Consensus 262 tTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~ 338 (490)
T 3ou5_A 262 TTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL 338 (490)
T ss_dssp EESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ccccccccCC---CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 9999999766 7899998742 566777554332 22222122222211 1 1223556677
Q ss_pred HHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 261 EHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
+..+|++.|++.|.+... . +. .+.. -..++.+.+.+ +-.+++..++...+
T Consensus 339 qVv~NAkaLA~~L~~~G~-~-vv-sGgT--------------dnHlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 339 QVLKNARAMADALLERGY-S-LV-SGGT--------------DNHLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp HHHHHHHHHHHHHHHTTC-E-EG-GGSC--------------SSSEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHhCCC-e-ee-cCCC--------------CceEEEEeccccCCCHHHHHHHHHHcCc
Confidence 788999999999976532 1 21 1111 13567777642 45677878777664
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=126.56 Aligned_cols=209 Identities=17% Similarity=0.134 Sum_probs=133.9
Q ss_pred CchHHHHHHHHHHHhCC-CcEEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHh--cccCCcEEEeeCCC
Q psy12791 58 NPTRRNLERCIASLEEA-KHGLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQV--APKIGLEVDFVDLR 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~-~~~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~--~~~~g~~v~~~~~~ 131 (393)
++...+|.+.|++.+.. +...+++||++|. .++... ....++|+....+|++........ ..........+|.+
T Consensus 126 ~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n 205 (454)
T 4ao9_A 126 NLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN 205 (454)
T ss_dssp ESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc
Confidence 45567888889888754 4567778999986 554322 234567888888887632110000 01112356677888
Q ss_pred CHHHHHhhcC---CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcccccC-----CCCCcCcEE
Q psy12791 132 KIENLIKYIK---PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQK-----SLPWGVDIV 199 (393)
Q Consensus 132 d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~~-----~~~~~~di~ 199 (393)
|++.+++.+. +++.+|+++..++..|.+.| +++|.++|++| |+++|+||++.. -... ......|++
T Consensus 206 d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG-R~G~~~a~e~~gv~PDi~ 283 (454)
T 4ao9_A 206 DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS-RLAPHGLANKLGIRSDLT 283 (454)
T ss_dssp CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG-GGSTTCHHHHHTCCCSEE
T ss_pred hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC-CCccccchhccCCCCcEE
Confidence 9988888775 35788999988888899887 99999999999 999999999974 2111 112346887
Q ss_pred EEcccccccCCCCceEEEEEecChHHHHHHHHHHH--hcC--CCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMG--VVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 272 (393)
+ ++|.++ .|+.+|+++++ +++++.+..... ..+ ...+|..+..+...+ +. +...++..+..+++.+.
T Consensus 284 t--~gK~lg--gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 284 T--LGKYIG--GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRAR 357 (454)
T ss_dssp E--EEGGGG--TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred E--eccccC--CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHH
Confidence 4 779995 35679999987 788776532111 111 123566655544443 33 23445555555556555
Q ss_pred Hh
Q psy12791 273 LE 274 (393)
Q Consensus 273 l~ 274 (393)
|+
T Consensus 358 L~ 359 (454)
T 4ao9_A 358 LN 359 (454)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=131.11 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=124.9
Q ss_pred HHHHhhcC--------CCCcEEEEecC-CCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-ccCCC-----CC
Q psy12791 134 ENLIKYIK--------PNTKMVWIENP-TNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-YQKSL-----PW 194 (393)
Q Consensus 134 ~~l~~~l~--------~~~~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~~~~~-----~~ 194 (393)
+.+++.+. +++.+|+++.. ++..|.+.+ +++|.++|++| |+++|+||++..+. ..... ..
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~fa~e~~gv 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR-KIPVIFDEVFTGFWRLGVETTTELLGC 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-TCCEEEECTTTTTTTTSBSSTHHHHSS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-CCeEEEEcCccccccCCCchhhHhcCC
Confidence 45666664 24678888886 888888886 89999999999 99999999998531 11111 12
Q ss_pred cCcEEEEcccccccCCCC-ceEEEEEecChHHHHHHHHHH------HhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHH
Q psy12791 195 GVDIVLYSLTKYMNGHSD-VVMGATVTNDDSLQARLKFLQ------NSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERG 265 (393)
Q Consensus 195 ~~di~~~S~sK~~~G~~G-~r~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (393)
..|++ +++|.++| | +++|+++++ +++.+.+.... .......+|..++.+...++.+++ ..++..++
T Consensus 656 ~PDii--tlsK~L~g--G~~Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~ 730 (831)
T 4a0g_A 656 KPDIA--CFAKLLTG--GMVPLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQ 730 (831)
T ss_dssp CCSEE--EECGGGGT--TSSCCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTT
T ss_pred CCcEE--EEeccccc--CccCcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45776 58899953 6 789999998 88887664211 111223457776665554432211 00010000
Q ss_pred --------HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH-------HHHHHHHHhcCcccc
Q psy12791 266 --------SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA-------EETRIFLESLLIFRC 330 (393)
Q Consensus 266 --------~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 330 (393)
.+.+.+.+..++.+..+ ++.|.++.+.+..+. +....+.+.+...++
T Consensus 731 ~~~l~~~l~~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv 792 (831)
T 4a0g_A 731 GKTLRELWDEELVQQISSHSAVQRV------------------VVIGTLFALELKADASNSGYASLYAKSLLIMLREDGI 792 (831)
T ss_dssp SSBBCCCSCHHHHHHHHHSTTEEEE------------------EEETTEEEEEEC---------CHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeE------------------eecccEEEEEEecCccccccchHHHHHHHHHHHHCCc
Confidence 01233344445544333 334677888884221 234455555544343
Q ss_pred ccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 331 AESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 331 ~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+.+ ..+.|||++.+..++++++.+.++|.++.
T Consensus 793 ~v~p----------------------------~g~~lrl~pp~~~t~e~id~~~~~l~~~l 825 (831)
T 4a0g_A 793 FTRP----------------------------LGNVIYLMCGPCTSPEICRRLLTKLYKRL 825 (831)
T ss_dssp ECCC----------------------------BTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEe----------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3321 03689999998989999988888887653
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-10 Score=111.32 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=128.1
Q ss_pred CchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHhc-------CC-CCeEEEcCCCccchHHHHHHhc-----ccC
Q psy12791 58 NPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHLL-------SA-GDHIISGDDVYGGTYRYFAQVA-----PKI 121 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~~-------~~-gd~vl~~~~~y~~~~~~~~~~~-----~~~ 121 (393)
++...+|.++|++....+ ...+.+||++|+ .++.... ++ ..+|+.-...|++......... +..
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~ 189 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVF 189 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGG
T ss_pred CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccccccc
Confidence 455667888999887644 567778899987 5543211 23 3467888888876432211111 011
Q ss_pred C---cEEEeeCCC------------------CHHHHHhhcC----CCCcEEEEecCCCCcccccC----HHHHHHHHHhC
Q psy12791 122 G---LEVDFVDLR------------------KIENLIKYIK----PNTKMVWIENPTNPLMTVFD----VKAISAVVKQH 172 (393)
Q Consensus 122 g---~~v~~~~~~------------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~ 172 (393)
+ .....++.. ..+++++.+. +++.+|+++..+...|.+.| +++|.++|+++
T Consensus 190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~ 269 (473)
T 4e3q_A 190 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY 269 (473)
T ss_dssp TCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc
Confidence 1 112233221 0233333332 34678888988888888876 99999999999
Q ss_pred CCcEEEEeCccCccc-cc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh-------cCCC
Q psy12791 173 PDILLVLDNTFLTAY-YQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS-------MGVV 239 (393)
Q Consensus 173 ~~~~livDea~~~~~-~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~ 239 (393)
|+++|+||++..+- .. .......|+++ ++|.++ -.++.+|.++++ +++.+.+...... ....
T Consensus 270 -gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~-gG~~Pl~av~~~-~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 270 -DIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLT-AGFFPMGAVILG-PELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp -TCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGG-TTSSCCEEEEEC-HHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred -ceEEeccCccccCCcccchhHHHhcCCCCChHH--hccccc-CCCCCccccccc-HHHHHHhccccccccccccCCCCC
Confidence 99999999998741 11 11223578885 679994 233679999998 8888877543221 1223
Q ss_pred CCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHhh
Q psy12791 240 PSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLES 275 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~ 275 (393)
..|..+..+++.++.+.+ ..++..+...++.+.|++
T Consensus 345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~ 382 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKH 382 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHH
Confidence 467777777666654432 233334444455555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 393 | ||||
| d1y4ia1 | 397 | c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci | 1e-120 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 1e-111 | |
| d1n8pa_ | 393 | c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba | 1e-105 | |
| d2ctza1 | 421 | c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry | 1e-105 | |
| d1ibja_ | 380 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale | 1e-102 | |
| d1qgna_ | 398 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C | 1e-100 | |
| d1e5ea_ | 394 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 2e-99 | |
| d1cs1a_ | 384 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E | 5e-98 | |
| d1pffa_ | 331 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 1e-87 | |
| d1cl1a_ | 391 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche | 7e-72 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 1e-33 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 1e-10 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-09 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 2e-07 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-07 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 6e-07 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 9e-07 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 2e-06 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 4e-06 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 1e-04 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 0.002 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 0.002 |
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Score = 352 bits (903), Expect = e-120
Identities = 156/390 (40%), Positives = 230/390 (58%), Gaps = 11/390 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
F T+ VH G +PD + + PI ++TF ++ Q G+ Y+R NPT
Sbjct: 8 FNTQIVHAGQQPDPS-TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAVTH-LLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A LE + GL +SG+ A+T L GDHI+S +YG T+ + + PK
Sbjct: 67 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+ V FVD K E + ++P TK+V+IE P NP +++ D++ ++ + LLV+DN
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGI-AHQQGALLVVDN 185
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
TF++ Y Q+ L G DIV++S+TKY+NGH DV+ G V + + QAR L++ G
Sbjct: 186 TFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCM 245
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SPF+ WL RG+KTL R++ H ++++A+FLE HP + V +PGL SHP +EL + Q
Sbjct: 246 SPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM 305
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
S G++SF + GG E R + S+ + A SLG E+L PA MTH + E R
Sbjct: 306 SLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKA 365
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GITD L+RLSVG+E D+I DL+ A+RKA
Sbjct: 366 GITDGLIRLSVGLEDPEDIINDLEHAIRKA 395
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 329 bits (845), Expect = e-111
Identities = 144/390 (36%), Positives = 225/390 (57%), Gaps = 11/390 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP-------GQPPQGFEYSRSNNPTRR 62
FAT+A+H G +P ++PP+ + TF T G YSR +NPT
Sbjct: 4 FATRAIHHGYDPQDH-GGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLN 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE +ASLE + GL +SG+GA+ + + LL GD ++ G+ +YG T+ + +
Sbjct: 63 LLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G+++ VD+ ++ L + P T++++ E+P NP M + D+ ++ + ++H +V+DN
Sbjct: 123 GVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH-GATVVVDN 181
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL-QARLKFLQNSMGVVP 240
T+ T Y Q+ L G D+V++S TKY++GH D+ G V + + + RL+ L++ G V
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D L+ RG+KTL R+ H + +A+FL P V+ + +PGL S P + LA+ Q
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM 301
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
S GM++F + GG R F+ +L +F A SLG ESLA PA MTH S E R
Sbjct: 302 SQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHY 361
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKA 390
GI++ LVRLSVG+E DL+AD+ QAL+ +
Sbjct: 362 GISEGLVRLSVGLEDIDDLLADVQQALKAS 391
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 314 bits (804), Expect = e-105
Identities = 189/387 (48%), Positives = 257/387 (66%), Gaps = 9/387 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
FATKA+H G D S VI PI LSTTFKQ++P P +EYSRS NP R NLER +A
Sbjct: 8 FATKAIHAGEHVDVHGS--VIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVA 65
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129
+LE A++GL +SSG + L G H +S DVYGGT+RYF +VA G+E F +
Sbjct: 66 ALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125
Query: 130 LRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHP---DILLVLDNTFLTA 186
+ +L + IK NTK+VWIE PTNP + V D++ ++ ++K+H D++LV+DNTFL+
Sbjct: 126 -DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSP 184
Query: 187 YYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
Y L +G DIV++S TKY+NGHSDVV+G TN+ L RL+FLQN++G +PSPFD W
Sbjct: 185 YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAW 244
Query: 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWSGT-- 303
L RGLKTL R+++ + ++A+FL + V V +PGL +HPN+++ Q
Sbjct: 245 LTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALG 304
Query: 304 SGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGIT 363
GM+SF + GGAE F S +F AESLGGIESL ++PA MTH IPKE R+A G+
Sbjct: 305 GGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVF 364
Query: 364 DNLVRLSVGVEGYTDLIADLDQALRKA 390
D+LVR+SVG+E DL+ D+ QAL++A
Sbjct: 365 DDLVRISVGIEDTDDLLEDIKQALKQA 391
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Score = 314 bits (804), Expect = e-105
Identities = 124/420 (29%), Positives = 201/420 (47%), Gaps = 44/420 (10%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
F T +H G EP+ + PI +T++ +P G YSR NPT
Sbjct: 3 FETLQLHAGYEPEPT-TLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVD 61
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
LE+ +A+LE K L +SG A T L AGD+I+S ++YGGT+ F ++
Sbjct: 62 VLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL 121
Query: 122 GLEVDFVDLRKIENL-IKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLD 180
G+EV F + + T+ W+E+ NP + + D++A++ ++ L+V +
Sbjct: 122 GIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDN 181
Query: 181 NTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL--------------- 225
+ Y + L WG +V +SLTK++ GH V+ GA V +
Sbjct: 182 TFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241
Query: 226 -----------------QARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIE 268
+AR+ L++ G PF+ W+V G++TL R + H ++
Sbjct: 242 YHGLRLTEAFGELAFIVKARVDGLRD-QGQALGPFEAWVVLLGMETLSLRAERHVENTLH 300
Query: 269 VAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSG-MLSFYVNGGAEETRIFLESLLI 327
+A +L P V V +PGLP HP+H+ A+ + G G +L+F + GG E + F+ L +
Sbjct: 301 LAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKL 360
Query: 328 FRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQAL 387
++G +LA PA TH + E + G++ +VRLSVG+E DL A+L +AL
Sbjct: 361 ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 305 bits (782), Expect = e-102
Identities = 142/381 (37%), Positives = 232/381 (60%), Gaps = 5/381 (1%)
Query: 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCI 68
+ +T V++ ++ D + + + P+ + TFKQ + + ++Y+RS NPTR LE +
Sbjct: 2 SVSTLLVNLDNKFDPFDA--MSTPLYQTATFKQPSAIENG-PYDYTRSGNPTRDALESLL 58
Query: 69 ASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
A L++A C++SG+ A++AVTHL+ G+ I++GDDVYGG+ R +QV P+ G+ V V
Sbjct: 59 AKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
+ K++ + I P TK+VW+E+PTNP + D++ IS + L+++DN+ ++
Sbjct: 119 NTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ-GALVLVDNSIMSPVL 177
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
+ L G DIV++S TK++ GHSDV+ G + L + FLQNS G +PFDCWL
Sbjct: 178 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLC 237
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RG+KT+ R+++ + + ++A +L SHP VK V + GLP HP H + +G +
Sbjct: 238 LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHH-LHFSQAKGAGSVF 296
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
++ G ++ +E+ F A S G ++SL +P M+H SIP E R+A G+T++LVR
Sbjct: 297 SFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVR 356
Query: 369 LSVGVEGYTDLIADLDQALRK 389
+S G+E DLI+DLD A +
Sbjct: 357 ISAGIEDVDDLISDLDIAFKT 377
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 300 bits (768), Expect = e-100
Identities = 131/398 (32%), Positives = 211/398 (53%), Gaps = 15/398 (3%)
Query: 2 SFLPQDTAFATKAVHIGSEPDQWR-SQCVIPPIILSTTFKQNTPGQ-------PPQGFEY 53
SFL D + A+H G + + + P++ ++ + N + FEY
Sbjct: 5 SFLNSD---GSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEY 61
Query: 54 SRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAV-THLLSAGDHIISGDDVYGGTYR 112
R NPT LE I++LE A+ L +SG+ A T + L+ AG HI++ D Y T
Sbjct: 62 GRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRI 121
Query: 113 YFAQVAPKIGLEVDFVDLRKIENLIKYIKPNT-KMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ + PK+G+ +D + L + + + E+PTNP + D++ +S + +
Sbjct: 122 FIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHE 181
Query: 172 HPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231
L+ +D TF T QK+L G D+VL+S TK++ G + V+ ++ L + ++
Sbjct: 182 K-GALVCIDGTFATPLNQKALALGADLVLHSATKFL-GGHNDVLAGCISGPLKLVSEIRN 239
Query: 232 LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291
L + +G +P +L+ RG+KTL R+++ ++ +A+ LE+HP V+ V +PGL SHP
Sbjct: 240 LHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHP 299
Query: 292 NHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351
H +AK Q +G G +SF V+G T F+++L I A S GG ES+ D PA M++
Sbjct: 300 EHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWD 359
Query: 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + R GI DNLVR S GVE + DL AD+ QAL
Sbjct: 360 LSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDS 397
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Score = 299 bits (765), Expect = 2e-99
Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRR 62
AT +H + DQ+ + IPPI ++TF + Q G+ Y+R NPT
Sbjct: 5 PATACIHANPQKDQFGA--AIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVS 62
Query: 63 NLERCIASLEEAKHGLCYSSGLGAVTA-VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
NLE IA LE+ + + SSG+GA+ A V +L AGDH+IS + +YG T+ F K
Sbjct: 63 NLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF 122
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDN 181
G++VDF++ + K++KPNTK+V+ E P NP + + D++ + +L++ DN
Sbjct: 123 GIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 182
Query: 182 TFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMGVVP 240
TF + + +GVD+V++S TKY+NGH+DVV G D LQ R+ +++ G V
Sbjct: 183 TFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI 242
Query: 241 SPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQW 300
SP D WL+TRGL TL R+K +++VA++L+SHP V+ V +PG H H++AK Q
Sbjct: 243 SPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM 302
Query: 301 SGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDAL 360
M++F + G E + L++L + A SLGG ESL PA MTH +PKE R+A
Sbjct: 303 RMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAA 362
Query: 361 GITDNLVRLSVGVEGYTDLIADLDQALRKACK 392
GITD ++RLSVG+E +LIAD Q L +
Sbjct: 363 GITDGMIRLSVGIEDADELIADFKQGLDALLR 394
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Score = 295 bits (755), Expect = 5e-98
Identities = 151/384 (39%), Positives = 222/384 (57%), Gaps = 4/384 (1%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIA 69
AT AV G D+ + CV+PPI LS+T+ +P + +YSR NPTR ++R +A
Sbjct: 3 QATIAVRSGLNDDE-QYGCVVPPIHLSSTYNFTGFNEP-RAHDYSRRGNPTRDVVQRALA 60
Query: 70 SLEEAKHGLCYSSGLGAVTAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128
LE + ++G+ A+ VT + L GD +++ D YGG+YR F +A + V FV
Sbjct: 61 ELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 120
Query: 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY 188
D + L + K+V +E+P+NPL+ V D+ I + ++ + V+DNTFL+
Sbjct: 121 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVS-VVDNTFLSPAL 179
Query: 189 QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248
Q L G D+VL+S TKY+NGHSDVV G + D + L + N++GV FD +L+
Sbjct: 180 QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLL 239
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
RGL+TL R++ +R + + K+L++ P VK + HP LP + HE+A Q G MLS
Sbjct: 240 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS 299
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
F ++G + R FL L +F AESLGG+ESL A MTH + E R A GI++ L+R
Sbjct: 300 FELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLR 359
Query: 369 LSVGVEGYTDLIADLDQALRKACK 392
+S G+E DLIADL+ R A K
Sbjct: 360 ISTGIEDGEDLIADLENGFRAANK 383
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Score = 266 bits (681), Expect = 1e-87
Identities = 142/328 (43%), Positives = 200/328 (60%), Gaps = 3/328 (0%)
Query: 64 LERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122
LE IA LE A+ +SG+GA+ +V L AGDH+IS D +YG T+ F K G
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNT 182
+EVDF+D+ N+ K++KPNT++V+ E P NP + V D++ ++ DIL+++DNT
Sbjct: 63 VEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNT 122
Query: 183 FLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQ-ARLKFLQNSMGVVPS 241
F + L GVDIV++S TKY+NGH+DVV G + D + + + +++ G + S
Sbjct: 123 FASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS 182
Query: 242 PFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301
P D WL+TRG TL R+K + +VA+FL H VK V +PGLP HP HE+AK Q
Sbjct: 183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK 242
Query: 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALG 361
M++F V+G + + L++ + A SLGG ESL PA MTH +PKE R+A G
Sbjct: 243 MFGSMIAFDVDGLEKAKK-VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301
Query: 362 ITDNLVRLSVGVEGYTDLIADLDQALRK 389
+TDNL+RLSVG E D+I DL QAL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQALDL 329
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Score = 228 bits (581), Expect = 7e-72
Identities = 110/392 (28%), Positives = 195/392 (49%), Gaps = 16/392 (4%)
Query: 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTP--------GQPPQGFEYSRSNNPTR 61
T+ V+ G + V I +++ ++ + Y R T
Sbjct: 2 LDTQLVNAGRSKK-YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTH 60
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVT-AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120
+L++ + LE + + G AV ++ + GDH++ + Y + + +++ K
Sbjct: 61 FSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK 120
Query: 121 IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVL 179
+G+ + D +++K+++PNTK+V++E+P + M V DV AI A V+ PD ++++
Sbjct: 121 LGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMI 180
Query: 180 DNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239
DNT+ K+L +G+D+ + + TKY+ GHSD ++G V N + + MG +
Sbjct: 181 DNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQM 239
Query: 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQ 299
++ +RGL+TL RL++H S++VA++L HP V V HP LP HE K
Sbjct: 240 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRD 299
Query: 300 WSGTSGMLSFYVNG--GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETR 357
++G+SG+ SF + EE +L++ +F A S GG ESL +I +
Sbjct: 300 FTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAI--RPQ 357
Query: 358 DALGITDNLVRLSVGVEGYTDLIADLDQALRK 389
+ + L+RL +G+E DLIADLD +
Sbjct: 358 GEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 389
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 126 bits (317), Expect = 1e-33
Identities = 38/318 (11%), Positives = 96/318 (30%), Gaps = 25/318 (7%)
Query: 62 RNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKI 121
+E + ++ A+ A L I ++ G + +
Sbjct: 56 NEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPG----HPSIERSCK 111
Query: 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTN-PLMTVFDVKAISAVVKQHPDILLVLD 180
+ + + K+ ++ I +T ++ + + ++ + + K + ++ + ++ +D
Sbjct: 112 IVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA-KNKEAIVFVD 170
Query: 181 NTFLTAYY-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235
+ +L G D+V+ S K M G + + L ++
Sbjct: 171 DASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL----LAGKKELVDKIYIEGTK 226
Query: 236 MGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHE 294
G+ P + R LK R+++ + + +
Sbjct: 227 FGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 286
Query: 295 LA-KSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353
+ + E L++ I ++A +P I
Sbjct: 287 TPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGII--------TITVAGMPGASKSLRID 338
Query: 354 KETRDALGITDNLVRLSV 371
+RDA I DN + ++
Sbjct: 339 LTSRDAERIDDNYIIKAI 356
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 59.9 bits (144), Expect = 1e-10
Identities = 52/312 (16%), Positives = 97/312 (31%), Gaps = 28/312 (8%)
Query: 84 LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIK 138
L A G HII+ + Q+ + G EV ++ ++ ++ L
Sbjct: 80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLE-REGFEVTYLAPQRNGIIDLKELEA 138
Query: 139 YIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDI 198
++ +T +V I + N + V D+ AI + + I V + VD+
Sbjct: 139 AMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDL 198
Query: 199 VLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV--TRGLKTLP 256
+ +S K +GA + V G+
Sbjct: 199 MSFSGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255
Query: 257 CRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316
KE +E + L + L G+ L G +L+ N
Sbjct: 256 RIAKEEMATEMERLRGLRNR------LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEG 309
Query: 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376
E+ I + + A S G + A L +++ A +R S+G +
Sbjct: 310 ESLI----MALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSS----IRFSLGR--F 359
Query: 377 TDLIADLDQALR 388
T ++D +
Sbjct: 360 TT-EEEIDYTIE 370
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 55.5 bits (133), Expect = 3e-09
Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 21/215 (9%)
Query: 47 PPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSAGDHIISGDDV 106
PP G R + E + S+ + + +L GD +I
Sbjct: 66 PPAGIPELREALAEKFRRENGL-SVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPY 124
Query: 107 YGGTYRYFAQVAPKIGLEVDFVDLRK----IENLIKYIKPNTKMVWIENPTNPLMTVFD- 161
+ Y + A + +EV+ + E + + I P TK + + +P NP V+
Sbjct: 125 WVS-YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQK------SLPWGVDIVLYSLTKYMN--GHS 211
++A++ + +H D LV D + Y+ + + + K G
Sbjct: 184 EVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWR 242
Query: 212 DVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246
+G + ++A + S +
Sbjct: 243 ---IGYACGPKEVIKAMASVSRQSTTSPDTIAQWA 274
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 56/371 (15%), Positives = 106/371 (28%), Gaps = 52/371 (14%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLL-SAGDHIISGDDVYGGTYRYFAQ 116
+ +LE+ + L KH + G GA ++ L G ++ +
Sbjct: 74 SENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKN 133
Query: 117 VAPKIGLEVDF-------------VDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVF-- 160
A + + D +DL K+ LIK N + + N
Sbjct: 134 GATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVS 193
Query: 161 --DVKAISAVVKQHPDILLVLDNT--FLTAYYQKSLPWG-VDIVLYSLTKYMNGHSDVVM 215
+++A+ + + I + D T AY+ K G ++ + + M ++D
Sbjct: 194 MANMRAVHEMASTY-GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCT 252
Query: 216 ------------GATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHE 263
G ND+ + + K L +PS + R
Sbjct: 253 MSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY 312
Query: 264 RGSIEVAKFLESHPCVKGVLHPGLPSHP-NHELAKSQWSGTSGMLSFYVNGGAEETRIFL 322
K + + H + + + I++
Sbjct: 313 EYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYM 372
Query: 323 ESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIAD 382
E+ R E GI S T ++ + VRL++ YT A
Sbjct: 373 ETG--VRSMER--GIVSAGRSKE--TGENHRPKL--------ETVRLTIPRRVYTY--AH 416
Query: 383 LDQALRKACKV 393
+D K+
Sbjct: 417 MDVVADGIIKL 427
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 49.1 bits (116), Expect = 4e-07
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 89 AVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-------IENLIKYIK 141
++ L G+ ++ + Y +A G + V + ++ L KY+
Sbjct: 102 GLSAFLKDGEEVLIPTPAFVS-YAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVT 157
Query: 142 PNTKMVWIENPTNPLMTVF---DVKAISAVVKQHPDILLVLDNTFLTAYYQ-------KS 191
T+ + I +P NP V D++ I+ V +H D++++ D + Y S
Sbjct: 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIAS 216
Query: 192 LPWGVD--IVLYSLTKYMN 208
L + I + +K
Sbjct: 217 LDGMFERTITVNGFSKTFA 235
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 48.8 bits (115), Expect = 6e-07
Identities = 49/385 (12%), Positives = 108/385 (28%), Gaps = 64/385 (16%)
Query: 56 SNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDD--------V 106
S + + L + ++ ++ + G GA + L+ + D
Sbjct: 71 SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNY 130
Query: 107 YGGTYRYFAQVA---------------PKIGLEVDFVDLRKIENLIKYIKPNTKMVWIEN 151
+ T + +Q+ DL +E I+ + PN +
Sbjct: 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190
Query: 152 PTN-----PLMTVFDVKAISAVVKQHPDILLVLD--NTFLTAYYQKSLPWGV-DIVLYSL 203
T+ +++ ++KA+ ++ K++ DI +V+D AY+ K D + +
Sbjct: 191 ITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249
Query: 204 TKYMNGHSDVVMGAT------------VTNDDSLQARLKFLQN---SMGVVPSPFDCWLV 248
T+ ++D++ + DDS + P+
Sbjct: 250 TRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG 309
Query: 249 TRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308
+ + ++ + H + +
Sbjct: 310 AMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPA 369
Query: 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVR 368
A ++ + + R E G L P P E L+R
Sbjct: 370 DQFPAQALACELYKVAGI--RAVE--IGSFLLGRDPKTGKQLPCPAE----------LLR 415
Query: 369 LSVGVEGYTDLIADLDQALRKACKV 393
L++ YT +D + V
Sbjct: 416 LTIPRATYTQ--THMDFIIEAFKHV 438
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (113), Expect = 9e-07
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 39 FKQNTPGQPPQG-FEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTAVTHLLSA- 96
F ++ +G S N+ + + A+ G + + ++
Sbjct: 45 FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW 104
Query: 97 -------GDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-----IENLIKYIKPNT 144
GD+II + + + ++G E+ + L +E L T
Sbjct: 105 GNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT 164
Query: 145 KMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLT 204
+++ I + +N L T + + + QH +LV + + D ++S
Sbjct: 165 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH 224
Query: 205 KYMNGH 210
K
Sbjct: 225 KLYGPT 230
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 47.4 bits (112), Expect = 2e-06
Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 24/235 (10%)
Query: 53 YSRSNNPTRRNLERCIASL--------EEAKHGLCYSSGLGAVTAVTHLLS---AGDHII 101
++ +N LE+ I L + ++ + + + LS
Sbjct: 94 FNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDA 153
Query: 102 SGDDVY--GGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159
V Y F + + N + P + + +P NP +
Sbjct: 154 PESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLL 212
Query: 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGAT 218
AV+K + D + +Y DI+L++++K+ HS G
Sbjct: 213 -----RHAVIK---GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTG-HSGSRFGWA 263
Query: 219 VTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFL 273
+ D+S+ L + LK + +K + ++ F
Sbjct: 264 LIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 46.3 bits (109), Expect = 4e-06
Identities = 37/244 (15%), Positives = 75/244 (30%), Gaps = 28/244 (11%)
Query: 64 LERCIASLEEAKHGLCYSS-----GLGAVTAVTHLLSA----GDHIISGDDVYGGTYRYF 114
L IA + +GLCY + G ++ +L+ A GD +I +
Sbjct: 72 LREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMV 131
Query: 115 AQVAPK---IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ 171
+ V+ E + + I P TK++ P+NP V+ + A+ +
Sbjct: 132 KLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQV 191
Query: 172 H--PDILLVLDNTFLTAYYQK--------SLPWGVD--IVLYSLTKYMNGHSDVVMGATV 219
+ ++ D + Y + P + +V K + +G
Sbjct: 192 AVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM-TGWRVGFLA 250
Query: 220 TNDDSLQARLKFLQNSMGVVPSPF---DCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH 276
++A K +S V + + L + L +
Sbjct: 251 GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM 310
Query: 277 PCVK 280
P ++
Sbjct: 311 PGLE 314
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 26/215 (12%), Positives = 53/215 (24%), Gaps = 11/215 (5%)
Query: 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-VTAVTHLLSAGDHIISGDDVYGGTYRYFA 115
P + + + A + L ++ ++ + +Y
Sbjct: 45 TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104
Query: 116 QVAPKIGLEVDFVDLRKIENL--------IKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167
+ I L + + I P + DVK I+
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164
Query: 168 VVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227
V ++ LLV + G D ++ S K M + G ++ +
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222
Query: 228 RLKFLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEH 262
L+ + C + TL
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHV 257
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 38.0 bits (87), Expect = 0.002
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 19/203 (9%)
Query: 97 GDHIISGDDVYGGTYRYFAQVAPK---IGLEVDFVDLRKIENLIKYIKPNTKMVWIENPT 153
GD I+ Y K + I+++ K I TK + + NP
Sbjct: 117 GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPN 176
Query: 154 NPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVD---------IVLYSLT 204
NP ++D K + ++ + + + + + IV+ L+
Sbjct: 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLS 236
Query: 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN---SMGVVPSPFDCWLVTRGLKT----LPC 257
K + + ++ + ++ + + + P+ + GL L
Sbjct: 237 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKE 296
Query: 258 RLKEHERGSIEVAKFLESHPCVK 280
+K+ + + K L P +
Sbjct: 297 YMKKLKERRDYIYKRLNEIPGIS 319
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 37.6 bits (86), Expect = 0.002
Identities = 36/381 (9%), Positives = 90/381 (23%), Gaps = 63/381 (16%)
Query: 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYF-- 114
+ +L+ L + + G GA LL + + +F
Sbjct: 74 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDT 133
Query: 115 -------------------AQVAPKIGLEVDFVDLRKIENLI-KYIKPNTKMVWIENPTN 154
A + D++K++ I ++ N + N
Sbjct: 134 TAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 193
Query: 155 PLMTVF----DVKAISAVVKQHPDILLVLD--NTFLTAYYQKSLP--------------W 194
++K + + KQH I +V+D AY+ K+
Sbjct: 194 SAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 252
Query: 195 GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKT 254
+++ + ++ + +++ + + M +
Sbjct: 253 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 312
Query: 255 LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314
E ++ L ++ V
Sbjct: 313 QGLEEGTEEEYLHYRIGQVKYL---------------GDRLREAGIPIQYPTGGHAVFVD 357
Query: 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPK--ETRDALGITDNLVRLSVG 372
++ + A E+ + + T + +RL++
Sbjct: 358 CKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA 417
Query: 373 VEGYTDLIADLDQALRKACKV 393
YT+ +D +
Sbjct: 418 RRVYTN--DHMDYIADALIGL 436
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 393 | |||
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.98 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.98 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.97 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.97 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.97 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.97 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.97 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.97 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.97 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.96 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.96 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.96 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.95 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.94 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.91 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.91 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.91 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.9 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.9 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.9 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.9 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.9 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.89 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.87 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.85 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.85 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.84 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.83 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.82 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.81 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.81 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.81 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.8 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.8 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.79 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.79 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.78 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.72 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.7 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.69 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.68 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.59 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.59 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.57 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.54 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.52 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.51 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.51 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.5 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.47 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.46 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.45 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.4 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.4 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.38 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.31 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.3 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.27 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.14 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.74 |
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-61 Score=442.90 Aligned_cols=382 Identities=39% Similarity=0.644 Sum_probs=362.5
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV 87 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al 87 (393)
+|++|+++|+|..+++.. ++..+|++++++|..+..+. ...+.|+|.++|....|+++||++.|.+.+++++||++|+
T Consensus 1 ~k~~T~~vh~G~~~~~~~-gav~pPI~~sst~~~~~~~~-~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi 78 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDDEQY-GCVVPPIHLSSTYNFTGFNE-PRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAI 78 (384)
T ss_dssp CCHHHHHHHTTTTCCTTT-CBSSCCBCCCSBBCCSBTTB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred CChhhheeeCCCCCCCCC-CCccCCccCCCCeecCCCCc-ccCCcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHH
Confidence 578999999999887655 58999999999998876665 4468899999999999999999999999999999999998
Q ss_pred -HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHH
Q psy12791 88 -TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAIS 166 (393)
Q Consensus 88 -~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~ 166 (393)
.++.+++++||+|++++..|++++..+...++..|.++.+++..|.+++++.+.++|++||+++|.||+..+.|+++|.
T Consensus 79 ~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~ 158 (384)
T d1cs1a_ 79 HLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC 158 (384)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHH
T ss_pred HHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccHHHHh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHH
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCW 246 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
++|+++ |+++|||++++.++.+.|+..|+||++.|.+|+++|...+.+|.++++++.+.+.++..+..+|...++.+++
T Consensus 159 ~ia~~~-g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ 237 (384)
T d1cs1a_ 159 HLAREV-GAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSY 237 (384)
T ss_dssp HHHHHT-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHH
T ss_pred hhhhhc-CcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHH
Confidence 999999 9999999999999999999999999999999999999999999999987888888888888899999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcC
Q psy12791 247 LVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLL 326 (393)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (393)
++.++++++..|++++.+|+.++++||+.+|.|++|.+|+++++++|.++.+.+.++|+++.|.+.++.+.+.+|++.|+
T Consensus 238 ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~ 317 (384)
T d1cs1a_ 238 LLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLS 317 (384)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCS
T ss_pred HHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 327 IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 327 ~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.+..+.++|+.+|++++|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||+++.+
T Consensus 318 l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~ 383 (384)
T d1cs1a_ 318 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANK 383 (384)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTC
T ss_pred cceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998754
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=4.7e-61 Score=444.52 Aligned_cols=383 Identities=40% Similarity=0.681 Sum_probs=355.8
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcE
Q psy12791 5 PQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHG 77 (393)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~ 77 (393)
+++-+|+|+++|+|..+++.. ++..+|++.+++|..+..+. -...+.|+|..+|....|+++||++.|.+.+
T Consensus 3 ~k~~~f~T~~ih~G~~~~~~~-g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a 81 (397)
T d1y4ia1 3 CRTYGFNTQIVHAGQQPDPST-GALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAG 81 (397)
T ss_dssp GGGSCHHHHHHHTTCCCCTTT-CCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCccceeEeCCCCCCCCC-CCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccc
Confidence 356789999999998876554 57889999999998654321 1345889999999999999999999999999
Q ss_pred EEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 78 LCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 78 i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
++++||+.|+ .++++++++||+|++++..|++++..+...+.++|+++.+++..|+++++++++++|++||+++|.||+
T Consensus 82 ~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~ 161 (397)
T d1y4ia1 82 LATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPT 161 (397)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred eeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCcccc
Confidence 9999999998 888899999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH--HHHH
Q psy12791 157 MTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK--FLQN 234 (393)
Q Consensus 157 G~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~--~~~~ 234 (393)
..+.|+++|.++|+++ |++++||++++.++.+.|+..|+|+++.|.+|+++|...+.+|.++++ ++.+.+++ ..+.
