Psyllid ID: psy12800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
IGRESNESLESSGKKSRRPSFISGRSFASASRILNQHFPNLQLTKSKSGDTSKHTLSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEcccccHHHHcccccccccccccEEEEEEccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEcccccccccccccccccccccccccccEEEEEEEccccccEEEEcccccccEEEccccccccccccccEEEEEccHEEEEEEcccEEcc
Coil and Loop (DISEMBL)
igresneslessgkksrrpsfisgrSFASASRILnqhfpnlqltksksgdtskhtlsadsldskgqspemhrrsfvgfnagngtrsyeyypysqrstIRDLVgrgwangfpgrhifridENIMLELTLGEIQLD
Flexible Loop (DISEMBL)
igresneslessgkksrrpsfiSGRSFASASRILNQHFPnlqltksksgdtskHTLSadsldskgqspemhrrsfvgfnagngtrsyeyypYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Low Complexity Region (SEG)
IGRESNESLESSGKKSRRPSFISGRSFASASRILNQHFPNLQLTKSKSGDTSKHTLSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Disordered region (IsUnstruct)
**************************************************************************FVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGE****
Disordered Region (DISOPRED)
*************************SFASASRILNQHFPNL*********************************FVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQL*
Disordered Region (DISEMBL)
*********************ISGRSFASASRILNQHFPNLQLTK************************MHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Disordered Region (DISPRO)
**********************SGRSFASASRILNQHFPNLQLTK*********************SPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IGRESNESLESSGKKSRRPSFISGRSFASASRILNQHFPNLQLTKSKSGDTSKHTLSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q0KHY3	1431	Extracellular domains-con	no	N/A	0.462	0.043	0.597	9e-19

>sp|Q0KHY3|Y1004_DROME Extracellular domains-containing protein CG31004 OS=Drosophila melanogaster GN=CG31004 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 58  ADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFR 117
            D+   +G  P     ++VGFNAGNGT++YEY PYSQ   IRDL  RGWANGFPGRHIFR
Sbjct: 367 GDTTKGEGGVP-----AYVGFNAGNGTQAYEYNPYSQNMVIRDLANRGWANGFPGRHIFR 421

Query: 118 IDENIML 124
           +DE I++
Sbjct: 422 VDEQILI 428

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
350417175	1267	PREDICTED: extracellular domains-contain	0.559	0.059	0.629	7e-20
340715043	1267	PREDICTED: extracellular domains-contain	0.559	0.059	0.629	7e-20
383855804	1397	PREDICTED: extracellular domains-contain	0.373	0.035	0.86	4e-19
332019409	1406	Extracellular domains-containing protein	0.380	0.036	0.843	4e-19
345482776	1358	PREDICTED: extracellular domains-contain	0.380	0.037	0.823	5e-19
357623997	1477	hypothetical protein KGM_05469 [Danaus p	0.380	0.034	0.803	6e-19
380020283	1377	PREDICTED: extracellular domains-contain	0.507	0.049	0.630	2e-18
307174209	1395	Uncharacterized protein K03H1.5 [Campono	0.380	0.036	0.823	2e-18
328788914	1265	PREDICTED: extracellular domains-contain	0.507	0.053	0.616	3e-18
157109935	1427	hypothetical protein AaeL_AAEL005432 [Ae	0.380	0.035	0.784	6e-18

>gi|350417175|ref|XP_003491293.1| PREDICTED: extracellular domains-containing protein CG31004-like [Bombus impatiens]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 6/81 (7%)

Query: 52  SKHTLSA-DSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 110
           S HT +  D++  +G  P     +FVGFNAGNGTRSYEY P+SQ STIRDL GRGWANGF
Sbjct: 366 SSHTEAGGDTMYGEGGVP-----AFVGFNAGNGTRSYEYKPFSQMSTIRDLTGRGWANGF 420

Query: 111 PGRHIFRIDENIMLELTLGEI 131
           PGRH+FRIDENIM  +   +I
Sbjct: 421 PGRHMFRIDENIMPAVCNKDI 441

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715043|ref|XP_003396030.1| PREDICTED: extracellular domains-containing protein CG31004-like [Bombus terrestris]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 6/81 (7%)

