Psyllid ID: psy12797


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60------
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
cEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccEEEcccccHHcHHHHccccc
ccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEccccHHHHHHHHHccc
mrqvfltgkqdeEEFKRQIYVLRKvsthkipkpgqrfyicSLSNRIVVYKGQFTADQLWKYFTDLN
mrqvfltgkqdeeefkRQIYVlrkvsthkipkpgqrFYICSLSNRIVVYKGQFTADQLWKYFTDLN
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
**************FKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFT***
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query66 2.2.26 [Sep-21-2011]
Q9C102 2111 Putative glutamate syntha yes N/A 0.833 0.026 0.535 7e-10
Q03460 2194 Glutamate synthase [NADH] N/A N/A 0.939 0.028 0.428 6e-08
Q9LV03 2208 Glutamate synthase 1 [NAD yes N/A 0.909 0.027 0.441 8e-08
Q0JKD0 2167 Glutamate synthase 1 [NAD yes N/A 0.939 0.028 0.428 2e-07
Q0DG35 2188 Glutamate synthase 2 [NAD no N/A 0.939 0.028 0.442 2e-07
Q12680 2145 Glutamate synthase [NADH] yes N/A 0.818 0.025 0.436 3e-07
P55037 1550 Ferredoxin-dependent glut N/A N/A 1.0 0.042 0.380 5e-07
P39812 1520 Glutamate synthase [NADPH yes N/A 0.984 0.042 0.367 5e-06
Q05755 1515 Glutamate synthase [NADPH yes N/A 0.803 0.034 0.428 2e-05
Q9ZNZ7 1648 Ferredoxin-dependent glut no N/A 0.984 0.039 0.333 0.0001
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1 Back     alignment and function desciption
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 11  DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN 66
           D + F+RQ+YVLRK S+H I K  + FYICSL    +VYKGQ    Q++ YF DLN
Sbjct: 214 DTDLFERQLYVLRKQSSHLIGKE-KWFYICSLHRETIVYKGQLAPVQVYNYFLDLN 268





Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 3
>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1 Back     alignment and function description
>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2 Back     alignment and function description
>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1 Back     alignment and function description
>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0555600 PE=2 SV=2 Back     alignment and function description
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLT1 PE=1 SV=2 Back     alignment and function description
>sp|P55037|GLTB_SYNY3 Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gltB PE=1 SV=1 Back     alignment and function description
>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) GN=gltA PE=2 SV=3 Back     alignment and function description
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1 Back     alignment and function description
>sp|Q9ZNZ7|GLTB1_ARATH Ferredoxin-dependent glutamate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query66
307210154 2138 Putative glutamate synthase [NADPH] [Har 0.984 0.030 0.723 2e-22
242015925 2068 ferredoxin-dependent glutamate synthase 1.0 0.031 0.696 4e-22
332030526 2061 Putative glutamate synthase [Acromyrmex 0.984 0.031 0.723 2e-21
307187474 1987 Glutamate synthase [NADH], amyloplastic 0.984 0.032 0.723 2e-21
322792674 2065 hypothetical protein SINV_12348 [Solenop 0.984 0.031 0.723 3e-21
345480329 2007 PREDICTED: putative glutamate synthase [ 0.984 0.032 0.707 5e-21
350405948 2065 PREDICTED: putative glutamate synthase [ 0.984 0.031 0.676 1e-20
350405946 2065 PREDICTED: putative glutamate synthase [ 0.984 0.031 0.676 1e-20
340711712 2066 PREDICTED: putative glutamate synthase [ 0.984 0.031 0.676 1e-20
383865379 2063 PREDICTED: putative glutamate synthase [ 0.984 0.031 0.676 2e-20
>gi|307210154|gb|EFN86827.1| Putative glutamate synthase [NADPH] [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 1   MRQVFLTGKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWK 60
           MRQVF+TG QD E  KRQI+VLRK S+H IP+PG R+YICSLS + +VYKGQ TADQLW 
Sbjct: 158 MRQVFVTGDQDAETLKRQIFVLRKRSSHSIPRPGLRYYICSLSLKTIVYKGQLTADQLWL 217