T Consensus 162 l~v~Di~~i~~iA~~~-gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~-~~~~~~~r~~~~~~ 239 (397)
T d1y4ia1 162 LSLVDIETVAGIAHQQ-GALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGK-QEFIDQARFVGLKD 239 (397)
T ss_dssp CCCCCHHHHHHHHHHT-TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTHHHH
T ss_pred eeecccHHHHHHhhcC-CceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCC-HHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999999999999999999999999999999999998 66555443 4566
Q ss_pred hcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 235 SMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
..|..++|.+++++.++++++..|++++.+|+.++++||+++|.|++|.+|+++++++|.++.+++.++|++++|.++++
T Consensus 240 ~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~ 319 (397)
T d1y4ia1 240 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG 319 (397)
T ss_dssp TTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred CcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+...+|+++|+.+..+.|+|+.+|++++|..++|..++.+.....|++++.||||+|.|+.|+++++|.+||++.
T Consensus 320 ~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a 395 (397)
T d1y4ia1 320 LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 395 (397)
T ss_dssp HHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=4.2e-61 Score=444.76 Aligned_cols=380 Identities=38% Similarity=0.640 Sum_probs=330.7
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCC-------CCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQP-------PQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
++|+|+++|+|..+++.. +++.+|++++++|..+..+.. ...+.|+|..+|....|+++||++.|.+.++++
T Consensus 2 ~g~~T~~vH~G~~~~~~~-g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~ 80 (392)
T d1gc0a_ 2 PGFATRAIHHGYDPQDHG-GALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 80 (392)
T ss_dssp CCHHHHHHHTTCCGGGGT-TBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCcchhceeCCCCCCCCC-CCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceeeh
Confidence 478999999998876654 588999999999987654321 335779999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+||+.|+ .++.+++++||+|++++..|++++..+...++.+|+++.+++..|+++++++++++|++|++++|.||+..+
T Consensus 81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v 160 (392)
T d1gc0a_ 81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM 160 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred hhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeee
Confidence 9999998 888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH--HHHHhcC
Q psy12791 160 FDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK--FLQNSMG 237 (393)
Q Consensus 160 ~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~--~~~~~~~ 237 (393)
.|+++|.++|+++ |++++||++++.+..+.|+++|+|+++.|.+|+++|...+.+|.++++ .+.+++++ ..+...|
T Consensus 161 ~Di~~i~~ia~~~-g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~-~~~~~~~r~~~~~~~~G 238 (392)
T d1gc0a_ 161 ADIAGVAKIARKH-GATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGS-QALVDRIRLQGLKDMTG 238 (392)
T ss_dssp CCHHHHHHHHGGG-TCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEEC-HHHHHHHHHTHHHHHTC
T ss_pred cchHHHHHHHHhc-CCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccch-hHHHHHHHHHHHHHccC
Confidence 9999999999999 999999999999999999999999999999999999999999999998 66665543 5566789
Q ss_pred CCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHH
Q psy12791 238 VVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEE 317 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (393)
..++|.+++++.++++++..|++++.+|+.++++||+++|.+++|.+|+++++++|.++.+.+.+.|++++|.++++.+.
T Consensus 239 ~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~ 318 (392)
T d1gc0a_ 239 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGA 318 (392)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHH
T ss_pred CcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777788
Q ss_pred HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 318 TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 318 ~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+|++.|+.+..+.|+|+.+|++++|+.++|..++.+.+...|++++.||||+|.|+.++++++|.+||++.
T Consensus 319 ~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa 391 (392)
T d1gc0a_ 319 GRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 391 (392)
T ss_dssp HHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.2e-59 Score=430.73 Aligned_cols=376 Identities=39% Similarity=0.705 Sum_probs=355.8
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHHHH
Q psy12791 10 FATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAVTA 89 (393)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al~~ 89 (393)
|+|.++|+|...+.. ++..+|++++++|..+.... ...+.|+|..+|....|+++||++.|.+++++++||++|+.+
T Consensus 3 ~~t~~~h~~~~~dp~--ga~~~PI~~sstf~~~~~~~-~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisa 79 (380)
T d1ibja_ 3 VSTLLVNLDNKFDPF--DAMSTPLYQTATFKQPSAIE-NGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA 79 (380)
T ss_dssp HHHHHTCCCCSSCTT--CCSSCCCCCCSBCCCSSSSC-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred HhHhhhcCCCCCCCC--CCccCCccCCcceecCCCCc-cCCceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHH
Confidence 678899999887663 47899999999998876555 456889999999999999999999999999999999999977
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHH
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV 169 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~ 169 (393)
++.++++||+|++..+.|++++..+.......|+++.+++..+.++++++++++|++||++.|.||+..+.|+++|.++|
T Consensus 80 ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA 159 (380)
T d1ibja_ 80 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMA 159 (380)
T ss_dssp HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred HHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12791 170 KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249 (393)
Q Consensus 170 ~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
+++ |+++|||++++.++.+.|+..|+|+++.|.+|+++|...+.+|.++.+++.+.+.++..+..+|..+++.+++++.
T Consensus 160 ~~~-g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~ 238 (380)
T d1ibja_ 160 HAQ-GALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCL 238 (380)
T ss_dssp HTT-TCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHH
T ss_pred HHc-CCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999887888899988888999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccc
Q psy12791 250 RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329 (393)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (393)
++++++..|++++.+|+.++++||+++|.|++|.+|++++++++.++.+.+.++++++.|.+ ++.+.+.+|+++++.+.
T Consensus 239 rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~-~~~~~a~~f~d~l~l~~ 317 (380)
T d1ibja_ 239 RGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-GSVALSKHLVETTKYFS 317 (380)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEEC-SCHHHHHHHHHHCSSSE
T ss_pred hcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccc-cHHHHHHHHHHhCCcCe
Confidence 99999999999999999999999999999999999999999999999999999999999988 68899999999999999
Q ss_pred cccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 330 ~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+.++|+.+|++++|+.++|..++.+++...|++++.||||+|.|+.|+++++|.+||+++
T Consensus 318 ~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 318 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTF 378 (380)
T ss_dssp ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999865
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=1.1e-58 Score=429.23 Aligned_cols=388 Identities=34% Similarity=0.543 Sum_probs=353.7
Q ss_pred CCCCCCCCCccceeeccCCCCCCC-CCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHh
Q psy12791 1 MSFLPQDTAFATKAVHIGSEPDQW-RSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLE 72 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~ 72 (393)
||.=+-.+..+|+++|+|...+.. ..++..+|++++++|..+..+ .-...+.|+|.++|....|+++||++.
T Consensus 1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE 80 (398)
T d1qgna_ 1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE 80 (398)
T ss_dssp -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred CCccccCCCCccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHh
Confidence 444333445689999999775432 225889999999999875421 113468899999999999999999999
Q ss_pred CCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHH-hhcCCCCcEEEEe
Q psy12791 73 EAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLI-KYIKPNTKMVWIE 150 (393)
Q Consensus 73 ~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~-~~l~~~~~~v~l~ 150 (393)
|.+.+++++||++|+ .++.+++++||+|++++..|++++..+...++..|+++.+++..+.++.. ....++|++||++
T Consensus 81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E 160 (398)
T d1qgna_ 81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE 160 (398)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEcc
Confidence 999999999999998 78888999999999999999999999999999999999999877665544 4556789999999
Q ss_pred cCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 151 NPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 151 ~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+|.||+..+.|+++|.++|+++ |+++|||++++.++.+.|+..|+|+++.|.+|+++|...+.+|.++.+ +++.+.++
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~-g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~-~~~~~~~~ 238 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEK-GALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIR 238 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHT-TCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHH
T ss_pred CccccccccchHHHHHHHHhhc-CCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcch-hhhhhhhh
Confidence 9999999999999999999999 999999999999999999999999999999999999999989988876 88889888
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEE
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFY 310 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (393)
.....+|...+|.++++++++++++..|++++.+|+..+++||+++|.|++|.||+++++++|.++.+++.++|+++.|.
T Consensus 239 ~~~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~ 318 (398)
T d1qgna_ 239 NLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFE 318 (398)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEE
T ss_pred hhcccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeee
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 311 VNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+.++.+.+.+|+++|+.+..+.++|+++|++++|..++|..++.++....|++++.||||+|.|+.|+++++|.+||+++
T Consensus 319 ~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 319 VDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398 (398)
T ss_dssp ESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred ecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence 98789999999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-58 Score=427.60 Aligned_cols=384 Identities=49% Similarity=0.802 Sum_probs=356.8
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccH
Q psy12791 4 LPQDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSG 83 (393)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G 83 (393)
|++..+|+|+++|+|..++. . ++..+|++++++|..+..+.....+.|+|.++|....|+++||++.|.+.+++++||
T Consensus 2 ~~~~~~f~T~~vHag~~~d~-~-gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSG 79 (393)
T d1n8pa_ 2 LQESDKFATKAIHAGEHVDV-H-GSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSG 79 (393)
T ss_dssp CCSSCCHHHHHHHTTCCCCS-S-CCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCH
T ss_pred CCCCCCcchheEECCCCCCC-C-CCccCCcCCCCceecCCcccccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEecCc
Confidence 78899999999999987753 3 578899999999998876665667899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHH
Q psy12791 84 LGAVTAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVK 163 (393)
Q Consensus 84 ~~al~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~ 163 (393)
++|+.+++.++++||+|+++...|++++..+...+.+.|+++.+++. +.+++++.++++|++||++.|.||+..+.|++
T Consensus 80 maAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~ 158 (393)
T d1n8pa_ 80 SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQ 158 (393)
T ss_dssp HHHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHH
T ss_pred hhHHHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhhcceeEecCcchhhhhccchh
Confidence 99986667788999999999999999999999999999999999874 56889999999999999999999999999999
Q ss_pred HHHHHHH----hCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCC
Q psy12791 164 AISAVVK----QHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVV 239 (393)
Q Consensus 164 ~l~~l~~----~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
+|.++++ ++ |+++|||++++.+..+.|+++|+||++.|.+|+++|...+.+|.++.+++.+.++++..+...|..
T Consensus 159 ~ia~~a~~~~~~~-g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~ 237 (393)
T d1n8pa_ 159 KVADLIKKHAAGQ-DVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAI 237 (393)
T ss_dssp HHHHHHHHHTTTT-TCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhhhhcccC-CceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCC
Confidence 9999999 56 899999999999999999999999999999999999999999999888788999999888899999
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhC-CCcceEeCCCCCCCcchHHHhhhcC--CCcceEEEEEcCCHH
Q psy12791 240 PSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWS--GTSGMLSFYVNGGAE 316 (393)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 316 (393)
++|.++++++++++++..|++++.+|+.++++||+.+ +.|.++.+|++++.+++.++.+.+. ++|++++|.++++.+
T Consensus 238 ~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~ 317 (393)
T d1n8pa_ 238 PSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAE 317 (393)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHH
T ss_pred CChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHH
Confidence 9999999999999999999999999999999999876 7899999999999999999988765 467899999987888
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+.+|++.|+.+..+.++|+.+|++++|..++|..++.+.+...|++++.||||+|.|+.|+++++|.+||++..
T Consensus 318 ~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~ 392 (393)
T d1n8pa_ 318 AASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999753
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=1e-57 Score=423.95 Aligned_cols=384 Identities=39% Similarity=0.654 Sum_probs=352.3
Q ss_pred CCCCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCCC-------CCCCccccCCCCchHHHHHHHHHHHhCCCcEE
Q psy12791 6 QDTAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPGQ-------PPQGFEYSRSNNPTRRNLERCIASLEEAKHGL 78 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i 78 (393)
++++.+|+++|+|..++. . ++..+|++.+++|..+..+. -...+.|+|..+|....|++.||++.|.+.++
T Consensus 1 ~~~~~~T~~vh~g~~~d~-~-gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~ 78 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQ-F-GAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACV 78 (394)
T ss_dssp CCCCHHHHHHHSSCCCCT-T-CCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHheeCCCCCCC-C-CCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCccee
Confidence 467889999999987654 3 58999999999998764211 13468899999999999999999999999999
Q ss_pred EeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcc
Q psy12791 79 CYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLM 157 (393)
Q Consensus 79 ~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG 157 (393)
+++||++|+ .++++++++||+|++++..|++++..+...+..+|+++.+++..|.+++++++++++++||++.|.||+.
T Consensus 79 ~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l 158 (394)
T d1e5ea_ 79 ATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTL 158 (394)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTC
T ss_pred eeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcce
Confidence 999999998 7889999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH--HHHh
Q psy12791 158 TVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF--LQNS 235 (393)
Q Consensus 158 ~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~--~~~~ 235 (393)
.+.|++++.+.+++.+++++|+|++++.+..+.|+..|+||++.|.+|+++|...+.+|.++++ .+.....+. .+..
T Consensus 159 ~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~-~~~~~~~~~~~~~~~ 237 (394)
T d1e5ea_ 159 KIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVGIKDI 237 (394)
T ss_dssp CCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTCCCCC
T ss_pred eeehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccch-hhHHHHHHHHHHHHh
Confidence 9999999988776533899999999999999999999999999999999999999999999987 666655443 2345
Q ss_pred cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 236 MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
.|..++|.+++++.++++++..|++++.+|+..+++||+++|.|++|.+|+++++++|.++.+.+.++|+++.|.+.++.
T Consensus 238 ~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~ 317 (394)
T d1e5ea_ 238 TGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGF 317 (394)
T ss_dssp CCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred hCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
+.+.+|+++++.+..+.|+|+++|++++|+.++|..++.+++...|++++.||||+|.|+.|+++++|.+||+++.+
T Consensus 318 ~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 318 EGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 394 (394)
T ss_dssp HHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHhhC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998754
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-57 Score=421.99 Aligned_cols=378 Identities=33% Similarity=0.561 Sum_probs=341.1
Q ss_pred CCccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC-------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 8 TAFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG-------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
+||+|+++|+|..+++.. ++..+|++++++|..+..+ .-...+.|+|..+|....|+++||++.|.+.++++
T Consensus 1 mk~~T~~vh~g~~~~~~~-gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~ 79 (421)
T d2ctza1 1 MRFETLQLHAGYEPEPTT-LSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALAT 79 (421)
T ss_dssp CCHHHHHHHTTCCCCTTT-CBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CChhHhheeCCCCCCCCC-CCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 468999999999886654 5889999999999875422 11335789999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCC-HHHHHhhcCCCCcEEEEecCCCCccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRK-IENLIKYIKPNTKMVWIENPTNPLMT 158 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d-~~~l~~~l~~~~~~v~l~~p~nptG~ 158 (393)
+||++|+ .++++++++||+|++++..|++++..+...+..+|+++.+++..+ .+..++.++++|++||+++|.||+..
T Consensus 80 ~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~ 159 (421)
T d2ctza1 80 ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALN 159 (421)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred cChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeE
Confidence 9999998 888999999999999999999999999999999999999998754 56677778889999999999999999
Q ss_pred ccCHHHHHHHHHhCCCcEEEEeCccC-cccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChH-------------
Q psy12791 159 VFDVKAISAVVKQHPDILLVLDNTFL-TAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS------------- 224 (393)
Q Consensus 159 ~~~~~~l~~l~~~~~~~~livDea~~-~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~------------- 224 (393)
+.|+++|.++|+++ |+++|||++++ .++.+.|+..|+||++.|.+|+++|...+.+|.++.++..
T Consensus 160 v~Di~~i~~iA~~~-g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~ 238 (421)
T d2ctza1 160 IPDLEALAQAAREK-GVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP 238 (421)
T ss_dssp CCCHHHHHHHHHHH-TCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred ecchHHHHHHHHhc-CCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCC
Confidence 99999999999999 99999999998 6788899999999999999999999999999999975321
Q ss_pred -----------------HHHHHH-HHHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCC
Q psy12791 225 -----------------LQARLK-FLQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPG 286 (393)
Q Consensus 225 -----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~ 286 (393)
++.+++ .....+|..++|.+++++.++++++..|++++.+|+..+++||+.+|.|++|.+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPg 318 (421)
T d2ctza1 239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG 318 (421)
T ss_dssp BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred chhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCC
Confidence 111111 22334799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhcCC-CcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCC
Q psy12791 287 LPSHPNHELAKSQWSG-TSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDN 365 (393)
Q Consensus 287 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~ 365 (393)
++++++|.++.+.+.+ +|++++|.++++.+.+.+|++.|+.+..+.|+|+.+|++++|..++|..++.++...+|++++
T Consensus 319 L~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~ 398 (421)
T d2ctza1 319 LPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE 398 (421)
T ss_dssp STTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred cCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcC
Confidence 9999999999998875 688999999777888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCChHHHHHHHHHHH
Q psy12791 366 LVRLSVGVEGYTDLIADLDQAL 387 (393)
Q Consensus 366 ~iRls~~~~~~~~~i~~l~~al 387 (393)
.||||+|.|+.|+++++|.+||
T Consensus 399 liRlSvGlEd~eDLi~DL~qAL 420 (421)
T d2ctza1 399 MVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp EEEEECCSSCHHHHHHHHHHHT
T ss_pred eEEEEeccCCHHHHHHHHHHhc
Confidence 9999999999999999999987
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-56 Score=411.61 Aligned_cols=378 Identities=29% Similarity=0.499 Sum_probs=343.5
Q ss_pred CccceeeccCCCCCCCCCCCCCCCCccCCeeeeCCCC--------CCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEe
Q psy12791 9 AFATKAVHIGSEPDQWRSQCVIPPIILSTTFKQNTPG--------QPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCY 80 (393)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~ 80 (393)
||+|+++|+|..++... ++..+|++++++|..+..+ .....+.|+|..+|....|++.+|++.|.+.++++
T Consensus 1 k~~T~~vh~g~~~~~~~-g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~ 79 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKKYTL-GAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLF 79 (391)
T ss_dssp CHHHHHHHTTCCHHHHT-TBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcccceecCCCCCCCCC-CCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEe
Confidence 68899999998876544 5889999999999765321 11234789999999999999999999999999999
Q ss_pred ccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccc
Q psy12791 81 SSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTV 159 (393)
Q Consensus 81 ~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~ 159 (393)
+||++|+ .++++++++||+|+++...|++|+..+...+...|+++.+++..|.+++++++++++++|++++|.||+..+
T Consensus 80 ~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v 159 (391)
T d1cl1a_ 80 PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEV 159 (391)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCC
T ss_pred ccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCcccccc
Confidence 9999998 788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC
Q psy12791 160 FDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 160 ~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
.|++++.++|+++ +|+++|||++++.++.+.|++.|+|+++.|.+|+++|...+.+|.++.+ +++.+.+.......|.
T Consensus 160 ~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~-~~~~~~~~~~~~~~G~ 238 (391)
T d1cl1a_ 160 HDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN-ARCWEQLRENAYLMGQ 238 (391)
T ss_dssp CCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEEC-TTTHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecc-ccccccchhhhhcccc
Confidence 9999999999763 3999999999999999999999999999999999999999999999887 7777888888888899
Q ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--CHH
Q psy12791 239 VPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAE 316 (393)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 316 (393)
..+|.+++++.++++++..|++++.+|+.++++||+++|.+.+|.+|++++++++.++.+.+.++++++.|.+.+ +.+
T Consensus 239 ~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e 318 (391)
T d1cl1a_ 239 MVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNE 318 (391)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHH
T ss_pred cCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 678
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+..+|+++|+.+..+.++|+.+|++++|..+.+.....+ ...|++++.||||+|.|+.|+++++|.+||+++
T Consensus 319 ~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 319 ELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 390 (391)
T ss_dssp HHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcceEeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence 889999999999999999999999988776665544322 346888999999999999999999999999986
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=100.00 E-value=3e-51 Score=373.01 Aligned_cols=325 Identities=45% Similarity=0.703 Sum_probs=305.2
Q ss_pred HHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcC
Q psy12791 63 NLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIK 141 (393)
Q Consensus 63 ~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~ 141 (393)
.|++++|++.|.+.+++++||++|+ .++++++++||+|++++..|++++..+...++.+|+++.+++..|++.++++++
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~ 81 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence 5899999999999999999999998 888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCcccccCHHHHHHHH-HhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccCCCCceEEEEEe
Q psy12791 142 PNTKMVWIENPTNPLMTVFDVKAISAVV-KQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNGHSDVVMGATVT 220 (393)
Q Consensus 142 ~~~~~v~l~~p~nptG~~~~~~~l~~l~-~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~ 220 (393)
++|++|+++.|.||+..+.|++.+.+++ +++ ++++|+|++++.++.+.|++.|+|+++.|.+|+++|.....+|.++.
T Consensus 82 ~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~-~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~ 160 (331)
T d1pffa_ 82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQK-DILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS 160 (331)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS-SCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred cccceeeeecccccccccccchhhhhhhhccc-CceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccc
Confidence 9999999999999999999999999885 567 99999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHH--HHHhcCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhh
Q psy12791 221 NDDSLQARLKF--LQNSMGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKS 298 (393)
Q Consensus 221 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~ 298 (393)
+ ++.....+. .....|..++|.+++++.++++++..|++++.+|+..+++||+++|.|++|.||+++++++|.++.+
T Consensus 161 ~-~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~ 239 (331)
T d1pffa_ 161 R-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKK 239 (331)
T ss_dssp C-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHH
T ss_pred c-ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhh
Confidence 7 555544432 2345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHH
Q psy12791 299 QWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTD 378 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~ 378 (393)
.+.++|++++|.+. +.+.+.+|+++++.+..+.++|+.+|++++|..++|..++.++....|++++.||||+|.|+.|+
T Consensus 240 ~~~~~g~l~sf~l~-~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~D 318 (331)
T d1pffa_ 240 QMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQD 318 (331)
T ss_dssp HCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred cccccCcccceeec-cHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHH
Confidence 99999999999994 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy12791 379 LIADLDQALRKA 390 (393)
Q Consensus 379 ~i~~l~~al~~~ 390 (393)
++++|.+||+++
T Consensus 319 Li~Dl~~AL~~i 330 (331)
T d1pffa_ 319 IIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4e-37 Score=286.56 Aligned_cols=328 Identities=18% Similarity=0.183 Sum_probs=238.6
Q ss_pred CCCCccceeeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH
Q psy12791 6 QDTAFATKAVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG 83 (393)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G 83 (393)
||+++...+...|..|.+++| |+|+||+++|+...+++.+.. ....+||++...+||+++|++++.+ +.|++++|
T Consensus 6 hgg~~~~~~~~~g~~p~~~idls~~~np~~~p~~~~~a~~~~~---~~~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g 82 (355)
T d1lc5a_ 6 HGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNL---DCIERYPDADYFHLHQALARHHQVPASWILAGNG 82 (355)
T ss_dssp SSCCCHHHHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTG---GGGGSCCCTTCHHHHHHHHHHHTSCGGGEEEESS
T ss_pred CCCHHHHHHHHhCCChhheEEccCCCCCCCCCHHHHHHHHHHH---HHhccCCCCChHHHHHHHHHHhCCCHHHEEeccc
Confidence 677888888889999999999 999999999988887776552 3456678888899999999999987 68999999
Q ss_pred HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCc
Q psy12791 84 LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPL 156 (393)
Q Consensus 84 ~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~npt 156 (393)
+++. .++...+. ++.+++..|.|. .|.......+.+++.++++ ..+.+.+.+.+++++|++++|||||
T Consensus 83 ~~~~~~~~~~~~~-~~~~~v~~p~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPt 157 (355)
T d1lc5a_ 83 ETESIFTVASGLK-PRRAMIVTPGFA----EYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPT 157 (355)
T ss_dssp HHHHHHHHHHHHC-CSEEEEEESCCT----HHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTT
T ss_pred HHHHHHHHHhhhc-cccccccCCccc----eeccccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcc
Confidence 9884 55554444 455666778887 3566666778888888764 2345666778889999999999999
Q ss_pred ccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHH
Q psy12791 157 MTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQA 227 (393)
Q Consensus 157 G~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~ 227 (393)
|.+++ +++|.++|+++ ++++|+||+|..+..... ...+..++++|+||.+ |++|+|+||++++++.+.+
T Consensus 158 G~~~~~e~l~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~ 235 (355)
T d1lc5a_ 158 GLLPERPLLQAIADRCKSL-NINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMA 235 (355)
T ss_dssp CCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHH
T ss_pred cccchhhhhhhhhhhcccc-ccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhH
Confidence 99998 55777788899 999999999987654321 1135679999999999 7999999999998666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 228 RLKFLQNSMGVVPSPFDCWLVTRGLKT---LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
.++.... ....+...+..+...++. +...+++..++.+.+.+.|.+.+.+. ..|. .+
T Consensus 236 ~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~----------------~~ 295 (355)
T d1lc5a_ 236 RMRRQQM--PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT--VYPG----------------RA 295 (355)
T ss_dssp HHHHHSC--TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--ECCC----------------SS
T ss_pred HHHhhcC--CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE--ECCC----------------CC
Confidence 6654433 234456666666666654 44456666777788888888776653 2343 25
Q ss_pred ceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLD 384 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~ 384 (393)
.++++.++.+. ..+.+.|...++.+..|..+. +..+++||||++ ++++.+++.
T Consensus 296 ~f~~~~~~~~~---~~~~~~L~~~gv~vr~~~~f~---------------------~~~~~~iRis~~---~~~e~~~li 348 (355)
T d1lc5a_ 296 NYLLLRCERED---IDLQRRLLTQRILIRSCANYP---------------------GLDSRYYRVAIR---SAAQNERLL 348 (355)
T ss_dssp SEEEEEESCTT---CCHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECC---CHHHHHHHH
T ss_pred EEEEEECCCCH---HHHHHHHHHCCcEEEeCccCC---------------------CCCCCEEEEEeC---CHHHHHHHH
Confidence 67899885322 223444444456665544321 122689999997 456678888
Q ss_pred HHHHHh
Q psy12791 385 QALRKA 390 (393)
Q Consensus 385 ~al~~~ 390 (393)
++|+++
T Consensus 349 ~aL~~i 354 (355)
T d1lc5a_ 349 AALRNV 354 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.3e-35 Score=270.96 Aligned_cols=298 Identities=17% Similarity=0.214 Sum_probs=213.9
Q ss_pred CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCC-eEEE
Q psy12791 27 QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGD-HIIS 102 (393)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd-~vl~ 102 (393)
++|+||+++++.+..+. ..|||++...+||++||+++|++ ++|++|+|+++ + .++.+++++|| .|++
T Consensus 33 ~~ne~p~~~~~~~~~~~---------l~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~ 103 (354)
T d1fg7a_ 33 NANEYPTAVEFQLTQQT---------LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILY 103 (354)
T ss_dssp SSCCCSSCCCCCCCCCC---------TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEE
T ss_pred eCCCCCCCCCHHHHHHH---------HhcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccc
Confidence 58999999886554432 35778898999999999999987 89999999987 6 77778899998 5888
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHh--CCCc
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQ--HPDI 175 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~--~~~~ 175 (393)
+.|+|. .|...++..|.+++.++.+ |+++++..+. ++++|++++||||||.+++.+++..++.. + +.
T Consensus 104 ~~P~y~----~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~-~~ 177 (354)
T d1fg7a_ 104 CPPTYG----MYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KA 177 (354)
T ss_dssp CSSSCT----HHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT-TC
T ss_pred cccccc----cchhhhhccCceeeccccccccccchhhhhhccc-ccceeeccCCCccceeEeeecccccccccccc-cc
Confidence 999998 5777888899999998865 6888888764 79999999999999999996665554443 4 78
Q ss_pred EEEEeCccCcccccCCC-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q psy12791 176 LLVLDNTFLTAYYQKSL-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTR 250 (393)
Q Consensus 176 ~livDea~~~~~~~~~~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
++|+||+|.++...... ...+.++++||||.+ |++|+|+||++++ +++++.+.+....+.. +...+..+..
T Consensus 178 ~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~-~laGlRiGy~i~~-~~~i~~l~~~~~~~~~--~~~~~~~a~~ 253 (354)
T d1fg7a_ 178 IVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLAN-EEVINLLMKVIAPYPL--STPVADIAAQ 253 (354)
T ss_dssp EEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEEC-HHHHHHHHHHSCSSCS--CHHHHHHHHH
T ss_pred cccccccchhhccccccchhhcccccceEEeCCcccc-CCCcccccccccc-chhhhhhhhhcCccch--hhHHHHHHHH
Confidence 89999999876543221 235679999999999 7999999999997 8888888765543332 2322222222
Q ss_pred ccC-----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc
Q psy12791 251 GLK-----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL 325 (393)
Q Consensus 251 ~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (393)
.+. ....+.++..+++..+.+.+..++.+..+ .|. .+.++++.++ +.+ .+.+.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~-~p~----------------~~~f~~~~~~-~~~---~~~~~L 312 (354)
T d1fg7a_ 254 ALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV-FDS----------------ETNYILARFK-ASS---AVFKSL 312 (354)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE-CCC----------------SSSEEEEEET-THH---HHHHHH
T ss_pred HHhhhccccccccchhhhhHHHHHHHHHHhCCCccee-CCC----------------CceEEEEeCC-CHH---HHHHHH
Confidence 221 12334455566777788888888776543 333 2568999995 333 233444
Q ss_pred CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 326 LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 326 ~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
...++.+..++.+. + -++++|+|++ +.++.+++.++|++
T Consensus 313 ~~~gIlvr~~~~~~---------------------~-~~~~lRisig---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 313 WDQGIILRDQNKQP---------------------S-LSGCLRITVG---TREESQRVIDALRA 351 (354)
T ss_dssp HHTTEECEECTTST---------------------T-CTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHCCcEEecCCCCC---------------------C-CCCEEEEEeC---CHHHHHHHHHHHhh
Confidence 33355554433221 1 1589999997 45567888888874
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=8.5e-35 Score=273.67 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=187.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCC-CCchHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRS-NNPTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~ 91 (393)
++++ +.+++++.+|+.+.+++.+.+.. .+.+| +..+..+||+++|+++ |. +++|++|+|+++ + .++.
T Consensus 31 ~vi~l~~G~p~~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 108 (388)
T d1j32a_ 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQ--GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLML 108 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHH
Confidence 6777 66777776666666554332211 12334 3457788999999875 33 278999999876 7 6677
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+++++||.|++++|+|.. |...++..|.+++.++.. |++++++.+.++++++++++||||||.+++
T Consensus 109 ~~~~~gd~Vlv~~P~y~~----~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~ 184 (388)
T d1j32a_ 109 AMIEPGDEVIIPAPFWVS----YPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDE 184 (388)
T ss_dssp HHCCTTCEEEEESSCCTH----HHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HHhCCCCEEEEcCCCcHH----HHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhh
Confidence 889999999999999984 667778889998888763 789999999999999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCCC--C--------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKSL--P--------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKF 231 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~~--~--------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~ 231 (393)
+++|.++|+++ +++||+||+|..+.++.+. . .++.+++.|+||.+ |+||+|+||++++ +++++.+..
T Consensus 185 ~~~l~~~~~~~-~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~-~~~~~~~~~ 261 (388)
T d1j32a_ 185 VRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGP-VPLVKAATK 261 (388)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECC-HHHHHHHHH
T ss_pred hhhhhcccccC-CeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEEC-HHHHHHHHH
Confidence 77788889999 9999999999876654221 1 13569999999999 6999999999997 888888776
Q ss_pred HHHhcCCCCCHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 232 LQNSMGVVPSPFDCWLVTRGL----KTLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
.........+...+..+...+ +.+...++.+.++...+.+.|++++++.
T Consensus 262 ~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 314 (388)
T d1j32a_ 262 IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE 314 (388)
T ss_dssp HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCB
T ss_pred hhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 666555555555544333322 2345566677788888889998776643
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-34 Score=268.32 Aligned_cols=315 Identities=16% Similarity=0.166 Sum_probs=215.6
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHh----C--CC-cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLE----E--AK-HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~----~--~~-~~i~~~~G~~a-l-~~~~ 91 (393)
++++ +...+++.+|+.+.+++.+.+. ..+.|+ +..+..+||+++++++ + .+ +.|++|+|++. + .++.
T Consensus 32 ~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~--~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 109 (382)
T d1b5pa_ 32 DLVALTAGEPDFDTPEHVKEAARRALAQGKTKYA--PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQ 109 (382)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCC--CTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCC--CCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHH
Confidence 5677 6666666666665554433221 123343 3456889999999986 3 33 78888998775 7 7777
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+++++||.|++++|+|++ |...++..|.+++.++.. |++++++.+.++++++++++||||||.+++
T Consensus 110 ~l~~~gd~vl~~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~ 185 (382)
T d1b5pa_ 110 AILDPGDEVIVLSPYWVS----YPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEV 185 (382)
T ss_dssp HHCCTTCEEEEEESCCTH----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HhCCCCCEEEECCCCcHH----HHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHH
Confidence 899999999999999984 777788899999998763 899999999989999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCC-C-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKS-L-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS 235 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~-~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~ 235 (393)
+++|.++|+++ +++||+||+|.++.+... . .....+++.|+||.+ |.||+|+||++++ +++++.+......
T Consensus 186 ~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlR~G~~~~~-~~~i~~~~~~~~~ 262 (382)
T d1b5pa_ 186 LEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGP-KEVIKAMASVSRQ 262 (382)
T ss_dssp HHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhc-cCcHhheEEEEEC-HHHHHHHHHHHHh
Confidence 77788889999 999999999998665321 1 124569999999999 6999999999997 8888887766665
Q ss_pred cCCCCCHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 236 MGVVPSPFDCWLVTRGLKT-------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
.....+...+..+...+.. ....++.+.+++..+.+.+.... +. +..|. .+.++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~-~~~p~----------------gg~~~~ 324 (382)
T d1b5pa_ 263 STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG-LK-AVRPS----------------GAFYVL 324 (382)
T ss_dssp TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CC-BCCCS----------------BTTEEE
T ss_pred cccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC-Ce-EecCC----------------ceEEEe
Confidence 5555555444333322211 12223334444555555565432 22 22222 245689
Q ss_pred EEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 309 FYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
+.+.+...+...+.+.+...++.+.+|..|. .++++|++++. ..+ .+.++++
T Consensus 325 ~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~-----------------------~~~~iRis~~~-~~e----~l~~al~ 376 (382)
T d1b5pa_ 325 MDTSPIAPDEVRAAERLLEAGVAVVPGTDFA-----------------------AFGHVRLSYAT-SEE----NLRKALE 376 (382)
T ss_dssp EECTTTCSSHHHHHHHHHHTTEECEESGGGT-----------------------CTTEEEEECCS-CHH----HHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHCCEEEEeCcccC-----------------------CCCeEEEEEcC-CHH----HHHHHHH
Confidence 8885322223334444444567777765542 15799999974 332 4556666
Q ss_pred Hhhc
Q psy12791 389 KACK 392 (393)
Q Consensus 389 ~~~~ 392 (393)
++.+
T Consensus 377 rl~~ 380 (382)
T d1b5pa_ 377 RFAR 380 (382)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 6654
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.6e-34 Score=272.12 Aligned_cols=320 Identities=18% Similarity=0.207 Sum_probs=216.7
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHhC-------C-CcEEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLEE-------A-KHGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~~-------~-~~~i~~~~G~~a-l-~~ 89 (393)
.++++ +.+++++.+|+.+.+.+.+.+.. ...|+ +..+..+||+++|+++. . ++.|++|+|+++ + .+
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~ 102 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYG--PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 102 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCC--CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCC--CCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHH
Confidence 45777 77777777776666555433221 22343 34578899999999853 2 257888888776 6 66
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC-
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~- 161 (393)
+.+++++||.|+++.|+|.. |...++..|.+++.++.+ |++++++.+.++++++++++||||||.+++
T Consensus 103 ~~~l~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~ 178 (388)
T d1gdea_ 103 LSAFLKDGEEVLIPTPAFVS----YAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTK 178 (388)
T ss_dssp HTTTCCTTCEEEEEESCCTT----HHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred HHHhcCCCCEEEECCCCcHH----HHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCH
Confidence 67889999999999999985 677788899999999873 789999999999999999999999999998
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccCC----C-----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQKS----L-----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK 230 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~~----~-----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~ 230 (393)
+++|.++|+++ +++||+||+|.++.+... + ..++.++++||||.+ |+||+|+||++++ +++.+.+.
T Consensus 179 ~~~~~l~~~a~~~-~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~~-~~~~~~~~ 255 (388)
T d1gdea_ 179 KDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAP-SWIIERMV 255 (388)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEee-ccchhhhh
Confidence 66788889999 999999999998654321 1 124579999999999 6999999999998 88888887
Q ss_pred HHHHhcCCCCCHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCc
Q psy12791 231 FLQNSMGVVPSPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTS 304 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 304 (393)
..........+...+..+...++. +....+.+.++...+.+.|..... . +..|. .+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~p~----------------gg 317 (388)
T d1gdea_ 256 KFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGL-P-TVKPK----------------GA 317 (388)
T ss_dssp HHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCC----------------BT
T ss_pred hccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccc-c-ccCCC----------------ce
Confidence 766666666666555544444433 222233344455556666654321 1 11122 24
Q ss_pred ceEEEEEcCCHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC--hHHHHH
Q psy12791 305 GMLSFYVNGGAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG--YTDLIA 381 (393)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~--~~~~i~ 381 (393)
.++|+.+++.....+.+.+. ++..++.+.+|..|... .++++|+|++... .++-++
T Consensus 318 ~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~---------------------~~~~iRis~~~~~e~l~~al~ 376 (388)
T d1gdea_ 318 FYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA---------------------GEGYVRISYATAYEKLEEAMD 376 (388)
T ss_dssp TEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG---------------------GTTBEEEECCSCHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCC---------------------CCCEEEEEecCCHHHHHHHHH
Confidence 56888875311122233333 23345666666544211 1589999998421 223345
Q ss_pred HHHHHHHH
Q psy12791 382 DLDQALRK 389 (393)
Q Consensus 382 ~l~~al~~ 389 (393)
++.++|++
T Consensus 377 rL~~~l~e 384 (388)
T d1gdea_ 377 RMERVLKE 384 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.3e-34 Score=262.36 Aligned_cols=310 Identities=15% Similarity=0.124 Sum_probs=219.6
Q ss_pred eeccCCCCCCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC----CcEEEeccHHHH-H
Q psy12791 14 AVHIGSEPDQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEA----KHGLCYSSGLGA-V 87 (393)
Q Consensus 14 ~~~~g~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~----~~~i~~~~G~~a-l 87 (393)
|.....++.++++ +.|+||+.+|+.+.+++.+.+.. ..+.+||+++..+||+++|++++. +++|++|+|+++ +
T Consensus 11 ~~~~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~-~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l 89 (334)
T d2f8ja1 11 AYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNS-DALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII 89 (334)
T ss_dssp SCCCCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCT-TGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred cccccccCCCceEEECCCCCCCCCHHHHHHHHHHhhc-chhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence 3344445567887 89999999888776665444322 345556778889999999999873 378999999887 5
Q ss_pred HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHH
Q psy12791 88 TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISA 167 (393)
Q Consensus 88 ~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 167 (393)
.++ +++||+|++++|+|+. |...++..|++++.+|.++-....+...++++++++++||||||.+++.++|.+
T Consensus 90 ~~l---~~~~d~v~i~~P~y~~----~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~ 162 (334)
T d2f8ja1 90 YVM---MLMFDRSVFFPPTYSC----YRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIER 162 (334)
T ss_dssp HHH---HHHSSEEEECSSCCHH----HHHHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHH---hhhccccccccccccc----cccchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhhc
Confidence 433 3457999999999984 677788899999999986322222334467899999999999999999999888
Q ss_pred HHHhCCCcEEEEeCccCcccccC----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHH
Q psy12791 168 VVKQHPDILLVLDNTFLTAYYQK----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPF 243 (393)
Q Consensus 168 l~~~~~~~~livDea~~~~~~~~----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
+++ + ++++|+||+|..+.... ....+..++++|+||.+ |.+|+|+||++++ +.+++++......+ ..+..