Query: 52  SKHTLSA-DSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 110
           S HT +  D++  +G  P     +FVGFNAGNGTRSYEY P+SQ STIRDL GRGWANGF
Sbjct: 366 SSHTEAGGDTMYGEGGVP-----AFVGFNAGNGTRSYEYKPFSQMSTIRDLTGRGWANGF 420

Query: 111 PGRHIFRIDENIMLELTLGEI 131
           PGRH+FRIDENIM  +   +I
Sbjct: 421 PGRHMFRIDENIMPAVCNKDI 441

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855804|ref|XP_003703400.1| PREDICTED: extracellular domains-containing protein CG31004-like [Megachile rotundata]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 46/50 (92%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIM 123
           +FVGFNAGNGT+ YEY PYSQRSTIRDL GRGWANGFPGRHIFRIDE I+
Sbjct: 383 AFVGFNAGNGTQVYEYKPYSQRSTIRDLTGRGWANGFPGRHIFRIDEKII 432

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019409|gb|EGI59893.1| Extracellular domains-containing protein [Acromyrmex echinatior]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIML 124
           +FVGFNAGNGT+SYEY PYSQ +TIRDL  RGWANGFPGRHIFRIDE IML
Sbjct: 388 AFVGFNAGNGTQSYEYKPYSQATTIRDLTSRGWANGFPGRHIFRIDEKIML 438

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482776|ref|XP_001600000.2| PREDICTED: extracellular domains-containing protein CG31004-like [Nasonia vitripennis]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 47/51 (92%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIML 124
           +++GFNAGNGT+SYEY PYSQ ST+RDL GRGWANGFPGRHIFRIDE IML
Sbjct: 386 AYIGFNAGNGTQSYEYMPYSQASTVRDLSGRGWANGFPGRHIFRIDEKIML 436

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623997|gb|EHJ74925.1| hypothetical protein KGM_05469 [Danaus plexippus]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 47/51 (92%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIML 124
           +++GFNAGNGTRSYEY PYSQ S +RDL GRGWANGFPGRHIFRIDENI++
Sbjct: 361 AYIGFNAGNGTRSYEYKPYSQASVLRDLTGRGWANGFPGRHIFRIDENILM 411

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020283|ref|XP_003694019.1| PREDICTED: extracellular domains-containing protein CG31004-like [Apis florea]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/73 (63%), Positives = 52/73 (71%), Gaps = 5/73 (6%)

Query: 51  TSKHTLSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 110
           TS      D+   +G  P     +FVGFNAGNGTRSYEY PYSQ S+IRDL GRGWAN F
Sbjct: 342 TSHTEAGGDTTRGEGGVP-----AFVGFNAGNGTRSYEYKPYSQMSSIRDLTGRGWANKF 396

Query: 111 PGRHIFRIDENIM 123
           PGRH+FRIDE I+
Sbjct: 397 PGRHMFRIDERIL 409

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174209|gb|EFN64854.1| Uncharacterized protein K03H1.5 [Camponotus floridanus]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIML 124
           ++VGFNAGNGT+SYEY PYSQ +TIRDL  RGWANGFPGRHIFRIDE IML
Sbjct: 362 AYVGFNAGNGTQSYEYKPYSQATTIRDLTSRGWANGFPGRHIFRIDEKIML 412

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788914|ref|XP_392408.3| PREDICTED: extracellular domains-containing protein CG31004-like isoform 1 [Apis mellifera]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 53/73 (72%), Gaps = 5/73 (6%)

Query: 51  TSKHTLSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGF 110
           TS      D+   +G  P     +FVGFNAGNGT+SYEY P+SQRS+IRDL GRGWAN F
Sbjct: 363 TSHTEAGGDTTRGEGGVP-----AFVGFNAGNGTQSYEYKPFSQRSSIRDLTGRGWANNF 417