Query: 61  YFTDL 65
           YFTDL
Sbjct: 218 YFTDL 222




Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|242015925|ref|XP_002428593.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis] gi|212513237|gb|EEB15855.1| ferredoxin-dependent glutamate synthase 2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332030526|gb|EGI70214.1| Putative glutamate synthase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307187474|gb|EFN72550.1| Glutamate synthase [NADH], amyloplastic [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322792674|gb|EFZ16548.1| hypothetical protein SINV_12348 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|345480329|ref|XP_001605708.2| PREDICTED: putative glutamate synthase [NADPH]-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350405948|ref|XP_003487604.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350405946|ref|XP_003487603.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711712|ref|XP_003394415.1| PREDICTED: putative glutamate synthase [NADPH]-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383865379|ref|XP_003708151.1| PREDICTED: putative glutamate synthase [NADPH]-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query66
FB|FBgn0036663 2114 CG9674 [Drosophila melanogaste 0.969 0.030 0.621 2.5e-16
POMBASE|SPAPB1E7.07 2111 glt1 "glutamate synthase Glt1 0.833 0.026 0.535 1.4e-08
WB|WBGene00012326 2175 W07E11.1 [Caenorhabditis elega 0.984 0.029 0.411 2.4e-08
TIGR_CMR|CPS_0761 1535 CPS_0761 "putative glutamate s 0.984 0.042 0.422 1.2e-07
ASPGD|ASPL0000027159 2126 gltA [Emericella nidulans (tax 0.818 0.025 0.509 2.1e-07
CGD|CAL0000516 2126 GLT1 [Candida albicans (taxid: 0.787 0.024 0.433 1.2e-06
UNIPROTKB|Q0JKD0 2167 LOC_Os01g48960 "Glutamate synt 0.984 0.029 0.432 2e-06
UNIPROTKB|P55037 1550 gltB "Ferredoxin-dependent glu 0.984 0.041 0.388 2.2e-06
SGD|S000002330 2145 GLT1 "NAD(+)-dependent glutama 0.818 0.025 0.436 2.5e-06
TAIR|locus:2178461 2208 GLT1 "NADH-dependent glutamate 0.954 0.028 0.458 3.3e-06
FB|FBgn0036663 CG9674 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 219 (82.2 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 41/66 (62%), Positives = 54/66 (81%)

Query:     2 RQVFLT--GKQDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLW 59
             RQVF+      DE+ F+RQ++VLRK ++H++ KPG+RFYICSLS+R VVYKG FT+DQLW
Sbjct:   214 RQVFVRRPAGSDEKAFERQVFVLRKRASHELIKPGRRFYICSLSDRTVVYKGLFTSDQLW 273

Query:    60 KYFTDL 65
              Y+TDL
Sbjct:   274 DYYTDL 279




GO:0004355 "glutamate synthase (NADPH) activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005506 "iron ion binding" evidence=IEA
GO:0016040 "glutamate synthase (NADH) activity" evidence=IEA
GO:0010181 "FMN binding" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0006537 "glutamate biosynthetic process" evidence=IEA
GO:0051536 "iron-sulfur cluster binding" evidence=IEA
POMBASE|SPAPB1E7.07 glt1 "glutamate synthase Glt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00012326 W07E11.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0761 CPS_0761 "putative glutamate synthase, ferredoxin-dependent" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
ASPGD|ASPL0000027159 gltA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0000516 GLT1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q0JKD0 LOC_Os01g48960 "Glutamate synthase 1 [NADH], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P55037 gltB "Ferredoxin-dependent glutamate synthase 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
SGD|S000002330 GLT1 "NAD(+)-dependent glutamate synthase (GOGAT)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2178461 GLT1 "NADH-dependent glutamate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C102GLT1_SCHPO1, ., 4, ., 1, ., 1, 30.53570.83330.0260yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query66
cd00713 413 cd00713, GltS, Glutamine amidotransferases class-I 4e-24
COG0067 371 COG0067, GltB, Glutamate synthase domain 1 [Amino 7e-14
PRK11750 1485 PRK11750, gltB, glutamate synthase subunit alpha; 4e-09
>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
 Score = 92.2 bits (230), Expect = 4e-24
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 2   RQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLW 59
            QVF+      D E F+R++Y+LRK     I    + FY+CSLS+R +VYKG    +QL 
Sbjct: 129 EQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLG 188