T Consensus 163 ~~~-~-~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~-~~~i~~l~~~~~~~--~~s~~ 236 (334)
T d2f8ja1 163 ILK-T-GAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVAS-EKFIDAYNRVRLPF--NVSYV 236 (334)
T ss_dssp HHT-T-TCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEEC-HHHHHHHHHHSCTT--CSCHH
T ss_pred ccc-c-eeEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccc-hHHHHHHHHhhccc--ccchh
Confidence 654 6 79999999997643321 12235679999999999 6999999999997 88988887665433 33444
Q ss_pred HHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 244 DCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 244 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
.+..+...+ +.+...++.+.++++.+.+.|++++ +. +. |. .|+++++.++ ....+.
T Consensus 237 ~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~-~~-~~----------------~g~f~~~~~~--~~~~~~ 295 (334)
T d2f8ja1 237 SQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-YR-IT-DS----------------RGNFVFVFME--KEEKER 295 (334)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-CE-EC-CC----------------CSSEEEEECC--HHHHHH
T ss_pred hhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC-Ce-EC-CC----------------CceEEEEECC--CCCHHH
Confidence 443333332 3344556677778888888888753 22 22 22 2567888773 346677
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHH
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRK 389 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 389 (393)
+.+.|...++.+.. -+++||+|++ +.++.+++.++|++
T Consensus 296 ~~~~L~~~GI~vr~----------------------------~~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 296 LLEHLRTKNVAVRS----------------------------FREGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp HHHHHHHTTEECEE----------------------------ETTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEECC----------------------------CCCeEEEEcC---CHHHHHHHHHHHhc
Confidence 77777655554421 0579999987 34456778777764
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.1e-32 Score=252.47 Aligned_cols=312 Identities=17% Similarity=0.145 Sum_probs=216.3
Q ss_pred CCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHHhcCCCCe
Q psy12791 24 WRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTHLLSAGDH 99 (393)
Q Consensus 24 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~~~~~gd~ 99 (393)
.|| |...+-+.+++.+.+++.+.+...+.|+ +..+..+||+++|++++.+ ++|++|+|+++ + .++..++.+||.
T Consensus 27 ~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~--~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~ 104 (368)
T d1v2da_ 27 AVNLGQGFPSNPPPPFLLEAVRRALGRQDQYA--PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDE 104 (368)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTTSCSCC--CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCE
T ss_pred CEEecCCCCCCCCCHHHHHHHHHHhhcccCCC--CCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhcccccccc
Confidence 466 4444334455556655544433333343 2346889999999999987 78888888776 7 777788999999
Q ss_pred EEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHH
Q psy12791 100 IISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAV 168 (393)
Q Consensus 100 vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l 168 (393)
|++++|+|.. +...++..|.+++.++.+ |++++++.+.++++++++++||||||.+++ +++|.++
T Consensus 105 v~~~~p~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~ 180 (368)
T d1v2da_ 105 VVVLEPFFDV----YLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180 (368)
T ss_dssp EEEEESCCTT----HHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred ccccCCcchh----hhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHH
Confidence 9999999985 556667788888777653 789999999999999999999999999998 7778888
Q ss_pred HHhCCCcEEEEeCccCcccccCCCC------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCH
Q psy12791 169 VKQHPDILLVLDNTFLTAYYQKSLP------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSP 242 (393)
Q Consensus 169 ~~~~~~~~livDea~~~~~~~~~~~------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (393)
|+++ ++++|+|++|.......... ....+++.|+||.+ |++|+|+||++++ +++.+.+...........+.
T Consensus 181 a~~~-~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~~G~R~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (368)
T d1v2da_ 181 ARAH-DLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGP-KEFMPRLAGMRQWTSFSAPT 257 (368)
T ss_dssp HHHT-TCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECC-TTTHHHHHHHHHHHTSSCCH
T ss_pred HHHc-CCeeeechhhhhhcccccccccccccccccceeecccccc-ccccccccccccc-ccccchhhhhhhcccccccc
Confidence 9999 99999999998755433222 24568899999998 6999999999997 78888887777666666655
Q ss_pred HHHHHHHhc------cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH
Q psy12791 243 FDCWLVTRG------LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE 316 (393)
Q Consensus 243 ~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
..+..+... .+.+...++.+.++...+.+.|+.+ ++. +..|. .+.++|+.+++ .
T Consensus 258 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~p~----------------g~~~~~~~l~~--~ 317 (368)
T d1v2da_ 258 PLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR-VYVPE----------------GTYFLMAELPG--W 317 (368)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-EECCS----------------BSSEEEEECTT--C
T ss_pred ccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcE-EecCC----------------ceeEEEEeCCc--c
Confidence 543322222 1234445555677778888888876 333 33232 24578888854 2
Q ss_pred HHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHH
Q psy12791 317 ETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALR 388 (393)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 388 (393)
+..+++++ .++.+.+|..|+... ..+++||+|++. +++.++...+.|+
T Consensus 318 ~~~~ll~~---~gI~v~pg~~F~~~~-------------------~~~~~iRis~~~--~~e~i~~ai~rL~ 365 (368)
T d1v2da_ 318 DAFRLVEE---ARVALIPASAFYLED-------------------PPKDLFRFAFCK--TEEELHLALERLG 365 (368)
T ss_dssp CHHHHHHH---TCEECEEGGGGCSSS-------------------CCTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCEEEEechhhCCCC-------------------CCCCEEEEEecC--CHHHHHHHHHHHH
Confidence 33445543 355566665543221 126899999973 3443333333333
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.98 E-value=4.2e-32 Score=255.75 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=197.1
Q ss_pred CCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CCC---cEEEeccHHHH-H-HHHHHhcCCCCeEE
Q psy12791 32 PIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EAK---HGLCYSSGLGA-V-TAVTHLLSAGDHII 101 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~~---~~i~~~~G~~a-l-~~~~~~~~~gd~vl 101 (393)
++.+|+.+.+++.+.+.. .+.|+ +..+..+||+++|+++ |.+ +++++++|+++ + .++..++.+||.|+
T Consensus 44 df~~p~~i~~a~~~a~~~~~~~Y~--~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vl 121 (395)
T d1xi9a_ 44 DFQPPEHMKEAYCKAIKEGHNYYG--DSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEIL 121 (395)
T ss_dssp TCCCCHHHHHHHHHHHHTTCCSCC--CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCC--CCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEE
Confidence 455555555544333222 22343 2356789999999875 432 68888888776 6 77778899999999
Q ss_pred EcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHh
Q psy12791 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQ 171 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~ 171 (393)
+++|+|+ .|...++..|.+++.++.. |++++++.+.++++++++++||||||.+++ +++|.++|++
T Consensus 122 v~~P~y~----~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~ 197 (395)
T d1xi9a_ 122 VPGPSYP----PYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGE 197 (395)
T ss_dssp EEESCCH----HHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred EcCCccc----cchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhh
Confidence 9999998 4777788899999888753 789999999889999999999999999998 6788888999
Q ss_pred CCCcEEEEeCccCcccccCCCC-------CcCcEEEEcccccccCCCCceEEEEEecCh-HHHHHHHHH---HHhcCCCC
Q psy12791 172 HPDILLVLDNTFLTAYYQKSLP-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-SLQARLKFL---QNSMGVVP 240 (393)
Q Consensus 172 ~~~~~livDea~~~~~~~~~~~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-~~~~~~~~~---~~~~~~~~ 240 (393)
+ ++++|.|++|....+..+.. ..+.++++||||.+ |+||+|+||+++.++ .....+... ........
T Consensus 198 ~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (395)
T d1xi9a_ 198 Y-EIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCP 275 (395)
T ss_dssp H-TCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCS
T ss_pred c-CeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhc-ccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCc
Confidence 9 99999999999866543211 24569999999999 699999999876432 222322221 12222233
Q ss_pred CHHHHHHH---Hhc-cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC--
Q psy12791 241 SPFDCWLV---TRG-LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG-- 314 (393)
Q Consensus 241 ~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (393)
+...+..+ +.. .+.+...++.+.++++.+.+.|++.+.+. +..|. .+.++|+.++..
T Consensus 276 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~----------------gg~~~~~~l~~~~~ 338 (395)
T d1xi9a_ 276 NTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIS-TTKPQ----------------GAFYIFPKIEVGPW 338 (395)
T ss_dssp CSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCC----------------BSSEECCEECSCSC
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecCCC----------------eeEEEeEECCCCCC
Confidence 32232222 222 22345556667788888999998776543 22232 245678887521
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
.+..+.+.+.++..++.+.+|..|... .++++|||++.
T Consensus 339 ~~~~~~~~~ll~~~gV~v~PG~~Fg~~---------------------~~~~~Ris~~~ 376 (395)
T d1xi9a_ 339 KNDKEFVLDVLHNAHVLFVHGSGFGEY---------------------GAGHFRAVFLP 376 (395)
T ss_dssp SSHHHHHHHHHHHHCEECEEGGGGCGG---------------------GTTBEEEECCS
T ss_pred CCHHHHHHHHHHhCCEEEEcChhhCCC---------------------CCCEEEEEecC
Confidence 122222233334445666666554211 15799999974
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=8.6e-31 Score=246.45 Aligned_cols=324 Identities=17% Similarity=0.208 Sum_probs=215.7
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHh----CC---CcEEEeccHHHH-H-HHHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLE----EA---KHGLCYSSGLGA-V-TAVTH 92 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~----~~---~~~i~~~~G~~a-l-~~~~~ 92 (393)
++++ +...|.+.+|..+.+++.+.....+.|+. ..+..+||+++|+++ |. +++|++|+|+++ + .++..
T Consensus 29 ~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~--~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~ 106 (389)
T d2gb3a1 29 RIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSH--SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAV 106 (389)
T ss_dssp EEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCC--TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCC--CcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccc
Confidence 4566 55666665565555555443233344542 356889999999876 33 278999999886 6 66778
Q ss_pred hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HH
Q psy12791 93 LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VK 163 (393)
Q Consensus 93 ~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~ 163 (393)
++++||.|+++.|+|.. +...++..|..++.++.+ +.+.+.....++++++++++||||||.+++ ++
T Consensus 107 l~~~gd~V~i~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~ 182 (389)
T d2gb3a1 107 IANPGDEILVLEPFYAN----YNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMR 182 (389)
T ss_dssp HCCTTCEEEEEESCCTH----HHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred cccCCCeEEEeCCCCcc----ccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHH
Confidence 89999999999999984 667778889888888764 345566667778999999999999999998 77
Q ss_pred HHHHHHHhCCCcEEEEeCccCcccccCCC------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcC
Q psy12791 164 AISAVVKQHPDILLVLDNTFLTAYYQKSL------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMG 237 (393)
Q Consensus 164 ~l~~l~~~~~~~~livDea~~~~~~~~~~------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 237 (393)
+|.++|+++ +++||+||+|....+.... .....+++.|+||.+ +.||+|+||++++++.+.+.........
T Consensus 183 ~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~-~~~GlRiG~~~~~~~~i~~~~~~~~~~~- 259 (389)
T d2gb3a1 183 YLVEIAERH-GLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAMKLAQGR- 259 (389)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHHHHHHHS-
T ss_pred HHHhhcccC-CEEEEEeccccccccccccccccccccccccccccccccc-cCcccceeeeeccchhHHHHHhhhhhcc-
Confidence 888999999 9999999999986654321 134668999999999 6999999999998666666555444433
Q ss_pred CCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC
Q psy12791 238 VVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG 313 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (393)
...+...+.++...+. .+...++...++++.+.+.|++++... +..|. .+.++|+.++.
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~----------------~g~~~~~~lp~ 322 (389)
T d2gb3a1 260 LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKPS----------------GAFYITAELPV 322 (389)
T ss_dssp CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCCS----------------BSSEEEEECSS
T ss_pred ccccccccccccccccccchhcccccccccccchhhhhhhhhhcccc-ccCCC----------------ceEEEEEeCCC
Confidence 3334444433333322 234455666777888899998875533 22222 24578998853
Q ss_pred -C-HHHHHHHHHhcC--ccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC--hHHHHHHHHHHH
Q psy12791 314 -G-AEETRIFLESLL--IFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG--YTDLIADLDQAL 387 (393)
Q Consensus 314 -~-~~~~~~~~~~l~--~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~--~~~~i~~l~~al 387 (393)
+ .+-.+.+++... ..++.+.+|..+... + |..++++|||++... .++-++++.++|
T Consensus 323 ~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~--~----------------~~~~~~iRis~~~~~~~l~~a~~~L~~~l 384 (389)
T d2gb3a1 323 EDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--P----------------GLGKKEIRIACVLEKDLLSRAIDVLMEGL 384 (389)
T ss_dssp SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--T----------------TTTSSEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhhhCCEEEEeCcccccC--C----------------CCCCCEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 2 233444444422 224445444333211 0 223689999997431 133345566666
Q ss_pred HHh
Q psy12791 388 RKA 390 (393)
Q Consensus 388 ~~~ 390 (393)
++.
T Consensus 385 k~f 387 (389)
T d2gb3a1 385 KMF 387 (389)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=4.9e-31 Score=246.94 Aligned_cols=298 Identities=16% Similarity=0.185 Sum_probs=207.5
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~ 91 (393)
++++ +...+.+.+|+...+++.+.+. ..+.|+ +..+..+||+++++++. . ++.+++++|+++ + .++.
T Consensus 29 ~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~--~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 106 (375)
T d1o4sa_ 29 DVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYT--DPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFM 106 (375)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCC--CTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCC--CCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHH
Confidence 4777 5556666555555555433221 223343 23578899999999753 2 267888888765 7 7778
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD--- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~--- 161 (393)
+++++||.|++++|+|+. +...+...|..+..++.+ +.+.++....++++++++++||||||.+++
T Consensus 107 ~l~~~gd~vlv~~P~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~ 182 (375)
T d1o4sa_ 107 ALLDPGDEVIVFSPVWVS----YIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREF 182 (375)
T ss_dssp HHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred HHhCCCCEEEEccCcccc----chhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHH
Confidence 899999999999999985 555566778777776654 678888888888999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEeCccCcccccCC--------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH
Q psy12791 162 VKAISAVVKQHPDILLVLDNTFLTAYYQKS--------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ 233 (393)
Q Consensus 162 ~~~l~~l~~~~~~~~livDea~~~~~~~~~--------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~ 233 (393)
+++|.++|+++ +++||+||+|........ ...++.++++|+||.+ |+||+|+||++++ +++++.+....
T Consensus 183 ~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~~~~~-~~~~~~~~~~~ 259 (375)
T d1o4sa_ 183 LEGLVRLAKKR-NFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISS-EKVATAVSKIQ 259 (375)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECC-HHHHHHHHHHH
T ss_pred HHHHHHhHHHc-CCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCcccccccccc-ccchhhhhhhh
Confidence 67788889999 999999999997654321 1235779999999999 6999999999998 78888777666
Q ss_pred HhcCCCCCHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 234 NSMGVVPSPFDCWLVTRGLK-TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
...........+.......+ ......+.+.++.+.+.+.|++. ++. +..|. .+.++|+.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~-g~~-~~~p~----------------gg~f~~~~~~ 321 (375)
T d1o4sa_ 260 SHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GVK-FVEPE----------------GAFYLFFKVR 321 (375)
T ss_dssp HHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCS----------------BSSEEEEECS
T ss_pred ccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc-Cce-EecCC----------------ccEEEEEECC
Confidence 66555555555544444443 33445555666777778888764 222 22222 2456899996
Q ss_pred CC-HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecC
Q psy12791 313 GG-AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGV 373 (393)
Q Consensus 313 ~~-~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~ 373 (393)
++ .+...++ ++..++.+.+|..|. .+++||||++.
T Consensus 322 ~~~~~~~~~l---l~~~gV~v~pG~~F~-----------------------~~g~iRis~~~ 357 (375)
T d1o4sa_ 322 GDDVKFCERL---LEEKKVALVPGSAFL-----------------------KPGFVRLSFAT 357 (375)
T ss_dssp SCHHHHHHHH---HHHHCEECEEGGGGT-----------------------CTTEEEEECCS
T ss_pred CCHHHHHHHH---HHhCCEEEEEccccC-----------------------CCCeEEEEEcC
Confidence 43 2223333 333456666654431 15799999974
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.97 E-value=6.6e-31 Score=247.56 Aligned_cols=317 Identities=15% Similarity=0.138 Sum_probs=204.9
Q ss_pred CCCC-CCCCCCCccCCeeeeCCCCCCCC-CccccCCCCchHHHHHHHHHHHh----CCC---cEEEeccHHHH-H-HHHH
Q psy12791 23 QWRS-QCVIPPIILSTTFKQNTPGQPPQ-GFEYSRSNNPTRRNLERCIASLE----EAK---HGLCYSSGLGA-V-TAVT 91 (393)
Q Consensus 23 ~~~~-~~~~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~lr~~la~~~----~~~---~~i~~~~G~~a-l-~~~~ 91 (393)
++++ +.-.+.|.+|+.+.+++.+.+.. .+.|+ + +..+||+++|+++ |.+ ++|++|+|+++ + .++.
T Consensus 32 ~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~---~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~ 107 (394)
T d1c7na_ 32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT---G-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVR 107 (394)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB---C-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC---C-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhc
Confidence 5666 44444555555555555433221 23343 3 3468999999986 432 78999899876 7 7788
Q ss_pred HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--------CHHHHHhhcC-CCCcEEEEecCCCCcccccC-
Q psy12791 92 HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--------KIENLIKYIK-PNTKMVWIENPTNPLMTVFD- 161 (393)
Q Consensus 92 ~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~- 161 (393)
+++++||.|+++.|.|.+ +....+..|...+.++.. |.+.++..+. ++++++++++||||||.+++
T Consensus 108 ~~~~pgd~vi~~~p~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~ 183 (394)
T d1c7na_ 108 EFTKPGDGVIIITPVYYP----FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKK 183 (394)
T ss_dssp HHCCTTCEEEECSSCCTH----HHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCH
T ss_pred cccccccccccccCcccc----hhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccH
Confidence 899999999999999985 566677888888887753 5666766654 46999999999999999998
Q ss_pred --HHHHHHHHHhCCCcEEEEeCccCcccccCCC----C------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 162 --VKAISAVVKQHPDILLVLDNTFLTAYYQKSL----P------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 162 --~~~l~~l~~~~~~~~livDea~~~~~~~~~~----~------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+++|+++|+++ +++||+||+|.++.+.... . ....+++.|+||.+ |++|+|+||++++++.+.+.+
T Consensus 184 ~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~~i~~~~ 261 (394)
T d1c7na_ 184 DELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNPDIRERF 261 (394)
T ss_dssp HHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCHHHHHHH
T ss_pred HHhhhhhcccccc-ceeEeccccccccccCCccccchhhhhcccccceeecccccccc-cccccccccccccChhhhhhh
Confidence 66688888999 9999999999987653211 1 13559999999999 699999999999878888888
Q ss_pred HHHHHhcCCCCCHHHH-HHHHhc---c-CCHHHHHHHHHHHHHHHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCC
Q psy12791 230 KFLQNSMGVVPSPFDC-WLVTRG---L-KTLPCRLKEHERGSIEVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGT 303 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 303 (393)
...............+ .++... . +......+...++.+.+.++++. .+++. +..|. .
T Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~----------------g 324 (394)
T d1c7na_ 262 TKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-APLIE----------------G 324 (394)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB-CCCCS----------------B
T ss_pred hhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccccee-ecCCC----------------c
Confidence 7776655544433322 222111 1 12233344444555566666653 23332 11222 1
Q ss_pred cceEEEEEcC---CHHH-HHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCC--hH
Q psy12791 304 SGMLSFYVNG---GAEE-TRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEG--YT 377 (393)
Q Consensus 304 ~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~--~~ 377 (393)
+.++|+.+++ +.++ .+.++++ .++.+.+|..|... .++++|||++... .+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Ll~~---~gV~v~pG~~Fg~~---------------------~~~~iRis~~~~~e~i~ 380 (394)
T d1c7na_ 325 TYLQWIDFRALKMDHKAMEEFMIHK---AQIFFDEGYIFGDG---------------------GIGFERINLAAPSSVIQ 380 (394)
T ss_dssp SSEEEEECGGGCCCHHHHHHHHHHT---TCCCCEEGGGGCGG---------------------GTTEEEEECCSCHHHHH
T ss_pred eeEEEEECCCCCCCHHHHHHHHHHh---CCEEEEcchhhCCC---------------------CCCEEEEEEeCCHHHHH
Confidence 3568888853 2222 3334443 35555555544210 1689999997432 23
Q ss_pred HHHHHHHHHHHHh
Q psy12791 378 DLIADLDQALRKA 390 (393)
Q Consensus 378 ~~i~~l~~al~~~ 390 (393)
+-++++.++|+++
T Consensus 381 eal~rl~~~l~~L 393 (394)
T d1c7na_ 381 ESLERLNKALKDL 393 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3345555555544
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=2.8e-30 Score=244.78 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=160.7
Q ss_pred CchHHHHHHHHHHHhC------------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 58 NPTRRNLERCIASLEE------------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~------------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
..+..+||+++|+++. . +++|++|+|+++ + .++.+++++||.|++++|+|+. |...++..|
T Consensus 71 ~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~----~~~~~~~~G 146 (412)
T d1bw0a_ 71 TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPH----YETVCKAYG 146 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTH----HHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchh----hhhhhhccC
Confidence 3568899999998762 2 268999999876 7 7778899999999999999984 777788999
Q ss_pred cEEEeeCCC-------CHHHHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCCC
Q psy12791 123 LEVDFVDLR-------KIENLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKSL 192 (393)
Q Consensus 123 ~~v~~~~~~-------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~~ 192 (393)
++++.++++ +++++++...++++++++++||||||.+++ +++|.++|+++ +++||+||+|..+.+....
T Consensus 147 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~-~~~vi~De~Y~~~~~~~~~ 225 (412)
T d1bw0a_ 147 IGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKD 225 (412)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSC
T ss_pred ccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccC-CeeeechhhHHHhccCCCC
Confidence 999998863 788899988889999999999999999998 66778888899 9999999999986553211
Q ss_pred --C----------CcCcEEEEcccccccCCCCceEEEEEecCh-----HHHHHHHHHHHhcCCCCCHHHHHHHHhccC--
Q psy12791 193 --P----------WGVDIVLYSLTKYMNGHSDVVMGATVTNDD-----SLQARLKFLQNSMGVVPSPFDCWLVTRGLK-- 253 (393)
Q Consensus 193 --~----------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 253 (393)
. ....++++|+||.+ |++|+|+||++++++ .++.................++.++.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (412)
T d1bw0a_ 226 PNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP 304 (412)
T ss_dssp TTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC
T ss_pred CccccccccccccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc
Confidence 0 12348889999999 699999999998642 333333333333333333333333322222
Q ss_pred --CHHHHHHHHHHHHHHHHHHHhhCCCcc
Q psy12791 254 --TLPCRLKEHERGSIEVAKFLESHPCVK 280 (393)
Q Consensus 254 --~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (393)
.+...++++.++++.+.+.|.+.+++.
T Consensus 305 ~~~~~~~~~~~~~~r~~~~~~l~~~~g~~ 333 (412)
T d1bw0a_ 305 QEHLDQIVAKIEESAMYLYNHIGECIGLA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCce
Confidence 234455566677778888887766654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.97 E-value=1.9e-30 Score=246.22 Aligned_cols=325 Identities=14% Similarity=0.098 Sum_probs=212.2
Q ss_pred CCCCCCCCCCCccCC-eeeeCCCCCCCC-CccccCCC-CchHHHHHHHHHHHh----CC----CcEEEeccHHHH-H-HH
Q psy12791 23 QWRSQCVIPPIILST-TFKQNTPGQPPQ-GFEYSRSN-NPTRRNLERCIASLE----EA----KHGLCYSSGLGA-V-TA 89 (393)
Q Consensus 23 ~~~~~~~~~p~~~~~-~~~~~~~~~~~~-~~~y~~~~-~~~~~~lr~~la~~~----~~----~~~i~~~~G~~a-l-~~ 89 (393)
+.|+-+..+|..+++ .+.+++.+.+.. ...+..|+ ..+..+||++||+++ |. .++|++|+|+++ + .+
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~ 106 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 106 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence 345523344554443 344333222111 12344454 357889999999875 32 267999999886 7 77
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---------------CHHHHHhhcCCCCcEEEEecCCC
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---------------KIENLIKYIKPNTKMVWIENPTN 154 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---------------d~~~l~~~l~~~~~~v~l~~p~n 154 (393)
+..++++||.|++++|+|+. +...+...|.+++.++.+ +.+++......+++++++++|||
T Consensus 107 ~~~l~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~N 182 (418)
T d2r5ea1 107 IQGHVDEGDEVIIIEPFFDC----YEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182 (418)
T ss_dssp HHHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCT
T ss_pred hhhccccccceeccccccch----hhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCc
Confidence 77899999999999999995 677778889998888762 56788888888899999999999
Q ss_pred CcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC---------CCCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 155 PLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 155 ptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
|||.+++ +++|.++|+++ ++++|.||+|..+.+... ......+++.|+||.+ |+||+|+||++++
T Consensus 183 PtG~~~s~e~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~- 259 (418)
T d2r5ea1 183 PLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWAYGP- 259 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEESC-
T ss_pred cccccccHHHHHHHhhhhhcC-CeeeecccchhhhccCCCccccccccccccceeeeeecCCccc-cCCCccccccccc-
Confidence 9999998 66788889999 999999999988654321 1124569999999999 6999999999997
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHh----------ccCC-HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCc
Q psy12791 223 DSLQARLKFLQNSMGVVPSPFDCWLVTR----------GLKT-LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHP 291 (393)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~ 291 (393)
+++++.+...........+...+..+.. ..+. +...++.+..+++.+.+.|++. ++. +..|.
T Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~----- 332 (418)
T d2r5ea1 260 EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMN-PTVPQ----- 332 (418)
T ss_dssp HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCE-EEECS-----
T ss_pred chhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCc-ccCCC-----
Confidence 8888888776655444444433322221 1122 3445566667778888888875 333 33343
Q ss_pred chHHHhhhcCCCcceEEEEEcC-----------CHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 292 NHELAKSQWSGTSGMLSFYVNG-----------GAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
.|.++|+.+.+ +......|.+.+ +..++.+.+|..|...... .
T Consensus 333 -----------gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~-----------~--- 387 (418)
T d2r5ea1 333 -----------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK-----------H--- 387 (418)
T ss_dssp -----------BSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGH-----------H---
T ss_pred -----------ceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCc-----------c---
Confidence 24567877631 111223333332 3345666666554321100 0
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..+++||||++. .++.++...+.|+++
T Consensus 388 --~g~~~iRis~~~--~~e~l~~a~~rl~~~ 414 (418)
T d2r5ea1 388 --LGEDFVRYCFFK--KDENLQKAAEILRKW 414 (418)
T ss_dssp --HHTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 015899999964 344444444554444
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3e-30 Score=244.80 Aligned_cols=326 Identities=17% Similarity=0.161 Sum_probs=214.9
Q ss_pred CCCCC-CCCCCCCccCCeeeeCCCCCCCCCccccCCC-CchHHHHHHHHHHHh----CCC----cEEEeccHHHH-H-HH
Q psy12791 22 DQWRS-QCVIPPIILSTTFKQNTPGQPPQGFEYSRSN-NPTRRNLERCIASLE----EAK----HGLCYSSGLGA-V-TA 89 (393)
Q Consensus 22 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~lr~~la~~~----~~~----~~i~~~~G~~a-l-~~ 89 (393)
.++|+ +...+.+.+|+.+.+++.+.+.......+|+ ..+..+||+++|+++ |.+ ++|++|+|+++ + .+
T Consensus 25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~ 104 (418)
T d1w7la_ 25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 104 (418)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHH
Confidence 45677 5544445555544444433333333344453 457889999999885 443 47999999876 7 77
Q ss_pred HHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----------------CHHHHHhhcCCCCcEEEEecC
Q psy12791 90 VTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----------------KIENLIKYIKPNTKMVWIENP 152 (393)
Q Consensus 90 ~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----------------d~~~l~~~l~~~~~~v~l~~p 152 (393)
+.+++.+||.|++++|+|+. |...+...|.+++.++.. |.+++.....++++++++++|
T Consensus 105 ~~~l~~~g~~vlv~~p~~~~----y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p 180 (418)
T d1w7la_ 105 FQALVDEGDEVIIIEPFFDC----YEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180 (418)
T ss_dssp HHHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESS
T ss_pred HHhhccCCceeeccccccch----hHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccccccceeccCc
Confidence 78899999999999999985 677788889888776542 466677777778999999999
Q ss_pred CCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC----C-C----CcCcEEEEcccccccCCCCceEEEEEe
Q psy12791 153 TNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS----L-P----WGVDIVLYSLTKYMNGHSDVVMGATVT 220 (393)
Q Consensus 153 ~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~----~-~----~~~di~~~S~sK~~~G~~G~r~G~~~~ 220 (393)
|||||.+++ +++|.++|+++ ++++|+||+|.++.++.. + . ..+.+++.|+||.+ +.||+|+||+++
T Consensus 181 ~NPtG~~~s~~~~~~i~~~a~~~-~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pG~RvG~~v~ 258 (418)
T d1w7la_ 181 NNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVGWVLG 258 (418)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEEEC
T ss_pred CCcccccccHHHHHHHHHHHHhc-CCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc-cCCCCccccccc
Confidence 999999998 67888889999 999999999998664321 1 1 13569999999999 699999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCC
Q psy12791 221 NDDSLQARLKFLQNSMGVVPSPFDCWLVTRGL-----------KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPS 289 (393)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~ 289 (393)
+ +++++.++..........+...+..+...+ +.+...++.+.++++.+.+.|+.. ++. +..|.
T Consensus 259 ~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~--- 332 (418)
T d1w7la_ 259 P-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PLIPQ--- 332 (418)
T ss_dssp C-HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEECS---
T ss_pred c-hhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCc-ccCCC---
Confidence 7 888888887776555555554433332221 123344555666777788888764 333 33343
Q ss_pred CcchHHHhhhcCCCcceEEEEEcC------------CHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhh
Q psy12791 290 HPNHELAKSQWSGTSGMLSFYVNG------------GAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
.|.++|+.++. +......+.+. ++..++.+.+|..|......
T Consensus 333 -------------gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~------------ 387 (418)
T d1w7la_ 333 -------------GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ------------ 387 (418)
T ss_dssp -------------BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH------------
T ss_pred -------------ceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCcc------------
Confidence 24567887631 00112223333 34445666666554321100
Q ss_pred HhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 357 ~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+..+++||||++. .++.++...+.|+++
T Consensus 388 ----~~~~~~iRis~~~--~~~~l~~a~~rl~~~ 415 (418)
T d1w7la_ 388 ----KHFDHYIRFCFVK--DEATLQAMDEKLRKW 415 (418)
T ss_dssp ----TTSCSEEEEECCC--CHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEEEcC--CHHHHHHHHHHHHHH
Confidence 1126899999863 344444444444443
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.97 E-value=1.5e-29 Score=240.75 Aligned_cols=275 Identities=16% Similarity=0.189 Sum_probs=183.7
Q ss_pred CCCC-chHHHHHHHHHHHhC--------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cC
Q psy12791 55 RSNN-PTRRNLERCIASLEE--------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KI 121 (393)
Q Consensus 55 ~~~~-~~~~~lr~~la~~~~--------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~ 121 (393)
+|++ .+..+||++||++++ . +++|++|+|+++ + .++.+++++||.|++++|+|+. +...+. ..
T Consensus 78 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~----~~~~~~~~~ 153 (428)
T d1iaya_ 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPA----FNRDLRWRT 153 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTT----HHHHTTTTT
T ss_pred cCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchH----HHHHHHHhc
Confidence 3444 467899999999853 2 368999999876 7 7778899999999999999985 444444 56
Q ss_pred CcEEEeeCCC-------CHHHHHhh------cCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCc
Q psy12791 122 GLEVDFVDLR-------KIENLIKY------IKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLT 185 (393)
Q Consensus 122 g~~v~~~~~~-------d~~~l~~~------l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~ 185 (393)
|++++.++.+ |++++... ...+++++++++||||||.+++ +++|.++|+++ +++||+||+|..
T Consensus 154 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~vI~De~Y~~ 232 (428)
T d1iaya_ 154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAA 232 (428)
T ss_dssp CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGG
T ss_pred CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccC-cEEEEecccccc
Confidence 8999998864 45555433 3456889999999999999998 67888999999 999999999998
Q ss_pred ccccCCC----------------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12791 186 AYYQKSL----------------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVT 249 (393)
Q Consensus 186 ~~~~~~~----------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
+.+..+. .....+++.|+||.+ |.+|+|+||+++.++.+.+.++..... .....+.+. .+.
T Consensus 233 ~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~ 309 (428)
T d1iaya_ 233 TVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFNDDVVNCARKMSSF-GLVSTQTQY-FLA 309 (428)
T ss_dssp GCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEESCHHHHHHHHHHHTT-SCCCHHHHH-HHH
T ss_pred cccCcccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccccccchhhhhhhhhcc-ccccccccc-chh
Confidence 6553210 123458999999999 699999999999767777776655443 222223222 222
Q ss_pred hccCC-------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-----CHHH
Q psy12791 250 RGLKT-------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-----GAEE 317 (393)
Q Consensus 250 ~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 317 (393)
..+.. +...++.+.++.+.+.+.|+.. ++. +..|. .|.++|+.++. ..+.
T Consensus 310 a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~-~~~p~----------------gg~f~w~~l~~~~~~~~~~~ 371 (428)
T d1iaya_ 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK-CLKNN----------------AGLFCWMDLRPLLRESTFDS 371 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCS----------------SSSEEEEECGGGCSSSSHHH
T ss_pred hhhhhhccccccccccccccchhHHHHHHHHHhC-CCE-EecCC----------------cceEEEEECccccccCCCCC
Confidence 22221 2223344455566677777642 332 22222 24568888752 2233
Q ss_pred HHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCCh
Q psy12791 318 TRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGY 376 (393)
Q Consensus 318 ~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~ 376 (393)
...+.+.| +..++.+.+|..|... .++++|+|++..+.
T Consensus 372 ~~~l~~~Ll~~~gV~v~PG~~F~~~---------------------~~g~~Ris~a~~~~ 410 (428)
T d1iaya_ 372 EMSLWRVIINDVKLNVSPGSSFECQ---------------------EPGWFRVCFANMDD 410 (428)
T ss_dssp HHHHHHHHHHTSCEECEEGGGGTCS---------------------SSSEEEEECSSSCH
T ss_pred HHHHHHHHHHhCCEEEEcchhcCCC---------------------CCCEEEEEeCCCCH
Confidence 33344333 3446666666554211 26899999976544
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.2e-30 Score=241.18 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=185.2
Q ss_pred HHHHHHHHHHh----CCC---cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 62 RNLERCIASLE----EAK---HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 62 ~~lr~~la~~~----~~~---~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
.++|+++|+++ |.+ ++|++|+|+++ + .++.+++++||+|++++|+|+. +..+++..|.+++.++.+
T Consensus 38 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~----~~~~~~~~g~~~~~v~~~~ 113 (361)
T d1d2fa_ 38 DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDA----FYKAIEGNQRTVMPVALEK 113 (361)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHH----HHHHHHHTTCEEEEEECEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccc----hhHHHHhhcceEEeecccc
Confidence 56888888865 543 68899999886 6 6777889999999999999984 666777889888877652
Q ss_pred -------CHHHHHhhcC-CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC-------CC
Q psy12791 132 -------KIENLIKYIK-PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS-------LP 193 (393)
Q Consensus 132 -------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~-------~~ 193 (393)
|++.+++.+. ++++++++++||||||.+++ +++|.++|+++ ++++|+||+|..+.+... ..
T Consensus 114 ~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~ 192 (361)
T d1d2fa_ 114 QADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVA 192 (361)
T ss_dssp CSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTC
T ss_pred cccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhh-heeeeeccccccccccccccccccccc
Confidence 7888888875 46899999999999999998 77899999999 999999999998654321 11
Q ss_pred CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHH-HHHHhcCC-CCCHHHHHHHHhcc---C-CHHHHHHHHHHHHH
Q psy12791 194 WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLK-FLQNSMGV-VPSPFDCWLVTRGL---K-TLPCRLKEHERGSI 267 (393)
Q Consensus 194 ~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~ 267 (393)
.+..+++.|+||.+ |.+|+|+||++..++...+... ......+. .++........... . .....+....++..
T Consensus 193 ~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~ 271 (361)
T d1d2fa_ 193 RGDWALLTSGSKSF-NIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLT 271 (361)
T ss_dssp CSSEEEEECSHHHH-TCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHH
Confidence 34569999999999 6999999999877555544433 33332222 23333322222111 1 12233344445555
Q ss_pred HHHHHHhh-CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhc-CccccccccCCccccccCcc
Q psy12791 268 EVAKFLES-HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESL-LIFRCAESLGGIESLADLPA 345 (393)
Q Consensus 268 ~l~~~l~~-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~ 345 (393)
.+.+.+.. .+.+. +..|. .+.++|+.+++.......|.++| +..++.+.+|..|...