Query: 111 PGRHIFRIDENIM 123
           PGRH+FRIDE I+
Sbjct: 418 PGRHMFRIDEIIL 430

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109935|ref|XP_001650886.1| hypothetical protein AaeL_AAEL005432 [Aedes aegypti] gi|108878861|gb|EAT43086.1| AAEL005432-PB [Aedes aegypti]

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query: 74  SFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIML 124
           +++GFNAGNGT++YEY PYSQ S +RDL GRGWANGFPGRHIFRIDE IML
Sbjct: 369 AYIGFNAGNGTQAYEYKPYSQASVLRDLTGRGWANGFPGRHIFRIDERIML 419

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
FB|FBgn0051004	1431	mesh "mesh" [Drosophila melano	0.492	0.046	0.583	9.5e-17

FB|FBgn0051004 mesh "mesh" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 9.5e-17, P = 9.5e-17
 Identities = 42/72 (58%), Positives = 51/72 (70%)

Query:    54 HT-LSADSLDSKGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPG 112
             HT    D+   +G  P     ++VGFNAGNGT++YEY PYSQ   IRDL  RGWANGFPG
Sbjct:   362 HTEAGGDTTKGEGGVP-----AYVGFNAGNGTQAYEYNPYSQNMVIRDLANRGWANGFPG 416

Query:   113 RHIFRIDENIML 124
             RHIFR+DE I++
Sbjct:   417 RHIFRVDEQILI 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      134       134   0.00091  102 3  11 23  0.46    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.00u 0.09s 15.09t   Elapsed:  00:00:06
  Total cpu time:  15.00u 0.09s 15.09t   Elapsed:  00:00:07
  Start:  Thu Aug 15 11:13:53 2013   End:  Thu Aug 15 11:14:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0005920 "smooth septate junction" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IMP

GO:0061028 "establishment of endothelial barrier" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam06119	90	pfam06119, NIDO, Nidogen-like	1e-07
smart00539	152	smart00539, NIDO, Extracellular domain of unknown	0.004

>gnl|CDD|147987 pfam06119, NIDO, Nidogen-like

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 76  VGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDE 120
            GF+AG+G R +   P S+  ++R+L       G PGR IFR+  
Sbjct: 47  AGFSAGDGNRFFTL-PGSRTESVRNLAQS-SNVGVPGRWIFRVGG 89

This is a nidogen-like domain (NIDO) domain and is an extracellular domain found in nidogen and hypothetical proteins of unknown function. Length = 90

>gnl|CDD|214712 smart00539, NIDO, Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 76  VGFNAGNGT------RSYEYYPYSQRSTIRDLVGRGWANGFPGRHI 115
            GFN G+GT       S E    +        +   W     G  I
Sbjct: 107 AGFNGGDGTFSYTLPASGEENIKNLAEGSNVGIPGRWMFRVDGAEI 152

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PF06119	90	NIDO: Nidogen-like; InterPro: IPR003886 The ~180-r	99.71
smart00539	152	NIDO Extracellular domain of unknown function in n	99.62
KOG4291|consensus	1043		99.52

>PF06119 NIDO: Nidogen-like; InterPro: IPR003886 The ~180-residue NIDO domain is an extracellular domain of unknown function, found in nidogen (entactin) and hypothetical proteins

Probab=99.71  E-value=6e-18  Score=118.12  Aligned_cols=56  Identities=39%  Similarity=0.599  Sum_probs=51.7

Q ss_pred             CCCCCCCCccceeeeeccCceeeEEeecCCCcccccccccccccCCCCcceEEeechh
Q psy12800         64 KGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDEN  121 (134)
Q Consensus        64 ~g~~G~GGipAqvGFNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~PGRwvFRIDe~  121 (134)
                      .+.+|++++||+||||+||+++||+ +|+|++..|++|...+|+ |+||||+||||++
T Consensus        35 ~~~~~~~~~~a~aGf~~gd~~~~~~-lp~s~t~~i~~l~~~sN~-g~~G~wifrid~~   90 (90)
T PF06119_consen   35 GGYNGLGGVPAQAGFNSGDGTNYYN-LPGSGTDSIRNLDNSSNV-GVPGRWIFRIDSE   90 (90)
T ss_pred             cccccceeeeeEEEEecCCCcceEE-ecCCCccceeehhhcCCC-CCCEEEEEEeCCC
Confidence            4568999999999999999999999 899999999999999855 6999999999975

The NIDO domain is found in association with other domains, such as nidogen G2 beta-barrel (IPR006605 from INTERPRO), thyroglobulin type-1 (IPR000716 from INTERPRO), LDLRB (IPR000033 from INTERPRO), AMOP (IPR005533 from INTERPRO), EGF-like (IPR000742 from INTERPRO), VWFD, IPT/TIG, or sushi/CCP/SCR (IPR000436 from INTERPRO) [, , , ]. Some proteins known to contain a NIDO domain are listed below: Vertebrate nidogen-1 (NID-1) or entactin, a sulphated glycoprotein widely distributed in basement membranes. Vertebrate nidogen-2 (NID-2) or osteonidogen, a cell adhesion glycoprotein which is widely distributed in basement membranes. Vertebrate alpha-tectorin. Mammalian mucin-4 (MUC4), a highly glycosylated membrane-bound protein. Xenopus ID14, a putative matrix protein. ; GO: 0007160 cell-matrix adhesion

>smart00539 NIDO Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins

Probab=99.62  E-value=3e-16  Score=119.15  Aligned_cols=53  Identities=38%  Similarity=0.627  Sum_probs=47.8

Q ss_pred             CCCCccceeeeeccCceeeEEeecCCCcccccccccccccCCCCcceEEeechhh
Q psy12800         68 PEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENI  122 (134)
Q Consensus        68 G~GGipAqvGFNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~PGRwvFRIDe~I  122 (134)
                      |..|++||||||+|||+.+|+ +|+|++..|++|...+|+ |+||||+||||+..
T Consensus        99 ~~~~~~a~aGF~~Gdg~~~~~-lp~S~~~~~~~L~~~sN~-g~~G~w~frid~~~  151 (152)
T smart00539       99 GDDGVRARAGFNGGDGTFSYT-LPASGEENIKNLAEGSNV-GIPGRWMFRVDGAE  151 (152)
T ss_pred             CCCCcceeEEEeccCCceeEE-CCCCCCcchhhhhhcCCC-CCceEEEEEeCCcc
Confidence            344899999999999999998 999999999999999954 79999999999853

>KOG4291|consensus

Probab=99.52  E-value=3.6e-15  Score=140.87  Aligned_cols=68  Identities=37%  Similarity=0.535  Sum_probs=62.3

Q ss_pred             CCCCCCCCccceeeeeccCceeeEEeecCCCcccccccccccccCCCCcceEEeechhhhhccccccccC
Q psy12800         64 KGQSPEMHRRSFVGFNAGNGTRSYEYYPYSQRSTIRDLVGRGWANGFPGRHIFRIDENIMLELTLGEIQL  133 (134)
Q Consensus        64 ~g~~G~GGipAqvGFNaGnGt~~y~y~P~Sqt~~I~dL~~ts~~ng~PGRwvFRIDe~I~~g~C~~d~~~  133 (134)
                      .++.|+|+.+||||||+||+|+.|. +||||++.|.+|. +++++++||||+||+||.++..+|.+++..
T Consensus       308 ~~~~g~~~~~~qagfn~G~~t~~~~-~P~s~t~~i~~~~-sg~~v~~PGr~~frvd~~~~~~~c~~~~g~  375 (1043)
T KOG4291|consen  308 DGRAGRCGVSAQAGFNAGNGTVDFS-LPYSQTPNILALR-SGTNVGDPGRWMFRVDEVVRSAGCTNDIGG  375 (1043)
T ss_pred             CCcccceeeEEeeeecCCCcccccc-ccCCCCceeEecc-ccccccCCcccceecCCeecccccccCcCC
Confidence            3457999999999999999999999 6999999999999 777889999999999999887669999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00