Query: 60  KYFTDLN 66
           +++ DL 
Sbjct: 189 QFYPDLQ 195


GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. Length = 413

>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 66
cd00713 413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.88
PF00310 361 GATase_2: Glutamine amidotransferases class-II; In 99.85
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.84
COG0067 371 GltB Glutamate synthase domain 1 [Amino acid trans 99.82
KOG0399|consensus 2142 99.79
cd01907 249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 91.94
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
Probab=99.88  E-value=2.1e-23  Score=153.78  Aligned_cols=66  Identities=41%  Similarity=0.798  Sum_probs=56.9

Q ss_pred             CEEEEEcCC--CChHHHHHHHHHHHHHHhhhCCCCCCceEEeccCcchhhhhcccChhchhhhccCCC
Q psy12797          1 MRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN   66 (66)
Q Consensus         1 i~Qvfv~~~--~~~~~fer~Ly~~Rk~~e~~~~~~~~~fYi~SLSs~tivYKGml~~~qL~~fy~DL~   66 (66)
                      |+|+||.++  .+..+|||+||++||++|+.+.....+|||||||++|||||||++|+||..||+||+
T Consensus       128 i~Q~fv~~~~~~~~~~~er~l~~~r~~~e~~~~~~~~~~yv~Sls~~~iVyKGm~~~~~v~~~Y~DL~  195 (413)
T cd00713         128 IEQVFVGAPSGDDGEAFERKLYLLRKRIEKAIRAADEDFYVCSLSSRTIVYKGMLLPEQLGQFYPDLQ  195 (413)
T ss_pred             EEEEEEecCCccCcchHHHHHHHHHHHHHHHHHhcCCCEEEEecccceEEEeccccHHHHHHhccccC
Confidence            799999754  234679999999999999976432246999999999999999999999999999985



GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0399|consensus Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query66
2vdc_A 1472 The 9.5 A Resolution Structure Of Glutamate Synthas 1e-06
1ea0_A 1479 Alpha Subunit Of A. Brasilense Glutamate Synthase L 1e-06
1llw_A 1520 Structural Studies On The Synchronization Of Cataly 3e-04
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 1472 Back     alignment and structure

Iteration: 1

Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 12 EEEFKRQIYVLRKVSTHKIPKPGQ--RFYICSLSNRIVVYKGQFTADQLWKYFTDL 65 +E+F+ +Y++R+ K K Q FYICSLS R ++YKG F A+QL ++ DL Sbjct: 141 DEQFELDLYIIRR-RIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDL 195
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase Length = 1479 Back     alignment and structure
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic Centers In Glutamate Synthase: Complex With 2-Oxoglutarate Length = 1520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query66
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 2e-25
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 4e-25
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479 Back     alignment and structure
 Score = 96.1 bits (240), Expect = 2e-25
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 1   MRQVFLTGKQ--DEEEFKRQIYVLRKVSTHKIPKPGQR-FYICSLSNRIVVYKGQFTADQ 57
           + Q+ +   +   +E+F+  +Y++R+     +       FYICSLS R ++YKG F A+Q
Sbjct: 128 IEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQ 187