T Consensus 272 ~~~~~~~~~~~~~~-~~~p~----------------gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~---- 330 (361)
T d1d2fa_ 272 YIADKMNAAFPELN-WQIPQ----------------STYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEE---- 330 (361)
T ss_dssp HHHHHHHHHCSSCC-CCCCS----------------BCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGG----
T ss_pred HHHHHhhhhccccc-ccccC----------------ceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCC----
Confidence 55555543 33322 22222 13467888742111223333332 4446666666544211
Q ss_pred cccCCCCChhhHhhcCCCCCeEEEEecCC--ChHHHHHHHHHHHHHh
Q psy12791 346 EMTHKSIPKETRDALGITDNLVRLSVGVE--GYTDLIADLDQALRKA 390 (393)
Q Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iRls~~~~--~~~~~i~~l~~al~~~ 390 (393)
.+++||+|++.. +.++-++++.++++++
T Consensus 331 -----------------~~~~vRis~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 331 -----------------GRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp -----------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 157999999742 2344466666666654
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.97 E-value=1e-28 Score=235.04 Aligned_cols=287 Identities=17% Similarity=0.183 Sum_probs=186.3
Q ss_pred CCCc-hHHHHHHHHHHHhC--------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc-cCC
Q psy12791 56 SNNP-TRRNLERCIASLEE--------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP-KIG 122 (393)
Q Consensus 56 ~~~~-~~~~lr~~la~~~~--------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~-~~g 122 (393)
|+++ +..+||+++|++++ . +++|++|+|+++ + .++.++++|||.|++++|+|+. +...++ ..|
T Consensus 80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~----~~~~~~~~~g 155 (431)
T d1m7ya_ 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPG----FDRDLKWRTG 155 (431)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTT----HHHHTTTTTC
T ss_pred CcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchh----HHHHHHHhcC
Confidence 4443 67899999999753 2 369999999876 7 7777889999999999999985 444454 468
Q ss_pred cEEEeeCCC-------CHHHHHhhcC------CCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcc
Q psy12791 123 LEVDFVDLR-------KIENLIKYIK------PNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTA 186 (393)
Q Consensus 123 ~~v~~~~~~-------d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~ 186 (393)
++++.++.+ |++.+++.+. .++++++++|||||||.+++ +++|.++|+++ +++||+||+|..+
T Consensus 156 ~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~-~~~vI~De~Y~~~ 234 (431)
T d1m7ya_ 156 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGT 234 (431)
T ss_dssp CEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGG
T ss_pred ceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc-Ccceeeccccccc
Confidence 899888764 5666665543 35789999999999999998 67788888999 9999999999976
Q ss_pred cccCCC------------------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12791 187 YYQKSL------------------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV 248 (393)
Q Consensus 187 ~~~~~~------------------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (393)
.+..+. ..++.+++.|+||.+ |++|+|+||++++++.+...+. .........++.++.++
T Consensus 235 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~ 312 (431)
T d1m7ya_ 235 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYSNDDMVVAAAT-KMSSFGLVSSQTQHLLS 312 (431)
T ss_dssp CCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEESCHHHHHHHH-HHGGGSCCCHHHHHHHH
T ss_pred ccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceeccchhhhHHHHH-HHhccccccccccchhh
Confidence 543210 013459999999999 6999999999998444444333 33333333334333322
Q ss_pred HhccC------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-----CHHH
Q psy12791 249 TRGLK------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-----GAEE 317 (393)
Q Consensus 249 ~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 317 (393)
..... .+...+..+.++.+.+.+.|++ +++. +..|. .|.++|+.++. +.+.
T Consensus 313 a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~-~~~p~----------------gg~f~w~~l~~~~~~~~~~~ 374 (431)
T d1m7ya_ 313 AMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGIS-CLNGN----------------AGLFCWVDMRHLLRSNTFEA 374 (431)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCE-ECCCC----------------SSSEEEEECGGGSSSSSHHH
T ss_pred hhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcE-EecCC----------------ceeEEEEECccccccCcccC
Confidence 21111 1233344455666677777765 3333 22222 24568888752 2333
Q ss_pred HHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChH---HHHHHHHHHHH
Q psy12791 318 TRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYT---DLIADLDQALR 388 (393)
Q Consensus 318 ~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~---~~i~~l~~al~ 388 (393)
...+.+.+ +..++.+.+|..|.. ..++++|+|++....+ +-++++.++|+
T Consensus 375 ~~~l~~~ll~~~gV~v~PG~~F~~---------------------~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 375 EMELWKKIVYEVHLNISPGSSCHC---------------------TEPGWFRVCFANLPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp HHHHHHHHHHTSCEECEEGGGGTC---------------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEeccccCC---------------------CCCCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence 33444433 344666666654421 1268999999754443 23344444444
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.1e-29 Score=236.19 Aligned_cols=320 Identities=14% Similarity=0.142 Sum_probs=208.0
Q ss_pred CCCCCCCCCCCccCCe-eeeCCCCCC-CCCccccCCCCchHHHHHHHHHHHh----CCC---c-EEEeccHHHH-H-HHH
Q psy12791 23 QWRSQCVIPPIILSTT-FKQNTPGQP-PQGFEYSRSNNPTRRNLERCIASLE----EAK---H-GLCYSSGLGA-V-TAV 90 (393)
Q Consensus 23 ~~~~~~~~~p~~~~~~-~~~~~~~~~-~~~~~y~~~~~~~~~~lr~~la~~~----~~~---~-~i~~~~G~~a-l-~~~ 90 (393)
+.++-+..+|..+++. +.+++.+.+ ...+.|+ +..+..+||+++|+++ |.+ + .|++|+|+++ + .++
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~--~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~ 104 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYA--PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 104 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCC--CTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC--CCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHH
Confidence 5566333445444443 333332221 1223454 3567889999999975 432 3 5889999876 7 778
Q ss_pred HHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCH--
Q psy12791 91 THLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDV-- 162 (393)
Q Consensus 91 ~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~-- 162 (393)
.+++++||.|++++|+|.. +...+...|..+..++.+ |++++++.+.++++++++++||||||.+++.
T Consensus 105 ~~l~~~gd~vl~~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~ 180 (382)
T d1u08a_ 105 TALVRNGDEVICFDPSYDS----YAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQAD 180 (382)
T ss_dssp HHHCCTTCEEEEEESCCTT----HHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred hhcccccceEEEecccccc----hhhhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCccccccccccc
Confidence 8899999999999999985 556667788777766554 7899999999999999999999999999984
Q ss_pred -HHHHHHHHhCCCcEEEEeCccCcccccCCC--C-------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH
Q psy12791 163 -KAISAVVKQHPDILLVLDNTFLTAYYQKSL--P-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL 232 (393)
Q Consensus 163 -~~l~~l~~~~~~~~livDea~~~~~~~~~~--~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~ 232 (393)
++|.++++++ +.+++.|+.|....+.... . ..+.+++.|+||.+ +.||+|+||++++ +++++.+...
T Consensus 181 ~~~l~~~~~~~-~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~pG~RiG~~v~~-~~~~~~~~~~ 257 (382)
T d1u08a_ 181 FAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAP-APISAEIRKV 257 (382)
T ss_dssp HHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECC-HHHHHHHHHH
T ss_pred chhhhhhhccc-cceeeeecchhhccccccccccccccccccCcEEEEeeccccc-cCCcccchhhhcc-chhHHHHHhh
Confidence 5666777778 9999999999875443211 1 13569999999999 6999999999997 8888888766
Q ss_pred HHhcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEE
Q psy12791 233 QNSMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLS 308 (393)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 308 (393)
........+...+..+...++ .+...++.+.+++..+.+.++. .++. +..|. .|.++|
T Consensus 258 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~-~~~p~----------------gg~~~~ 319 (382)
T d1u08a_ 258 HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-SRLE-ILPCE----------------GTYFLL 319 (382)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-SSCE-ECCCC----------------BSSEEE
T ss_pred hcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc-CCcE-EecCC----------------ceEEEE
Confidence 665555555544444333332 2333444455555555555542 2222 22222 245688
Q ss_pred EEEcC-CHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHH
Q psy12791 309 FYVNG-GAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQA 386 (393)
Q Consensus 309 ~~~~~-~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~a 386 (393)
+.++. .......|.+. ++..++.+.+|..|+.. +..++++|||++. ..| .+.++
T Consensus 320 ~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~-------------------~~~~~~~Ris~~~-~~e----~l~~a 375 (382)
T d1u08a_ 320 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD-------------------PFPHKLIRLCFAK-KES----TLLAA 375 (382)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS-------------------CCCSCEEEEECCS-CHH----HHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCC-------------------CCCCCEEEEEEeC-CHH----HHHHH
Confidence 88852 11112223332 23446666666554321 1125899999974 333 46667
Q ss_pred HHHhhcC
Q psy12791 387 LRKACKV 393 (393)
Q Consensus 387 l~~~~~~ 393 (393)
++++.++
T Consensus 376 l~RL~~l 382 (382)
T d1u08a_ 376 AERLRQL 382 (382)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 7777653
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=1.3e-28 Score=232.46 Aligned_cols=289 Identities=16% Similarity=0.147 Sum_probs=192.7
Q ss_pred CchHHHHHHHHHHHhC------C-CcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 58 NPTRRNLERCIASLEE------A-KHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~------~-~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
..+..+||+++|++++ . ++.|++|+|+++ + .++.+++++||.|++++|+|.. +...+...|++++.+
T Consensus 70 ~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~----~~~~~~~~g~~~~~v 145 (403)
T d1wsta1 70 TKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLA----AIQAFKYYDPEFISI 145 (403)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTCCEEEEE
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchh----hhHHHhhccccceeE
Confidence 4578899999999863 2 378999999876 6 6667789999999999999984 677788899999888
Q ss_pred CCC----CHH-------HHHhhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccC----
Q psy12791 129 DLR----KIE-------NLIKYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQK---- 190 (393)
Q Consensus 129 ~~~----d~~-------~l~~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~---- 190 (393)
+.+ +.. .........+.++++++||||||.+++ +++|.++|++| +++||+||+|.++.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~-~~~li~De~y~~l~~~~~~~~ 224 (403)
T d1wsta1 146 PLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY-DFLIVEDGPYSELRYSGEPTP 224 (403)
T ss_dssp EEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCC
T ss_pred eecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc-CceeccccchhheecCCCCCC
Confidence 775 111 222222334567777999999999998 66788889999 99999999999765431
Q ss_pred CC----CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc--cCC----HHHHHH
Q psy12791 191 SL----PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG--LKT----LPCRLK 260 (393)
Q Consensus 191 ~~----~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~ 260 (393)
++ ..++.++++|+||++ + +|+|+||++++ +++++.+...........+...+...... ... +...++
T Consensus 225 ~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (403)
T d1wsta1 225 PIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIE 301 (403)
T ss_dssp CGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cccccCCCCcEEEEcccccee-c-Ccccccccccc-hHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHH
Confidence 11 235679999999998 5 89999999997 88888776655544444444443322221 222 223344
Q ss_pred HHHHHHHHHHHHHhhC-CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccc
Q psy12791 261 EHERGSIEVAKFLESH-PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIES 339 (393)
Q Consensus 261 ~~~~~~~~l~~~l~~~-~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s 339 (393)
...++.+.+.+.|... +....+..|. .+.++|+.+++ ....+.+.+.+...++.+.+|+.|+
T Consensus 302 ~~~~~~~~~~~~L~~~~~~~~~~~~p~----------------gg~~~~~~~~~-~~~~~~~~~~l~~~gV~v~pg~~f~ 364 (403)
T d1wsta1 302 FYKPRRDAMLEALEEYMPEGVEWTKPE----------------GGMFVRVTLPE-GIDTKLMMERAVAKGVAYVPGEAFF 364 (403)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEECCCS----------------BSSEEEEECCT-TCCTTTTHHHHHHTTEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHhhccCCeEEeCCC----------------ceeEEEEECCC-CCCHHHHHHHHHHCCEEEEechhhc
Confidence 4455666666767543 2222233332 24578888863 2223334444444467766665543
Q ss_pred cccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChH---HHHHHHHHHHHHh
Q psy12791 340 LADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYT---DLIADLDQALRKA 390 (393)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~---~~i~~l~~al~~~ 390 (393)
... ..++++||+++..+.+ +.++++.++|++.
T Consensus 365 ~~~-------------------~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 365 VHR-------------------DKKNTMRLNFTYVPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp TTC-------------------CCCSEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-------------------CCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 221 1268999999865443 3345566666543
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.3e-28 Score=233.67 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=192.6
Q ss_pred CchHHHHHHHHHHHh----C---CC-cEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEe
Q psy12791 58 NPTRRNLERCIASLE----E---AK-HGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDF 127 (393)
Q Consensus 58 ~~~~~~lr~~la~~~----~---~~-~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~ 127 (393)
..+..+||++||+++ | .+ ++|++|+|+++ + .++..++.+||.|++++|+|.. +...++..|++++.
T Consensus 79 ~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~----~~~~~~~~g~~~~~ 154 (420)
T d1vp4a_ 79 TEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLG----AINAFRQYLANFVV 154 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHH----HHHHHHTTTCEEEE
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccc----hhHHHHHHhhhccc
Confidence 356889999999975 3 23 78999999886 6 6677889999999999999984 67778889999998
Q ss_pred eCCC----CHHHHHhhc---------CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCcccccCC
Q psy12791 128 VDLR----KIENLIKYI---------KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAYYQKS 191 (393)
Q Consensus 128 ~~~~----d~~~l~~~l---------~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~~~~~ 191 (393)
++.+ +++.+...+ ...+.++++++||||||.+++ +++|.++|+++ ++++|+||+|.++.+..+
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~ 233 (420)
T d1vp4a_ 155 VPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGE 233 (420)
T ss_dssp EEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSC
T ss_pred ccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcc-cccccccchhhhccccCc
Confidence 8875 444443322 122446667899999999998 67889999999 999999999998665322
Q ss_pred CC--------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC------CHHH
Q psy12791 192 LP--------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK------TLPC 257 (393)
Q Consensus 192 ~~--------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 257 (393)
.. .+..++++|++|++ .+|+|+||++++ +++++.+......+....+...+..+...++ .+..
T Consensus 234 ~~~~~~~~~~~~~~i~~~s~sk~~--~~G~RiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~ 310 (420)
T d1vp4a_ 234 TVDPIFKIGGPERVVLLNTFSKVL--APGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKP 310 (420)
T ss_dssp CCCCHHHHHCTTTEEEEEESTTTT--CGGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHH
T ss_pred ccccccccccccceeEEecccccc--cccccccccccc-chhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchh
Confidence 11 24558888899987 499999999997 8898888776666555555544443332221 1223
Q ss_pred HHHHHHHHHHHHHHHHhh----CCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccc
Q psy12791 258 RLKEHERGSIEVAKFLES----HPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAES 333 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~----~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 333 (393)
.++.+.++...+.+.|++ .+++. +..|. .+.++|+.+++ ......+.+.+...++.+.
T Consensus 311 ~~~~~~~~~~~~~~~L~~~~~~~~g~~-~~~p~----------------gg~f~~~~~~~-~~d~~~~~~~l~~~gV~v~ 372 (420)
T d1vp4a_ 311 TIELYRRKRTVMLNALEEYFSDIPGVK-WVKSE----------------GGLFIWLTLPE-GFDTWEMFEYAKRKKVFYV 372 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSTTCE-ECCCS----------------BSSEEEEECCT-TCCTTTTHHHHHHHTEECE
T ss_pred HHHHhhhhcccchhhhhhhhccCCCcE-EecCC----------------ceEEEEEECCC-CCCHHHHHHHHHHCCeEEE
Confidence 344445555555555543 34433 22222 24578998852 1122233344444566777
Q ss_pred cCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHH---HHHHHHHHHHhh
Q psy12791 334 LGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDL---IADLDQALRKAC 391 (393)
Q Consensus 334 ~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~---i~~l~~al~~~~ 391 (393)
+|..|+... ...+++|||++..+.+++ ++++.++|++..
T Consensus 373 PG~~F~~~~-------------------~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~ 414 (420)
T d1vp4a_ 373 PGRVFKVYD-------------------EPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG 414 (420)
T ss_dssp EGGGGCTTC-------------------CCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred echhhCCCC-------------------CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhh
Confidence 766553221 125899999987655544 455566665543
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.96 E-value=5.6e-28 Score=226.41 Aligned_cols=288 Identities=15% Similarity=0.134 Sum_probs=203.1
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccHHH-HH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSGLG-AV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G~~-al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
...+++|+.+|+++|++ +.|++++|++ ++ .++.++ .++||+|++++++|+++...+..+++..|++++.+|.+
T Consensus 50 ~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~ 129 (381)
T d1elua_ 50 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL 129 (381)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccccc
Confidence 34567899999999986 5677667755 57 666665 68999999999999988877888888899999999874
Q ss_pred ---C-HHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC---CCcEEEEeCccCcccccCCC-CCcCcEEEEcc
Q psy12791 132 ---K-IENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH---PDILLVLDNTFLTAYYQKSL-PWGVDIVLYSL 203 (393)
Q Consensus 132 ---d-~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~~~~livDea~~~~~~~~~~-~~~~di~~~S~ 203 (393)
+ .+.+++.++++|+++++++++|+||.++|+++|.++|+++ .++++++|++++.+.....+ ..++|+++.|+
T Consensus 130 ~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~ 209 (381)
T d1elua_ 130 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG 209 (381)
T ss_dssp SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred ccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 2 5667788888999999999999999999999999999985 26999999999976553333 25789999999
Q ss_pred cccccCCCCceEEEEEecChHHHHHHHHHHH----------------------hcCCCCCHHHHHHHHhcc------CCH
Q psy12791 204 TKYMNGHSDVVMGATVTNDDSLQARLKFLQN----------------------SMGVVPSPFDCWLVTRGL------KTL 255 (393)
Q Consensus 204 sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~------~~~ 255 (393)
+||++|++| +|+++.+ ++..+.+..... ...+.......+.+..++ ...
T Consensus 210 ~K~~~~p~G--~g~l~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~ 286 (381)
T d1elua_ 210 HKWFAGPAG--VGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA 286 (381)
T ss_dssp SSTTCCCTT--CEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred cccccccch--hhHHHhh-HHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccc
Confidence 999988888 7888887 555444321100 011222222222222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccC
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLG 335 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 335 (393)
..+.++..+..+.+.+.|++++++..+ .+. ...+++++|.+.+ ....+.+.+.|+..++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~--------------~~~~~~vsf~~~~-~~~~~~i~~~L~~~gi~v~~- 349 (381)
T d1elua_ 287 EERYQAICQRSEFLWRGLNQLPHVHCL-ATS--------------APQAGLVSFTVDS-PLGHRAIVQKLEEQRIYLRT- 349 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEES-CSS--------------CCSSSEEEEEECS-SSCHHHHHHHHHHTTEECEE-
T ss_pred ccchhhhhhHHHHHHHHHhcCCCeEec-CCC--------------CccccEEEEEcCC-CCCHHHHHHHHHhCCcEEEe-
Confidence 344566667778888999988876422 111 1135789999854 22223333444333433321
Q ss_pred CccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 336 GIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 336 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
. ..+++||+|++.++++++++++.++|+++.
T Consensus 350 -----~--------------------~~~~~lRis~~~~nt~edid~ll~~l~e~~ 380 (381)
T d1elua_ 350 -----I--------------------ADPDCIRACCHYITDEEEINHLLARLADFG 380 (381)
T ss_dssp -----E--------------------TTTTEEEEECCTTCCHHHHHHHHHHHTTCC
T ss_pred -----c--------------------CCCCEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 0 015899999999999999999999998764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.96 E-value=4e-28 Score=228.17 Aligned_cols=288 Identities=15% Similarity=0.131 Sum_probs=188.2
Q ss_pred chHHHHHHHHHHHh---C---CC-cEEEeccHHHH-H-HHHHHh--------cCCCCeEEEcCCCccchHHHHHHhcccC
Q psy12791 59 PTRRNLERCIASLE---E---AK-HGLCYSSGLGA-V-TAVTHL--------LSAGDHIISGDDVYGGTYRYFAQVAPKI 121 (393)
Q Consensus 59 ~~~~~lr~~la~~~---~---~~-~~i~~~~G~~a-l-~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~~ 121 (393)
....+|++.|++++ | .+ ..|++++|+++ | .++.++ +.|||+|+++.|+|+ .|...++..
T Consensus 100 ~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~----~Y~~~~~~~ 175 (425)
T d2hoxa1 100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP----VFREQTKYF 175 (425)
T ss_dssp TCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH----HHHHHHHHS
T ss_pred cCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccc----cHHHHHHHc
Confidence 44578999999875 3 12 47999999998 5 566666 578999999999998 466667777
Q ss_pred CcEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc-CCCCCcCcEEE
Q psy12791 122 GLEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-KSLPWGVDIVL 200 (393)
Q Consensus 122 g~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-~~~~~~~di~~ 200 (393)
+.+...++. |.+.+.+.++++++++++++||||||.+.. +-.+ ++.+|.||+|....+. .+.....+|++
T Consensus 176 ~~~~~~~~~-D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~-~~~~I~DEaY~~~~f~~~~~~~~~~Ivl 246 (425)
T d2hoxa1 176 DKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIK-GCKSIYDMVYYWPHYTPIKYKADEDILL 246 (425)
T ss_dssp CBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSST-TCEEEEECTTCSTTTSCCCSCBCCSEEE
T ss_pred CCCCCccCC-CHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhh-CCEEEEeccccCccccchhhhcCCeEEE
Confidence 766555554 677788888888999999999999998642 2235 8999999999765431 22234678999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---------------CHHHHHHHHHHH
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLK---------------TLPCRLKEHERG 265 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 265 (393)
+|+||.+ |++|+|+||++++++.+.+++.........+++...+..+...++ .....++...++
T Consensus 247 ~S~SK~f-glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r 325 (425)
T d2hoxa1 247 FTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325 (425)
T ss_dssp EEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred EeCHHhc-cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 799999999988878888888777665555555555443333221 133345555666
Q ss_pred HHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCc
Q psy12791 266 SIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLP 344 (393)
Q Consensus 266 ~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~ 344 (393)
...+.+.|...+. +..+.++...............+.+.|+.... +.+....++.+ .++.+.+|..|.
T Consensus 326 ~~~l~~~L~~~~~---~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e---~gI~v~pGs~FG----- 394 (425)
T d2hoxa1 326 WVNITALLDQSDR---FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQN---GRINTQNGVGFE----- 394 (425)
T ss_dssp HHHHHHHHTTSSS---EECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHH---TTEECEEGGGGT-----
T ss_pred HHHHHHHHHhcCC---ceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHh---CCEEEEechhcC-----
Confidence 7777777876544 23333322211111222223345678888742 12223344443 355555554431
Q ss_pred ccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 345 AEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 345 ~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++++|||+.. +++.++.+.+.|+++
T Consensus 395 -----------------~~~~yvRisl~~--~~e~ld~~l~rL~~~ 421 (425)
T d2hoxa1 395 -----------------ASSRYVRLSLIK--TQDDFDQLMYYLKDM 421 (425)
T ss_dssp -----------------SCTTEEEEECSS--CHHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 125899999964 344445555555544
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-27 Score=225.57 Aligned_cols=295 Identities=16% Similarity=0.192 Sum_probs=205.4
Q ss_pred chHHHHHHHHHHHhCCC--cEEEeccHHH-HH-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSSGLG-AV-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~G~~-al-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...++.|+.+|+++|+. +.+++++|++ ++ ..+.. ...+||+|++.+.+|+++...+...++..|++++.+|.
T Consensus 66 ~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~ 145 (405)
T d1jf9a_ 66 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 145 (405)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred HHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECC
Confidence 34677899999999953 5677766655 46 44433 36889999999999999988898888999999999987
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLT 204 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~s 204 (393)
+ |+++++..+.++|++|++++.+|.||.++|+++|.++|+++ |+++++|.+++.+.....+ ..++|+++.|++
T Consensus 146 ~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~-g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~h 224 (405)
T d1jf9a_ 146 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQH-GAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH 224 (405)
T ss_dssp CTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHT-TCEEEEECTTTTTTSCCCHHHHTCSEEEEEGG
T ss_pred CCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHc-CCeeecccceeccccccchhhcCCceeecccc
Confidence 5 78899999999999999999999999999999999999999 9999999999987653222 258999999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHH----------------------hcCCCCCHHHHHHHHhccCC-----HHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN----------------------SMGVVPSPFDCWLVTRGLKT-----LPC 257 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~-----~~~ 257 (393)
||+ |++| +|+++.+ +++.+.+..... ...++.+......+..+++. .+.
T Consensus 225 K~~-Gp~G--~g~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~ 300 (405)
T d1jf9a_ 225 KLY-GPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNN 300 (405)
T ss_dssp GTT-SCSS--CEEEEEC-HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccc-cCCC--ceeeeec-hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHH
Confidence 998 7999 8999987 666554321100 01122222222222222221 121
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCC
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGG 336 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~ 336 (393)
..+........+.+.++..+.+. ...|. ...+++.|.+++ +.+.....++ ..++.++.|+
T Consensus 301 i~~~~~~L~~~~~~~l~~~~~~~-~~~~~---------------~r~~ivsf~~~~~~~~~~~~~L~---~~gI~v~~G~ 361 (405)
T d1jf9a_ 301 IAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKHHAYDVGSFLD---NYGIAVRTGH 361 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTCCHHHHHHHHH---HTTEECEEEC
T ss_pred HHHHHHHHHHHHHhhhhcCCccc-ccCCc---------------CcCcEEEEEcCCCCHHHHHHHHH---HCCcEEEccc
Confidence 22222223334455555544432 22221 135789999964 4444444444 4466777776
Q ss_pred ccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 337 IESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 337 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.|+... ....+ .++.||+|++.++|+++|+++.++|+++.+
T Consensus 362 ~c~~~~--------------~~~~~-~~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 362 HCAMPL--------------MAYYN-VPAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp TTCHHH--------------HHHTT-CSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhH--------------HHhcC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 553221 11112 268999999999999999999999998875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.1e-27 Score=222.14 Aligned_cols=299 Identities=19% Similarity=0.194 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 61 RRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 61 ~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
.+++|+.+|+++|++ +.|++++|+++ + .++.+ .+++||+|+++++.|+++...+. .++..|++++.++.+
T Consensus 50 ~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~ 128 (391)
T d1p3wa_ 50 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQRN 128 (391)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCTT
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCCC
Confidence 457899999999998 67877777665 6 44443 35899999999999998765554 456779999999875
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccccc
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYM 207 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~ 207 (393)
|+++++++++++|++|++++++||||.++|+++|.++|+++ |+++++|++|+.+.....+ ..+.|+++.|++|++
T Consensus 129 ~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~-~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~ 207 (391)
T d1p3wa_ 129 GIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR-GIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY 207 (391)
T ss_dssp SCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHH-TCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT
T ss_pred CeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccC-CcEEEEeeccccCCccccchhcccccccccccccc
Confidence 68999999999999999999999999999999999999999 9999999999977653333 257899999999998
Q ss_pred cCCCCceEEEEEecChHHHHHHHHHHH--------hcCCCCCHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 208 NGHSDVVMGATVTNDDSLQARLKFLQN--------SMGVVPSPFDCWLVTR---GLKTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
|++| +|+++.+ ++.......... ..+....+....+... ..+......++..+....+.+.|..+
T Consensus 208 -g~~g--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 283 (391)
T d1p3wa_ 208 -GPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI 283 (391)
T ss_dssp -SCSS--CEEEEEC-BTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred -CCCc--eEEEEEe-cchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 7888 7888876 333222211000 0111111111111111 01111122233333333444444433
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
+... +.... ......++.|.+++ ...+.+...+. ++.++.|..|+..... +...
T Consensus 284 ~~~~-~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~v~~G~~c~~~~~~--------~~~~ 337 (391)
T d1p3wa_ 284 EEVY-LNGDL-------------EHGAPNILNVSFNY--VEGESLIMALK--DLAVSSGSACTSASLE--------PSYV 337 (391)
T ss_dssp TTEE-ECSCT-------------TTSCTTEEEEEETT--SCHHHHHHHTT--TEECBCCCC------C--------CCHH
T ss_pred cCee-ecccc-------------cccCceEEEEEeCC--CChHHHHHHhC--CCEEEccccccCCccc--------hhHH
Confidence 3321 11111 01124567777753 33444555554 3455555544322111 1122
Q ss_pred HhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 357 RDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 357 ~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
...+|.. .++||+|++.++|+++++.+.++|+++.
T Consensus 338 l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l 376 (391)
T d1p3wa_ 338 LRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 376 (391)
T ss_dssp HHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 2233433 4789999999999999999998887653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.94 E-value=1.6e-25 Score=211.24 Aligned_cols=299 Identities=16% Similarity=0.135 Sum_probs=207.5
Q ss_pred chHHHHHHHHHHHhCCC--cEEEeccHHHH-H-HHHHH----hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSSGLGA-V-TAVTH----LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~G~~a-l-~~~~~----~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
...++.|+.+|+++|++ +.+++++++++ + ..+.. .+++||+|++.+-+|++....+...++..|.++..++.
T Consensus 66 ~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~ 145 (408)
T d1t3ia_ 66 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 145 (408)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred HHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec
Confidence 45678899999999985 56777777664 5 33332 35789999999999999888888888889999999986
Q ss_pred C-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEccc
Q psy12791 131 R-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLT 204 (393)
Q Consensus 131 ~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~s 204 (393)
+ +.+.+++.++++|++|++++.+|.||.++|+++|.++|+++ |+++++|.+++.+.....+. .++|+++.|.+
T Consensus 146 ~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~-g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~h 224 (408)
T d1t3ia_ 146 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQA-GAKVLVDACQSAPHYPLDVQLIDCDWLVASGH 224 (408)
T ss_dssp CTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHT-TCEEEEECTTTTTTSCCCHHHHTCSEEEEEGG
T ss_pred cccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhcc-CceeeeccceecccccccccccCCceEEeccc
Confidence 4 78999999999999999999999999999999999999999 99999999999776533322 58999999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHH---------------------hcCCCCCHHHHHHHHhccCC-----HHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQN---------------------SMGVVPSPFDCWLVTRGLKT-----LPCR 258 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~-----~~~~ 258 (393)
||+ |++| +|+++.+ ++....+..... .-.++.+......+..+++. .+..
T Consensus 225 K~~-gp~G--~g~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i 300 (408)
T d1t3ia_ 225 KMC-APTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI 300 (408)
T ss_dssp GTT-SCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ccc-CCCC--ccccccc-hhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 997 7999 8999987 666544321100 01122222222222222222 2222
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGI 337 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~ 337 (393)
.+......+.+.+.+...+.+..+ .+.- ......+++.|.+++ +.++....+ ...++.++.|..
T Consensus 301 ~~~~~~l~~~l~~~~~~~~~~~~~-~~~~-----------~~~~~~~iv~f~~~~~~~~~v~~~L---~~~gI~v~~G~~ 365 (408)
T d1t3ia_ 301 HNYEVELTHYLWQGLGQIPQLRLY-GPNP-----------KHGDRAALASFNVAGLHASDVATMV---DQDGIAIRSGHH 365 (408)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEE-SCCG-----------GGSCBCSEEEEEETTBCHHHHHHHH---HTTTEECBCSCT
T ss_pred HHHHHHHHhHHhhhhccCcccccc-CCCc-----------cccCcceEEEEEeCCCCHHHHHHHH---hhCCcEEecCcc
Confidence 233334455556666666665422 2210 001235789999965 444444444 445677777765
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
|+-.. .. ..+ .++.||+|++.++|+++|+++.++|+++.+
T Consensus 366 c~~~~-------------~~-~~~-~~g~vRiS~~~ynt~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 366 CTQPL-------------HR-LFD-ASGSARASLYFYNTKEEIDLFLQSLQATIR 405 (408)
T ss_dssp TCHHH-------------HH-HTT-CCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccHH-------------HH-hhc-CCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 53110 00 011 257899999999999999999999998754
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.93 E-value=5.3e-25 Score=207.28 Aligned_cols=282 Identities=13% Similarity=0.061 Sum_probs=182.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC-------CcEEEeccHHH------HH-HHHHHhcCCCCeEEEcCCCccchHHHHHH
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEEA-------KHGLCYSSGLG------AV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQ 116 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~~-------~~~i~~~~G~~------al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~ 116 (393)
+.|. +..+..+||+++|+++.. ++.++++.|+. ++ .++..++++||.|++++|+|+. |..
T Consensus 65 ~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~----y~~ 138 (401)
T d7aata_ 65 KEYL--PIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGN----HTP 138 (401)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTT----HHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcc----hhh
Confidence 3454 456788999999997532 24454433322 23 4456678999999999999995 777
Q ss_pred hcccCCcEEEeeCCC-------CHHHHHhhc---CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCcc
Q psy12791 117 VAPKIGLEVDFVDLR-------KIENLIKYI---KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~-------d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~ 183 (393)
.++..|++++.++.. +.+.+.+.+ .++++++++++||||||.+++ +++|.++|+++ ++++|.||+|
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~-~~~ii~De~Y 217 (401)
T d7aata_ 139 IFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAY 217 (401)
T ss_dssp HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred HHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc-eEEEEEeccc
Confidence 788999999999873 566666555 356899999999999999998 77889999999 9999999999
Q ss_pred CcccccCC----C-------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH-------HHhcCCCCCHHHH
Q psy12791 184 LTAYYQKS----L-------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL-------QNSMGVVPSPFDC 245 (393)
Q Consensus 184 ~~~~~~~~----~-------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 245 (393)
..+.+... . .....+++.|+||.+ +++|+|+||++++ ..+.+..... ........+...+
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 295 (401)
T d7aata_ 218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVI-CRDAEEAKRVESQLKILIRPMYSNPPMNGA 295 (401)
T ss_dssp TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEE-CSSHHHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred hhhhcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccccceeecc-hHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence 98765321 0 113458889999999 6999999999997 4433333221 1122223333333
Q ss_pred HHHHhccC----------CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCH
Q psy12791 246 WLVTRGLK----------TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGA 315 (393)
Q Consensus 246 ~~~~~~~~----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
..+...+. .+...++++.++++.+.+.|+.+.....+. . ... ..|.++|+.+ +.
T Consensus 296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-----------~-~~~--~~G~F~~~~l--s~ 359 (401)
T d7aata_ 296 RIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQ-----------H-ITD--QIGMFCFTGL--KP 359 (401)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCH-----------H-HHH--CCSSEEECCC--CH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-----------e-ECC--CCeEEEecCC--CH
Confidence 33332221 122334445566677777777643211000 0 011 1134567655 56
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
+.+++++++.. +.+.. + +|||++..+.++ |+.+.++++++.|
T Consensus 360 e~~~~L~~e~g---V~~~p------------------------------g-~Ris~a~~~~~~-i~~la~ai~~v~k 401 (401)
T d7aata_ 360 EQVERLTKEFS---IYMTK------------------------------D-GRISVAGVASSN-VGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHC---EECCT------------------------------T-CEEEGGGCCTTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC---EEECC------------------------------C-cEEEeccCCHHH-HHHHHHHHHHHhC
Confidence 67777666533 22211 1 489987655544 5788888887654
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=8.4e-26 Score=209.97 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=133.7
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC------
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR------ 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~------ 131 (393)
+..+.+++.+|+++|.++.+++++|++++ .++.+++++||+|+++.++|.+++ ..++..|++++.+|.+
T Consensus 47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~----~~~~~~g~~v~~v~~~~~~~~~ 122 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSY----VAAERAGLNIALVPKTDYPDYA 122 (364)
T ss_dssp CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHH----HHHHHTTCEEEEECCCCTTTCC
T ss_pred HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccc----hHHHhccceEEEeeeccccccc
Confidence 45778999999999998888887778887 888889999999999999998643 3456789999999874
Q ss_pred -CHHHHHhhcCC-----CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEccc
Q psy12791 132 -KIENLIKYIKP-----NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLT 204 (393)
Q Consensus 132 -d~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~s 204 (393)
|++++++.+++ ++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+...... ..++|+++.|+|
T Consensus 123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~-~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~ 201 (364)
T d2e7ja1 123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEY-DVPLLVNGAYAIGRMPVSLKEIGADFIVGSGH 201 (364)
T ss_dssp CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTT-TCCEEEECTTTBTTBCCCHHHHTCSEEEEEHH
T ss_pred cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccc-cchhhccccchhhhhhhcccccccceeeeccc
Confidence 67888888753 246899999999999999999999999999 9999999999876543221 247899999999
Q ss_pred ccccCCCCceEEEEEecChHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQAR 228 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~ 228 (393)
|++ |++| ++||++++ +++.+.
T Consensus 202 K~~-~~~g-~~g~l~~~-~~~~~~ 222 (364)
T d2e7ja1 202 KSM-AASG-PIGVMGMK-EEWAEI 222 (364)
T ss_dssp HHS-SCCS-SCEEEEEC-TTTTTT
T ss_pred ccc-CCCC-CEEEEEEC-HHHHHH
Confidence 999 4665 58999998 555443
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=2.7e-24 Score=199.72 Aligned_cols=198 Identities=12% Similarity=0.106 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHhCCC--c-EEEeccHHHHH-HHHHHhcCCCCeEE-Ec-CCCccchHHHHHHhcccCCcEEEeeCCCCH
Q psy12791 60 TRRNLERCIASLEEAK--H-GLCYSSGLGAV-TAVTHLLSAGDHII-SG-DDVYGGTYRYFAQVAPKIGLEVDFVDLRKI 133 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~-~i~~~~G~~al-~~~~~~~~~gd~vl-~~-~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~ 133 (393)
...++++..++.++.. + .+++++|++++ .++.++. ++|.|+ ++ .|+|.+ +...++..|++++ +.+|+
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~----~~~~~~l~g~~~v--~~~d~ 123 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPS----IERSCKIVNAKYF--ESDKV 123 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTH----HHHHHHHTTCEEE--EESCH
T ss_pred hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchh----HHHHHHhcCCeEE--CCCCH
Confidence 4577888888877754 3 45555566677 6666654 565554 44 578885 5667788888765 45699
Q ss_pred HHHHhhcCCCCcEEEEecCCCCcc-cccCHHHHHHHHHhCCCcEEEEeCccCccccc-----CCCCCcCcEEEEcccccc
Q psy12791 134 ENLIKYIKPNTKMVWIENPTNPLM-TVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ-----KSLPWGVDIVLYSLTKYM 207 (393)
Q Consensus 134 ~~l~~~l~~~~~~v~l~~p~nptG-~~~~~~~l~~l~~~~~~~~livDea~~~~~~~-----~~~~~~~di~~~S~sK~~ 207 (393)
++++++++++|++|++++|+||++ ...++++|.++|+++ |+++++||+|+.+.+. .+...+.|+++.|+||++
T Consensus 124 e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~-~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~ 202 (366)
T d2aeua1 124 GEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM 202 (366)
T ss_dssp HHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS
T ss_pred HHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccC-cEEEEEecCccccccccccCCCHhhcCceEEEecccccc
Confidence 999999999999999999988754 566799999999999 9999999999875442 122357899999999988
Q ss_pred cCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCH-HHHHHHHHHHHHHH
Q psy12791 208 NGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTL-PCRLKEHERGSIEV 269 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 269 (393)
+ |.|+||++++ ++++++++.....++...++..++.+.++++.+ ..+++++.++++.+
T Consensus 203 ~---g~~~G~i~~~-~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i 261 (366)
T d2aeua1 203 E---GPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF 261 (366)
T ss_dssp S---SCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred c---ccceeEEEec-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4 4579999998 899999998888888888888887777666432 22555555555443
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.91 E-value=6e-23 Score=193.68 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=123.9
Q ss_pred CccccCCCCchHHHHHHHHHHHhCC-------CcE--EEeccHHHH-H-HH--HHHhcCCCCeEEEcCCCccchHHHHHH
Q psy12791 50 GFEYSRSNNPTRRNLERCIASLEEA-------KHG--LCYSSGLGA-V-TA--VTHLLSAGDHIISGDDVYGGTYRYFAQ 116 (393)
Q Consensus 50 ~~~y~~~~~~~~~~lr~~la~~~~~-------~~~--i~~~~G~~a-l-~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~ 116 (393)
.+.|. +..+..+||+++++++.. ++. ++.++|+.. + .+ +...+.+||.|++++|+|+. |..
T Consensus 66 ~~~Y~--p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~----y~~ 139 (412)
T d1yaaa_ 66 NHEYL--GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN----HMA 139 (412)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT----HHH
T ss_pred CCCCC--CCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCch----hHH
Confidence 34455 356888999999997531 122 223334333 3 22 34457899999999999985 777
Q ss_pred hcccCCcEEEeeCCC-------CHHHHHhhc---CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCcc
Q psy12791 117 VAPKIGLEVDFVDLR-------KIENLIKYI---KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~-------d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~ 183 (393)
.++..|++++.++.. +.+.+...+ .++++++++++||||||.+++ +++|.++|+++ ++++|+||+|
T Consensus 140 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y 218 (412)
T d1yaaa_ 140 IFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAY 218 (412)
T ss_dssp HHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred HHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC-CEEEeeccee
Confidence 788999999988863 455554444 345778999999999999998 77889999999 9999999999
Q ss_pred CcccccCC--------------CCCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 184 LTAYYQKS--------------LPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 184 ~~~~~~~~--------------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
..+.+... ......+++.|+||.+ |++|+|+||+++++
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~ 270 (412)
T d1yaaa_ 219 QGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLAL 270 (412)
T ss_dssp TTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEEC
T ss_pred eecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCcCceEEEEEch
Confidence 98765321 1123569999999999 69999999999874
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.5e-22 Score=186.93 Aligned_cols=283 Identities=16% Similarity=0.138 Sum_probs=209.0
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+.+.+|++.||+++|.+++++++||..+. .++.++..++|.|++....|.+ +...++..+.+++.++..|.+++
T Consensus 82 ~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~s----i~~g~~~~~~~~~~~~hnd~~~l 157 (383)
T d1bs0a_ 82 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHAS----LLEAASLSPSQLRRFAHNDVTHL 157 (383)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHH----HHHHHHTSSSEEEEECTTCHHHH
T ss_pred chHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHH----HhhccccCCCcceEecchHHHHH
Confidence 467899999999999999999999999996 8888899999999999988875 44456778889999999999888
Q ss_pred HhhcC---CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC-------CCCcCcEEEEccccc
Q psy12791 137 IKYIK---PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS-------LPWGVDIVLYSLTKY 206 (393)
Q Consensus 137 ~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~-------~~~~~di~~~S~sK~ 206 (393)
++.+. ++.++|+++.+++.+|.+.|+++|.++|++| ++++++||+++.++.... .....++++.|++|.
T Consensus 158 e~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~-~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka 236 (383)
T d1bs0a_ 158 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKG 236 (383)
T ss_dssp HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSST
T ss_pred HHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhc-CcEEEeecceeeeecCCcccchHHHcCCcccccccccccc
Confidence 88764 3467888899999999999999999999999 999999999998654321 123467889999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhccC---C--HHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGLK---T--LPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
+ |.+ +|+++++ .++.+.++.... .++...++..+..+...++ . ...++++..++...+.+.|...+..
T Consensus 237 ~-g~~---Gg~v~~~-~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~ 311 (383)
T d1bs0a_ 237 F-GVS---GAAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFT 311 (383)
T ss_dssp T-SSC---CEEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred c-ccc---ccccccc-hhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9 443 7888887 788887765433 3344555555444433332 2 2345566667777777777654421
Q ss_pred ceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 280 KGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 280 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
..++ .++++.+.+ ++++.+..+.+.|...++-++.. ..|..
T Consensus 312 ---~~~~----------------~s~Ii~v~~-g~~~~a~~~~~~L~~~Gi~v~~~------~~PtV------------- 352 (383)
T d1bs0a_ 312 ---LADS----------------CSAIQPLIV-GDNSRALQLAEKLRQQGCWVTAI------RPPTV------------- 352 (383)
T ss_dssp ---ECSC----------------CSSBCCEEE-ESHHHHHHHHHHHHHTTEECCEE------CTTSS-------------
T ss_pred ---cCCC----------------CCCEEEEEE-CCHHHHHHHHHHHHHCCceEEEE------cCCCC-------------
Confidence 1111 245667777 57777777777776655544321 12210
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......||++++..+|+++|+.+.++|+.+
T Consensus 353 -p~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 353 -PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp -CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 011457999999999999999999999865
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.3e-23 Score=194.64 Aligned_cols=217 Identities=14% Similarity=0.056 Sum_probs=145.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC-------C--cEEEeccHHH-HH---HHHHHhcCCCCeEEEcCCCccchHHHHHHh
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEEA-------K--HGLCYSSGLG-AV---TAVTHLLSAGDHIISGDDVYGGTYRYFAQV 117 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~~-------~--~~i~~~~G~~-al---~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~ 117 (393)
+.|. +..+..+||+++|+++.. + ..++++.|+. ++ ..++..+.+||.|++++|+|+. |...
T Consensus 63 ~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~----y~~~ 136 (396)
T d2q7wa1 63 KNYL--GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPN----HKSV 136 (396)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH----HHHH
T ss_pred CCCC--CCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCcc----chHH
Confidence 3454 456889999999997531 1 1333444433 33 3345567899999999999994 7788
Q ss_pred cccCCcEEEeeCCC-------CHHHHHh---hcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccC
Q psy12791 118 APKIGLEVDFVDLR-------KIENLIK---YIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFL 184 (393)
Q Consensus 118 ~~~~g~~v~~~~~~-------d~~~l~~---~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~ 184 (393)
++..|++++.++.. +...+.+ ...++++++++++||||||.+++ +++|.++|+++ ++++|+||+|.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~ 215 (396)
T d2q7wa1 137 FNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQ 215 (396)
T ss_dssp HHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCT
T ss_pred HHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC-CeEEEEecccc
Confidence 88999999998873 3333333 34456889999999999999998 77888999999 99999999999
Q ss_pred cccccCCC----------CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-------HhcCCCCCHHHHHH
Q psy12791 185 TAYYQKSL----------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-------NSMGVVPSPFDCWL 247 (393)
Q Consensus 185 ~~~~~~~~----------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 247 (393)
.+.+.... .....+++.|+||.+ +++|+|+||++++ ....+.+.... .....+.+...+.+
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 293 (396)
T d2q7wa1 216 GFARGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVGACTLV-AADSETVDRAFSQMKAAIRANYSNPPAHGASV 293 (396)
T ss_dssp TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEE-CSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred ccccCCccCchHhhhhhhhcccccccccccccc-cccCCCccccccc-hhHHHHHHHhhhhhhhhhhccccCCCHHHHHH
Confidence 86653110 123458889999999 6999999999998 44444333221 12223334444443
Q ss_pred HHhccCC----------HHHHHHHHHHHHHHHHHHHhhC
Q psy12791 248 VTRGLKT----------LPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 248 ~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
+...+.. +...++++.+++..+.+.|+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 332 (396)
T d2q7wa1 294 VATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK 332 (396)
T ss_dssp HHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333221 2223344455666777777654
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.5e-23 Score=194.12 Aligned_cols=299 Identities=16% Similarity=0.141 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHhCCC-cEEEeccHHHH-H-HHHH----HhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-
Q psy12791 60 TRRNLERCIASLEEAK-HGLCYSSGLGA-V-TAVT----HLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~-~~i~~~~G~~a-l-~~~~----~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~- 131 (393)
..++.|+++|+++|++ +.|++++|+++ + .++. ....+|+.|++....|+.... +...++..|++++.+|.+
T Consensus 45 ~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~~~~~~~~g~~v~~vp~~~ 123 (376)
T d1eg5a_ 45 HMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLE-TMKYLSMKGFKVKYVPVDS 123 (376)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHH-HHHHHHHTTCEEEECCBCT
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHH-HHHHHHhcCCEEEEEcCCC
Confidence 3556799999999997 66777777665 6 4332 245678888888777765544 445567789999999875
Q ss_pred ----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCC-CCcCcEEEEcccc
Q psy12791 132 ----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTK 205 (393)
Q Consensus 132 ----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK 205 (393)
|++++.++++++|++|++++++|+||..+|++++.++++.+ +++++++|.++..+.....+ ..++|+++.|++|
T Consensus 124 ~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K 203 (376)
T d1eg5a_ 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHK 203 (376)
T ss_dssp TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGG
T ss_pred CCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccce
Confidence 79999999999999999999999999999999999998664 48999999999987654333 3579999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHh
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQN-------SMGVVPSPFDCWLVTRGLK----TLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~ 274 (393)
|+ |++|. |+++.++... ++.... ................... ..............++.+.|.
T Consensus 204 ~~-gp~G~--~~l~~~~~~~---~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (376)
T d1eg5a_ 204 FH-GPKGV--GITYIRKGVP---IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM 277 (376)
T ss_dssp GT-SCTTC--EEEEECTTSC---CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ee-cCCCc--eeEEeccCcc---cCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccc
Confidence 98 79995 4444442211 111000 0111111222111111111 111122222233444555555
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCcccccCCCCC
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
..... ..... . ......+.+.+++ +.+..... |...++.++.|..|..... ..
T Consensus 278 ~~~~~--~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~---L~~~gI~vr~G~~c~~~~~--------~~ 331 (376)
T d1eg5a_ 278 NLGAH--IITPL-E------------ISLPNTLSVSFPNIRGSTLQNL---LSGYGIYVSTSSACTSKDE--------RL 331 (376)
T ss_dssp TTTCE--ECSCT-T------------SBCTTEEEEECTTCCHHHHHHH---HHHTTEECBC-------------------
T ss_pred ccccc--ccccc-c------------ccccceeeeccCCCCHHHHHHH---HhhCCeEEeCcchhcCCcc--------ch
Confidence 43321 11111 0 1123567777754 33333433 4445666666654321111 11
Q ss_pred hhhHhhcCCC----CCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 354 KETRDALGIT----DNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 354 ~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.....++|+. .+.||+|++.++|+++|+++.++|+++.
T Consensus 332 ~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv 373 (376)
T d1eg5a_ 332 RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (376)
T ss_dssp -CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 1222334443 3689999999999999999999999874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.90 E-value=1.6e-22 Score=190.89 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=119.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC--------C-cEEEeccHHH-HH-HHHH-------HhcCCCCeEEEcCCCccchHH
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEEA--------K-HGLCYSSGLG-AV-TAVT-------HLLSAGDHIISGDDVYGGTYR 112 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~~--------~-~~i~~~~G~~-al-~~~~-------~~~~~gd~vl~~~~~y~~~~~ 112 (393)
+.|. +..+..+||+++++++.. + ..++.+.|.. ++ .+.. .+++|||.|++++|+|+.
T Consensus 68 ~~Y~--p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~--- 142 (412)
T d1ajsa_ 68 HEYL--PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN--- 142 (412)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH---
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh---
Confidence 4455 456788999999998621 1 2344454443 33 2221 236899999999999984
Q ss_pred HHHHhcccCCcEEEeeC-CC-------CHHHHHhh---cCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEE
Q psy12791 113 YFAQVAPKIGLEVDFVD-LR-------KIENLIKY---IKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLV 178 (393)
Q Consensus 113 ~~~~~~~~~g~~v~~~~-~~-------d~~~l~~~---l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~li 178 (393)
|...++..|++.+.++ .. |.+.+++. ..++++++++++||||||.+++ +++|+++|++| ++++|
T Consensus 143 -y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~-~~~ii 220 (412)
T d1ajsa_ 143 -HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPF 220 (412)
T ss_dssp -HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEE
T ss_pred -hHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC-CEEEE
Confidence 7777888898755433 21 45554443 4567889999999999999998 78899999999 99999
Q ss_pred EeCccCcccccCC-----------CCCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 179 LDNTFLTAYYQKS-----------LPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 179 vDea~~~~~~~~~-----------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
.||+|..+.+... ......+++.|+||.+ +.+|+|+||++++.
T Consensus 221 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~ 274 (412)
T d1ajsa_ 221 FDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVA 274 (412)
T ss_dssp EEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEEC
T ss_pred ecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccc-cCCCCCccccccch
Confidence 9999998665321 0113468899999999 69999999999974
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.90 E-value=5.6e-22 Score=183.78 Aligned_cols=284 Identities=15% Similarity=0.106 Sum_probs=203.2
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIE 134 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~ 134 (393)
.+...+|++.||+++|.++++++++|..+. .++.++ ..++|.|+.....|.+ +...++..+++++.++.+|.+
T Consensus 89 ~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Has----i~~g~~ls~a~~~~f~Hnd~~ 164 (396)
T d2bwna1 89 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHAS----MIEGIKRNAGPKRIFRHNDVA 164 (396)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHH----HHHHHHHSCCCEEEECTTCHH
T ss_pred chHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhc----cchhhhccccCceEeecchHH
Confidence 357789999999999999999999999996 656555 4688888888877764 455667788999999999888
Q ss_pred HHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC---------CCCcCcEEEE
Q psy12791 135 NLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS---------LPWGVDIVLY 201 (393)
Q Consensus 135 ~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~---------~~~~~di~~~ 201 (393)
++++.+. .+.++|+++...+.+|.+.|+++|.+++++| ++++++||+++.++.... .....|++++
T Consensus 165 ~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y-~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~g 243 (396)
T d2bwna1 165 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG 243 (396)
T ss_dssp HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred HhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhh-cceeeeccceeeeeeccccccchhhcCCceeeeeeee
Confidence 7776653 2356888899999999999999999999999 999999999998765321 1234689999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhcc---CC--HHHHHHHHHHHHHHHHHHHh
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGL---KT--LPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~l~ 274 (393)
||+|.++ .. +||++++ +++++.++.... .+.+..+|.....+...+ .. ..++++++..+...+...+.
T Consensus 244 TlsKa~g-~~---Gg~v~~~-~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~ 318 (396)
T d2bwna1 244 TLAKAYG-VF---GGYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLK 318 (396)
T ss_dssp ESSSTTC-SC---CEEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-cc---ccccchh-HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999994 42 7888886 888888875433 345555565554443332 22 23345556667777777776
Q ss_pred hCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHh-cCccccccccCCccccccCcccccCCCCC
Q psy12791 275 SHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLES-LLIFRCAESLGGIESLADLPAEMTHKSIP 353 (393)
Q Consensus 275 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~s~~~~~~~~~~~~~~ 353 (393)
.... +-. ...++++.+.+ ++++.+..+.+. |+..++-+.. +.+|..
T Consensus 319 ~~g~------~~~-------------~~~spIvpv~i-g~~~~~~~~a~~lL~e~Gi~v~~------i~~PtV------- 365 (396)
T d2bwna1 319 ALGM------PII-------------DHGSHIVPVVI-GDPVHTKAVSDMLLSDYGVYVQP------INFPTV------- 365 (396)
T ss_dssp HHTC------CBC-------------CCSSSCEEEEC-CCHHHHHHHHHHHHHHHCEECCE------ECTTTS-------
T ss_pred hcCC------CcC-------------CCCCCEEEEEe-CCHHHHHHHHHHHHHhCCEEEEE------ECCCcC-------
Confidence 4321 100 01146788888 677777777665 3333333321 222210
Q ss_pred hhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 354 KETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 354 ~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
......+|++++..+|+++|+.+.++|++++
T Consensus 366 -------p~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 366 -------PRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp -------CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred -------CCCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 0124679999999999999999999999874
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.8e-24 Score=200.41 Aligned_cols=165 Identities=14% Similarity=0.098 Sum_probs=126.4
Q ss_pred CccccCCCCchHHHHHHHHHHHhCC-------CcEEEeccHHH---H--H-HHHHHhcCCCCeEEEcCCCccchHHHHHH
Q psy12791 50 GFEYSRSNNPTRRNLERCIASLEEA-------KHGLCYSSGLG---A--V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQ 116 (393)
Q Consensus 50 ~~~y~~~~~~~~~~lr~~la~~~~~-------~~~i~~~~G~~---a--l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~ 116 (393)
.+.|. +..+..+||+++|+++.. ++.++++.|.+ + + ..+..++.+||.|++++|+|+. |..
T Consensus 63 ~~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~----y~~ 136 (397)
T d3tata_ 63 ASLYL--PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWEN----HVA 136 (397)
T ss_dssp SBCCC--CTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTT----HHH
T ss_pred CCCCC--CcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccc----cHH
Confidence 34455 457888999999998653 24555544332 1 3 3344568999999999999995 777
Q ss_pred hcccCCcEEEeeCCC-------CHHHHHhhc---CCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCcc
Q psy12791 117 VAPKIGLEVDFVDLR-------KIENLIKYI---KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 117 ~~~~~g~~v~~~~~~-------d~~~l~~~l---~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~ 183 (393)
.++..|.+++.++.. +.+++.+.+ .++++++++++||||||.+++ +++|.++|+++ ++++|+||+|
T Consensus 137 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y 215 (397)
T d3tata_ 137 IFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAY 215 (397)
T ss_dssp HHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT-TCCCEECBSC
T ss_pred HHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc-CeeEEeehhh
Confidence 888999999999974 455555543 356789999999999999998 77889999999 9999999999
Q ss_pred CcccccCC----------CCCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 184 LTAYYQKS----------LPWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 184 ~~~~~~~~----------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
..+.+... ......+++.|+||.+ |++|+|+||++++.
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~ 263 (397)
T d3tata_ 216 QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMC 263 (397)
T ss_dssp TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCCBCCEEEC
T ss_pred hhhccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccccccccch
Confidence 98654310 1113459999999999 69999999999873
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-21 Score=182.55 Aligned_cols=286 Identities=14% Similarity=0.096 Sum_probs=210.0
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHH
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENL 136 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l 136 (393)
.+...+|++.+|+++|.+.+++++||..+. .++.++.+++|.|++....|.+. ...+...+.++..++..|.+++
T Consensus 89 ~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~----~~G~~~~~a~~~~~~~~d~~~l 164 (401)
T d1fc4a_ 89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASI----IDGVRLCKAKRYRYANNDMQEL 164 (401)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHH----HHHHHTSCSEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHH----HccccccCceEEEEcCCChHHH
Confidence 366789999999999999999999999996 77888999999999999999863 3445667788888888887777
Q ss_pred HhhcC------CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC---------CCCCcCcEEEE
Q psy12791 137 IKYIK------PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK---------SLPWGVDIVLY 201 (393)
Q Consensus 137 ~~~l~------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~---------~~~~~~di~~~ 201 (393)
++.+. ....+|++++..+..|.+.|+++|.++|++| |+++++||+++.+.... ......|+++.
T Consensus 165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~-~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~ 243 (401)
T d1fc4a_ 165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG 243 (401)
T ss_dssp HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEE
T ss_pred HHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhc-CcEEEehhhhccccccCCCCccchhccCCCCCeEEEe
Confidence 66552 2356888889988999999999999999999 99999999999865432 11224789999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHH--hcCCCCCHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--SMGVVPSPFDCWLVTRGL---KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
|++|.++|+ .+|++.++ .++++.++.... .++...++.....+...+ ...+.+++++.++...+.+.+...
T Consensus 244 tl~Ka~gg~---~Gg~v~g~-~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~ 319 (401)
T d1fc4a_ 244 TLGKALGGA---SGGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp ESSSTTCSS---SCEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccccccC---CcccccCC-HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhccc
Confidence 999999543 37888876 888887764422 345556665544443333 233456778888888888888754
Q ss_pred CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhh
Q psy12791 277 PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKET 356 (393)
Q Consensus 277 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~ 356 (393)
.... . ...++++.+.+ ++...+..+.+.|...++-+.. ...|..
T Consensus 320 g~~~----~---------------~~~~pIv~v~~-~~~~~a~~~~~~L~~~Gi~v~~------i~~PtV---------- 363 (401)
T d1fc4a_ 320 GFTL----A---------------GADHAIIPVML-GDAVVAQKFARELQKEGIYVTG------FFYPVV---------- 363 (401)
T ss_dssp TCCB----C---------------CSSSSEEEEEE-ECHHHHHHHHHHHHHTTEECCE------ECTTSS----------
T ss_pred CCcc----C---------------CCCCCEEEEEE-CCHHHHHHHHHHHHHCCceEEe------ECCCCC----------
Confidence 3210 0 01146777888 6778888888887665554432 112210
Q ss_pred HhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 357 RDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 357 ~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
......||++++..+|+++|+.+.++|+++.+
T Consensus 364 ----p~g~~~lRi~~~a~hT~edId~~v~al~ev~~ 395 (401)
T d1fc4a_ 364 ----PKGQARIRTQMSAAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp ----CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 01145699999999999999999999998763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.8e-22 Score=189.50 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=124.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----C---CcEEEeccHHHH--H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhccc
Q psy12791 51 FEYSRSNNPTRRNLERCIASLEE----A---KHGLCYSSGLGA--V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPK 120 (393)
Q Consensus 51 ~~y~~~~~~~~~~lr~~la~~~~----~---~~~i~~~~G~~a--l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~ 120 (393)
+.|. +..+..+||+++++++. . .+.+++++|+.+ + ..+..+..+||.|++++|+|+ .|...++.
T Consensus 63 ~~Y~--p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~----~y~~~~~~ 136 (394)
T d2ay1a_ 63 KTYA--GLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP----NHVSIMNF 136 (394)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCH----HHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEeccccc----chHHHHHH
Confidence 4455 35688899999999852 1 145556666554 4 445567899999999999998 47778888
Q ss_pred CCcEEEeeCCC-------CHHHHH---hhcCCCCcEEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEeCccCccc
Q psy12791 121 IGLEVDFVDLR-------KIENLI---KYIKPNTKMVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLDNTFLTAY 187 (393)
Q Consensus 121 ~g~~v~~~~~~-------d~~~l~---~~l~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livDea~~~~~ 187 (393)
.|.+++.++.. +.+++. ....++++++++++||||||.+++ +++|.++|+++ ++++|.||+|..+.
T Consensus 137 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~ 215 (394)
T d2ay1a_ 137 MGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFG 215 (394)
T ss_dssp HTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSS
T ss_pred cCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc-eEEEEEeccchhhc
Confidence 99999988763 233333 334556788888999999999998 77889999999 99999999999875
Q ss_pred ccCC----C------CCcCcEEEEcccccccCCCCceEEEEEecC
Q psy12791 188 YQKS----L------PWGVDIVLYSLTKYMNGHSDVVMGATVTND 222 (393)
Q Consensus 188 ~~~~----~------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~ 222 (393)
+... . .....+++.|+||.+ +.+|+|+||++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~ 259 (394)
T d2ay1a_ 216 DGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLALC 259 (394)
T ss_dssp SCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEEC
T ss_pred ccccccchhhhhhhhhcccccccccccccc-cCCcccccchhhch
Confidence 5311 0 112457888999999 59999999999874
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=1.3e-20 Score=175.33 Aligned_cols=304 Identities=15% Similarity=0.135 Sum_probs=206.6
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
-|..+++++.+|+++|.+.+++++||++|+ .++.++ +++||+|++++.+|.++ .......|.++++++.+
T Consensus 30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~----~~ai~~~g~~pv~~d~~~~~~ 105 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST----LNMIVLLGANPVMVDVDRDTL 105 (376)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH----HHHHHHTTCEEEEECBCTTTC
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccccc----ccchhccccceeeeccccccc
Confidence 377899999999999999999999999998 777777 89999999999999974 44456779999998775
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCC-cCcEEEEcc--ccc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPW-GVDIVLYSL--TKY 206 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~-~~di~~~S~--sK~ 206 (393)
|+++++++++++|++|+++| ..|...|+++|.++|+++ |++||+|++++.+........ ..+..+.|| +|.
T Consensus 106 ~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~~~~-~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~ 181 (376)
T d1mdoa_ 106 MVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERY-GIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKN 181 (376)
T ss_dssp CBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHH-TCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred CCCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHHHhc-CceEEeccchhccCeeCCeecccccCccccCCCcCC
Confidence 89999999999999999765 569999999999999999 999999999987643222111 123445555 688
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHHHHh------------------------cCCCCCHHHHHHHHhccCCHHHHHHHH
Q psy12791 207 MNGHSDVVMGATVTNDDSLQARLKFLQNS------------------------MGVVPSPFDCWLVTRGLKTLPCRLKEH 262 (393)
Q Consensus 207 ~~G~~G~r~G~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
++ ..+ +|.++++++++.++++..... ....++...+++....+..+....++.
T Consensus 182 l~-~g~--GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r 258 (376)
T d1mdoa_ 182 IT-CAE--GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARR 258 (376)
T ss_dssp SC-SSS--CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CC-CCC--CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHH
Confidence 84 433 899999988898888655421 122345677777777778888788888
Q ss_pred HHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHH----HHHHHHHhcCccccccccCCcc
Q psy12791 263 ERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAE----ETRIFLESLLIFRCAESLGGIE 338 (393)
Q Consensus 263 ~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~g~~~ 338 (393)
.+++..+.+.|+..+.+. .+....... ..+ ..+.+.+ +.. ..+.+++.|+..++.+.....
T Consensus 259 ~~~~~~~~~~L~~~~~~~---~~~~~~~~~--------~~~-~~~~~~~--~~~~~~~~Rd~l~~~L~~~gI~~~~~y~- 323 (376)
T d1mdoa_ 259 AAIAAQYHQAMADLPFQP---LSLPSWEHI--------HAW-HLFIIRV--DEARCGITRDALMASLKTKGIGTGLHFR- 323 (376)
T ss_dssp HHHHHHHHHHHHTSSCEE---CCCCSSCEE--------CCC-SCEEEEC--CHHHHSSCHHHHHHHHHHTTBCCBCCCC-
T ss_pred hhhhhhhhhhcccccccc---ccccccccc--------ccc-ccccccc--ccccchhhHHHHHHHHHHCCCCeeeECc-
Confidence 888889999998766532 222111000 001 1222222 111 123455555544444432211
Q ss_pred ccccCcccc---cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 339 SLADLPAEM---THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 339 s~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+...+... ....++..+.. ....|.|-++..-++++++.+.++|+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~p~a~~~----~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 324 AAHTQKYYRERFPTLTLPDTEWN----SERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp CGGGSHHHHHHSTTCCCHHHHHH----HTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred chhcCHHHHhhCCCCCCHHHHHH----HhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 111111100 01112222221 25778888888889999999999999874
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.85 E-value=8.2e-20 Score=170.19 Aligned_cols=308 Identities=16% Similarity=0.138 Sum_probs=212.9
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
.-+...++++.+|+++|.+.+++++||++|+ .++.++ +++||+|++|..+|.++ ...+...|.++++++.+
T Consensus 32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~----~~ai~~~g~~p~~~d~~~~~ 107 (384)
T d1b9ha_ 32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISS----SQAAQRLGAVTVPVDVDAAT 107 (384)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH----HHHHHHTTCEEEEECBCTTT
T ss_pred CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccc----cccccccccccccccccccc
Confidence 3578999999999999999999999999998 667665 78999999999999974 34456789999998864
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CCCcCcEEEEcc--c
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LPWGVDIVLYSL--T 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~~~~di~~~S~--s 204 (393)
|++++++.+.++|++|++ .+..|...+++++.++|+++ ++++|+|.+++.+..... .....|+.+.|| +
T Consensus 108 ~~~d~~~~~~~i~~~tk~i~~---~~~~g~~~d~~~i~~~~~~~-~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~ 183 (384)
T d1b9ha_ 108 YNLDPEAVAAAVTPRTKVIMP---VHMAGLMADMDALAKISADT-GVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNG 183 (384)
T ss_dssp CCBCHHHHHHHCCTTEEEECC---BCGGGCCCCHHHHHHHHHHH-TCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTT
T ss_pred cccchhhhccccccccccccc---ccccccccccccchhhhhhh-hhhhhhhhceecccccCCEecCcccccceeccccc
Confidence 799999999999999875 45558999999999999999 999999999987553221 212246666666 7
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHh-----------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNS-----------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSI 267 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
|.++ .. .+|+++++++++.+.++..... +...++.++++++...++.+....++..++..
T Consensus 184 K~i~-~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~ 260 (384)
T d1b9ha_ 184 KLMT-AG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWT 260 (384)
T ss_dssp SSSC-SS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccc-cc--ccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhh
Confidence 8874 32 3899999989999888766542 11225677888888889999988888899999
Q ss_pred HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCccc
Q psy12791 268 EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAE 346 (393)
Q Consensus 268 ~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~ 346 (393)
.+.+.|..++.+.....+.-.. .....+..|.++. ..+..+.|++.|...++...... ..+...+..
T Consensus 261 ~y~~~L~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y-~plh~~~~~ 328 (384)
T d1b9ha_ 261 LLSRLLGAIDGVVPQGGDVRAD-----------RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAF-RAIYRTDAF 328 (384)
T ss_dssp HHHHHHHTSTTCEECCCCTTCC-----------BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECC-CCGGGSHHH
T ss_pred hhhhhhhccccccccccccccc-----------ccccccccceecccccccHHHHHHHHHHCCCCeeeeC-cchhcCHHH
Confidence 9999999877753222111000 0111234555532 45556677777766555433221 111111110
Q ss_pred cc--C---------CCCChhhHhhcCCCCCeEEEEecCCCh-HHHHHHHHHHHHHhh
Q psy12791 347 MT--H---------KSIPKETRDALGITDNLVRLSVGVEGY-TDLIADLDQALRKAC 391 (393)
Q Consensus 347 ~~--~---------~~~~~~~~~~~g~~~~~iRls~~~~~~-~~~i~~l~~al~~~~ 391 (393)
.. . ..+|.... .....|.|-++..-+ +++++.+.++++++.
T Consensus 329 ~~~~~~~~~~~~~~~~~Pna~~----l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l 381 (384)
T d1b9ha_ 329 WELGAPDESVDAIARRCPNTDA----ISSDCVWLHHRVLLAGEPELHATAEIIADAV 381 (384)
T ss_dssp HHSSCCSSCHHHHHHTCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccccccccCCHHHHH----HHhCEEEccCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 0 00111111 124567777776655 568888888887653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.6e-21 Score=177.41 Aligned_cols=165 Identities=14% Similarity=0.216 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHHhCCC--cEEEecc-HHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAK--HGLCYSS-GLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~--~~i~~~~-G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
....++|+.|++++|.+ ..|++++ |+.++ .++..++.+|+++++....+.+.. +...+...+..+..+..+
T Consensus 52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1h0ca_ 52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQR--AVDIGERIGARVHPMTKDPGG 129 (388)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHH--HHHHHHHHC--CBCCBCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeee--eccccccccccccccccCCcc
Confidence 45788999999999997 2566665 45567 778888999999999988876543 333345556665555443
Q ss_pred --CHHHHHhhc-CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCC-CCcCcEEEEcccccc
Q psy12791 132 --KIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSL-PWGVDIVLYSLTKYM 207 (393)
Q Consensus 132 --d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~-~~~~di~~~S~sK~~ 207 (393)
|.+++++.+ ..++++|++++.+|.||.+.|+++|.++|+++ |+++++|.+++.+.....+ ..++|+++.|.+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~-g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~ 208 (388)
T d1h0ca_ 130 HYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRY-KCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKAL 208 (388)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTT-TCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTT
T ss_pred ccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcc-cccceeccccccccccccccccccceecccccccc
Confidence 566665554 34789999999999999999999999999999 9999999999977654333 358999999999999
Q ss_pred cCCCCceEEEEEecChHHHHHH
Q psy12791 208 NGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+|++| +|+++.+ +...+.+
T Consensus 209 ~gp~g--~~~~~~~-~~~~~~~ 227 (388)
T d1h0ca_ 209 NAPPG--TSLISFS-DKAKKKM 227 (388)
T ss_dssp CCCTT--CEEEEEC-HHHHHHH
T ss_pred cCCCc--eEEEeec-HHHHHhh
Confidence 88888 7888887 6666554
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=8.8e-20 Score=168.71 Aligned_cols=312 Identities=14% Similarity=0.096 Sum_probs=186.2
Q ss_pred CCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC-c--EEEec-cHHHHH-HHHHHhcCCCCeEEEcCCC
Q psy12791 32 PIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK-H--GLCYS-SGLGAV-TAVTHLLSAGDHIISGDDV 106 (393)
Q Consensus 32 p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~-~--~i~~~-~G~~al-~~~~~~~~~gd~vl~~~~~ 106 (393)
|...++.+.+++.... .+.++.+.....++.|+.+++++|++ + .++++ ||+.++ .++..+..+++.+++....
T Consensus 8 P~~~~~~V~~A~~~~~--~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~ 85 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFDS--CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNG 85 (361)
T ss_dssp SCCCCHHHHHTTCCCC--CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESS
T ss_pred CCCCCHHHHHHhhhhc--cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeeh
Confidence 4444445666654331 22233233456789999999999996 2 35554 555668 6677888887777766655
Q ss_pred ccchHHHHHHhcccCCcEE--EeeCCC-----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEE
Q psy12791 107 YGGTYRYFAQVAPKIGLEV--DFVDLR-----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVL 179 (393)
Q Consensus 107 y~~~~~~~~~~~~~~g~~v--~~~~~~-----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~liv 179 (393)
+..... ...++..+... ...+.. +.+.......+++++|.+++.+|.||..+|+++|.++|+++ |+++++
T Consensus 86 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~-g~~~~v 162 (361)
T d1m32a_ 86 AYGARM--VEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRY-GKTYIV 162 (361)
T ss_dssp HHHHHH--HHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHH-TCEEEE
T ss_pred hhhhhH--HHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhccc-ceeeEe
Confidence 443322 22223333333 332222 23444455667899999999999999999999999999999 999999
Q ss_pred eCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH---------------HH---hcCCCC
Q psy12791 180 DNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL---------------QN---SMGVVP 240 (393)
Q Consensus 180 Dea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~---------------~~---~~~~~~ 240 (393)
|.+++.+.....+ ..++|+++.|.+|+++|++| +|+++.+ ++..++++.. .. ......
T Consensus 163 Da~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 239 (361)
T d1m32a_ 163 DAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTS 239 (361)
T ss_dssp ECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCC
T ss_pred ecccccCcccccccccccceEEeeecccccCCCC--ceEEEec-hhhhhhhccccccccccchhhhccccccccccCCCC
Confidence 9999987654333 35899999999999988999 8999987 5555433210 00 011222
Q ss_pred CHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 241 SPFDCWLVTRGLKT------LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 241 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
...........+.. .....++.......+.++++...... ..+ +. .....++.|.++.+
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~-----~~--------~rs~~v~~~~~p~~ 304 (361)
T d1m32a_ 240 PTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNT--LLD-----DE--------LHSPIITAFYSPED 304 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCB--SSC-----GG--------GBCSSEEEEECCCC
T ss_pred CchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcc--cCC-----hh--------hcCCcEEEEECCCC
Confidence 22222221111111 11222333444556666666543211 000 00 01135667776421
Q ss_pred -HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 315 -AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 315 -~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
......+.+.|...++.+..|+. ..++.+|+|...++++++|+++.++|+++
T Consensus 305 ~~~~~~~~~~~l~~~gi~i~~G~~------------------------~~~~~~Ris~~g~~~~~di~~lv~al~~~ 357 (361)
T d1m32a_ 305 PQYRFSEFYRRLKEQGFVIYPGKV------------------------SQSDCFRIGNIGEVYAADITALLTAIRTA 357 (361)
T ss_dssp TTCCHHHHHHHHHHTTEECEECCC------------------------SSSCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcEEECCCc------------------------CCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22344556666555555544422 12578999964456778899999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.83 E-value=3.1e-20 Score=174.55 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHhCCC-cEEEecc-HHHHH-HHHHH------hcCCCCeEEEcCCCccchHHHHHHh-cccCCcEEEee
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSS-GLGAV-TAVTH------LLSAGDHIISGDDVYGGTYRYFAQV-APKIGLEVDFV 128 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~-G~~al-~~~~~------~~~~gd~vl~~~~~y~~~~~~~~~~-~~~~g~~v~~~ 128 (393)
...+++|+++|+++|++ +.+++++ +++++ .++.. ...+++.|++.+..|.+....+... .+.....+..-
T Consensus 70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (404)
T d1qz9a_ 70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR 149 (404)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc
Confidence 34568999999999987 4455555 45556 43322 2367888998888877654333322 22222222222
Q ss_pred CCCCHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEcccccc
Q psy12791 129 DLRKIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYM 207 (393)
Q Consensus 129 ~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK~~ 207 (393)
...++++++++++++|++|.+++.+|.||.++|+++|.++|+++ ++++++|.+++.+.....+. .++|+++.|.+||+
T Consensus 150 ~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~-~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~ 228 (404)
T d1qz9a_ 150 LVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHEC-GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYL 228 (404)
T ss_dssp EESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH-TCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTT
T ss_pred ccccchhHHHhcCCCceEEEEecccccccceecHHHHhcccccc-ccceeEEeeccccccccccccccceEEEEechhhc
Confidence 22378889999999999999999999999999999999999999 99999999999776533322 47899999999998
Q ss_pred cCCCCceEEEEEecChHHHHH
Q psy12791 208 NGHSDVVMGATVTNDDSLQAR 228 (393)
Q Consensus 208 ~G~~G~r~G~~~~~~~~~~~~ 228 (393)
.|++| -+|+++.+ +.+.+.
T Consensus 229 ~~~~g-~~g~~~~~-~~~~~~ 247 (404)
T d1qz9a_ 229 NGGPG-SQAFVWVS-PQLCDL 247 (404)
T ss_dssp CCCTT-CCCEEEEC-TTTTTT
T ss_pred ccCCc-eEEEEEec-hhhhhh
Confidence 65565 26777776 554443
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.7e-20 Score=170.04 Aligned_cols=305 Identities=18% Similarity=0.127 Sum_probs=185.8
Q ss_pred CCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHH
Q psy12791 36 STTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYF 114 (393)
Q Consensus 36 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~ 114 (393)
+|..++++.+...+...|+ ++|...+|++.||+++|.+++++++||++|+ .++.++.++||.+++..+.|.+... .
T Consensus 13 ~p~v~~A~~~a~~g~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~-~ 89 (343)
T d1m6sa_ 13 TEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYE-V 89 (343)
T ss_dssp CHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSS-T
T ss_pred CHHHHHHHHhhhcCCcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeee-c
Confidence 4566666655433334454 4689999999999999999999999999997 8888899999999999988753211 1
Q ss_pred HHhcccCCcEEEeeCCC----CHHHHHhhcCCC------Cc-EEEEecCCCCcccccC---HHHHHHHHHhCCCcEEEEe
Q psy12791 115 AQVAPKIGLEVDFVDLR----KIENLIKYIKPN------TK-MVWIENPTNPLMTVFD---VKAISAVVKQHPDILLVLD 180 (393)
Q Consensus 115 ~~~~~~~g~~v~~~~~~----d~~~l~~~l~~~------~~-~v~l~~p~nptG~~~~---~~~l~~l~~~~~~~~livD 180 (393)
.......+..+..++.+ |++.++..+... ++ .++.+.++|+.|.+.| +++|.++|+++ ++++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-g~~~~~D 168 (343)
T d1m6sa_ 90 GAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH-GINVHID 168 (343)
T ss_dssp THHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCEEEEE
T ss_pred ccccccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhc-CeEEEec
Confidence 12233445555555443 788888887643 33 3444677888888887 55677777899 9999999
Q ss_pred CccCcccccCCCC------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH--Hhcc
Q psy12791 181 NTFLTAYYQKSLP------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV--TRGL 252 (393)
Q Consensus 181 ea~~~~~~~~~~~------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 252 (393)
+++..+....... ...+..+.+.+|.. .|.+.|+++.. .+++..........+..........+ ....
T Consensus 169 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 244 (343)
T d1m6sa_ 169 GARIFNASIASGVPVKEYAGYADSVMFCLSKGL---CAPVGSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIAL 244 (343)
T ss_dssp ETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTT---CCSSCEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH
T ss_pred cccccccccccccchhhhccccccccccccccc---ccccccccccc-HHHHhhhHhhCcccccccchhHHHHHhhhhhh
Confidence 9998643221111 12334444444443 34457777776 77766666555544433322221111 1111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCcccccc
Q psy12791 253 KTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAE 332 (393)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (393)
.....+.+...++...+.+.+..+..... ..| ....++++.+.+.......|.+.|...++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v 307 (343)
T d1m6sa_ 245 TKMVDRLKEDHENARFLALKLKEIGYSVN-PED----------------VKTNMVILRTDNLKVNAHGFIEALRNSGVLA 307 (343)
T ss_dssp HHSSTTHHHHHHHHHHHHHHHHHHTCBCC-GGG----------------CCSSEEEEECTTSSSCHHHHHHHHHHHTEEC
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHhccCcc-CCC----------------CCceEEEEEeCCCcccHHHHHHHHHHCCCEE
Confidence 00011223333444444554544332210 111 1136788887533334455666665544433
Q ss_pred ccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 333 SLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 333 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
+.. .+..+|++++..+++++++.+.++|+++.+
T Consensus 308 ~~~---------------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 308 NAV---------------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp EEE---------------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 210 156899999999999999999999998753
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.81 E-value=4.5e-18 Score=157.90 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC-----
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR----- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~----- 131 (393)
|..+++++.+|+++|.+.+++++||++|+ .++.++ +++||+|++|+.+|.++. ..+...|+++++++.+
T Consensus 21 ~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~~~~~~g~~pv~~Di~~~~~~ 96 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV----APICYLKAKPVFIDCDETYNI 96 (374)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT----HHHHHTTCEEEEECBCTTSSB
T ss_pred HHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhH----HHHhhccceeEeccccccccc
Confidence 67899999999999999999999999998 777776 889999999999999753 3455679999999875
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccC--CCCCcCcEEEEccc--
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQK--SLPWGVDIVLYSLT-- 204 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~--~~~~~~di~~~S~s-- 204 (393)
+.++......+++++|++.+.. |...++++|.++|+++ +++||+|.|++.+.... ....-.|+.+.||+
T Consensus 97 ~~~~~~~~~~~~~~~~~aii~~~~~---G~~~d~~~i~~~~~~~-~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~ 172 (374)
T d1o69a_ 97 DVDLLKLAIKECEKKPKALILTHLY---GNAAKMDEIVEICKEN-DIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN 172 (374)
T ss_dssp CHHHHHHHHHHCSSCCCEEEEECGG---GCCCCHHHHHHHHHHT-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred ccccccccchhcccccccccccccc---cchhhhHHHHHHhhcc-CcchhhhhhhhhcceECCeecCCCCceEEEeccCc
Confidence 1234445667789999977765 9999999999999999 99999999999765322 22223589999994
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHHHHh--------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q psy12791 205 KYMNGHSDVVMGATVTNDDSLQARLKFLQNS--------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEVA 270 (393)
Q Consensus 205 K~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (393)
|.++ ..| +|.++++++++.++++..+.. +...++.+++++....++.+....++..+++..+.
T Consensus 173 K~l~-tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~ 249 (374)
T d1o69a_ 173 KIIT-TSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK 249 (374)
T ss_dssp SSSC-CSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cccc-ccc--ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHH
Confidence 8884 445 899999999999988766531 12336788888888899998888888888888888
Q ss_pred HHHhhC
Q psy12791 271 KFLESH 276 (393)
Q Consensus 271 ~~l~~~ 276 (393)
+.|...
T Consensus 250 ~~L~~~ 255 (374)
T d1o69a_ 250 EFLGEY 255 (374)
T ss_dssp HHHTTT
T ss_pred hhcccc
Confidence 888754
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.81 E-value=3.1e-19 Score=169.25 Aligned_cols=289 Identities=13% Similarity=0.085 Sum_probs=178.5
Q ss_pred HHHHHHhCCCc-EEEeccHHHH-H-HHHHHh--cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC--------CC
Q psy12791 66 RCIASLEEAKH-GLCYSSGLGA-V-TAVTHL--LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL--------RK 132 (393)
Q Consensus 66 ~~la~~~~~~~-~i~~~~G~~a-l-~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~--------~d 132 (393)
..+++.+|.+. ..++.+|+++ + .++.+. ..++++|+++...|.+ +.+.+...|++.+.++. -|
T Consensus 120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s----~~k~~~~~g~~~~~v~~~~~~~~~~~d 195 (434)
T d2z67a1 120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS----PIKAVSFVGMNMRLVETVLDGDRVYVP 195 (434)
T ss_dssp HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH----HHHHHHHTTCEEEEECCEEETTEEECC
T ss_pred HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHH----HHHHHHHhCCcceEEEeecCCCccCCC
Confidence 34567778763 4455455444 4 444443 3478999999999985 44566778988888764 18
Q ss_pred HHHHHhhcCC-----CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccc------cCCCCCcCcEEEE
Q psy12791 133 IENLIKYIKP-----NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYY------QKSLPWGVDIVLY 201 (393)
Q Consensus 133 ~~~l~~~l~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~------~~~~~~~~di~~~ 201 (393)
++++++.+++ ++.+|++++|++++|.+.|+++|.++|+++ |+++++|++|+.+.. ..+...++|+++.
T Consensus 196 ~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~-~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~ 274 (434)
T d2z67a1 196 VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVS 274 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHh-CCeEEEeccchhhhhhccccccccccCCcceEEE
Confidence 9999998853 577888899999999999999999999999 999999999986431 1234468999999
Q ss_pred cccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 202 SLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLV--TRGLKTLPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 202 S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
|+||+++++.| .|++..+++.+.+++................+.. ....+.+....++..++++++.+.|++++..
T Consensus 275 s~hK~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~ 352 (434)
T d2z67a1 275 SSDKNLLTPIG--GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK 352 (434)
T ss_dssp EHHHHHCCCSS--CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccCCC--ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999877777 6777777777777665332222221112222222 1222334445566666677777777653221
Q ss_pred ceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhh
Q psy12791 280 KGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDA 359 (393)
Q Consensus 280 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~ 359 (393)
... +-+.. .....+.+.+..++.+....+....+.+..+. . ... .....+.
T Consensus 353 ~g~--~ll~~------------~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~---~--~l~-~~g~~~~--------- 403 (434)
T d2z67a1 353 TGG--KFLDV------------ESPIASCISVNSDPVEIAAKLYNLRVTGPRGI---K--KTD-HFGNCYL--------- 403 (434)
T ss_dssp SSC--CBCCC------------CCSSEEEEECSSCHHHHHHHHHHTTEESCEEE---C--TTC-HHHHTCS---------
T ss_pred cCc--eecCC------------CCCceeeeecCCCHHHHHHHHHHcCCeeeehh---h--hcc-ccCeeee---------
Confidence 100 00000 01233444553355554444443332111110 0 000 0000000
Q ss_pred cCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 360 LGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 360 ~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.-....++|++++..+|+++|+.+.++|+++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 0023688999999999999999999999864
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.81 E-value=3.5e-18 Score=158.49 Aligned_cols=305 Identities=15% Similarity=0.186 Sum_probs=208.4
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh-cCCC--CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL-LSAG--DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~-~~~g--d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
+..+++++.+|+++|.+.+++++||++|+ .++.++ +.+| |+|++|..+|.++. ......|+++++++.+
T Consensus 31 ~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~----~ai~~~G~~pv~vDi~~~~ 106 (371)
T d2fnua1 31 KRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATA----NMLLESGYTPVFAGIKNDG 106 (371)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHH----HHHHHTTCEEEECCBCTTS
T ss_pred HHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccc----eeeeccCcccccccccccc
Confidence 67899999999999999999999999998 666665 4445 48999999999753 4456689999999886
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC--CCCcCcEEEEcc--cc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS--LPWGVDIVLYSL--TK 205 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~--~~~~~di~~~S~--sK 205 (393)
+.+++++.+.+++++|++.|.. |...++++|.++|+++ ++++|+|.+++.+..... .....|+.+.|| +|
T Consensus 107 ~~~~~~~~~~~~~~t~avi~vh~~---G~~~~~~~i~~~~~~~-~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K 182 (371)
T d2fnua1 107 NIDELALEKLINERTKAIVSVDYA---GKSVEVESVQKLCKKH-SLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIK 182 (371)
T ss_dssp SBCGGGSGGGCCTTEEEEEEECGG---GCCCCHHHHHHHHHHH-TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred cccchhhhhhccchhhcccccccc---cccccccccccccccc-chhhccchhhccCceeccccCCcccccccccccccc
Confidence 4677888888899999977654 9999999999999999 999999999997653222 222346777777 88
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHHHHh----------------cCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q psy12791 206 YMNGHSDVVMGATVTNDDSLQARLKFLQNS----------------MGVVPSPFDCWLVTRGLKTLPCRLKEHERGSIEV 269 (393)
Q Consensus 206 ~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (393)
.++ ..+ +|+++++++++.++++..+.. +...++..+++++...++.+....++..++...+
T Consensus 183 ~l~-~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y 259 (371)
T d2fnua1 183 PIT-TAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTY 259 (371)
T ss_dssp SSC-CSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccc-ccc--ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhh
Confidence 884 444 899999989999988765431 2233677888889999999988888888888888
Q ss_pred HHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccCcccc-
Q psy12791 270 AKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADLPAEM- 347 (393)
Q Consensus 270 ~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~- 347 (393)
.+.|...+.+... .+.... ......+.+.+.. .....+.+++.|...++.....-. .+...+...
T Consensus 260 ~~~l~~~~~~~~~-~~~~~~-----------~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~-pl~~~~~~~~ 326 (371)
T d2fnua1 260 DRIFKDNPYFTPL-HPLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYK-PIYQYQLYQQ 326 (371)
T ss_dssp HHHHTTCSSEEES-GGGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCC-CGGGSHHHHH
T ss_pred ccccccccccccc-cccccc-----------ccccccccccccccchhHHHHHHHHHHHCCCCcceeCc-ccccCHHHHh
Confidence 8889877664321 111000 0112335555632 112234566666554554433211 111111100
Q ss_pred --cCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 348 --THKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 348 --~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
....+|..+.. ....|.|-++..-++++++.+.+.+.+..
T Consensus 327 ~~~~~~~pnae~~----~~~~l~LP~~~~lt~~di~~I~~~i~~~~ 368 (371)
T d2fnua1 327 LFNTAPLKSAEDF----YHAEISLPCHANLNLESVQNIAHSVLKTF 368 (371)
T ss_dssp HHCCCCCHHHHHH----HHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHH----HhCeEECcCCCCCCHHHHHHHHHHHHHHH
Confidence 11112222221 13566676677678888888888887654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.81 E-value=6.7e-18 Score=161.20 Aligned_cols=219 Identities=11% Similarity=-0.055 Sum_probs=138.6
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHH-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGA-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
++....++++.+|+++|++++++++||+++ + .++.+++++||+|+++..+|.+.+.... .+...+..+...+.+
T Consensus 64 ~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~g 142 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPYG 142 (462)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTTC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeeccccccc
Confidence 456688999999999999999999999887 5 5577889999999999999987432221 122223333322221
Q ss_pred ----------CHH---------HHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCC-
Q psy12791 132 ----------KIE---------NLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKS- 191 (393)
Q Consensus 132 ----------d~~---------~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~- 191 (393)
+.+ +++++...++.++++.+.+|..|.+.|+++|.++|+++ |++|++|++++.+....+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~-g~~l~vD~A~~~~~~~~~~ 221 (462)
T d1c4ka2 143 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHL-CDYIEFDSAWVGYEQFIPM 221 (462)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGG-BSEEEEECTTCCGGGSSGG
T ss_pred ccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHc-CCEEEEechhhccccccCc
Confidence 111 23344455677777777778899999999999999999 999999999987543221
Q ss_pred -------------CCCcCcEEEEcccccccCCCCceEEEEEecChHH--------HHHHHHHHHhc-CCCCCHHHHHH--
Q psy12791 192 -------------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSL--------QARLKFLQNSM-GVVPSPFDCWL-- 247 (393)
Q Consensus 192 -------------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~-- 247 (393)
...++|+++.|+||.++ .++. .+++..++..+ .+.++.....+ ...++......
T Consensus 222 ~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg-~~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~ 299 (462)
T d1c4ka2 222 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299 (462)
T ss_dssp GGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred CCcchhhccccccccCCccEEEEecCcccc-cccc-eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence 11245899999999994 5441 44444442222 12233222222 22222222111
Q ss_pred -HHhccC--CHHHHHHHHHHHHHHHHHHHhhCCCc
Q psy12791 248 -VTRGLK--TLPCRLKEHERGSIEVAKFLESHPCV 279 (393)
Q Consensus 248 -~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (393)
+....+ ...+.+++..+++.++++.+++.+..
T Consensus 300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~ 334 (462)
T d1c4ka2 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSM 334 (462)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111111 22334566677788888888876654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.1e-18 Score=160.58 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHhCC----C-cEEEecc-HHHHH-HHHHHhc---CCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeC
Q psy12791 60 TRRNLERCIASLEEA----K-HGLCYSS-GLGAV-TAVTHLL---SAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVD 129 (393)
Q Consensus 60 ~~~~lr~~la~~~~~----~-~~i~~~~-G~~al-~~~~~~~---~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~ 129 (393)
...++++.+.+.++. + +.|++|+ |+.++ .++..++ ++||+|++....+.+.. +...++..|..+..+.
T Consensus 37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~ 114 (382)
T d2bkwa1 37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVR 114 (382)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhh--hhhhcccccccccccc
Confidence 345666777777663 2 4566654 45567 6666665 68999999887776542 4445666777766554
Q ss_pred CC------CHHHHHhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCC-CcCcEEE
Q psy12791 130 LR------KIENLIKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLP-WGVDIVL 200 (393)
Q Consensus 130 ~~------d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~-~~~di~~ 200 (393)
.. +.+++++.+. .+++++++++.+|.||...|++++.+.|+++ .++++++|.+++.+.....+. .++|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~ 194 (382)
T d2bkwa1 115 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFAL 194 (382)
T ss_dssp CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred ccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEe
Confidence 32 4666666553 4689999999999999999999999998876 369999999999876543333 5899999
Q ss_pred EcccccccCCCCceEEEEEecChHHHHHHHHHHHh--------------------------cCCCCCHHHHHHHHhccCC
Q psy12791 201 YSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--------------------------MGVVPSPFDCWLVTRGLKT 254 (393)
Q Consensus 201 ~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 254 (393)
.|.+|+++|++| +|+++.+ +++.+.+...... +..+++....+.+..+++.
T Consensus 195 ~s~~K~l~gP~G--~g~l~vs-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~ 271 (382)
T d2bkwa1 195 TASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE 271 (382)
T ss_dssp EESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred ecccccCcCCCc--hhhhhcc-HHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHH
Confidence 999999989999 9999998 7776655322110 1112222222222222322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccc
Q psy12791 255 -----LPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFR 329 (393)
Q Consensus 255 -----~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (393)
...+.++..+....+.+.+....... .....+.. .....++.|.++ +.++...++++ .+
T Consensus 272 ~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~----------~~s~~v~~~~~~-~~~~~~~~L~~---~g 335 (382)
T d2bkwa1 272 ILEEGLHKRWDLHREMSDWFKDSLVNGLQLT--SVSRYPSN----------MSAHGLTAVYVA-DPPDVIAFLKS---HG 335 (382)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCE--ESSCSSST----------TBCSSCEEEECS-CHHHHHHHHHH---TT
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhccccc--ccccCchh----------ccCCcEEEEcCC-CHHHHHHHHHH---CC
Confidence 33344444455556666665443322 11111110 001355677774 55565555553 34
Q ss_pred cccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEE-ecCCChHHHHHHHHHHHHHhh
Q psy12791 330 CAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLS-VGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 330 ~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls-~~~~~~~~~i~~l~~al~~~~ 391 (393)
+.++.|.-.. ..+..+|+| +|+.++++.++.+.++|+.+.
T Consensus 336 i~i~~G~~~~----------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 336 VVIAGGIHKD----------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp EECBCCCCTT----------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred eEEECCCChh----------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 4444432110 125789999 888887777777777776553
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.80 E-value=2.5e-19 Score=166.62 Aligned_cols=317 Identities=11% Similarity=0.094 Sum_probs=195.7
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEEeccH-HHHH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLCYSSG-LGAV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~ 104 (393)
+.-|...++.+.+++... ..+.++.......+++|+.|+++++.+ ..|++++| +.++ .++..++.+|+++++..
T Consensus 23 ~PGP~~v~~~Vl~am~~~--~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~ 100 (377)
T d1vjoa_ 23 GPGPSNAHPSVLQAMNVS--PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV 100 (377)
T ss_dssp SSSCCCCCHHHHHHHSSC--CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cCCCCCCCHHHHHHhCcC--CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceee
Confidence 344444455566655332 122232222356788999999999986 47777655 4457 77778899999999888
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHH-hhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLI-KYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~-~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
..|.+. .+...+...+.....+... +.+... ....++++++.+++.+|.||.+.|+++|.++|+++ |++++
T Consensus 101 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~-g~~~~ 177 (377)
T d1vjoa_ 101 AGYFGN--RLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREF-GTLLL 177 (377)
T ss_dssp SSHHHH--HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHH-TCEEE
T ss_pred echhhh--hhhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhc-cceEE
Confidence 777643 3444555666655554432 333333 33345789999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCCC-CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH--------------h------cC
Q psy12791 179 LDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN--------------S------MG 237 (393)
Q Consensus 179 vDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~--------------~------~~ 237 (393)
+|.+++.+....+++ .+.|+++.|.+|+++|++| +|+++.+ +..++....... . ..
T Consensus 178 vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (377)
T d1vjoa_ 178 VDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG--ASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYH 254 (377)
T ss_dssp EECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS--CEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCC
T ss_pred EecchhhhhhhhcccccccceeeecccccccCCCE--EEEecch-hhHHhhhhccCCCCcceeeccchhhhccCcccccc
Confidence 999998776544443 5889999999999988888 8888877 666664431110 0 11
Q ss_pred CCCCHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc
Q psy12791 238 VVPSPFDCWLVTRG-----LKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN 312 (393)
Q Consensus 238 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (393)
..........+... ......+.++..+....+.+.+....... + .+ +. .....++.|.++
T Consensus 255 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~-~-~~-----~~--------~rs~~v~~~~~p 319 (377)
T d1vjoa_ 255 HTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSL-H-VE-----KE--------YRLPTLTTVCIP 319 (377)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB-S-SC-----GG--------GBCSSEEEEECC
T ss_pred cccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCcee-e-cC-----hH--------hcCCeEEEEECC
Confidence 11111111111111 12234455555566677777776543211 0 00 00 112467788885
Q ss_pred CCHHHHHHHHHhc-CccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEE-ecCCChHHHHHHHHHHHHHh
Q psy12791 313 GGAEETRIFLESL-LIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLS-VGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 313 ~~~~~~~~~~~~l-~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls-~~~~~~~~~i~~l~~al~~~ 390 (393)
+ ....+.+.+.| +..++.+..|... ..++.+|+| +|+.++.++|+++.++|+++
T Consensus 320 ~-~~~~~~l~~~L~~~~gI~v~~G~~~-----------------------~~~~~~Ris~~g~~~t~edi~~lv~al~~~ 375 (377)
T d1vjoa_ 320 D-GVDGKAVARRLLNEHNIEVGGGLGE-----------------------LAGKVWRVGLMGFNSRKESVDQLIPALEQV 375 (377)
T ss_dssp T-TCCHHHHHHHHHHHHCEECEECCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHhcCCEEEecCccc-----------------------ccCCEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 2 11223333333 2224444333210 125789999 69999999999999999987
Q ss_pred hc
Q psy12791 391 CK 392 (393)
Q Consensus 391 ~~ 392 (393)
.|
T Consensus 376 l~ 377 (377)
T d1vjoa_ 376 LR 377 (377)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.79 E-value=1e-18 Score=163.16 Aligned_cols=193 Identities=13% Similarity=0.176 Sum_probs=138.0
Q ss_pred CCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--cEEEeccH-HHHH-HHHHHhcCCCCeEEEcC
Q psy12791 29 VIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAK--HGLCYSSG-LGAV-TAVTHLLSAGDHIISGD 104 (393)
Q Consensus 29 ~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~--~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~ 104 (393)
+.-|...++.+.+++.... .+.++.-......++|+.|+++++.+ +.|++++| +.++ .++..++.+|+++++..
T Consensus 22 ~PGP~~~~~~V~~Am~~~~--~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~ 99 (388)
T d2ch1a1 22 GPGPSNCSKRVLTAMTNTV--LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAV 99 (388)
T ss_dssp SSSSCCCCHHHHHHTTSCC--CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred eCCCCCCCHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccc
Confidence 4455555566666654431 12222212356788999999999987 46766654 5567 77778889999998877
Q ss_pred CCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhc-CCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEE
Q psy12791 105 DVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYI-KPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLV 178 (393)
Q Consensus 105 ~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~li 178 (393)
..+.+. .+...++..+...+.+... +.++.+... ..+++++++++.+|.||...|.+++.++|+++ +++++
T Consensus 100 ~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~-~~~~~ 176 (388)
T d2ch1a1 100 NGIWAE--RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQH-DCLLI 176 (388)
T ss_dssp SSHHHH--HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT-TCEEE
T ss_pred cccccc--cchhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccc-cceee
Confidence 666543 2344456667666665543 444444443 35689999999999999999999999999999 99999
Q ss_pred EeCccCcccccCCC-CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHH
Q psy12791 179 LDNTFLTAYYQKSL-PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARL 229 (393)
Q Consensus 179 vDea~~~~~~~~~~-~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~ 229 (393)
+|.+++.+.....+ ..++|+++.|.+|+++|++| +|+++.+ +...+.+
T Consensus 177 vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G--~g~~~~~-~~~~~~~ 225 (388)
T d2ch1a1 177 VDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG--ITPISIS-PKALDVI 225 (388)
T ss_dssp EECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS--CEEEEEC-HHHHHHH
T ss_pred eeeeecccccccchhccCceEEEEccccccCCCCe--EEEEecc-HHHHHhh
Confidence 99999977653333 36899999999999989999 8888887 6665544
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=3.5e-17 Score=148.91 Aligned_cols=313 Identities=14% Similarity=0.072 Sum_probs=187.8
Q ss_pred CCCCCCCCCCccCCeeeeCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCcEEE-eccHHHHH-HHHHHhcCCCCeEE
Q psy12791 24 WRSQCVIPPIILSTTFKQNTPGQPPQGFEYSRSNNPTRRNLERCIASLEEAKHGLC-YSSGLGAV-TAVTHLLSAGDHII 101 (393)
Q Consensus 24 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~lr~~la~~~~~~~~i~-~~~G~~al-~~~~~~~~~gd~vl 101 (393)
..|-++.|+.+++|.+.+++.+... .+....+.++..+++|+.+|+++|.+..++ +++|+++. .++...+.+++.++
T Consensus 4 ~~~f~s~n~~g~~P~v~~A~~~a~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~ 82 (345)
T d1v72a1 4 ALGFSSDNIAGASPEVAQALVKHSS-GQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIY 82 (345)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTTS-SCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEE
T ss_pred CcCcCCCCCCCCCHHHHHHHHHHhc-cCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccc
Confidence 4564578888888888887765422 222223467899999999999999986555 57788886 77777788888888
Q ss_pred EcCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCC------Cc-EEEEecCCCCcccccC---HHHHH
Q psy12791 102 SGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPN------TK-MVWIENPTNPLMTVFD---VKAIS 166 (393)
Q Consensus 102 ~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~------~~-~v~l~~p~nptG~~~~---~~~l~ 166 (393)
+....+..... ........+..+..++.. ++++++..+.+. +. .++...++|+.|...+ ++++.
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 161 (345)
T d1v72a1 83 CHPASHINNDE-CGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIG 161 (345)
T ss_dssp ECTTSHHHHSS-TTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHH
T ss_pred cccccceeeec-hhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHH
Confidence 87776543211 112223445555555442 788888887643 22 3444667777777665 66778
Q ss_pred HHHHhCCCcEEEEeCccCccccc---CCCC---C--cCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC
Q psy12791 167 AVVKQHPDILLVLDNTFLTAYYQ---KSLP---W--GVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV 238 (393)
Q Consensus 167 ~l~~~~~~~~livDea~~~~~~~---~~~~---~--~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 238 (393)
++|+++ |+++++|+++..+... .... . ..+..+.+.+|.. .... .+.+... ..............+.
T Consensus 162 ~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 236 (345)
T d1v72a1 162 DVCKSS-SLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAA-EAIVLFN-TSLATEMSYRRKRAGH 236 (345)
T ss_dssp HHHHHT-TCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSC-EEEEESS-GGGHHHHHHHHHHTTC
T ss_pred HHHHhc-CceeeecccccceeccccccCHHHhhccccccccccCccccc--cccc-cccccch-hhhhhhcccccccccc
Confidence 889999 9999999999863221 1111 1 2345555545543 2322 2333333 3333322222222222
Q ss_pred -CC-CHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC
Q psy12791 239 -VP-SPFDCWLVTRGLK--TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG 314 (393)
Q Consensus 239 -~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
.. ....+......+. .......+.......+.+.+.+++++. +..|. ..+++.+.++
T Consensus 237 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~p~----------------~~niv~~~~~-- 297 (345)
T d1v72a1 237 LSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVE-VLGGT----------------EANILFCRLD-- 297 (345)
T ss_dssp CCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-EESCC----------------CSSEEEEEEC--
T ss_pred ccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcE-eccCC----------------CccEEEEEcC--
Confidence 22 2222222222222 233445555566677788888888764 33332 1467888883
Q ss_pred HHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 315 AEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
.+..++++++ ++.+..+ + ..++.|||+++..+|+|++|.+.++|++.+
T Consensus 298 ~~~~~~L~~~----gi~v~~~--------~-----------------~~~~~lR~~~~~~~T~edid~~le~lr~aa 345 (345)
T d1v72a1 298 SAMIDALLKA----GFGFYHD--------R-----------------WGPNVVRFVTSFATTAEDVDHLLNQVRLAA 345 (345)
T ss_dssp HHHHHHHHHT----TCBCBCS--------S-----------------SSTTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc----CCCcccc--------C-----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4555554443 3322111 0 126899999999999999999999998753
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=1.3e-18 Score=165.40 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=136.0
Q ss_pred HHHHHHHHhCCC---cEEEeccHHHH-H-HHHHHh---cCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC----
Q psy12791 64 LERCIASLEEAK---HGLCYSSGLGA-V-TAVTHL---LSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR---- 131 (393)
Q Consensus 64 lr~~la~~~~~~---~~i~~~~G~~a-l-~~~~~~---~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~---- 131 (393)
+.+.+++++|.+ ..++++.|+.+ + .++.+. ..+++.|+++...|.+ +...+...|++.+.++..
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s----~~~a~~~~g~~~~~v~~~~~~~ 174 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS----CFKSMVTAGFEPVVIENVLEGD 174 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHH----HHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHH----HHHHHHHcCCeeEEEEeeccCc
Confidence 345567777865 35555555544 3 333332 3567899999999985 556678889998888641
Q ss_pred ----CHHHHHhhcC----CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccccc--CC----CC-CcC
Q psy12791 132 ----KIENLIKYIK----PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQ--KS----LP-WGV 196 (393)
Q Consensus 132 ----d~~~l~~~l~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~--~~----~~-~~~ 196 (393)
|++++++++. +++.+|++++|+|++|.+.|+++|.++|+++ |+++++|++++.+... .. .. .++
T Consensus 175 ~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~~~~~~~v 253 (445)
T d3bc8a1 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQGARVGRI 253 (445)
T ss_dssp EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHHHSCC
T ss_pred ccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHh-CCcEEEEccchhhhhhccccchhccCcCCc
Confidence 7888888774 3578899999999999999999999999999 9999999999864321 01 11 247
Q ss_pred cEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHh
Q psy12791 197 DIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRG--LKTLPCRLKEHERGSIEVAKFLE 274 (393)
Q Consensus 197 di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~ 274 (393)
|+++.|+||+++++.| +|+++.++..+.+.+.......+........+..... .+......+...++...+.+.|+
T Consensus 254 d~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~ 331 (445)
T d3bc8a1 254 DAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK 331 (445)
T ss_dssp CEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCccccccCCC--CceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Confidence 9999999998866666 7888887777777665433322222222222222221 12233344444455555555554
Q ss_pred h
Q psy12791 275 S 275 (393)
Q Consensus 275 ~ 275 (393)
.
T Consensus 332 ~ 332 (445)
T d3bc8a1 332 K 332 (445)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.74 E-value=9.6e-17 Score=151.93 Aligned_cols=213 Identities=16% Similarity=0.045 Sum_probs=146.0
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCC
Q psy12791 52 EYSRSNNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDL 130 (393)
Q Consensus 52 ~y~~~~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~ 130 (393)
.|+ .+|...+|++.+|+++|.+.+++++||+.|. .++.+++++||+|+.... |.++ .......|+..+.+..
T Consensus 70 ~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~----~~~i~~~g~~~~~~~~ 142 (456)
T d1c7ga_ 70 AYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTT----RFHQEKNGATFVDIVR 142 (456)
T ss_dssp CSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHH----HHHHHHTTEEEEECBC
T ss_pred hcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHH----HHHHHHcCceeeeccc
Confidence 355 4799999999999999999999999999997 888889999998887654 3322 1223445666654432
Q ss_pred ---------------CCHHHHHhhcCCC----CcEEEEecCCCCccc-ccC---HHHHHHHHHhCCCcEEEEeCccCccc
Q psy12791 131 ---------------RKIENLIKYIKPN----TKMVWIENPTNPLMT-VFD---VKAISAVVKQHPDILLVLDNTFLTAY 187 (393)
Q Consensus 131 ---------------~d~~~l~~~l~~~----~~~v~l~~p~nptG~-~~~---~~~l~~l~~~~~~~~livDea~~~~~ 187 (393)
.|++++++.+++. +.++++++++|+.|- +++ +++|.++|++| |+.+++|+++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~-~~~~~~D~a~~~~~ 221 (456)
T d1c7ga_ 143 DEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTY-GIKIFYDATRCVEN 221 (456)
T ss_dssp GGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHH
T ss_pred cccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHc-CCEEEEEcchhhcc
Confidence 1788888888643 458889999998764 444 77889999999 99999999986421
Q ss_pred c-----------cCCCC-------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCC-----CCCHHH
Q psy12791 188 Y-----------QKSLP-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGV-----VPSPFD 244 (393)
Q Consensus 188 ~-----------~~~~~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 244 (393)
. ...+. ..+|+++.|++|.++ .++ +|+++++++.+.++++......+. ..+...
T Consensus 222 a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~-~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~ 298 (456)
T d1c7ga_ 222 AYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCL-VNI--GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRD 298 (456)
T ss_dssp HHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSS--CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHH
T ss_pred hhhhcccccccCCCChhhhccccccccccEEEecccccc-ccc--eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHH
Confidence 0 00100 136899999999984 444 799999888898888765433222 122222
Q ss_pred HHHHHhcc---CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 245 CWLVTRGL---KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 245 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
...+...+ .. .+..++..++.+++.+.|.+.
T Consensus 299 ~~a~a~~l~e~~~-~~~l~~r~~~~~~L~e~L~~~ 332 (456)
T d1c7ga_ 299 MEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLREA 332 (456)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhc
Confidence 22221111 12 223445566678888888764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.6e-16 Score=145.39 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=126.8
Q ss_pred chHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--CH
Q psy12791 59 PTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--KI 133 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--d~ 133 (393)
....+.++.|.++++.+ +.+++++| +.++ .++..++++||+|++....+.+. .+...++.+|.++..++.+ +.
T Consensus 33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~--~~~~~a~~~~~~~~~~~~~~g~~ 110 (348)
T d1iuga_ 33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSE--RFYEIALEAGLVVERLDYPYGDT 110 (348)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHH--HHHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHH--HHHHHHHhcCcccccccccCCCc
Confidence 45678899999999987 55555444 5568 77788899999998877765443 3556678888877776553 21
Q ss_pred HHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhC-CCcEEEEeCccCcccccCCCC-CcCcEEEEcccccccCCC
Q psy12791 134 ENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQH-PDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMNGHS 211 (393)
Q Consensus 134 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK~~~G~~ 211 (393)
...+.....+++.|+++|..+.||.+.|+++|.++|+++ +++++++|.+++.+....+++ .+.|+++.|.+|+++|+|
T Consensus 111 ~~~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gpp 190 (348)
T d1iuga_ 111 PRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPP 190 (348)
T ss_dssp CCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCS
T ss_pred cccccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCC
Confidence 122333455789999999999999999999999999987 468999999998766544443 479999999999998999
Q ss_pred CceEEEEEecChHHHHHH
Q psy12791 212 DVVMGATVTNDDSLQARL 229 (393)
Q Consensus 212 G~r~G~~~~~~~~~~~~~ 229 (393)
| +|+++.+ ++.++++
T Consensus 191 G--~~~v~~s-~~~le~~ 205 (348)
T d1iuga_ 191 G--LGFVALS-PRALERL 205 (348)
T ss_dssp C--EEEEEEC-HHHHHTC
T ss_pred c--eeeeeec-hHHHhhh
Confidence 9 8999998 6666653
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.70 E-value=2.6e-16 Score=141.94 Aligned_cols=308 Identities=13% Similarity=0.055 Sum_probs=172.8
Q ss_pred CCCCCCccCCeeeeCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCCC-cEEEeccH-HHHH-HHHHHhcCCCCeEEEc
Q psy12791 28 CVIPPIILSTTFKQNTPGQPP-QGFEYSRSNNPTRRNLERCIASLEEAK-HGLCYSSG-LGAV-TAVTHLLSAGDHIISG 103 (393)
Q Consensus 28 ~~~~p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~lr~~la~~~~~~-~~i~~~~G-~~al-~~~~~~~~~gd~vl~~ 103 (393)
.|.||.++.|.+.+++.+... ....|+ +++..+++|+++|+++|.+ +.|++|+| ++++ .++..+..+++.+++.
T Consensus 5 ~nd~~~g~~P~v~eAl~~~~~~~~~~y~--~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~ 82 (340)
T d1svva_ 5 VNDYSVGMHPKILDLMARDNMTQHAGYG--QDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIAT 82 (340)
T ss_dssp SCSCSSCCCHHHHHHHHHHTTCCCCSTT--CSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHhhcCCCCCC--CCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccc
Confidence 478899888888877654321 122232 5678889999999999987 46666655 5566 7778888999999988
Q ss_pred CCCccchHHHHHHhcccCCcEEEeeCCC---CHHHHHhhc------CCCCcEEEEecCCCCcccccC---HHHHHHHHHh
Q psy12791 104 DDVYGGTYRYFAQVAPKIGLEVDFVDLR---KIENLIKYI------KPNTKMVWIENPTNPLMTVFD---VKAISAVVKQ 171 (393)
Q Consensus 104 ~~~y~~~~~~~~~~~~~~g~~v~~~~~~---d~~~l~~~l------~~~~~~v~l~~p~nptG~~~~---~~~l~~l~~~ 171 (393)
.+.|.+... ...........+...+.. +.+...... ...+..++++.++|++|.+.+ +..+...+++
T Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (340)
T d1svva_ 83 QLGHISTHE-TGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKE 161 (340)
T ss_dssp TTSHHHHSS-TTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH
T ss_pred cccceeeee-cccccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccccc
Confidence 887753211 111112222222222221 222221211 112334444444444566655 5566788888
Q ss_pred CCCcEEEEeCccCcccccCCCC--------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-hcCCCCCH
Q psy12791 172 HPDILLVLDNTFLTAYYQKSLP--------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-SMGVVPSP 242 (393)
Q Consensus 172 ~~~~~livDea~~~~~~~~~~~--------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~~~~~~~~ 242 (393)
+ +.++++|+++.......... ...++...+..|.. +.. +.++.... ............ ..+.....
T Consensus 162 ~-g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (340)
T d1svva_ 162 H-GLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMF--GEALIILN-DALKPNARHLIKQRGALMAKG 236 (340)
T ss_dssp H-TCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSS--CEEEEECS-GGGCTTHHHHHHHTTCCCTTT
T ss_pred c-cceeeeeccceeeeecccccccccccccccceeeecCCcccc-ccc--cccccccc-hhhhhhhhhhcccccCccchh
Confidence 9 99999999997644332211 12345555555554 233 36666654 433333332222 22222222
Q ss_pred -HHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHH
Q psy12791 243 -FDCWLVTRGLK--TLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETR 319 (393)
Q Consensus 243 -~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
.....+...++ ......++...++..+...|+... +. +..|. ..+++.+.++ .+..+
T Consensus 237 ~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~-~~~p~----------------~~~~v~~~~~--~~~~~ 296 (340)
T d1svva_ 237 WLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACG-IR-LAWPS----------------ASNQLFPILE--NTMIA 296 (340)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CC-BSSCC----------------SSSEECBEEE--HHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCC-Ce-eecCC----------------CceEEEEeCC--HHHHH
Confidence 22222222222 233345555566667777777643 22 12222 2456777773 46666
Q ss_pred HHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 320 IFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 320 ~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
++++.+...++.... ..+++||+|+++.+|+++||++.++|+++
T Consensus 297 ~l~~~~~~~~~~~~~---------------------------~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 297 ELNNDFDMYTVEPLK---------------------------DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp HHTTTEECEEEEEET---------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccccC---------------------------CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 666655433222111 12589999999999999999999999874
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=3.4e-16 Score=147.80 Aligned_cols=289 Identities=12% Similarity=-0.008 Sum_probs=181.8
Q ss_pred HHHHHHHHHhCCCc-------EEEeccHHHHH-HHHHHhc-----------CC-CCeEEEcCCCccchHHHHHHhcccCC
Q psy12791 63 NLERCIASLEEAKH-------GLCYSSGLGAV-TAVTHLL-----------SA-GDHIISGDDVYGGTYRYFAQVAPKIG 122 (393)
Q Consensus 63 ~lr~~la~~~~~~~-------~i~~~~G~~al-~~~~~~~-----------~~-gd~vl~~~~~y~~~~~~~~~~~~~~g 122 (393)
++...||+++|.++ .+++++|+.|+ .++.+.- .. ...++++...|. .+.++++..|
T Consensus 97 ~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~----s~~Kaa~~~g 172 (450)
T d1pmma_ 97 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQI----CWHKFARYWD 172 (450)
T ss_dssp HHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCH----HHHHHHHHTT
T ss_pred HHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHH----HHHHHHHHcC
Confidence 34456888888652 46777777775 4443321 11 234677776666 4788899999
Q ss_pred cEEEeeCCC------CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHH------HhCCCcEEEEeCccCcccc--
Q psy12791 123 LEVDFVDLR------KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVV------KQHPDILLVLDNTFLTAYY-- 188 (393)
Q Consensus 123 ~~v~~~~~~------d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~------~~~~~~~livDea~~~~~~-- 188 (393)
++++.++.+ |++++++.++++|.+|+.+.++|.||.+-|+++|.+++ +++ +++++||.|++.+..
T Consensus 173 i~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~-~i~lHVDAA~gG~~~p~ 251 (450)
T d1pmma_ 173 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPF 251 (450)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHH
T ss_pred CCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhcc-CcEEEeehhhccceeee
Confidence 999999875 79999999999999999999999999999988887775 557 999999999987542
Q ss_pred cC---CCC---CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHH-Hh-------cC---CCCC--HHHHHHHH
Q psy12791 189 QK---SLP---WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQ-NS-------MG---VVPS--PFDCWLVT 249 (393)
Q Consensus 189 ~~---~~~---~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~-~~-------~~---~~~~--~~~~~~~~ 249 (393)
.. ... .++|.+..|.||++.++.| +|+++.+++.......... .+ +. +-.. ....++..
T Consensus 252 ~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l 329 (450)
T d1pmma_ 252 VAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF 329 (450)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred echhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence 11 111 2689999999999867778 8999998665432211000 00 01 1111 11122222
Q ss_pred --hccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCC---HHHHHHHHHh
Q psy12791 250 --RGLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGG---AEETRIFLES 324 (393)
Q Consensus 250 --~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 324 (393)
.+.+.+....++..+.++.+.+.|++.+.++.+. ++-+ ...-++++|.+.+. .-....+.+.
T Consensus 330 ~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~-~~~p------------~~~l~~V~Fr~~~~~~~~~~~~~l~~~ 396 (450)
T d1pmma_ 330 LRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFIC-TGRP------------DEGIPAVCFKLKDGEDPGYTLYDLSER 396 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEE-ECCT------------TTBSSEEEEEECTTCCCSSCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-CCCC------------CCceEEEEEecCCcccCCCCHHHHHHH
Confidence 2334466677777888899999999888765332 2210 00125688887521 0112233344
Q ss_pred cCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 325 LLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 325 l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
|...+..+.. .. .|+. ......+|+++....+.++++.|.+.|+++.
T Consensus 397 L~~~Gw~v~~-----~~-~p~~--------------~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v 443 (450)
T d1pmma_ 397 LRLRGWQVPA-----FT-LGGE--------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASL 443 (450)
T ss_dssp HHTTTCBCCE-----EE-CCTT--------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCeeec-----cC-cCCC--------------cCCcEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 4433211110 00 0100 0124579999998888887777777766543
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.68 E-value=1.7e-15 Score=143.79 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=189.8
Q ss_pred CchHHHHHHH----HHHHhCCCc-----------EEEeccHHHHH-HHHHHh----c------CCC---------CeEEE
Q psy12791 58 NPTRRNLERC----IASLEEAKH-----------GLCYSSGLGAV-TAVTHL----L------SAG---------DHIIS 102 (393)
Q Consensus 58 ~~~~~~lr~~----la~~~~~~~-----------~i~~~~G~~al-~~~~~~----~------~~g---------d~vl~ 102 (393)
.|...+++.. +++++|.++ .+++++|+.+. .++.+. + ..| -.|++
T Consensus 108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~ 187 (476)
T d1js3a_ 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence 3555555554 566677642 46777778774 444221 1 111 14678
Q ss_pred cCCCccchHHHHHHhcccCCcEEEeeCCC-----CHHHHHhhcCCC------CcEEEEecCCCCcccccCHHHHHHHHHh
Q psy12791 103 GDDVYGGTYRYFAQVAPKIGLEVDFVDLR-----KIENLIKYIKPN------TKMVWIENPTNPLMTVFDVKAISAVVKQ 171 (393)
Q Consensus 103 ~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-----d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~ 171 (393)
++-+|.+ +.+++...|+.+..++.+ |+++|++.++++ +-+|+.+..++.||.+-|+++|.++|++
T Consensus 188 s~~~H~S----i~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~ 263 (476)
T d1js3a_ 188 SDQAHSS----VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263 (476)
T ss_dssp ETTCCHH----HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred cccccHH----HHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHh
Confidence 8888874 678888899999999886 789998888642 3467778999999999999999999999
Q ss_pred CCCcEEEEeCccCcccccCCCC-------CcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHH--------HHh-
Q psy12791 172 HPDILLVLDNTFLTAYYQKSLP-------WGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFL--------QNS- 235 (393)
Q Consensus 172 ~~~~~livDea~~~~~~~~~~~-------~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~--------~~~- 235 (393)
+ ++|++||.+|+.+....+.. ..+|.+..++||++..+.+ .|.++.+++......-.. ...
T Consensus 264 ~-~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 264 E-DIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp T-TCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC------------C
T ss_pred c-CcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhccccccc
Confidence 9 99999999998754322211 2579999999999954444 777777765544321100 000
Q ss_pred ------------cCCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcC
Q psy12791 236 ------------MGVVPSPFDCWLVTR--GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWS 301 (393)
Q Consensus 236 ------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~ 301 (393)
.+.....+..++..+ +.+.+...+++..+.++++.+.+++.|.++.+..|.
T Consensus 341 ~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~--------------- 405 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT--------------- 405 (476)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC---------------
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc---------------
Confidence 011111233333333 334567778888888999999999988876443333
Q ss_pred CCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEec-CCChHHHH
Q psy12791 302 GTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVG-VEGYTDLI 380 (393)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i 380 (393)
-+++.|+.++..+.++++++++...+... .+ +... ....++|++++ ..++++++
T Consensus 406 --l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~-----~s----~t~~--------------~g~~~lR~~i~n~~Tt~~di 460 (476)
T d1js3a_ 406 --LGLVCFRLKGSDGLNEALLERINSARKIH-----LV----PCRL--------------RGQFVLRFAICSRKVESGHV 460 (476)
T ss_dssp --SSEEEEEESSCHHHHHHHHHHHHHHTSCB-----CE----EEEE--------------TTEEEEEEECCCTTCCHHHH
T ss_pred --eEEEEEEccCChHHHHHHHHHHHhcCCEE-----Ee----eeeE--------------CCEEEEEEEeCCCCCCHHHH
Confidence 36788888766677788888775422110 00 0000 01348999998 55788889
Q ss_pred HHHHHHHHHhhc
Q psy12791 381 ADLDQALRKACK 392 (393)
Q Consensus 381 ~~l~~al~~~~~ 392 (393)
+.+.+.++++++
T Consensus 461 d~~~~~i~~~a~ 472 (476)
T d1js3a_ 461 RLAWEHIRGLAA 472 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.59 E-value=6.6e-14 Score=126.43 Aligned_cols=237 Identities=12% Similarity=0.118 Sum_probs=160.8
Q ss_pred HHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH-HHHhcccCCcEEEeeCCC------CHHHH
Q psy12791 66 RCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY-FAQVAPKIGLEVDFVDLR------KIENL 136 (393)
Q Consensus 66 ~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~-~~~~~~~~g~~v~~~~~~------d~~~l 136 (393)
+...++++++ -.+-..||+.|. .++.++++|||+|+..++..++.... ..........+.+.++.+ |.+++
T Consensus 76 ~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l 155 (405)
T d1kl1a_ 76 ERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDV 155 (405)
T ss_dssp HHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHH
T ss_pred HHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHH
Confidence 4456678988 477889999996 88889999999999998876652100 000011123566666654 78888
Q ss_pred HhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEEEEcccccccCC
Q psy12791 137 IKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIVLYSLTKYMNGH 210 (393)
Q Consensus 137 ~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~~~S~sK~~~G~ 210 (393)
++.+.. ++++|++..-.+| ..+|++++.++|++. |+++++|.++..+ .+++|++. +|+++.|.||.+.||
T Consensus 156 ~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~v-ga~l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlrGP 231 (405)
T d1kl1a_ 156 REKARLHRPKLIVAAASAYP--RIIDFAKFREIADEV-GAYLMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLRGP 231 (405)
T ss_dssp HHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTCCC
T ss_pred HHHHHhhCcceEEecccccc--cccChHHHHHHHhhh-CCEEecchhhHhhhhhhhhcCChhhh-hhheeccccccccCC
Confidence 887653 6899999766655 477899999999999 9999999999974 34577754 899999999999766
Q ss_pred CCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhhCCCcceEeC
Q psy12791 211 SDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLVTR----GLKTLPCRLKEHERGSIEVAKFLESHPCVKGVLH 284 (393)
Q Consensus 211 ~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~ 284 (393)
|+|.++++ +++.+++.....+ .++......+..+.. .........++..+|++.|++.|.+... . +.
T Consensus 232 ---rgg~I~~~-~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~-~-vv- 304 (405)
T d1kl1a_ 232 ---RGGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF-T-LV- 304 (405)
T ss_dssp ---SCEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-E-EG-
T ss_pred ---CCceEEec-chhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc-e-ee-
Confidence 68999987 7888877654432 122222222222111 1223455677778999999999987542 1 21
Q ss_pred CCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 285 PGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
.+.. -..++.+.+.+ +...+++.+++..+
T Consensus 305 ~ggT--------------d~H~vlvdl~~~~~~g~~ae~~Le~agI 336 (405)
T d1kl1a_ 305 SGGT--------------DNHLLLVDLRPQQLTGKTAEKVLDEVGI 336 (405)
T ss_dssp GGSC--------------SSSEEEEECGGGTCCHHHHHHHHHHHTE
T ss_pred cCCC--------------ccceeeccccccCCcHHHHHHHHHHcCe
Confidence 1111 13567777742 55677777776654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=4.2e-13 Score=121.76 Aligned_cols=237 Identities=15% Similarity=0.126 Sum_probs=159.9
Q ss_pred HHHHHHhCCC-cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcc--cCCcEEEeeCCC-----CHHHH
Q psy12791 66 RCIASLEEAK-HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAP--KIGLEVDFVDLR-----KIENL 136 (393)
Q Consensus 66 ~~la~~~~~~-~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~--~~g~~v~~~~~~-----d~~~l 136 (393)
+...++++++ ..+-..||+.|. .++.++++|||+|+..+..+++.... ..... ....+.+.++.+ |.+++
T Consensus 79 ~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlsh-g~~~~~~g~~~~~~~y~~d~~~~IDyd~l 157 (416)
T d1dfoa_ 79 DRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTH-GSPVNFSGKLYNIVPYGIDATGHIDYADL 157 (416)
T ss_dssp HHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGG-TCTTSHHHHHSEEEEECBCSSSSBCHHHH
T ss_pred HHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccc-cccccccCceEEEEecccCCccCccHHHH
Confidence 4445678988 477789999996 88889999999999999888763210 00011 112355555443 78888
Q ss_pred HhhcC-CCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEEEEcccccccCC
Q psy12791 137 IKYIK-PNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIVLYSLTKYMNGH 210 (393)
Q Consensus 137 ~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~~~S~sK~~~G~ 210 (393)
++... .++++|++..-.+| ...|++++.++|++. |+++++|.++..+ .+..|+.+ +|++..|.||.+.||
T Consensus 158 ~~~a~~~kPklIi~G~S~y~--r~~d~~~~reiad~v-ga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGP 233 (416)
T d1dfoa_ 158 EKQAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSI-GAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGP 233 (416)
T ss_dssp HHHHHHHCCSEEEEECSSCC--SCCCHHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCC
T ss_pred HHHHHHhccceEEecccccc--cccCHHHHHHHHHhc-CceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCC
Confidence 77664 37999999765555 688999999999999 9999999999974 34577776 699999999999766
Q ss_pred CCceEEEEEecC--hHHHHHHHHHHHh--cCCCCCHHHHHHH---Hhcc-CCHHHHHHHHHHHHHHHHHHHhhCCCcceE
Q psy12791 211 SDVVMGATVTND--DSLQARLKFLQNS--MGVVPSPFDCWLV---TRGL-KTLPCRLKEHERGSIEVAKFLESHPCVKGV 282 (393)
Q Consensus 211 ~G~r~G~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 282 (393)
|+|++++++ +++.+++.....+ .++.....-+..+ .... .......++..+|++.|++.|.+... . +
T Consensus 234 ---rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~-~-i 308 (416)
T d1dfoa_ 234 ---RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGY-K-V 308 (416)
T ss_dssp ---SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC-E-E
T ss_pred ---CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCc-c-c
Confidence 789999863 5777777654432 2222222222211 1112 23456777888999999999987532 1 2
Q ss_pred eCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
. .+.. -..++.+.+.+ +..+++..+++..+
T Consensus 309 v-~ggT--------------dnHlvlvdl~~~~~~G~~a~~~Le~~gI 341 (416)
T d1dfoa_ 309 V-SGGT--------------DNHLFLVDLVDKNLTGKEADAALGRANI 341 (416)
T ss_dssp G-GGSC--------------SSSEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred c-cCCC--------------CCceeEEEecccCCCHHHHHHHHHHcCe
Confidence 1 1100 13567777742 45777777777665
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.4e-14 Score=136.31 Aligned_cols=213 Identities=14% Similarity=-0.004 Sum_probs=138.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC---------eEEEcCCCccchHHHHHHhcccCCcEEE
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD---------HIISGDDVYGGTYRYFAQVAPKIGLEVD 126 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd---------~vl~~~~~y~~~~~~~~~~~~~~g~~v~ 126 (393)
.+|...+|++++++++|.+.+++++||++|. .++..++++|| .++.+...|. .........|..++
T Consensus 72 ~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~G~~~~ 147 (467)
T d2v1pa1 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD----TTQGHSQINGCTVR 147 (467)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCH----HHHHHHHHTTCEEE
T ss_pred CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccc----ccHHHHHHcCCeee
Confidence 3688999999999999999999999999986 66666655443 3444443333 23444566788888
Q ss_pred eeCCC---------------CHHHHHhhcC----CCCcEEEEecCCCCccccc-C---HHHHHHHHHhCCCcEEEEeCcc
Q psy12791 127 FVDLR---------------KIENLIKYIK----PNTKMVWIENPTNPLMTVF-D---VKAISAVVKQHPDILLVLDNTF 183 (393)
Q Consensus 127 ~~~~~---------------d~~~l~~~l~----~~~~~v~l~~p~nptG~~~-~---~~~l~~l~~~~~~~~livDea~ 183 (393)
.++.+ |++++++.+. +.++++++++.+|..|... | +++|.++|++| |+++++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~-g~~l~~D~a~ 226 (467)
T d2v1pa1 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSAR 226 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTT
T ss_pred ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHc-CCEEEEechh
Confidence 76542 6788888775 2467888888888765443 4 78899999999 9999999998
Q ss_pred Ccccc-----------cCC-------CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH---hc-----C
Q psy12791 184 LTAYY-----------QKS-------LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN---SM-----G 237 (393)
Q Consensus 184 ~~~~~-----------~~~-------~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~---~~-----~ 237 (393)
..+.. ... +....|++..|.+|.++ .++ +|+++++++.+....+.... .. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~--gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (467)
T d2v1pa1 227 FAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPM--GGLLCMKDDSFFDVYTECRTLCVVQEGFPTY 303 (467)
T ss_dssp HHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSS--CEEEEECSGGGHHHHHHHHHHHHHTTSSCCC
T ss_pred hhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC-CCC--ceeEEecchhhhhHHHhhcccccccccCcch
Confidence 64210 000 01236899999999884 443 78888876655554432221 11 1
Q ss_pred CCCCHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHhhCC
Q psy12791 238 VVPSPFDCWLVT--RGLKTLPCRLKEHERGSIEVAKFLESHP 277 (393)
Q Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 277 (393)
............ ..........++..++.+++.+.|.+..
T Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (467)
T d2v1pa1 304 GGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG 345 (467)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 122222222111 1112223455666778888888888754
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=3.2e-14 Score=130.41 Aligned_cols=283 Identities=11% Similarity=0.041 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHHH-HH--HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGLG-AV--TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~~-al--~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
..++.|+.|+++++++ +.+++++|+. +. .++..+..+++.+++....+... .+...++..|..++.....
T Consensus 47 l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 124 (360)
T d1bjna_ 47 VAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAA--SAIKEAKKYCTPNVFDAKVTVD 124 (360)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTSEEEEEECEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhh--hhHHHHhhcCccceeeccccCC
Confidence 4678999999999986 3667666654 43 44445667778877776555432 4556678888777666542
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCC-CcCcEEEEccccccc
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLP-WGVDIVLYSLTKYMN 208 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~-~~~di~~~S~sK~~~ 208 (393)
+.+++...+..+++++++.+.+|.||...+.+++. ++.+ ++++++|.+++.+.. +++ .+.|+++.|.+|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~-~~~v~vDa~~~~~~~--~vd~~~~dv~~~ss~k~~~ 199 (360)
T d1bjna_ 125 GLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGA-DVVVAADFSSTILSR--PIDVSRYGVIYAGAQKNIG 199 (360)
T ss_dssp TEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--CCCT-TCCEEEECTTTTTSS--CCCGGGCSEEEEETTTTTS
T ss_pred CcchhhhhhhhccCCceeEEEecccccccCcccccee--cccc-cceeeeeeeccccce--eeeeccceeEEEEcccccc
Confidence 44556666777889999999999999999877653 3556 889999998885543 343 468999999999996
Q ss_pred CCCCceEEEEEecChHHHHHH---------HHHHHh--cCCCCCHHHHHHH------HhccCCHHHHHHHHHHHHHHHHH
Q psy12791 209 GHSDVVMGATVTNDDSLQARL---------KFLQNS--MGVVPSPFDCWLV------TRGLKTLPCRLKEHERGSIEVAK 271 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~ 271 (393)
+++| +|+++.. +...+.. ...... ............+ ...........++.......+..
T Consensus 200 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (360)
T d1bjna_ 200 PAGL--TIVIVRE-DLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYG 276 (360)
T ss_dssp STTC--EEEEEEG-GGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCC--ceeEeee-hhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555 5555544 2211111 001111 1111111111111 11111222233344444444455
Q ss_pred HHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCC
Q psy12791 272 FLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351 (393)
Q Consensus 272 ~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~ 351 (393)
.+...........+. ....+++.|.++ +....+.+++.++..++....|.-
T Consensus 277 ~~~~~~~~~~~~~~~--------------~rs~~v~~f~~~-~~~~~~~~~~~l~~~Gi~~~~G~~-------------- 327 (360)
T d1bjna_ 277 VIDNSDFYRNDVAKR--------------NRSRMNVPFQLA-DSALDKLFLEESFAAGLHALKGHR-------------- 327 (360)
T ss_dssp HHHHCSSEECCBCGG--------------GBCSSEEEEEES-SGGGHHHHHHHHHHTTEECCBCCT--------------
T ss_pred hhhccccccccCCcc--------------cccceEEEEEcC-CcccHHHHHHHHHHCCCEeecCCC--------------
Confidence 554433321111011 112367889995 334445566666655665544311
Q ss_pred CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 352 ~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
.-+.+|+|++..+++++|+.|.++|+++.+
T Consensus 328 -----------~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 328 -----------VVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp -----------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -----------ccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 013489999999999999999999998753
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.4e-13 Score=126.30 Aligned_cols=285 Identities=14% Similarity=0.088 Sum_probs=176.6
Q ss_pred CchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh---------cC-CCCeEEEcCCCccchHHH---------HHHh
Q psy12791 58 NPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL---------LS-AGDHIISGDDVYGGTYRY---------FAQV 117 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~---------~~-~gd~vl~~~~~y~~~~~~---------~~~~ 117 (393)
++...++.+.++++.+.+...+.+||++|. .++... .. ...+++.....|++.... +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~ 161 (404)
T d2byla1 82 NNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 161 (404)
T ss_dssp ESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred cchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccC
Confidence 455677888899988888888999999986 444221 11 224566666666542211 1111
Q ss_pred cccCCcEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-ccc--
Q psy12791 118 APKIGLEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YYQ-- 189 (393)
Q Consensus 118 ~~~~g~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~~-- 189 (393)
.......+..+|.+|++++++.+.+ +..+|+++......|...+ +++|.++|+++ |+++|+||++..+ -..
T Consensus 162 ~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 162 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp SCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc-CeEEEeecccccccccccc
Confidence 1122234667788899999999865 4778888887878887776 99999999999 9999999999863 111
Q ss_pred ---CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHH
Q psy12791 190 ---KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHER 264 (393)
Q Consensus 190 ---~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 264 (393)
......+|++ +++|.++ -.++.+|.++++ +++.+.+...........+|..++.+.+.++.+.+ ..++..+
T Consensus 241 ~a~~~~gv~PDi~--~~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~ 316 (404)
T d2byla1 241 LAVDYENVRPDIV--LLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADK 316 (404)
T ss_dssp SGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhhhcCCCCCEE--EECchhh-CCCccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 1122346888 5779995 223568999987 77776554322222223467777777666655432 2333444
Q ss_pred HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-CHHHHHHHHHhcCccccccccCCccccccC
Q psy12791 265 GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-GAEETRIFLESLLIFRCAESLGGIESLADL 343 (393)
Q Consensus 265 ~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~ 343 (393)
....+.+.|+++.. + .+.+.++.|.+..|.+.. .......+..++...++-...
T Consensus 317 ~g~~l~~~l~~l~~------~----------~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~--------- 371 (404)
T d2byla1 317 LGIILRNELMKLPS------D----------VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP--------- 371 (404)
T ss_dssp HHHHHHHHHHTSCT------T----------TEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEE---------
T ss_pred hhHHHHHHHHhhcc------c----------cceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEec---------
Confidence 44556666654321 0 012234556788888853 122344455544333322111
Q ss_pred cccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 344 PAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
...+.||+++.+..++++++.+.+++++.
T Consensus 372 ------------------~~~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 372 ------------------THGDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp ------------------EETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ------------------CCCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 01468999988888888888777777654
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.51 E-value=1.3e-13 Score=126.61 Aligned_cols=284 Identities=11% Similarity=-0.020 Sum_probs=169.1
Q ss_pred chHHHHHHHHHHHhCCCc--EEEeccHHH-H-H-HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC--
Q psy12791 59 PTRRNLERCIASLEEAKH--GLCYSSGLG-A-V-TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR-- 131 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~--~i~~~~G~~-a-l-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~-- 131 (393)
..+++.|+.|+++++.++ .+++++|+. + + .++..+..+++++++...... ...+..+++..|.++..+..+
T Consensus 48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~~ 125 (361)
T d2c0ra1 48 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSW--ASKALKEAKLIGDTHVAASSEAS 125 (361)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHH--HHHHHHHHHHHSCEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechh--hhhhhhhhhhcCceeeeeccccc
Confidence 456789999999999963 566655544 4 4 445567788888876554332 235667788889988887664
Q ss_pred ---CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEccccccc
Q psy12791 132 ---KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMN 208 (393)
Q Consensus 132 ---d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~ 208 (393)
+++++++.+..+ +.+ +.+|.||...|..++.++|+++ |+++++|.+++.+...... ...|+.+.|.+|.++
T Consensus 126 ~~~~~~~~~~~~~~~-~~~---~v~~~tg~~~~~~~i~~~~~~~-~al~~vDavss~g~~~id~-~~~di~~~s~~k~~~ 199 (361)
T d2c0ra1 126 NYMTLPKLQEIQLQD-NAA---YLHLTSNETIEGAQFKAFPDTG-SVPLIGDMSSDILSRPFDL-NQFGLVYAGAQKNLG 199 (361)
T ss_dssp TTCSCCCGGGCCCCT-TEE---EEEEESEETTTTEECSSCCCCT-TSCEEEECTTTTTSSCCCG-GGCSEEEEETTTTTC
T ss_pred cccchhhhhhhcccC-cce---EEEEecccceecceEEEeeccC-CceEEEEeecccccccccc-ccceeEEEecccccc
Confidence 556666665543 333 3457889999999999999999 9999999999976643222 246788889999995
Q ss_pred CCCCceEEEEEecChHHHHHH---------HHHHHh--cCCCCCHHHHHH-----H-HhccCCHHHHHHHHHHHHHHHHH
Q psy12791 209 GHSDVVMGATVTNDDSLQARL---------KFLQNS--MGVVPSPFDCWL-----V-TRGLKTLPCRLKEHERGSIEVAK 271 (393)
Q Consensus 209 G~~G~r~G~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~l~~ 271 (393)
++|. +|+++.. +.+.+.- ...... ......+..... . .........+..+.......+..
T Consensus 200 -~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (361)
T d2c0ra1 200 -PSGV-TVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYD 276 (361)
T ss_dssp -CSSC-EEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred -cccC-cEEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhh
Confidence 6652 4444433 2221110 011111 111111111111 1 11112233334444444445555
Q ss_pred HHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCC
Q psy12791 272 FLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKS 351 (393)
Q Consensus 272 ~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~ 351 (393)
+........... .. + ..+ ....+.|.++ +....+.+.+.|+..++....|.- .
T Consensus 277 ~~~~~~~~~~~~-~~----~-------~~r-S~~~~~~~~~-~~~~~~~~~~~L~~~GI~~~~G~~-------------~ 329 (361)
T d2c0ra1 277 AIDQSGGFYRGC-VD----V-------DSR-SDMNITFRLA-SEELEKEFVKASEQEGFVGLKGHR-------------S 329 (361)
T ss_dssp HHHTSTTSSEES-SC----G-------GGB-CSSEEEEECS-CHHHHHHHHHHHHHTTEESCBCCT-------------T
T ss_pred hhhhcccccccC-CC----h-------hhc-cceEEEEECC-CcccHHHHHHHHHHCCCEEecCCC-------------c
Confidence 554433222111 11 0 001 1356788874 455566777777766666544411 0
Q ss_pred CChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 352 IPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 352 ~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
-+.+|+|+..+++.|+++.|.++|++..+
T Consensus 330 ------------~g~~RIs~~~~~~~edv~~Lv~~l~~~~~ 358 (361)
T d2c0ra1 330 ------------VGGLRASIYNAVPYESCEALVQFMEHFKR 358 (361)
T ss_dssp ------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ------------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 12499999999999999999999998754
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.51 E-value=6.8e-13 Score=123.40 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHh------c----CCCCeEEEcCCCccchHHHHHHhcccCC-----
Q psy12791 59 PTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHL------L----SAGDHIISGDDVYGGTYRYFAQVAPKIG----- 122 (393)
Q Consensus 59 ~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~------~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g----- 122 (393)
.....+.+.++++.+.+...+..+|+.+. .++... . .....++.....|++.............
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCC
Confidence 34566777788888888888999999885 433211 0 1223567776666653211111110001
Q ss_pred ----cEEEeeCCCCHHHHHhhcCC-CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-c----
Q psy12791 123 ----LEVDFVDLRKIENLIKYIKP-NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-Y---- 188 (393)
Q Consensus 123 ----~~v~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~---- 188 (393)
..+..+|.++.+.+...+.+ ++.+|+++..+...|.+.+ +++|.++|+++ |+++|+||++..+. .
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~-g~llI~DEV~tGfgRtG~~~ 239 (404)
T d1z7da1 161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKLL 239 (404)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS
T ss_pred CCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCCcccccc
Confidence 13445566688888887765 4788888888888888887 89999999999 99999999997531 1
Q ss_pred -cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHH-
Q psy12791 189 -QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHER- 264 (393)
Q Consensus 189 -~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 264 (393)
.......+|++ +++|.++ -.++.+|.++++ +++.+.++..........+|..+..+...++.+.. ..+...+
T Consensus 240 ~~e~~gv~PDiv--t~gK~l~-gG~~p~~~v~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~ 315 (404)
T d1z7da1 240 CVHHYNVKPDVI--LLGKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKL 315 (404)
T ss_dssp GGGGGTCCCSEE--EECGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccccCCCCCEE--EEccccc-CCCCCcccccch-HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccc
Confidence 11223457888 5779995 233568999987 77776554322212223467777766655543221 1222222
Q ss_pred ---HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccc
Q psy12791 265 ---GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLA 341 (393)
Q Consensus 265 ---~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~ 341 (393)
..+.+.+.++.++.+..+ ++.|.++.|.+..+......+...+...++-+..
T Consensus 316 ~~~~~~~l~~~~~~~~~v~~v------------------rg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~------- 370 (404)
T d1z7da1 316 GGPFLENLKRELKDSKIVRDV------------------RGKGLLCAIEFKNELVNVLDICLKLKENGLITRD------- 370 (404)
T ss_dssp HHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEECTTTCCHHHHHHHHHHTTEECCE-------
T ss_pred hhHHHHHHHHHHhcCCCeEEE------------------EeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEec-------
Confidence 223344445555554433 3456788898854333334444444332322111
Q ss_pred cCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 342 DLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
..++.|||++.+..++++++.+.++|++..
T Consensus 371 --------------------~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 371 --------------------VHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp --------------------ETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 114678999887777877777777776543
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=5.6e-13 Score=123.10 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=173.5
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHH---------hcccCC
Q psy12791 57 NNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQ---------VAPKIG 122 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~---------~~~~~g 122 (393)
+.+...++.+.+.+..... ...+.+||++|+ .++.. .....++|+.....|++....... .....-
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~ 156 (387)
T d1vefa1 77 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV 156 (387)
T ss_dssp CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS
T ss_pred CCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCC
Confidence 3455556666666655444 366678999987 55432 234456788888888663211111 111112
Q ss_pred cEEEeeCCCCHHHHHhhcCCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCcc-cccCC-----C
Q psy12791 123 LEVDFVDLRKIENLIKYIKPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTA-YYQKS-----L 192 (393)
Q Consensus 123 ~~v~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~-~~~~~-----~ 192 (393)
..+..+|.+|++.+++.++++..+|+++..+...|...+ +++|.++|+++ |+++|+||++..+ -.... .
T Consensus 157 ~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~~~~~~ 235 (387)
T d1vefa1 157 EPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHF 235 (387)
T ss_dssp SCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred CCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CceEEecccccccCccCCCcccccC
Confidence 356778888999999999988999999887777788776 99999999999 9999999999864 21111 1
Q ss_pred CCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHH
Q psy12791 193 PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVA 270 (393)
Q Consensus 193 ~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 270 (393)
...+|+++ ++|.++ .|+.++.++.. ++..+.+............|..+..+...++.+.+ ..++..+....+.
T Consensus 236 ~v~PDi~~--~gK~l~--gG~~~~~~~~~-~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~ 310 (387)
T d1vefa1 236 GIVPDILT--LAKALG--GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM 310 (387)
T ss_dssp TCCCSEEE--ECGGGG--TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CcCCceee--ecccCC--CCccccccccc-eeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHH
Confidence 23568886 569985 35567877776 56555442221111223467777777666655432 2334444555666
Q ss_pred HHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCC
Q psy12791 271 KFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHK 350 (393)
Q Consensus 271 ~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~ 350 (393)
+.|+.+.. +. +.+.++.|.+..|.+..+ ....+...+...++-.. +
T Consensus 311 ~~L~~l~~------~~----------v~~vrg~Gl~~~ie~~~~--~~~~~~~~~~~~g~l~~----------~------ 356 (387)
T d1vefa1 311 EKLRAIPS------PK----------IREVRGMGLMVGLELKEK--AAPYIARLEKEHRVLAL----------Q------ 356 (387)
T ss_dssp HHHHTSCC------TT----------EEEEEEETTEEEEEESSC--SHHHHHHHHHHHCEECE----------E------
T ss_pred HHHHhcCC------Cc----------eEEEeecceEEEEEEeCC--chHHHHHHHHHCCCeEE----------e------
Confidence 66664321 10 112345567888998532 11222222111111100 0
Q ss_pred CCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 351 SIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 351 ~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
..++.||+++.+-.++++++.+.++++++
T Consensus 357 -----------~g~~~ir~~Ppl~it~~~ld~~~~~i~~a 385 (387)
T d1vefa1 357 -----------AGPTVIRFLPPLVIEKEDLERVVEAVRAV 385 (387)
T ss_dssp -----------SSTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -----------cCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 01468999998888999999888888764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.47 E-value=1.6e-13 Score=130.60 Aligned_cols=212 Identities=16% Similarity=-0.005 Sum_probs=128.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEeccHHHHH-HHHHHhcCCCC-------eEEEcCCCccchHHHHHHhcccCCcEEEee
Q psy12791 57 NNPTRRNLERCIASLEEAKHGLCYSSGLGAV-TAVTHLLSAGD-------HIISGDDVYGGTYRYFAQVAPKIGLEVDFV 128 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~~~i~~~~G~~al-~~~~~~~~~gd-------~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~ 128 (393)
+++...+|++++++++|.+..++++||++|. .++..++++|+ .++.... |+.+ +.......|...+.+
T Consensus 73 ~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~-h~~t---~~~~~~~~g~~~~~~ 148 (465)
T d1ax4a_ 73 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNF-HFDT---TAAHVELNGCKAINI 148 (465)
T ss_dssp SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS-CCHH---HHHHHHHTTCEEEEC
T ss_pred cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc-hhhh---hHHHHHHcCCeeecc
Confidence 4688899999999999999999999999996 66655544332 3445444 3332 233345567777654
Q ss_pred CC---------------CCHHHHHhhcCC----CCcEEEEecCCCCcccc-cC---HHHHHHHHHhCCCcEEEEeCccCc
Q psy12791 129 DL---------------RKIENLIKYIKP----NTKMVWIENPTNPLMTV-FD---VKAISAVVKQHPDILLVLDNTFLT 185 (393)
Q Consensus 129 ~~---------------~d~~~l~~~l~~----~~~~v~l~~p~nptG~~-~~---~~~l~~l~~~~~~~~livDea~~~ 185 (393)
.. .|++++++++.+ .+.+++++.++|..|.. ++ +++|.++|++| |+++++|+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~-g~~l~~D~~~~~ 227 (465)
T d1ax4a_ 149 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFC 227 (465)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHH
T ss_pred cccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHc-CCEEEEECcchh
Confidence 32 178888888753 34566667777766544 33 77889999999 999999999874
Q ss_pred cccc-------CCC-----------CCcCcEEEEcccccccCCCCceEEEEEecChH-HHHHHHHHHH-hc--CC--CCC
Q psy12791 186 AYYQ-------KSL-----------PWGVDIVLYSLTKYMNGHSDVVMGATVTNDDS-LQARLKFLQN-SM--GV--VPS 241 (393)
Q Consensus 186 ~~~~-------~~~-----------~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~-~~~~~~~~~~-~~--~~--~~~ 241 (393)
+... ... ....|++..|.+|.+ +.++ +|+++.++.. +.+....... .. .. ...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~-~~~~--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
T d1ax4a_ 228 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP-LLNI--GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA 304 (465)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT-CCSS--CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCC
T ss_pred hhhcccccccccccccchhhhccccccccceeEeecccCc-cccc--ceeEeecchHHHHHhhhccccccccCCCcchhh
Confidence 2110 000 012578888888887 3554 8898887443 3333322211 11 11 112
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHhhC
Q psy12791 242 PFDCWLVTRGL--KTLPCRLKEHERGSIEVAKFLESH 276 (393)
Q Consensus 242 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~ 276 (393)
......+...+ .......++..++..++.+.|+..
T Consensus 305 ~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~ 341 (465)
T d1ax4a_ 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA 341 (465)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 22111111111 111234455566677888888764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.46 E-value=1e-11 Score=114.22 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=157.3
Q ss_pred HHHHHHhCCC-----cEEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHHHHHh--c--cc-----CCcEEEeeCC
Q psy12791 66 RCIASLEEAK-----HGLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRYFAQV--A--PK-----IGLEVDFVDL 130 (393)
Q Consensus 66 ~~la~~~~~~-----~~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~--~--~~-----~g~~v~~~~~ 130 (393)
+.+.++++.+ -.+-.-||+.|. .+..++++|||+|+..+...++. +... . .. ...+...+++
T Consensus 84 ~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGH---lshg~~~~~~~~~~~~~~~~~~~y~v 160 (470)
T d1rv3a_ 84 KRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGH---LTHGFMTDKKKISATSIFFESMAYKV 160 (470)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCC---GGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCc---ccccccccCCCcccccceeEeeEEEE
Confidence 3446678875 256678999996 88889999999999988766542 1111 0 01 1135666654
Q ss_pred C------CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcE
Q psy12791 131 R------KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDI 198 (393)
Q Consensus 131 ~------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di 198 (393)
+ |.+++++.... ++++|++..-.+| ..+|.+++.++|++. |++|++|.++..+ .++.|+.+ +|+
T Consensus 161 ~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sPl~~-aDv 236 (470)
T d1rv3a_ 161 NPDTGYIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPFEH-CHV 236 (470)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGGGT-CSE
T ss_pred ecccCcccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhcc-CCeEEecchhhhhhccccccCChhhe-eee
Confidence 3 77888877653 6999999776666 577999999999999 9999999999874 35677765 699
Q ss_pred EEEcccccccCCCCceEEEEEecCh--------------HHHHHHHHHHHh--cCCCCCHHHHHHH---Hhcc-CCHHHH
Q psy12791 199 VLYSLTKYMNGHSDVVMGATVTNDD--------------SLQARLKFLQNS--MGVVPSPFDCWLV---TRGL-KTLPCR 258 (393)
Q Consensus 199 ~~~S~sK~~~G~~G~r~G~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~-~~~~~~ 258 (393)
++.|.||.+.|| |+|.+.++++ ++.+++....-+ .|+......+..+ .... ......
T Consensus 237 vt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Y 313 (470)
T d1rv3a_ 237 VTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEY 313 (470)
T ss_dssp EEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred eeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHH
Confidence 999999999766 6899998743 477777654422 1222211112211 1112 245567
Q ss_pred HHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEc--C-CHHHHHHHHHhcCc
Q psy12791 259 LKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVN--G-GAEETRIFLESLLI 327 (393)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~ 327 (393)
.++..+|++.|++.|.+... . +. .+. .-..++.+.+. + +..++++.+++..+
T Consensus 314 a~qvv~NAk~La~~L~~~G~-~-v~-~gg--------------TdnHlvlvdl~~~g~~g~~ae~~Le~~gI 368 (470)
T d1rv3a_ 314 QRQVVANCRALSAALVELGY-K-IV-TGG--------------SDNHLILVDLRSKGTDGGRAEKVLEACSI 368 (470)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-E-EG-GGS--------------CSSSEEEEEGGGGTCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHhCCc-e-ec-cCC--------------CCCceEEEeecccCCcHHHHHHHHHHcCc
Confidence 77788999999999987532 1 21 110 11356666664 2 56788888887765
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.45 E-value=2.8e-12 Score=117.70 Aligned_cols=240 Identities=14% Similarity=0.121 Sum_probs=149.3
Q ss_pred HHHHHHHHhCCCc-----EEEeccHHHHH-HHHHHhcCCCCeEEEcCCCccchHHH-H-HH--hcccCC--cEEEeeCCC
Q psy12791 64 LERCIASLEEAKH-----GLCYSSGLGAV-TAVTHLLSAGDHIISGDDVYGGTYRY-F-AQ--VAPKIG--LEVDFVDLR 131 (393)
Q Consensus 64 lr~~la~~~~~~~-----~i~~~~G~~al-~~~~~~~~~gd~vl~~~~~y~~~~~~-~-~~--~~~~~g--~~v~~~~~~ 131 (393)
+.+...++++++. .+-.-||+.|. .+..++++|||+|+..++..++...- + .. .....| .+...+..+
T Consensus 78 a~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d 157 (463)
T d2a7va1 78 CQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN 157 (463)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBC
T ss_pred HHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeecc
Confidence 3555677899884 57889999996 88889999999999888776553200 0 00 011112 133333322
Q ss_pred ------CHHHHHhhcCC-CCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-----cccCCCCCcCcEE
Q psy12791 132 ------KIENLIKYIKP-NTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-----YYQKSLPWGVDIV 199 (393)
Q Consensus 132 ------d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-----~~~~~~~~~~di~ 199 (393)
|.+++++.... ++++|++..-.+| ..+|.+++.++|++. |++|++|.++..+ .+++|+.. +|++
T Consensus 158 ~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sP~~~-aDvv 233 (463)
T d2a7va1 158 PKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFKH-ADIV 233 (463)
T ss_dssp TTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGGT-CSEE
T ss_pred CCCCcCcHHHHHHHHhhcCCceEEecccccc--cccCHHHHHHHhhcc-cceEEechhhhhHHhhhhhhcChhhh-hhhh
Confidence 78888877653 6899999776666 477999999999999 9999999999874 34567755 6999
Q ss_pred EEcccccccCCCCceEEEEEecCh--------------HHHHHHHHHHHh--cCCCCCHHHHHHHH---hcc-CCHHHHH
Q psy12791 200 LYSLTKYMNGHSDVVMGATVTNDD--------------SLQARLKFLQNS--MGVVPSPFDCWLVT---RGL-KTLPCRL 259 (393)
Q Consensus 200 ~~S~sK~~~G~~G~r~G~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~-~~~~~~~ 259 (393)
+.|.||.+.|| |+|.+.++++ ++.+++.....+ .|+......+..+. ... .......
T Consensus 234 t~tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya 310 (463)
T d2a7va1 234 TTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS 310 (463)
T ss_dssp EEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred hchhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHH
Confidence 99999999766 7899998742 567777654332 22222121222111 112 2355677
Q ss_pred HHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC---CHHHHHHHHHhcCc
Q psy12791 260 KEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG---GAEETRIFLESLLI 327 (393)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 327 (393)
++..+|++.|++.|.+... . +. .+.. -..++.+.+.+ +-..++..++...+
T Consensus 311 ~qVv~NAk~La~~L~~~G~-~-vv-~ggT--------------dnHlvlvdl~~~~~~G~~ae~~Le~~gI 364 (463)
T d2a7va1 311 LQVLKNARAMADALLERGY-S-LV-SGGT--------------DNHLVLVDLRPKGLDGARAERVLELVSI 364 (463)
T ss_dssp HHHHHHHHHHHHHHHHTTC-E-EG-GGSC--------------SSSEEEEECTTTTCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHhCCC-e-ee-cCCC--------------CCceeeeeccccCCCHHHHHHHHHhccC
Confidence 7888999999999986532 1 21 1111 13566777642 45677777777664
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.40 E-value=1.3e-13 Score=126.64 Aligned_cols=282 Identities=11% Similarity=0.006 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHhCCC--cEEEeccHHHHH---HHHHHhcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC---
Q psy12791 60 TRRNLERCIASLEEAK--HGLCYSSGLGAV---TAVTHLLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR--- 131 (393)
Q Consensus 60 ~~~~lr~~la~~~~~~--~~i~~~~G~~al---~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~--- 131 (393)
..++.|+.|+++++++ ..|++++|++++ .+...+..+++.+++....+.+. .+...++..+..++.....
T Consensus 49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
T d1w23a_ 49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSE--KALKEAKLLGETHIAASTKANS 126 (360)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHH--HHHHHHHTTSEEEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhh--hhHHHHHHhhhcceeecccccc
Confidence 5678999999999987 378888887763 33445567788887766544432 3455566777766665443
Q ss_pred --CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcccccCCCCCcCcEEEEcccccccC
Q psy12791 132 --KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAYYQKSLPWGVDIVLYSLTKYMNG 209 (393)
Q Consensus 132 --d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~~~~~~~~~~di~~~S~sK~~~G 209 (393)
+++++...... ... .+..|.||.+.|+++|.++|+++ |+++++|.+++.+.....++ ..|+.+.+++|..++
T Consensus 127 ~~~~~~~~~~~~~-~~~---~~~~~~tg~~~~~~~i~~~~~~~-g~l~ivDavqs~g~~~id~~-~~~vd~~~~~~~k~~ 200 (360)
T d1w23a_ 127 YQSIPDFSEFQLN-END---AYLHITSNNTIYGTQYQNFPEIN-HAPLIADMSSDILSRPLKVN-QFGMIYAGAQKNLGP 200 (360)
T ss_dssp SCSCCCGGGCCCC-TTE---EEEEEESEETTTTEECSSCCCCC-SSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTSC
T ss_pred ccchhhhhhcccc-ccc---ceeEecCCccccceeeeeccccc-eeeEEeeccccccccccccc-cccceEEeecccccc
Confidence 23333333322 233 34556789999999999999999 99999999999776533332 234555566666643
Q ss_pred CCCceEEEEEecChHHHHHHH---------HHHH--hcCCCCCHHHHHHHH------hccCCHHHHHHHHHHHHHHHHHH
Q psy12791 210 HSDVVMGATVTNDDSLQARLK---------FLQN--SMGVVPSPFDCWLVT------RGLKTLPCRLKEHERGSIEVAKF 272 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~ 272 (393)
++| .|+++.+ +...+... .... ............... ..........++..........+
T Consensus 201 ~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1w23a_ 201 SGV--TVVIVKK-DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDT 277 (360)
T ss_dssp TTC--EEEEEEH-HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCc--ceeeEec-hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344 5555543 32221110 0111 111222211111110 11111121222222333333344
Q ss_pred HhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCC
Q psy12791 273 LESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSI 352 (393)
Q Consensus 273 l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~ 352 (393)
.......... ... + . ....+.+.|.++ +....+.+...+...++...-|..+
T Consensus 278 ~~~~~~~~~~-~~~----~-------~-~rS~~vvsf~i~-~~~~~~~~~~~l~~~GI~~~~G~~~-------------- 329 (360)
T d1w23a_ 278 IDESNGFYVG-HAE----K-------G-SRSLMNVTFNLR-NEELNQQFLAKAKEQGFVGLNGHRS-------------- 329 (360)
T ss_dssp HHTTTTSSEE-SSC----G-------G-GBCSSEEEEECS-SHHHHHHHHHHHHHTTEESCBCCTT--------------
T ss_pred Hhhccccccc-CCC----h-------h-hcceeEEEEEcC-CCccHHHHHHHHHHCCCeeeeCCCc--------------
Confidence 4433322211 111 0 0 111357889884 5566777888777767665544210
Q ss_pred ChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhh
Q psy12791 353 PKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKAC 391 (393)
Q Consensus 353 ~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~ 391 (393)
-+.+|+|+...++.|++++|.+++++.-
T Consensus 330 -----------~ggiRiS~~~~~t~e~V~~Li~~~~~~~ 357 (360)
T d1w23a_ 330 -----------VGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp -----------TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred -----------cCcEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 1348999977779999999999998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.1e-11 Score=113.96 Aligned_cols=284 Identities=15% Similarity=0.097 Sum_probs=164.7
Q ss_pred CchHHHHHHHHHHHhCCC---cEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcccC----------
Q psy12791 58 NPTRRNLERCIASLEEAK---HGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPKI---------- 121 (393)
Q Consensus 58 ~~~~~~lr~~la~~~~~~---~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~---------- 121 (393)
++...++.+.|.++.... ...+.+||++|. .++. ......++|+.....|++............
T Consensus 82 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~ 161 (425)
T d1sffa_ 82 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM 161 (425)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred CcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccc
Confidence 456677888888887532 356678899886 4442 223345678888888877543322221100
Q ss_pred CcEEEeeCCC-------------CHHHHHhhc--CCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCc
Q psy12791 122 GLEVDFVDLR-------------KIENLIKYI--KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNT 182 (393)
Q Consensus 122 g~~v~~~~~~-------------d~~~l~~~l--~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea 182 (393)
.......+.. +.+++.... ..++.+|+++..+...|...+ ++.|.++|+++ |+++|+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV 240 (425)
T d1sffa_ 162 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH-GIMLIADEV 240 (425)
T ss_dssp CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH-TCEEEEECT
T ss_pred cCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHc-CceEEeccc
Confidence 0111112211 011111111 124678888888877787765 88999999999 999999999
Q ss_pred cCccc-c-----cCCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHH
Q psy12791 183 FLTAY-Y-----QKSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLP 256 (393)
Q Consensus 183 ~~~~~-~-----~~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
+..+. . .......+|+++ ++|.++| |+.+|.++++ +++.+.+........-...|..++.+.+.++.+.
T Consensus 241 ~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g--G~P~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~ 315 (425)
T d1sffa_ 241 QSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG--GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE 315 (425)
T ss_dssp TTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT--SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred cccCCCcchhhHHHhcCCCcccee--cccccCC--CcceEEEEEc-HHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 99631 1 122234578886 6799952 5679999998 7777655322222222345777777766665433
Q ss_pred H--HHHHHHHHHH----HHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-------CHHHHHHHHH
Q psy12791 257 C--RLKEHERGSI----EVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-------GAEETRIFLE 323 (393)
Q Consensus 257 ~--~~~~~~~~~~----~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 323 (393)
+ ..++..+... .+.+.++.++.+..+ ++.|.++.|.+.. +......+.+
T Consensus 316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v------------------rg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~ 377 (425)
T d1sffa_ 316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHNKPDAKLTAEIVA 377 (425)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE------------------EEETTEEEEEEBGGGCTTSBCHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEE------------------EccccEEEEEEeccCccCCccHHHHHHHHH
Confidence 2 1222222223 334444455544433 3456788888742 2344555665
Q ss_pred hcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 324 SLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 324 ~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+...++-+... |...+.||+++.+..++++++.+.+++++.
T Consensus 378 ~l~~~Gvl~~~~-------------------------g~~~n~i~~~PpL~it~~eid~~l~~l~~a 419 (425)
T d1sffa_ 378 RARDKGLILLSC-------------------------GPYYNVLRILVPLTIEDAQIRQGLEIISQC 419 (425)
T ss_dssp HHHHTTEECEEE-------------------------STTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEecc-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 554333322211 122578999998888888777766666543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=1.8e-11 Score=113.22 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHHHHHhcccCCcEEEeeCCCCHHHHH
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLRKIENLI 137 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~d~~~l~ 137 (393)
.++++.|+++.|.+ -..-...|+++. ..++. -....++++++.-.|+.+.......++..|++++.++.++.....
T Consensus 111 ~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~ 190 (437)
T d1wyua1 111 FEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPL 190 (437)
T ss_dssp HHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCC
T ss_pred HHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccchh
Confidence 57888999999988 356667888874 33322 234567899999999887777777788899999999987443333
Q ss_pred hhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCcc-cccCCCCCcCcEEEEccccccc-----CCC
Q psy12791 138 KYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTA-YYQKSLPWGVDIVLYSLTKYMN-----GHS 211 (393)
Q Consensus 138 ~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~-~~~~~~~~~~di~~~S~sK~~~-----G~~ 211 (393)
..+.+++.+|++++|| -.|.+-+++++.+++++. |.++++|...... ....|-++|+||++++ +|.|+ |.|
T Consensus 191 ~~~~~~~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~-G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP 267 (437)
T d1wyua1 191 PEVGEEVGAVVVQNPN-FLGALEDLGPFAEAAHGA-GALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGP 267 (437)
T ss_dssp CCCCTTEEEEEEESSC-TTSBCCCHHHHHHHHHHT-TCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCS
T ss_pred hhhccceeEEEEcccc-ccccccchHHHHHHhhhc-cceEEeeechhhhhccccccccccceEeec-cceeccccCCCcC
Confidence 4467789999999996 469999999999999999 9988887654432 2234556799999999 66443 344
Q ss_pred CceEEEEEecChHHHHHHHH-------------------------HHHh----cCCCCCHHH-----HHHHHhccCCHHH
Q psy12791 212 DVVMGATVTNDDSLQARLKF-------------------------LQNS----MGVVPSPFD-----CWLVTRGLKTLPC 257 (393)
Q Consensus 212 G~r~G~~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~~~~-----~~~~~~~~~~~~~ 257 (393)
| .|++.++ +++...+.. .+.. ..+..+.+. .++...+-+.+.+
T Consensus 268 ~--~G~~a~~-~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ 344 (437)
T d1wyua1 268 H--FGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLRE 344 (437)
T ss_dssp C--CEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--ccccccc-chhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHH
Confidence 4 7999987 555443311 0000 011222222 1222233334555
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCc
Q psy12791 258 RLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGI 337 (393)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 337 (393)
.-+....++.++.+.|.+++++. ...++ .+-.-+.+.+..+.+ .+.++|...++- .|..
T Consensus 345 ia~~a~~~A~yl~~~L~~~~g~~-~~~~~---------------~~f~ef~v~~~~~~~---~i~k~L~d~G~~--~~~~ 403 (437)
T d1wyua1 345 VALKSVEMAHKLHALLLEVPGVR-PFTPK---------------PFFNEFALALPKDPE---AVRRALAERGFH--GATP 403 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCE-ECSCS---------------SBCSEEEEECSSCHH---HHHHHHHHTTCC--CCEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCee-ccCCC---------------CeeeEEEEECCCCHH---HHHHHHHhCCCC--CCcc
Confidence 55666677888888888776654 22221 011124445432333 333333322221 1100
Q ss_pred cccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 338 ESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 338 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
. .+. ..++.+.++++..++.+++++|.++|+++
T Consensus 404 ---~-~~~----------------~~~~~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 404 ---V-PRE----------------YGENLALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp ---C-CTT----------------SCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ---c-ccC----------------CCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 0 000 12578899999999999999999999876
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.31 E-value=1.2e-10 Score=108.63 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=122.5
Q ss_pred CCchHHHHHHHHHHHhCCC-cEEEeccHHHHH-HHHHH--hcCCCCeEEEcCCCccchHHH---------HHHhc-ccC-
Q psy12791 57 NNPTRRNLERCIASLEEAK-HGLCYSSGLGAV-TAVTH--LLSAGDHIISGDDVYGGTYRY---------FAQVA-PKI- 121 (393)
Q Consensus 57 ~~~~~~~lr~~la~~~~~~-~~i~~~~G~~al-~~~~~--~~~~gd~vl~~~~~y~~~~~~---------~~~~~-~~~- 121 (393)
+......+.+.+++..... ...+.+||++|+ .++.. .....++|+.....|++.... ..... ...
T Consensus 90 ~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~ 169 (427)
T d2gsaa_ 90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG 169 (427)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSS
T ss_pred chhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCC
Confidence 3455667777777776544 466778999997 55432 233456788888888753110 00000 000
Q ss_pred -----CcEEEeeCCCCHHHHHhhcCC---CCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccccc
Q psy12791 122 -----GLEVDFVDLRKIENLIKYIKP---NTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAYYQ 189 (393)
Q Consensus 122 -----g~~v~~~~~~d~~~l~~~l~~---~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~~~ 189 (393)
..+....+..|++.+++.+.+ +..+|+++..+...|.+.| +++|.++|+++ |+++|+||++..+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~r~g 248 (427)
T d2gsaa_ 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVMTGFRIA 248 (427)
T ss_dssp SCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBTTTB
T ss_pred CcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh-ceeeeeccccccceec
Confidence 123455666799999988874 4678888887777788887 99999999999 9999999999864211
Q ss_pred C-----CCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-h--cCCCCCHHHHHHHHhccC
Q psy12791 190 K-----SLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-S--MGVVPSPFDCWLVTRGLK 253 (393)
Q Consensus 190 ~-----~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 253 (393)
. ......|+++ ++|.++ .|+.+|.++++ +++.+.+..... . .....+|..+..+.+.++
T Consensus 249 ~~~~~~~~gi~PDi~~--~gK~lg--gG~p~~a~~~~-~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le 315 (427)
T d2gsaa_ 249 YGGVQEKFGVTPDLTT--LGKIIG--GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315 (427)
T ss_dssp TTCHHHHTTCCCSEEE--ECGGGG--TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred ccchHHhcCCCHHHHh--hhhccC--CCcceeeeeeh-HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhH
Confidence 1 1223568886 568885 35668888887 777776543211 1 112346777666655543
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=6.4e-11 Score=110.53 Aligned_cols=283 Identities=14% Similarity=0.089 Sum_probs=162.5
Q ss_pred CCCchHHHHHHHHHHHhCCC--cEEEeccHHHHH-HHHHHh-----c--CCCCeEEEcCCCccchHHHHHHhccc-----
Q psy12791 56 SNNPTRRNLERCIASLEEAK--HGLCYSSGLGAV-TAVTHL-----L--SAGDHIISGDDVYGGTYRYFAQVAPK----- 120 (393)
Q Consensus 56 ~~~~~~~~lr~~la~~~~~~--~~i~~~~G~~al-~~~~~~-----~--~~gd~vl~~~~~y~~~~~~~~~~~~~----- 120 (393)
++.+...++.+++.+....+ ...+.+||++|+ .++... . ..+.+|+.....|++...........
T Consensus 83 ~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~ 162 (429)
T d1s0aa_ 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMH 162 (429)
T ss_dssp EECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTG
T ss_pred ccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccc
Confidence 34455667777887776544 466788888886 444221 1 23457888888877643211111110
Q ss_pred -----CCcEEEeeCC-----------CCHHHHHhhc---CCCCcEEEEecCC-CCccccc-C---HHHHHHHHHhCCCcE
Q psy12791 121 -----IGLEVDFVDL-----------RKIENLIKYI---KPNTKMVWIENPT-NPLMTVF-D---VKAISAVVKQHPDIL 176 (393)
Q Consensus 121 -----~g~~v~~~~~-----------~d~~~l~~~l---~~~~~~v~l~~p~-nptG~~~-~---~~~l~~l~~~~~~~~ 176 (393)
........+. .+++++++.+ .++..+|+++... +..|... | +++|.++|+++ |++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~-gil 241 (429)
T d1s0aa_ 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GIL 241 (429)
T ss_dssp GGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCE
T ss_pred cccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc-Ccc
Confidence 0011111111 1344444333 3567888887654 5555544 3 89999999999 999
Q ss_pred EEEeCccCcc-ccc-----CCCCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHH-----hcCCCCCHHHH
Q psy12791 177 LVLDNTFLTA-YYQ-----KSLPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQN-----SMGVVPSPFDC 245 (393)
Q Consensus 177 livDea~~~~-~~~-----~~~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 245 (393)
+|+||++..+ -.. .......|+++ ++|.++ -.+..+|.++++ +++.+.+..... ......++..+
T Consensus 242 lI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~gnp~~~ 317 (429)
T d1s0aa_ 242 LIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLAC 317 (429)
T ss_dssp EEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGG-TSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHH
T ss_pred eehhhccccccccccccccccceecccccc--cccccc-cccccccchhhH-HHHHhccCCCCCcceeecCCCCCCcccc
Confidence 9999999964 111 12234578886 569984 344669999997 888776643211 11222457777
Q ss_pred HHHHhccCCHHH--HHHHHHHHHHHHHHHHhhC---CCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHH
Q psy12791 246 WLVTRGLKTLPC--RLKEHERGSIEVAKFLESH---PCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRI 320 (393)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~---~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
+.+.+.++.+++ ..++..+....+.+.|+++ +.+. +.++.|.++.+.+. .+.....
T Consensus 318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~------------------~vrg~Gl~~~~e~~-~~~~~~~ 378 (429)
T d1s0aa_ 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVA------------------DVRVLGAIGVVETT-HPVNMAA 378 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEE------------------EEEEETTEEEEEES-SCBCHHH
T ss_pred hhhhccccccccccccchhhHHHHHHHHHHHHhccCCceE------------------EEeecccEEEEEec-CcccHHH
Confidence 766666654432 2333344444555555432 2221 23455778888885 2333344
Q ss_pred HHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 321 FLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 321 ~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
+...+...++-+.. ..+.||+++.+.-++++++.+.++|++.
T Consensus 379 ~~~~~~~~Gl~~~~----------------------------~g~~i~~~Ppl~it~~eid~~~~~l~~a 420 (429)
T d1s0aa_ 379 LQKFFVEQGVWIRP----------------------------FGKLIYLMPPYIILPQQLQRLTAAVNRA 420 (429)
T ss_dssp HHHHHHHTTEECCC----------------------------BTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcEEEe----------------------------cCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 44443322222111 1467899988888888888888888755
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.27 E-value=2.1e-10 Score=107.28 Aligned_cols=289 Identities=16% Similarity=0.116 Sum_probs=160.7
Q ss_pred CCCCchHHHHHHHHHHHhC--CCcEEEeccHHHHH-HHHH--HhcCCCCeEEEcCCCccchHHHHHHhcccC-----C--
Q psy12791 55 RSNNPTRRNLERCIASLEE--AKHGLCYSSGLGAV-TAVT--HLLSAGDHIISGDDVYGGTYRYFAQVAPKI-----G-- 122 (393)
Q Consensus 55 ~~~~~~~~~lr~~la~~~~--~~~~i~~~~G~~al-~~~~--~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-----g-- 122 (393)
.+.++...++.++|++... .+...+.+||++|+ .++. ......++|+.....|++............ +
T Consensus 79 ~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 158 (431)
T d1zoda1 79 EMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA 158 (431)
T ss_dssp TCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCC
T ss_pred ccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCc
Confidence 3455667788888888763 34677889999997 5543 223445678887888776432222111100 0
Q ss_pred -cEEEeeCCC-----------------CHHHHHhhc----CCCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcE
Q psy12791 123 -LEVDFVDLR-----------------KIENLIKYI----KPNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDIL 176 (393)
Q Consensus 123 -~~v~~~~~~-----------------d~~~l~~~l----~~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~ 176 (393)
.....++.. +++.+...+ .++..+|+++..+...|.+.+ +++|.++|+++ |++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~-gil 237 (431)
T d1zoda1 159 AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GML 237 (431)
T ss_dssp CTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCE
T ss_pred ccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc-Cce
Confidence 111222111 122222222 345788888887776777765 99999999999 999
Q ss_pred EEEeCccCcc-cccCC-----CCCcCcEEEEcccccccCCCCceEEEEEecChHHHHHHHHHHHh--cCCCCCHHHHHHH
Q psy12791 177 LVLDNTFLTA-YYQKS-----LPWGVDIVLYSLTKYMNGHSDVVMGATVTNDDSLQARLKFLQNS--MGVVPSPFDCWLV 248 (393)
Q Consensus 177 livDea~~~~-~~~~~-----~~~~~di~~~S~sK~~~G~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 248 (393)
+|.||++..+ -.... ....+|+++ ++|.++ .|+.++.+++. ++..+........ ......|..+..+
T Consensus 238 lI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~--gG~p~~av~~~-~~~~~~~~~~~~~~~~T~~g~pl~~aaa 312 (431)
T d1zoda1 238 LILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLG--AGLPLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVG 312 (431)
T ss_dssp EEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHH--TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred EEeccccccccccccccccccCCCCcchhc--cccccc--cccccceeeee-ecchhhhhcccccccCCCCCCcchHHHH
Confidence 9999999963 22111 123578886 669885 34457777776 6665554322211 1223466666655
Q ss_pred HhccCC-----HHHHHHHHHH-HHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC-------CH
Q psy12791 249 TRGLKT-----LPCRLKEHER-GSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG-------GA 315 (393)
Q Consensus 249 ~~~~~~-----~~~~~~~~~~-~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 315 (393)
.+.++. +..+..+..+ ..+.+.+.+..++.+..+ ++.|.++.|.+.. ..
T Consensus 313 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~v------------------rG~Glm~~ie~~~~~~~~~~~~ 374 (431)
T d1zoda1 313 LRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKEPAD 374 (431)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEE------------------eecceEEEEEEecCCcccCccH
Confidence 544432 2222222222 223344445555655443 3456777777631 11
Q ss_pred HHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 316 EETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.....+.+.+...++.... ... +...+.||+++.+..++++++.+.++|++.
T Consensus 375 ~~~~~i~~~~~~~Gl~~~~------~~~-----------------~~~~~~i~l~Ppl~it~~eid~~~~~l~~a 426 (431)
T d1zoda1 375 GLGAKITRECMNLGLSMNI------VQL-----------------PGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 426 (431)
T ss_dssp THHHHHHHHHHHTTEECCE------ECC-----------------TTSCCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCe------eee-----------------cCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2334444443332221100 000 012578999999888888887777777654
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=1e-09 Score=103.14 Aligned_cols=192 Identities=9% Similarity=0.018 Sum_probs=112.7
Q ss_pred CCCcEEEEecCCCCcccccC----HHHHHHHHHhCCCcEEEEeCccCccc-cc-----CC--CCCcCcEEEEcccccccC
Q psy12791 142 PNTKMVWIENPTNPLMTVFD----VKAISAVVKQHPDILLVLDNTFLTAY-YQ-----KS--LPWGVDIVLYSLTKYMNG 209 (393)
Q Consensus 142 ~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~~~~livDea~~~~~-~~-----~~--~~~~~di~~~S~sK~~~G 209 (393)
+++.+|+++..+...|...+ +++|.++|+++ |+++|+||++..+. .. .. +....|+++ ++|.++
T Consensus 247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~-gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~- 322 (461)
T d1ohwa_ 247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMM- 322 (461)
T ss_dssp CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGS-
T ss_pred CccceeeeccccccccccCchhhHHHHHHHHHHhh-CcceeccccccccccccccccccccccccCchhhh--hhhccc-
Confidence 45788999988888887765 89999999999 99999999998632 11 11 111367874 669884
Q ss_pred CCCceEEEEEecChHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHh----hCCC-cceE
Q psy12791 210 HSDVVMGATVTNDDSLQARLKFLQNSMGVVPSPFDCWLVTRGLKTLPC--RLKEHERGSIEVAKFLE----SHPC-VKGV 282 (393)
Q Consensus 210 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~----~~~~-~~~v 282 (393)
.|+.... ..+... ...........++..+..+.+.++.+.+ ..++..+..+.+.+.|+ .+|. +..
T Consensus 323 -----~g~~~~~-~~~~~~-~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~- 394 (461)
T d1ohwa_ 323 -----TGGFFHK-EEFRPN-APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISR- 394 (461)
T ss_dssp -----SEEEEEC-GGGSCS-STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEE-
T ss_pred -----ccccccc-cccccc-cccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-
Confidence 2344433 322211 0011111223456776666665544321 22333333333444443 2332 222
Q ss_pred eCCCCCCCcchHHHhhhcCCCcceEEEEEcCCHHHHHHHHHhcCccccccccCCccccccCcccccCCCCChhhHhhcCC
Q psy12791 283 LHPGLPSHPNHELAKSQWSGTSGMLSFYVNGGAEETRIFLESLLIFRCAESLGGIESLADLPAEMTHKSIPKETRDALGI 362 (393)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~ 362 (393)
.+|.|.++.|.+. +.+...++.+.+...++-+.. .
T Consensus 395 -----------------vrG~Gl~~~ie~~-~~~~~~~i~~~~~~~Gll~~~---------------------------~ 429 (461)
T d1ohwa_ 395 -----------------VRGRGTFCSFDTP-DESIRNKLISIARNKGVMLGG---------------------------C 429 (461)
T ss_dssp -----------------EEEETTEEEEECS-SHHHHHHHHHHHHHTTEECEE---------------------------E
T ss_pred -----------------eeeeeEEEEEEcC-CHHHHHHHHHHHHHCCeEEee---------------------------C
Confidence 2445778899984 677777777766554433211 0
Q ss_pred CCCeEEEEecCCChHHHHHHHHHHHHHh
Q psy12791 363 TDNLVRLSVGVEGYTDLIADLDQALRKA 390 (393)
Q Consensus 363 ~~~~iRls~~~~~~~~~i~~l~~al~~~ 390 (393)
.+..|||.+.+.-++++++.+.++|+++
T Consensus 430 ~~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 430 GDKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp TTTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 1467888887777788877777777654
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=8.8e-08 Score=89.19 Aligned_cols=281 Identities=17% Similarity=0.168 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhCCC-cEEEeccHHHHH-HHH-HH--hc-CCC----CeEEEcCCCccchHHHHHHhcccCCcEEEeeCCC
Q psy12791 62 RNLERCIASLEEAK-HGLCYSSGLGAV-TAV-TH--LL-SAG----DHIISGDDVYGGTYRYFAQVAPKIGLEVDFVDLR 131 (393)
Q Consensus 62 ~~lr~~la~~~~~~-~~i~~~~G~~al-~~~-~~--~~-~~g----d~vl~~~~~y~~~~~~~~~~~~~~g~~v~~~~~~ 131 (393)
-+++..++++.|.+ -+.-.-.|++|. .++ ++ .. +.+ ..+++..+.+..+. .......+.+++.++.+
T Consensus 109 fEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 185 (471)
T d1wyub1 109 WELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSN---PATASMAGYQVREIPSG 185 (471)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHH---HHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccce---eeeeecccceeeccccc
Confidence 56788899999998 455566777764 332 22 21 122 23455556565533 33345567777777653
Q ss_pred -----CHHHHHhhcCCCCcEEEEecCCCCcccccCHHHHHHHHHhCCCcEEEEeCccCccc--ccCCCCCcCcEEEEccc
Q psy12791 132 -----KIENLIKYIKPNTKMVWIENPTNPLMTVFDVKAISAVVKQHPDILLVLDNTFLTAY--YQKSLPWGVDIVLYSLT 204 (393)
Q Consensus 132 -----d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~livDea~~~~~--~~~~~~~~~di~~~S~s 204 (393)
+.+.+.....+++..+++++|++..+.....+++.+++++. +..+++|.+..... ...|-..+.|+++...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~-g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~ 264 (471)
T d1wyub1 186 PEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEA-GVQLYYDGANLNAIMGWARPGDMGFDVVHLNLH 264 (471)
T ss_dssp TTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHH-TCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTT
T ss_pred ccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhc-cccccccccchhhhhhccccCcccccccccccc
Confidence 68888888888899999999998866656699999999999 88888887544322 12233357788877888
Q ss_pred cccc-----CCCCceEEEEEecChHHHHHHHHH-------------------HHhcCCCCCHHH-----HHHHHhccCCH
Q psy12791 205 KYMN-----GHSDVVMGATVTNDDSLQARLKFL-------------------QNSMGVVPSPFD-----CWLVTRGLKTL 255 (393)
Q Consensus 205 K~~~-----G~~G~r~G~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-----~~~~~~~~~~~ 255 (393)
+.++ |.|| +|++.++ +++...+... +....++.+.+. .++...+-+.+
T Consensus 265 q~~G~P~~~GGP~--~G~~a~~-~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL 341 (471)
T d1wyub1 265 KTFTVPHGGGGPG--SGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGL 341 (471)
T ss_dssp TTTCCCCTTSCCC--CCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc--ccceeeh-hhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhH
Confidence 8653 3345 8999987 6665544210 000112222222 22333344555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceEeCCCCCCCcchHHHhhhcCCCcceEEEEEcC--CHH-HHHHHHHhcCcccccc
Q psy12791 256 PCRLKEHERGSIEVAKFLESHPCVKGVLHPGLPSHPNHELAKSQWSGTSGMLSFYVNG--GAE-ETRIFLESLLIFRCAE 332 (393)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~ 332 (393)
.+.-+...+++.++.+.|+. +++. +.+++ + -+ .-+-+.++. +.+ -++++++ .++
T Consensus 342 ~elA~~~~~~A~Yla~~L~~-~G~~-~~~~~----~----------ff-~EFvv~~~~~~~~~~i~k~L~~----~G~-- 398 (471)
T d1wyub1 342 KKAAALAVLNARYLKELLKE-KGYR-VPYDG----P----------SM-HEFVAQPPEGFRALDLAKGLLE----LGF-- 398 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCB-CSSCS----S----------CC-SCEEEBCSTTCCHHHHHHHHHH----TTC--
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCce-eccCc----c----------ee-eEEeecCCCCCCHHHHHHHHHH----cCC--
Confidence 55566667888888888865 4543 22221 0 00 112233321 222 2333332 221
Q ss_pred ccCCccccccCcccccCCCCChhhHhhcCCCCCeEEEEecCCChHHHHHHHHHHHHHhhc
Q psy12791 333 SLGGIESLADLPAEMTHKSIPKETRDALGITDNLVRLSVGVEGYTDLIADLDQALRKACK 392 (393)
Q Consensus 333 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~~~ 392 (393)
. ++. ...|. ..++.+-++++..++.++||.|.++|+++.+
T Consensus 399 ~-~~~---~~~p~----------------~~~~~llv~vTE~~tkedID~lv~aL~~i~~ 438 (471)
T d1wyub1 399 H-PPT---VYFPL----------------IVKEALMVEPTETEAKETLEAFAEAMGALLK 438 (471)
T ss_dssp C-CCE---ESCST----------------TSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred C-CCc---ccCcC----------------CCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 1 110 00110 1256777899999999999999999998764
|