Query: 58  LWKYFTDLN 66
           L  ++ DL 
Sbjct: 188 LTTFYPDLL 196


>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query66
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.6
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.6
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure
Probab=99.60  E-value=2.5e-16  Score=128.02  Aligned_cols=62  Identities=32%  Similarity=0.672  Sum_probs=54.9

Q ss_pred             CEEEEEcCC--CChHHHHHHHHHHHHHHhhhCCCCCCceEEeccCcchhhhhcccChhchhhhccCC
Q psy12797          1 MRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKPGQRFYICSLSNRIVVYKGQFTADQLWKYFTDL   65 (66)
Q Consensus         1 i~Qvfv~~~--~~~~~fer~Ly~~Rk~~e~~~~~~~~~fYi~SLSs~tivYKGml~~~qL~~fy~DL   65 (66)
                      |+|+||..+  .+..+|||+||.+|+++|+...   .+|||||+|++|+|||||++++||..||+||
T Consensus       128 i~Q~fv~~~~~~~~~~~~r~ly~~r~~le~~~~---~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL  191 (1520)
T 1ofd_A          128 IEQILVTCPEGCAGDELDRRLYIARSIIGKKLA---EDFYVCSFSCRTIVYKGMVRSIILGEFYLDL  191 (1520)
T ss_dssp             EEEEEEECTTCCCHHHHHHHHHHHHHHHGGGCB---TTBEEEEEESSEEEEEESSCHHHHHHHBHHH
T ss_pred             eEEEEEECCCCcchhhHHHHHHHHHHHHHhhcc---CCEEEEEecCcEEEEeCCccHHHHhhhhhhc
Confidence            799999543  3456899999999999999863   3599999999999999999999999999987



>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 66
d1ea0a3 422 d.153.1.1 (A:1-422) Alpha subunit of glutamate syn 8e-11
d1ofda3 430 d.153.1.1 (A:1-430) Alpha subunit of glutamate syn 1e-10
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Length = 422 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]
 Score = 53.1 bits (127), Expect = 8e-11
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 9   KQDEEEFKRQIYVLRKVSTHKIPKPG-QRFYICSLSNRIVVYKGQFTADQLWKYFTDL 65
              +E+F+  +Y++R+     +       FYICSLS R ++YKG F A+QL  ++ DL
Sbjct: 138 GVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDL 195


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Length = 430 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query66
d1ea0a3 422 Alpha subunit of glutamate synthase, N-terminal do 99.92
d1ofda3 430 Alpha subunit of glutamate synthase, N-terminal do 99.91
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]
Probab=99.92  E-value=5.1e-27  Score=170.24  Aligned_cols=66  Identities=33%  Similarity=0.691  Sum_probs=57.2

Q ss_pred             CEEEEEcCC--CChHHHHHHHHHHHHHHhhhCCCC-CCceEEeccCcchhhhhcccChhchhhhccCCC
Q psy12797          1 MRQVFLTGK--QDEEEFKRQIYVLRKVSTHKIPKP-GQRFYICSLSNRIVVYKGQFTADQLWKYFTDLN   66 (66)
Q Consensus         1 i~Qvfv~~~--~~~~~fer~Ly~~Rk~~e~~~~~~-~~~fYi~SLSs~tivYKGml~~~qL~~fy~DL~   66 (66)
                      |+|+||.++  .++++|||+||++||++|+.+... ..+|||||||+||||||||++|+||++||+||+
T Consensus       128 i~Q~fv~~~~~~~~~~fEr~Ly~~Rk~~e~~~~~~~~~~fYi~SlSsrTIVYKGml~~~ql~~fy~DL~  196 (422)
T d1ea0a3         128 IEQIIVGNNKGVSDEQFELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLL  196 (422)
T ss_dssp             EEEEEEECTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGG
T ss_pred             heeeeeecCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCceecccccceeeeeccccHHHHHhhhhccc
Confidence            689999744  467889999999999999876422 136999999999999999999999999999985



>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure